Query 002963
Match_columns 862
No_of_seqs 285 out of 672
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 08:13:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002963.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002963hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogz_A UDP-sugar pyrophosphory 100.0 2E-109 5E-114 955.1 40.0 556 134-800 7-619 (630)
2 2yqc_A UDP-N-acetylglucosamine 100.0 2.4E-85 8.3E-90 746.0 32.5 444 135-686 5-470 (486)
3 3r3i_A UTP--glucose-1-phosphat 100.0 1.5E-81 5.3E-86 713.1 27.0 422 195-731 63-502 (528)
4 1jv1_A Glcnac1P uridyltransfer 100.0 3.7E-80 1.2E-84 706.1 36.4 430 134-663 1-440 (505)
5 3gue_A UTP-glucose-1-phosphate 100.0 3E-80 1E-84 698.1 28.2 378 281-731 69-464 (484)
6 3oc9_A UDP-N-acetylglucosamine 100.0 1E-77 3.5E-82 667.3 32.4 353 277-678 22-382 (405)
7 2oeg_A UTP-glucose-1-phosphate 100.0 2.6E-77 8.8E-82 680.9 16.8 404 281-771 68-490 (505)
8 2i5k_A UTP--glucose-1-phosphat 100.0 3.6E-70 1.2E-74 621.5 24.5 461 161-768 10-480 (488)
9 2icy_A Probable UTP-glucose-1- 100.0 3.4E-67 1.2E-71 594.4 23.0 391 256-731 45-446 (469)
10 3st8_A Bifunctional protein GL 98.2 6.5E-06 2.2E-10 93.5 14.0 192 287-549 11-204 (501)
11 3oam_A 3-deoxy-manno-octuloson 97.8 0.00017 5.8E-09 74.7 12.5 189 288-548 2-197 (252)
12 3brk_X Glucose-1-phosphate ade 97.5 0.003 1E-07 69.8 18.4 203 287-548 11-221 (420)
13 4ecm_A Glucose-1-phosphate thy 97.5 0.0013 4.4E-08 68.5 14.6 178 288-544 24-204 (269)
14 3tqd_A 3-deoxy-manno-octuloson 97.5 0.0033 1.1E-07 65.9 17.7 190 288-548 9-206 (256)
15 3k8d_A 3-deoxy-manno-octuloson 97.4 0.0017 5.9E-08 68.4 15.0 190 288-548 18-213 (264)
16 1yp2_A Glucose-1-phosphate ade 97.2 0.0053 1.8E-07 68.3 16.6 210 288-549 20-246 (451)
17 2qh5_A PMI, ALGA, mannose-6-ph 97.2 0.0029 1E-07 67.4 13.9 192 288-548 4-203 (308)
18 1fxo_A Glucose-1-phosphate thy 97.2 0.0061 2.1E-07 64.8 15.9 181 289-546 3-186 (293)
19 4fce_A Bifunctional protein GL 97.2 0.004 1.4E-07 68.9 14.8 181 288-549 8-189 (459)
20 3juk_A UDP-glucose pyrophospho 97.2 0.0036 1.2E-07 65.2 13.3 64 289-373 3-69 (281)
21 3pnn_A Conserved domain protei 97.1 0.016 5.6E-07 61.6 18.3 212 288-546 5-228 (303)
22 1lvw_A Glucose-1-phosphate thy 97.1 0.014 4.7E-07 62.2 17.2 180 289-546 4-187 (295)
23 1ezi_A CMP-N-acetylneuraminic 97.0 0.0021 7.3E-08 64.6 10.1 127 288-474 4-133 (228)
24 4fcu_A 3-deoxy-manno-octuloson 97.0 0.01 3.4E-07 62.1 15.0 187 289-548 2-198 (253)
25 3f1c_A Putative 2-C-methyl-D-e 96.9 0.0033 1.1E-07 64.6 10.5 124 288-467 3-134 (246)
26 1qwj_A Cytidine monophospho-N- 96.8 0.0073 2.5E-07 61.2 11.9 129 288-474 3-131 (229)
27 1h7e_A 3-deoxy-manno-octuloson 96.8 0.0043 1.5E-07 62.8 9.9 181 288-547 2-187 (245)
28 1mc3_A Glucose-1-phosphate thy 96.7 0.0071 2.4E-07 64.5 11.6 180 289-546 4-187 (296)
29 1vic_A 3-deoxy-manno-octuloson 96.7 0.018 6.3E-07 59.3 13.9 126 288-474 2-127 (262)
30 2v0h_A Bifunctional protein GL 96.7 0.0093 3.2E-07 65.9 12.2 180 288-548 5-185 (456)
31 1hm9_A GLMU, UDP-N-acetylgluco 96.6 0.021 7.1E-07 63.5 14.3 181 290-548 13-194 (468)
32 2xwl_A 2-C-methyl-D-erythritol 96.4 0.0027 9.2E-08 63.2 5.0 54 288-358 2-55 (223)
33 2waw_A MOBA relate protein; un 96.3 0.0019 6.5E-08 62.9 3.1 106 288-452 5-111 (199)
34 3q80_A 2-C-methyl-D-erythritol 96.2 0.0037 1.3E-07 64.5 5.3 64 288-370 7-70 (231)
35 2wee_A MOBA-related protein; u 96.2 0.0032 1.1E-07 61.3 4.6 106 288-452 5-111 (197)
36 1tzf_A Glucose-1-phosphate cyt 96.2 0.0035 1.2E-07 64.0 4.8 190 289-543 3-199 (259)
37 2yc3_A 2-C-methyl-D-erythritol 96.0 0.003 1E-07 63.3 3.0 54 288-358 4-57 (228)
38 1i52_A 4-diphosphocytidyl-2-C- 95.9 0.0035 1.2E-07 63.4 3.2 54 288-358 7-60 (236)
39 1vgw_A 4-diphosphocytidyl-2C-m 95.9 0.0039 1.3E-07 62.5 3.2 64 288-372 6-69 (231)
40 1vpa_A 2-C-methyl-D-erythritol 95.9 0.0043 1.5E-07 62.5 3.5 54 288-358 13-66 (234)
41 2vsh_A TARI, 2-C-methyl-D-eryt 95.7 0.0056 1.9E-07 61.3 3.7 65 289-372 3-68 (236)
42 3rsb_A Adenosylcobinamide-phos 95.7 0.0047 1.6E-07 60.6 3.0 62 290-373 2-63 (196)
43 3d5n_A Q97W15_sulso; NESG, SSR 95.7 0.0055 1.9E-07 60.8 3.4 48 288-358 2-49 (197)
44 1e5k_A Molybdopterin-guanine d 95.6 0.0063 2.2E-07 60.8 3.7 39 288-334 6-44 (201)
45 2px7_A 2-C-methyl-D-erythritol 95.3 0.0072 2.5E-07 61.7 2.8 37 288-332 25-61 (236)
46 2y6p_A 3-deoxy-manno-octuloson 95.1 0.0091 3.1E-07 59.9 2.9 178 288-548 2-182 (234)
47 3ngw_A Molybdopterin-guanine d 95.0 0.0093 3.2E-07 60.4 2.8 36 290-334 2-37 (208)
48 1jyk_A LICC protein, CTP:phosp 94.8 0.012 4.2E-07 60.8 2.9 63 288-371 25-90 (254)
49 4evw_A Nucleoside-diphosphate- 94.5 0.0083 2.8E-07 62.4 0.8 38 291-335 2-42 (255)
50 2e8b_A Probable molybdopterin- 94.3 0.0051 1.7E-07 61.3 -1.4 50 288-358 14-63 (201)
51 2e3d_A UTP--glucose-1-phosphat 94.2 0.034 1.2E-06 58.5 4.7 64 288-372 8-74 (302)
52 2xme_A CTP-inositol-1-phosphat 94.1 0.017 5.9E-07 58.2 2.2 42 286-335 16-57 (232)
53 2ux8_A Glucose-1-phosphate uri 93.9 0.035 1.2E-06 58.3 4.1 64 288-372 14-80 (297)
54 2x65_A Mannose-1-phosphate gua 93.6 0.034 1.1E-06 60.4 3.3 40 290-335 3-46 (336)
55 2pa4_A UTP-glucose-1-phosphate 93.5 0.041 1.4E-06 58.9 3.8 62 289-371 13-77 (323)
56 1w55_A ISPD/ISPF bifunctional 93.2 0.039 1.3E-06 61.0 3.2 41 288-335 3-43 (371)
57 2cu2_A Putative mannose-1-phos 92.1 0.071 2.4E-06 57.8 3.3 41 289-335 3-47 (337)
58 2dpw_A Hypothetical protein TT 90.9 0.11 3.8E-06 52.6 3.1 40 288-335 2-44 (232)
59 2ggo_A 401AA long hypothetical 90.6 0.11 3.6E-06 56.6 2.8 60 290-373 2-64 (401)
60 3d0j_A Uncharacterized protein 51.2 47 0.0016 32.2 8.1 60 761-823 19-99 (140)
61 2qjv_A Uncharacterized IOLB-li 35.7 64 0.0022 34.3 7.0 59 775-833 40-111 (270)
62 3jtz_A Integrase; four strande 22.2 76 0.0026 27.9 4.0 32 823-859 22-53 (88)
No 1
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*
Probab=100.00 E-value=1.6e-109 Score=955.08 Aligned_cols=556 Identities=20% Similarity=0.170 Sum_probs=469.6
Q ss_pred ccHHHHHHHHHH--cCCccccccCCccchhhhhhhhHHHHHHHHHhhhhccccCCCcccchhhcchhhHHHHHHHHHHHH
Q 002963 134 LDQLFLIKCVIA--AGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLA 211 (862)
Q Consensus 134 ~~~~~L~~~L~~--~gQeHll~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~Ll~qL~ 211 (862)
++...|+++|.+ +||+|||++|++ . |+| ++++|++|++||.
T Consensus 7 ~~~~~L~~~l~~~~~gQ~HLf~~w~~---~---------------------------------l~~-~~~e~~~L~~qL~ 49 (630)
T 3ogz_A 7 SNLQALREELCTPGLDQGHLFEGWPE---T---------------------------------VDE-CNERQIALLTDLY 49 (630)
T ss_dssp HHHHHHHHHHTSTTTCCGGGGTTCCS---S---------------------------------GGG-CCHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhccCCchhhhhhccc---c---------------------------------cCC-CHHHHHHHHHHHH
Confidence 467889999997 999999999655 0 341 2358999999999
Q ss_pred HHhccccCcChHHHHHHHHHHHHhccccccccccccccccccccccccc-cC---CCCcccCCChHHHHHHHHHhhhccC
Q 002963 212 EIEQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEI-HV---PSGLDLSQNTEYAAQAALWGIEGLP 287 (862)
Q Consensus 212 ~ld~~y~~~ggl~~Y~~~a~~ll~~s~~~~~~~~~~~~~~~~~~~~d~~-~v---P~g~~l~~~~~~~~~~e~~G~e~L~ 287 (862)
.+|..| +|||.+|+++|++++. +. .+. ++++.+ ++ |.+..++.+++...+++++|+++|+
T Consensus 50 ~~d~~~--~~gl~~~~~~a~~~l~-~~--~~~-----------~~~~~~~p~P~~~~~~~l~~~~~~~~~~~~~Gl~~i~ 113 (630)
T 3ogz_A 50 MFSNMY--PGGVAQYIRNGHELLA-RE--SEE-----------VDFAALEMPPLIFEAPSLHRRTAERTALENAGTAMLC 113 (630)
T ss_dssp HGGGTS--TTHHHHHHHHHHHHHH-HH--TSC-----------CCCSEEECCSCEEECCCTTCCCHHHHHHHHHHHHHGG
T ss_pred hhChhh--hhhHHHHHHHHHHHhh-cc--ccC-----------CcccccccCCCCCccccccCCHHHHHHHHHHhHHHHh
Confidence 999988 6999999999999993 32 111 345555 23 3466677677788899999999999
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
|+|||+||||||||||+++||+ +|||+++ +|+||||++++||++ ++| +.||||||||+ +||++|+
T Consensus 114 kvavvllaGGlGTRLG~~~pK~--~lpv~~~--s~ks~lql~~e~i~~-------~~g--~~iPl~IMTS~--~T~~~T~ 178 (630)
T 3ogz_A 114 KTVFVLVAGGLGERLGYSSIKV--SLPVETA--TNTTYLAYYLRWAQR-------VGG--KEVPFVIMTSD--DTHDRTL 178 (630)
T ss_dssp GEEEEEECCCEEGGGTEEEEGG--GSBSCTT--TCCBHHHHHHHHHHH-------HHC--TTCCEEEEECT--TTHHHHH
T ss_pred hceEEEecCCcccccCCCCCcc--cceecCC--CCCcHHHHHHHHHHH-------HhC--CCCcEEEEecc--cchHHHH
Confidence 9999999999999999999999 9999987 999999999999993 357 89999999999 8999999
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcC------------------ch
Q 002963 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKG------------------IF 429 (862)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sG------------------lL 429 (862)
+||++ ||++++||+||+|+++||+++++|+++++++++++|+|+||||||.+|+++| +|
T Consensus 179 ~~~~~---fgl~~~~V~~F~Q~~~P~i~~~~g~l~l~~~~~i~~~P~GhGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lL 255 (630)
T 3ogz_A 179 QLLRE---LQLEVPNLHVLKQGQVFCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLV 255 (630)
T ss_dssp HHHHH---TTCCCTTEEEEECCCEECBSSTTCCBCBCTTSSBCEECCCTTHHHHHHHHCBC--------------CCBHH
T ss_pred HHHHH---hCCCcccEEEEEcCCEEEEecCCCceeecCCCcccCCCCCCHHHHHHHHHcCCCcccccccccccccHHHHH
Confidence 99999 9999999999999999999878999999999999999999999999999999 99
Q ss_pred HHHHHcCceEEEEEeCCCccccc-cHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEec
Q 002963 430 KWFHDNGRKGATVRQVSNVVAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYT 508 (862)
Q Consensus 430 d~l~~~Gikyi~V~qvDN~La~v-DP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYs 508 (862)
++|+++|++|+||+||||+|+++ ||.| +|||+.++++|+++||.| .++|++|++|+.++.||++ ++++||||+
T Consensus 256 d~l~~~Gieyi~v~~vDN~L~~~~DP~~---lG~~~~~~~d~~~kvv~r--~p~E~vG~l~~~~~~dGk~-~~v~vVEYs 329 (630)
T 3ogz_A 256 NDWLAAGYESIVFIQDTNAGATITIPIS---LALSAEHSLDMNFTCIPR--VPKEPIGLLCRTKKNSGDP-WLVANVEYN 329 (630)
T ss_dssp HHHHHTTCCEEEEECTTBTTHHHHHHHH---HHHHHHTTCSEEEEEECC--CSSCSSCEEEEEESSTTSC-CEEEEECHH
T ss_pred HHHHHcCCEEEEEEccCCccccccCHHH---hHHHHhcCCCEEEEEEEC--CCCcceeeEEEEecCCCce-eeeeEEEec
Confidence 99999999999999999999987 9955 899999999999998665 3689999999866679981 134789999
Q ss_pred ccCccCC----CCCC-CCCCCccccCccceeeeEEeHHHHHhhhcccccCCccccccccCCCceeecCCCCccccCccee
Q 002963 509 EFDKFGI----TRGP-FSSNGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRL 583 (862)
Q Consensus 509 El~~~~~----~~~~-~~dg~l~S~F~~Ninn~~fsL~~l~~vl~~~~~~~Lp~hIanpKKkIpy~D~~g~~~~~~~~rL 583 (862)
|++++.. ++++ +.+.+.++.||||||||||+|++|.+.+.. ..+.+|.+| ||| |+|..+ +.+++++||
T Consensus 330 ei~~~~~~~~~~~g~~~~~~~~~~~f~GNtNnl~~~L~a~~~~l~~-~~~~ip~~v-NpK----~~d~~~-~~~~~~~qL 402 (630)
T 3ogz_A 330 VFAEVSRALNKDGGDEVSDPTGFSPFPGSVNTLVFKLSSYVDRLRE-SHGIVPEFI-NPK----YSDETR-RSFKKPARI 402 (630)
T ss_dssp HHHHHHHHC------------CCCSSCEEEEEEEEEHHHHHHHHHH-HTTCCCCEE-CCC----BSSSSS-CCBSSCBCE
T ss_pred cCCHhHhhccCCCccccccccccccccccceeeeEEHHHHHHHHHh-ccCccceec-CCc----ccCCcc-cccCcchhh
Confidence 9999852 1233 444556788999999999999999888876 578899666 999 999885 578899999
Q ss_pred ccchhhhhhhcccccccccccceeeeccceeeeeeccCCCchhhhhccccCCCCCCChhhHHHHHHHHHHHHHHHCCccc
Q 002963 584 ECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKL 663 (862)
Q Consensus 584 E~~Mqd~~~~F~~~y~~~~~k~~f~~~~Rf~~fsPvKN~~~sa~k~~~~~~~~~~dsp~ta~~dl~~~~~~~L~~aG~~v 663 (862)
||||||++++|+. ...++++++++| .+|+||||+..+|+++...+ .+++||+|++.|||++|++||++||+++
T Consensus 403 Et~m~d~~~~F~~----~~~~v~~~~V~R-~~F~PVKn~~~~a~~k~~~g--~~~~sp~t~~~dly~~~~~~L~~aG~~v 475 (630)
T 3ogz_A 403 ESLMQDIALLFSE----DDYRVGGTVFER-FSYQPVKNSLEEAAGLVAQG--NGAYCAATGEAAFYELQRRRLKAIGLPL 475 (630)
T ss_dssp ECCGGGGGGGCCT----TTCCEEEEECCG-GGCCBCCBCHHHHHHHHHTT--CCCCBHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hhHHHHHHHhccc----cCcceeEEEECC-CeeecccCChhHhhhhhccC--CCcCChHHHHHHHHHHHHHHHHHcCcee
Confidence 9999999999962 344788999999 99999999999998888765 3578999999999999999999999999
Q ss_pred CC---cc---cCCc-ccccCCCeEEEecCCcccc--HHHHhhhcCC--C-CCCCCcEEEEEEceEEEee--eeeeEEEEe
Q 002963 664 PE---IE---GNDK-YIDDGPPYLILLHPALGLL--WEVTRQKFKG--G-SVSKGSELQIEVAEFLWRN--LDGSLIIVA 729 (862)
Q Consensus 664 p~---~~---~~~~-~~~~gP~~~I~L~P~~~~~--~~~~~~k~~g--g-sIs~~S~L~veG~dv~~~~--ldGslvI~a 729 (862)
+. +. +++. +++.||. |+|+|+|+++ |+++++||++ + +|+++|+|+|+|+ |+|++ |||+|+|.|
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~P~--i~l~p~~~~~~~~~~~~~k~~~~~~~~i~~~S~L~veg~-v~~~~l~LdG~lvI~a 552 (630)
T 3ogz_A 476 FYSSQPEVTVAKDAFGVRLFPI--IVLDTVCASSGSLDDLARVFPTPEKVHIDQHSTLIVEGR-VIIESLELYGALTIRG 552 (630)
T ss_dssp CCCCSCSEEETTTTEEECCCSE--EEECHHHHTTCCHHHHHHHCSSGGGEEECTTCEEEEESS-EEESCEEEESEEEEEC
T ss_pred cccccchhhhhcCccccCCCCE--EEEeccccccccHHHHHHHhCCCCCceecCCcEEEEEEE-EEEEEEEEeeEEEEEc
Confidence 84 32 5677 7889995 9999999999 9999999999 6 8999999999998 99999 999999999
Q ss_pred ccCCCCccccCCCccceecccccceEEEeeeEEeeCceeeecC----CC---------ccccccceeeeEEEEEEecCce
Q 002963 730 ENVMGSTRIADNGESILQYGYRCGRCKLNNVKVLNKGIDWDCG----DN---------TYWKHDVQWFEALKVILHGNAE 796 (862)
Q Consensus 730 ~~~~g~~~~~~~g~~i~~~~~~~g~~~~~~~~V~N~G~~~~~~----~~---------~~w~~~~~r~e~~~i~~~g~~e 796 (862)
++ |+.. .|+ |++++ +|+|+||.|.++ +. .++...++|.|.+.+.+.-++|
T Consensus 553 ~~--~~~~-----~~~---------v~~~~-~v~n~g~~~~~~~~~~~~~~~~~~~~~~irg~~~~~~e~~~~~~~~~~~ 615 (630)
T 3ogz_A 553 PT--DSMA-----LPH---------VVRNA-VVRNAGWSVHAILSLCAGRDSRLSEVDRIRGFVLKKTAMAVMDCNTKGE 615 (630)
T ss_dssp CS--STTS-----CCE---------EECSE-EEECCCCEEEECCTTC----CCCCHHHHTTTEEEECCCCEEECC-----
T ss_pred CC--CCcc-----Cce---------EEecc-eEecCCcEEEEcccccccccCCCChhhcccceeEEeeeEEEEEecCCCc
Confidence 95 4421 233 88888 999999999999 31 3788999999999999999999
Q ss_pred eEee
Q 002963 797 FEAS 800 (862)
Q Consensus 797 f~a~ 800 (862)
++|.
T Consensus 616 ~~~~ 619 (630)
T 3ogz_A 616 SEAG 619 (630)
T ss_dssp ----
T ss_pred cccC
Confidence 9874
No 2
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*
Probab=100.00 E-value=2.4e-85 Score=745.97 Aligned_cols=444 Identities=18% Similarity=0.207 Sum_probs=378.5
Q ss_pred cHHHHHHHHHHcCCccccccCCccchhhhhhhhHHHHHHHHHhhhhccccCCCcccchhhcchhhHHHHHHHHHHHHHH-
Q 002963 135 DQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEI- 213 (862)
Q Consensus 135 ~~~~L~~~L~~~gQeHll~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~Ll~qL~~l- 213 (862)
++..|+++|.++||+|||++|++ |+++ +|++|++||..+
T Consensus 5 ~~~~l~~~l~~~gQ~hl~~~~~~-------------------------------------l~~~---ek~~l~~ql~~~~ 44 (486)
T 2yqc_A 5 SQQQIIDSFKQANQDQLFQYYDS-------------------------------------LTID---QQQEFIDQLSTIE 44 (486)
T ss_dssp CHHHHHHHHHHTTCGGGGTTGGG-------------------------------------SCHH---HHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHcCcHHHhhhhcc-------------------------------------CCHH---HHHHHHHHHHhCc
Confidence 57899999999999999999555 6665 899999999999
Q ss_pred hccccCcChHHHHHHHHHHHHhcccccccccccccccccccccccc-c-cCCCCcccCC---ChHHHHHHHHHhhhccC-
Q 002963 214 EQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLE-I-HVPSGLDLSQ---NTEYAAQAALWGIEGLP- 287 (862)
Q Consensus 214 d~~y~~~ggl~~Y~~~a~~ll~~s~~~~~~~~~~~~~~~~~~~~d~-~-~vP~g~~l~~---~~~~~~~~e~~G~e~L~- 287 (862)
|. .++..|+++|.+ .++ . +++++ + ++|++..+++ +++....++++|+++|+
T Consensus 45 d~-----~~l~~~~~~~~~---~~~----~-----------~~~~~~i~p~p~~~~~~~~~~~~~~~~~~~~~G~~~i~~ 101 (486)
T 2yqc_A 45 EP-----AKLISTVEQAIQ---FSQ----T-----------NSTSRNFTQLPNEQTASTLDLSKDILQNWTELGLKAIGN 101 (486)
T ss_dssp SH-----HHHHHHHHHHHH---HTC-------------------CCCEECCCGGGEEETTTSCHHHHHHHHHHHHHHHHT
T ss_pred CH-----HHHHHHHHHHHh---ccc----c-----------ccccccccCCChhhccccccCChHHHHHHHHHHHHHHhh
Confidence 86 689999999985 221 1 12333 4 7777765543 55677788899999995
Q ss_pred -cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcC--CcccceEEEecCCCCCchH
Q 002963 288 -ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYG--KQCITPVAIMTSSAKNNHE 364 (862)
Q Consensus 288 -kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G--~~~~IPl~IMTS~~k~The 364 (862)
|+|+|+||||+|||||++.||+ |+||+++ +||||||+++++|+++++++.+++| +.+.||||||||+ .||+
T Consensus 102 gkvavvlLaGG~GTRLg~~~PK~--l~~v~l~--~gk~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~--~t~~ 175 (486)
T 2yqc_A 102 GEVAVLLMAGGQGTRLGSSAPKG--CFNIELP--SQKSLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSG--PTRN 175 (486)
T ss_dssp TCEEEEEEEESBCGGGTCSSBGG--GCBCCCT--TCCBHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECG--GGHH
T ss_pred CCeEEEEEcCCccccCCCCCCCc--cceecCC--CCCcHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECC--CCHH
Confidence 8999999999999999999999 9999988 9999999999999999999988887 7789999999999 7999
Q ss_pred HHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCC-cccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEE
Q 002963 365 RITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDG-QWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVR 443 (862)
Q Consensus 365 ~T~~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dg-ki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~ 443 (862)
.|++||++|+|||++.++|+||+|+++||++ .|| ++++++++.++|+|+||||+|.+|+++|+||+|+++|++|++|+
T Consensus 176 ~t~~~~~~~~~fgl~~~~v~~f~Q~~~P~i~-~dg~~i~l~~~~~i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~ 254 (486)
T 2yqc_A 176 ATESFFIENNYFGLNSHQVIFFNQGTLPCFN-LQGNKILLELKNSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMY 254 (486)
T ss_dssp HHHHHHHHTGGGGSCGGGEEEEECCEEECBC-TTSSSBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEE
T ss_pred HHHHHHhhccccCCCcceEEEEecccceeEc-CCCCccccCCCCccccCcCCchHHHHHHHHcCcHHHHHhcCCeEEEEE
Confidence 9999999999999999999999999999999 489 99999999999999999999999999999999999999999999
Q ss_pred eCCCccccc-cHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCC
Q 002963 444 QVSNVVAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSS 522 (862)
Q Consensus 444 qvDN~La~v-DP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~d 522 (862)
|+||+||++ ||.| +|+++.+++++++++ ++|+.++|++|++|.. ..||+ ++||||+|+|++. .+....+
T Consensus 255 ~vDN~l~~~~Dp~~---lg~~~~~~~~~~~~v-v~k~~~~e~~Gvl~~~-~~dg~----~~vvEy~E~~~~~-~~~~~~~ 324 (486)
T 2yqc_A 255 CVDNCLVKVADPIF---IGFAIAKKFDLATKV-VRKRDANESVGLIVLD-QDNQK----PCVIEYSEISQEL-ANKKDPQ 324 (486)
T ss_dssp ETTBTTCCTTCHHH---HHHHHHHTCSEEEEE-EECCSTTCCCCEEEEE-TTTTE----EEEECGGGSCHHH-HHCEETT
T ss_pred CCCCceeeccCHHH---HHHHHHcCCCEEEEE-EEcCCCCCceeEEEEE-ecCCC----EEEEEEecCCHHH-hhccccc
Confidence 999999987 9954 899999999999997 7778899999999971 12898 9999999999985 2222222
Q ss_pred --CCccccCc-cceeeeEEeHHHHHhhhcccccCC---ccccccccCCCceeecC-CCCc---cccCcceeccchhhhhh
Q 002963 523 --NGLQADFP-ANTNILYVDLASAELVGSSENERS---LPGMVLNTKKPIVYMDN-FGDT---HSVPGGRLECTMQNIAD 592 (862)
Q Consensus 523 --g~l~S~F~-~Ninn~~fsL~~l~~vl~~~~~~~---Lp~hIanpKKkIpy~D~-~g~~---~~~~~~rLE~~Mqd~~~ 592 (862)
|.+ .|. +|||||||++++|++++.+ ..+. ||+|++. |||||+|. .|.. ..++++||||||||++.
