Query 002964
Match_columns 862
No_of_seqs 278 out of 1289
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 14:19:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002964.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002964hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4172 Predicted E3 ubiquitin 99.3 6.4E-14 1.4E-18 116.4 -1.7 53 808-860 8-61 (62)
2 PF13920 zf-C3HC4_3: Zinc fing 99.1 3.4E-11 7.4E-16 97.4 3.7 49 807-855 2-50 (50)
3 KOG4265 Predicted E3 ubiquitin 99.0 6.5E-11 1.4E-15 129.1 2.6 54 807-860 290-343 (349)
4 KOG4275 Predicted E3 ubiquitin 99.0 8E-11 1.7E-15 125.3 0.2 51 807-861 300-350 (350)
5 KOG1571 Predicted E3 ubiquitin 98.8 2.2E-09 4.7E-14 117.5 3.8 54 803-860 301-354 (355)
6 PLN03208 E3 ubiquitin-protein 98.4 2.3E-07 5.1E-12 95.2 4.8 53 806-859 17-87 (193)
7 KOG0823 Predicted E3 ubiquitin 98.4 2.2E-07 4.7E-12 97.2 3.7 54 806-860 46-104 (230)
8 KOG0320 Predicted E3 ubiquitin 98.4 2.1E-07 4.6E-12 94.1 3.0 53 806-859 130-186 (187)
9 KOG0317 Predicted E3 ubiquitin 98.3 2.5E-07 5.5E-12 99.2 2.8 48 806-854 238-285 (293)
10 PHA02929 N1R/p28-like protein; 98.3 5.3E-07 1.1E-11 95.4 4.6 53 807-860 174-234 (238)
11 PF13923 zf-C3HC4_2: Zinc fing 98.3 6E-07 1.3E-11 69.4 2.9 38 810-848 1-39 (39)
12 PF13639 zf-RING_2: Ring finge 98.2 6.4E-07 1.4E-11 70.7 2.1 40 809-849 2-44 (44)
13 KOG0978 E3 ubiquitin ligase in 98.1 3E-06 6.4E-11 100.4 6.3 53 806-859 642-697 (698)
14 KOG1100 Predicted E3 ubiquitin 98.0 5.1E-06 1.1E-10 86.4 4.8 50 806-859 157-206 (207)
15 cd00162 RING RING-finger (Real 98.0 6.1E-06 1.3E-10 62.6 3.3 43 809-852 1-45 (45)
16 KOG2164 Predicted E3 ubiquitin 98.0 4.2E-06 9E-11 95.6 3.2 52 807-859 186-244 (513)
17 PHA02926 zinc finger-like prot 97.9 4.9E-06 1.1E-10 87.0 2.8 52 805-857 168-234 (242)
18 smart00504 Ubox Modified RING 97.9 9.1E-06 2E-10 67.7 3.7 46 808-854 2-47 (63)
19 PF00097 zf-C3HC4: Zinc finger 97.9 8.8E-06 1.9E-10 62.9 3.0 38 810-848 1-41 (41)
20 smart00184 RING Ring finger. E 97.9 1.1E-05 2.3E-10 59.2 3.2 38 810-848 1-39 (39)
21 PF15227 zf-C3HC4_4: zinc fing 97.9 1.2E-05 2.5E-10 64.0 3.3 38 810-848 1-42 (42)
22 TIGR00599 rad18 DNA repair pro 97.9 7.6E-06 1.6E-10 92.2 2.9 48 806-854 25-72 (397)
23 PF14634 zf-RING_5: zinc-RING 97.8 1.5E-05 3.2E-10 63.4 3.0 41 809-850 1-44 (44)
24 KOG1785 Tyrosine kinase negati 97.8 8.2E-06 1.8E-10 90.7 1.6 48 808-856 370-419 (563)
25 COG5243 HRD1 HRD ubiquitin lig 97.7 6.7E-05 1.5E-09 83.2 7.7 47 806-853 286-345 (491)
26 COG5574 PEX10 RING-finger-cont 97.7 1.8E-05 3.8E-10 84.5 2.1 46 807-853 215-262 (271)
27 KOG4692 Predicted E3 ubiquitin 97.7 1.8E-05 3.8E-10 87.1 2.1 50 806-856 421-470 (489)
28 KOG0287 Postreplication repair 97.5 3.4E-05 7.4E-10 84.6 1.6 48 806-854 22-69 (442)
29 COG5432 RAD18 RING-finger-cont 97.5 5.6E-05 1.2E-09 81.6 2.3 50 804-854 22-71 (391)
30 KOG2177 Predicted E3 ubiquitin 97.4 5.9E-05 1.3E-09 75.7 1.5 44 806-850 12-55 (386)
31 KOG0824 Predicted E3 ubiquitin 97.4 6.3E-05 1.4E-09 81.6 1.6 50 806-856 6-56 (324)
32 PF13445 zf-RING_UBOX: RING-ty 97.4 9.2E-05 2E-09 59.5 2.1 30 810-841 1-34 (43)
33 PF12678 zf-rbx1: RING-H2 zinc 97.4 0.00016 3.4E-09 63.7 3.6 42 807-849 19-73 (73)
34 COG5540 RING-finger-containing 97.3 0.00012 2.7E-09 79.4 2.8 45 808-853 324-372 (374)
35 PF04564 U-box: U-box domain; 97.2 0.00039 8.4E-09 61.0 3.8 48 806-854 3-51 (73)
36 KOG0802 E3 ubiquitin ligase [P 97.0 0.00026 5.7E-09 82.8 1.6 46 806-852 290-340 (543)
37 KOG4628 Predicted E3 ubiquitin 96.9 0.00048 1E-08 76.7 2.4 46 808-854 230-279 (348)
38 COG5236 Uncharacterized conser 96.9 0.00062 1.4E-08 75.1 3.2 51 806-857 60-112 (493)
39 KOG0311 Predicted E3 ubiquitin 96.5 0.00037 8E-09 77.2 -1.8 47 807-854 43-91 (381)
40 KOG1039 Predicted E3 ubiquitin 96.5 0.0012 2.5E-08 73.8 1.8 51 806-857 160-225 (344)
41 KOG4159 Predicted E3 ubiquitin 96.4 0.0015 3.3E-08 74.1 2.3 49 805-854 82-130 (398)
42 PF14447 Prok-RING_4: Prokaryo 96.1 0.0023 4.9E-08 54.3 0.9 45 807-854 7-51 (55)
43 COG5152 Uncharacterized conser 95.6 0.0048 1E-07 64.1 1.2 48 807-855 196-243 (259)
44 KOG1813 Predicted E3 ubiquitin 95.5 0.005 1.1E-07 67.2 1.0 49 807-856 241-289 (313)
45 KOG2879 Predicted E3 ubiquitin 95.5 0.011 2.5E-07 64.0 3.6 49 805-854 237-288 (298)
46 TIGR00570 cdk7 CDK-activating 95.4 0.011 2.4E-07 65.2 3.4 30 824-854 25-55 (309)
47 PF14835 zf-RING_6: zf-RING of 95.3 0.0054 1.2E-07 53.6 0.4 44 807-853 7-51 (65)
48 PF12861 zf-Apc11: Anaphase-pr 95.1 0.019 4.2E-07 52.7 3.3 33 820-853 47-82 (85)
49 KOG0828 Predicted E3 ubiquitin 95.0 0.0089 1.9E-07 68.8 1.2 48 806-854 570-635 (636)
50 KOG0825 PHD Zn-finger protein 94.8 0.008 1.7E-07 72.1 -0.1 50 807-857 123-175 (1134)
51 KOG2660 Locus-specific chromos 94.5 0.0096 2.1E-07 65.8 -0.2 52 807-859 15-67 (331)
52 PF14570 zf-RING_4: RING/Ubox 93.6 0.044 9.6E-07 45.5 2.0 42 810-852 1-47 (48)
53 KOG1001 Helicase-like transcri 93.5 0.03 6.4E-07 67.7 1.2 45 808-854 455-501 (674)
54 KOG3039 Uncharacterized conser 93.4 0.056 1.2E-06 58.1 3.0 48 806-854 220-271 (303)
55 PF10367 Vps39_2: Vacuolar sor 93.3 0.33 7.3E-06 44.1 7.6 29 807-836 78-108 (109)
56 KOG2932 E3 ubiquitin ligase in 93.2 0.024 5.2E-07 62.4 -0.1 44 810-856 92-137 (389)
57 PF07800 DUF1644: Protein of u 92.9 0.1 2.2E-06 52.9 3.8 51 808-858 3-96 (162)
58 PF04641 Rtf2: Rtf2 RING-finge 92.8 0.076 1.6E-06 57.1 3.0 47 806-854 112-162 (260)
59 KOG0297 TNF receptor-associate 92.5 0.054 1.2E-06 61.6 1.5 49 806-855 20-69 (391)
60 KOG0826 Predicted E3 ubiquitin 92.4 0.049 1.1E-06 60.5 0.8 55 805-860 298-355 (357)
61 KOG1814 Predicted E3 ubiquitin 92.4 0.062 1.3E-06 61.1 1.6 43 807-850 184-237 (445)
62 KOG1002 Nucleotide excision re 90.4 0.096 2.1E-06 61.1 0.7 46 806-852 535-585 (791)
63 KOG3842 Adaptor protein Pellin 90.2 0.16 3.5E-06 56.3 2.1 46 807-854 341-415 (429)
64 KOG3002 Zn finger protein [Gen 90.0 0.17 3.8E-06 55.9 2.2 45 805-854 46-92 (299)
65 KOG0804 Cytoplasmic Zn-finger 89.7 0.16 3.4E-06 58.5 1.6 47 803-852 171-221 (493)
66 smart00744 RINGv The RING-vari 88.5 0.39 8.6E-06 39.6 2.7 40 809-849 1-49 (49)
67 KOG1428 Inhibitor of type V ad 88.4 0.22 4.9E-06 63.3 1.7 50 805-855 3484-3546(3738)
68 KOG1734 Predicted RING-contain 87.9 0.26 5.6E-06 53.8 1.6 50 803-853 220-281 (328)
69 KOG2113 Predicted RNA binding 87.7 0.53 1.2E-05 52.3 3.9 53 804-858 340-392 (394)
70 COG5219 Uncharacterized conser 87.3 0.28 6E-06 60.7 1.6 47 807-854 1469-1524(1525)
71 COG5220 TFB3 Cdk activating ki 87.2 0.22 4.7E-06 53.6 0.6 45 806-851 9-62 (314)
72 PF03854 zf-P11: P-11 zinc fin 87.0 0.36 7.7E-06 40.3 1.6 46 808-856 3-49 (50)
73 PF04710 Pellino: Pellino; In 85.7 0.24 5.3E-06 56.4 0.0 52 807-859 328-410 (416)
74 COG5222 Uncharacterized conser 85.2 0.43 9.4E-06 52.7 1.6 42 808-850 275-318 (427)
75 KOG2034 Vacuolar sorting prote 84.9 2.6 5.7E-05 52.3 8.1 30 354-383 374-403 (911)
76 PF05290 Baculo_IE-1: Baculovi 84.9 0.58 1.3E-05 46.5 2.1 47 808-855 81-134 (140)
77 KOG3799 Rab3 effector RIM1 and 84.7 2.5 5.4E-05 42.3 6.3 43 806-852 64-117 (169)
78 KOG2113 Predicted RNA binding 84.5 0.27 5.8E-06 54.6 -0.4 53 806-858 135-188 (394)
79 COG5175 MOT2 Transcriptional r 83.6 0.71 1.5E-05 51.8 2.4 47 807-854 14-65 (480)
80 PF11789 zf-Nse: Zinc-finger o 81.6 1.3 2.8E-05 37.9 2.7 41 806-847 10-53 (57)
81 PF11793 FANCL_C: FANCL C-term 81.0 0.4 8.6E-06 42.3 -0.6 45 808-853 3-66 (70)
82 PF10272 Tmpp129: Putative tra 79.6 1.7 3.6E-05 49.5 3.5 48 806-853 270-351 (358)
83 COG5194 APC11 Component of SCF 78.9 1.9 4E-05 39.8 2.9 44 808-852 32-80 (88)
84 KOG4445 Uncharacterized conser 77.1 0.8 1.7E-05 50.8 0.2 47 807-854 115-187 (368)
85 KOG4185 Predicted E3 ubiquitin 73.7 2 4.2E-05 46.6 2.0 31 821-852 23-54 (296)
86 KOG4362 Transcriptional regula 73.3 1.4 3E-05 53.5 0.9 46 808-854 22-70 (684)
87 KOG2068 MOT2 transcription fac 72.9 2.1 4.5E-05 48.1 2.0 49 807-856 249-301 (327)
88 KOG1940 Zn-finger protein [Gen 71.1 1.3 2.8E-05 48.8 -0.1 51 808-860 159-213 (276)
89 PF05883 Baculo_RING: Baculovi 70.6 2.3 4.9E-05 42.4 1.5 33 807-840 26-67 (134)
90 PHA03096 p28-like protein; Pro 68.8 8 0.00017 42.9 5.4 31 809-840 180-218 (284)
91 PF04216 FdhE: Protein involve 67.6 1.5 3.2E-05 47.9 -0.6 53 806-859 171-228 (290)
92 KOG2675 Adenylate cyclase-asso 67.1 9.6 0.00021 44.5 5.7 56 644-716 195-250 (480)
93 KOG2114 Vacuolar assembly/sort 66.4 9 0.0002 47.8 5.5 45 808-856 841-886 (933)
94 KOG3579 Predicted E3 ubiquitin 66.0 3.4 7.4E-05 45.7 1.8 46 806-852 267-327 (352)
95 KOG0825 PHD Zn-finger protein 63.7 3.4 7.3E-05 50.9 1.3 52 803-855 95-156 (1134)
96 KOG0298 DEAD box-containing he 63.0 2.1 4.5E-05 55.0 -0.6 46 807-853 1153-1199(1394)
97 KOG3161 Predicted E3 ubiquitin 61.1 2.8 6E-05 50.6 0.1 38 806-846 10-51 (861)
98 KOG2817 Predicted E3 ubiquitin 58.9 7 0.00015 45.0 2.7 45 807-852 334-384 (394)
99 KOG1941 Acetylcholine receptor 58.7 18 0.00038 41.9 5.7 46 807-853 365-416 (518)
100 KOG2930 SCF ubiquitin ligase, 55.9 6.8 0.00015 37.8 1.6 30 821-851 77-106 (114)
101 TIGR01562 FdhE formate dehydro 52.7 4.7 0.0001 45.1 0.1 46 806-851 183-233 (305)
102 PRK03564 formate dehydrogenase 48.4 8.8 0.00019 43.1 1.3 45 806-850 186-234 (309)
103 KOG1493 Anaphase-promoting com 48.2 6.2 0.00013 36.2 0.1 29 823-852 49-80 (84)
104 KOG0827 Predicted E3 ubiquitin 45.6 15 0.00033 42.4 2.7 103 735-854 140-246 (465)
105 KOG0956 PHD finger protein AF1 41.6 15 0.00033 45.0 2.0 46 806-851 4-71 (900)
106 KOG4185 Predicted E3 ubiquitin 40.1 29 0.00063 37.7 3.7 45 806-851 206-265 (296)
107 PF10146 zf-C4H2: Zinc finger- 39.9 17 0.00037 39.2 1.9 27 827-853 193-219 (230)
108 COG5183 SSM4 Protein involved 39.1 22 0.00048 44.4 2.8 47 807-853 12-66 (1175)
109 PLN02189 cellulose synthase 36.9 23 0.0005 45.4 2.6 50 805-854 32-88 (1040)
110 PF02891 zf-MIZ: MIZ/SP-RING z 36.6 38 0.00082 28.2 3.0 43 808-851 3-50 (50)
111 PHA02862 5L protein; Provision 35.6 33 0.00071 35.1 2.9 45 808-853 3-53 (156)
112 PF13240 zinc_ribbon_2: zinc-r 34.8 7.9 0.00017 27.6 -1.1 23 830-852 1-23 (23)
113 KOG1812 Predicted E3 ubiquitin 32.0 17 0.00037 41.8 0.4 34 806-840 145-182 (384)
114 PF10235 Cript: Microtubule-as 32.0 20 0.00044 33.7 0.8 37 808-854 45-81 (90)
115 KOG0006 E3 ubiquitin-protein l 31.0 30 0.00065 39.2 2.0 33 806-839 220-254 (446)
116 KOG0827 Predicted E3 ubiquitin 31.0 35 0.00075 39.7 2.5 27 824-851 25-54 (465)
117 KOG2066 Vacuolar assembly/sort 30.8 84 0.0018 39.5 5.8 43 807-851 784-833 (846)
118 KOG4451 Uncharacterized conser 30.6 27 0.00058 38.0 1.5 25 829-853 250-274 (286)
119 PF10083 DUF2321: Uncharacteri 30.4 25 0.00054 36.2 1.2 24 829-855 29-52 (158)
120 KOG4218 Nuclear hormone recept 28.4 30 0.00065 39.6 1.5 26 807-836 15-40 (475)
121 KOG3113 Uncharacterized conser 28.3 64 0.0014 35.7 3.8 45 807-854 111-159 (293)
122 COG4306 Uncharacterized protei 27.4 32 0.00069 34.4 1.3 42 811-855 8-52 (160)
123 KOG1815 Predicted E3 ubiquitin 27.1 32 0.00069 40.1 1.4 33 806-839 69-102 (444)
124 KOG0269 WD40 repeat-containing 26.9 50 0.0011 41.2 3.0 45 807-852 779-827 (839)
125 PF02318 FYVE_2: FYVE-type zin 26.6 2.1E+02 0.0047 27.5 6.7 45 806-851 53-103 (118)
126 PHA02825 LAP/PHD finger-like p 26.1 61 0.0013 33.6 3.0 47 806-853 7-59 (162)
127 KOG3899 Uncharacterized conser 24.3 39 0.00083 38.0 1.4 28 825-853 325-365 (381)
128 KOG3970 Predicted E3 ubiquitin 23.4 55 0.0012 35.7 2.2 46 807-853 50-105 (299)
129 COG1579 Zn-ribbon protein, pos 23.4 63 0.0014 35.3 2.8 8 843-850 222-229 (239)
130 KOG1705 Uncharacterized conser 22.2 24 0.00053 33.5 -0.5 44 807-859 27-70 (110)
131 KOG2807 RNA polymerase II tran 22.1 46 0.001 37.9 1.5 44 807-851 330-376 (378)
132 PF14569 zf-UDP: Zinc-binding 21.5 88 0.0019 29.0 2.8 50 805-854 7-63 (80)
133 KOG3039 Uncharacterized conser 21.1 59 0.0013 35.9 1.9 32 807-839 43-74 (303)
134 COG1592 Rubrerythrin [Energy p 20.6 37 0.0008 35.2 0.3 17 840-856 147-163 (166)
