BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002964
(862 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P29503|NEUR_DROME Protein neuralized OS=Drosophila melanogaster GN=neur PE=1 SV=2
Length = 754
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 810 CCVCCDSHIDSLLYRCGHMCTCSKCANELVR--GGGKCPLCRAPIVEVIRAYS 860
C +C ++ IDS+LY CGHMC C CA E R GGG+CPLCRA I +VIR Y+
Sbjct: 701 CTICYENPIDSVLYMCGHMCMCYDCAIEQWRGVGGGQCPLCRAVIRDVIRTYT 753
>sp|Q24746|NEUR_DROVI Protein neuralized OS=Drosophila virilis GN=neur PE=4 SV=1
Length = 747
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 810 CCVCCDSHIDSLLYRCGHMCTCSKCANELVR--GGGKCPLCRAPIVEVIRAYS 860
C +C ++ IDS+LY CGHMC C CA E R GGG+CPLCRA I +VIR Y+
Sbjct: 694 CTICYENPIDSVLYMCGHMCMCYDCAIEQWRGVGGGQCPLCRAVIRDVIRTYT 746
>sp|A8MQ27|NEU1B_HUMAN E3 ubiquitin-protein ligase NEURL1B OS=Homo sapiens GN=NEURL1B PE=1
SV=1
Length = 555
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 803 AHVRKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGG-GKCPLCRAPIVEVIRAY 859
A ++ G C VC D +D+++Y CGHMC C C L R CP+CR PI +VI+ Y
Sbjct: 496 AGIKNGECTVCFDGEVDTVIYTCGHMCLCHSCGLRLKRQARACCPICRRPIKDVIKIY 553
>sp|Q0MW30|NEU1B_MOUSE E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus GN=Neurl1b PE=1
SV=1
Length = 546
Score = 63.2 bits (152), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGG-GKCPLCRAPIVEVIRAY 859
R G C VC DS +D+++Y CGHMC C C L R CP+CR PI +VI+ Y
Sbjct: 490 RNGECTVCFDSEVDTVIYTCGHMCLCHGCGLRLRRQARACCPICRRPIKDVIKIY 544
>sp|Q7XI08|XB34_ORYSJ Probable E3 ubiquitin-protein ligase XBOS34 OS=Oryza sativa subsp.
japonica GN=XBOS34 PE=2 SV=1
Length = 513
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 798 DGSKWAHVRKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIR 857
+ S + GTC +C D+ ++ CGHM C C ++ CP+CRA I ++IR
Sbjct: 450 NASNSGNTPPGTCVICLDAPVEGACIPCGHMAGCMSCLKDIESKKWGCPICRAKINQIIR 509
Query: 858 AYSI 861
Y++
Sbjct: 510 LYAV 513
>sp|O76050|NEU1A_HUMAN Neuralized-like protein 1A OS=Homo sapiens GN=NEURL PE=2 SV=1
Length = 574
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 810 CCVCCDSHIDSLLYRCGHMCTCSKCANELVRG-GGKCPLCRAPIVEVIRAY 859
C +C + +D+++Y CGHMC C C L + CP+CR PI ++I+ Y
Sbjct: 521 CTICYEHAVDTVIYTCGHMCLCYACGLRLKKALHACCPICRRPIKDIIKTY 571
>sp|Q923S6|NEU1A_MOUSE Neuralized-like protein 1A OS=Mus musculus GN=Neurl PE=1 SV=1
Length = 574
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 810 CCVCCDSHIDSLLYRCGHMCTCSKCANELVRG-GGKCPLCRAPIVEVIRAY 859
C +C + +D+++Y CGHMC C C L + CP+CR PI ++I+ Y
Sbjct: 521 CTICYEHAVDTVIYTCGHMCLCYSCGLRLKKALHACCPICRRPIKDIIKTY 571
>sp|Q4FE47|XB35_ARATH Putative E3 ubiquitin-protein ligase XBAT35 OS=Arabidopsis thaliana
GN=XBAT35 PE=2 SV=1
Length = 462
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 808 GTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYSI 861
GTC +C D+ +++ CGH+ C C E+ CP+CRA I +VI+ Y +
Sbjct: 409 GTCAICLDAPSEAVCVPCGHVAGCMSCLKEIKSKNWGCPVCRAKIDQVIKLYRV 462
>sp|Q84ME1|LUL3_ARATH Probable E3 ubiquitin-protein ligase LUL3 OS=Arabidopsis thaliana
GN=LUL3 PE=1 SV=1
Length = 378