T Consensus 325 ~~~~~--~~~~~Ni~~~~~~l~~L~~~l~~-~~~~~~~lp~~v~~--Kki~~~d~~~g~~~~p~~pn~~klE~~~~d~~~ 399 (486)
T 2yqc_A 325 DSSKL--FLRAANIVNHYYSVEFLNKMIPK-WISSQKYLPFHIAK--KKIPSLNLENGEFYKPTEPNGIKLEQFIFDVFP 399 (486)
T ss_dssp EEEEE--SSCEEEEEEEEEEHHHHHHHHHH-HTTCTTTSCCEEEE--ECCCEECTTTCCEECCSSCCEEEEECCGGGGGG
T ss_pred ccccc--cccceeEEEEEEeHHHHHHHHHh-hcCcccCCcceEec--cccCccccccCeeccCCCCCeeeeeehHhhHHh
Confidence 333 255 4999999999999997765 4566 9999987 89999996 4532 34568899999999888
Q ss_pred hcccccccccccceeeeccceeeeeeccCCCchhhhhccccCCCCCCChhhHHHHHHHHHHHHHHHCCcccCCcccCCcc
Q 002963 593 NFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKY 672 (862)
Q Consensus 593 ~F~~~y~~~~~k~~f~~~~Rf~~fsPvKN~~~sa~k~~~~~~~~~~dsp~ta~~dl~~~~~~~L~~aG~~vp~~~~~~~~ 672 (862)
.|. ..++++++++|+.+|+||||+++++ .|||+||+.|+|++|++||++||+++++. ..
T Consensus 400 ~~~------l~~~~~~~V~R~~~FsPvKn~~~~~-----------~dsp~ta~~~l~~~~~~~l~~aG~~~~~~----~~ 458 (486)
T 2yqc_A 400 SVE------LNKFGCLEVDRLDEFSPLKNADGAK-----------NDTPTTCRNHYLERSSKWVIQNGGVIDNQ----GL 458 (486)
T ss_dssp GSC------GGGEEEEEECHHHHCCBCCSCTTSS-----------SSSHHHHHHHHHHHHHHHHHHTTCEECTT----CC
T ss_pred hcc------cCceEEEEECcccceeeecCCCCCC-----------CCCHHHHHHHHHHHHHHHHHHCCCeecCC----Cc
Confidence 753 3477889999999999999987653 47999999999999999999999999642 24
Q ss_pred cccCCCeEEEecCC
Q 002963 673 IDDGPPYLILLHPA 686 (862)
Q Consensus 673 ~~~gP~~~I~L~P~ 686 (862)
+|++|. |.+...
T Consensus 459 ~eisp~--~sy~ge 470 (486)
T 2yqc_A 459 VEVDSK--TSYGGE 470 (486)
T ss_dssp CBCCTT--TCSSST
T ss_pred EEEcce--eeECCC
Confidence 678896 666644
No 3
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A
Probab=100.00 E-value=1.5e-81 Score=713.15 Aligned_cols=422 Identities=17% Similarity=0.189 Sum_probs=329.1
Q ss_pred cchhhHHHHHHHHHHHHHHhccccCcChHHHHHHHHHHHHhccccccccccccccccccccccccc-cCCCCcccCCChH
Q 002963 195 LEIEQVKDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEI-HVPSGLDLSQNTE 273 (862)
Q Consensus 195 l~~~~~~e~~~Ll~qL~~ld~~y~~~ggl~~Y~~~a~~ll~~s~~~~~~~~~~~~~~~~~~~~d~~-~vP~g~~l~~~~~ 273 (862)
|+++ +|..|..|++.+.. +| ++++.+... .. .|+.+ ++|++...++.+.
T Consensus 63 l~~~---~~~~~~~el~~f~~----------lf---~r~l~~~~~--~~------------~~~~i~p~p~~~~~~~~~l 112 (528)
T 3r3i_A 63 ASSH---EFEHTKKDLDGFRK----------LF---HRFLQEKGP--SV------------DWGKIQRPPEDSIQPYEKI 112 (528)
T ss_dssp CCTT---TTHHHHHHHHHHHH----------HH---HHHHHC---------------------CCCCCCCTTTSEEHHHH
T ss_pred cCHH---HHHHHHHHHHHHHH----------HH---HHHHhhccC--CC------------CHHHCcCCCHHHccCHhhc
Confidence 6554 78999998877754 33 444544310 11 24556 6666666555432
Q ss_pred HHHHHHH--HhhhccCcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccce
Q 002963 274 YAAQAAL--WGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITP 351 (862)
Q Consensus 274 ~~~~~e~--~G~e~L~kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IP 351 (862)
. .++. ....+++|+|||+||||||||||+++||+ +|||. +|+||||++++||++++ ++|| +.||
T Consensus 113 ~--~~~~~~~~~~~l~kvavvlLaGGlGTRLG~~~PK~--~i~V~----sgktflql~~eqI~~l~----~~~g--~~IP 178 (528)
T 3r3i_A 113 K--ARGLPDNISSVLNKLVVVKLNGGLGTSMGCKGPKS--LIGVR----NENTFLDLTVQQIEHLN----KTYN--TDVP 178 (528)
T ss_dssp T--TSCCCCSSCTTCTTEEEEEECCCBCTTTTCSSBGG--GSEEE----TTEEHHHHHHHHHHHHH----HHHT--CCCC
T ss_pred C--CccccchhhhhcCceEEEEeCCCCccccCCCCCcc--ceecC----CCCcHHHHHHHHHHHHH----HHhC--CCCC
Confidence 1 1111 12456789999999999999999999999 99996 99999999999999999 5678 8999
Q ss_pred EEEecCCCCCchHHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccC------CCCccccCCCCcHHHHHHHh
Q 002963 352 VAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMR------PFAPVCKPGGHGAIWKLAHD 425 (862)
Q Consensus 352 l~IMTS~~k~The~T~~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~------~~~i~~~P~GHGdIy~aL~~ 425 (862)
||||||+ +||++|++||++|+||| .||++|+|+++||++ .+|+++++. +++++|+|+||||||.+|++
T Consensus 179 l~IMTS~--~T~~~T~~~f~k~~~fg---~~V~~F~Q~~~P~i~-~dg~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~ 252 (528)
T 3r3i_A 179 LVLMNSF--NTDEDTKKILQKYNHCR---VKIYTFNQSRYPRIN-KESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYN 252 (528)
T ss_dssp EEEEECT--TTHHHHHSSCGGGTTSS---CCEEEEECCCBCCEE-TTTCCCC-------------CBCCBTTTHHHHHHH
T ss_pred EEEEecc--chhHHHHHHHHhcCccC---CCeEEEEeCCeeeEe-cCCceecccccccCCCcceeeCcCCChHHHHHHHH
Confidence 9999999 79999999999999999 599999999999999 679999975 88999999999999999999
Q ss_pred cCchHHHHHcCceEEEEEeCCCccccccHhHHHHhhhhhhc----CCceeEEEeeecCCCCcCceEEEEeecCCCccccc
Q 002963 426 KGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHH----GKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYG 501 (862)
Q Consensus 426 sGlLd~l~~~Gikyi~V~qvDN~La~vDP~il~flG~~~~~----~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~ 501 (862)
+|+||+|+++|+||+||+||||+||++||.| +|+++.+ +++|++++ ++|+.|+|++|+||+ +||+
T Consensus 253 sGlLd~l~~~Gieyi~v~nvDNlga~vDp~~---Lg~~~~~~~~~~~d~~~kV-v~Kt~~dek~Gvl~~---~dGk---- 321 (528)
T 3r3i_A 253 SGLLDTFIGEGKEYIFVSNIDNLGATVDLYI---LNHLMNPPNGKRCEFVMEV-TNKTRADVKGGTLTQ---YEGK---- 321 (528)
T ss_dssp HSHHHHHHHTTCCEEEEEETTBTTCCCCHHH---HHHHSSCSSSCCCSEEEEE-CCCCTTCCSSCEEEC---SSSS----
T ss_pred CChHHHHHhcCCEEEEEEccCCcccccCHHH---HHHHHhcccccCCcEEEEE-eEccccCCcccEEEE---ECCe----
Confidence 9999999999999999999999999999965 8999998 99999997 888999999999998 7999
Q ss_pred eEEEEecccCccCCCCCCCCCCCccccCcc-ceeeeEEeHHHHHhhhcccccCCccccccccCCCceeecCCCCccccCc
Q 002963 502 LSCIEYTEFDKFGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPG 580 (862)
Q Consensus 502 ~~vVEYsEl~~~~~~~~~~~dg~l~S~F~~-Ninn~~fsL~~l~~vl~~~~~~~Lp~hIanpKKkIpy~D~~g~~~~~~~ 580 (862)
++||||+|+|++... +.++.++|++ |||||||+|++|+++++. ....||.|+ ||| ++|. .+++
T Consensus 322 ~~vvEyseip~e~~~-----~~~g~~~f~~~Ntnnlw~~L~~L~~v~~~-~~l~Lp~iv-n~K----~vd~-----~~~v 385 (528)
T 3r3i_A 322 LRLVEIAQVPKAHVD-----EFKSVSKFKIFNTNNLWISLAAVKRLQEQ-NAIDMEIIV-NAK----TLDG-----GLNV 385 (528)
T ss_dssp CEEECTTSSCGGGTT-----TSSCSSSCCCCEEEEEEEEHHHHHHHHHT-TCCCCCCEE-EEE----CCSS-----SSCE
T ss_pred EEEEEecCCChhHhh-----ccCCcccCCeEEEEEEEEEHHHHHHHHHh-CCCCCCcee-cCc----ccCC-----CCCE
Confidence 999999999999732 2345667996 999999999999999986 567888777 766 5553 2479
Q ss_pred ceeccchhhhhhhcccccccccccceeeeccceeeeeeccCCCchhhhhccccCCCCCCChhhHHHHHHHHHHHHHHHCC
Q 002963 581 GRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCH 660 (862)
Q Consensus 581 ~rLE~~Mqd~~~~F~~~y~~~~~k~~f~~~~Rf~~fsPvKN~~~sa~k~~~~~~~~~~dsp~ta~~dl~~~~~~~L~~aG 660 (862)
+|||++|+|++..|++ ....+++|.- |+||||.. + + .++++.-
T Consensus 386 iqlEt~igd~i~~f~~--------~~~i~VpR~r-F~PvKn~s-d-------------------L--------ll~~Sdl 428 (528)
T 3r3i_A 386 IQLETAVGAAIKSFEN--------SLGINVPRSR-FLPVKTTS-D-------------------L--------LLVMSNL 428 (528)
T ss_dssp EEEEBCSTTCSTTSSS--------CCCEECCGGG-CCBCCSHH-H-------------------H--------HHHHSTT
T ss_pred EEeHHHHHHHHHhccC--------cEEEEEehHH-cccccchH-H-------------------H--------HHHhcce
Confidence 9999999999998862 2245667775 89999932 1 1 2233333
Q ss_pred cccCCcc-cCCcccccCCCeEEEecCCccccHHHHhhhcCC-CCCCCCcEEEEEEceEEEee--eeeeEEEEecc
Q 002963 661 IKLPEIE-GNDKYIDDGPPYLILLHPALGLLWEVTRQKFKG-GSVSKGSELQIEVAEFLWRN--LDGSLIIVAEN 731 (862)
Q Consensus 661 ~~vp~~~-~~~~~~~~gP~~~I~L~P~~~~~~~~~~~k~~g-gsIs~~S~L~veG~dv~~~~--ldGslvI~a~~ 731 (862)
+.+..-. ........+..++|.|+|. |+++++|.+||++ .+|.++++|+|+|+.++.++ |+|+|+|.|++
T Consensus 429 y~l~~g~l~~~~~r~~~~~P~v~L~~~-~~~v~~f~~rf~~iP~l~~~~~LtV~Gdv~fg~~v~l~G~v~i~~~~ 502 (528)
T 3r3i_A 429 YSLNAGSLTMSEKREFPTVPLVKLGSS-FTKVQDYLRRFESIPDMLELDHLTVSGDVTFGKNVSLKGTVIIIANH 502 (528)
T ss_dssp SEEETTEEECCSSCSSCCCCEEEECTT-SCSHHHHHHHCSSCCEEEEEEEEEEESEEECCTTCEEEEEEEEECCT
T ss_pred eEeeCCeEEecccccCCCCCEEEeCcc-cCcHHHHHHhCCCCCCcccCCEEEEecceEECCCcEEEEEEEEEcCC
Confidence 3332111 0010111232237999999 9999999999998 58999999999996444444 99999999884
No 4
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*
Probab=100.00 E-value=3.7e-80 Score=706.07 Aligned_cols=430 Identities=20% Similarity=0.234 Sum_probs=369.5
Q ss_pred ccHHHHHHHHHHcCCccccccCCccchhhhhhhhHHHHHHHHHhhhhccccCCCcccchhhcchhhHHHHHHHHHHHHHH
Q 002963 134 LDQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEI 213 (862)
Q Consensus 134 ~~~~~L~~~L~~~gQeHll~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~Ll~qL~~l 213 (862)
|++..|+++|.++||+|||++|++ |+++ +|++|++||..+
T Consensus 1 ~~~~~l~~~l~~~gQ~hl~~~~~~-------------------------------------l~~~---ek~~l~~ql~~~ 40 (505)
T 1jv1_A 1 MNINDLKLTLSKAGQEHLLRFWNE-------------------------------------LEEA---QQVELYAELQAM 40 (505)
T ss_dssp CCHHHHHHHHHHTTCGGGGTTGGG-------------------------------------SCHH---HHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHcCcHHHHhhhhc-------------------------------------CCHH---HHHHHHHHHHHh
Confidence 456779999999999999999554 6665 999999999999
Q ss_pred hccccCcChHHHHHHHHHHHHhccccccccccccccccccccccccc-cCCCCcccCC--ChHHHHHHHHHhhhcc--Cc
Q 002963 214 EQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEI-HVPSGLDLSQ--NTEYAAQAALWGIEGL--PE 288 (862)
Q Consensus 214 d~~y~~~ggl~~Y~~~a~~ll~~s~~~~~~~~~~~~~~~~~~~~d~~-~vP~g~~l~~--~~~~~~~~e~~G~e~L--~k 288 (862)
|. .++..|+++|++.+..|+. .. +..+.+ ++|++...++ +.+....+++.|++++ +|
T Consensus 41 d~-----~~~~~~~~~~~~~~~~s~~--~~-----------~~~~~i~p~p~~~~~~~~~~~~~~~~~~~~Gl~~i~~~k 102 (505)
T 1jv1_A 41 NF-----EELNFFFQKAIEGFNQSSH--QK-----------NVDARMEPVPREVLGSATRDQDQLQAWESEGLFQISQNK 102 (505)
T ss_dssp CH-----HHHHHHHHHHHHCC------------------------CCBCCCGGGEEETTTTGGGHHHHHHHHHHHHHTTC
T ss_pred CH-----HHHHHHHHHHHHhhhhccc--cC-----------cccccccCCChHhcccccCChHHHHHHHHHhHHhhccCc
Confidence 98 5799999999887665421 11 011234 6777766555 4456677888999998 59
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHHH
Q 002963 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (862)
Q Consensus 289 vAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~~ 368 (862)
+|+|+||||+|||||++.||+ |+||+++ +|+||||+++++|+++|+++.+++|..+.|||+||||+ .||+.|++
T Consensus 103 vavViLAGG~GTRLg~~~PK~--l~pv~~~--~gk~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~--~t~e~t~~ 176 (505)
T 1jv1_A 103 VAVLLLAGGQGTRLGVAYPKG--MYDVGLP--SRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSG--RTMESTKE 176 (505)
T ss_dssp EEEEEECCCCCCTTSCSSCGG--GCCCCCT--TCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECT--TTHHHHHH
T ss_pred eEEEEEcCCccccCCCCCCCc--cceeecC--CCCcHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecC--CCHHHHHH
Confidence 999999999999999999999 9999987 99999999999999999999889997789999999999 79999999
Q ss_pred HHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCc
Q 002963 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (862)
Q Consensus 369 fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvDN~ 448 (862)
||++|+|||+++++|++|+|+++||++ .+|++++++++.++|+|+||||+|++|+++|+|++|+++|++|++|+|+||+
T Consensus 177 ~f~~~~~fGl~~~~I~~f~Q~~~P~i~-~~g~~~l~~~~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n~Dn~ 255 (505)
T 1jv1_A 177 FFTKHKYFGLKKENVIFFQQGMLPAMS-FDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNI 255 (505)
T ss_dssp HHHHTGGGGSCGGGEEEEECCEEECEE-TTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBT
T ss_pred HHHhhhhcCCCcCceEEEEecceEEEc-CCCcccccCCcccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEEECCcc
Confidence 999999999999999999999999999 5899999999999999999999999999999999999999999999999999
Q ss_pred cccc-cHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCccc
Q 002963 449 VAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQA 527 (862)
Q Consensus 449 La~v-DP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~S 527 (862)
|+.+ ||.| +|+++.+++++.+++ ++|+.+++++|+||. .||+ +++|||+|+|++. .+....+|.+
T Consensus 256 L~~~~d~~~---lg~~~~~~~~~~~~v-~~k~~~~e~~Gvl~~---~dg~----~~vvEy~E~p~~~-~~~~~~~g~~-- 321 (505)
T 1jv1_A 256 LVKVADPRF---IGFCIQKGADCGAKV-VEKTNPTEPVGVVCR---VDGV----YQVVEYSEISLAT-AQKRSSDGRL-- 321 (505)
T ss_dssp TCCTTCHHH---HHHHHHTTCSEEEEE-EECCSTTCSCCEEEE---ETTE----EEEECGGGSCHHH-HHCBCTTSSB--
T ss_pred ccccchHHH---HHHHHHcCCCEEEEE-EEccCCccCcceEEE---ECCe----EEEEEEeeCCHHH-hhhccccccc--
Confidence 8876 9954 899999999999997 777788999999997 6898 8999999999986 2233334444
Q ss_pred cCcc-ceeeeEEeHHHHHhhhcccccCCccccccccCCCceeecCCCCcc---ccCcceeccchhhhhhhcccccccccc
Q 002963 528 DFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTH---SVPGGRLECTMQNIADNFLNTYSSRCY 603 (862)
Q Consensus 528 ~F~~-Ninn~~fsL~~l~~vl~~~~~~~Lp~hIanpKKkIpy~D~~g~~~---~~~~~rLE~~Mqd~~~~F~~~y~~~~~ 603 (862)
.|+. |||||||++++|+++.+. ..+.||+|++. |||||+|.+|... .++++||||||||++..|.
T Consensus 322 ~~~~~N~~~~~f~l~~L~~i~~~-~~~~l~~hv~~--Kkip~~d~~g~~v~P~~pn~~klE~~i~d~~~~~~-------- 390 (505)
T 1jv1_A 322 LFNAGNIANHFFTVPFLRDVVNV-YEPQLQHHVAQ--KKIPYVDTQGQLIKPDKPNGIKMEKFVFDIFQFAK-------- 390 (505)
T ss_dssp SSCEEEEEEEEEEHHHHHHHHHT-TGGGCCCEEEE--ECCCEECTTSCEECCSSCCEEEEECCGGGGGGGCS--------
T ss_pred ccceeeEEEEEecHHHHHHHHHh-hcccCCceecc--cccccccCCCCCcCCCCCCceeHHHHHHHHHhhcC--------
Confidence 3765 999999999999999875 56789999987 8999999766432 3466899999999888764
Q ss_pred cceeeeccceeeeeeccCCCchhhhhccccCCCCCCChhhHHHHHHHHHHHHHHHCCccc
Q 002963 604 KGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKL 663 (862)
Q Consensus 604 k~~f~~~~Rf~~fsPvKN~~~sa~k~~~~~~~~~~dsp~ta~~dl~~~~~~~L~~aG~~v 663 (862)
++++++++|+.+|+||||+.+++ + .|||+||+.|+|++|++||++||+++
T Consensus 391 ~~~~~~V~R~~~FsPvKn~~~~~------~----~dsp~ta~~~l~~~~~~~l~~ag~~~ 440 (505)
T 1jv1_A 391 KFVVYEVLREDEFSPLKNADSQN------G----KDNPTTARHALMSLHHCWVLNAGGHF 440 (505)
T ss_dssp SEEEEEECHHHHCCBCCSCTTSS------S----SSSHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred ceEEEEECcccceeeccCCCCCC------C----CCCHHHHHHHHHHHHHHHHHHCCCee
Confidence 67789999999999999987653 1 47999999999999999999999998
No 5
>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei}
Probab=100.00 E-value=3e-80 Score=698.13 Aligned_cols=378 Identities=16% Similarity=0.096 Sum_probs=313.6
Q ss_pred HhhhccCcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCC
Q 002963 281 WGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAK 360 (862)
Q Consensus 281 ~G~e~L~kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k 360 (862)
.|.++|+|+|||+||||||||||+++||+ +|||+ +|+||||++++||+++|+ ++| +.||||||||+
T Consensus 69 ~G~~~L~kvavvlLaGGlGTRLG~~~pKg--~~~v~----sgksflql~~eqI~~l~~----~~~--~~iPl~IMTS~-- 134 (484)
T 3gue_A 69 ENTALLRQAVVLKLNGGLGTGMGLNGPKS--LLQVK----NGQTFLDFTALQLEHFRQ----VRN--CNVPFMLMNSF-- 134 (484)
T ss_dssp CCHHHHTTEEEEEEECCCCGGGTCSSCGG--GSEEE----TTEEHHHHHHHHHHHHHH----HHT--CCCCEEEEECT--
T ss_pred HHHHHHhhcEEEEEcCCcccccCCCCCce--eeecC----CCCcHHHHHHHHHHHHHH----HcC--CCceEEEECCc--
Confidence 69999999999999999999999999999 99998 999999999999999994 567 89999999999
Q ss_pred CchHHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCccc-ccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceE
Q 002963 361 NNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWL-VMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKG 439 (862)
Q Consensus 361 ~The~T~~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~-l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Giky 439 (862)
+||++|++||++|+|||+++++|++|+|+++||++.+++.++ ++++++++|+|+||||+|.+|+++|+||+|+++|+||
T Consensus 135 ~T~~~T~~~~~k~~~Fgl~~~~v~~F~Q~~~P~i~~dg~~~i~~~~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Giey 214 (484)
T 3gue_A 135 STSGETKNFLRKYPTLYEVFDSDIELMQNRVPKIRQDNFFPVTYEADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRY 214 (484)
T ss_dssp TTHHHHHHHGGGCHHHHTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCE
T ss_pred chhHHHHHHHHhCcccCCCccceEEEEeCceeeEecCCCceeecCCCCceeeccCCchHHHHHHHhCCcHHHHHHcCCEE
Confidence 799999999999999999999999999999999995444434 4678899999999999999999999999999999999
Q ss_pred EEEEeCCCccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEe-------ecCCCccccceEEEEecccCc
Q 002963 440 ATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEK-------KNLDGKWAYGLSCIEYTEFDK 512 (862)
Q Consensus 440 i~V~qvDN~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~-------~~~dGk~~~~~~vVEYsEl~~ 512 (862)
+||+||||+++.+||.| +|||+.++++|++++ ++|+.++|+||+||+. .+.||+ +++|||+|+|+
T Consensus 215 i~v~~vDNL~a~~Dp~~---lG~~~~~~~d~~~kv-v~Kt~~dekgG~l~~~~~~~~~~~~~dG~----~~vvEyseip~ 286 (484)
T 3gue_A 215 MFISNGDNLGATLDVRL---LDYMHEKQLGFLMEV-CRRTESDKKGGHLAYKDVIDETTGQTRRR----FVLRESAQCPK 286 (484)
T ss_dssp EEEEETTCTTCCCCHHH---HHHHHHTTCSEEEEE-EECCTTCCSSEEEEEEC--------CCCE----EEEEEGGGSCG
T ss_pred EEEEcCCCcccccCHHH---HHHHHhcCCCEEEEE-EECCCCCCceeEEEEEccccccccCCCCC----EEEEEeccCCH
Confidence 99999999555459955 899999999999997 7777799999999982 123898 99999999999
Q ss_pred cCCCCCCCCCCCccccCcc-ceeeeEEeHHHHHhhhcccc--cCCccccccccCCCceeecCCCCccccCcceeccchhh
Q 002963 513 FGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSEN--ERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQN 589 (862)
Q Consensus 513 ~~~~~~~~~dg~l~S~F~~-Ninn~~fsL~~l~~vl~~~~--~~~Lp~hIanpKKkIpy~D~~g~~~~~~~~rLE~~Mqd 589 (862)
+...+.+..+| |.. ||||+|+++.+|++++++ . ...||+|++. | ++|.. ++.+++++||||||||
T Consensus 287 e~~~~f~~~~g-----~~~FNtnNi~~~l~~l~~~l~~-~~g~~~Lp~~vn~-K----~id~~-k~~~~~~iqlE~~~~d 354 (484)
T 3gue_A 287 EDEDSFQNIAK-----HCFFNTNNIWINLMELKKMMDE-QLGVLRLPVMRNP-K----TVNPQ-DSQSTKVYQLEVAMGA 354 (484)
T ss_dssp GGHHHHTCTTT-----SCEEEEEEEEEEHHHHHHHHHH-TTTCCCCCCEEEE-E----ESSTT-CTTSCEEEEEECCGGG
T ss_pred HHHhhhcCCCC-----ceEeEeeeEEEEHHHHHHHHHh-ccCcCCCCcEecc-c----eecCC-CCCCCCEeehHHHHHH
Confidence 87322122333 333 999999999999999986 3 3467989844 4 44654 3456789999999999
Q ss_pred hhhhcccccccccccceeeeccceeeeeeccCCCchhhhhccccCCCCCCChhhHHHHHHHHHHHHHHHCCcccCCcc--
Q 002963 590 IADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIE-- 667 (862)
Q Consensus 590 ~~~~F~~~y~~~~~k~~f~~~~Rf~~fsPvKN~~~sa~k~~~~~~~~~~dsp~ta~~dl~~~~~~~L~~aG~~vp~~~-- 667 (862)
++..|+ ++++.+++| .+|+||||.. +. .++++..+.+.+..