135 PF08746 zf-RING-like: RING-li 20.3 1E+02 0.0022 25.0 2.7 38 810-848 1-43 (43)
No 1
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=6.4e-14 Score=116.36 Aligned_cols=53 Identities=47% Similarity=1.144 Sum_probs=50.0
Q ss_pred cccccccccccCeEEeCCCCccccHHhHHHHhc-CCCCCccccccccceeeeee
Q 002964 808 GTCCVCCDSHIDSLLYRCGHMCTCSKCANELVR-GGGKCPLCRAPIVEVIRAYS 860 (862)
Q Consensus 808 ~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~-~~~~CPiCRa~I~~vIriy~ 860 (862)
.+|.||++.+.+.+++-|||||+|+.|+..++. ..+.||+||++|..+|+.|.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~ 61 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYR 61 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhc
Confidence 689999999999999999999999999999987 56789999999999999985
No 2
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.13 E-value=3.4e-11 Score=97.42 Aligned_cols=49 Identities=41% Similarity=1.050 Sum_probs=44.0
Q ss_pred ccccccccccccCeEEeCCCCccccHHhHHHHhcCCCCCccccccccce
Q 002964 807 KGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEV 855 (862)
Q Consensus 807 ~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~v 855 (862)
+..|.||++...+++++||||+++|..|+..+.....+||+||++|.+|
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 4689999999999999999999999999999988888999999999865
No 3
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=6.5e-11 Score=129.14 Aligned_cols=54 Identities=35% Similarity=0.912 Sum_probs=50.9
Q ss_pred ccccccccccccCeEEeCCCCccccHHhHHHHhcCCCCCccccccccceeeeee
Q 002964 807 KGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYS 860 (862)
Q Consensus 807 ~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~vIriy~ 860 (862)
...|+||+...++++++||.|+|+|..|++.|......|||||.+|..++.+|.
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~ 343 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYV 343 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheecc
Confidence 468999999999999999999999999999999888899999999999998875
No 4
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=8e-11 Score=125.32 Aligned_cols=51 Identities=39% Similarity=1.048 Sum_probs=49.2
Q ss_pred ccccccccccccCeEEeCCCCccccHHhHHHHhcCCCCCccccccccceeeeeec
Q 002964 807 KGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYSI 861 (862)
Q Consensus 807 ~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~vIriy~V 861 (862)
..+|.||||.+++++|++|||++.|+.|.+.|. .|||||+.|.+++++|++
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~----eCPICRqyi~rvvrif~~ 350 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMN----ECPICRQYIVRVVRIFRV 350 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccccc----cCchHHHHHHHHHhhhcC
Confidence 579999999999999999999999999999998 999999999999999986
No 5
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.2e-09 Score=117.50 Aligned_cols=54 Identities=33% Similarity=0.845 Sum_probs=49.6
Q ss_pred ccccccccccccccccCeEEeCCCCccccHHhHHHHhcCCCCCccccccccceeeeee
Q 002964 803 AHVRKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYS 860 (862)
Q Consensus 803 ~~~~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~vIriy~ 860 (862)
.......|+||.+++.+++|+||||+|+|..|+..+. +||+||..|..++++|+
T Consensus 301 ~~~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~----~CPvCR~rI~~~~k~y~ 354 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLP----QCPVCRQRIRLVRKRYR 354 (355)
T ss_pred ccCCCCceEEecCCccceeeecCCcEEEchHHHhhCC----CCchhHHHHHHHHHHhc
Confidence 3345689999999999999999999999999999998 79999999999999985
No 6
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.41 E-value=2.3e-07 Score=95.16 Aligned_cols=53 Identities=28% Similarity=0.733 Sum_probs=44.5
Q ss_pred cccccccccccccCeEEeCCCCccccHHhHHHHhc----------------CCCCCccccccccc--eeeee
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVR----------------GGGKCPLCRAPIVE--VIRAY 859 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~----------------~~~~CPiCRa~I~~--vIriy 859 (862)
....|.||++...+.++++|||. ||..|+..|.. ....||+||.+|.. ++.+|
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 46899999999999999999999 99999998753 13579999999965 56655
No 7
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=2.2e-07 Score=97.18 Aligned_cols=54 Identities=28% Similarity=0.704 Sum_probs=46.5
Q ss_pred cccccccccccccCeEEeCCCCccccHHhHHHHhcC---CCCCcccccccc--ceeeeee
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRG---GGKCPLCRAPIV--EVIRAYS 860 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~---~~~CPiCRa~I~--~vIriy~ 860 (862)
....|-||+|...+.++..|||+ ||..|+-+|... ...||+|++.|. +||.+|-
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CceeeeeeccccCCCEEeecccc-eehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 46799999999999999999999 999999999753 456899998875 5788873
No 8
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2.1e-07 Score=94.08 Aligned_cols=53 Identities=34% Similarity=0.812 Sum_probs=43.9
Q ss_pred cccccccccccccCeE--EeCCCCccccHHhHHHHhcCCCCCccccccccc--eeeee
Q 002964 806 RKGTCCVCCDSHIDSL--LYRCGHMCTCSKCANELVRGGGKCPLCRAPIVE--VIRAY 859 (862)
Q Consensus 806 ~~~~C~ICld~~~d~v--llPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~--vIriy 859 (862)
....|+|||+.....+ -..|||+ ||..|++.......+||+|+++|+. +.+||
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALKNTNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred cccCCCceecchhhccccccccchh-HHHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence 4578999998765543 3689999 9999999999999999999998875 55665
No 9
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=2.5e-07 Score=99.20 Aligned_cols=48 Identities=27% Similarity=0.705 Sum_probs=44.2
Q ss_pred cccccccccccccCeEEeCCCCccccHHhHHHHhcCCCCCccccccccc
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVE 854 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~ 854 (862)
....|.+|+++..+....||||. ||..|+..|+.....||+||.+...
T Consensus 238 a~~kC~LCLe~~~~pSaTpCGHi-FCWsCI~~w~~ek~eCPlCR~~~~p 285 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNPSATPCGHI-FCWSCILEWCSEKAECPLCREKFQP 285 (293)
T ss_pred CCCceEEEecCCCCCCcCcCcch-HHHHHHHHHHccccCCCcccccCCC
Confidence 35799999999999999999999 9999999999888899999998764
No 10
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.30 E-value=5.3e-07 Score=95.38 Aligned_cols=53 Identities=28% Similarity=0.810 Sum_probs=44.5
Q ss_pred ccccccccccccC--------eEEeCCCCccccHHhHHHHhcCCCCCccccccccceeeeee
Q 002964 807 KGTCCVCCDSHID--------SLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYS 860 (862)
Q Consensus 807 ~~~C~ICld~~~d--------~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~vIriy~ 860 (862)
...|+||++...+ +++.+|||. ||..|...|......||+||.++..+++...
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~r~ 234 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKEKNTCPVCRTPFISVIKSRF 234 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHhcCCCCCCCCCEeeEEeeeee
Confidence 4689999986433 356789998 9999999999888899999999998887643
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.26 E-value=6e-07 Score=69.41 Aligned_cols=38 Identities=34% Similarity=0.961 Sum_probs=33.6
Q ss_pred cccccccccCe-EEeCCCCccccHHhHHHHhcCCCCCccc
Q 002964 810 CCVCCDSHIDS-LLYRCGHMCTCSKCANELVRGGGKCPLC 848 (862)
Q Consensus 810 C~ICld~~~d~-vllPCGH~c~C~~Ca~~L~~~~~~CPiC 848 (862)
|.||++...+. ++++|||. ||..|+.++.....+||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHCcCCCcCC
Confidence 89999999999 68999999 9999999998778899998
No 12
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.20 E-value=6.4e-07 Score=70.67 Aligned_cols=40 Identities=28% Similarity=0.815 Sum_probs=34.7
Q ss_pred ccccccccc---cCeEEeCCCCccccHHhHHHHhcCCCCCcccc
Q 002964 809 TCCVCCDSH---IDSLLYRCGHMCTCSKCANELVRGGGKCPLCR 849 (862)
Q Consensus 809 ~C~ICld~~---~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCR 849 (862)
.|.||++.. ..++.++|||. ||..|+..+.....+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHhCCcCCccC
Confidence 699999865 46688899999 99999999998888999997
No 13
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=3e-06 Score=100.37 Aligned_cols=53 Identities=30% Similarity=0.659 Sum_probs=45.0
Q ss_pred cccccccccccccCeEEeCCCCccccHHhHHHHhc-CCCCCccccccccc--eeeee
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVR-GGGKCPLCRAPIVE--VIRAY 859 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~-~~~~CPiCRa~I~~--vIriy 859 (862)
....|++|.+++.++++..|||+ ||+.|...... ...+||.|.+++.. |.+||
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~-FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHV-FCEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred hceeCCCccCchhhHHHHhcchH-HHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 35789999999999999999999 99999998764 45699999998864 55555
No 14
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=5.1e-06 Score=86.41 Aligned_cols=50 Identities=32% Similarity=0.844 Sum_probs=44.7
Q ss_pred cccccccccccccCeEEeCCCCccccHHhHHHHhcCCCCCccccccccceeeee
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAY 859 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~vIriy 859 (862)
....|.+|..+...++++||.|+|+|..|...+. .||+|+.++...+.+|
T Consensus 157 ~~~~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~----~CPiC~~~~~s~~~v~ 206 (207)
T KOG1100|consen 157 RMRSCRKCGEREATVLLLPCRHLCLCGICDESLR----ICPICRSPKTSSVEVN 206 (207)
T ss_pred ccccceecCcCCceEEeecccceEecccccccCc----cCCCCcChhhceeecc
Confidence 3444999999999999999999999999998754 8999999999988876
No 15
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.97 E-value=6.1e-06 Score=62.61 Aligned_cols=43 Identities=35% Similarity=1.037 Sum_probs=35.0
Q ss_pred ccccccccccCeE-EeCCCCccccHHhHHHHhcC-CCCCccccccc
Q 002964 809 TCCVCCDSHIDSL-LYRCGHMCTCSKCANELVRG-GGKCPLCRAPI 852 (862)
Q Consensus 809 ~C~ICld~~~d~v-llPCGH~c~C~~Ca~~L~~~-~~~CPiCRa~I 852 (862)
.|.||++.....+ +.+|||. ||..|...+... ...||+|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999885444 4459999 999999998875 67899999864
No 16
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=4.2e-06 Score=95.60 Aligned_cols=52 Identities=23% Similarity=0.634 Sum_probs=44.7
Q ss_pred ccccccccccccCeEEeCCCCccccHHhHHHHhcC-----CCCCccccccccc--eeeee
Q 002964 807 KGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRG-----GGKCPLCRAPIVE--VIRAY 859 (862)
Q Consensus 807 ~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~-----~~~CPiCRa~I~~--vIriy 859 (862)
...|+||+..+..++.+.|||. ||..|+..++.. .+.||+|+..|.- +..+|
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~ 244 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF 244 (513)
T ss_pred CCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence 5789999999999999999999 999999998754 3689999999876 55554
No 17
>PHA02926 zinc finger-like protein; Provisional
Probab=97.93 E-value=4.9e-06 Score=87.03 Aligned_cols=52 Identities=27% Similarity=0.669 Sum_probs=40.7
Q ss_pred cccccccccccccc---------CeEEeCCCCccccHHhHHHHhcCC------CCCccccccccceee
Q 002964 805 VRKGTCCVCCDSHI---------DSLLYRCGHMCTCSKCANELVRGG------GKCPLCRAPIVEVIR 857 (862)
Q Consensus 805 ~~~~~C~ICld~~~---------d~vllPCGH~c~C~~Ca~~L~~~~------~~CPiCRa~I~~vIr 857 (862)
..+..|.||++... -.++.+|+|. ||..|...|.... ..||+||..+..++.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRNITM 234 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence 34579999998631 2477799999 9999999998632 359999999887654
No 18
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=97.92 E-value=9.1e-06 Score=67.68 Aligned_cols=46 Identities=13% Similarity=0.272 Sum_probs=41.8
Q ss_pred cccccccccccCeEEeCCCCccccHHhHHHHhcCCCCCccccccccc
Q 002964 808 GTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVE 854 (862)
Q Consensus 808 ~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~ 854 (862)
..|.||.+...+.+++||||. ||..|...+....+.||+|+.++..