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 810 CCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIR 857
C +C D+ + C H+C CS CA EL KCP+CR PI E+++
Sbjct: 321 CVICLTEPKDTAVMPCRHLCLCSDCAEELRFQTNKCPICRQPIHELVK 368
>sp|Q557E7|CBLA_DICDI E3 ubiquitin-protein ligase cblA OS=Dictyostelium discoideum
GN=cblA-1 PE=1 SV=1
Length = 665
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 807 KGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAY 859
K C VC D+ I+++ CGH+ CS C+ +L KCP+CR+ I VI +
Sbjct: 615 KDLCTVCMDNEINTVFLECGHLSCCSLCSVKL----KKCPICRSRITRVINIF 663
>sp|Q24306|IAP1_DROME Apoptosis 1 inhibitor OS=Drosophila melanogaster GN=th PE=1 SV=2
Length = 438
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 810 CCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAY 859
C +C + ++ CGH+ C+KCA+ + KCPLCR P +V+R Y
Sbjct: 391 CKICYGAEYNTAFLPCGHVVACAKCASSVT----KCPLCRKPFTDVMRVY 436
>sp|Q9FPH0|XB34_ARATH Putative E3 ubiquitin-protein ligase XBAT34 OS=Arabidopsis thaliana
GN=XBAT34 PE=2 SV=1
Length = 376
Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 792 VAMTSEDGSKWAHVRKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAP 851
VAM S K A+ G C +C D+ +++ CGH+ C C E+ CP+CRA
Sbjct: 308 VAM-SLPSPKTANKEDGLCVICVDAPSEAVCVPCGHVAGCISCLKEIENKKMGCPVCRAN 366
Query: 852 IVEVIRAYSI 861
I +VI+ Y +
Sbjct: 367 IDQVIKLYHV 376
>sp|Q8LA32|LUL4_ARATH Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana
GN=LUL4 PE=2 SV=1
Length = 359
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Query: 789 QGMVAMTSEDGSKWAHVRKGTCCVCCDSHI-DSLLYRCGHMCTCSKCANELVRGGGKCPL 847
QG + E GS GT CV C + D+ + C H+C CS CA EL KCP+
Sbjct: 287 QGAASGLDESGS-------GTECVICMTEAKDTAVLPCRHLCMCSDCAKELRLQSNKCPI 339
Query: 848 CRAPIVEVI 856
CR PI E++
Sbjct: 340 CRQPIEELL 348
>sp|Q6ZQM0|RFFL_MOUSE E3 ubiquitin-protein ligase rififylin OS=Mus musculus GN=Rffl PE=1
SV=1
Length = 377
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 799 GSKWAHVRKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRA 858
G+ + + + C +C DS ID +L CGHM TC+KC + +CP+CR ++ +
Sbjct: 319 GAVPSGLEENLCKICMDSPIDCVLLECGHMVTCTKCGKRM----NECPICRQYVIRAVHV 374
Query: 859 Y 859
+
Sbjct: 375 F 375
>sp|Q8WZ73|RFFL_HUMAN E3 ubiquitin-protein ligase rififylin OS=Homo sapiens GN=RFFL PE=1
SV=1
Length = 363
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 799 GSKWAHVRKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRA 858
G+ + + + C +C DS ID +L CGHM TC+KC + +CP+CR ++ +
Sbjct: 305 GAVPSGLEENLCKICMDSPIDCVLLECGHMVTCTKCGKRM----NECPICRQYVIRAVHV 360
Query: 859 Y 859
+
Sbjct: 361 F 361
>sp|Q8CIN9|RFFL_RAT E3 ubiquitin-protein ligase rififylin OS=Rattus norvegicus GN=Rffl
PE=1 SV=1
Length = 362
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 799 GSKWAHVRKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRA 858
G+ + + + C +C DS ID +L CGHM TC+KC + +CP+CR ++ +
Sbjct: 304 GAVPSGLEENLCKICMDSPIDCVLLECGHMVTCTKCGKRM----NECPICRQYVIRAVHV 359
Query: 859 Y 859
+
Sbjct: 360 F 360
>sp|O60291|MGRN1_HUMAN E3 ubiquitin-protein ligase MGRN1 OS=Homo sapiens GN=MGRN1 PE=1
SV=2
Length = 552
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 810 CCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPI 852