T Consensus 355 ~~~~~~--------~~~~ieV~R-~rF~PvKn~s-dL---------------------------l~~~Sdly~l~~~~~l 397 (484)
T 3gue_A 355 AISLFD--------RSEAVVVPR-ERFAPVKTCS-DL---------------------------LALRSDAYQVTEDQRL 397 (484)
T ss_dssp GGTTSS--------SEEEEECCG-GGCCCCSSHH-HH---------------------------HHHHSTTEEECTTSCE
T ss_pred HHHhCC--------ccEEEEECh-hhccccccch-HH---------------------------HHHhhhceeccCCceE
Confidence 999885 456788899 7999999932 21 23455555554321
Q ss_pred -cCCcccccCCCeEEEecCCccccHHHHhhhcCCC--CCCCCcEEEEEEceEEEee--eeeeEEEEecc
Q 002963 668 -GNDKYIDDGPPYLILLHPALGLLWEVTRQKFKGG--SVSKGSELQIEVAEFLWRN--LDGSLIIVAEN 731 (862)
Q Consensus 668 -~~~~~~~~gP~~~I~L~P~~~~~~~~~~~k~~gg--sIs~~S~L~veG~dv~~~~--ldGslvI~a~~ 731 (862)
.+..-....| +|.|+|.+|+++++|.+||++| ||.++++|+|+|+.++.++ |+|+|+|.|.+
T Consensus 398 ~~~~~~~~~~P--~v~L~~~~~~~v~~f~~rf~~giPsl~~~~~L~V~Gdv~fg~~v~l~G~v~i~~~~ 464 (484)
T 3gue_A 398 VLCEERNGKPP--AIDLDGEHYKMIDGFEKLVKGGVPSLRQCTSLTVRGLVEFGADVSVRGNVVIKNLK 464 (484)
T ss_dssp EECGGGTTCCC--EEEECTTTSSSHHHHHHHHTTCCCBCTTEEEEEEESSEEECTTCEEEEEEEEEECS
T ss_pred EeccccCCCCC--eEEECchhcCcHHHHHHhcCCCCCChhhCCEEEEecceEECCCcEEEEEEEEEcCC
Confidence 1111111235 6999999999999999999994 8999999999996555555 99999999984
No 6
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}
Probab=100.00 E-value=1e-77 Score=667.25 Aligned_cols=353 Identities=17% Similarity=0.234 Sum_probs=316.7
Q ss_pred HHHHHhhhcc--CcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhh-cCCcccceEE
Q 002963 277 QAALWGIEGL--PELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKL-YGKQCITPVA 353 (862)
Q Consensus 277 ~~e~~G~e~L--~kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~-~G~~~~IPl~ 353 (862)
++++.|+++| +|+|||+||||||||||++.||+ |+||+++ +||||||+++++|+++|+|+.+. +|..+.||||
T Consensus 22 ~~~~~Gl~~i~~gkvavvlLAGG~GTRLG~~~PK~--~~~Vgl~--~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~ 97 (405)
T 3oc9_A 22 EHYYRGLELISQGKTALITPAGGQGSRLGFEHPKG--MFVLPFE--IPKSIFQMTSERLLRLQELASEYSHQKNVMIHWF 97 (405)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSBCTTTTCCSBGG--GCEECSS--SCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCEEE
T ss_pred HHHHHHHHHHhcCceEEEEecCCCcccccCCCCCc--cccccCC--CCCcHHHHHHHHHHHHHHHHhhhccccCCCCCEE
Confidence 5668999999 49999999999999999999999 9999987 99999999999999999998776 7767899999
Q ss_pred EecCCCCCchHHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHH
Q 002963 354 IMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFH 433 (862)
Q Consensus 354 IMTS~~k~The~T~~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~ 433 (862)
||||+ .||++|++||++|+|||++++||++|+|+++||++ .||+++++++++++|+|+||||+|++|+++|+||+|+
T Consensus 98 IMtS~--~t~e~t~~~f~~~~~fGl~~~~i~~f~Q~~~P~i~-~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~ 174 (405)
T 3oc9_A 98 LMTNE--ETIEEINNYFKEHQYFGLSSEQIHCFPQGMLPVVD-FNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMN 174 (405)
T ss_dssp EEECT--TTHHHHHHHHHHTGGGGSCTTSEEEEECCEEECBC-TTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHH
T ss_pred EEeCC--ccHHHHHHHHHhCcccCCCccceEEEeeCceeEEe-cCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHH
Confidence 99999 79999999999999999999999999999999997 7899999999999999999999999999999999999
Q ss_pred HcCceEEEEEeCCCccccc-cHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCc
Q 002963 434 DNGRKGATVRQVSNVVAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDK 512 (862)
Q Consensus 434 ~~Gikyi~V~qvDN~La~v-DP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~ 512 (862)
++|++|++|+|+||+|+++ ||.| +||++.++++|++++ ++|+.++|++|+||+ .||+ ++||||+|+|+
T Consensus 175 ~~Gieyi~v~nvDN~L~~~~Dp~~---lg~~~~~~~d~~~kv-v~k~~~dek~Gvl~~---~dg~----~~vvEysei~~ 243 (405)
T 3oc9_A 175 EKGIKYSVAHNVDNILCKDVDPNM---IGYMDLLQSEICIKI-VKKGFKEEKVGVLVK---EQER----IKVVEYTELTD 243 (405)
T ss_dssp HHTCCEEEEECTTBTTCCSSCHHH---HHHHHHTTCSEEEEE-EECCSTTCSCCEEEE---ETTE----EEEECGGGCCT
T ss_pred hcCCEEEEEEeCCCcccccCCHHH---HHHHHHcCCCEEEEE-EECCCCCCccceEEE---ECCe----eEEEEEeeCCH
Confidence 9999999999999988887 9955 899999999999997 777889999999998 7999 99999999999
Q ss_pred cCCCCCCCCCCCccccCcc-ceeeeEEeHHHHHhhhcccccCCccccccccCCCceeecCCCCc---cccCcceeccchh
Q 002963 513 FGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDT---HSVPGGRLECTMQ 588 (862)
Q Consensus 513 ~~~~~~~~~dg~l~S~F~~-Ninn~~fsL~~l~~vl~~~~~~~Lp~hIanpKKkIpy~D~~g~~---~~~~~~rLE~~Mq 588 (862)
+ ++.+..+|.++ |++ ||+||+|+++||+++++ ..||+|+|+ |||||+|.+|+. ..++++|||+||+
T Consensus 244 e--~e~~~~~g~l~--fn~~Ni~~h~fs~~fL~~i~~----~~l~~h~a~--Kkip~~d~~g~~~~p~~~ngiklE~fif 313 (405)
T 3oc9_A 244 E--LNKQLSNGEFI--YNCGHISINGYSTSFLEKAAE----YQLPYHIAK--KKVPFVNEQGIVIHPSENNGIKKEIFFF 313 (405)
T ss_dssp T--TTCBCTTSCBS--SCEEEEEEEEEEHHHHHHHTT----CCCCCEEEE--ECCCEECTTSCEECCSSCCEEEEECCGG
T ss_pred H--HhhcCCCCcee--eccceeEeeecCHHHHHHhhh----ccCCcEEec--cccCccCCCCCCcccCCcceeehHHHHH
Confidence 8 55566677766 987 99999999999999983 369999999 999999988753 3467899999998
Q ss_pred hhhhhcccccccccccceeeeccceeeeeeccCCCchhhhhccccCCCCCCChhhHHHHHHHHHHHHHHHCCcccCCccc
Q 002963 589 NIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIEG 668 (862)
Q Consensus 589 d~~~~F~~~y~~~~~k~~f~~~~Rf~~fsPvKN~~~sa~k~~~~~~~~~~dsp~ta~~dl~~~~~~~L~~aG~~vp~~~~ 668 (862)
|++..|. +++..+++|..+|+|+||+++.+ .|||+||+.|++++|++|+.++|+.+.+..
T Consensus 314 d~f~~~~--------~~~~~eV~R~~eF~PlKn~~g~~-----------~dsp~tar~~l~~~~~~wl~~ag~~~~~~~- 373 (405)
T 3oc9_A 314 DVFPLAT--------KVSIFEIQRFIEFSALKNSLNES-----------FDNVNTVKRDWYRLNIYYLKKAGAIVDDSK- 373 (405)
T ss_dssp GGGGGCS--------CEEEEECCHHHHCCBCCCCTTSS-----------SSSHHHHHHHHHHHHHHHHHHTTCEEECSS-
T ss_pred HHHHhcc--------ceEEEEEChHhcccceecCCCCC-----------CCCHHHHHHHHHHHHHHHHHHCCCEEcCCC-
Confidence 8887653 56678899999999999988653 479999999999999999999999885431
Q ss_pred CCcccccCCC
Q 002963 669 NDKYIDDGPP 678 (862)
Q Consensus 669 ~~~~~~~gP~ 678 (862)
...+|+.|.
T Consensus 374 -~~~~Eispl 382 (405)
T 3oc9_A 374 -SPICEISFR 382 (405)
T ss_dssp -CCCEEECTT
T ss_pred -CccEEeCcc
Confidence 123455663
No 7
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*
Probab=100.00 E-value=2.6e-77 Score=680.94 Aligned_cols=404 Identities=16% Similarity=0.074 Sum_probs=343.7
Q ss_pred HhhhccCcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCC
Q 002963 281 WGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAK 360 (862)
Q Consensus 281 ~G~e~L~kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k 360 (862)
+|+++|+++|||+||||+|||||++.||+ |+||+ +||||||+++++|++++. ++| +.||||||||+
T Consensus 68 ~g~~~l~k~avViLAGGlGTRLg~~~PK~--llpV~----~gk~fLe~~ie~l~~~~~----~~g--~~ip~viMtS~-- 133 (505)
T 2oeg_A 68 CDNAVLQSTVVLKLNGGLGTGMGLCDAKT--LLEVK----DGKTFLDFTALQVQYLRQ----HCS--EHLRFMLMDSF-- 133 (505)
T ss_dssp CCHHHHHTEEEEEEECCCCGGGTCCSCGG--GSEEE----TTEEHHHHHHHHHHHHHH----HTC--TTCEEEEEECH--
T ss_pred HHHHHHhcceEEEEcCCcccccCCCCCCc--ccccC----CCCcHHHHHHHHHHHHHH----hcC--CCcCEEEEeCC--
Confidence 79999999999999999999999999999 99998 899999999999999984 567 78999999999
Q ss_pred CchHHHHHHHH-HhCCCCCCCCceEEEecCCeeeEecCCCccc-ccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCce
Q 002963 361 NNHERITSLCE-RLRWFGRGQSSFQLFEQPLVPAVDAEDGQWL-VMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRK 438 (862)
Q Consensus 361 ~The~T~~fle-~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~-l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gik 438 (862)
.||+.|++||+ +|+|||+++++|++|+|+++||+++++++++ ++++..++|+|+||||+|++|+++|+|++|.++|++
T Consensus 134 ~t~e~t~~~f~~~~~~fGl~~~~I~~f~Q~~~P~~~~~~~~~i~~~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e 213 (505)
T 2oeg_A 134 NTSASTKSFLKARYPWLYQVFDSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYR 213 (505)
T ss_dssp HHHHHHHHHHHHHCHHHHTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCTTHHHHHHHHTTHHHHHHHTTCC
T ss_pred CCHHHHHHHHhhhhhccCCCccceEEEEEcCEEeEecCCCceeecCCCCccccCcCCchHHHHHHHhcChHHHHHhcCCC
Confidence 79999999999 9999999999999999999999997666877 677778999999999999999999999999999999
Q ss_pred EEEEEeCCCccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeec-----CCCc--cccc-eEEEEeccc
Q 002963 439 GATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKN-----LDGK--WAYG-LSCIEYTEF 510 (862)
Q Consensus 439 yi~V~qvDN~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~-----~dGk--~~~~-~~vVEYsEl 510 (862)
|++|+|+||+.+.+||.| +|++..+++++.+++ ++|..+++++|++|.. + .||+ ..|. ++++||+|+
T Consensus 214 ~i~V~N~DNL~~~~D~~l---lg~~~~~~ad~~~~v-~~k~~~d~~~Gvl~~~-~~~~~~~dg~~nvEyn~~~llEyse~ 288 (505)
T 2oeg_A 214 YMFVSNGDNLGATIDKRV---LAYMEKEKIDFLMEV-CRRTESDKKGGHLARQ-TVYVKGKDGQPDAEKRVLLLRESAQC 288 (505)
T ss_dssp EEEEECTTCTTCCCCHHH---HHHHHHHTCSEEEEE-EECCTTCCSSEEEEEE-EEEECCSSSCCCEEEEEEEEEEGGGS
T ss_pred EEEEEECCccccccCHHH---HHHHHhcCCcEEEEE-EEecCCccceeEEEEe-cccccccCCccccccCceeEEEeccC
Confidence 999999999755669944 899999999999997 6667788999999973 3 6776 1121 679999999
Q ss_pred CccCCCCCCCCCCCccccCcc-ceeeeEEeHHHHHhhhccc-ccCCccccccccCCCceeecCCCCccccCcceeccchh
Q 002963 511 DKFGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSE-NERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQ 588 (862)
Q Consensus 511 ~~~~~~~~~~~dg~l~S~F~~-Ninn~~fsL~~l~~vl~~~-~~~~Lp~hIanpKKkIpy~D~~g~~~~~~~~rLE~~Mq 588 (862)
|++... +.++.+.|++ |||||||+|+||+++++.. ....||+|++. |+|||.|+ .+++++|||||||
T Consensus 289 p~e~~~-----~~~g~~~f~~~Ninn~~~~l~~l~~~~~~~~~~~~Lp~~vn~--K~i~~~d~----~~~~~~qlE~~~~ 357 (505)
T 2oeg_A 289 PKADME-----SFQDINKYSFFNTNNLWIRLPVLLETMQEHGGTLPLPVIRNE--KTVDSSNS----ASPKVYQLETAMG 357 (505)
T ss_dssp CGGGHH-----HHHCTTTTCEEEEEEEEEEHHHHHHHHHHTTSSCCCCCEEEE--EESSSSCT----TSCEEEEEECCGG
T ss_pred Chhhhh-----cccCccccCeeEEEEEEEEHHHHHHHHhhhcCccCCcceecc--cccCCCCC----CCCCeEEEeEHHH
Confidence 998622 1234567995 9999999999999998752 12357888865 67788764 4568999999999
Q ss_pred hhhhhcccccccccccceeeeccceeeeeeccCCCchhhhhccccCCCCCCChhhHHHHHHHHHH--HHHHHCCcccCCc
Q 002963 589 NIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAY--DILCQCHIKLPEI 666 (862)
Q Consensus 589 d~~~~F~~~y~~~~~k~~f~~~~Rf~~fsPvKN~~~sa~k~~~~~~~~~~dsp~ta~~dl~~~~~--~~L~~aG~~vp~~ 666 (862)
|++.+|+ ++++++++|+ +|+|+||. +++.+++.|+|+.++ +|+. +|.++
T Consensus 358 d~~~~~~--------~~~~~~V~R~-~FsPvKn~----------------~dl~~~~sdly~~~~~~~~~~-~~~~~--- 408 (505)
T 2oeg_A 358 AAIAMFE--------SASAIVVPRS-RFAPVKTC----------------ADLLALRSDAYVVTDDFRLVL-DDRCH--- 408 (505)
T ss_dssp GGGGSCT--------TCEEEECCGG-GCCCCSSH----------------HHHHHHHSTTEEECTTCCEEE-CGGGT---
T ss_pred HHHHhcC--------cceEEEeccc-eeecccCC----------------CCHHHHHHHHHhhcCCceEEE-ccccc---
Confidence 9999985 3568889998 89999992 167788999998887 5665 34432
Q ss_pred ccCCcccccCCCeEEEecCCccccHHHHhhhcCCC--CCCCCcEEEEEEceEEEee--eeeeEEEEeccCCCCccccCCC
Q 002963 667 EGNDKYIDDGPPYLILLHPALGLLWEVTRQKFKGG--SVSKGSELQIEVAEFLWRN--LDGSLIIVAENVMGSTRIADNG 742 (862)
Q Consensus 667 ~~~~~~~~~gP~~~I~L~P~~~~~~~~~~~k~~gg--sIs~~S~L~veG~dv~~~~--ldGslvI~a~~~~g~~~~~~~g 742 (862)
..+|. |.|+|.||++++++++||++| ||+++|+|+|+|+++++++ |+|+|+|.|++. |+
T Consensus 409 -------~~~p~--i~l~p~~~~~~~~~~~r~~~g~psi~~~~~L~v~G~~~f~~~v~l~G~v~i~a~~~-~~------- 471 (505)
T 2oeg_A 409 -------GHPPV--VDLDSAHYKMMNGFEKLVQHGVPSLVECKRVTVKGLVQFGAGNVLTGTVTIENTDS-AS------- 471 (505)
T ss_dssp -------TCCCE--EEECHHHHSSHHHHHHHSTTCCCBCTTEEEEEEESSEECCTTCEEEEEEEEECCSC-SS-------
T ss_pred -------CcCCe--EEEChhHcCcHHHHHHhcCCCCCccccCcEEEEEcceEEccCcEEEEEEEEEecCC-CC-------
Confidence 23674 999999999999999999997 8999999999998888888 999999999831 33
Q ss_pred ccceecccccceEEE-eeeEEeeCceeeec
Q 002963 743 ESILQYGYRCGRCKL-NNVKVLNKGIDWDC 771 (862)
Q Consensus 743 ~~i~~~~~~~g~~~~-~~~~V~N~G~~~~~ 771 (862)
++.| +|+.|+|+||....
T Consensus 472 -----------~~~ip~g~~l~n~~~~~~~ 490 (505)
T 2oeg_A 472 -----------AFVIPDGAKLNDTTASPQQ 490 (505)
T ss_dssp -----------CEECCTTCEEESCEECC--
T ss_pred -----------cEEeCCCCEEeCceechhh
Confidence 5678 88999999998775
No 8
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-70 Score=621.52 Aligned_cols=461 Identities=20% Similarity=0.203 Sum_probs=360.3
Q ss_pred hhhhhhhHHHHHHHHHhhhhccccCCCcccchhhcchhhHHHHHHHHHHHHHHhccccCcChHHHHHHHHHHHHhccccc
Q 002963 161 SEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKFE 240 (862)
Q Consensus 161 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~Ll~qL~~ld~~y~~~ggl~~Y~~~a~~ll~~s~~~ 240 (862)
..+.++||++|.+|++++. .+ +++|++|.+||..++..| .++++..+ +
T Consensus 10 ~~~~~~~~~~l~~~~~~~~---------------~~---~~~~~~~~~~~~~~~~~~-------------~~~~~~~~-~ 57 (488)
T 2i5k_A 10 SVAASQMRNALNKLADSSK---------------LD---DAARAKFENELDSFFTLF-------------RRYLVEKS-S 57 (488)
T ss_dssp -CHHHHHHHHTTCCC--------------------------CCSCTHHHHHHHHHHH-------------HHHHHHHH-S
T ss_pred HHHHHHHHHHHHHHHhhcC---------------CC---HHHHHHHHHHHHHHHHHH-------------HHHHhccc-c
Confidence 3678999999999999976 11 247888999998777644 34443321 0
Q ss_pred cccccccccccccccccccc-cCCCCcccCCChHHHHHHHHHhhhccCcEEEEEecCCccccCCCCCCCCCceeeccccC
Q 002963 241 RKTTKSQHVHESMECQFLEI-HVPSGLDLSQNTEYAAQAALWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLP 319 (862)
Q Consensus 241 ~~~~~~~~~~~~~~~~~d~~-~vP~g~~l~~~~~~~~~~e~~G~e~L~kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p 319 (862)
.+. .+|+.+ ++|++...++.+... + +.|.++++++|||+||||+|||||++.||+ ++||.
T Consensus 58 ~~~-----------~~~~~i~p~~~~~~~~~~~~~~--~-~~~~~~~~k~avViLAGG~GTRmgs~~PK~--l~~V~--- 118 (488)
T 2i5k_A 58 RTT-----------LEWDKIKSPNPDEVVKYEIISQ--Q-PENVSNLSKLAVLKLNGGLGTSMGCVGPKS--VIEVR--- 118 (488)
T ss_dssp CCS-----------CCGGGEECCCTTTEEEHHHHHS--S-CCCSTTGGGEEEEEECCCBSGGGTCCSBST--TSCCB---
T ss_pred cCC-----------CcccccccCChhcccChhhccc--c-hhhhhhcCCceEEEEcCCCcccCCCCCCcc--ccccC---
Confidence 111 245666 666676666543211 1 137888889999999999999999999999 99996
Q ss_pred CCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCC
Q 002963 320 YCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDG 399 (862)
Q Consensus 320 ~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dg 399 (862)
+||||||++++++++++ +.+| +.|||+||||+ +||+.|++||+++++||+ +|.+|.|+++||++ .+|
T Consensus 119 -~gk~~Le~~i~~i~~l~----~~~G--~~Ip~vImts~--~t~e~t~~~~~~~~~fg~---~i~~f~Q~~~P~i~-~d~ 185 (488)
T 2i5k_A 119 -EGNTFLDLSVRQIEYLN----RQYD--SDVPLLLMNSF--NTDKDTEHLIKKYSANRI---RIRSFNQSRFPRVY-KDS 185 (488)
T ss_dssp -TTBCHHHHHHHHHHHHH----HHHT--CCCEEEEECCT--TTHHHHHHHHGGGCSSSC---EEEEECCCCEECEE-TTT
T ss_pred -CCCcHHHHHHHHHHHhH----HhcC--CCccEEEEECC--CCHHHHHHHHHhccccCc---eEEEEEeCccceEc-ccc
Confidence 89999999999999987 4567 78999999999 799999999999999997 79999999999999 689
Q ss_pred cccccCC---CCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCccccc-cHhHHHHhhhhhhcCCceeEEEe
Q 002963 400 QWLVMRP---FAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAAT-DLTLLALAGIGLHHGKKLGFASC 475 (862)
Q Consensus 400 ki~l~~~---~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvDN~La~v-DP~il~flG~~~~~~~~~~~~~v 475 (862)
+++++.+ ++++|+|+||||+|.+|+.+|++++|.++|++|++|+|+|| |++. ||.+ +|++..+++++.+++
T Consensus 186 ~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDn-L~~~~d~~~---L~~~~~~~a~~t~~v- 260 (488)
T 2i5k_A 186 LLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDN-LGATVDLKI---LNHMIETGAEYIMEL- 260 (488)
T ss_dssp CCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTB-SSCCCCHHH---HHHHHHSCCSEEEEE-
T ss_pred ceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCc-CCCcccHHH---HHHHHhcCCcEEEEE-
Confidence 9999755 47999999999999999999999999999999999999999 6665 9955 799999999999997
Q ss_pred eecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCccccCcc-ceeeeEEeHHHHHhhhcccccCC
Q 002963 476 KRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSENERS 554 (862)
Q Consensus 476 vRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~S~F~~-Ninn~~fsL~~l~~vl~~~~~~~ 554 (862)
++++.+++++|++|+ .||+ +++|||+|++++...+ .. +. ..|.. |||||||++++|+++++. ....
T Consensus 261 ~~~~~p~~~yG~Iv~---~dG~----~~iVE~~e~~~e~~~~--~~-~~--~~~~~~Ntgi~~f~~~~L~~~l~~-~~~~ 327 (488)
T 2i5k_A 261 TDKTRADVKGGTLIS---YDGQ----VRLLEVAQVPKEHIDE--FK-NI--RKFTNFNTNNLWINLKAVKRLIES-SNLE 327 (488)
T ss_dssp EECCGGGSSSCEEEE---ETTE----EEEECGGGSCTTSHHH--HT-CT--TTCCEEEEEEEEEEHHHHHHHHHT-TCCC
T ss_pred EEecCCCCceeEEEE---ECCc----EEEEEeccCCHHHHhh--cc-cc--cccCEEEEEEEEEeHHHHHHHHhh-ccCC
Confidence 788889999999997 5898 9999999999986321 11 22 23766 999999999999999986 6788
Q ss_pred ccccccccCCCceeecCCCCccccCcceeccchhhhhhhcccccccccccceeeeccceeeeeeccCCCchhhhhccccC
Q 002963 555 LPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRAD 634 (862)
Q Consensus 555 Lp~hIanpKKkIpy~D~~g~~~~~~~~rLE~~Mqd~~~~F~~~y~~~~~k~~f~~~~Rf~~fsPvKN~~~sa~k~~~~~~ 634 (862)
||+|++. |+||| |.++ .+++||||||||++.+|++ ++..+++|+ +|+|+||+. +
T Consensus 328 lp~~v~~--K~i~~-~~~~----~~~~qlE~~~~d~~~~~~~--------~~~~~V~R~-~F~PvKn~~-~--------- 381 (488)
T 2i5k_A 328 MEIIPNQ--KTITR-DGHE----INVLQLETACGAAIRHFDG--------AHGVVVPRS-RFLPVKTCS-D--------- 381 (488)
T ss_dssp CCCBCCE--ECCCC----------CEECCBCCGGGGGGGSSS--------CEEEEECGG-GCCBCCSHH-H---------
T ss_pred CcceecC--ccccC-CCCC----CceEEeeehhhhHHhhccC--------ceEEEeccc-ccccccCCc-c---------
Confidence 9999977 78999 6543 3789999999999999852 223456888 799999943 1
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHCCcccCCcccCCcccccCCCeEEEecCCccccHHHHhhhcCC-CCCCCCcEEEEEE
Q 002963 635 MSLHQTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYIDDGPPYLILLHPALGLLWEVTRQKFKG-GSVSKGSELQIEV 713 (862)
Q Consensus 635 ~~~~dsp~ta~~dl~~~~~~~L~~aG~~vp~~~~~~~~~~~gP~~~I~L~P~~~~~~~~~~~k~~g-gsIs~~S~L~veG 713 (862)
+ ++.++.+|...+|..+..+. .++.+| +|.|+|. +.++.+|.+||++ ++|.++++|+|+|
T Consensus 382 ------l------l~~~~~~~~~~~g~~~~~~~----~~e~~P--~v~~~~~-~~~~~~~~~rf~~~p~i~~~~~l~v~G 442 (488)
T 2i5k_A 382 ------L------LLVKSDLFRLEHGSLKLDPS----RFGPNP--LIKLGSH-FKKVSGFNARIPHIPKIVELDHLTITG 442 (488)
T ss_dssp ------H------HHHTSTTEEEETTEEEECTT----CCSSCC--EEEECGG-GSSHHHHHHHCSSCCBCTTEEEEEEES
T ss_pred ------H------HHHHHHHHHHhcCcEeecCC----cCCCCC--eEEECCc-ccchhhHHhhcCCCccccccceEEEEe
Confidence 1 22222334444566543221 156678 5999998 7799999999999 7999999999999
Q ss_pred ceEEEee--eeeeEEEEeccCCCCccccCCCccceecccccceEEE-eeeEEeeCcee
Q 002963 714 AEFLWRN--LDGSLIIVAENVMGSTRIADNGESILQYGYRCGRCKL-NNVKVLNKGID 768 (862)
Q Consensus 714 ~dv~~~~--ldGslvI~a~~~~g~~~~~~~g~~i~~~~~~~g~~~~-~~~~V~N~G~~ 768 (862)
+.+++++ |+|+|+|.|++ |. ++.| .|..+.|+|+.