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQT-YERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCE-EeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 479999999999999999999 9999999998778899999998843
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.89 E-value=8.8e-06 Score=62.93 Aligned_cols=38 Identities=39% Similarity=1.042 Sum_probs=34.6
Q ss_pred cccccccccCeE-EeCCCCccccHHhHHHHhc--CCCCCccc
Q 002964 810 CCVCCDSHIDSL-LYRCGHMCTCSKCANELVR--GGGKCPLC 848 (862)
Q Consensus 810 C~ICld~~~d~v-llPCGH~c~C~~Ca~~L~~--~~~~CPiC 848 (862)
|.||++...... +++|||. ||..|+..+.. ...+||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence 889999999888 9999999 99999999987 56689998
No 20
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.89 E-value=1.1e-05 Score=59.19 Aligned_cols=38 Identities=32% Similarity=1.032 Sum_probs=34.1
Q ss_pred cccccccccCeEEeCCCCccccHHhHHHHhc-CCCCCccc
Q 002964 810 CCVCCDSHIDSLLYRCGHMCTCSKCANELVR-GGGKCPLC 848 (862)
Q Consensus 810 C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~-~~~~CPiC 848 (862)
|.||++.....++++|||. ||..|...+.. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence 7899999989999999999 99999999876 55679998
No 21
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=97.87 E-value=1.2e-05 Score=63.97 Aligned_cols=38 Identities=34% Similarity=0.822 Sum_probs=30.3
Q ss_pred cccccccccCeEEeCCCCccccHHhHHHHhcCC----CCCccc
Q 002964 810 CCVCCDSHIDSLLYRCGHMCTCSKCANELVRGG----GKCPLC 848 (862)
Q Consensus 810 C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~----~~CPiC 848 (862)
|+||++-..+.+.++|||. ||..|+..++... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHS-FCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSE-EEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCH-HHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999999999 9999999998643 369988
No 22
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.86 E-value=7.6e-06 Score=92.23 Aligned_cols=48 Identities=35% Similarity=0.661 Sum_probs=43.0
Q ss_pred cccccccccccccCeEEeCCCCccccHHhHHHHhcCCCCCccccccccc
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVE 854 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~ 854 (862)
....|.||++...+.+++||||. ||..|+..+......||+|+.++..
T Consensus 25 ~~l~C~IC~d~~~~PvitpCgH~-FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFDVPVLTSCSHT-FCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhhCccCCCCCCc-hhHHHHHHHHhCCCCCCCCCCcccc
Confidence 35799999999999999999999 9999999988777789999998754
No 23
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.81 E-value=1.5e-05 Score=63.44 Aligned_cols=41 Identities=37% Similarity=0.902 Sum_probs=35.0
Q ss_pred ccccccccc---cCeEEeCCCCccccHHhHHHHhcCCCCCccccc
Q 002964 809 TCCVCCDSH---IDSLLYRCGHMCTCSKCANELVRGGGKCPLCRA 850 (862)
Q Consensus 809 ~C~ICld~~---~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa 850 (862)
.|.||+... ....+++|||. ||..|+..+......||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~-~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHI-FCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCH-HHHHHHHhhcCCCCCCcCCCC
Confidence 388999776 45688999999 999999999866679999985
No 24
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.78 E-value=8.2e-06 Score=90.66 Aligned_cols=48 Identities=29% Similarity=0.783 Sum_probs=43.2
Q ss_pred cccccccccccCeEEeCCCCccccHHhHHHHhcC--CCCCcccccccccee
Q 002964 808 GTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRG--GGKCPLCRAPIVEVI 856 (862)
Q Consensus 808 ~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~--~~~CPiCRa~I~~vI 856 (862)
..|.||-++.+++.+-||||. +|..|...|... +..||+||..|.+.-
T Consensus 370 eLCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 589999999999999999999 999999999843 568999999998753
No 25
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=6.7e-05 Score=83.15 Aligned_cols=47 Identities=28% Similarity=0.785 Sum_probs=39.0
Q ss_pred ccccccccccccc-------------CeEEeCCCCccccHHhHHHHhcCCCCCcccccccc
Q 002964 806 RKGTCCVCCDSHI-------------DSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIV 853 (862)
Q Consensus 806 ~~~~C~ICld~~~-------------d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~ 853 (862)
.+..|.||+|... ...-+||||. +-..|.+.|.....+||+||.|+.
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHi-lHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI-LHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccce-eeHHHHHHHHHhccCCCcccCccc
Confidence 3579999998722 2356899998 999999999998899999999853
No 26
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=1.8e-05 Score=84.52 Aligned_cols=46 Identities=28% Similarity=0.609 Sum_probs=39.7
Q ss_pred ccccccccccccCeEEeCCCCccccHHhHHH-HhcC-CCCCcccccccc
Q 002964 807 KGTCCVCCDSHIDSLLYRCGHMCTCSKCANE-LVRG-GGKCPLCRAPIV 853 (862)
Q Consensus 807 ~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~-L~~~-~~~CPiCRa~I~ 853 (862)
...|.||++.+......||||. ||..|... +... ...||+||+.+.
T Consensus 215 d~kC~lC~e~~~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 215 DYKCFLCLEEPEVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccceeeeecccCCcccccccch-hhHHHHHHHHHhhccccCchhhhhcc
Confidence 5789999999999999999999 99999999 5543 446999998763
No 27
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=1.8e-05 Score=87.07 Aligned_cols=50 Identities=22% Similarity=0.718 Sum_probs=45.0
Q ss_pred cccccccccccccCeEEeCCCCccccHHhHHHHhcCCCCCcccccccccee
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVI 856 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~vI 856 (862)
++..|+|||..+++++|.||+|. .|+.|+.+-.-+.+.|-+|++.|..++
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~-SC~~CI~qHlmN~k~CFfCktTv~~~~ 470 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHR-SCYGCITQHLMNCKRCFFCKTTVIDVI 470 (489)
T ss_pred ccccCcceecccchhhccCCCCc-hHHHHHHHHHhcCCeeeEecceeeehh
Confidence 45799999999999999999999 899999998777889999999887644
No 28
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.52 E-value=3.4e-05 Score=84.58 Aligned_cols=48 Identities=23% Similarity=0.590 Sum_probs=44.0
Q ss_pred cccccccccccccCeEEeCCCCccccHHhHHHHhcCCCCCccccccccc
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVE 854 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~ 854 (862)
.-..|-||++=....++.||+|. ||.-|+.......+.||.|+.++..
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHt-fCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHT-FCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHHHhHHHHHhcCceeccccch-HHHHHHHHHhccCCCCCceecccch
Confidence 34689999999999999999999 9999999999999999999998865
No 29
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.46 E-value=5.6e-05 Score=81.56 Aligned_cols=50 Identities=26% Similarity=0.442 Sum_probs=44.1
Q ss_pred cccccccccccccccCeEEeCCCCccccHHhHHHHhcCCCCCccccccccc
Q 002964 804 HVRKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVE 854 (862)
Q Consensus 804 ~~~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~ 854 (862)
......|-||.+.....++.+|||. ||+-|+.......+.||+||.+...
T Consensus 22 LDs~lrC~IC~~~i~ip~~TtCgHt-FCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 22 LDSMLRCRICDCRISIPCETTCGHT-FCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred chhHHHhhhhhheeecceecccccc-hhHHHHHHHhcCCCCCccccccHHh
Confidence 3456789999999999999999999 9999999999888999999987543
No 30
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=5.9e-05 Score=75.74 Aligned_cols=44 Identities=32% Similarity=0.781 Sum_probs=38.8
Q ss_pred cccccccccccccCeEEeCCCCccccHHhHHHHhcCCCCCccccc
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRA 850 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa 850 (862)
+...|.||++......++||||. ||..|+..+....-.||.||.
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHN-FCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcCccccccch-HhHHHHHHhcCCCcCCcccCC
Confidence 45799999999998899999999 999999998864458999993
No 31
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=6.3e-05 Score=81.61 Aligned_cols=50 Identities=26% Similarity=0.592 Sum_probs=43.1
Q ss_pred cccccccccccccCeEEeCCCCccccHHhHHHHhcCC-CCCcccccccccee
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGG-GKCPLCRAPIVEVI 856 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~-~~CPiCRa~I~~vI 856 (862)
.+..|.||+....-.+.++|+|. ||+.|++...... +.|++||.+|..-|
T Consensus 6 ~~~eC~IC~nt~n~Pv~l~C~Hk-FCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 6 KKKECLICYNTGNCPVNLYCFHK-FCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred cCCcceeeeccCCcCccccccch-hhhhhhcchhhcCCCCCceecCCCCcch
Confidence 45789999999988899999999 9999999876554 45999999998755
No 32
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.38 E-value=9.2e-05 Score=59.52 Aligned_cols=30 Identities=27% Similarity=0.861 Sum_probs=20.7
Q ss_pred cccccccccC----eEEeCCCCccccHHhHHHHhcC
Q 002964 810 CCVCCDSHID----SLLYRCGHMCTCSKCANELVRG 841 (862)
Q Consensus 810 C~ICld~~~d----~vllPCGH~c~C~~Ca~~L~~~ 841 (862)
|+||++ ..+ .++++|||. +|..|+.+|...
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~-~c~~cl~~l~~~ 34 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHV-FCKDCLQKLSKK 34 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-E-EEHHHHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccH-HHHHHHHHHHhc
Confidence 899999 666 788999999 999999999864
No 33
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.37 E-value=0.00016 Score=63.69 Aligned_cols=42 Identities=26% Similarity=0.766 Sum_probs=33.8
Q ss_pred ccccccccccc-------------cCeEEeCCCCccccHHhHHHHhcCCCCCcccc
Q 002964 807 KGTCCVCCDSH-------------IDSLLYRCGHMCTCSKCANELVRGGGKCPLCR 849 (862)
Q Consensus 807 ~~~C~ICld~~-------------~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCR 849 (862)
.+.|.||+... ..+++.+|||. |...|+..+......||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHI-FHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEE-EEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCC-EEHHHHHHHHhcCCcCCCCC
Confidence 34599999765 33466789999 99999999998888999998
No 34
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.00012 Score=79.42 Aligned_cols=45 Identities=27% Similarity=0.660 Sum_probs=38.5
Q ss_pred cccccccccccC---eEEeCCCCccccHHhHHHHhc-CCCCCcccccccc
Q 002964 808 GTCCVCCDSHID---SLLYRCGHMCTCSKCANELVR-GGGKCPLCRAPIV 853 (862)
Q Consensus 808 ~~C~ICld~~~d---~vllPCGH~c~C~~Ca~~L~~-~~~~CPiCRa~I~ 853 (862)
-.|.|||.+.+. ..++||.|. |-..|..+|.. .+.+||+||.+|.
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~-FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHR-FHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCce-echhHHHHHHhhhcccCCccCCCCC
Confidence 589999986542 478899999 99999999986 6789999999875
No 35
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.16 E-value=0.00039 Score=60.96 Aligned_cols=48 Identities=21% Similarity=0.379 Sum_probs=39.1
Q ss_pred cccccccccccccCeEEeCCCCccccHHhHHHHhcC-CCCCccccccccc
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRG-GGKCPLCRAPIVE 854 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~-~~~CPiCRa~I~~ 854 (862)
....|+||.+-..+.+++||||. ||..|...+... ...||+|+.++..
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~t-yer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHT-YERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEE-EEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCceeCCcCCE-EcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 45789999999999999999998 999999999877 7899999998876
No 36
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.00026 Score=82.78 Aligned_cols=46 Identities=22% Similarity=0.603 Sum_probs=41.2
Q ss_pred cccccccccccccC-----eEEeCCCCccccHHhHHHHhcCCCCCccccccc
Q 002964 806 RKGTCCVCCDSHID-----SLLYRCGHMCTCSKCANELVRGGGKCPLCRAPI 852 (862)
Q Consensus 806 ~~~~C~ICld~~~d-----~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I 852 (862)
....|+||.+.... ...+||||. ||..|...|......||+||..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecccc-hHHHHHHHHHHHhCcCCcchhhh
Confidence 46799999998777 789999999 99999999998888999999843
No 37
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.00048 Score=76.68 Aligned_cols=46 Identities=22% Similarity=0.594 Sum_probs=38.0
Q ss_pred cccccccccccCe---EEeCCCCccccHHhHHHHhcCC-CCCccccccccc
Q 002964 808 GTCCVCCDSHIDS---LLYRCGHMCTCSKCANELVRGG-GKCPLCRAPIVE 854 (862)
Q Consensus 808 ~~C~ICld~~~d~---vllPCGH~c~C~~Ca~~L~~~~-~~CPiCRa~I~~ 854 (862)
..|+||++..... .++||+|. |-..|+..|.... ..||+|+..|..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~-FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHK-FHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCc-hhhccchhhHhhcCccCCCCCCcCCC
Confidence 5999999876543 67899999 9999999998544 569999998765
No 38
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.89 E-value=0.00062 Score=75.13 Aligned_cols=51 Identities=35% Similarity=0.692 Sum_probs=43.7
Q ss_pred cccccccccccccCeEEeCCCCccccHHhHHHHh--cCCCCCccccccccceee
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELV--RGGGKCPLCRAPIVEVIR 857 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~--~~~~~CPiCRa~I~~vIr 857 (862)
+...|.||-....-..++||+|. +|..|+..+. ...+.||+||..-..|+-
T Consensus 60 en~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e~V~f 112 (493)
T COG5236 60 ENMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETEAVVF 112 (493)
T ss_pred ccceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccceEEE
Confidence 46899999999998999999999 9999999886 356789999988766653
No 39
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.00037 Score=77.15 Aligned_cols=47 Identities=26% Similarity=0.659 Sum_probs=38.3
Q ss_pred ccccccccccccCeEEeC-CCCccccHHhHHHHh-cCCCCCccccccccc
Q 002964 807 KGTCCVCCDSHIDSLLYR-CGHMCTCSKCANELV-RGGGKCPLCRAPIVE 854 (862)
Q Consensus 807 ~~~C~ICld~~~d~vllP-CGH~c~C~~Ca~~L~-~~~~~CPiCRa~I~~ 854 (862)
...|.||++....+...+ |+|. ||+.|+.+-. ..++.||.||+....
T Consensus 43 ~v~c~icl~llk~tmttkeClhr-fc~~ci~~a~r~gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 43 QVICPICLSLLKKTMTTKECLHR-FCFDCIWKALRSGNNECPTCRKKLVS 91 (381)
T ss_pred hhccHHHHHHHHhhcccHHHHHH-HHHHHHHHHHHhcCCCCchHHhhccc
Confidence 578999999877665544 9999 9999998755 566789999998765
No 40
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.0012 Score=73.75 Aligned_cols=51 Identities=24% Similarity=0.610 Sum_probs=41.4
Q ss_pred cccccccccccccCeE-----E---eCCCCccccHHhHHHHh--cC-----CCCCccccccccceee
Q 002964 806 RKGTCCVCCDSHIDSL-----L---YRCGHMCTCSKCANELV--RG-----GGKCPLCRAPIVEVIR 857 (862)
Q Consensus 806 ~~~~C~ICld~~~d~v-----l---lPCGH~c~C~~Ca~~L~--~~-----~~~CPiCRa~I~~vIr 857 (862)
....|.||++...... | .+|.|. ||..|+..|. .+ .+.||+||.++..++.
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~p 225 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNP 225 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCccccccc
Confidence 4579999999876655 4 679999 9999999998 33 4789999998877653
No 41
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.0015 Score=74.12 Aligned_cols=49 Identities=33% Similarity=0.819 Sum_probs=44.0
Q ss_pred ccccccccccccccCeEEeCCCCccccHHhHHHHhcCCCCCccccccccc
Q 002964 805 VRKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVE 854 (862)
Q Consensus 805 ~~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~ 854 (862)
..+..|+||+......+.+||||. +|..|+.+.......||.||.++..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs-~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHS-FCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCcccccccc-ccHHHHHHHhccCCCCccccccccc
Confidence 356899999999999999999999 9999988887788899999998876
No 42
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.07 E-value=0.0023 Score=54.30 Aligned_cols=45 Identities=24% Similarity=0.657 Sum_probs=37.5
Q ss_pred ccccccccccccCeEEeCCCCccccHHhHHHHhcCCCCCccccccccc
Q 002964 807 KGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVE 854 (862)
Q Consensus 807 ~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~ 854 (862)
...|..|.......+++||||+ .|..|-..-.. ..||+|..+|..