C VC D+L+ C H+C C+ CA+ L CP+CR P
Sbjct: 278 CVVCLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPICRLPF 320
>sp|Q5XIQ4|MGRN1_RAT E3 ubiquitin-protein ligase MGRN1 OS=Rattus norvegicus GN=Mgrn1
PE=2 SV=1
Length = 533
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 810 CCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPI 852
C VC D+L+ C H+C C+ CA+ L CP+CR P
Sbjct: 279 CVVCLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPICRLPF 321
>sp|Q9D074|MGRN1_MOUSE E3 ubiquitin-protein ligase MGRN1 OS=Mus musculus GN=Mgrn1 PE=1
SV=2
Length = 532
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 810 CCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPI 852
C VC D+L+ C H+C C+ CA+ L CP+CR P
Sbjct: 278 CVVCLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPICRLPF 320
>sp|Q4R7G8|MUL1_MACFA Mitochondrial ubiquitin ligase activator of NFKB 1 OS=Macaca
fascicularis GN=MUL1 PE=2 SV=1
Length = 352
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 807 KGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYS 860
K C VC S + CGH+C+C++C L KCP+CR I VI Y+
Sbjct: 299 KSACVVCLSSFKSCVFLECGHVCSCTECYRALPE-PKKCPICRQAITRVIPLYN 351
>sp|Q7ZUL9|MGRN1_DANRE Probable E3 ubiquitin-protein ligase MGRN1 OS=Danio rerio GN=mgrn1
PE=2 SV=1
Length = 529
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 810 CCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPI 852
C VC D+L+ C H+C C+ CA+ L CP+CR P
Sbjct: 276 CVVCLSDLRDTLILPCRHLCLCNACADTLRYQANNCPICRLPF 318
>sp|Q969V5|MUL1_HUMAN Mitochondrial ubiquitin ligase activator of NFKB 1 OS=Homo sapiens
GN=MUL1 PE=1 SV=1
Length = 352
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 807 KGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAY 859
K C VC S + CGH+C+C++C L KCP+CR I VI Y
Sbjct: 299 KSACVVCLSSFKSCVFLECGHVCSCTECYRALPE-PKKCPICRQAITRVIPLY 350
>sp|Q6INH1|RN157_XENLA RING finger protein 157 OS=Xenopus laevis GN=rnf157 PE=2 SV=1
Length = 674
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 811 CVCCDSHI-DSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPI 852
CV C S + D+L+ C H+C C+ CA+ L CP+CR P
Sbjct: 277 CVVCLSDVRDTLILPCRHLCLCNACADTLRYQASNCPICRLPF 319
>sp|Q3TEL6|RN157_MOUSE RING finger protein 157 OS=Mus musculus GN=Rnf157 PE=2 SV=2
Length = 685
Score = 46.6 bits (109), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 811 CVCCDSHI-DSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPI 852
CV C S + D+L+ C H+C C+ CA+ L CP+CR P
Sbjct: 277 CVVCLSDVRDTLILPCRHLCLCNTCADTLRYQANNCPICRLPF 319
>sp|Q96PX1|RN157_HUMAN RING finger protein 157 OS=Homo sapiens GN=RNF157 PE=1 SV=3
Length = 679
Score = 46.6 bits (109), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 811 CVCCDSHI-DSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPI 852
CV C S + D+L+ C H+C C+ CA+ L CP+CR P
Sbjct: 277 CVVCLSDVRDTLILPCRHLCLCNTCADTLRYQANNCPICRLPF 319
>sp|A1L3F4|MEX3B_XENLA RNA-binding protein MEX3B OS=Xenopus laevis GN=mex3b PE=2 SV=1
Length = 507
Score = 46.6 bits (109), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 806 RKGT--CCVCCDSHIDSLLYRCGHMCTCSKCANELV-RGGGKCPLCRAPIVEVIRAYS 860