T Consensus 443 dv~fg~~v~l~G~v~i~a~~--~~------------------~~~ip~g~~l~n~~~~ 480 (488)
T 2i5k_A 443 NVFLGKDVTLRGTVIIVCSD--GH------------------KIDIPNGSILENVVVT 480 (488)
T ss_dssp SEEECTTCEEEEEEEEECCT--TC------------------CEEECTTCEEEEEEEE
T ss_pred eeEEcCCcEEEEEEEEEcCC--CC------------------eEEeCCCCEEecceee
Confidence 7556556 99999999983 44 4566 66677888765
No 9
>2icy_A Probable UTP-glucose-1-phosphate uridylyltransferase 2; AT3G03250, UDP, putative UDP-glucose pyrophosphorylase; HET: UPG U5P; 1.64A {Arabidopsis thaliana} SCOP: b.81.1.4 c.68.1.5 PDB: 2icx_A* 1z90_A 2q4j_A
Probab=100.00 E-value=3.4e-67 Score=594.44 Aligned_cols=391 Identities=19% Similarity=0.217 Sum_probs=320.6
Q ss_pred ccccc-cCCCCcccCCChHHH-HHHHHHhhhccCcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHH
Q 002963 256 QFLEI-HVPSGLDLSQNTEYA-AQAALWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDL 333 (862)
Q Consensus 256 ~~d~~-~vP~g~~l~~~~~~~-~~~e~~G~e~L~kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I 333 (862)
+|+.+ ++|++...++.+... ..+++.|+++++++++|+||||+|||||++.||+ |+||. +|+||||+++++|
T Consensus 45 ~~~~i~p~~~~~~~~~~~~~~~~~~~~~g~~~l~k~~vviLAGGlGTRLg~~~PK~--llpv~----~gkp~Le~~i~~l 118 (469)
T 2icy_A 45 EWSKIQTPTDEIVVPYEKMTPVSQDVAETKNLLDKLVVLKLNGGLGTTMGCTGPKS--VIEVR----DGLTFLDLIVIQI 118 (469)
T ss_dssp CGGGCBCCCTTTEEEGGGSCCCCSCHHHHHHHHTTEEEEEEECCBSGGGTCCSBGG--GSEEE----TTEEHHHHHHHHH
T ss_pred cccccccCCcccccChhhcccchhhHHHHHHhhccceEEEEcCCccccCCCCCCcc--ccccC----CCCCHHHHHHHHH
Confidence 45666 677776665544221 2334679999999999999999999999999999 99996 8999999999999
Q ss_pred HHHHHHhhhhcCCcccceEEEecCCCCCchHHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCC---CCcc
Q 002963 334 QAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRP---FAPV 410 (862)
Q Consensus 334 ~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~---~~i~ 410 (862)
++++ +++| +.|||+||||+ .||+.|++||++|++||+ +|++|+|+++||++ .+|+++++.+ +.++
T Consensus 119 ~~~~----~~~G--~~ip~vimts~--~t~e~t~~~f~~~~~fG~---~I~~f~Q~~~P~i~-~e~~~~l~~~~~~~~~e 186 (469)
T 2icy_A 119 ENLN----NKYG--CKVPLVLMNSF--NTHDDTHKIVEKYTNSNV---DIHTFNQSKYPRVV-ADEFVPWPSKGKTDKEG 186 (469)
T ss_dssp HHHH----HHHS--CCCCEEEEECT--TTHHHHHHHHGGGTTSSS---CEEEEECCCEECEE-TTTTEEGGGGTCCSGGG
T ss_pred HHHH----HhcC--CCccEEEEeCC--CCHHHHHHHHHhcccCCc---eEEEEEecceeeEc-cccCccccCCCCCcccc
Confidence 9987 5678 78999999999 799999999999999998 89999999999999 5789999755 7899
Q ss_pred ccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEE
Q 002963 411 CKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIE 490 (862)
Q Consensus 411 ~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvDN~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~ 490 (862)
|+|+||||+|++|+++|++++|.++|++|++|+|+||+.+..||.| +|++..+++++.+++ ++|+.+++++|++|.
T Consensus 187 ~~P~GtGG~~~~L~~sGll~~l~~~G~e~~~V~n~DnL~~~~d~~l---l~~~~~~~a~~t~~v-~~k~~~~~~~Gvl~~ 262 (469)
T 2icy_A 187 WYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTI---LKHLIQNKNEYCMEV-TPKTLADVKGGTLIS 262 (469)
T ss_dssp EECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTBTTCCCCHHH---HHHHHHHTCSEEEEE-EECCTTCCSSCEEEE
T ss_pred CCcCCchHHHHHHHhcCcHHHHHhcCCCEEEEEECCcCCcccCHHH---HHHHHHcCCCeeEEE-EEeccCCCceeEEEE
Confidence 9999999999999999999999999999999999999655569954 899999999999997 778888999999997
Q ss_pred eecCCCccccceEEEEecccCccCCCCCCCCCCCccccCcc-ceeeeEEeHHHHHhhhcccccCCccccccccCCCceee
Q 002963 491 KKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYM 569 (862)
Q Consensus 491 ~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~S~F~~-Ninn~~fsL~~l~~vl~~~~~~~Lp~hIanpKKkIpy~ 569 (862)
.||+ ++++||+|+|++...+ ..+. ..|+. |||||||++++|+++++. ....||.|+ ||| ++
T Consensus 263 ---~dg~----~~vvE~~e~p~~~~~e--~k~~---~~~~~~N~g~y~~~~~~L~~i~~~-~~~~lp~~v-~~K----~i 324 (469)
T 2icy_A 263 ---YEGK----VQLLEIAQVPDEHVNE--FKSI---EKFKIFNTNNLWVNLKAIKKLVEA-DALKMEIIP-NPK----EV 324 (469)
T ss_dssp ---ETTE----EEEECGGGSCGGGHHH--HHSS---SSCCEEEEEEEEEEHHHHHHHHHT-TCCCCCCBC-CEE----EE
T ss_pred ---ECCE----EEEEEEeccChhhhhh--hccc---cccceeeEEEEEEcHHHHHHHHhc-ccCCchhhc-cce----ec
Confidence 6898 8999999999875211 0111 23665 999999999999999986 567899887 666 55
Q ss_pred cCCCCccccCcceeccchhhhhhhcccccccccccceeeeccceeeeeeccCCCchhhhhccccCCCCCCChhhHHHHHH
Q 002963 570 DNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDIL 649 (862)
Q Consensus 570 D~~g~~~~~~~~rLE~~Mqd~~~~F~~~y~~~~~k~~f~~~~Rf~~fsPvKN~~~sa~k~~~~~~~~~~dsp~ta~~dl~ 649 (862)
| | .+++|||+||||++..|.+ +...+++|. .|+||||.. |++
T Consensus 325 d--~----~~~~klE~~~~D~~~~~~~--------~~~~~V~R~-~F~PvKn~~-----------------------dll 366 (469)
T 2icy_A 325 D--G----VKVLQLETAAGAAIRFFDN--------AIGVNVPRS-RFLPVKASS-----------------------DLL 366 (469)
T ss_dssp T--T----EEEECCBCCGGGGGGGSTT--------CEEEECCGG-GCCBCCSHH-----------------------HHH
T ss_pred C--C----CceEeehHhhHHHHHhcCC--------eEEEEechh-HcCcCCCHH-----------------------HHH
Confidence 6 3 4699999999999998752 223467776 699999922 334
Q ss_pred HHHHH-HHHHCCcccCCcccCCcccccCCCeEEEecCCccccHHHHhhhcCC-CCCCCCcEEEEEEceEEEee---eeee
Q 002963 650 RNAYD-ILCQCHIKLPEIEGNDKYIDDGPPYLILLHPALGLLWEVTRQKFKG-GSVSKGSELQIEVAEFLWRN---LDGS 724 (862)
Q Consensus 650 ~~~~~-~L~~aG~~vp~~~~~~~~~~~gP~~~I~L~P~~~~~~~~~~~k~~g-gsIs~~S~L~veG~dv~~~~---ldGs 724 (862)
..+++ |...+|.-+.+. ....+..| +|.|+|. +.++++|.+||++ +||.++++|+|+|+ |+|+. |+|+
T Consensus 367 ~~~s~l~~~~~g~~~~~~---~~~~~~~P--~v~l~~~-~~~v~~f~~rf~~~p~~~~~~~l~v~gd-v~fg~~v~l~G~ 439 (469)
T 2icy_A 367 LVQSDLYTLVDGFVTRNK---ARTNPSNP--SIELGPE-FKKVATFLSRFKSIPSIVELDSLKVSGD-VWFGSSIVLKGK 439 (469)
T ss_dssp HHHSTTEEEETTEEEECT---TCCSSSCC--EEEECGG-GCSHHHHHHTBSSCCBCTTEEEEEEESE-EEECSSCEEEEE
T ss_pred HHHHHHHHHhcCcEEecC---cccCCCCC--eEEcChh-hhhHHHHHHhcCCCcccccCCeEEEEee-eEEcCCcEEEEE
Confidence 44444 444556544221 11245567 6999999 8899999999998 69999999999995 55555 9999
Q ss_pred EEEEecc
Q 002963 725 LIIVAEN 731 (862)
Q Consensus 725 lvI~a~~ 731 (862)
|+|.|.+
T Consensus 440 v~i~~~~ 446 (469)
T 2icy_A 440 VTVAAKS 446 (469)
T ss_dssp EEEECCT
T ss_pred EEEEcCC
Confidence 9999874
No 10
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Probab=98.25 E-value=6.5e-06 Score=93.49 Aligned_cols=192 Identities=15% Similarity=0.149 Sum_probs=129.0
Q ss_pred CcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHH
Q 002963 287 PELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (862)
Q Consensus 287 ~kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T 366 (862)
..+|||+||||.||||...-||- ++|+ .||+++++.++.+..+ | .--++|.|+. -.+..
T Consensus 11 ~~~~vvILAaG~GtRm~~~~pK~--l~pv-----~gkp~i~~~l~~~~~~--------g---~~~i~vv~~~---~~~~i 69 (501)
T 3st8_A 11 GDTAVLVLAAGPGTRMRSDTPKV--LHTL-----AGRSMLSHVLHAIAKL--------A---PQRLIVVLGH---DHQRI 69 (501)
T ss_dssp -CEEEEEEECSCCGGGCCSSCGG--GCEE-----TTEEHHHHHHHHHHHH--------C---CSEEEEEECT---THHHH
T ss_pred CCceEEEECCcCcccCCCCCCHH--HeEE-----CChhHHHHHHHHHHhC--------C---CCEEEEEeCC---CHHHH
Confidence 37899999999999999999999 9887 6899999999887664 3 2346778886 67889
Q ss_pred HHHHHH-hCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEe
Q 002963 367 TSLCER-LRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQ 444 (862)
Q Consensus 367 ~~fle~-n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~V~q 444 (862)
.++|.+ .+.||. +|.+..|. .|-|=|+ |+.++ +.+.+.-...+.|.+
T Consensus 70 ~~~~~~~~~~~~~---~i~~~~q~----------------------~~lGTa~Av~~a~------~~l~~~~~~~~lvl~ 118 (501)
T 3st8_A 70 APLVGELADTLGR---TIDVALQD----------------------RPLGTGHAVLCGL------SALPDDYAGNVVVTS 118 (501)
T ss_dssp HHHHHHHHHHHTS---CCEEEECS----------------------SCCCHHHHHHHHH------TTSCTTCCSEEEEEE
T ss_pred HHHHHHHHHhcCC---cEEEEEcC----------------------CCCCcHHHHHHHH------HHhccccccceeeec
Confidence 999987 345554 56666663 2335443 33332 112223346788888
Q ss_pred CCCccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCC
Q 002963 445 VSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNG 524 (862)
Q Consensus 445 vDN~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~ 524 (862)
.|.+|...|. +..++-++...++++.+.+ .+...| .+-|++.. ..+|+ ...+||.-+.++... .
T Consensus 119 gd~~l~~~~~-~~~l~~~h~~~~~~~ti~~-~~~~dp-~~yG~i~~--~~~g~---v~~ivEk~~~~~~~~----~---- 182 (501)
T 3st8_A 119 GDTPLLDADT-LADLIATHRAVSAAVTVLT-TTLDDP-FGYGRILR--TQDHE---VMAIVEQTDATPSQR----E---- 182 (501)
T ss_dssp TTCTTCCHHH-HHHHHHHHHHTTCSEEEEE-EECSCC-TTSCEEEE--CTTCC---EEEEECGGGCCHHHH----H----
T ss_pred CcceeecHHH-HHHHHHHHhhccccceEee-eccCCc-hhcccccc--cccee---EEeeccccCCChhhc----c----
Confidence 8888877643 3245667667777777765 444444 34566654 36776 256777666655431 0
Q ss_pred ccccCccceeeeEEeHHHHHhhhcc
Q 002963 525 LQADFPANTNILYVDLASAELVGSS 549 (862)
Q Consensus 525 l~S~F~~Ninn~~fsL~~l~~vl~~ 549 (862)
..-.|+..++|+-+.|++++..
T Consensus 183 ---i~~in~Giy~f~~~~l~~~l~~ 204 (501)
T 3st8_A 183 ---IREVNAGVYAFDIAALRSALSR 204 (501)
T ss_dssp ---CCEEEEEEEEEEHHHHHHHHTT
T ss_pred ---ceeeeceeeeecchhHHHhhhh
Confidence 0124999999999999988763
No 11
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=97.75 E-value=0.00017 Score=74.74 Aligned_cols=189 Identities=10% Similarity=0.068 Sum_probs=111.5
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
++.+|+||||.||||+ +|- ++|+ .||+++++.++++... | + -.++|-|. ++.+.
T Consensus 2 ~~~aiIlA~G~stRlp---~K~--L~~i-----~GkPli~~~l~~l~~~--------~--~-~~ivVv~~-----~~~i~ 55 (252)
T 3oam_A 2 SFTVVIPARYQSTRLP---GKP--LADI-----GGKPMIQWVYEQAMQA--------G--A-DRVIIATD-----DERVE 55 (252)
T ss_dssp CEEEEEECCCCCSSST---TGG--GCEE-----TTEEHHHHHHHHHHHT--------T--C-SEEEEEES-----CHHHH
T ss_pred ceEEEEecCcCCCCCC---Ccc--eeeE-----CCEEHHHHHHHHHHhC--------C--C-CeEEEECC-----HHHHH
Confidence 5788999999999996 798 8876 7999999999887653 3 1 24566563 37788
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 002963 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (862)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvDN 447 (862)
+++++ ||. ++.+-.| ..|.|-|+++.++..-+ ..+-+++.+.+.|+
T Consensus 56 ~~~~~---~g~---~v~~~~~----------------------~~~~Gt~~~~~~~~~l~------~~~~d~vlv~~gD~ 101 (252)
T 3oam_A 56 QAVQA---FGG---VVCMTSP----------------------NHQSGTERLAEVVAKMA------IPADHIVVNVQGDE 101 (252)
T ss_dssp HHHHH---TTC---EEEECCT----------------------TCCSHHHHHHHHHHHTT------CCTTSEEEECCTTC
T ss_pred HHHHH---cCC---EEEEcCC----------------------CCCCcHHHHHHHHHhcC------cCCCCEEEEEeCCe
Confidence 88875 443 2211111 13566677776654211 12568999999999
Q ss_pred ccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCc----CceEEEEeecCCCccccceEEEEecc--cCccCCCCCCCC
Q 002963 448 VVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATE----GINVLIEKKNLDGKWAYGLSCIEYTE--FDKFGITRGPFS 521 (862)
Q Consensus 448 ~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E----~vGvL~~~~~~dGk~~~~~~vVEYsE--l~~~~~~~~~~~ 521 (862)
++...+ .+-.++..+...++++.+.+ .+-..+.+ .+|+++. ..+|+ ++.+++ ++.. ++....
T Consensus 102 Pli~~~-~i~~l~~~~~~~~~~~~~~~-~~v~~~~~~~~p~~g~vv~--d~~g~------v~~fsr~~i~~~--~~~~~~ 169 (252)
T 3oam_A 102 PLIPPA-IIRQVADNLAACSAPMATLA-VEIEDEAEVFNPNAVKVIT--DKSGY------ALYFSRATIPWD--RDNFAK 169 (252)
T ss_dssp TTCCHH-HHHHHHHHHHHSSCSEEEEE-EEECCHHHHTCTTSCEEEE--CTTSB------EEEEESSCSSCC--HHHHHS
T ss_pred eecCHH-HHHHHHHHHHhcCCCEEEEe-eecCCHHHhhCCCceEEEE--CCCCe------EEEEeCCCCCCC--CCcccc
Confidence 987652 12233555555566666665 33222221 2355543 25665 444555 3221 000000
Q ss_pred CC-CccccCccceeeeEEeHHHHHhhhc
Q 002963 522 SN-GLQADFPANTNILYVDLASAELVGS 548 (862)
Q Consensus 522 dg-~l~S~F~~Ninn~~fsL~~l~~vl~ 548 (862)
.- ..-..+-.|+..+.|+-++|++...
T Consensus 170 ~~~~~~~~~~~n~GiY~~~~~~l~~~~~ 197 (252)
T 3oam_A 170 ADKAIVQPLLRHIGIYAYRAGFINTYLD 197 (252)
T ss_dssp SSCCCCSCEEEEEEEEEEETTHHHHHHH
T ss_pred ccccccccceEEEEEEEcCHHHHHHHHc
Confidence 00 0001133499999999999998764
No 12
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}
Probab=97.49 E-value=0.003 Score=69.83 Aligned_cols=203 Identities=11% Similarity=0.059 Sum_probs=113.9
Q ss_pred CcEEEEEecCCccccCC---CCCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCc
Q 002963 287 PELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNN 362 (862)
Q Consensus 287 ~kvAvVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~T 362 (862)
.++..|+||||.||||+ ...||- ++|+ .|+ +++++.++++.+. | .-.++|.|.. .
T Consensus 11 ~~~~avILAaG~gtRl~plT~~~pK~--llpi-----~gk~pli~~~l~~l~~~--------g---i~~i~vv~~~---~ 69 (420)
T 3brk_X 11 RDAMAYVLAGGRGSRLKELTDRRAKP--AVYF-----GGKARIIDFALSNALNS--------G---IRRIGVATQY---K 69 (420)
T ss_dssp GGEEEEEEECCCCGGGGGGGSSSCGG--GSEE-----TTTEETHHHHHHHHHHT--------T---CCEEEEEECT---T
T ss_pred hceEEEEEcCCCCCccchhhcCCccc--cccc-----CCCCcHHHHHHHHHHhC--------C---CCeEEEEeCC---C
Confidence 36778999999999999 778998 8887 688 9999999888652 3 1246778876 5
Q ss_pred hHHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccC---CCCcHHHHHHHhcCchHHHHHcCceE
Q 002963 363 HERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKP---GGHGAIWKLAHDKGIFKWFHDNGRKG 439 (862)
Q Consensus 363 he~T~~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P---~GHGdIy~aL~~sGlLd~l~~~Giky 439 (862)
++...+++++. ||+... +.+..++.+.... -...| -|-++ +++. .++.+...+-++
T Consensus 70 ~~~i~~~~~~~--~~~~~~----~~~~~v~i~~~~~----------~~~~~~~~~Gt~~---al~~--a~~~l~~~~~~~ 128 (420)
T 3brk_X 70 AHSLIRHLQRG--WDFFRP----ERNESFDILPASQ----------RVSETQWYEGTAD---AVYQ--NIDIIEPYAPEY 128 (420)
T ss_dssp CHHHHHHHHHH--SCCCCG----GGTCEEEEECCC-----------------CCCCHHH---HHHT--THHHHHHHCCSE
T ss_pred hHHHHHHHhhh--hccccc----cccCCEEEeCccc----------cccCCccccCCHH---HHHH--HHHHHHhcCCCE
Confidence 67888888874 454210 0111122221000 00012 23322 2221 234444445678
Q ss_pred EEEEeCCCccccccHhHHHHhhhhhhcCCceeEEEeeecCC-CCcCceEEEEeecCCCccccceEEEEecccCccCCCCC
Q 002963 440 ATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSG-ATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRG 518 (862)
Q Consensus 440 i~V~qvDN~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~-~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~ 518 (862)
+.|.+.|.+ ...| +-.++..+...++++.+.+ .+.+. ....-|++.. ..+|+ ++++.|-|... . .
T Consensus 129 ~lv~~~D~~-~~~~--l~~l~~~~~~~~~~~tl~~-~~~~~~~~~~~g~v~~--d~~g~------v~~~~ekp~~~-~-~ 194 (420)
T 3brk_X 129 MVILAGDHI-YKMD--YEYMLQQHVDSGADVTIGC-LEVPRMEATGFGVMHV--NEKDE------IIDFIEKPADP-P-G 194 (420)
T ss_dssp EEEEESSCE-ECBC--THHHHHHHHHTTCSEEEEE-EEEETTGGGGSEEEEE--CTTSB------EEEEEESCSSC-C-C
T ss_pred EEEecccEE-EchH--HHHHHHHHHHcCCeEEEEE-eecCccccCcccEEEE--CCCCc------EEEeEeCCCcc-c-c
Confidence 999999994 3333 3344666666677765554 33221 2235677653 23555 33444422211 0 0
Q ss_pred CCCCCCccccCccceeeeEEeHHHHHhhhc
Q 002963 519 PFSSNGLQADFPANTNILYVDLASAELVGS 548 (862)
Q Consensus 519 ~~~dg~l~S~F~~Ninn~~fsL~~l~~vl~ 548 (862)
.. +.. ..+..|+..++|+-+.+.+.++
T Consensus 195 ~~-~~~--~~~~~~~Giy~~~~~~l~~~l~ 221 (420)
T 3brk_X 195 IP-GNE--GFALASMGIYVFHTKFLMEAVR 221 (420)
T ss_dssp BT-TBT--TEEEEEEEEEEEEHHHHHHHHT
T ss_pred cc-ccc--cceEEeeeeEEEeHHHHHHHHH
Confidence 00 000 1134599999999998877664
No 13
>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*
Probab=97.49 E-value=0.0013 Score=68.49 Aligned_cols=178 Identities=21% Similarity=0.167 Sum_probs=107.5
Q ss_pred cEEEEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchH
Q 002963 288 ELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 364 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The 364 (862)
++..|+||||.||||+- ..||. ++|+ .|+++++..++++.+. | .-.++|.|.. ...+
T Consensus 24 ~m~aiIlAaG~g~Rl~~lt~~~pK~--ll~i-----~g~pli~~~l~~l~~~--------g---~~~iivv~~~--~~~~ 83 (269)
T 4ecm_A 24 AMKGIILAGGTGSRLYPITKVTNKH--LLPV-----GRYPMIYHAVYKLKQC--------D---ITDIMIITGK--EHMG 83 (269)
T ss_dssp CEEEEEECCSCCGGGTTTTSSSCGG--GSEE-----TTEEHHHHHHHHHHHT--------T---CCEEEEEECT--TTHH
T ss_pred CcEEEEECCCCccccccccCCCCce--ecEE-----CCEEHHHHHHHHHHHC--------C---CCEEEEECCh--hhHH
Confidence 57889999999999986 78998 8887 6899999999987652 3 2356777776 3457
Q ss_pred HHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEe
Q 002963 365 RITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQ 444 (862)
Q Consensus 365 ~T~~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~q 444 (862)
...+++.....||+ ++.+..|. .+.|-|+...+ .++.+ +-+++.|.+
T Consensus 84 ~~~~~~~~~~~~~~---~i~~~~~~----------------------~~~G~~~al~~-----a~~~~---~~~~~lv~~ 130 (269)
T 4ecm_A 84 DVVSFLGSGQEFGV---SFTYRVQD----------------------KAGGIAQALGL-----CEDFV---GNDRMVVIL 130 (269)
T ss_dssp HHHHHHTTSGGGTC---EEEEEECS----------------------SCCCHHHHHHT-----THHHH---TTSEEEEEE
T ss_pred HHHHHHhhccccCc---eEEEeeCC----------------------ccCcHHHHHHH-----HHHhc---CCCcEEEEe
Confidence 77888876555554 23221110 13343322211 12222 147899999
Q ss_pred CCCccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCC
Q 002963 445 VSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNG 524 (862)
Q Consensus 445 vDN~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~ 524 (862)
.|.+.. . .+-.++..+...++++.+.+ .+.. ....-|++.. .+|+ ++++.|=|.. . .
T Consensus 131 ~D~~~~-~--~l~~l~~~~~~~~~~~~~~~-~~~~-~~~~~g~v~~---d~g~------v~~~~ekp~~-------~--~ 187 (269)
T 4ecm_A 131 GDNIFS-D--DIRPYVEEFTNQKEGAKVLL-QSVD-DPERFGVANI---QNRK------IIEIEEKPKE-------P--K 187 (269)
T ss_dssp TTEEES-S--CSHHHHHHHHTSSSSEEEEE-EECS-CGGGSEEEEE---ETTE------EEEEEESCSS-------C--S
T ss_pred CCccCc-c--CHHHHHHHHHhcCCCeEEEE-EECC-CCCCceEEEE---cCCE------EEEEEECCCC-------C--C
Confidence 999764 3 22244566666677766654 3332 2335677754 3555 3334332211 0 0
Q ss_pred ccccCccceeeeEEeHHHHH
Q 002963 525 LQADFPANTNILYVDLASAE 544 (862)
Q Consensus 525 l~S~F~~Ninn~~fsL~~l~ 544 (862)
.+..|++.++|+-+.++
T Consensus 188 ---~~~~~~Giy~~~~~~l~ 204 (269)
T 4ecm_A 188 ---SSYAVTGIYLYDSKVFS 204 (269)
T ss_dssp ---CSEEEEEEEEECTTHHH
T ss_pred ---CcEEEEEEEEECHHHHH
Confidence 14459999999987764
No 14
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0
Probab=97.48 E-value=0.0033 Score=65.94 Aligned_cols=190 Identities=15% Similarity=0.103 Sum_probs=104.7
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
++.+|+||||.||||| +|- ++|+ .||+++++.++++.+. | + -.++|-|. ++.+.
T Consensus 9 ~~~aIIlA~G~stRl~---~K~--L~~i-----~GkPli~~~l~~l~~~--------~--i-~~VvVvt~-----~~~i~ 62 (256)
T 3tqd_A 9 EFRVIIPARFDSTRLP---GKA--LVDI-----AGKPMIQHVYESAIKS--------G--A-EEVVIATD-----DKRIR 62 (256)
T ss_dssp CCEEEEECCCC---CT---TGG--GCEE-----TTEEHHHHHHHHHHHT--------T--C-SEEEEEES-----CHHHH
T ss_pred CceEEEEcCCCCCCCC---CCC--eeeE-----CCchHHHHHHHHHHhC--------C--C-CEEEEECC-----HHHHH
Confidence 6788999999999998 898 8876 7999999999987652 2 1 13455553 26777
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 002963 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (862)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvDN 447 (862)
+++++ ||. ++. +. . .-.|.|-+.++.++.. +...+.+++.+.+.|+
T Consensus 63 ~~~~~---~g~---~v~---------~~-~------------~~~~~Gt~~i~~a~~~------l~~~~~d~vlv~~gD~ 108 (256)
T 3tqd_A 63 QVAED---FGA---VVC---------MT-S------------SDHQSGTERIAEAAVA------LGFEDDEIIVCLQGDE 108 (256)
T ss_dssp HHHHH---TTC---EEE---------EC-C------------TTCCSHHHHHHHHHHH------TTCCTTCEEEEECTTC
T ss_pred HHHHH---cCC---eEE---------Ee-C------------CCCCCcHHHHHHHHHH------hCcCCCCEEEEEeCCc
Confidence 88775 443 121 11 0 1135566667666532 2113578999999999
Q ss_pred ccccccHhHHHHhhhhhhc-CCceeEEEeeecCCC----Cc-CceEEEEeecCCCccccceEEEEecccCccCCCCCCCC
Q 002963 448 VVAATDLTLLALAGIGLHH-GKKLGFASCKRSSGA----TE-GINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFS 521 (862)
Q Consensus 448 ~La~vDP~il~flG~~~~~-~~~~~~~~vvRK~~~----~E-~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~ 521 (862)
++...+ .+-.++..+... ++++...+ .+-..+ +. -++|++. .+|+ ++.+++=+-....+....