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~-I~~~~f~~~rY--ngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHL-ICDNCFPGERY--NGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEccccccccccccccce-eeccccChhhc--cCCCCCCCcccC
Confidence 4579999998888899999999 79999876543 489999998853
No 43
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.59 E-value=0.0048 Score=64.13 Aligned_cols=48 Identities=25% Similarity=0.553 Sum_probs=42.8
Q ss_pred ccccccccccccCeEEeCCCCccccHHhHHHHhcCCCCCccccccccce
Q 002964 807 KGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEV 855 (862)
Q Consensus 807 ~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~v 855 (862)
...|.||.......++..|||. ||..|+..-...+..|-+|.+..-+.
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~-FC~~Cai~~y~kg~~C~~Cgk~t~G~ 243 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHS-FCSLCAIRKYQKGDECGVCGKATYGR 243 (259)
T ss_pred ceeehhchhhccchhhhhcchh-HHHHHHHHHhccCCcceecchhhccc
Confidence 5799999999999999999999 99999999888889999999866553
No 44
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.005 Score=67.21 Aligned_cols=49 Identities=24% Similarity=0.594 Sum_probs=43.9
Q ss_pred ccccccccccccCeEEeCCCCccccHHhHHHHhcCCCCCcccccccccee
Q 002964 807 KGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVI 856 (862)
Q Consensus 807 ~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~vI 856 (862)
...|-||.....+.++..|||. ||..|+..-...+..|++|.+.+.++.
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~-fc~~ca~~~~qk~~~c~vC~~~t~g~~ 289 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHY-FCEVCALKPYQKGEKCYVCSQQTHGSF 289 (313)
T ss_pred CccccccccccccchhhcCCce-eehhhhccccccCCcceeccccccccc
Confidence 4579999999999999999999 999999998888889999999887643
No 45
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.011 Score=63.97 Aligned_cols=49 Identities=24% Similarity=0.562 Sum_probs=39.1
Q ss_pred ccccccccccccccCe-EEeCCCCccccHHhHHHHhcC--CCCCccccccccc
Q 002964 805 VRKGTCCVCCDSHIDS-LLYRCGHMCTCSKCANELVRG--GGKCPLCRAPIVE 854 (862)
Q Consensus 805 ~~~~~C~ICld~~~d~-vllPCGH~c~C~~Ca~~L~~~--~~~CPiCRa~I~~ 854 (862)
..+..|++|-+.+... +..+|||. +|+.|+.+-... .-.||.|..++..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCcc
Confidence 4567999999888766 55679998 999999887643 3489999988764
No 46
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.43 E-value=0.011 Score=65.19 Aligned_cols=30 Identities=37% Similarity=0.987 Sum_probs=25.5
Q ss_pred CCCCccccHHhHHHHhcC-CCCCccccccccc
Q 002964 824 RCGHMCTCSKCANELVRG-GGKCPLCRAPIVE 854 (862)
Q Consensus 824 PCGH~c~C~~Ca~~L~~~-~~~CPiCRa~I~~ 854 (862)
+|||. ||..|+..++.. ...||.|+.++..
T Consensus 25 ~CGH~-~C~sCv~~l~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 25 VCGHT-LCESCVDLLFVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCc-ccHHHHHHHhcCCCCCCCCCCCccch
Confidence 79999 999999998744 4589999988765
No 47
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=95.32 E-value=0.0054 Score=53.65 Aligned_cols=44 Identities=32% Similarity=0.860 Sum_probs=23.9
Q ss_pred ccccccccccccCeE-EeCCCCccccHHhHHHHhcCCCCCcccccccc
Q 002964 807 KGTCCVCCDSHIDSL-LYRCGHMCTCSKCANELVRGGGKCPLCRAPIV 853 (862)
Q Consensus 807 ~~~C~ICld~~~d~v-llPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~ 853 (862)
...|.+|.+-....+ +..|.|. ||..|+.... +..||+|..|..
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~~~--~~~CPvC~~Paw 51 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHI-FCSSCIRDCI--GSECPVCHTPAW 51 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS---B-TTTGGGGT--TTB-SSS--B-S
T ss_pred hcCCcHHHHHhcCCceeccCccH-HHHHHhHHhc--CCCCCCcCChHH
Confidence 367999999988885 5789999 9999998754 347999998753
No 48
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=95.11 E-value=0.019 Score=52.71 Aligned_cols=33 Identities=27% Similarity=0.675 Sum_probs=27.2
Q ss_pred eEEeCCCCccccHHhHHHHhcC---CCCCcccccccc
Q 002964 820 SLLYRCGHMCTCSKCANELVRG---GGKCPLCRAPIV 853 (862)
Q Consensus 820 ~vllPCGH~c~C~~Ca~~L~~~---~~~CPiCRa~I~ 853 (862)
.++..|+|. |-..|+.++... .+.||+||++..
T Consensus 47 lv~g~C~H~-FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 47 LVWGKCSHN-FHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred eeeccCccH-HHHHHHHHHHccccCCCCCCCcCCeee
Confidence 356679999 999999999863 478999999753
No 49
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.0089 Score=68.84 Aligned_cols=48 Identities=25% Similarity=0.629 Sum_probs=37.4
Q ss_pred cccccccccccc-----------------cCeEEeCCCCccccHHhHHHHhcCC-CCCccccccccc
Q 002964 806 RKGTCCVCCDSH-----------------IDSLLYRCGHMCTCSKCANELVRGG-GKCPLCRAPIVE 854 (862)
Q Consensus 806 ~~~~C~ICld~~-----------------~d~vllPCGH~c~C~~Ca~~L~~~~-~~CPiCRa~I~~ 854 (862)
....|+|||... .+..+.||.|. |-..|...+.... -.||+||.++..
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hi-fH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHI-FHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHH-HHHHHHHHHHhhhcccCCccCCCCCC
Confidence 356899999631 23456799999 9999999999744 489999998764
No 50
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=94.76 E-value=0.008 Score=72.06 Aligned_cols=50 Identities=28% Similarity=0.490 Sum_probs=39.4
Q ss_pred ccccccccccccCeE---EeCCCCccccHHhHHHHhcCCCCCccccccccceee
Q 002964 807 KGTCCVCCDSHIDSL---LYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIR 857 (862)
Q Consensus 807 ~~~C~ICld~~~d~v---llPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~vIr 857 (862)
...|.+|+....+-+ -.+|+|. ||..|+..|...-.+||+||..+..++.
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~-FC~~Ci~sWsR~aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHY-FCEECVGSWSRCAQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccc-cHHHHhhhhhhhcccCchhhhhhheeee
Confidence 357888876554432 3479999 9999999999888899999998877654
No 51
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=94.50 E-value=0.0096 Score=65.82 Aligned_cols=52 Identities=25% Similarity=0.497 Sum_probs=44.3
Q ss_pred ccccccccccccCeEEeC-CCCccccHHhHHHHhcCCCCCccccccccceeeee
Q 002964 807 KGTCCVCCDSHIDSLLYR-CGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAY 859 (862)
Q Consensus 807 ~~~C~ICld~~~d~vllP-CGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~vIriy 859 (862)
...|.+|-.=.++++.+. |-|. ||..|+.........||+|...|-+.....
T Consensus 15 ~itC~LC~GYliDATTI~eCLHT-FCkSCivk~l~~~~~CP~C~i~ih~t~pl~ 67 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHT-FCKSCIVKYLEESKYCPTCDIVIHKTHPLL 67 (331)
T ss_pred ceehhhccceeecchhHHHHHHH-HHHHHHHHHHHHhccCCccceeccCccccc
Confidence 468999999999886665 9999 999999998877889999999988775443
No 52
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.57 E-value=0.044 Score=45.52 Aligned_cols=42 Identities=36% Similarity=0.984 Sum_probs=22.1
Q ss_pred cccccccc--cCeEEeC--CCCccccHHhHHHHhc-CCCCCccccccc
Q 002964 810 CCVCCDSH--IDSLLYR--CGHMCTCSKCANELVR-GGGKCPLCRAPI 852 (862)
Q Consensus 810 C~ICld~~--~d~vllP--CGH~c~C~~Ca~~L~~-~~~~CPiCRa~I 852 (862)
|++|.+.. .+..|+| ||+. .|..|...+.. ..+.||.||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~-IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQ-ICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCc-HHHHHHHHHHhccCCCCCCCCCCC
Confidence 67777654 3445666 8888 89999999986 578999999864
No 53
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.47 E-value=0.03 Score=67.71 Aligned_cols=45 Identities=36% Similarity=0.905 Sum_probs=38.3
Q ss_pred cccccccccccCeEEeCCCCccccHHhHHHHhcC--CCCCccccccccc
Q 002964 808 GTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRG--GGKCPLCRAPIVE 854 (862)
Q Consensus 808 ~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~--~~~CPiCRa~I~~ 854 (862)
..|.||++ +..+++.+|||. +|..|....... ...||+||..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~-~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHD-FCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccch-HHHHHHHhccccccCCCCcHHHHHHHH
Confidence 79999999 888899999999 999999987643 3479999987754
No 54
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.42 E-value=0.056 Score=58.09 Aligned_cols=48 Identities=23% Similarity=0.495 Sum_probs=40.7
Q ss_pred cccccccccccccCe----EEeCCCCccccHHhHHHHhcCCCCCccccccccc
Q 002964 806 RKGTCCVCCDSHIDS----LLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVE 854 (862)
Q Consensus 806 ~~~~C~ICld~~~d~----vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~ 854 (862)
....|+||.+...++ ++-||||+ +|..|+.++......||+|-.+...
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~V-v~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHV-VTKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcE-eeHHHHHHhccccccccCCCCcCcc
Confidence 456899999865543 67799999 8999999999888999999988764
No 55
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=93.35 E-value=0.33 Score=44.10 Aligned_cols=29 Identities=24% Similarity=0.625 Sum_probs=22.7
Q ss_pred cccccccccccc--CeEEeCCCCccccHHhHH
Q 002964 807 KGTCCVCCDSHI--DSLLYRCGHMCTCSKCAN 836 (862)
Q Consensus 807 ~~~C~ICld~~~--d~vllPCGH~c~C~~Ca~ 836 (862)
...|.+|..... ..+++||||. +.+.|+.
T Consensus 78 ~~~C~vC~k~l~~~~f~~~p~~~v-~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGNSVFVVFPCGHV-VHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCCceEEEeCCCeE-Eeccccc
Confidence 467999997654 4477899998 8999874
No 56
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=93.21 E-value=0.024 Score=62.41 Aligned_cols=44 Identities=30% Similarity=0.659 Sum_probs=31.9
Q ss_pred cccccccccCe--EEeCCCCccccHHhHHHHhcCCCCCcccccccccee
Q 002964 810 CCVCCDSHIDS--LLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVI 856 (862)
Q Consensus 810 C~ICld~~~d~--vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~vI 856 (862)
||.=|+.++.+ -++||.|+ ||.+|+..-. .+.||.|--+|..+.
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHv-FCl~CAr~~~--dK~Cp~C~d~VqrIe 137 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHV-FCLECARSDS--DKICPLCDDRVQRIE 137 (389)
T ss_pred eecccCCcceeeecccccchh-hhhhhhhcCc--cccCcCcccHHHHHH
Confidence 44434555443 67899999 9999998654 568999998776543
No 57
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=92.87 E-value=0.1 Score=52.91 Aligned_cols=51 Identities=27% Similarity=0.659 Sum_probs=36.5
Q ss_pred cccccccccccCeEEeCCC-Ccccc-----------HHhHHHHhcC-------------------------------CCC
Q 002964 808 GTCCVCCDSHIDSLLYRCG-HMCTC-----------SKCANELVRG-------------------------------GGK 844 (862)
Q Consensus 808 ~~C~ICld~~~d~vllPCG-H~c~C-----------~~Ca~~L~~~-------------------------------~~~ 844 (862)
-.|+|||+-|-++|||-|- |--.| ..|..++.+. ...
T Consensus 3 ~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 82 (162)
T PF07800_consen 3 VTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPELA 82 (162)
T ss_pred ccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccccccc
Confidence 5799999999999999875 32222 3566555431 235
Q ss_pred Cccccccccceeee
Q 002964 845 CPLCRAPIVEVIRA 858 (862)
Q Consensus 845 CPiCRa~I~~vIri 858 (862)
||+||..|.+.+.+
T Consensus 83 CPLCRG~V~GWtvv 96 (162)
T PF07800_consen 83 CPLCRGEVKGWTVV 96 (162)
T ss_pred CccccCceeceEEc
Confidence 99999999987655
No 58
>PF04641 Rtf2: Rtf2 RING-finger
Probab=92.84 E-value=0.076 Score=57.11 Aligned_cols=47 Identities=30% Similarity=0.496 Sum_probs=37.8
Q ss_pred cccccccccccc----cCeEEeCCCCccccHHhHHHHhcCCCCCccccccccc
Q 002964 806 RKGTCCVCCDSH----IDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVE 854 (862)
Q Consensus 806 ~~~~C~ICld~~----~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~ 854 (862)
....|+|+.... .-+++.||||+ ||..|+..+. ....||+|-.++..
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V-~s~~alke~k-~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCV-FSEKALKELK-KSKKCPVCGKPFTE 162 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCE-eeHHHHHhhc-ccccccccCCcccc
Confidence 457899998654 34466799999 9999999996 45689999999875
No 59
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=92.53 E-value=0.054 Score=61.59 Aligned_cols=49 Identities=29% Similarity=0.682 Sum_probs=42.6
Q ss_pred cccccccccccccCeEE-eCCCCccccHHhHHHHhcCCCCCccccccccce
Q 002964 806 RKGTCCVCCDSHIDSLL-YRCGHMCTCSKCANELVRGGGKCPLCRAPIVEV 855 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vl-lPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~v 855 (862)
.+..|.+|+....+.+. ..|||. ||..|...+.....+||.|+..+...
T Consensus 20 ~~l~C~~C~~vl~~p~~~~~cgh~-fC~~C~~~~~~~~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 20 ENLLCPICMSVLRDPVQTTTCGHR-FCAGCLLESLSNHQKCPVCRQELTQA 69 (391)
T ss_pred ccccCccccccccCCCCCCCCCCc-ccccccchhhccCcCCcccccccchh
Confidence 45899999999999887 499999 99999999987788999998876553
No 60
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=92.38 E-value=0.049 Score=60.47 Aligned_cols=55 Identities=22% Similarity=0.507 Sum_probs=41.9
Q ss_pred ccccccccccccccCeEEeCC-CCccccHHhHHHHhcCCCCCccccc--cccceeeeee
Q 002964 805 VRKGTCCVCCDSHIDSLLYRC-GHMCTCSKCANELVRGGGKCPLCRA--PIVEVIRAYS 860 (862)
Q Consensus 805 ~~~~~C~ICld~~~d~vllPC-GH~c~C~~Ca~~L~~~~~~CPiCRa--~I~~vIriy~ 860 (862)
.....|+||..+..+..++-- |-+ ||+.|+.......+.||+-.. .+..++++|.