RKG+ C +C +S + + L CGH C +CAN + + +CP+C A + + IR +S
Sbjct: 450 RKGSRECSICFESEVIAALVPCGHNLFCMECANRICEKNQPQCPVCHAGVTQAIRIFS 507
>sp|Q69Z36|MEX3B_MOUSE RNA-binding protein MEX3B OS=Mus musculus GN=Mex3b PE=2 SV=2
Length = 601
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 806 RKGT--CCVCCDSHIDSLLYRCGHMCTCSKCANELV-RGGGKCPLCRAPIVEVIRAYS 860
RKG+ C VC +S + + L CGH C +CAN + + +CP+C + + IR +S
Sbjct: 544 RKGSRDCSVCFESEVIAALVPCGHNLFCMECANRICEKSEPECPVCHTAVTQAIRIFS 601
>sp|Q5E9J6|RNF34_BOVIN E3 ubiquitin-protein ligase RNF34 OS=Bos taurus GN=RNF34 PE=2 SV=1
Length = 375
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 812 VCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAY 859
+C D+ ID +L CGHM TC+KC + +CP+CR +V + +
Sbjct: 330 ICMDAVIDCVLLECGHMVTCTKCGKRM----SECPICRQYVVRAVHVF 373
>sp|Q5NVC7|RNF34_PONAB E3 ubiquitin-protein ligase RNF34 OS=Pongo abelii GN=RNF34 PE=2
SV=2
Length = 372
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 812 VCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAY 859
+C D+ ID +L CGHM TC+KC + +CP+CR +V + +
Sbjct: 327 ICMDAVIDCVLLECGHMVTCTKCGKRM----SECPICRQYVVRAVHVF 370
>sp|Q9LFH6|LUL2_ARATH Probable E3 ubiquitin-protein ligase LUL2 OS=Arabidopsis thaliana
GN=LUL2 PE=2 SV=1
Length = 299
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%)
Query: 792 VAMTSEDGSKWAHVRKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAP 851
+ T +D + A+ R C +C D+ + C HMC CS CA L CP+CR P
Sbjct: 225 IGNTVDDNGEDANERGKECVICLSEPRDTTVLPCRHMCMCSGCAKLLRFQTNLCPICRQP 284
Query: 852 I 852
+
Sbjct: 285 V 285
>sp|Q969K3|RNF34_HUMAN E3 ubiquitin-protein ligase RNF34 OS=Homo sapiens GN=RNF34 PE=1
SV=1
Length = 372
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 812 VCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAY 859
+C D+ ID +L CGHM TC+KC + +CP+CR +V + +
Sbjct: 327 ICMDAVIDCVLLECGHMVTCTKCGKRM----SECPICRQYVVRAVHVF 370
>sp|Q6AYH3|RNF34_RAT E3 ubiquitin-protein ligase RNF34 OS=Rattus norvegicus GN=Rnf34
PE=1 SV=1
Length = 381
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 812 VCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAY 859
+C D+ ID +L CGHM TC+KC + +CP+CR +V + +
Sbjct: 336 ICMDAVIDCVLLECGHMVTCTKCGKRM----SECPICRQYVVRAVHVF 379
>sp|Q99KR6|RNF34_MOUSE E3 ubiquitin-protein ligase RNF34 OS=Mus musculus GN=Rnf34 PE=1
SV=1
Length = 376
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 812 VCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAY 859
+C D+ ID +L CGHM TC+KC + +CP+CR +V + +
Sbjct: 331 ICMDAVIDCVLLECGHMVTCTKCGKRM----SECPICRQYVVRAVHVF 374
>sp|Q6ZN04|MEX3B_HUMAN RNA-binding protein MEX3B OS=Homo sapiens GN=MEX3B PE=1 SV=1
Length = 569
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 806 RKGT--CCVCCDSHIDSLLYRCGHMCTCSKCANELV-RGGGKCPLCRAPIVEVIRAYS 860
RKG+ C VC +S + + L CGH C +CAN + + +CP+C + + IR +S
Sbjct: 512 RKGSRDCSVCFESEVIAALVPCGHNLFCMECANRICEKSEPECPVCHTAVTQAIRIFS 569
>sp|Q8JHV9|BIR7A_XENLA Baculoviral IAP repeat-containing protein 7-A OS=Xenopus laevis
GN=birc7-a PE=1 SV=1
Length = 401
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 810 CCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAY 859