T Consensus 109 Pli~~~-~i~~li~~~~~~~~~~~a~l~-~~v~~~~~~~~p~~vkvv~d---~~g~------~l~fsr~pip~~r~~~~~ 177 (256)
T 3tqd_A 109 PLIPPD-AIRKLAEDLDEHDNVKVASLC-TPITEVDELFNPHSTKVVLN---RRNY------ALYFSHAPIPWGRDTFSD 177 (256)
T ss_dssp CCCCHH-HHHHHHHHHHHCC--CEEEEE-EECCCHHHHTCTTSCEEEEC---TTSB------EEEEESSCSSCCTTTTTC
T ss_pred ccCCHH-HHHHHHHHHHhCCCCCEEEEe-eEcCCHHHhhCCCccEEEEC---CCCE------EeEEecCCCCCCCccccc
Confidence 997642 111234444332 34444444 321111 11 2567664 6776 344555332110110000
Q ss_pred CCC--ccccCccceeeeEEeHHHHHhhhc
Q 002963 522 SNG--LQADFPANTNILYVDLASAELVGS 548 (862)
Q Consensus 522 dg~--l~S~F~~Ninn~~fsL~~l~~vl~ 548 (862)
... .-..|-.|+..+.|+-++|++..+
T Consensus 178 ~~~~~~~~~~~~~~GiY~y~~~~l~~~~~ 206 (256)
T 3tqd_A 178 KENLQLNGSHYRHVGIYAYRVGFLEEYLS 206 (256)
T ss_dssp GGGCCCSSCCEEEEEEEEEEHHHHHHHHH
T ss_pred ccccccCCcceEEEEEEEcCHHHHHHHHh
Confidence 000 001244599999999999998754
No 15
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=97.44 E-value=0.0017 Score=68.38 Aligned_cols=190 Identities=10% Similarity=0.067 Sum_probs=111.1
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
++.+|+||||.||||+ .|- ++|+ .||++++..++++.+. | + -.++|-|.. +.+.
T Consensus 18 ~~~aIIlA~G~stRlp---~K~--L~~i-----~GkPmi~~~l~~l~~~--------~--i-~~IvV~t~~-----~~i~ 71 (264)
T 3k8d_A 18 SFVVIIPARYASTRLP---GKP--LVDI-----NGKPMIVHVLERARES--------G--A-ERIIVATDH-----EDVA 71 (264)
T ss_dssp CCEEEEECCSCCSSST---TGG--GCEE-----TTEEHHHHHHHHHHHT--------T--C-SEEEEEESC-----HHHH
T ss_pred ceEEEEEcCCCCCCCC---Ccc--eeeE-----CCeEHHHHHHHHHHhC--------C--C-CEEEEECCH-----HHHH
Confidence 5788999999999996 587 7776 7999999999887652 2 1 245666632 5677
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 002963 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (862)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvDN 447 (862)
+++++ ||. .+. +. . ...|.|-|.+..++.. +...+.+++.+.+.|+
T Consensus 72 ~~~~~---~g~---~v~---------~~-~------------~~~~~Gt~~i~~~~~~------l~~~~~d~vlv~~gD~ 117 (264)
T 3k8d_A 72 RAVEA---AGG---EVC---------MT-R------------ADHQSGTERLAEVVEK------CAFSDDTVIVNVQGDE 117 (264)
T ss_dssp HHHHH---TTC---EEE---------EC-C------------TTCCSHHHHHHHHHHH------HTCCTTCEEEEECTTC
T ss_pred HHHHH---cCC---EEE---------Ee-c------------CCCCCCHHHHHHHHHH------hccCCCCEEEEEcCCc
Confidence 77765 443 111 11 0 0134566666666532 2223568999999999
Q ss_pred ccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCc-----CceEEEEeecCCCccccceEEEEecccCccCCCCCC-CC
Q 002963 448 VVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATE-----GINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGP-FS 521 (862)
Q Consensus 448 ~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E-----~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~-~~ 521 (862)
++...+ .+-.++..+...++++.+.+ .+-..+++ -++|++. .+|+ ++.+++=+.-...+.. ..
T Consensus 118 Pli~~~-~i~~li~~~~~~~~~~~~~~-~~v~d~~~~~~p~~vkVv~d---~~g~------~l~fsr~~ip~~r~~~~~~ 186 (264)
T 3k8d_A 118 PMIPAT-IIRQVADNLAQRQVGMATLA-VPIHNAEEAFNPNAVKVVLD---AEGY------ALYFSRATIPWDRDRFAEG 186 (264)
T ss_dssp TTCCHH-HHHHHHHHHHTSSCSEEEEE-EECCSHHHHTCTTSCEEEEC---TTSB------EEEEESSCCSCCHHHHHHC
T ss_pred ccCCHH-HHHHHHHHHhhcCCCEEEEE-EEcCCHHHccCCCceEEEEC---CCCe------EEEEecCCCCCCCcccccc
Confidence 997752 12233555555566766665 32222111 2456653 6776 4555654321101000 00
Q ss_pred CCCccccCccceeeeEEeHHHHHhhhc
Q 002963 522 SNGLQADFPANTNILYVDLASAELVGS 548 (862)
Q Consensus 522 dg~l~S~F~~Ninn~~fsL~~l~~vl~ 548 (862)
....-..|..|+....|+-+++++...
T Consensus 187 ~~~~~~~~~~~~GiY~y~~~~l~~~~~ 213 (264)
T 3k8d_A 187 LETVGDNFLRHLGIYGYRAGFIRRYVN 213 (264)
T ss_dssp SSCCCSCCEEECSEEEEEHHHHHHHHH
T ss_pred ccccCCcceEEEEEEEECHHHHHHHHh
Confidence 000111255699999999999998753
No 16
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*
Probab=97.23 E-value=0.0053 Score=68.26 Aligned_cols=210 Identities=12% Similarity=0.112 Sum_probs=107.5
Q ss_pred cEEEEEecCCccccCC---CCCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCch
Q 002963 288 ELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNH 363 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~Th 363 (862)
++..|+||||.||||+ ...||. ++|+ .|+ +++++.++++.+. | .-.++|.|.. .+
T Consensus 20 ~~~avILAaG~gtRl~plT~~~pK~--llpi-----~g~~pli~~~l~~l~~~--------g---~~~i~vv~~~---~~ 78 (451)
T 1yp2_A 20 SVLGIILGGGAGTRLYPLTKKRAKP--AVPL-----GANYRLIDIPVSNCLNS--------N---ISKIYVLTQF---NS 78 (451)
T ss_dssp HEEEEEC------CCTTTTTTSCGG--GCEE-----TTTEETTHHHHHHHHHT--------T---CCEEEEEESC---CC
T ss_pred ceEEEEECCCCCCcccchhcCCcce--eeEE-----CCcceeHHHHHHHHHHC--------C---CCEEEEEecc---CH
Confidence 4778999999999999 678998 8887 588 9999999887652 3 1246788876 56
Q ss_pred HHHHHHHHHhCCCCCCCCce-EEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEE
Q 002963 364 ERITSLCERLRWFGRGQSSF-QLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGAT 441 (862)
Q Consensus 364 e~T~~fle~n~yFGl~~~qV-~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~ 441 (862)
+...++|.+. +|. ++ .++.++.+..+.... .+ .-...+-|-|+ ++.+ ++.+...+-+++.
T Consensus 79 ~~i~~~~~~~--~~~---~~~~~~~~~~v~i~~~~~------~~-~~~~~~~Gt~~al~~a------~~~~~~~~~~~~l 140 (451)
T 1yp2_A 79 ASLNRHLSRA--YAS---NMGGYKNEGFVEVLAAQQ------SP-ENPDWFQGTADAVRQY------LWLFEEHTVLEYL 140 (451)
T ss_dssp HHHHHHHHHH--CC-----------CCEEEEEESCS------ST-TSCCCCCSHHHHHHHT------HHHHTTSCCSEEE
T ss_pred HHHHHHHhhh--hhc---ccccccccCcEEEecccc------cc-cccccccCcHHHHHHH------HHHHHhcCCCeEE
Confidence 7788888753 221 11 011222233332110 00 00011234433 2322 2333333568999
Q ss_pred EEeCCCccccccHhHHHHhhhhhhcCCceeEEEeeecC-CCCcCceEEEEeecCCCccccceEEEEecccCccCCCC-CC
Q 002963 442 VRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITR-GP 519 (862)
Q Consensus 442 V~qvDN~La~vDP~il~flG~~~~~~~~~~~~~vvRK~-~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~-~~ 519 (862)
|.+.|.+ ...| +-.++..+...++++.+.+ .+.. .....-|++.. ..+|+ ++++.|=|....+. -+
T Consensus 141 v~~~D~~-~~~~--l~~l~~~~~~~~~~~tl~~-~~~~~~~~~~~g~v~~--d~~~~------v~~~~ekp~~~~~~~~~ 208 (451)
T 1yp2_A 141 ILAGDHL-YRMD--YEKFIQAHRETDADITVAA-LPMDEKRATAFGLMKI--DEEGR------IIEFAEKPQGEQLQAMK 208 (451)
T ss_dssp EECSCEE-CCCC--HHHHHHHHHHTTCSEEEEE-EEECHHHHTTSEEEEE--CTTSB------EEEEEESCCHHHHHHTC
T ss_pred EecCcEE-EcCC--HHHHHHHHHHcCCcEEEEE-EEcChhhcccCCEEEE--CCCCC------EEEEEECCCchhhcccc
Confidence 9999993 3333 3345666666677765544 2221 11234667653 23454 44454433321000 00
Q ss_pred CCCCCcc---------ccCccceeeeEEeHHHHHhhhcc
Q 002963 520 FSSNGLQ---------ADFPANTNILYVDLASAELVGSS 549 (862)
Q Consensus 520 ~~dg~l~---------S~F~~Ninn~~fsL~~l~~vl~~ 549 (862)
.+ -+++ ..+..|+..++|+-+.+.+.++.
T Consensus 209 ~~-~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~ 246 (451)
T 1yp2_A 209 VD-TTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRD 246 (451)
T ss_dssp CC-GGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHT
T ss_pred cc-ccccccccccccCCcceEEeeEEEEcHHHHHHHHHh
Confidence 00 0000 11335999999999988777653
No 17
>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}
Probab=97.23 E-value=0.0029 Score=67.35 Aligned_cols=192 Identities=10% Similarity=-0.023 Sum_probs=98.2
Q ss_pred cEEEEEecCCccccCC---C-CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCch
Q 002963 288 ELGEIYPLGGSADRLG---L-VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNH 363 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG---~-~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~Th 363 (862)
++..|+||||.||||+ . ..||- ++|+. .|+++++..++++... .-.++|.|.. ...
T Consensus 4 ~~~avIlAgG~gtRl~plt~~~~pK~--ll~i~----gg~pli~~~l~~l~~~------------~~~i~vv~~~--~~~ 63 (308)
T 2qh5_A 4 KIKNILLSGGSGKRLWPLSRSLYPKQ--FLKLF----DHKSLFELSFKRNASL------------VDETLIVCNE--KHY 63 (308)
T ss_dssp CEEEEEECC-------------CCGG--GCTTB----TTBCHHHHHHHHHHTT------------CSEEEEEEEG--GGH
T ss_pred ccEEEEEcCCCCccCCccCCCCCCCE--EEECC----CCCCHHHHHHHHHHcc------------CCCEEEEECh--hHH
Confidence 4677889999999996 2 57998 88774 6899999998877542 1256778876 334
Q ss_pred HHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHH-HHHHHhcCchHHHHHcCceEEEE
Q 002963 364 ERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAI-WKLAHDKGIFKWFHDNGRKGATV 442 (862)
Q Consensus 364 e~T~~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdI-y~aL~~sGlLd~l~~~Gikyi~V 442 (862)
+.+.+++++. ||++ ++.+..|+ .|.|-|+. +.++.. + ..-.++.|
T Consensus 64 ~~i~~~~~~~--~~~~--~~~~i~~~----------------------~~~gt~~al~~a~~~---l-----~~~~~~lv 109 (308)
T 2qh5_A 64 FLALEEIKNE--IKNK--SVGFLLES----------------------LSKNTANAIALSALM---S-----DKEDLLIV 109 (308)
T ss_dssp HHHHHHTTTT--CSSC--EEEEEEES----------------------SCCCHHHHHHHHHHT---S-----CTTSEEEE
T ss_pred HHHHHHHHHh--hCCC--ccEEEeCC----------------------CCCChHHHHHHHHHH---h-----CCCCeEEE
Confidence 5677777653 4532 22222221 13344443 333321 1 12347899
Q ss_pred EeCCCccccccHhHHHHhhh---hhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCC
Q 002963 443 RQVSNVVAATDLTLLALAGI---GLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGP 519 (862)
Q Consensus 443 ~qvDN~La~vDP~il~flG~---~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~ 519 (862)
.+.|.++...| .|-.++.. ....++.+.+.+ . ...+..+-|++.. ..+|+ ++++.|=|....++..
T Consensus 110 ~~~D~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~-~-~~~~~~~~g~i~~--d~~~~------V~~~~Ekp~~~~~~~~ 178 (308)
T 2qh5_A 110 TPSDHLIKDLQ-AYENAIKKAIDLAQKGFLVTFGV-S-IDKPNTEFGYIES--PNGLD------VKRFIEKPSLDKAIEF 178 (308)
T ss_dssp EESSCBCCCHH-HHHHHHHHHHHHHHTTCEEEEEE-E-CSSCCTTSEEEEC--SSSSB------CSEEEESCCHHHHHHH
T ss_pred EcCCccccCHH-HHHHHHHHHHHHHhcCCEEEEEE-e-cCCCCCCceEEEE--CCCCE------EEEEEECCChHHHHHH
Confidence 99999875443 13233443 334454444443 2 3334456777753 12344 2233332221100000
Q ss_pred CCCCCccccCccceeeeEEeHHHHHhhhc
Q 002963 520 FSSNGLQADFPANTNILYVDLASAELVGS 548 (862)
Q Consensus 520 ~~dg~l~S~F~~Ninn~~fsL~~l~~vl~ 548 (862)
..+| .|..|+..++|+-+.+.+.++
T Consensus 179 ~~~g----~~~~n~Giy~~~~~~ll~~l~ 203 (308)
T 2qh5_A 179 QKSG----GFYFNSGMFVFQAGVFLDELK 203 (308)
T ss_dssp HHHC----CEEEEEEEEEEEHHHHHHHHH
T ss_pred hhcC----CeEEEeEEEEEEHHHHHHHHH
Confidence 0011 144699999999888755554
No 18
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...
Probab=97.20 E-value=0.0061 Score=64.76 Aligned_cols=181 Identities=18% Similarity=0.209 Sum_probs=102.6
Q ss_pred EEEEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHH
Q 002963 289 LGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHER 365 (862)
Q Consensus 289 vAvVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~ 365 (862)
+..|+||||.||||| ...||- ++|+ .||+++++.++.+.. .| + -.++|.|+. ...+.
T Consensus 3 ~~aIILAgG~gtRl~plT~~~pK~--llpi-----~gkpli~~~l~~l~~--------~g--i-~~I~vv~~~--~~~~~ 62 (293)
T 1fxo_A 3 RKGIILAGGSGTRLHPATLAISKQ--LLPV-----YDKPMIYYPLSTLML--------AG--I-REILIISTP--QDTPR 62 (293)
T ss_dssp EEEEEECCCCCTTTTTHHHHSCGG--GSEE-----TTEETTHHHHHHHHH--------TT--C-CEEEEEECT--TTHHH
T ss_pred ceEEEECCCCCCcCccccCCCCce--eCeE-----CCEeHHHHHHHHHHH--------CC--C-CEEEEEecc--ccHHH
Confidence 567888999999998 467898 8877 689999999887754 23 1 235566655 35677
Q ss_pred HHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeC
Q 002963 366 ITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQV 445 (862)
Q Consensus 366 T~~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qv 445 (862)
..+++.+...||+ ++.+..|+ .|.|-++.+.... +.+ +-+.+.+...
T Consensus 63 i~~~l~~g~~~g~---~i~~~~~~----------------------~~~G~~~al~~a~-----~~i---~~~~~~lv~g 109 (293)
T 1fxo_A 63 FQQLLGDGSNWGL---DLQYAVQP----------------------SPDGLAQAFLIGE-----SFI---GNDLSALVLG 109 (293)
T ss_dssp HHHHHTTSGGGTC---EEEEEECS----------------------SCCCGGGHHHHTH-----HHH---TTSEEEEEET
T ss_pred HHHHHhcccccCc---eEEEeeCC----------------------CCCCHHHHHHHHH-----HHh---CCCCEEEEEC
Confidence 7788776444554 23222111 2556554333211 122 1245555668
Q ss_pred CCccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCc
Q 002963 446 SNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGL 525 (862)
Q Consensus 446 DN~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l 525 (862)
||++... .+-.++-.+...+.+..+-+ .+... .++-|++.. ..+|+ + +.+.|-|.. + .
T Consensus 110 D~~~~~~--~l~~~l~~~~~~~~~~~v~~-~~v~d-p~~~g~v~~--d~~g~----v--~~~~ekp~~-------~--~- 167 (293)
T 1fxo_A 110 DNLYYGH--DFHELLGSASQRQTGASVFA-YHVLD-PERYGVVEF--DQGGK----A--ISLEEKPLE-------P--K- 167 (293)
T ss_dssp TEEEECT--THHHHHHHHHTCCSSEEEEE-EECSC-GGGSEEEEE--CTTSC----E--EEEEESCSS-------C--S-
T ss_pred ChhccCc--cHHHHHHHHHhcCCCcEEEE-EECCC-cccCcEEEE--CCCCc----E--EEEEECCCC-------C--C-
Confidence 9998653 23334555444454544433 33332 346777753 24565 3 233332211 0 0
Q ss_pred cccCccceeeeEEeHHHHHhh
Q 002963 526 QADFPANTNILYVDLASAELV 546 (862)
Q Consensus 526 ~S~F~~Ninn~~fsL~~l~~v 546 (862)
+ +..|+...+|+-+.++.+
T Consensus 168 -s-~~~~~Giy~~~~~~l~~~ 186 (293)
T 1fxo_A 168 -S-NYAVTGLYFYDQQVVDIA 186 (293)
T ss_dssp -S-SEEEEEEEEECTTHHHHH
T ss_pred -C-CeEEEEEEEEcHHHHHHH
Confidence 1 335899999998876543
No 19
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*
Probab=97.18 E-value=0.004 Score=68.92 Aligned_cols=181 Identities=15% Similarity=0.130 Sum_probs=104.7
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
++..|+||||.|||||-+.||. ++|+ .|+++++..++++.+. | .-.++|.|.. .++...
T Consensus 8 ~~~aiIlA~G~g~Rl~~~~pK~--l~~i-----~g~pli~~~l~~l~~~--------~---~~~i~vv~~~---~~~~i~ 66 (459)
T 4fce_A 8 SMSVVILAAGKGTRMYSDLPKV--LHPL-----AGKPMVQHVIDAAMKL--------G---AQHVHLVYGH---GGELLK 66 (459)
T ss_dssp CEEEEEEECCCCGGGCCSSCGG--GSEE-----TTEEHHHHHHHHHHHH--------T---CSCEEEEESS---CHHHHH
T ss_pred cceEEEECCCCCccCCCCCCcc--cCee-----CCeeHHHHHHHHHHhC--------C---CCcEEEEeCC---CHHHHH
Confidence 6889999999999999888998 8877 6899999999987664 2 2257788886 467777
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCC-cHHHHHHHhcCchHHHHHcCceEEEEEeCC
Q 002963 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGH-GAIWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (862)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GH-GdIy~aL~~sGlLd~l~~~Gikyi~V~qvD 446 (862)
+++++. .+.+..|. .+.|- +.++.+|.. + .+-+++.+.+.|
T Consensus 67 ~~~~~~--------~~~~v~~~----------------------~~~g~~~~i~~~~~~---~-----~~~~~~lv~~~D 108 (459)
T 4fce_A 67 KTLADP--------SLNWVLQA----------------------EQLGTGHAMQQAAPH---F-----ADDEDILMLYGD 108 (459)
T ss_dssp HHC-------------CEEECS----------------------SCCCHHHHHHHHGGG---S-----CTTSEEEEEETT
T ss_pred HHhccC--------CcEEEeCC----------------------CCCCcHHHHHHHHHh---c-----CCCCcEEEEeCC
Confidence 776642 12111110 12232 234444432 1 135799999999
Q ss_pred CccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcc
Q 002963 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (862)
Q Consensus 447 N~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (862)
.++...+ .+-.++-.. ...+..+.+ .+... ..+-|++.. .+|+ +.++.|-++.. . . ..
T Consensus 109 ~P~i~~~-~i~~l~~~~--~~~~~~~~~-~~~~~-~~~~g~v~~---~~g~------v~~~~ek~~~~-~----~--~~- 166 (459)
T 4fce_A 109 VPLISVD-TLQRLLAAK--PEGGIGLLT-VKLDN-PSGYGRIVR---ENGD------VVGIVEHKDAS-D----A--QR- 166 (459)
T ss_dssp CTTCCHH-HHHHHHHHC--CTTSEEEEE-EECSC-CTTSCEEEE---ETTE------EEEEECGGGCC-T----T--GG-
T ss_pred cccCCHH-HHHHHHHHH--hhCCEEEEE-EecCC-CCcccEEEe---CCCc------EEEEEECCCCC-h----H--Hh-
Confidence 9887642 121223332 223444433 33222 234566654 3565 33333322221 0 0 00
Q ss_pred ccCccceeeeEEeHHHHHhhhcc
Q 002963 527 ADFPANTNILYVDLASAELVGSS 549 (862)
Q Consensus 527 S~F~~Ninn~~fsL~~l~~vl~~ 549 (862)
..+..|+..++|+-+.+.+.++.
T Consensus 167 ~~~~~~~Giy~~~~~~l~~~l~~ 189 (459)
T 4fce_A 167 EINEINTGILVANGRDLKRWLSL 189 (459)
T ss_dssp GCCEEEEEEEEEEHHHHHHHHHT
T ss_pred hccEEEEEEEEEEHHHHHHHHHH
Confidence 01334999999999998887653
No 20
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*
Probab=97.15 E-value=0.0036 Score=65.24 Aligned_cols=64 Identities=17% Similarity=0.277 Sum_probs=50.1
Q ss_pred EEEEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHH
Q 002963 289 LGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHER 365 (862)
Q Consensus 289 vAvVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~ 365 (862)
+.+|+||||.||||+- ..||- ++|+ .|+++++..++++... | .-.++|.|+. ..+.
T Consensus 3 ~~avIlAaG~gtRl~plt~~~pK~--ll~i-----~gkpli~~~l~~l~~~--------g---i~~i~vv~~~---~~~~ 61 (281)
T 3juk_A 3 KKCLFPAAGYGTRFLPITKTIPKE--MLPI-----VDKPLIQYAVEEAMEA--------G---CEVMAIVTGR---NKRS 61 (281)
T ss_dssp CEEEEECCSCCGGGTTGGGTSCGG--GCBS-----SSSBHHHHHHHHHHHH--------T---CCEEEEEECT---THHH
T ss_pred eEEEEECCcCCcccCccccCCCcc--cceE-----CCEEHHHHHHHHHHhC--------C---CCEEEEEecC---CHHH
Confidence 3578899999999987 88998 8876 6899999999988663 3 2356777876 6678
Q ss_pred HHHHHHHh
Q 002963 366 ITSLCERL 373 (862)
Q Consensus 366 T~~fle~n 373 (862)
+.++|.+.
T Consensus 62 i~~~~~~~ 69 (281)
T 3juk_A 62 LEDYFDTS 69 (281)
T ss_dssp HHHHTSCC
T ss_pred HHHHHhcc
Confidence 88887653
No 21
>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}
Probab=97.12 E-value=0.016 Score=61.56 Aligned_cols=212 Identities=13% Similarity=0.045 Sum_probs=112.7
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
++..|+||||.|||||- ||- ++|++ | .|+++++..++++... | .-.++|.|.. ...+...
T Consensus 5 ~~~~vIlAaG~g~R~~~--~K~--l~~ig--~-~g~pli~~~l~~~~~~--------~---~~~i~vv~~~--~~~~~~~ 64 (303)
T 3pnn_A 5 KPTLFVLAAGMGSRYGS--LKQ--LDGIG--P-GGDTIMDYSVYDAIRA--------G---FGRLVFVIRH--SFEKEFR 64 (303)
T ss_dssp CCEEEEECTTCBCTTSS--BCC--CCCCS--T-TSCCHHHHHHHHHHHH--------T---CCEEEEEECG--GGHHHHH
T ss_pred ceEEEEECCCCcccCCC--Cce--EeEcC--C-CCeeHHHHHHHHHHHC--------C---CCeEEEEcCc--hHHHHHH
Confidence 45778999999999995 798 88874 1 5899999999987653 3 2356778876 3357888
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 002963 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (862)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvDN 447 (862)
++|.....+++ +|.+..|+..- +. ....+.... ..|-|-| +..+.....++ +.+.|.+-|+
T Consensus 65 ~~~~~~~~~~~---~i~~~~~~~~~-~~-~~~~~~~~~-----~~~~Gt~--~al~~a~~~i~-------~~~lV~~gD~ 125 (303)
T 3pnn_A 65 EKILTKYEGRI---PVELVFQELDR-LP-EGFSCPEGR-----EKPWGTN--HAVLMGRDAIR-------EPFAVINADD 125 (303)
T ss_dssp HHTHHHHTTTS---CEEEEECCTTC-CC-TTCCCCTTC-----CSCCCHH--HHHHTTTTTCC-------SCEEEEESSC
T ss_pred HHHHHHhccCC---cEEEEeccccc-cc-ccccccccc-----cccCCcH--HHHHHHHHhcC-------CCEEEEECCe
Confidence 88886544443 56666676321 11 111111111 1344544 33333333331 3456667777
Q ss_pred ccccccHhHHHHhhhhhh---cCCceeEEEeeecCCC-Cc-C---ceEEEEeecCCCccccceEEEEecccCccCC-CCC
Q 002963 448 VVAATDLTLLALAGIGLH---HGKKLGFASCKRSSGA-TE-G---INVLIEKKNLDGKWAYGLSCIEYTEFDKFGI-TRG 518 (862)
Q Consensus 448 ~La~vDP~il~flG~~~~---~~~~~~~~~vvRK~~~-~E-~---vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~-~~~ 518 (862)
+ ...| .+-.++-+... .++++.+.+ .+-..+ .. + -|++.. ..+|+ ...++|-.+.+.... ...