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyV-fCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~~ 355 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYV-FCYPCIFSYVVNYGHCPVTGYPASVDHLIRLFN 355 (357)
T ss_pred CccccChhHHhccCCCceEEecceE-EeHHHHHHHHHhcCCCCccCCcchHHHHHHHhc
Confidence 456899999988877655554 666 999999999888899998554 4555666664
No 61
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.37 E-value=0.062 Score=61.14 Aligned_cols=43 Identities=23% Similarity=0.653 Sum_probs=32.7
Q ss_pred cccccccccccc---CeEEeCCCCccccHHhHHHHhc--------CCCCCccccc
Q 002964 807 KGTCCVCCDSHI---DSLLYRCGHMCTCSKCANELVR--------GGGKCPLCRA 850 (862)
Q Consensus 807 ~~~C~ICld~~~---d~vllPCGH~c~C~~Ca~~L~~--------~~~~CPiCRa 850 (862)
...|+|||+... ...++||+|+ ||..|++.... +.-+||-|.-
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHV-FCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred cccceeeehhhcCcceeeecccchH-HHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 468999998764 4689999999 99999988642 1236776653
No 62
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=90.45 E-value=0.096 Score=61.11 Aligned_cols=46 Identities=28% Similarity=0.668 Sum_probs=38.8
Q ss_pred cccccccccccccCeEEeCCCCccccHHhHHHHhc-----CCCCCccccccc
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVR-----GGGKCPLCRAPI 852 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~-----~~~~CPiCRa~I 852 (862)
....|.+|.+...+.+...|.|. ||..|.+.... .+-+||.|-..+
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~-FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHK-FCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred CceeecccCChhhhhHhhhhhHH-HHHHHHHHHHHhhhcccCCCCccccccc
Confidence 45789999999999999999999 99999977653 346899998654
No 63
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=90.21 E-value=0.16 Score=56.28 Aligned_cols=46 Identities=22% Similarity=0.558 Sum_probs=30.8
Q ss_pred cccccccccc-------------------ccCeEEeCCCCccccHHhHHHHhcC----------CCCCccccccccc
Q 002964 807 KGTCCVCCDS-------------------HIDSLLYRCGHMCTCSKCANELVRG----------GGKCPLCRAPIVE 854 (862)
Q Consensus 807 ~~~C~ICld~-------------------~~d~vllPCGH~c~C~~Ca~~L~~~----------~~~CPiCRa~I~~ 854 (862)
...|++|+.. +.+..|-||||+ |..=....+.. ...||+|-..+.+
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv--~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHV--CSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccc--cchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 5689888752 334467799999 45444444432 3579999998876
No 64
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=90.03 E-value=0.17 Score=55.91 Aligned_cols=45 Identities=36% Similarity=0.908 Sum_probs=36.8
Q ss_pred ccccccccccccccCeEEeCC--CCccccHHhHHHHhcCCCCCccccccccc
Q 002964 805 VRKGTCCVCCDSHIDSLLYRC--GHMCTCSKCANELVRGGGKCPLCRAPIVE 854 (862)
Q Consensus 805 ~~~~~C~ICld~~~d~vllPC--GH~c~C~~Ca~~L~~~~~~CPiCRa~I~~ 854 (862)
..-..|+||++...-.++ -| ||+ .|..|..++. .+||.||.+|..
T Consensus 46 ~~lleCPvC~~~l~~Pi~-QC~nGHl-aCssC~~~~~---~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIF-QCDNGHL-ACSSCRTKVS---NKCPTCRLPIGN 92 (299)
T ss_pred hhhccCchhhccCcccce-ecCCCcE-ehhhhhhhhc---ccCCcccccccc
Confidence 456799999988776654 45 899 8999998776 599999999984
No 65
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.72 E-value=0.16 Score=58.52 Aligned_cols=47 Identities=26% Similarity=0.460 Sum_probs=35.1
Q ss_pred ccccccccccccccccC----eEEeCCCCccccHHhHHHHhcCCCCCccccccc
Q 002964 803 AHVRKGTCCVCCDSHID----SLLYRCGHMCTCSKCANELVRGGGKCPLCRAPI 852 (862)
Q Consensus 803 ~~~~~~~C~ICld~~~d----~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I 852 (862)
+.++-..|+||++..-. ++..+|.|. |-..|...|.. .+||+||-..
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hs-fh~~cl~~w~~--~scpvcR~~q 221 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTILCNHS-FHCSCLMKWWD--SSCPVCRYCQ 221 (493)
T ss_pred CcccCCCcchhHhhcCccccceeeeecccc-cchHHHhhccc--CcChhhhhhc
Confidence 45567899999975432 245689999 88888888874 4899999543
No 66
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=88.54 E-value=0.39 Score=39.64 Aligned_cols=40 Identities=23% Similarity=0.693 Sum_probs=31.3
Q ss_pred ccccccc--cccCeEEeCCC-----CccccHHhHHHHhcC--CCCCcccc
Q 002964 809 TCCVCCD--SHIDSLLYRCG-----HMCTCSKCANELVRG--GGKCPLCR 849 (862)
Q Consensus 809 ~C~ICld--~~~d~vllPCG-----H~c~C~~Ca~~L~~~--~~~CPiCR 849 (862)
.|.||++ ...+..+.||. |. +-..|...|... ..+||+|.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~-vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKY-VHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhH-HHHHHHHHHHHHcCCCcCCCCC
Confidence 4899996 55667888995 66 689999999854 44899995
No 67
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=88.36 E-value=0.22 Score=63.34 Aligned_cols=50 Identities=18% Similarity=0.592 Sum_probs=38.5
Q ss_pred cccccccccccccc---CeEEeCCCCccccHHhHHHHhcC----------CCCCccccccccce
Q 002964 805 VRKGTCCVCCDSHI---DSLLYRCGHMCTCSKCANELVRG----------GGKCPLCRAPIVEV 855 (862)
Q Consensus 805 ~~~~~C~ICld~~~---d~vllPCGH~c~C~~Ca~~L~~~----------~~~CPiCRa~I~~v 855 (862)
..+..|.|||...- -++-+.|+|+ |-..|...+... .-.||+|..+|..+
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~Hi-FHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHI-FHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccc-hhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 34679999997643 3466789999 999999887643 23699999999764
No 68
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.92 E-value=0.26 Score=53.81 Aligned_cols=50 Identities=20% Similarity=0.529 Sum_probs=38.3
Q ss_pred cccccccccccccccc----------CeEEeCCCCccccHHhHHHHhc--CCCCCcccccccc
Q 002964 803 AHVRKGTCCVCCDSHI----------DSLLYRCGHMCTCSKCANELVR--GGGKCPLCRAPIV 853 (862)
Q Consensus 803 ~~~~~~~C~ICld~~~----------d~vllPCGH~c~C~~Ca~~L~~--~~~~CPiCRa~I~ 853 (862)
...++..|.||-.... ++.-+.|+|. |-..|+..++- ...+||.|+..|.
T Consensus 220 khl~d~vCaVCg~~~~~s~~eegvienty~LsCnHv-FHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 220 KHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHV-FHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCCCcchhHhhcchheeecchhhhhhhheeeecccc-hHHHhhhhheeecCCCCCchHHHHhh
Confidence 3456789999975443 2345789999 99999999985 3457999998875
No 69
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=87.71 E-value=0.53 Score=52.33 Aligned_cols=53 Identities=4% Similarity=-0.075 Sum_probs=44.3
Q ss_pred cccccccccccccccCeEEeCCCCccccHHhHHHHhcCCCCCccccccccceeee
Q 002964 804 HVRKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRA 858 (862)
Q Consensus 804 ~~~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~vIri 858 (862)
.....+|.+|-.....+++.||||..+|..|+.. ...+.||+|-..+-.+++|
T Consensus 340 ~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~--s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 340 LMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLASA--SASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred chhhcccccccCceeeeEeecCCcccChhhhhhc--ccCCccccccccceeeeec
Confidence 3456799999999999999999999999999983 3467999999877666655
No 70
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=87.31 E-value=0.28 Score=60.66 Aligned_cols=47 Identities=21% Similarity=0.538 Sum_probs=34.4
Q ss_pred ccccccccccc-------cCeEEeCCCCccccHHhHHHHhcC--CCCCccccccccc
Q 002964 807 KGTCCVCCDSH-------IDSLLYRCGHMCTCSKCANELVRG--GGKCPLCRAPIVE 854 (862)
Q Consensus 807 ~~~C~ICld~~-------~d~vllPCGH~c~C~~Ca~~L~~~--~~~CPiCRa~I~~ 854 (862)
...|.|||.-- ..-..--|.|. |-..|.-+|... ...||+||..|+-
T Consensus 1469 ~eECaICYsvL~~vdr~lPskrC~TCknK-FH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1469 HEECAICYSVLDMVDRSLPSKRCATCKNK-FHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred cchhhHHHHHHHHHhccCCccccchhhhh-hhHHHHHHHHHhcCCCCCCcccccccc
Confidence 46899999522 12223348898 999999999864 4689999988863
No 71
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=87.22 E-value=0.22 Score=53.56 Aligned_cols=45 Identities=29% Similarity=0.713 Sum_probs=33.2
Q ss_pred cccccccccccc---cCe--EEeC-CCCccccHHhHHHHhcCC-CCCc--ccccc
Q 002964 806 RKGTCCVCCDSH---IDS--LLYR-CGHMCTCSKCANELVRGG-GKCP--LCRAP 851 (862)
Q Consensus 806 ~~~~C~ICld~~---~d~--vllP-CGH~c~C~~Ca~~L~~~~-~~CP--iCRa~ 851 (862)
....|+||.... .++ ++-| |-|. +|..|...+...+ ..|| .|..-
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHr-mCESCvdRIFs~GpAqCP~~gC~kI 62 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHR-MCESCVDRIFSRGPAQCPYKGCGKI 62 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHH-HHHHHHHHHhcCCCCCCCCccHHHH
Confidence 456899998532 233 3446 9999 9999999998654 4799 88753
No 72
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=87.00 E-value=0.36 Score=40.34 Aligned_cols=46 Identities=26% Similarity=0.728 Sum_probs=27.6
Q ss_pred cccccccccccCeEEeCCC-CccccHHhHHHHhcCCCCCcccccccccee
Q 002964 808 GTCCVCCDSHIDSLLYRCG-HMCTCSKCANELVRGGGKCPLCRAPIVEVI 856 (862)
Q Consensus 808 ~~C~ICld~~~d~vllPCG-H~c~C~~Ca~~L~~~~~~CPiCRa~I~~vI 856 (862)
..|.-|+-.... ++.|. |. .|..|...|...+..||+|..++...+
T Consensus 3 ~nCKsCWf~~k~--Li~C~dHY-LCl~CLt~ml~~s~~C~iC~~~LPtki 49 (50)
T PF03854_consen 3 YNCKSCWFANKG--LIKCSDHY-LCLNCLTLMLSRSDRCPICGKPLPTKI 49 (50)
T ss_dssp ----SS-S--SS--EEE-SS-E-EEHHHHHHT-SSSSEETTTTEE----S
T ss_pred ccChhhhhcCCC--eeeecchh-HHHHHHHHHhccccCCCcccCcCcccc
Confidence 357788877666 55787 66 999999999999999999999887654
No 73
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=85.69 E-value=0.24 Score=56.38 Aligned_cols=52 Identities=27% Similarity=0.615 Sum_probs=0.0
Q ss_pred ccccccccc-------------------cccCeEEeCCCCccccHHhHHHHhcC---------CCCCccccccccc---e
Q 002964 807 KGTCCVCCD-------------------SHIDSLLYRCGHMCTCSKCANELVRG---------GGKCPLCRAPIVE---V 855 (862)
Q Consensus 807 ~~~C~ICld-------------------~~~d~vllPCGH~c~C~~Ca~~L~~~---------~~~CPiCRa~I~~---v 855 (862)
...|++|.. .+...+|.||||+| -...+.-|..- ...||+|-.++.. +
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~-SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g~ 406 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVC-SEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQGY 406 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeeccccccc-chhhhhhhhcCCCCCCcccccccCCcccCcccCCCCc
Confidence 467888874 23456788999994 24444444321 2579999999975 4
Q ss_pred eeee
Q 002964 856 IRAY 859 (862)
Q Consensus 856 Iriy 859 (862)
++++
T Consensus 407 vrLi 410 (416)
T PF04710_consen 407 VRLI 410 (416)
T ss_dssp ----
T ss_pred eEEE
Confidence 5543
No 74
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=85.22 E-value=0.43 Score=52.68 Aligned_cols=42 Identities=29% Similarity=0.661 Sum_probs=33.9
Q ss_pred cccccccccccCeEEeC-CCCccccHHhHHH-HhcCCCCCccccc
Q 002964 808 GTCCVCCDSHIDSLLYR-CGHMCTCSKCANE-LVRGGGKCPLCRA 850 (862)
Q Consensus 808 ~~C~ICld~~~d~vllP-CGH~c~C~~Ca~~-L~~~~~~CPiCRa 850 (862)
..|+.|..-.++.+-.| |||. ||..|+.. |......||.|-.
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~-fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHT-FCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccch-HHHHHHhhhhhhccccCCCccc
Confidence 68999988777776665 8888 99999975 4556679999986
No 75
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.88 E-value=2.6 Score=52.35 Aligned_cols=30 Identities=27% Similarity=0.343 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCcccCCCcc
Q 002964 354 LDLLVRIERERQRELQGLLEHRAVSDFAHR 383 (862)
Q Consensus 354 ~Dll~rmereRqREL~~L~e~~aVS~F~hR 383 (862)
.|.-...+++|=.+|+-.+-..|=.-|.|+
T Consensus 374 y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k 403 (911)
T KOG2034|consen 374 FDKALEIARTRPDALETVLLKQADFLFQDK 403 (911)
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHhhh
Confidence 456677888888888888888888888887
No 76
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=84.86 E-value=0.58 Score=46.53 Aligned_cols=47 Identities=21% Similarity=0.624 Sum_probs=39.5
Q ss_pred cccccccccccCeEEeC----CCCccccHHhHHHHhcC---CCCCccccccccce
Q 002964 808 GTCCVCCDSHIDSLLYR----CGHMCTCSKCANELVRG---GGKCPLCRAPIVEV 855 (862)
Q Consensus 808 ~~C~ICld~~~d~vllP----CGH~c~C~~Ca~~L~~~---~~~CPiCRa~I~~v 855 (862)
-.|-||.+...+.-|+. ||-. .|..|...||+. .++||+|+.+....
T Consensus 81 YeCnIC~etS~ee~FLKPneCCgY~-iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 81 YECNICKETSAEERFLKPNECCGYS-ICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred eeccCcccccchhhcCCcccccchH-HHHHHHHHHHHHcccCCCCCccccccccc
Confidence 58999999998887774 8866 899999999863 57899999987654
No 77
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.67 E-value=2.5 Score=42.33 Aligned_cols=43 Identities=33% Similarity=0.863 Sum_probs=25.5
Q ss_pred cccccccccccc-cCeEEeCCCCcc------ccHHhHHHHhcCC----CCCccccccc
Q 002964 806 RKGTCCVCCDSH-IDSLLYRCGHMC------TCSKCANELVRGG----GKCPLCRAPI 852 (862)
Q Consensus 806 ~~~~C~ICld~~-~d~vllPCGH~c------~C~~Ca~~L~~~~----~~CPiCRa~I 852 (862)
....|-||.... .+ -|||.| ||..|...+...+ -.|-+|+...
T Consensus 64 ddatC~IC~KTKFAD----G~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 64 DDATCGICHKTKFAD----GCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQ 117 (169)
T ss_pred cCcchhhhhhccccc----ccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHH
Confidence 456899998533 33 499985 3555544443222 1488887654
No 78
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=84.51 E-value=0.27 Score=54.60 Aligned_cols=53 Identities=11% Similarity=0.133 Sum_probs=43.3
Q ss_pred cccccccccccccCeEEeCCCCccccHHhHHHHh-cCCCCCccccccccceeee
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELV-RGGGKCPLCRAPIVEVIRA 858 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~-~~~~~CPiCRa~I~~vIri 858 (862)
..-.|++|+.+..-+.+.+|||-+||..|+...+ +....|++|...+.....+
T Consensus 135 ~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~i 188 (394)
T KOG2113|consen 135 ATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQI 188 (394)
T ss_pred CccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhcc
Confidence 3568999999999999999999999999988875 4455699998766655443
No 79
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=83.60 E-value=0.71 Score=51.83 Aligned_cols=47 Identities=28% Similarity=0.748 Sum_probs=35.4
Q ss_pred ccccccccccc--cCeEEe--CCCCccccHHhHHHHhc-CCCCCccccccccc
Q 002964 807 KGTCCVCCDSH--IDSLLY--RCGHMCTCSKCANELVR-GGGKCPLCRAPIVE 854 (862)
Q Consensus 807 ~~~C~ICld~~--~d~vll--PCGH~c~C~~Ca~~L~~-~~~~CPiCRa~I~~ 854 (862)
+..|+.|++.. .+--|+ |||-. .|..|...+.. ..+.||.||.....