C VC D + L CGH+ C++CA L CP+CRA I +RA+
Sbjct: 354 CKVCMDKDVSMLFVPCGHLVVCTECAPNLRH----CPICRAAIRGSVRAF 399
>sp|A9ULZ2|BIR7B_XENLA Baculoviral IAP repeat-containing protein 7-B OS=Xenopus laevis
GN=birc7-b PE=2 SV=2
Length = 345
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 810 CCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAY 859
C VC D + L CGH+ C++CA L CP+CRA I +RA+
Sbjct: 298 CKVCMDKDVSMLFVPCGHLVVCTECAPNLRH----CPICRAAIRGSVRAF 343
>sp|Q9S752|LOFG2_ARATH Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana
GN=LOG2 PE=1 SV=1
Length = 388
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 810 CCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPI 852
C +C D+ + C HMC CS CA L +CP+CR P+
Sbjct: 319 CVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPV 361
>sp|Q90660|BIR_CHICK Inhibitor of apoptosis protein OS=Gallus gallus GN=ITA PE=2 SV=1
Length = 611
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 809 TCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAY 859
TC VC D + + CGH+ C +CA L KCP+CR I +R +
Sbjct: 563 TCKVCMDKEVSIVFIPCGHLVVCKECAPSL----RKCPICRGTIKGTVRTF 609
>sp|Q13490|BIRC2_HUMAN Baculoviral IAP repeat-containing protein 2 OS=Homo sapiens
GN=BIRC2 PE=1 SV=2
Length = 618
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 809 TCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAY 859
TC VC D + + CGH+ C +CA L KCP+CR I +R +
Sbjct: 570 TCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKGTVRTF 616
>sp|Q13489|BIRC3_HUMAN Baculoviral IAP repeat-containing protein 3 OS=Homo sapiens
GN=BIRC3 PE=1 SV=2
Length = 604
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 809 TCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAY 859
TC VC D + + CGH+ C CA L KCP+CR+ I +R +
Sbjct: 556 TCKVCMDKEVSIVFIPCGHLVVCKDCAPSL----RKCPICRSTIKGTVRTF 602
>sp|Q62210|BIRC2_MOUSE Baculoviral IAP repeat-containing protein 2 OS=Mus musculus
GN=Birc2 PE=1 SV=1
Length = 612
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 809 TCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAY 859
TC VC D + + CGH+ C +CA L KCP+CR I +R +
Sbjct: 564 TCKVCMDREVSIVFIPCGHLVVCQECAPSL----RKCPICRGTIKGTVRTF 610
>sp|Q96AX9|MIB2_HUMAN E3 ubiquitin-protein ligase MIB2 OS=Homo sapiens GN=MIB2 PE=1 SV=3
Length = 1013
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 6/51 (11%)
Query: 809 TCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAY 859
TC +C DSHI L+++CGH C+ C + L CP+CR PI + I+ +
Sbjct: 968 TCPICIDSHI-RLVFQCGHG-ACAPCGSAL----SACPICRQPIRDRIQIF 1012
>sp|Q96DX4|RSPRY_HUMAN RING finger and SPRY domain-containing protein 1 OS=Homo sapiens
GN=RSPRY1 PE=2 SV=1
Length = 576
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 801 KWAHVRKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYS 860
K +R+ C +CCD D+ L CGH C CA +L CPLCR IV IR S
Sbjct: 518 KQVSIRENCCSLCCDEVADTQLKPCGHSDLCMDCALQL----ETCPLCRKEIVSRIRQIS 573
>sp|Q5R881|RSPRY_PONAB RING finger and SPRY domain-containing protein 1 OS=Pongo abelii
GN=RSPRY1 PE=2 SV=1
Length = 576