T Consensus 126 l-~~~~-~~~~l~~~~~~~~~~~~~~~v~~-~~~~~~~~~~g~~~~G~v~~--d~~g~---v~~i~Ekp~~~~~~~~~~~ 197 (303)
T 3pnn_A 126 F-YGRN-GFEVLARKLMTLEGKQGEYCMVG-YRVGNTLSESGGVSRGVCQV--DEKHL---LTGVVERTGIERTDGTISF 197 (303)
T ss_dssp B-CCHH-HHHHHHHHHHTTTTCSSEEEEEE-EEGGGSCBTTBCEEEEEEEE--CTTSB---EEEEEEEEEEEEETTEEEE
T ss_pred e-cCHH-HHHHHHHHHHHhccccCceEEEE-EECCCccCccCceeeeeEee--CCCCc---EEEEEECCCCccccccccc
Confidence 4 3333 23334555543 345565554 333333 22 1 256643 24666 245666554432100 000
Q ss_pred CCCCCCcc---ccCccceeeeEEeHHHHHhh
Q 002963 519 PFSSNGLQ---ADFPANTNILYVDLASAELV 546 (862)
Q Consensus 519 ~~~dg~l~---S~F~~Ninn~~fsL~~l~~v 546 (862)
...+|... .....|++.++|+-+.++.+
T Consensus 198 ~~~~g~~~~~~~~~~i~~GiY~f~~~~~~~l 228 (303)
T 3pnn_A 198 RDETGKICTLAEDAPVSMNMWGFTPDYFDYS 228 (303)
T ss_dssp ECTTSCEEEECTTCEEEEEEEEECTHHHHHH
T ss_pred cccccccccCCCCCEEEEEEEEECHHHHHHH
Confidence 00112100 01234999999998876544
No 22
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6
Probab=97.07 E-value=0.014 Score=62.21 Aligned_cols=180 Identities=16% Similarity=0.126 Sum_probs=100.2
Q ss_pred EEEEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHH
Q 002963 289 LGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHER 365 (862)
Q Consensus 289 vAvVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~ 365 (862)
+..|+||||.||||+ ...||- ++|+ .||+++++.++.+.. .| + -.++|.|+. ...+.
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~--llpi-----~gkpli~~~l~~l~~--------~g--i-~~Iivv~~~--~~~~~ 63 (295)
T 1lvw_A 4 MKGIVLAGGSGTRLYPITRAVSKQ--LLPI-----YDKPMIYYPLSVLML--------AG--I-RDILIISTP--RDLPL 63 (295)
T ss_dssp CEEEEECCCCCSTTTTTTTSSCGG--GSEE-----TTEETTHHHHHHHHH--------TT--C-CEEEEEECT--TTHHH
T ss_pred eEEEEECCCCCCccccccCCCCce--ecEE-----CCeeHHHHHHHHHHH--------CC--C-CeEEEEecc--chHHH
Confidence 457889999999999 567998 8877 689999999887764 23 1 245666665 35666
Q ss_pred HHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHH-HHHHhcCchHHHHHcCceEEEEEe
Q 002963 366 ITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIW-KLAHDKGIFKWFHDNGRKGATVRQ 444 (862)
Q Consensus 366 T~~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy-~aL~~sGlLd~l~~~Gikyi~V~q 444 (862)
..+++.+...+|+ ++.+..|+ .|.|-++.+ .++ +.+ . +-.++.+.
T Consensus 64 i~~~l~~g~~~g~---~i~~~~~~----------------------~~~G~~~al~~a~------~~i-~-~~~~~lv~- 109 (295)
T 1lvw_A 64 YRDLLGDGSQFGV---RFSYRVQE----------------------EPRGIADAFIVGK------DFI-G-DSKVALVL- 109 (295)
T ss_dssp HHHHHTTSGGGTS---EEEEEECS----------------------SCCCGGGHHHHTH------HHH-T-TSCEEEEE-
T ss_pred HHHHhhhccccCc---eEEEeeCC----------------------CCCChHHHHHHHH------HHh-C-CCcEEEEE-
Confidence 7777776444554 23222221 245555433 222 122 1 22345554
Q ss_pred CCCccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCC
Q 002963 445 VSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNG 524 (862)
Q Consensus 445 vDN~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~ 524 (862)
.||++... .+-.++-.+...+.+..+- +.+...+ ++-|++.. ..+|+ + +.+.|-|.. . .
T Consensus 110 gD~~~~~~--~l~~~l~~~~~~~~~~~v~-~~~v~dp-~~~g~v~~--d~~g~----v--~~~~ekp~~--------~-~ 168 (295)
T 1lvw_A 110 GDNVFYGH--RFSEILRRAASLEDGAVIF-GYYVRDP-RPFGVVEF--DSEGR----V--ISIEEKPSR--------P-K 168 (295)
T ss_dssp TTCCEECT--THHHHHHHHHTCCSSEEEE-EEECSCC-TTSEEEEE--CTTSB----E--EEEEESCSS--------C-S
T ss_pred CCccccCc--CHHHHHHHHHHcCCCcEEE-EEECCCc-ccCCEEEE--CCCCc----E--EEEEECCCC--------C-C
Confidence 89998653 3333455544444444432 2333333 35677653 24555 2 333332211 0 0
Q ss_pred ccccCccceeeeEEeHHHHHhh
Q 002963 525 LQADFPANTNILYVDLASAELV 546 (862)
Q Consensus 525 l~S~F~~Ninn~~fsL~~l~~v 546 (862)
+ ...|+...+|+-+.++.+
T Consensus 169 --s-~~~~~Giy~f~~~~l~~~ 187 (295)
T 1lvw_A 169 --S-NYVVPGLYFYDNQVVEIA 187 (295)
T ss_dssp --C-SEECCSEEEECTTHHHHH
T ss_pred --C-CEEEEEeEEEcHHHHHHH
Confidence 1 235888899998876543
No 23
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=97.05 E-value=0.0021 Score=64.63 Aligned_cols=127 Identities=11% Similarity=0.053 Sum_probs=74.4
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
++.+|+||||.||||| ||. ++|+ .|+++++..++++.+. + ..-.++|-|.. +...
T Consensus 4 ~~~aiIlA~G~g~R~~---~K~--l~~i-----~gkpll~~~l~~~~~~--------~--~~~~ivvv~~~-----~~i~ 58 (228)
T 1ezi_A 4 QNIAVILARQNSKGLP---LKN--LRKM-----NGISLLGHTINAAISS--------K--CFDRIIVSTDG-----GLIA 58 (228)
T ss_dssp EEEEEEECCSSCSSST---TTT--TCEE-----TTEEHHHHHHHHHHHH--------C--CCSEEEEEESC-----HHHH
T ss_pred ceEEEEecCCCCCCCC---Ccc--ccee-----CCcCHHHHHHHHHHhC--------C--CCCEEEEECCC-----HHHH
Confidence 5778999999999999 898 8876 6999999999888663 2 11256666643 4456
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCc---HHHHHHHhcCchHHHHHcCceEEEEEe
Q 002963 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHG---AIWKLAHDKGIFKWFHDNGRKGATVRQ 444 (862)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHG---dIy~aL~~sGlLd~l~~~Gikyi~V~q 444 (862)
+++++ +|. .+ +.+. .. ...+|-| .++.+|. .+ ..+.+++.+.+
T Consensus 59 ~~~~~---~~~---~~--~~~~-----------------~~--~~~~~~g~~~sv~~~l~------~~-~~~~d~vlv~~ 104 (228)
T 1ezi_A 59 EEAKN---FGV---EV--VLRP-----------------AE--LASDTASSISGVIHALE------TI-GSNSGTVTLLQ 104 (228)
T ss_dssp HHHHH---TTC---EE--EECC-----------------C--------CHHHHHHHHHHH------HH-TCCSEEEEECC
T ss_pred HHHHH---cCC---EE--EeCc-----------------hH--HcCCCCChHHHHHHHHH------Hh-CCCCCEEEEEc
Confidence 67765 232 11 2111 00 1112222 2444443 22 23568999999
Q ss_pred CCCccccccHhHHHHhhhhhhcCCceeEEE
Q 002963 445 VSNVVAATDLTLLALAGIGLHHGKKLGFAS 474 (862)
Q Consensus 445 vDN~La~vDP~il~flG~~~~~~~~~~~~~ 474 (862)
.|+++...+ .+-.++..+...++++.+.+
T Consensus 105 ~D~P~~~~~-~i~~l~~~~~~~~~~~~~~~ 133 (228)
T 1ezi_A 105 PTSPLRTGA-HIREAFSLFDEKIKGSVVSA 133 (228)
T ss_dssp TTCTTCCHH-HHHHHHTTCCTTTCCCEEEE
T ss_pred CCCCcCCHH-HHHHHHHHHHhcCCCEEEEE
Confidence 999987752 12123444434455555554
No 24
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A
Probab=97.00 E-value=0.01 Score=62.11 Aligned_cols=187 Identities=12% Similarity=0.097 Sum_probs=102.4
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHH-HHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLI-RDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 289 vAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~-e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
..+|+||||.||||+ +|- ++|+ .||+++++.+ +++++ .| + -.++|-|.+ +.+.
T Consensus 2 ~~aiIlA~G~stR~~---~K~--L~~i-----~GkPli~~~i~~~~~~--------~~--~-~~vvVvt~~-----~~i~ 55 (253)
T 4fcu_A 2 KHIVIPARFSSSRLP---GKP--LLLI-----HDRPMILRVVDQAKKV--------EG--F-DDLCVATDD-----ERIA 55 (253)
T ss_dssp EEEEEECCSCCTTST---TGG--GSEE-----TTEEHHHHHHHHHHTC--------TT--C-CEEEEEESC-----HHHH
T ss_pred eEEEEEeCCCCCCCC---CCc--eeeE-----CCeEhHHHHHHHHHHh--------cC--C-CEEEEECCH-----HHHH
Confidence 467899999999998 487 7766 7999999998 76643 12 1 234555542 6677
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 002963 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (862)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvDN 447 (862)
+++++ ||. ++ +.... -.+.|-+.++.++. .+...+..++.+.+-|+
T Consensus 56 ~~~~~---~g~---~v----------~~~~~------------~~~~Gt~~i~~a~~------~~~~~~~d~vlv~~gD~ 101 (253)
T 4fcu_A 56 EICRA---EGV---DV----------VLTSA------------DHPSGTDRLSEVAR------IKGWDADDIIVNVQGDE 101 (253)
T ss_dssp HHHHT---TTC---CE----------EECCT------------TCCCHHHHHHHHHH------HHTCCTTCEEEECCTTC
T ss_pred HHHHH---cCC---eE----------EEeCC------------CCCChHHHHHHHHH------hcCcCCCCEEEEEeCCc
Confidence 77764 343 11 11000 01334444555543 23223568999999999
Q ss_pred ccccccHhHHHHhhhhhhc-CCceeEEEee-----ecCCCCcCceEEEEeecCCCccccceEEEEecc--cCccCCCCCC
Q 002963 448 VVAATDLTLLALAGIGLHH-GKKLGFASCK-----RSSGATEGINVLIEKKNLDGKWAYGLSCIEYTE--FDKFGITRGP 519 (862)
Q Consensus 448 ~La~vDP~il~flG~~~~~-~~~~~~~~vv-----RK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsE--l~~~~~~~~~ 519 (862)
++...+ .|-.++..+... +..+...++. +-.+|.. ++|++. .+|+ .. -+++ +|..- +..
T Consensus 102 Pli~~~-~i~~li~~~~~~~~~~~at~~~~~~~~~~~~~p~~-~kvv~d---~~g~----~l--~fsr~~ip~~r--~~~ 168 (253)
T 4fcu_A 102 PLLPAQ-LVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSI-VKVVMS---KQNE----AL--YFSRATIPYDR--DGA 168 (253)
T ss_dssp TTCCHH-HHHHHHHHHHHCTTCSEEEEEEECCCHHHHHCTTS-CEEEEC---TTSB----EE--EEESSCCSCCT--TTS
T ss_pred ccCCHH-HHHHHHHHHHhCCCCCEEEEeEEcCCHHHccCCCc-cEEEEC---CCCe----EE--EecCCCCCCCC--Ccc
Confidence 998752 121234444443 2334333322 1122332 566654 6776 32 3344 33221 110
Q ss_pred CCCC-CccccCccceeeeEEeHHHHHhhhc
Q 002963 520 FSSN-GLQADFPANTNILYVDLASAELVGS 548 (862)
Q Consensus 520 ~~dg-~l~S~F~~Ninn~~fsL~~l~~vl~ 548 (862)
..+. ..-..|-.|+..+.|+-++|++...
T Consensus 169 ~~~~~~~~~~~~~~~GiY~f~~~~l~~~~~ 198 (253)
T 4fcu_A 169 KRDEPTLHTQAFRHLGLYAYRVSLLQEYVT 198 (253)
T ss_dssp SSSSCCCCSCCEEEEEEEEEEHHHHHHHTT
T ss_pred cccccccccceeEEEEEEEeCHHHHHHHHh
Confidence 0000 0001244599999999999998763
No 25
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0
Probab=96.93 E-value=0.0033 Score=64.60 Aligned_cols=124 Identities=10% Similarity=0.137 Sum_probs=71.7
Q ss_pred cEEEEEecCCccccCCC-CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHH
Q 002963 288 ELGEIYPLGGSADRLGL-VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~-~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T 366 (862)
++.+|+||||.|||||. +.||- ++|+ .|+++++..++.+.+. + ..-.++|-|+. +-.+..
T Consensus 3 ~~~aIIlAaG~g~Rm~~~~~pK~--l~~l-----~Gkpll~~~l~~~~~~--------~--~~~~ivvv~~~--~~~~~~ 63 (246)
T 3f1c_A 3 LIYAQILAGGKGTRMGNVSMPKQ--FLPL-----NGKPIIVHTVEKFILN--------T--RFDKILISSPK--EWMNHA 63 (246)
T ss_dssp CEEEEEECC-----C-CSSCCGG--GSEE-----TTEEHHHHHHHHHHTC--------T--TCSEEEEEECG--GGHHHH
T ss_pred ccEEEEECCccccccCCCCCCCe--EEEE-----CCeeHHHHHHHHHHcC--------C--CCCEEEEEeCH--HHHHHH
Confidence 57889999999999998 77998 8876 6899999998877542 1 12356777776 333446
Q ss_pred HHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCC---cHHHHHHHhcCchHHHHH----cCceE
Q 002963 367 TSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGH---GAIWKLAHDKGIFKWFHD----NGRKG 439 (862)
Q Consensus 367 ~~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GH---GdIy~aL~~sGlLd~l~~----~Giky 439 (862)
.+.++++.. + ..+.+ + ++|. +.++.+| +.+.. .+..+
T Consensus 64 ~~~~~~~~~---~-~~~~~--------~------------------~~~~~~~~sv~~al------~~l~~~~~~~~~~~ 107 (246)
T 3f1c_A 64 EDNIKKYIS---D-DRIVV--------I------------------EGGEDRNETIMNGI------RFVEKTYGLTDDDI 107 (246)
T ss_dssp HHHHHHHCC---C-TTEEE--------E------------------ECCSSHHHHHHHHH------HHHHHHTCCCTTCE
T ss_pred HHHHHHhCC---C-CCEEE--------E------------------CCCCchHHHHHHHH------HHHhhhhcCCCCCE
Confidence 677776432 1 11211 1 1111 2455554 33433 24689
Q ss_pred EEEEeCCCccccccHhHHHHhhhhhhcC
Q 002963 440 ATVRQVSNVVAATDLTLLALAGIGLHHG 467 (862)
Q Consensus 440 i~V~qvDN~La~vDP~il~flG~~~~~~ 467 (862)
+.|.+.|.+++..+ .+-.++......+
T Consensus 108 vlv~~~d~Pli~~~-~i~~li~~~~~~~ 134 (246)
T 3f1c_A 108 IVTHDAVRPFLTHR-IIEENIDAALETG 134 (246)
T ss_dssp EEEEETTCTTCCHH-HHHHHHHHHHHTS
T ss_pred EEEecCcccCCCHH-HHHHHHHHHHhcC
Confidence 99999999998862 1223344444433
No 26
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=96.83 E-value=0.0073 Score=61.18 Aligned_cols=129 Identities=15% Similarity=0.135 Sum_probs=76.0
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
++.+|+||||.||||+ +|- ++|+ .|++++++.++++.+.. ..-.++|-|.. +...
T Consensus 3 ~~~aiIlA~G~s~R~~---~K~--l~~i-----~Gkpli~~~i~~~~~~~----------~~~~ivv~~~~-----~~i~ 57 (229)
T 1qwj_A 3 HLAALVLARGGSKGIP---LKN--IKRL-----AGVPLIGWVLRAALDAG----------VFQSVWVSTDH-----DEIE 57 (229)
T ss_dssp CEEEEEECCSCCSSSS---CTT--TSEE-----TTEEHHHHHHHHHHHHT----------CCSEEEEEESC-----HHHH
T ss_pred cEEEEEEcCCCCCCCC---Ccc--cceE-----CCEEHHHHHHHHHHhCC----------CcCEEEEECCh-----HHHH
Confidence 5778999999999997 488 8776 79999999999887642 11245555532 5567
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 002963 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (862)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvDN 447 (862)
+++++ +|. .++.++. .+ ....+.|.+.+..+|..- .+.+++.+.+.|+
T Consensus 58 ~~~~~---~g~-----~~~~~~~---------~~-------~~~~~~~~~~v~~al~~~--------~~~d~vlv~~~D~ 105 (229)
T 1qwj_A 58 NVAKQ---FGA-----QVHRRSS---------ET-------SKDSSTSLDAIVEFLNYH--------NEVDIVGNIQATS 105 (229)
T ss_dssp HHHHH---TTC-----EEEECCG---------GG-------SSTTCCHHHHHHHHHTTC--------TTCSEEEEECTTC
T ss_pred HHHHH---cCC-----EEEeChh---------hh-------cCCCCcHHHHHHHHHHhc--------CCCCEEEEecCCC
Confidence 77765 232 1222210 00 001122333455555321 2568999999999
Q ss_pred ccccccHhHHHHhhhhhhcCCceeEEE
Q 002963 448 VVAATDLTLLALAGIGLHHGKKLGFAS 474 (862)
Q Consensus 448 ~La~vDP~il~flG~~~~~~~~~~~~~ 474 (862)
++...+ .+-.++..+...+++..+.+
T Consensus 106 Pli~~~-~i~~l~~~~~~~~~~~~~~~ 131 (229)
T 1qwj_A 106 PCLHPT-DLQKVAEMIREEGYDSVFSV 131 (229)
T ss_dssp TTCCHH-HHHHHHHHHHSSCCSEEEEE
T ss_pred CcCCHH-HHHHHHHHHHhCCCCEEEEE
Confidence 998752 12233455545555554444
No 27
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*
Probab=96.80 E-value=0.0043 Score=62.84 Aligned_cols=181 Identities=9% Similarity=0.027 Sum_probs=101.7
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
++..|+||||.||||| ||- ++|+ .|+++++..++++.+. | ..-.++|.|.. +.+.
T Consensus 2 ~~~aiIlA~G~~~R~~---~K~--l~~i-----~g~pli~~~i~~~~~~--------~--~~~~ivvv~~~-----~~i~ 56 (245)
T 1h7e_A 2 KAVIVIPARYGSSRLP---GKP--LLDI-----VGKPMIQHVYERALQV--------A--GVAEVWVATDD-----PRVE 56 (245)
T ss_dssp CEEEEEECCSCCSSST---TGG--GCEE-----TTEEHHHHHHHHHHTC--------T--TCCEEEEEESC-----HHHH
T ss_pred CeEEEEEcCCcCCCCC---CCc--cccc-----CCchHHHHHHHHHHhC--------C--CCCeEEEECCc-----HHHH
Confidence 4678999999999997 998 8876 6999999988877552 2 11356666653 5677
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 002963 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (862)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvDN 447 (862)
++++++ |. .++... ...+.|-++++.++.. .+-+++.+.+.|.
T Consensus 57 ~~~~~~---~~-------------~~~~~~------------~~~~~g~~~~~~~~~~---------~~~~~~lv~~~D~ 99 (245)
T 1h7e_A 57 QAVQAF---GG-------------KAIMTR------------NDHESGTDRLVEVMHK---------VEADIYINLQGDE 99 (245)
T ss_dssp HHHHHT---TC-------------EEEECC------------SCCSSHHHHHHHHHHH---------SCCSEEEECCTTC
T ss_pred HHHHHc---CC-------------eEEeCC------------CccCCcHHHHHHHHHh---------CCCCEEEEEcCCc
Confidence 777753 32 112110 0123444556655542 1457899999999
Q ss_pred ccccccHhHHHHhhhhhhc-CCceeEEEeeecC----CCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCC
Q 002963 448 VVAATDLTLLALAGIGLHH-GKKLGFASCKRSS----GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSS 522 (862)
Q Consensus 448 ~La~vDP~il~flG~~~~~-~~~~~~~~vvRK~----~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~d 522 (862)
++...+ .+-.++..+... ++++.+.+++..+ .+ ..+.++.. .+|+ +. .+++-+... .+. +
T Consensus 100 P~~~~~-~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~g~----~~--~~~~~~~~~---~r~-~ 164 (245)
T 1h7e_A 100 PMIRPR-DVETLLQGMRDDPALPVATLCHAISAAEAAEP-STVKVVVN---TRQD----AL--YFSRSPIPY---PRN-A 164 (245)
T ss_dssp TTCCHH-HHHHHHHHHHHCTTCCEEEEEEEECHHHHTCT-TSCEEEEC---TTCB----EE--EEESSCSSC---CTT-G
T ss_pred CcCCHH-HHHHHHHHHHhCCCCCEEEEeecCCHHHhcCC-CCcEEEEC---CCCc----EE--EeecCCCCC---Ccc-c
Confidence 987642 122334444444 5666555422210 11 12334432 5665 33 333311000 000 0
Q ss_pred CCccccCccceeeeEEeHHHHHhhh
Q 002963 523 NGLQADFPANTNILYVDLASAELVG 547 (862)
Q Consensus 523 g~l~S~F~~Ninn~~fsL~~l~~vl 547 (862)
... ....|+..++|+.+.+.+.+
T Consensus 165 -~~~-~~~~~~g~y~~~~~~l~~~~ 187 (245)
T 1h7e_A 165 -EKA-RYLKHVGIYAYRRDVLQNYS 187 (245)
T ss_dssp -GGC-CEEEEEEEEEEEHHHHHHGG
T ss_pred -ccC-ceeEEEEEEEcCHHHHHHHH
Confidence 011 12249999999999887765
No 28
>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6
Probab=96.75 E-value=0.0071 Score=64.47 Aligned_cols=180 Identities=18% Similarity=0.145 Sum_probs=101.0
Q ss_pred EEEEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHH
Q 002963 289 LGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHER 365 (862)
Q Consensus 289 vAvVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~ 365 (862)
+..|+||||.||||+ ...||- ++|+ .||+++++.++.+.. .| + -.++|.|+. ...+.
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~--llpi-----~gkpli~~~l~~l~~--------~g--i-~~I~vv~~~--~~~~~ 63 (296)
T 1mc3_A 4 MKGIILAGGSGTRLHPITRGVSKQ--LLPI-----YDKPMIYYPLSVLML--------AG--I-REILIITTP--EDKGY 63 (296)
T ss_dssp CEEEEECCCCCGGGHHHHTTSCGG--GSEE-----TTEETTHHHHHHHHH--------TT--C-CEEEEEECT--TTHHH
T ss_pred cEEEEECCCCCCcCCcccCCCCce--eeEE-----CCeeHHHHHHHHHHh--------CC--C-CcEEEEech--hHHHH
Confidence 457889999999999 678998 8887 689999999887754 23 1 245666664 35667
Q ss_pred HHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHH-HHHHHhcCchHHHHHcCceEEEEEe
Q 002963 366 ITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAI-WKLAHDKGIFKWFHDNGRKGATVRQ 444 (862)
Q Consensus 366 T~~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdI-y~aL~~sGlLd~l~~~Gikyi~V~q 444 (862)
..+++.+...||+ ++.+..|. .|.|-++- +.++ +.+ . +-.++.+ .
T Consensus 64 i~~~l~~g~~~g~---~i~~~~~~----------------------~~~G~~~al~~a~------~~i-~-~~~~~lv-~ 109 (296)
T 1mc3_A 64 FQRLLGDGSEFGI---QLEYAEQP----------------------SPDGLAQAFIIGE------TFL-N-GEPSCLV-L 109 (296)
T ss_dssp HHHHHTTSGGGTC---EEEEEECS----------------------SCCCSTHHHHHTH------HHH-T-TSCEEEE-E
T ss_pred HHHHHhcccccCc---eEEEeccC----------------------CCCCHHHHHHHHH------HHh-C-CCCEEEE-E
Confidence 7788776444554 23222221 24555543 3332 122 1 2234444 4
Q ss_pred CCCccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCC
Q 002963 445 VSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNG 524 (862)
Q Consensus 445 vDN~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~ 524 (862)
.||++... .+-.++-.+...+.+..+-+ .+...+ ++-|++.. ..+|+ ++.+.|-|.. + .
T Consensus 110 gD~~~~~~--~l~~~l~~~~~~~~~~~v~~-~~v~dp-~~yg~v~~--d~~g~------v~~~~ekp~~-------~--~ 168 (296)
T 1mc3_A 110 GDNIFFGQ--GFSPKLRHVAARTEGATVFG-YQVMDP-ERFGVVEF--DDNFR------AISLEEKPKQ-------P--K 168 (296)
T ss_dssp TTEEEECS--SCHHHHHHHTTCCSSEEEEE-EECSCC-SSSBBCEE--ETTEE------EEECCBSCSS-------C--S
T ss_pred CCcccccc--CHHHHHHHHHHcCCCCEEEE-EECCCc-ccCCEEEE--CCCCc------EEEEEECCCC-------C--C
Confidence 89988653 22233444444444444432 333333 45676643 13454 4444332211 0 1
Q ss_pred ccccCccceeeeEEeHHHHHhh
Q 002963 525 LQADFPANTNILYVDLASAELV 546 (862)
Q Consensus 525 l~S~F~~Ninn~~fsL~~l~~v 546 (862)
+ ...|+..++|+-+.++.+
T Consensus 169 --s-~~~~~Giy~~~~~~l~~~ 187 (296)
T 1mc3_A 169 --S-NWAVTGLYFYDSKVVEYA 187 (296)
T ss_dssp --C-SEEEEEEEECCTHHHHHH
T ss_pred --C-CEEEEEEEEEcHHHHHHH
Confidence 1 235899999998876543
No 29
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*
Probab=96.70 E-value=0.018 Score=59.29 Aligned_cols=126 Identities=13% Similarity=0.139 Sum_probs=75.3
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
++..|+||||.||||| +|- ++|+ .|+++++..++++.+. | + -.++|.|.. +.+.