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~-ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQ-ICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cccCcccccccccccCCcccCCcccH-HHHHHHHHHHhhccCCChHhhhhccc
Confidence 45699999754 233455 57777 79999999875 46899999987655
No 80
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=81.60 E-value=1.3 Score=37.90 Aligned_cols=41 Identities=20% Similarity=0.481 Sum_probs=28.3
Q ss_pred cccccccccccccCeEEe-CCCCccccHHhHHHHhc--CCCCCcc
Q 002964 806 RKGTCCVCCDSHIDSLLY-RCGHMCTCSKCANELVR--GGGKCPL 847 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vll-PCGH~c~C~~Ca~~L~~--~~~~CPi 847 (862)
-...|+|.+....+.+.- .|||. |....+..+.. ....||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~-fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHT-FEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--E-EEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCe-ecHHHHHHHHHhcCCCCCCC
Confidence 457899999999998775 79998 99999999983 3457998
No 81
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=81.03 E-value=0.4 Score=42.25 Aligned_cols=45 Identities=29% Similarity=0.710 Sum_probs=20.9
Q ss_pred ccccccccccc-Ce----EEe---CCCCccccHHhHHHHhcC-----------CCCCcccccccc
Q 002964 808 GTCCVCCDSHI-DS----LLY---RCGHMCTCSKCANELVRG-----------GGKCPLCRAPIV 853 (862)
Q Consensus 808 ~~C~ICld~~~-d~----vll---PCGH~c~C~~Ca~~L~~~-----------~~~CPiCRa~I~ 853 (862)
..|.||+...- .. ++- .|++. |-..|...+... .+.||.|+++|.
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~-fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKK-FHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT-----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCH-HHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 57999997543 11 222 47766 677888887531 246999999885
No 82
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=79.60 E-value=1.7 Score=49.54 Aligned_cols=48 Identities=25% Similarity=0.662 Sum_probs=33.2
Q ss_pred cccccccccccccCeEEeC-CC----C-----------cc-----ccHHhHHHHhcC-------------CCCCcccccc
Q 002964 806 RKGTCCVCCDSHIDSLLYR-CG----H-----------MC-----TCSKCANELVRG-------------GGKCPLCRAP 851 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllP-CG----H-----------~c-----~C~~Ca~~L~~~-------------~~~CPiCRa~ 851 (862)
+.+.|.-|+....++.+.. |. | .| -|..|..++... +..||+||++
T Consensus 270 e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~ 349 (358)
T PF10272_consen 270 ELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAK 349 (358)
T ss_pred ccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccc
Confidence 3468889998888876652 42 1 11 288999988632 4579999998
Q ss_pred cc
Q 002964 852 IV 853 (862)
Q Consensus 852 I~ 853 (862)
.-
T Consensus 350 FC 351 (358)
T PF10272_consen 350 FC 351 (358)
T ss_pred ce
Confidence 54
No 83
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=78.89 E-value=1.9 Score=39.77 Aligned_cols=44 Identities=27% Similarity=0.486 Sum_probs=33.0
Q ss_pred cccccccc-----cccCeEEeCCCCccccHHhHHHHhcCCCCCccccccc
Q 002964 808 GTCCVCCD-----SHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPI 852 (862)
Q Consensus 808 ~~C~ICld-----~~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I 852 (862)
+.|+-|.- ....++.--|.|. |-..|+..+....+.||+||++.
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHa-FH~HCI~rWL~Tk~~CPld~q~w 80 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHA-FHDHCIYRWLDTKGVCPLDRQTW 80 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchH-HHHHHHHHHHhhCCCCCCCCcee
Confidence 45555554 2233345569999 99999999999899999999864
No 84
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=77.15 E-value=0.8 Score=50.77 Aligned_cols=47 Identities=23% Similarity=0.574 Sum_probs=31.4
Q ss_pred cccccccccccc---CeEEeCCCCccccHHhHHHHhcC-----------------------CCCCccccccccc
Q 002964 807 KGTCCVCCDSHI---DSLLYRCGHMCTCSKCANELVRG-----------------------GGKCPLCRAPIVE 854 (862)
Q Consensus 807 ~~~C~ICld~~~---d~vllPCGH~c~C~~Ca~~L~~~-----------------------~~~CPiCRa~I~~ 854 (862)
.+.|+||+-... ..+..+|.|+ |-+.|....... ...||+||..|.-
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy-~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHY-MHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 467877775443 3567899999 777776543210 2369999998853
No 85
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.74 E-value=2 Score=46.61 Aligned_cols=31 Identities=35% Similarity=0.947 Sum_probs=25.5
Q ss_pred EEeCCCCccccHHhHHHHhcC-CCCCccccccc
Q 002964 821 LLYRCGHMCTCSKCANELVRG-GGKCPLCRAPI 852 (862)
Q Consensus 821 vllPCGH~c~C~~Ca~~L~~~-~~~CPiCRa~I 852 (862)
.++.|||. +|..|+..+... ...||+||.+.
T Consensus 23 ~~l~c~h~-~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 23 RVLKCGHT-ICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred cccccCce-ehHhHHHHHhcCceeeccCCCCcc
Confidence 44569999 999999999854 45799999984
No 86
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=73.29 E-value=1.4 Score=53.54 Aligned_cols=46 Identities=26% Similarity=0.645 Sum_probs=38.9
Q ss_pred cccccccccccCeEEeCCCCccccHHhHHHHhcC---CCCCccccccccc
Q 002964 808 GTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRG---GGKCPLCRAPIVE 854 (862)
Q Consensus 808 ~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~---~~~CPiCRa~I~~ 854 (862)
..|.||+......+++.|.|. ||..|...+... ...||+|+..+.+
T Consensus 22 lEc~ic~~~~~~p~~~kc~~~-~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 22 LECPICLEHVKEPSLLKCDHI-FLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred ccCCceeEEeeccchhhhhHH-HHhhhhhceeeccCccccchhhhhhhhh
Confidence 589999999888889999999 999999887653 3579999977654
No 87
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=72.94 E-value=2.1 Score=48.11 Aligned_cols=49 Identities=31% Similarity=0.752 Sum_probs=38.9
Q ss_pred ccccccccccc--cCeEEe--CCCCccccHHhHHHHhcCCCCCcccccccccee
Q 002964 807 KGTCCVCCDSH--IDSLLY--RCGHMCTCSKCANELVRGGGKCPLCRAPIVEVI 856 (862)
Q Consensus 807 ~~~C~ICld~~--~d~vll--PCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~vI 856 (862)
...|+||.+.. .+..++ ||||. .|..|...+....+.||+||.++..-.
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~-~~l~~~~t~~~~~~~~~~~rk~~~~~t 301 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFR-LCLFCHKTISDGDGRCPGCRKPYERNT 301 (327)
T ss_pred CCCCCCCCCccccccccccccccccc-chhhhhhcccccCCCCCccCCccccCc
Confidence 36899999743 344555 58999 999999999999999999998776543
No 88
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=71.08 E-value=1.3 Score=48.80 Aligned_cols=51 Identities=25% Similarity=0.643 Sum_probs=39.5
Q ss_pred ccccccccc----ccCeEEeCCCCccccHHhHHHHhcCCCCCccccccccceeeeee
Q 002964 808 GTCCVCCDS----HIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYS 860 (862)
Q Consensus 808 ~~C~ICld~----~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~vIriy~ 860 (862)
..|+||.+. ...+.+++|||. .=..|...+...+-.||+|-+ +.....+|.
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~-~h~~cf~e~~~~~y~CP~C~~-~~d~~~~~~ 213 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHY-MHSRCFEEMICEGYTCPICSK-PGDMSHYFR 213 (276)
T ss_pred CCCchhHHHhccccccCCccCcccc-hHHHHHHHHhccCCCCCcccc-hHHHHHHHH
Confidence 449999853 456678899999 568999999887789999999 766555543
No 89
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=70.57 E-value=2.3 Score=42.44 Aligned_cols=33 Identities=24% Similarity=0.540 Sum_probs=26.4
Q ss_pred ccccccccccccC---eEEeCCC------CccccHHhHHHHhc
Q 002964 807 KGTCCVCCDSHID---SLLYRCG------HMCTCSKCANELVR 840 (862)
Q Consensus 807 ~~~C~ICld~~~d---~vllPCG------H~c~C~~Ca~~L~~ 840 (862)
...|.||++...+ ++.++|| |+ ||..|..++..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkm-fc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKM-FCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHH-HHHHHHHHHHh
Confidence 3689999987655 5677888 66 99999999953
No 90
>PHA03096 p28-like protein; Provisional
Probab=68.81 E-value=8 Score=42.87 Aligned_cols=31 Identities=16% Similarity=0.285 Sum_probs=24.0
Q ss_pred cccccccccc--------CeEEeCCCCccccHHhHHHHhc
Q 002964 809 TCCVCCDSHI--------DSLLYRCGHMCTCSKCANELVR 840 (862)
Q Consensus 809 ~C~ICld~~~--------d~vllPCGH~c~C~~Ca~~L~~ 840 (862)
.|-||++... ...+-.|.|. ||..|...|..
T Consensus 180 ~c~ic~e~~~~k~~~~~~fgil~~c~h~-fc~~ci~~wr~ 218 (284)
T PHA03096 180 ICGICLENIKAKYIIKKYYGILSEIKHE-FNIFCIKIWMT 218 (284)
T ss_pred hcccchhhhhhhccccccccccccCCcH-HHHHHHHHHHH
Confidence 6999997543 3355569999 99999998864
No 91
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=67.64 E-value=1.5 Score=47.93 Aligned_cols=53 Identities=30% Similarity=0.548 Sum_probs=27.3
Q ss_pred cccccccccccccCeEEeCC---C--CccccHHhHHHHhcCCCCCccccccccceeeee
Q 002964 806 RKGTCCVCCDSHIDSLLYRC---G--HMCTCSKCANELVRGGGKCPLCRAPIVEVIRAY 859 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPC---G--H~c~C~~Ca~~L~~~~~~CPiCRa~I~~vIriy 859 (862)
..+.|+||-..+.-.++..= | |+ +|.-|...|.....+||.|...-...+..|
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L-~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~ 228 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYL-HCSLCGTEWRFVRIKCPYCGNTDHEKLEYF 228 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEE-EETTT--EEE--TTS-TTT---SS-EEE--
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEE-EcCCCCCeeeecCCCCcCCCCCCCcceeeE
Confidence 35899999999988777765 3 44 899999999888889999997655544443
No 92
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=67.09 E-value=9.6 Score=44.47 Aligned_cols=56 Identities=25% Similarity=0.564 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCccchhhhhhhhhhhccccCCCCCcCCCCCCCCCCCCccc
Q 002964 644 SLDQLIQSYVERQGRAPIDWDLHRNLPTPTPTSPERDQEQQRDEQNEDQHDADNRPSLVLPSPPVPPPQPLWH 716 (862)
Q Consensus 644 ~ld~Li~S~vqrq~~~~~~wd~~~~~~~~~~~~~e~~~e~q~~~~~~~~~~~~~~p~l~~pspp~pp~qplw~ 716 (862)
.++. |+.||..+-...+-|.-.+--......+ --....|.++.|+||.|||.|+|-
T Consensus 195 l~~e-L~~YVk~hhtTGl~W~~~g~~~~~~sa~----------------~~~~s~~g~PPPPPP~PPp~~~~~ 250 (480)
T KOG2675|consen 195 LFLE-LQAYVKEHHTTGLVWNKDGGAAPDASAS----------------PKAASAPGAPPPPPPAPPPAPFFA 250 (480)
T ss_pred HHHH-HHHHHHHhccccceecCCCCcccccccC----------------cCcccCCCCCCCCCCCCCCccccc
Confidence 3444 7899999887888999765322111111 112344677778888899999885
No 93
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.36 E-value=9 Score=47.77 Aligned_cols=45 Identities=24% Similarity=0.662 Sum_probs=33.4
Q ss_pred ccccccccc-ccCeEEeCCCCccccHHhHHHHhcCCCCCcccccccccee
Q 002964 808 GTCCVCCDS-HIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVI 856 (862)
Q Consensus 808 ~~C~ICld~-~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~vI 856 (862)
..|..|-.. ..-+|.+.|||. +-..|.. .....||-|+....++.
T Consensus 841 skCs~C~~~LdlP~VhF~CgHs-yHqhC~e---~~~~~CP~C~~e~~~~m 886 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHS-YHQHCLE---DKEDKCPKCLPELRGVM 886 (933)
T ss_pred eeecccCCccccceeeeecccH-HHHHhhc---cCcccCCccchhhhhhH
Confidence 578888743 345588899999 8899988 34469999998555443
No 94
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.96 E-value=3.4 Score=45.74 Aligned_cols=46 Identities=28% Similarity=0.699 Sum_probs=34.7
Q ss_pred cccccccccccccCeEEeCCC----CccccHHhHHHHhcC-----------CCCCccccccc
Q 002964 806 RKGTCCVCCDSHIDSLLYRCG----HMCTCSKCANELVRG-----------GGKCPLCRAPI 852 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCG----H~c~C~~Ca~~L~~~-----------~~~CPiCRa~I 852 (862)
....|.+|.+...|+-|+-|- |. ||+.|...-.+. +.+||+-...|
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HK-FCFPCSResIK~Qg~sgevYCPSGdkCPLvgS~v 327 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHK-FCFPCSRESIKQQGASGEVYCPSGDKCPLVGSNV 327 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccc-eecccCHHHHHhhcCCCceeCCCCCcCcccCCcc
Confidence 346788999999999999985 77 999999876542 34677655443
No 95
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=63.65 E-value=3.4 Score=50.86 Aligned_cols=52 Identities=12% Similarity=0.136 Sum_probs=34.8
Q ss_pred ccccccccccccccccCe-EEeC---CCCccccHHhHHHHhcC------CCCCccccccccce
Q 002964 803 AHVRKGTCCVCCDSHIDS-LLYR---CGHMCTCSKCANELVRG------GGKCPLCRAPIVEV 855 (862)
Q Consensus 803 ~~~~~~~C~ICld~~~d~-vllP---CGH~c~C~~Ca~~L~~~------~~~CPiCRa~I~~v 855 (862)
.......|.||+..+.+. -+.| |+|. +|+.|+..+... ...|++|..-|...
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~-~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sW 156 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVEN-QCPNCLKSCNDQLEESEKHTAHYFCEECVGSW 156 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhh-hhhHHHHHHHHHhhccccccccccHHHHhhhh
Confidence 334456677777664333 3345 9999 999999888632 34689998766543
No 96
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=62.96 E-value=2.1 Score=55.03 Aligned_cols=46 Identities=24% Similarity=0.655 Sum_probs=38.8
Q ss_pred cccccccccccc-CeEEeCCCCccccHHhHHHHhcCCCCCcccccccc
Q 002964 807 KGTCCVCCDSHI-DSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIV 853 (862)
Q Consensus 807 ~~~C~ICld~~~-d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~ 853 (862)
...|.||.+... -..++-|||. +|..|...+......||+|...+.