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 801 KWAHVRKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYS 860
K +R+ C +CCD D+ L CGH C CA +L CPLCR IV IR S
Sbjct: 518 KQVSIRENCCSLCCDEVADTQLKPCGHSDLCMDCALQL----ETCPLCRKEIVSRIRQIS 573
>sp|Q8BVR6|RSPRY_MOUSE RING finger and SPRY domain-containing protein 1 OS=Mus musculus
GN=Rspry1 PE=2 SV=1
Length = 576
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 801 KWAHVRKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYS 860
K +R+ C +CCD D+ L CGH C CA +L CPLCR IV IR S
Sbjct: 518 KQVSIRENCCSLCCDEVADTQLKPCGHSDLCMDCALQL----ETCPLCRKEIVSRIRQIS 573
>sp|Q95LP3|RSPRY_MACFA RING finger and SPRY domain-containing protein 1 OS=Macaca
fascicularis GN=RSPRY1 PE=2 SV=1
Length = 576
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 801 KWAHVRKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYS 860
K +R+ C +CCD D+ L CGH C CA +L CPLCR IV IR S
Sbjct: 518 KQVSIRENCCSLCCDEVADTQLKPCGHSDLCMDCALQL----ETCPLCRKEIVSRIRQIS 573
>sp|Q9SU25|T2FA_ARATH Transcription initiation factor IIF subunit alpha OS=Arabidopsis
thaliana GN=RAP74 PE=1 SV=1
Length = 649
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 809 TCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYSI 861
T CV C S D C HM C KC + + KC C + +IR Y++
Sbjct: 9 TSCVGCGSQSDLYGSSCRHMTLCLKCGRTMAQNKSKCHECGTVVTRLIREYNV 61
>sp|Q24307|IAP2_DROME Apoptosis 2 inhibitor OS=Drosophila melanogaster GN=Iap2 PE=2 SV=3
Length = 498
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 810 CCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAY 859
C VC D + + CGH+ TC++CA + CP+CRA I +R +
Sbjct: 451 CKVCLDEEVGVVFLPCGHLATCNQCAPSV----ANCPMCRADIKGFVRTF 496
>sp|Q8R516|MIB2_MOUSE E3 ubiquitin-protein ligase MIB2 OS=Mus musculus GN=Mib2 PE=1 SV=2
Length = 973
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 7/103 (6%)
Query: 758 RMLEACMDMQLELQRSVRQEVSAALNRSAGEQGMVAMTSEDGSKWAHVR-KGTCCVCCDS 816
R ++ C+ Q+ + + +R + S +N + E S++ + + TC +C DS
Sbjct: 876 RRMKKCIRCQVVISKKLRPDGSEVVNAIQVPGPPRQLVEELQSRYRQMEERITCPICIDS 935
Query: 817 HIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAY 859
HI L+++CGH C+ C L CP+CR PI + I+ +
Sbjct: 936 HI-RLVFQCGHG-ACAPCGAAL----NACPICRQPIRDRIQIF 972
>sp|Q5U5Q3|MEX3C_HUMAN RNA-binding E3 ubiquitin-protein ligase MEX3C OS=Homo sapiens
GN=MEX3C PE=1 SV=3
Length = 659
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELV-RGGGKCPLCRAPIVEVIRAYS 860
RK C +C ++ + + L CGH C +CAN++ + CP+C+ + + I+ +S
Sbjct: 604 RKHDCVICFENEVIAALVPCGHNLFCMECANKICEKRTPSCPVCQTAVTQAIQIHS 659
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 327,108,909
Number of Sequences: 539616
Number of extensions: 14433826
Number of successful extensions: 56314
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 662
Number of HSP's that attempted gapping in prelim test: 53745
Number of HSP's gapped (non-prelim): 2802
length of query: 862
length of database: 191,569,459
effective HSP length: 126
effective length of query: 736
effective length of database: 123,577,843
effective search space: 90953292448
effective search space used: 90953292448
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 66 (30.0 bits)