T Consensus 2 ~~~aiIlA~G~g~R~~---~K~--l~~~-----~gkpli~~~l~~l~~~--------~--~-~~ivvv~~~-----~~i~ 55 (262)
T 1vic_A 2 SFTVIIPARFASSRLP---GKP--LADI-----KGKPMIQHVFEKALQS--------G--A-SRVIIATDN-----ENVA 55 (262)
T ss_dssp CCEEEEECCCCCSSST---TGG--GCEE-----TTEEHHHHHHHHHHHT--------T--C-SEEEEEESC-----HHHH
T ss_pred CcEEEEEcCCCCCCCC---CCc--cccC-----CCeEHHHHHHHHHHhC--------C--C-ceEEEECCc-----HHHH
Confidence 4577999999999997 488 8776 6999999999887653 2 2 345666653 4566
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 002963 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (862)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvDN 447 (862)
+++++ +|. .++.+. ...|.|-|.+..+ ++.+...+-+++.|.+.|.
T Consensus 56 ~~~~~---~~~-----~~~~~~--------------------~~~~~g~~~~~~~------~~~l~~~~~~~vlv~~~D~ 101 (262)
T 1vic_A 56 DVAKS---FGA-----EVCMTS--------------------VNHNSGTERLAEV------VEKLAIPDNEIIVNIQGDE 101 (262)
T ss_dssp HHHHH---TTC-----EEEECC--------------------CSSCCHHHHHHHH------HHHTTCCTTCEEEECCTTC
T ss_pred HHHHh---cCC-----EEEECC--------------------ccccCChHHHHHH------HHHhccCCCCEEEEEeCCc
Confidence 77765 232 111110 0123344433332 2223223568999999999
Q ss_pred ccccccHhHHHHhhhhhhcCCceeEEE
Q 002963 448 VVAATDLTLLALAGIGLHHGKKLGFAS 474 (862)
Q Consensus 448 ~La~vDP~il~flG~~~~~~~~~~~~~ 474 (862)
++...+ .+-.++..+...++++.+.+
T Consensus 102 P~i~~~-~i~~l~~~~~~~~~~~~~~~ 127 (262)
T 1vic_A 102 PLIPPV-IVRQVADNLAKFNVNMASLA 127 (262)
T ss_dssp TTCCHH-HHHHHHHHHHHHTCSEEEEE
T ss_pred CccCHH-HHHHHHHHHHhcCCCEEEEE
Confidence 987642 12233455555566655544
No 30
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*
Probab=96.66 E-value=0.0093 Score=65.88 Aligned_cols=180 Identities=14% Similarity=0.115 Sum_probs=100.6
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
++..|+||||.|||||-..||. ++|+ .|++++++.++++... | .-.++|.|.. ..+...
T Consensus 5 ~~~aiIlA~G~g~Rl~~~~pK~--l~~i-----~gkpli~~~l~~l~~~--------~---~~~iivv~~~---~~~~i~ 63 (456)
T 2v0h_A 5 ALSAVILAAGKGTRMYSDLPKV--LHTI-----AGKPMVKHVIDTAHQL--------G---SENIHLIYGH---GGDLMR 63 (456)
T ss_dssp CEEEEEECCCCCGGGCSSSCGG--GSEE-----TTEEHHHHHHHHHHHT--------T---CSCEEEEECT---THHHHH
T ss_pred cceEEEECCCCCcccCCCCCcc--ccEE-----CCccHHHHHHHHHHhC--------C---CCcEEEEeCC---CHHHHH
Confidence 5778999999999999778998 8877 6899999999887653 2 1245777776 455666
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCc-HHHHHHHhcCchHHHHHcCceEEEEEeCC
Q 002963 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHG-AIWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (862)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHG-dIy~aL~~sGlLd~l~~~Gikyi~V~qvD 446 (862)
+++.+. .+.+..| + .+-|-+ .++.++.. ++ .-+++.+.+.|
T Consensus 64 ~~~~~~--------~~~~v~~---------~-------------~~~g~~~~~~~~~~~---~~-----~~~~vlv~~~D 105 (456)
T 2v0h_A 64 THLANE--------QVNWVLQ---------T-------------EQLGTAHAVQQAAPF---FK-----DNENIVVLYGD 105 (456)
T ss_dssp HHTTTC--------CCEEEEC---------S-------------CCCCHHHHHHHHGGG---CC-----TTSEEEEEETT
T ss_pred HHhhcC--------CcEEEeC---------C-------------CCCCcHHHHHHHHHh---cC-----CCCeEEEEcCC
Confidence 665432 1222111 0 122322 33433321 11 15799999999
Q ss_pred CccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcc
Q 002963 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (862)
Q Consensus 447 N~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (862)
.++...+ .+-.++..... .++.+.+ .+...+ .+-|.+.. .+|+ ...++|.....+.. .
T Consensus 106 ~P~i~~~-~i~~l~~~~~~--~~~~~~~-~~~~~~-~~~g~v~~---~~g~---v~~~~ek~~~~~~~-----------~ 163 (456)
T 2v0h_A 106 APLITKE-TLEKLIEAKPE--NGIALLT-VNLDNP-TGYGRIIR---ENGN---VVAIVEQKDANAEQ-----------L 163 (456)
T ss_dssp CTTCCHH-HHHHHHHHCCT--TSEEEEE-EECSSC-TTSCEEEE---ETTE---EEEEECTTTCCHHH-----------H
T ss_pred cceeCHH-HHHHHHHHHhc--CCEEEEE-eecCCC-CccceEEE---cCCc---EEEEEECCCCChhH-----------h
Confidence 9987642 12122333222 3444333 333322 33455543 2554 12233322211110 0
Q ss_pred ccCccceeeeEEeHHHHHhhhc
Q 002963 527 ADFPANTNILYVDLASAELVGS 548 (862)
Q Consensus 527 S~F~~Ninn~~fsL~~l~~vl~ 548 (862)
..+..|+..+.|+.+.+.+.++
T Consensus 164 ~~~~~~~Giy~~~~~~l~~~l~ 185 (456)
T 2v0h_A 164 NIKEVNTGVMVSDGASFKKWLA 185 (456)
T ss_dssp TCCEEEEEEEEEEHHHHHHHHT
T ss_pred cCcEEEEEEEEEEHHHHHHHHH
Confidence 0134589999999988877664
No 31
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*
Probab=96.57 E-value=0.021 Score=63.52 Aligned_cols=181 Identities=12% Similarity=0.070 Sum_probs=102.0
Q ss_pred EEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHHHH
Q 002963 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSL 369 (862)
Q Consensus 290 AvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~~f 369 (862)
-.|+||||.|||||-..||- ++|+ .|+++++..++++.+. | .-.++|.|.. ..+...++
T Consensus 13 ~~vIlAaG~g~R~~~~~pK~--l~~i-----~gkpli~~~l~~l~~~--------g---~~~iivv~~~---~~~~i~~~ 71 (468)
T 1hm9_A 13 FAIILAAGKGTRMKSDLPKV--LHKV-----AGISMLEHVFRSVGAI--------Q---PEKTVTVVGH---KAELVEEV 71 (468)
T ss_dssp EEEEECCCCCGGGCCSSCGG--GSEE-----TTEEHHHHHHHHHHTT--------C---CSEEEEEECT---THHHHHHS
T ss_pred cEEEEcCCCCccCCCCCCcE--eeEE-----CCccHHHHHHHHHHhc--------C---CCCEEEEECC---CHHHHHHH
Confidence 45788999999999778998 8876 6899999998877542 3 2356777776 34444443
Q ss_pred HHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeCCCc
Q 002963 370 CERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (862)
Q Consensus 370 le~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~V~qvDN~ 448 (862)
+.+ .+.+..|+ .+-|-++ ++.++ +.+. ..-+++.|.+.|.+
T Consensus 72 ~~~---------~i~~v~~~----------------------~~~G~~~sl~~a~------~~~~-~~~~~vlv~~~D~P 113 (468)
T 1hm9_A 72 LAG---------QTEFVTQS----------------------EQLGTGHAVMMTE------PILE-GLSGHTLVIAGDTP 113 (468)
T ss_dssp SSS---------SSEEEECS----------------------SCCCHHHHHHTTH------HHHT-TCCSEEEEEETTCT
T ss_pred hCC---------CcEEEeCC----------------------ccCChHHHHHHHH------HHhc-cCCCeEEEEeCCcc
Confidence 322 22221111 1223332 23222 2332 22479999999999
Q ss_pred cccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcccc
Q 002963 449 VAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQAD 528 (862)
Q Consensus 449 La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~S~ 528 (862)
+...+ .+-.++-.+...++++.+.+ .+... ...-|++.. ..+|+ ++++.|=+... . + . ...
T Consensus 114 ~i~~~-~i~~l~~~~~~~~~~~~i~~-~~~~~-~~~~g~v~~--d~~g~------v~~~~ek~~~~-~-----~-~-~~~ 174 (468)
T 1hm9_A 114 LITGE-SLKNLIDFHINHKNVATILT-AETDN-PFGYGRIVR--NDNAE------VLRIVEQKDAT-D-----F-E-KQI 174 (468)
T ss_dssp TCCHH-HHHHHHHHHHHTTCSEEEEE-EECSC-CTTSCEEEE--CTTCC------EEEEECTTTCC-T-----T-G-GGC
T ss_pred ccCHH-HHHHHHHHHHhcCCcEEEEE-eccCC-CCceeEEEE--CCCCC------EEEEEECCCCC-h-----H-H-hcC
Confidence 87642 12233555555666665554 33322 234566543 23554 33444332211 0 0 0 011
Q ss_pred CccceeeeEEeHHHHHhhhc
Q 002963 529 FPANTNILYVDLASAELVGS 548 (862)
Q Consensus 529 F~~Ninn~~fsL~~l~~vl~ 548 (862)
+..|+..++|+-+.|.+.+.
T Consensus 175 ~~~~~Giy~f~~~~l~~~l~ 194 (468)
T 1hm9_A 175 KEINTGTYVFDNERLFEALK 194 (468)
T ss_dssp CEEEEEEEEEEHHHHHHHHT
T ss_pred eEEEEEEEEEEHHHHHHHHH
Confidence 34599999999998877664
No 32
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*
Probab=96.37 E-value=0.0027 Score=63.22 Aligned_cols=54 Identities=24% Similarity=0.330 Sum_probs=42.2
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCC
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~ 358 (862)
++.+|+||||.|||||...||. ++|+ .|+++++..++++.+.. ..-.++|-|+.
T Consensus 2 ~~~~vIlA~G~g~R~~~~~~K~--l~~~-----~g~pli~~~l~~l~~~~----------~~~~i~vv~~~ 55 (223)
T 2xwl_A 2 ATVAVVPAAGSGERLRAGRPKA--FVTL-----GGTPLLEHALSGLRASG----------VIDRIVIAVPP 55 (223)
T ss_dssp CEEEEEECCCCCGGGTSSSCGG--GSEE-----TTEEHHHHHHHHHHHHS----------CCSEEEEEECG
T ss_pred ceEEEEECCccCcccCCCCCCe--eeEE-----CCeEHHHHHHHHHhcCC----------CCCeEEEEEcc
Confidence 4678999999999999767998 8876 68999999998886642 12256777776
No 33
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}
Probab=96.26 E-value=0.0019 Score=62.93 Aligned_cols=106 Identities=15% Similarity=0.114 Sum_probs=69.3
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
++..|+||||.||||| .||. ++|+ .|+++++..++++... | .-.++|.|+. ..+...
T Consensus 5 ~~~~iIlA~G~~~R~g--~~K~--l~~~-----~g~pli~~~l~~l~~~--------~---~~~i~vv~~~---~~~~~~ 61 (199)
T 2waw_A 5 RVTGVVLAAGYSRRLG--TPKQ--LLPL-----GDTTLLGATLAMARRC--------P---FDQLIVTLGG---AADEVL 61 (199)
T ss_dssp CEEEEEEESSCCTTTT--SCGG--GCEE-----TTEEHHHHHHHHHHTS--------S---CSEEEEEECT---THHHHH
T ss_pred ceEEEEECCCCCCCCC--CCEE--eCEe-----CccCHHHHHHHHHHhC--------C---CCcEEEEeCC---CHHHHH
Confidence 5788999999999999 6898 8876 6899999988877542 2 1256777776 445555
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCC-CcHHHHHHHhcCchHHHHHcCceEEEEEeCC
Q 002963 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGG-HGAIWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (862)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~G-HGdIy~aL~~sGlLd~l~~~Gikyi~V~qvD 446 (862)
+++++ +|+ +.+.+.+ .+.| .++++.+|..- ..+.+++.|...|
T Consensus 62 ~~~~~---~~~-------------~~~~~~~-------------~~~g~~~~i~~al~~~-------~~~~~~vlv~~~D 105 (199)
T 2waw_A 62 EKVEL---DGL-------------DIVLVDD-------------AGLGCSSSLKSALTWV-------DPTAEGIVLMLGD 105 (199)
T ss_dssp HHSCC---TTS-------------EEEECCC-------------CCTTCCCHHHHHHHTS-------CTTCSEEEEEETT
T ss_pred HHhcc---CCC-------------EEEECCC-------------cccCHHHHHHHHHHhh-------hccCCeEEEEeCC
Confidence 44432 221 1121110 1124 45677777542 1256899999999
Q ss_pred Cccccc
Q 002963 447 NVVAAT 452 (862)
Q Consensus 447 N~La~v 452 (862)
.++...
T Consensus 106 ~P~~~~ 111 (199)
T 2waw_A 106 QPGITA 111 (199)
T ss_dssp CTTCCH
T ss_pred cccCCH
Confidence 998765
No 34
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=96.23 E-value=0.0037 Score=64.48 Aligned_cols=64 Identities=20% Similarity=0.331 Sum_probs=47.9
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
+++.|+||||.|||||.+.||- ++++ .|+++++..++.+++.. ..-.++|.|+. +..+...
T Consensus 7 ~~~aIIlAaG~g~Rmg~~~~K~--l~~l-----~Gkpll~~~l~~~~~~~----------~~~~ivVv~~~--~~~~~~~ 67 (231)
T 3q80_A 7 EVVAIVPAAGSGERLAVGVPKA--FYQL-----DGQTLIERAVDGLLDSG----------VVDTVVVAVPA--DRTDEAR 67 (231)
T ss_dssp CEEEEEECCCCCTTTCSSSCGG--GCEE-----TTEEHHHHHHHHHHHTS----------CCCEEEEEECG--GGHHHHH
T ss_pred ceEEEEECCCCCccCCCCCCce--EEEE-----CCeEHHHHHHHHHHhCC----------CCCeEEEECCh--HHHHHHH
Confidence 6889999999999999888998 8876 79999999998876531 12256777776 3334455
Q ss_pred HHH
Q 002963 368 SLC 370 (862)
Q Consensus 368 ~fl 370 (862)
+++
T Consensus 68 ~~~ 70 (231)
T 3q80_A 68 QIL 70 (231)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 35
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A
Probab=96.23 E-value=0.0032 Score=61.33 Aligned_cols=106 Identities=15% Similarity=0.172 Sum_probs=66.8
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
++..|+||||.||||| .||. ++|+ .|+++++..++++... | .-.++|.|.. ..+...
T Consensus 5 ~~~~iIlA~G~~~R~g--~~K~--l~~~-----~g~pll~~~l~~l~~~--------~---~~~i~vv~~~---~~~~~~ 61 (197)
T 2wee_A 5 QITGVVLAAGRSNRLG--TPKQ--LLPY-----RDTTVLGATLDVARQA--------G---FDQLILTLGG---AASAVR 61 (197)
T ss_dssp EEEEEEEECCCCTTTS--SCGG--GSEE-----TTEEHHHHHHHHHHHT--------T---CSEEEEEECT---THHHHH
T ss_pred ceEEEEECCCCcccCC--CCeE--cCee-----CCccHHHHHHHHHHhc--------C---CCcEEEEeCC---CHHHHH
Confidence 5778999999999998 7898 8876 6899999998887653 2 1256777776 345544
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCC-CcHHHHHHHhcCchHHHHHcCceEEEEEeCC
Q 002963 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGG-HGAIWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (862)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~G-HGdIy~aL~~sGlLd~l~~~Gikyi~V~qvD 446 (862)
+++++ +| +. .+.+.+ .+-| .+.++.++..- ..+.+++.|...|
T Consensus 62 ~~~~~---~~-----~~--------~~~~~~-------------~~~g~~~~i~~al~~~-------~~~~~~vlv~~~D 105 (197)
T 2wee_A 62 AAMAL---DG-----TD--------VVVVED-------------VERGCAASLRVALARV-------HPRATGIVLMLGD 105 (197)
T ss_dssp HHSCC---TT-----SE--------EEECC-----------------CCHHHHHHHHTTS-------CTTEEEEEEEETT
T ss_pred HHhcc---CC-----CE--------EEECCC-------------cccCHHHHHHHHHHHh-------cccCCeEEEEeCC
Confidence 44332 22 11 121110 0113 24566665331 1256899999999
Q ss_pred Cccccc
Q 002963 447 NVVAAT 452 (862)
Q Consensus 447 N~La~v 452 (862)
.++...
T Consensus 106 ~P~~~~ 111 (197)
T 2wee_A 106 QPQVAP 111 (197)
T ss_dssp CTTCCH
T ss_pred cCCCCH
Confidence 998765
No 36
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*
Probab=96.20 E-value=0.0035 Score=63.97 Aligned_cols=190 Identities=15% Similarity=0.124 Sum_probs=100.6
Q ss_pred EEEEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHH
Q 002963 289 LGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHER 365 (862)
Q Consensus 289 vAvVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~ 365 (862)
+.+|+||||.||||+- +.||- ++|+ .|+++++..++++.+. | .-.++|.|+. .++.
T Consensus 3 ~~avIlAaG~gtRl~~lt~~~pK~--l~~i-----~gkpli~~~l~~l~~~--------g---~~~i~vv~~~---~~~~ 61 (259)
T 1tzf_A 3 SKAVILAGGLGTRLSEETIVKPKP--MVEI-----GGKPILWHIMKMYSVH--------G---IKDFIICCGY---KGYV 61 (259)
T ss_dssp CEEEEEECSCC--------CCCGG--GCEE-----TTEEHHHHHHHHHHHT--------T---CCEEEEEECT---THHH
T ss_pred cEEEEECCCCcccCCCccCCCCcc--ccEE-----CCEEHHHHHHHHHHHC--------C---CCEEEEEccc---CHHH
Confidence 4568899999999996 66898 8877 6899999988877652 3 2357888887 5678
Q ss_pred HHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCc----cccCCCCcHHHHHHHhcCchHHHHHcCceEEE
Q 002963 366 ITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAP----VCKPGGHGAIWKLAHDKGIFKWFHDNGRKGAT 441 (862)
Q Consensus 366 T~~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i----~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~ 441 (862)
+.+++.+...++ .++.+..|+.--.+. . .. ..++.+ .-.+-|.|+...+... .++ +-+++.
T Consensus 62 i~~~~~~~~~~~---~~~~~~~~~~~~~~~-~-~~---~~~~~v~~~~~~~~~gt~~al~~a~~--~~~-----~~~~~l 126 (259)
T 1tzf_A 62 IKEYFANYFLHM---SDVTFHMAENRMEVH-H-KR---VEPWNVTLVDTGDSSMTGGRLKRVAE--YVK-----DDEAFL 126 (259)
T ss_dssp HHHHHHTHHHHH---SCEEEEGGGTEEEET-T-CC---CCCCEEEEEECCSSCCHHHHHHHTGG--GTT-----TSSCEE
T ss_pred HHHHHhhccccc---ccccccccccceeee-e-cc---ccccceeeeecccccCcHHHHHHHHH--hcC-----CCCcEE
Confidence 889988643111 123343333200010 0 00 011111 1124565554332221 121 236788
Q ss_pred EEeCCCccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCC
Q 002963 442 VRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFS 521 (862)
Q Consensus 442 V~qvDN~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~ 521 (862)
|.+.|++. ..| +-.++..+...++.+.+.. ++ +...-|++.. .+|+ ++++.|-|..
T Consensus 127 v~~~D~~~-~~~--~~~~~~~~~~~~~~~t~~~-~~---~~~~~g~v~~---~~g~------v~~~~ekp~~-------- 182 (259)
T 1tzf_A 127 FTYGDGVA-DLD--IKATIDFHKAHGKKATLTA-TF---PPGRFGALDI---QAGQ------VRSFQEKPKG-------- 182 (259)
T ss_dssp EEETTEEE-CCC--HHHHHHHHHHHCCSEEEEE-EC---CCCCSEEEEE---ETTE------EEEEEESCSC--------
T ss_pred EEECCEec-ccC--HHHHHHHHHHhCCeEEEEE-ec---CCCCccEEEE---cCCE------EEEEEecCCC--------
Confidence 88899843 232 3344666656666554432 22 2234676654 2565 3444442211
Q ss_pred CCCccccCccceeeeEEeHHHH
Q 002963 522 SNGLQADFPANTNILYVDLASA 543 (862)
Q Consensus 522 dg~l~S~F~~Ninn~~fsL~~l 543 (862)
. .+..|+..++|+-+.+
T Consensus 183 ~-----~~~~~~Giy~~~~~~l 199 (259)
T 1tzf_A 183 D-----GAMINGGFFVLNPSVI 199 (259)
T ss_dssp C-----SCCEECCCEEECGGGG
T ss_pred C-----CceEEEEEEEeCHHHH
Confidence 0 1345888999988766
No 37
>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*
Probab=95.97 E-value=0.003 Score=63.30 Aligned_cols=54 Identities=11% Similarity=0.225 Sum_probs=36.0
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCC
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~ 358 (862)
++.+|+||||.|||||.+.||. ++|+ .|+++++..++++.+.. | .-.++|.|..
T Consensus 4 ~~~aiIlAaG~g~R~~~~~~K~--l~~i-----~g~pli~~~l~~l~~~~-------~---~~~ivvv~~~ 57 (228)
T 2yc3_A 4 SVSVILLAGGQGKRMKMSMPKQ--YIPL-----LGQPIALYSFFTFSRMP-------E---VKEIVVVCDP 57 (228)
T ss_dssp CEEEEEECCCCC-------CGG--GSEE-----TTEEHHHHHHHHHHHCT-------T---EEEEEEECCG
T ss_pred ceEEEEECCccccccCCCCCcc--EeEE-----CCEEHHHHHHHHHHcCC-------C---CCeEEEEECh
Confidence 5788999999999999777998 8876 68999999988876531 2 2256777775
No 38
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A
Probab=95.91 E-value=0.0035 Score=63.44 Aligned_cols=54 Identities=22% Similarity=0.274 Sum_probs=42.1
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCC
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~ 358 (862)
++..|+||||.|||||...||. ++|+ .|+++++..++++... + ..-.++|-|..
T Consensus 7 ~~~~iIlA~G~g~R~~~~~~K~--l~~i-----~g~pll~~~i~~l~~~--------~--~~~~ivvv~~~ 60 (236)
T 1i52_A 7 DVCAVVPAAGFGRRMQTECPKQ--YLSI-----GNQTILEHSVHALLAH--------P--RVKRVVIAISP 60 (236)
T ss_dssp CEEEEEEECCCCGGGCCSSCGG--GSEE-----TTEEHHHHHHHHHHTS--------T--TEEEEEEEECT
T ss_pred ceeEEEECCcCccccCCCCCcc--eeeE-----CCEEHHHHHHHHHHhC--------C--CCCeEEEEeCc
Confidence 5788999999999999767998 8876 6999999998877652 1 12356777765
No 39
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A
Probab=95.86 E-value=0.0039 Score=62.53 Aligned_cols=64 Identities=14% Similarity=0.216 Sum_probs=37.7
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
++..|+||||.|||||-+.||. ++|+ .|+++++..++++.+.. + .-.++|-|+. .++...
T Consensus 6 ~~~aiIlA~G~g~R~~~~~~K~--l~~~-----~gkpli~~~l~~l~~~~-------~---~~~ivvv~~~---~~~~~~ 65 (231)
T 1vgw_A 6 KNIALIPAAGIGVRFGADKPKQ--YVEI-----GSKTVLEHVLGIFERHE-------A---VDLTVVVVSP---EDTFAD 65 (231)
T ss_dssp CEEEEEECC----------CCS--CCEE-----TTEEHHHHHHHHHHTCT-------T---CCEEEEECCT---TCSTHH
T ss_pred ceEEEEEcccccccCCCCCCce--EeEE-----CCeEHHHHHHHHHHcCC-------C---CCeEEEEECc---cHHHHH
Confidence 5788999999999999767998 8876 69999999988775521 1 2256777776 233445
Q ss_pred HHHHH
Q 002963 368 SLCER 372 (862)
Q Consensus 368 ~fle~ 372 (862)
+ +.+
T Consensus 66 ~-~~~ 69 (231)
T 1vgw_A 66 K-VQT 69 (231)
T ss_dssp H-HHH
T ss_pred H-HHh
Confidence 5 544
No 40
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13
Probab=95.85 E-value=0.0043 Score=62.45 Aligned_cols=54 Identities=22% Similarity=0.195 Sum_probs=42.2
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCC
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~ 358 (862)
.+..|+||||.|||||.+.||. ++|+ .|+++++..++++.+. + ..-.++|-|..
T Consensus 13 ~~~aiILAaG~s~Rm~~~~~K~--l~~i-----~Gkpli~~~i~~l~~~--------~--~~~~ivVv~~~ 66 (234)
T 1vpa_A 13 MNVAILLAAGKGERMSENVPKQ--FLEI-----EGRMLFEYPLSTFLKS--------E--AIDGVVIVTRR 66 (234)
T ss_dssp CEEEEEEECCCCGGGCCSSCGG--GCEE-----TTEETTHHHHHHHHHC--------T--TCSEEEEEECG
T ss_pred cCeEEEEcCcchhhcCCCCCce--EEEE-----CCeEHHHHHHHHHHcC--------C--CCCeEEEEECh
Confidence 5788999999999999777998 8876 7999999999887652 1 12256777765
No 41
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*
Probab=95.70 E-value=0.0056 Score=61.29 Aligned_cols=65 Identities=15% Similarity=0.202 Sum_probs=39.2
Q ss_pred EEEEEecCCccccCCC-CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 289 LGEIYPLGGSADRLGL-VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 289 vAvVlLAGGlGTRLG~-~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
+..|+||||.|||||- ..||. ++|+ .|+++++..++++.+.. + .-.++|.|.. ...+...