T Consensus 1153 ~~~c~ic~dil~~~~~I~~cgh~-~c~~c~~~~l~~~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQGGIAGCGHE-PCCRCDELWLYASSRCPICKSIKG 1199 (1394)
T ss_pred ccchHHHHHHHHhcCCeeeechh-HhhhHHHHHHHHhccCcchhhhhh
Confidence 468999999877 4466789998 999999999998899999995443
No 97
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.11 E-value=2.8 Score=50.60 Aligned_cols=38 Identities=26% Similarity=0.759 Sum_probs=28.6
Q ss_pred ccccccccccccc----CeEEeCCCCccccHHhHHHHhcCCCCCc
Q 002964 806 RKGTCCVCCDSHI----DSLLYRCGHMCTCSKCANELVRGGGKCP 846 (862)
Q Consensus 806 ~~~~C~ICld~~~----d~vllPCGH~c~C~~Ca~~L~~~~~~CP 846 (862)
.-..|.||+.... ..+++-|||. .|..|+..+... .||
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cght-ic~~c~~~lyn~--scp 51 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHT-ICGHCVQLLYNA--SCP 51 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccch-HHHHHHHhHhhc--cCC
Confidence 3467889976543 4466679999 899999999854 677
No 98
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.92 E-value=7 Score=44.99 Aligned_cols=45 Identities=27% Similarity=0.569 Sum_probs=34.0
Q ss_pred cccccccccccc---CeEEeCCCCccccHHhHHHHhcCCC---CCccccccc
Q 002964 807 KGTCCVCCDSHI---DSLLYRCGHMCTCSKCANELVRGGG---KCPLCRAPI 852 (862)
Q Consensus 807 ~~~C~ICld~~~---d~vllPCGH~c~C~~Ca~~L~~~~~---~CPiCRa~I 852 (862)
-..|+|=.+... -...+.|||+ .|..=+.+|...+. +||.|-...
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHV-ISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHV-ISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred eeecccchhhccCCCCCeeeeccce-ecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 468998764332 2367799999 89999999987654 799998654
No 99
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=58.68 E-value=18 Score=41.94 Aligned_cols=46 Identities=22% Similarity=0.527 Sum_probs=34.9
Q ss_pred ccccccccc----cccCeEEeCCCCccccHHhHHHHhcC--CCCCcccccccc
Q 002964 807 KGTCCVCCD----SHIDSLLYRCGHMCTCSKCANELVRG--GGKCPLCRAPIV 853 (862)
Q Consensus 807 ~~~C~ICld----~~~d~vllPCGH~c~C~~Ca~~L~~~--~~~CPiCRa~I~ 853 (862)
...|-.|-+ ++.....+||.|. |-..|+..+..+ ..+||-||+-+.
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHI-fH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHI-FHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHH-HHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 467888875 4455677899999 999999987643 457999995443
No 100
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=55.90 E-value=6.8 Score=37.78 Aligned_cols=30 Identities=20% Similarity=0.393 Sum_probs=26.1
Q ss_pred EEeCCCCccccHHhHHHHhcCCCCCcccccc
Q 002964 821 LLYRCGHMCTCSKCANELVRGGGKCPLCRAP 851 (862)
Q Consensus 821 vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~ 851 (862)
+---|.|. |-+.|+..+.+....||+|...
T Consensus 77 aWG~CNHa-FH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 77 AWGVCNHA-FHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred EeeecchH-HHHHHHHHHHhhcCcCCCcCcc
Confidence 33469999 9999999999999999999874
No 101
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=52.69 E-value=4.7 Score=45.10 Aligned_cols=46 Identities=26% Similarity=0.528 Sum_probs=35.4
Q ss_pred cccccccccccccCeEEeCC----CC-ccccHHhHHHHhcCCCCCcccccc
Q 002964 806 RKGTCCVCCDSHIDSLLYRC----GH-MCTCSKCANELVRGGGKCPLCRAP 851 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPC----GH-~c~C~~Ca~~L~~~~~~CPiCRa~ 851 (862)
....|+||-..+.-.++..- |+ +..|.-|...|.....+||.|...
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 35699999999876554432 32 247999999998888899999974
No 102
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=48.43 E-value=8.8 Score=43.09 Aligned_cols=45 Identities=24% Similarity=0.473 Sum_probs=34.7
Q ss_pred cccccccccccccCeEEeC---CCC-ccccHHhHHHHhcCCCCCccccc
Q 002964 806 RKGTCCVCCDSHIDSLLYR---CGH-MCTCSKCANELVRGGGKCPLCRA 850 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllP---CGH-~c~C~~Ca~~L~~~~~~CPiCRa 850 (862)
....|+||-..+.-.++.. =|+ ...|.-|...|.....+||.|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 4689999999987665432 232 23799999999888889999996
No 103
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=48.21 E-value=6.2 Score=36.23 Aligned_cols=29 Identities=28% Similarity=0.676 Sum_probs=23.1
Q ss_pred eCCCCccccHHhHHHHhc---CCCCCccccccc
Q 002964 823 YRCGHMCTCSKCANELVR---GGGKCPLCRAPI 852 (862)
Q Consensus 823 lPCGH~c~C~~Ca~~L~~---~~~~CPiCRa~I 852 (862)
--|.|+ |-..|+.++.. +.+.||+||...
T Consensus 49 G~C~h~-fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 49 GYCLHA-FHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred HHHHHH-HHHHHHHHHhcCccccccCCcchhee
Confidence 358898 89999999874 346899999854
No 104
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.62 E-value=15 Score=42.38 Aligned_cols=103 Identities=14% Similarity=0.218 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCccCCccCcccccccccccccccc
Q 002964 735 EWEMINDLRADMARLHQGMSHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGEQGMVAMTSEDGSKWAHVRKGTCCVCC 814 (862)
Q Consensus 735 Ele~I~DLR~ema~LqeEmseLrk~vkacmemQ~eLQRsIrqEVsaAL~rs~g~~~~a~e~sdD~sk~~~~~~~~C~ICl 814 (862)
.++....+..+-..||++-..|.+.+++.+-+-.-.++.. .++..-. +..++ ...--..|.||+
T Consensus 140 ~~~~l~q~~~et~~lqE~~~~L~~~~~~~~~~~lls~~~~-~~~~e~~-~t~~~--------------~~slv~sl~I~~ 203 (465)
T KOG0827|consen 140 DFQDLKQFDPETLELQENPSDLLISHEYIFGAALLSIKCF-FQTAEHW-MTSQP--------------TSSLVGSLSICF 203 (465)
T ss_pred HHHHHHhhCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-hhcCc--------------hHHHHhhhHhhH
Confidence 4455555556666677777777776666554433222221 1111100 00000 011235799998
Q ss_pred cccc----CeEEeCCCCccccHHhHHHHhcCCCCCccccccccc
Q 002964 815 DSHI----DSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVE 854 (862)
Q Consensus 815 d~~~----d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~ 854 (862)
.... .+.-+-|||. .-..|..++.....+||.|+..+..
T Consensus 204 ~slK~~y~k~~~~~~g~~-~~~~kL~k~L~~~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 204 ESLKQNYDKISAIVCGHI-YHHGKLSKWLATKRKLPSCRRELPK 246 (465)
T ss_pred HHHHHHHHHHHHHhhccc-chhhHHHHHHHHHHHhHHHHhhhhh
Confidence 5332 3344579999 7899999988777799999976643
No 105
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=41.62 E-value=15 Score=44.98 Aligned_cols=46 Identities=37% Similarity=0.801 Sum_probs=29.9
Q ss_pred cccccccccccccC---eEEeCCCCcc-------------------ccHHhHHHHhcCCCCCcccccc
Q 002964 806 RKGTCCVCCDSHID---SLLYRCGHMC-------------------TCSKCANELVRGGGKCPLCRAP 851 (862)
Q Consensus 806 ~~~~C~ICld~~~d---~vllPCGH~c-------------------~C~~Ca~~L~~~~~~CPiCRa~ 851 (862)
..+=||||-|..-+ .++|-=||.| ||.+|-.+-.-..-.|-+|-..
T Consensus 4 MVGGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~k 71 (900)
T KOG0956|consen 4 MVGGCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHK 71 (900)
T ss_pred cccceeeecCcCCCccCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCc
Confidence 34569999887643 3555556665 7999987655444567777543
No 106
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.08 E-value=29 Score=37.72 Aligned_cols=45 Identities=27% Similarity=0.632 Sum_probs=33.0
Q ss_pred ccccccccccccc------CeEEeC--------CCCccccHHhHHHHhcC-CCCCcccccc
Q 002964 806 RKGTCCVCCDSHI------DSLLYR--------CGHMCTCSKCANELVRG-GGKCPLCRAP 851 (862)
Q Consensus 806 ~~~~C~ICld~~~------d~vllP--------CGH~c~C~~Ca~~L~~~-~~~CPiCRa~ 851 (862)
....|-||..... ...++. |||. .|..|...+... ...||+|+..
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~ht-lc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHT-LCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHH-HHhcchHHHHHHhhhcCCcccce
Confidence 3468999986544 224445 9999 899999998643 3689999864
No 107
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=39.92 E-value=17 Score=39.21 Aligned_cols=27 Identities=37% Similarity=0.812 Sum_probs=23.0
Q ss_pred CccccHHhHHHHhcCCCCCcccccccc
Q 002964 827 HMCTCSKCANELVRGGGKCPLCRAPIV 853 (862)
Q Consensus 827 H~c~C~~Ca~~L~~~~~~CPiCRa~I~ 853 (862)
-|-.|..|-..+-.+-+.||+|.++-.
T Consensus 193 PMK~C~sC~qqIHRNAPiCPlCK~KsR 219 (230)
T PF10146_consen 193 PMKTCQSCHQQIHRNAPICPLCKAKSR 219 (230)
T ss_pred CcchhHhHHHHHhcCCCCCcccccccc
Confidence 355799999999999999999998643
No 108
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=39.11 E-value=22 Score=44.36 Aligned_cols=47 Identities=23% Similarity=0.468 Sum_probs=35.1
Q ss_pred ccccccccc--cccCeEEeCCCCcc----ccHHhHHHHhcC--CCCCcccccccc
Q 002964 807 KGTCCVCCD--SHIDSLLYRCGHMC----TCSKCANELVRG--GGKCPLCRAPIV 853 (862)
Q Consensus 807 ~~~C~ICld--~~~d~vllPCGH~c----~C~~Ca~~L~~~--~~~CPiCRa~I~ 853 (862)
+..|.||.. .+-+..+.||.... .-.+|...|... ..+|-+|..++.
T Consensus 12 ~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 12 KRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred chhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 478999994 45677888887542 356899998754 458999998764
No 109
>PLN02189 cellulose synthase
Probab=36.90 E-value=23 Score=45.45 Aligned_cols=50 Identities=24% Similarity=0.582 Sum_probs=33.2
Q ss_pred cccccccccccccc----CeEEeCCCC--ccccHHhHHHHhc-CCCCCccccccccc
Q 002964 805 VRKGTCCVCCDSHI----DSLLYRCGH--MCTCSKCANELVR-GGGKCPLCRAPIVE 854 (862)
Q Consensus 805 ~~~~~C~ICld~~~----d~vllPCGH--~c~C~~Ca~~L~~-~~~~CPiCRa~I~~ 854 (862)
.....|.||-|... .-.|+.|.- ...|..|..--.+ .+..||-|++....
T Consensus 32 ~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 32 LDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred ccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 34568999998732 225666641 1279999955443 45689999987763
No 110
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=36.55 E-value=38 Score=28.25 Aligned_cols=43 Identities=23% Similarity=0.399 Sum_probs=17.6
Q ss_pred cccccccccccCe-EEeCCCCccccHHhH--HHHhc--CCCCCcccccc
Q 002964 808 GTCCVCCDSHIDS-LLYRCGHMCTCSKCA--NELVR--GGGKCPLCRAP 851 (862)
Q Consensus 808 ~~C~ICld~~~d~-vllPCGH~c~C~~Ca--~~L~~--~~~~CPiCRa~ 851 (862)
..|+|.+...... --..|.|. -|++=. ..+.. ..-.||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~-~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHL-QCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS---EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCccc-ceECHHHHHHHhhccCCeECcCCcCc
Confidence 4688888766554 34569999 454332 22222 23479999874
No 111
>PHA02862 5L protein; Provisional
Probab=35.59 E-value=33 Score=35.08 Aligned_cols=45 Identities=22% Similarity=0.448 Sum_probs=32.1
Q ss_pred cccccccccccCeEEeCCCCcc----ccHHhHHHHhcC--CCCCcccccccc
Q 002964 808 GTCCVCCDSHIDSLLYRCGHMC----TCSKCANELVRG--GGKCPLCRAPIV 853 (862)
Q Consensus 808 ~~C~ICld~~~d~vllPCGH~c----~C~~Ca~~L~~~--~~~CPiCRa~I~ 853 (862)
..|-||++...+. +.||.-.. .-..|...|... ...||+|+.+..
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 5799999876443 57776432 246899998753 457999998763
No 112
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=34.77 E-value=7.9 Score=27.65 Aligned_cols=23 Identities=30% Similarity=0.876 Sum_probs=16.3
Q ss_pred ccHHhHHHHhcCCCCCccccccc
Q 002964 830 TCSKCANELVRGGGKCPLCRAPI 852 (862)
Q Consensus 830 ~C~~Ca~~L~~~~~~CPiCRa~I 852 (862)
+|..|...+......||.|.++|
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~~l 23 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGTPL 23 (23)
T ss_pred CCcccCCCCCCcCcchhhhCCcC
Confidence 46677777776667788887764
No 113
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.05 E-value=17 Score=41.79 Aligned_cols=34 Identities=24% Similarity=0.726 Sum_probs=24.0
Q ss_pred cccccccccccccCe----EEeCCCCccccHHhHHHHhc
Q 002964 806 RKGTCCVCCDSHIDS----LLYRCGHMCTCSKCANELVR 840 (862)
Q Consensus 806 ~~~~C~ICld~~~d~----vllPCGH~c~C~~Ca~~L~~ 840 (862)
....|.||+...... .+..|+|. ||..|.+....
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~-fC~~C~k~~ie 182 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHR-FCKDCVKQHIE 182 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccch-hhhHHhHHHhh
Confidence 356899999333222 34569999 99999987653
No 114
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=31.99 E-value=20 Score=33.70 Aligned_cols=37 Identities=27% Similarity=0.705 Sum_probs=26.6
Q ss_pred cccccccccccCeEEeCCCCccccHHhHHHHhcCCCCCccccccccc
Q 002964 808 GTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVE 854 (862)
Q Consensus 808 ~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~ 854 (862)
..|.||.... ..=||. +|..|+-.- +.|.||...|..
T Consensus 45 ~~C~~CK~~v-----~q~g~~-YCq~CAYkk----GiCamCGKki~d 81 (90)
T PF10235_consen 45 SKCKICKTKV-----HQPGAK-YCQTCAYKK----GICAMCGKKILD 81 (90)
T ss_pred cccccccccc-----ccCCCc-cChhhhccc----CcccccCCeecc
Confidence 4799995432 233655 799998655 499999998854
No 115
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=30.98 E-value=30 Score=39.22 Aligned_cols=33 Identities=33% Similarity=0.775 Sum_probs=28.1
Q ss_pred cccccccccccccCeEEeCCC--CccccHHhHHHHh
Q 002964 806 RKGTCCVCCDSHIDSLLYRCG--HMCTCSKCANELV 839 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCG--H~c~C~~Ca~~L~ 839 (862)
.+..|+.|-+....+.+++|. |+ .|..|.....
T Consensus 220 ~ni~C~~Ctdv~~~vlvf~Cns~Hv-tC~dCFr~yc 254 (446)
T KOG0006|consen 220 RNITCITCTDVRSPVLVFQCNSRHV-TCLDCFRLYC 254 (446)
T ss_pred ccceeEEecCCccceEEEecCCcee-ehHHhhhhHh
Confidence 346899999999999999999 98 8999987543
No 116
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.95 E-value=35 Score=39.66 Aligned_cols=27 Identities=30% Similarity=0.924 Sum_probs=22.1
Q ss_pred CCCCccccHHhHHHHhcCC---CCCcccccc
Q 002964 824 RCGHMCTCSKCANELVRGG---GKCPLCRAP 851 (862)
Q Consensus 824 PCGH~c~C~~Ca~~L~~~~---~~CPiCRa~ 851 (862)
-|||. |-..|..+|.... ..||+|+-.