T Consensus 3 ~~~iIlA~G~g~R~~~~~~~K~--l~~i-----~g~pli~~~l~~l~~~~-------~---~~~i~vv~~~--~~~~~~~ 63 (236)
T 2vsh_A 3 IYAGILAGGTGTRMGISNLPKQ--FLEL-----GDRPILIHTIEKFVLEP-------S---IEKIVVGVHG--DWVSHAE 63 (236)
T ss_dssp EEEEEEEC-----------CGG--GSEE-----TTEEHHHHHHHHHHTCT-------T---CCCEEEEECG--GGHHHHH
T ss_pred eEEEEeCCccccccCCCCCCCe--eeee-----CCccHHHHHHHHHHcCC-------C---CCeEEEEeCH--HHHHHHH
Confidence 5678999999999995 56898 8876 68999999888775421 1 2256777776 3336677
Q ss_pred HHHHH
Q 002963 368 SLCER 372 (862)
Q Consensus 368 ~fle~ 372 (862)
+++++
T Consensus 64 ~~~~~ 68 (236)
T 2vsh_A 64 DLVDK 68 (236)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77765
No 42
>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}
Probab=95.69 E-value=0.0047 Score=60.59 Aligned_cols=62 Identities=21% Similarity=0.370 Sum_probs=45.0
Q ss_pred EEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHHHH
Q 002963 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSL 369 (862)
Q Consensus 290 AvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~~f 369 (862)
..|+||||.|||||- .||. ++|+ .|+++++..++++.+. | .-.++|.|+. .++.+.++
T Consensus 2 ~aiIlA~G~s~R~~~-~~K~--l~~~-----~g~pli~~~l~~l~~~--------~---~~~v~vv~~~---~~~~i~~~ 59 (196)
T 3rsb_A 2 DALIMAGGKGTRMGG-VEKP--LIKL-----CGRCLIDYVVSPLLKS--------K---VNNIFIATSP---NTPKTKEY 59 (196)
T ss_dssp EEEEEC----CGGGG-SCGG--GCEE-----TTEEHHHHHHHHHHSS--------S---CCCEEEECCT---TCHHHHHH
T ss_pred EEEEECCCCCCcCCC-CCcc--EEEE-----CCEEHHHHHHHHHHHC--------C---CCEEEEEeCC---ChHHHHHH
Confidence 468899999999986 7898 8776 7999999998877542 2 2367888887 46888899
Q ss_pred HHHh
Q 002963 370 CERL 373 (862)
Q Consensus 370 le~n 373 (862)
+++.
T Consensus 60 ~~~~ 63 (196)
T 3rsb_A 60 INSA 63 (196)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 9873
No 43
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}
Probab=95.66 E-value=0.0055 Score=60.83 Aligned_cols=48 Identities=17% Similarity=0.183 Sum_probs=38.0
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCC
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~ 358 (862)
++..|+||||.|||||. ||. ++|+ .|+++++..++++.. . .++|.|+.
T Consensus 2 ~~~~iIlAgG~g~Rmg~--~K~--l~~i-----~g~pll~~~l~~l~~------------~--~ivvv~~~ 49 (197)
T 3d5n_A 2 NIGVIILAAGEGKRFGG--DKL--LAKI-----DNTPIIMRTIRIYGD------------L--EKIIIVGK 49 (197)
T ss_dssp CEEEEEECSCCTTCCCS--SGG--GSBS-----SSSBHHHHHHHHTTT------------S--BCCEEECT
T ss_pred ceEEEEECCcCcccCCC--Cee--eCEe-----CceEHHHHHHHHHHh------------C--CEEEEECC
Confidence 36789999999999994 898 8776 789999998876543 2 56777776
No 44
>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*
Probab=95.63 E-value=0.0063 Score=60.80 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=34.0
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQ 334 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~ 334 (862)
++..|+||||.|+||| ..||. ++|+ .|+++++..++++.
T Consensus 6 ~~~~iILAgG~s~Rmg-~~~K~--ll~i-----~G~pli~~~l~~l~ 44 (201)
T 1e5k_A 6 TITGVVLAGGKARRMG-GVDKG--LLEL-----NGKPLWQHVADALM 44 (201)
T ss_dssp SEEEEEECCCCCSSSC-SSCGG--GSEE-----TTEEHHHHHHHHHH
T ss_pred cceEEEEcCCCCCcCC-CCCCc--eeeE-----CceeHHHHHHHHHH
Confidence 5788999999999999 57898 8876 68999999998876
No 45
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}
Probab=95.29 E-value=0.0072 Score=61.71 Aligned_cols=37 Identities=35% Similarity=0.456 Sum_probs=25.6
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRD 332 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~ 332 (862)
+++.|+||||.|||||.. ||. ++|+ .|+++++..+++
T Consensus 25 ~~~aiILAgG~s~Rm~~~-~K~--l~~i-----~gkpli~~~l~~ 61 (236)
T 2px7_A 25 EVSVLIPAAGNGLRLGRG-PKA--FLQV-----GGRTLLEWTLAA 61 (236)
T ss_dssp CCEEEEECCC-------C-CGG--GCBC-----SSSBHHHHHHHH
T ss_pred ceEEEEEcCCCCccCCCC-CCe--EEEE-----CCEEHHHHHHHh
Confidence 567889999999999976 998 8776 799999998887
No 46
>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}
Probab=95.12 E-value=0.0091 Score=59.93 Aligned_cols=178 Identities=13% Similarity=0.088 Sum_probs=97.2
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
++..|+||||.||||| ||. ++|+ .|+++++..++++... . -.++|.|.. +...
T Consensus 2 ~~~aiIlA~G~g~R~~---~K~--l~~i-----~g~pli~~~l~~~~~~-------~-----~~i~v~~~~-----~~i~ 54 (234)
T 2y6p_A 2 RRAVIIPARLGSTRLK---EKP--LKNL-----LGKPLIRWVVEGLVKT-------G-----ERVILATDS-----ERVK 54 (234)
T ss_dssp CEEEEEECCSCCTTTT---TGG--GCEE-----TTEEHHHHHHHHHHTT-------T-----SCEEEEESC-----HHHH
T ss_pred ceEEEEEcCCCCCCCC---CCc--ceeE-----CCEEHHHHHHHHHHHh-------C-----CEEEEECCh-----HHHH
Confidence 4678999999999999 998 8877 6899999998877542 1 134555543 4556
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 002963 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (862)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvDN 447 (862)
++++++ . .+ +... ...+.|-|+++.++.. .+-+++.+.+.|.
T Consensus 55 ~~~~~~----~---~~----------~~~~------------~~~~~g~~~~~~~~~~---------~~~~~vlv~~~D~ 96 (234)
T 2y6p_A 55 EVVEDL----C---EV----------FLTP------------SDLPSGSDRVLYVVRD---------LDVDLIINYQGDE 96 (234)
T ss_dssp HHHTTT----S---EE----------EECC------------TTCCSHHHHHHHHHTT---------CCCSEEEECCTTC
T ss_pred HHHHhc----e---EE----------EECC------------cccccchHHHHHHHHh---------CCCCEEEEecCCc
Confidence 665431 0 11 1100 0124566666654432 1457999999999
Q ss_pred ccccccHhHHHHhhhhhhcCCceeEEEeeec---CCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCC
Q 002963 448 VVAATDLTLLALAGIGLHHGKKLGFASCKRS---SGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNG 524 (862)
Q Consensus 448 ~La~vDP~il~flG~~~~~~~~~~~~~vvRK---~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~ 524 (862)
++...+ .+-.++..+...+ +....+.+.. ..+ ..++++.. .+|+ ++.+.+-+.....+. .+
T Consensus 97 P~~~~~-~i~~l~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~---~~g~------v~~~~e~~~~~~~~~--~~-- 160 (234)
T 2y6p_A 97 PFVYEE-DIKLIFRELEKGE-RVVTLARKDKEAYERP-EDVKVVLD---REGY------ALYFSRSPIPYFRKN--DT-- 160 (234)
T ss_dssp CCCCHH-HHHHHHHHHHHTC-SEEEEEEECSGGGGCT-TSCEEEEC---TTSB------EEEEESSCCSCCSSC--CS--
T ss_pred CcCCHH-HHHHHHHHHHhCC-CeEEEecCCHHHhcCC-CceEEEEc---CCCC------EeeeecCCCCccccc--cc--
Confidence 887631 1223344444444 3322221211 112 23454432 4665 333333221100000 01
Q ss_pred ccccCccceeeeEEeHHHHHhhhc
Q 002963 525 LQADFPANTNILYVDLASAELVGS 548 (862)
Q Consensus 525 l~S~F~~Ninn~~fsL~~l~~vl~ 548 (862)
. .+..|+..++|+-+.+.++..
T Consensus 161 -~-~~~~~~giy~~~~~~l~~~~~ 182 (234)
T 2y6p_A 161 -F-YPLKHVGIYGFRKETLMEFGA 182 (234)
T ss_dssp -S-CCEEEEEEEEEEHHHHHHHHH
T ss_pred -c-eeeEEEEEEEcCHHHHHHHHh
Confidence 1 122499999999999887653
No 47
>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}
Probab=95.05 E-value=0.0093 Score=60.44 Aligned_cols=36 Identities=25% Similarity=0.468 Sum_probs=31.0
Q ss_pred EEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHH
Q 002963 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQ 334 (862)
Q Consensus 290 AvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~ 334 (862)
..|+||||.|+||| .+|. ++++ .|+++++..++.+.
T Consensus 2 ~aiILAgG~s~Rmg--~~K~--ll~~-----~G~pli~~~~~~l~ 37 (208)
T 3ngw_A 2 KVAVLVGGVGRRIG--MEKT--EVML-----CGKKLIEWVLEKYS 37 (208)
T ss_dssp EEEEECCCCCTTTT--SCGG--GCEE-----TTEEHHHHHHHHHT
T ss_pred EEEEECCCchhhCC--CCCc--ccEE-----CCeeHHHHHHHHhc
Confidence 57889999999999 7898 8876 79999999888764
No 48
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*
Probab=94.76 E-value=0.012 Score=60.77 Aligned_cols=63 Identities=21% Similarity=0.225 Sum_probs=45.7
Q ss_pred cEEEEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchH
Q 002963 288 ELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 364 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The 364 (862)
++..|+||||.||||+ ...||. ++|+ .|+++++..++++... | + -.++|.|.. ..+
T Consensus 25 ~~~aiIlAaG~gtRl~plt~~~pK~--l~~i-----~gkpli~~~l~~l~~~--------g--~-~~i~vv~~~---~~~ 83 (254)
T 1jyk_A 25 RVKAIILAAGLGTRLRPLTENTPKA--LVQV-----NQKPLIEYQIEFLKEK--------G--I-NDIIIIVGY---LKE 83 (254)
T ss_dssp CCEEEEEECSCCGGGTTTTSSSCGG--GCEE-----TTEEHHHHHHHHHHHT--------T--C-CCEEEEECT---TGG
T ss_pred CceEEEECCCCcccCCcccCCCCCE--EeeE-----CCEEHHHHHHHHHHHC--------C--C-CeEEEEeCC---cHH
Confidence 5678899999999998 577998 8876 6899999999887653 3 1 245777765 334
Q ss_pred HHHHHHH
Q 002963 365 RITSLCE 371 (862)
Q Consensus 365 ~T~~fle 371 (862)
....+++
T Consensus 84 ~i~~~~~ 90 (254)
T 1jyk_A 84 QFDYLKE 90 (254)
T ss_dssp GGTHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 49
>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}
Probab=94.50 E-value=0.0083 Score=62.36 Aligned_cols=38 Identities=26% Similarity=0.409 Sum_probs=32.1
Q ss_pred EEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 002963 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (862)
Q Consensus 291 vVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (862)
+|+||||.||||+ .+.||- ++|+ .||++++..++++..
T Consensus 2 ~iIlAaG~GtRl~plt~~~PK~--llpv-----~gkpli~~~l~~l~~ 42 (255)
T 4evw_A 2 IVIPMAGMSSRFFKAGYTQPKY--MLEA-----HGQTLFEHSVNSFAA 42 (255)
T ss_dssp EEEECCSCCHHHHHTTCCSCGG--GCEE-----TTEEHHHHHHGGGGG
T ss_pred EEEEcCCCCcccccCCCCCCcc--ccEE-----CCeEHHHHHHHHHhc
Confidence 5889999999996 467999 9887 689999999887654
No 50
>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}
Probab=94.26 E-value=0.0051 Score=61.29 Aligned_cols=50 Identities=16% Similarity=0.251 Sum_probs=38.9
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCC
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~ 358 (862)
++..|+||||.||||| .||. ++|+ .|+++++..++++... .-.++|-|..
T Consensus 14 ~~~~iILA~G~g~Rmg--~~K~--ll~i-----~g~pll~~~l~~l~~~------------~~~i~vv~~~ 63 (201)
T 2e8b_A 14 VNTCYVLAGGKSKRFG--EDKL--LYEI-----KGKKVIERVYETAKSV------------FKEVYIVAKD 63 (201)
T ss_dssp CCEEEEEEESSCCCCS--TTHH--HHHH-----HHHHHHHHHHHHHHTT------------CSEEEEEESC
T ss_pred CceEEEECCCCCccCC--CCcc--cceE-----CceEHHHHHHHHHHHh------------CCEEEEEeCc
Confidence 5678999999999999 7898 8876 6899999988876542 1256777776
No 51
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}
Probab=94.22 E-value=0.034 Score=58.53 Aligned_cols=64 Identities=20% Similarity=0.335 Sum_probs=48.2
Q ss_pred cEEEEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchH
Q 002963 288 ELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 364 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The 364 (862)
.+.+|+||||.||||+- ..||- ++|+ .|+++++..++++... | .-.++|.|+. ..+
T Consensus 8 ~~~avIlAaG~gtRl~plt~~~pK~--ll~i-----~gkpli~~~l~~l~~~--------g---i~~i~vv~~~---~~~ 66 (302)
T 2e3d_A 8 VKKAVIPVAGLGTRMLPATKAIPKE--MLPL-----VDKPLIQYVVNECIAA--------G---ITEIVLVTHS---SKN 66 (302)
T ss_dssp CCEEEEECCSCCGGGTTTTSSSCGG--GCEE-----TTEEHHHHHHHHHHHT--------T---CCEEEEEECG---GGH
T ss_pred ccEEEEECCcCcccCCccccCCCce--eeEE-----CCeEHHHHHHHHHHHC--------C---CCEEEEEeCC---CHH
Confidence 35678899999999984 56898 8877 6899999999887652 3 1246777776 567
Q ss_pred HHHHHHHH
Q 002963 365 RITSLCER 372 (862)
Q Consensus 365 ~T~~fle~ 372 (862)
.+.+++.+
T Consensus 67 ~i~~~~~~ 74 (302)
T 2e3d_A 67 SIENHFDT 74 (302)
T ss_dssp HHHHHHSC
T ss_pred HHHHHHhc
Confidence 77777754
No 52
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*
Probab=94.14 E-value=0.017 Score=58.24 Aligned_cols=42 Identities=17% Similarity=0.224 Sum_probs=28.6
Q ss_pred cCcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 002963 286 LPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (862)
Q Consensus 286 L~kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (862)
..++..|+||||.|||||-. ||. ++|+ .|+++++..++++..
T Consensus 16 m~~~~~iIlA~G~g~R~~~~-~K~--l~~i-----~g~pli~~~l~~l~~ 57 (232)
T 2xme_A 16 IKLMKAVILAAGLGTRLGGV-PKP--LVRV-----GGCEIILRTMKLLSP 57 (232)
T ss_dssp CCCEEEEEEECC------CC-CGG--GCEE-----TTEEHHHHHHHHHGG
T ss_pred cccceEEEECCcCcCcCCCC-CcE--EeEE-----CCEEHHHHHHHHHHH
Confidence 44688899999999999744 998 8876 689999998877644
No 53
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}
Probab=93.91 E-value=0.035 Score=58.32 Aligned_cols=64 Identities=16% Similarity=0.278 Sum_probs=47.8
Q ss_pred cEEEEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchH
Q 002963 288 ELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 364 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The 364 (862)
.+..|+||||.||||+- ..||- ++|+ .|+++++..++++... | .-.++|.|.. ..+
T Consensus 14 ~~~avIlAaG~gtRl~plt~~~pK~--ll~i-----~gkpli~~~l~~l~~~--------g---~~~i~vv~~~---~~~ 72 (297)
T 2ux8_A 14 LRKAVFPVAGLGTRFLPATKAMPKE--MLPV-----VDRPLIQYAVDEAVEA--------G---IEQMIFVTGR---GKS 72 (297)
T ss_dssp CCEEEEEECCCCGGGTTTTSSSCGG--GCEE-----TTEEHHHHHHHHHHHT--------T---CCEEEEEECT---TCH
T ss_pred ccEEEEECCCCccccCccccCCCce--eeeE-----CCeEHHHHHHHHHHhC--------C---CCEEEEEeCC---CHH
Confidence 56778999999999984 56898 8877 6899999999887652 3 1246777776 466
Q ss_pred HHHHHHHH
Q 002963 365 RITSLCER 372 (862)
Q Consensus 365 ~T~~fle~ 372 (862)
...++|.+
T Consensus 73 ~i~~~~~~ 80 (297)
T 2ux8_A 73 ALEDHFDI 80 (297)
T ss_dssp HHHHHTSC
T ss_pred HHHHHHhh
Confidence 77776653
No 54
>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*
Probab=93.58 E-value=0.034 Score=60.35 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=32.9
Q ss_pred EEEEecCCccccCC----CCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 002963 290 GEIYPLGGSADRLG----LVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (862)
Q Consensus 290 AvVlLAGGlGTRLG----~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (862)
..|+||||.||||+ ...||- ++|+. .+++++|..++++..
T Consensus 3 ~~VILAgG~GtRl~Pls~~~~pK~--ll~l~----g~~pli~~~l~~l~~ 46 (336)
T 2x65_A 3 KALILAGGSGERFWPLSTPETPKQ--FLKLF----GNKSLMRWTFERVLE 46 (336)
T ss_dssp EEEEECCCBCGGGTTTSCTTCBGG--GCCCB----TTBCHHHHHHHHHHT
T ss_pred EEEEECCCCCccCCCCcCCCCCce--EEECC----CCCcHHHHHHHHHhc
Confidence 46789999999998 558998 88874 339999999988765
No 55
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=93.49 E-value=0.041 Score=58.88 Aligned_cols=62 Identities=21% Similarity=0.236 Sum_probs=45.5
Q ss_pred EEEEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHH
Q 002963 289 LGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHER 365 (862)
Q Consensus 289 vAvVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~ 365 (862)
+.+|+||||.||||+- ..||- ++|+ .|+++++..++++... | .-.++|.|+. ..+.
T Consensus 13 ~~aVIlAaG~gtRl~plt~~~pK~--ll~i-----~gkpli~~~l~~l~~~--------g---i~~iivv~~~---~~~~ 71 (323)
T 2pa4_A 13 KTVVVPAAGLGTRFLPATKTVPKE--LLPV-----VDTPGIELIAAEAAEL--------G---ATRLAIITAP---NKAG 71 (323)
T ss_dssp CEEEEECCCCCGGGTTGGGTSCGG--GCEE-----TTEEHHHHHHHHHHHT--------T---CCEEEEEECT---TCHH
T ss_pred eEEEEECCCCccccCccccCCCce--eeeE-----CCEEHHHHHHHHHHhC--------C---CCEEEEEecC---cHHH
Confidence 4578899999999985 67998 8887 6899999999887642 3 1246777776 4556
Q ss_pred HHHHHH
Q 002963 366 ITSLCE 371 (862)
Q Consensus 366 T~~fle 371 (862)
..++|.
T Consensus 72 i~~~~~ 77 (323)
T 2pa4_A 72 VLAHFE 77 (323)
T ss_dssp HHHTTS
T ss_pred HHHHHh
Confidence 655543
No 56
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*
Probab=93.24 E-value=0.039 Score=61.02 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=35.2
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (862)
+++.|+||||.|||||...||. ++|+ .|+++++..++++.+
T Consensus 3 ki~aIILAaG~ssRmg~~~pK~--ll~l-----~GkPLi~~~l~~l~~ 43 (371)
T 1w55_A 3 EMSLIMLAAGNSTRFNTKVKKQ--FLRL-----GNDPLWLYATKNLSS 43 (371)
T ss_dssp CEEEEEECCSCCTTTCSSSCGG--GCEE-----BTEEHHHHHHHHHHT
T ss_pred ccEEEEECCCCCccCCCCCCcc--eEEE-----CCeEHHHHHHHHHHc
Confidence 5778999999999999767998 8876 699999998887754
No 57
>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20
Probab=92.11 E-value=0.071 Score=57.82 Aligned_cols=41 Identities=29% Similarity=0.341 Sum_probs=33.5
Q ss_pred EEEEEecCCccccCC----CCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 002963 289 LGEIYPLGGSADRLG----LVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (862)
Q Consensus 289 vAvVlLAGGlGTRLG----~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (862)
+..|+||||.||||. ...||- ++|+. .+++++|..++++..
T Consensus 3 m~~VILAgG~GtRl~Pls~~~~pK~--ll~l~----G~~pli~~~l~~l~~ 47 (337)
T 2cu2_A 3 TYALVMAGGRGERLWPLSREDRPKP--FLPLF----EGKTLLEATLERLAP 47 (337)
T ss_dssp EEEEEECCCCCGGGTTTCBTTBCGG--GCBCG----GGCBHHHHHHHHHTT
T ss_pred eEEEEEcCCCcccCCccCCCCCCce--EEEcC----CCChHHHHHHHHHhC
Confidence 567899999999997 457998 88874 339999999988755
No 58
>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19
Probab=90.91 E-value=0.11 Score=52.58 Aligned_cols=40 Identities=33% Similarity=0.527 Sum_probs=32.2
Q ss_pred cEEEEEecCCc---cccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 002963 288 ELGEIYPLGGS---ADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (862)
Q Consensus 288 kvAvVlLAGGl---GTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (862)
++.+|+||||. |+||| ..||. ++|+ .|+++++..++++..
T Consensus 2 ~~~~vIlAaG~tRl~~r~~-~~~K~--l~~i-----~g~pll~~~l~~l~~ 44 (232)
T 2dpw_A 2 RPSAIVLAGGKEAWAERFG-VGSKA--LVPY-----RGRPMVEWVLEALYA 44 (232)
T ss_dssp CCEEEEECCCBCSGGGTTT-CSBGG--GSEE-----TTEETHHHHHHHHHH
T ss_pred ceeEEEECCCCCccccccC-CCCce--eeEE-----CCEEHHHHHHHHHHh
Confidence 35678899999 77776 36898 8876 689999999988765
No 59
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
Probab=90.63 E-value=0.11 Score=56.61 Aligned_cols=60 Identities=23% Similarity=0.326 Sum_probs=44.5
Q ss_pred EEEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHH
Q 002963 290 GEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (862)
Q Consensus 290 AvVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T 366 (862)
..|+||||.|+||+ ...||. ++|+ .|+++++..++++.+. | .-.++|.|+. . .
T Consensus 2 ~aiIlA~G~g~R~~plt~~~~K~--ll~i-----~g~pli~~~l~~l~~~--------~---~~~i~vv~~~--~----i 57 (401)
T 2ggo_A 2 KAFILAAGSGERLEPITHTRPKA--FVPI-----LSKPLIEYQIEYLRKC--------G---IRDITVIVSS--K----N 57 (401)
T ss_dssp EEEEECCCCCGGGTTGGGTSCGG--GCEE-----TTEEHHHHHHHHHHHT--------T---CCEEEEEECG--G----G
T ss_pred eEEEEcCcCccccCcccCCCCcc--eeeE-----CCEeHHHHHHHHHHHC--------C---CCEEEEEeCH--H----H
Confidence 36889999999997 467898 8876 6899999999887652 2 1246777776 3 6
Q ss_pred HHHHHHh
Q 002963 367 TSLCERL 373 (862)
Q Consensus 367 ~~fle~n 373 (862)
.+++++.
T Consensus 58 ~~~~~~~ 64 (401)
T 2ggo_A 58 KEYFEKK 64 (401)
T ss_dssp HHHHHHH
T ss_pred HHHhhcc
Confidence 6777653
No 60
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=51.17 E-value=47 Score=32.15 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=42.7
Q ss_pred EEeeCceeeecCCCcccccc--------ceeee---EEEEEEecCceeEee----------ceeEecCeEEEecCCeeEE
Q 002963 761 KVLNKGIDWDCGDNTYWKHD--------VQWFE---ALKVILHGNAEFEAS----------DVTLQGNHVFEVPDGHKLK 819 (862)
Q Consensus 761 ~V~N~G~~~~~~~~~~w~~~--------~~r~e---~~~i~~~g~~ef~a~----------~v~~~g~~~~~vp~g~~~~ 819 (862)
.|.|.||...... |+.+ +++|+ =+=|+|+|....+.+ .|+++=..+|+||-|..=+
T Consensus 19 ~~~~~~W~Va~~n---~~~~~~~~~i~~~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVPkGveH~ 95 (140)
T 3d0j_A 19 VYKNEKWLVCIKN---WKPDNDIEGIAHLEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVPAECWFY 95 (140)
T ss_dssp EEECSSEEEEEEE---CCGGGBTTTCCEEEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEECTTCEEE
T ss_pred EEEcCCEEEEEEe---ccCcCCcccCHhhccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeCCCccCc
Confidence 4569999987654 5433 34443 255778888877666 6999999999999998776
Q ss_pred EeeC
Q 002963 820 ITSG 823 (862)
Q Consensus 820 ~~~~ 823 (862)
-...
T Consensus 96 p~a~ 99 (140)
T 3d0j_A 96 SITQ 99 (140)
T ss_dssp EEEC
T ss_pred ccCC
Confidence 4433
No 61
>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}
Probab=35.75 E-value=64 Score=34.30 Aligned_cols=59 Identities=20% Similarity=0.171 Sum_probs=46.4
Q ss_pred ccccccceeeeEEEEEEecCceeEeeceeE--ecC----------eEEEecCCeeEEEeeCCC-ceEEEecc
Q 002963 775 TYWKHDVQWFEALKVILHGNAEFEASDVTL--QGN----------HVFEVPDGHKLKITSGNS-GLVVQLDP 833 (862)
Q Consensus 775 ~~w~~~~~r~e~~~i~~~g~~ef~a~~v~~--~g~----------~~~~vp~g~~~~~~~~~~-~~~~~~~~ 833 (862)
.-+..+..|+|.|-|.|.|.++.++.+.++ .|. .+.=||.|-+.+|+...+ .+.+.-.|
T Consensus 40 e~~~~~~~~~E~~iv~l~G~~~V~~~g~~~~~~g~R~svF~~~~p~~lYvp~g~~v~i~a~~~~~~~v~sAp 111 (270)
T 2qjv_A 40 ESITLPSDERERCLVLVAGLASVXAADSFFYRIGQRMSPFERIPAYSVYLPHHTEAXVTAETDLELAVCSAP 111 (270)
T ss_dssp CEEEECCSSEEEEEEEEESCEEEEETTEEEEEECCCSSGGGCSCCCEEEECSSCCEEEEESSSEEEEEEEEE
T ss_pred CEEEecCCCcEEEEEEecceEEEEECCEEEeccccccccccCCCCcEEEECCCCEEEEEecCCceEEEEeee
Confidence 456778899999999999999999999877 343 588899999999986644 55554444
No 62
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=22.23 E-value=76 Score=27.89 Aligned_cols=32 Identities=25% Similarity=0.562 Sum_probs=22.6
Q ss_pred CCCceEEEeccccccccCCCcceEEEEEeCCeEEEEE
Q 002963 823 GNSGLVVQLDPIEQNMMDTGSWHWNYKINGSHIVLEL 859 (862)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~w~w~y~~~~~~~~l~~ 859 (862)
|++||.+..+|= ++-+|++.|+++|-...+.|
T Consensus 22 Dg~GL~L~V~ps-----G~K~w~~ryr~~Gk~~~~~L 53 (88)
T 3jtz_A 22 DSHGLYLLVKPG-----GSRHWYLKYRISGKESRIAL 53 (88)
T ss_dssp CSTTEEEEECTT-----SCEEEEEEEEETTEEEEEEE
T ss_pred cCCceEEEEecC-----CCEEEEEEEEeCCeEEEEEe
Confidence 456887777763 34789999998776655554
Done!