T Consensus 25 ~cGhi-fh~~cl~qwfe~~Ps~R~cpic~ik 54 (465)
T KOG0827|consen 25 TCGHI-FHTTCLTQWFEGDPSNRGCPICQIK 54 (465)
T ss_pred chhhH-HHHHHHHHHHccCCccCCCCceeec
Confidence 39999 9999999998642 479999943
No 117
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.75 E-value=84 Score=39.53 Aligned_cols=43 Identities=19% Similarity=0.567 Sum_probs=29.1
Q ss_pred cccccccccccc-------CeEEeCCCCccccHHhHHHHhcCCCCCcccccc
Q 002964 807 KGTCCVCCDSHI-------DSLLYRCGHMCTCSKCANELVRGGGKCPLCRAP 851 (862)
Q Consensus 807 ~~~C~ICld~~~-------d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~ 851 (862)
+..|+.|+.... ..+++.|||+ +-..|...-.... .|-+|-..
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~c~h~-yhk~c~~~~~~~~-~~~~~~~~ 833 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFHCGHM-YHKECLMMESLRN-ACNIESGK 833 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEEccch-hhhcccccHHHhc-ccChhhce
Confidence 458999997543 4577899999 8899976543222 26666543
No 118
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=30.56 E-value=27 Score=37.99 Aligned_cols=25 Identities=32% Similarity=0.771 Sum_probs=21.8
Q ss_pred cccHHhHHHHhcCCCCCcccccccc
Q 002964 829 CTCSKCANELVRGGGKCPLCRAPIV 853 (862)
Q Consensus 829 c~C~~Ca~~L~~~~~~CPiCRa~I~ 853 (862)
-.|..|-.++-..-+.||+|.++-.
T Consensus 250 K~ClsChqqIHRNAPiCPlCKaKsR 274 (286)
T KOG4451|consen 250 KVCLSCHQQIHRNAPICPLCKAKSR 274 (286)
T ss_pred hHHHHHHHHHhcCCCCCcchhhccc
Confidence 3799999999999999999998643
No 119
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.45 E-value=25 Score=36.17 Aligned_cols=24 Identities=38% Similarity=0.826 Sum_probs=20.4
Q ss_pred cccHHhHHHHhcCCCCCccccccccce
Q 002964 829 CTCSKCANELVRGGGKCPLCRAPIVEV 855 (862)
Q Consensus 829 c~C~~Ca~~L~~~~~~CPiCRa~I~~v 855 (862)
.||..|..+.. ..||.|.++|.+.
T Consensus 29 ~fC~kCG~~tI---~~Cp~C~~~IrG~ 52 (158)
T PF10083_consen 29 KFCSKCGAKTI---TSCPNCSTPIRGD 52 (158)
T ss_pred HHHHHhhHHHH---HHCcCCCCCCCCc
Confidence 38999998876 3899999999874
No 120
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=28.43 E-value=30 Score=39.58 Aligned_cols=26 Identities=31% Similarity=0.650 Sum_probs=16.8
Q ss_pred ccccccccccccCeEEeCCCCccccHHhHH
Q 002964 807 KGTCCVCCDSHIDSLLYRCGHMCTCSKCAN 836 (862)
Q Consensus 807 ~~~C~ICld~~~d~vllPCGH~c~C~~Ca~ 836 (862)
...|+||-|+.... .-|-. +|..|-.
T Consensus 15 ~ElCPVCGDkVSGY---HYGLL-TCESCKG 40 (475)
T KOG4218|consen 15 GELCPVCGDKVSGY---HYGLL-TCESCKG 40 (475)
T ss_pred ccccccccCccccc---eeeee-ehhhhhh
Confidence 46899999887643 22333 6777753
No 121
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.26 E-value=64 Score=35.74 Aligned_cols=45 Identities=22% Similarity=0.344 Sum_probs=32.9
Q ss_pred cccccccc----ccccCeEEeCCCCccccHHhHHHHhcCCCCCccccccccc
Q 002964 807 KGTCCVCC----DSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVE 854 (862)
Q Consensus 807 ~~~C~ICl----d~~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~ 854 (862)
...|+|-- +...-+++.+|||+ |-..-...+. ...|++|.+.+..
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV-~SerAlKeik--as~C~~C~a~y~~ 159 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCV-FSERALKEIK--ASVCHVCGAAYQE 159 (293)
T ss_pred eeecccccceecceEEEEEEecccee-ccHHHHHHhh--hccccccCCcccc
Confidence 46788765 34455577899999 7777666665 4589999998754
No 122
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.44 E-value=32 Score=34.43 Aligned_cols=42 Identities=26% Similarity=0.620 Sum_probs=25.6
Q ss_pred ccccccccCeEEeCCCCc---cccHHhHHHHhcCCCCCccccccccce
Q 002964 811 CVCCDSHIDSLLYRCGHM---CTCSKCANELVRGGGKCPLCRAPIVEV 855 (862)
Q Consensus 811 ~ICld~~~d~vllPCGH~---c~C~~Ca~~L~~~~~~CPiCRa~I~~v 855 (862)
.||.........-.-.|- .||..|...-. -.||+|.++|.+-
T Consensus 8 qic~ngh~attaadq~pel~eafcskcgeati---~qcp~csasirgd 52 (160)
T COG4306 8 QICLNGHVATTAADQSPELMEAFCSKCGEATI---TQCPICSASIRGD 52 (160)
T ss_pred hhcCCCceeeccccCCHHHHHHHHhhhchHHH---hcCCccCCccccc
Confidence 456654433332222221 48999976644 2899999999763
No 123
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.07 E-value=32 Score=40.12 Aligned_cols=33 Identities=24% Similarity=0.557 Sum_probs=27.9
Q ss_pred cccccccccccccC-eEEeCCCCccccHHhHHHHh
Q 002964 806 RKGTCCVCCDSHID-SLLYRCGHMCTCSKCANELV 839 (862)
Q Consensus 806 ~~~~C~ICld~~~d-~vllPCGH~c~C~~Ca~~L~ 839 (862)
....|-||++.... ++.+.|||. ||..|.....
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~-~c~~cw~~yl 102 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHP-FCPPCWTGYL 102 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcH-HHHHHHHHHh
Confidence 34689999988875 788899999 9999998854
No 124
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=26.94 E-value=50 Score=41.21 Aligned_cols=45 Identities=18% Similarity=0.308 Sum_probs=36.5
Q ss_pred ccccccccccccCeEEeC--CCCccccHHhHHHHhcCCCCCcc--ccccc
Q 002964 807 KGTCCVCCDSHIDSLLYR--CGHMCTCSKCANELVRGGGKCPL--CRAPI 852 (862)
Q Consensus 807 ~~~C~ICld~~~d~vllP--CGH~c~C~~Ca~~L~~~~~~CPi--CRa~I 852 (862)
...|++|-.-.+...+++ |||. .-..|+.++......||. |....
T Consensus 779 ~~~CtVC~~vi~G~~~~c~~C~H~-gH~sh~~sw~~~~s~ca~~~C~~~c 827 (839)
T KOG0269|consen 779 SAKCTVCDLVIRGVDVWCQVCGHG-GHDSHLKSWFFKASPCAKSICPHLC 827 (839)
T ss_pred hcCceeecceeeeeEeeccccccc-ccHHHHHHHHhcCCCCccccCCccc
Confidence 458999998888777776 9998 789999999988778887 65443
No 125
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=26.62 E-value=2.1e+02 Score=27.49 Aligned_cols=45 Identities=20% Similarity=0.475 Sum_probs=27.4
Q ss_pred cccccccccccc-----cCeEEeCCCCccccHHhHHHHhc-CCCCCcccccc
Q 002964 806 RKGTCCVCCDSH-----IDSLLYRCGHMCTCSKCANELVR-GGGKCPLCRAP 851 (862)
Q Consensus 806 ~~~~C~ICld~~-----~d~vllPCGH~c~C~~Ca~~L~~-~~~~CPiCRa~ 851 (862)
....|.+|.... ...+...|+|. +|..|...... ..-.|.+|...
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~-VC~~C~~~~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHR-VCKKCGVYSKKEPIWLCKVCQKQ 103 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEE-EETTSEEETSSSCCEEEHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCcc-ccCccCCcCCCCCCEEChhhHHH
Confidence 446899998653 23455668888 78888776321 12368888753
No 126
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=26.08 E-value=61 Score=33.58 Aligned_cols=47 Identities=19% Similarity=0.474 Sum_probs=32.8
Q ss_pred cccccccccccccCeEEeCCCCcc----ccHHhHHHHhcC--CCCCcccccccc
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHMC----TCSKCANELVRG--GGKCPLCRAPIV 853 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~c----~C~~Ca~~L~~~--~~~CPiCRa~I~ 853 (862)
....|-||++.... ...||.-.. .-..|...|... ...|++|.++..
T Consensus 7 ~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 34689999988653 446766432 246799998753 457999998763
No 127
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.28 E-value=39 Score=38.02 Aligned_cols=28 Identities=29% Similarity=0.892 Sum_probs=21.3
Q ss_pred CCCccccHHhHHHHhc-------------CCCCCcccccccc
Q 002964 825 CGHMCTCSKCANELVR-------------GGGKCPLCRAPIV 853 (862)
Q Consensus 825 CGH~c~C~~Ca~~L~~-------------~~~~CPiCRa~I~ 853 (862)
|.-+ -|..|..++.. .+..||+||+..-
T Consensus 325 crp~-wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPL-WCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccH-HHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 6666 69999988853 2568999999754
No 128
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.38 E-value=55 Score=35.69 Aligned_cols=46 Identities=30% Similarity=0.590 Sum_probs=35.3
Q ss_pred cccccccccc--ccCeEEeCCCCccccHHhHHHHhcC--------CCCCcccccccc
Q 002964 807 KGTCCVCCDS--HIDSLLYRCGHMCTCSKCANELVRG--------GGKCPLCRAPIV 853 (862)
Q Consensus 807 ~~~C~ICld~--~~d~vllPCGH~c~C~~Ca~~L~~~--------~~~CPiCRa~I~ 853 (862)
...|..|-.. ..+++-+-|-|. |-..|....... +..||.|..+|-
T Consensus 50 ~pNC~LC~t~La~gdt~RLvCyhl-fHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLVCYHL-FHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCceeCCccccCcceeehhhhh-HHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 3578888754 356677889999 999999887642 457999998874
No 129
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=23.37 E-value=63 Score=35.30 Aligned_cols=8 Identities=38% Similarity=0.933 Sum_probs=5.9
Q ss_pred CCCccccc
Q 002964 843 GKCPLCRA 850 (862)
Q Consensus 843 ~~CPiCRa 850 (862)
..||-|..
T Consensus 222 v~CP~CgR 229 (239)
T COG1579 222 VFCPYCGR 229 (239)
T ss_pred ccCCccch
Confidence 46888875
No 130
>KOG1705 consensus Uncharacterized conserved protein, contains CXXC motifs [Function unknown]
Probab=22.23 E-value=24 Score=33.45 Aligned_cols=44 Identities=34% Similarity=0.844 Sum_probs=30.1
Q ss_pred ccccccccccccCeEEeCCCCccccHHhHHHHhcCCCCCccccccccceeeee
Q 002964 807 KGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAY 859 (862)
Q Consensus 807 ~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~vIriy 859 (862)
.+.|+|| +..+-||.-+-.|..|+-.-. .+.|.||.. .++..+|
T Consensus 27 DgkC~IC-----DS~VRP~tlVRiC~eC~~Gs~--q~~ciic~~--~gV~d~~ 70 (110)
T KOG1705|consen 27 DGKCVIC-----DSYVRPCTLVRICDECNYGSY--QGRCVICGG--VGVSDAY 70 (110)
T ss_pred CCccccc-----ccccccceeeeeehhcCCccc--cCceEEecC--CcccchH
Confidence 4689999 566667777778888875433 457888887 4444443
No 131
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=22.09 E-value=46 Score=37.92 Aligned_cols=44 Identities=20% Similarity=0.448 Sum_probs=32.5
Q ss_pred ccccccccccccCeEE---eCCCCccccHHhHHHHhcCCCCCcccccc
Q 002964 807 KGTCCVCCDSHIDSLL---YRCGHMCTCSKCANELVRGGGKCPLCRAP 851 (862)
Q Consensus 807 ~~~C~ICld~~~d~vl---lPCGH~c~C~~Ca~~L~~~~~~CPiCRa~ 851 (862)
...|-.|.+.....-. -.|.|. ||..|-.-+-..-..||.|-..
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~Ck~~-FCldCDv~iHesLh~CpgCeh~ 376 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCESCKNV-FCLDCDVFIHESLHNCPGCEHK 376 (378)
T ss_pred CcceeeeccccCCCCcEEchhccce-eeccchHHHHhhhhcCCCcCCC
Confidence 3459999665544433 358898 9999998887777799999743
No 132
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=21.49 E-value=88 Score=29.05 Aligned_cols=50 Identities=20% Similarity=0.490 Sum_probs=19.1
Q ss_pred ccccccccccccccCe----EEeCCCCc--cccHHhHHHHh-cCCCCCccccccccc
Q 002964 805 VRKGTCCVCCDSHIDS----LLYRCGHM--CTCSKCANELV-RGGGKCPLCRAPIVE 854 (862)
Q Consensus 805 ~~~~~C~ICld~~~d~----vllPCGH~--c~C~~Ca~~L~-~~~~~CPiCRa~I~~ 854 (862)
.+...|.||-+..-.. +|+-|..- -.|..|..-=. .....||.|+++...
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred cCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 3456899998754321 55555432 15888876543 345689999987654
No 133
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.12 E-value=59 Score=35.91 Aligned_cols=32 Identities=13% Similarity=0.160 Sum_probs=28.4
Q ss_pred ccccccccccccCeEEeCCCCccccHHhHHHHh
Q 002964 807 KGTCCVCCDSHIDSLLYRCGHMCTCSKCANELV 839 (862)
Q Consensus 807 ~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~ 839 (862)
-..|+.|+...++.++.|=||+ ||..|+....
T Consensus 43 FdcCsLtLqPc~dPvit~~Gyl-fdrEaILe~i 74 (303)
T KOG3039|consen 43 FDCCSLTLQPCRDPVITPDGYL-FDREAILEYI 74 (303)
T ss_pred cceeeeecccccCCccCCCCee-eeHHHHHHHH
Confidence 3578899999999999999999 9999988764
No 134
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=20.60 E-value=37 Score=35.21 Aligned_cols=17 Identities=29% Similarity=0.663 Sum_probs=12.4
Q ss_pred cCCCCCcccccccccee
Q 002964 840 RGGGKCPLCRAPIVEVI 856 (862)
Q Consensus 840 ~~~~~CPiCRa~I~~vI 856 (862)
.....||+|.++-..+.
T Consensus 147 e~P~~CPiCga~k~~F~ 163 (166)
T COG1592 147 EAPEVCPICGAPKEKFE 163 (166)
T ss_pred CCCCcCCCCCChHHHhh
Confidence 34468999999876654
No 135
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=20.34 E-value=1e+02 Score=25.01 Aligned_cols=38 Identities=24% Similarity=0.560 Sum_probs=20.2
Q ss_pred cccccccccCeEEeC---CCCccccHHhHHHHhcCCC--CCccc
Q 002964 810 CCVCCDSHIDSLLYR---CGHMCTCSKCANELVRGGG--KCPLC 848 (862)
Q Consensus 810 C~ICld~~~d~vllP---CGH~c~C~~Ca~~L~~~~~--~CPiC 848 (862)
|.+|.+.....+.-+ |+=. +-..|+........ +||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r-~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVR-LHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--E-E-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCch-HHHHHHHHHHhcCCCCCCcCC
Confidence 567777666655544 5544 56789988876543 79988
Done!