Query 002964
Match_columns 862
No_of_seqs 278 out of 1289
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 08:15:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002964.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002964hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vje_B MDM4 protein; proto-onc 99.3 1.5E-12 5.2E-17 108.7 4.2 55 806-860 6-62 (63)
2 2vje_A E3 ubiquitin-protein li 99.3 1.9E-12 6.4E-17 108.4 4.1 55 806-860 7-63 (64)
3 2ea5_A Cell growth regulator w 99.2 3.4E-12 1.2E-16 108.4 3.9 52 805-860 13-64 (68)
4 2yho_A E3 ubiquitin-protein li 99.1 3.6E-11 1.2E-15 104.7 2.7 50 807-860 18-67 (79)
5 2ecg_A Baculoviral IAP repeat- 99.0 3.7E-11 1.3E-15 102.8 1.7 51 806-860 24-74 (75)
6 4ic3_A E3 ubiquitin-protein li 99.0 6.5E-11 2.2E-15 101.3 2.9 50 807-860 24-73 (74)
7 4ayc_A E3 ubiquitin-protein li 99.0 2.8E-09 9.5E-14 100.8 11.1 50 807-857 53-102 (138)
8 3t6p_A Baculoviral IAP repeat- 98.8 6.9E-10 2.3E-14 120.7 2.6 51 806-860 294-344 (345)
9 2d8t_A Dactylidin, ring finger 98.8 4.5E-09 1.5E-13 88.4 4.6 49 805-854 13-61 (71)
10 2ecn_A Ring finger protein 141 98.7 3.6E-09 1.2E-13 88.2 2.9 54 806-861 14-67 (70)
11 2ysl_A Tripartite motif-contai 98.7 1.4E-08 4.8E-13 85.0 6.0 48 806-854 19-69 (73)
12 1chc_A Equine herpes virus-1 r 98.7 5.1E-09 1.7E-13 86.7 3.2 52 807-859 5-57 (68)
13 2csy_A Zinc finger protein 183 98.7 1.2E-08 4.2E-13 87.6 5.3 48 806-854 14-61 (81)
14 2xeu_A Ring finger protein 4; 98.7 7.2E-09 2.5E-13 84.1 3.1 52 807-859 3-63 (64)
15 3ng2_A RNF4, snurf, ring finge 98.7 6.3E-09 2.2E-13 86.5 2.4 53 806-859 9-70 (71)
16 2ea6_A Ring finger protein 4; 98.7 9.7E-09 3.3E-13 84.6 3.4 48 806-854 14-68 (69)
17 2ct2_A Tripartite motif protei 98.6 2.5E-08 8.6E-13 85.9 5.2 47 806-853 14-67 (88)
18 2ecm_A Ring finger and CHY zin 98.6 1.5E-08 5.2E-13 80.4 3.5 47 807-854 5-55 (55)
19 2ecw_A Tripartite motif-contai 98.6 3.5E-08 1.2E-12 84.0 6.0 48 806-854 18-71 (85)
20 2kiz_A E3 ubiquitin-protein li 98.6 2.4E-08 8.1E-13 83.1 4.7 50 806-856 13-65 (69)
21 2djb_A Polycomb group ring fin 98.6 2.4E-08 8.3E-13 84.1 4.1 49 806-855 14-63 (72)
22 2ecv_A Tripartite motif-contai 98.6 2.7E-08 9.2E-13 84.7 4.3 48 806-854 18-71 (85)
23 2ecy_A TNF receptor-associated 98.5 4.5E-08 1.5E-12 81.0 4.4 48 806-854 14-62 (66)
24 2ep4_A Ring finger protein 24; 98.5 3.7E-08 1.3E-12 82.9 3.2 52 806-858 14-68 (74)
25 2l0b_A E3 ubiquitin-protein li 98.5 4.9E-08 1.7E-12 86.3 4.1 48 806-854 39-89 (91)
26 3fl2_A E3 ubiquitin-protein li 98.5 4.4E-08 1.5E-12 90.7 4.0 48 806-854 51-99 (124)
27 1iym_A EL5; ring-H2 finger, ub 98.5 4.7E-08 1.6E-12 77.7 3.6 46 807-853 5-54 (55)
28 2ect_A Ring finger protein 126 98.5 5.7E-08 1.9E-12 82.6 4.3 49 806-855 14-65 (78)
29 2y43_A E3 ubiquitin-protein li 98.5 5.4E-08 1.9E-12 86.5 3.9 48 806-854 21-69 (99)
30 3ztg_A E3 ubiquitin-protein li 98.5 6.4E-08 2.2E-12 84.7 4.1 47 806-853 12-61 (92)
31 1t1h_A Gspef-atpub14, armadill 98.5 7.8E-08 2.7E-12 81.7 4.5 48 806-854 7-55 (78)
32 2yur_A Retinoblastoma-binding 98.5 7.2E-08 2.5E-12 81.9 4.3 47 806-853 14-63 (74)
33 1x4j_A Ring finger protein 38; 98.5 4E-08 1.4E-12 83.2 2.2 48 806-854 22-72 (75)
34 2egp_A Tripartite motif-contai 98.5 3.7E-08 1.3E-12 83.4 2.0 48 806-854 11-65 (79)
35 3lrq_A E3 ubiquitin-protein li 98.5 5.9E-08 2E-12 87.2 3.3 48 806-854 21-70 (100)
36 2ckl_A Polycomb group ring fin 98.5 1E-07 3.4E-12 86.2 4.8 48 806-854 14-62 (108)
37 2y1n_A E3 ubiquitin-protein li 98.5 9.3E-08 3.2E-12 105.6 5.1 51 808-859 333-384 (389)
38 2ysj_A Tripartite motif-contai 98.4 2.1E-07 7.3E-12 76.1 5.6 42 806-848 19-63 (63)
39 1z6u_A NP95-like ring finger p 98.4 1.1E-07 3.6E-12 92.0 3.9 48 806-854 77-125 (150)
40 1g25_A CDK-activating kinase a 98.4 1.1E-07 3.9E-12 78.3 3.5 47 807-854 3-55 (65)
41 1jm7_A BRCA1, breast cancer ty 98.4 1E-07 3.5E-12 85.8 3.0 47 807-854 21-70 (112)
42 1wgm_A Ubiquitin conjugation f 98.4 3.3E-07 1.1E-11 83.0 6.2 49 805-854 20-69 (98)
43 2ckl_B Ubiquitin ligase protei 98.4 1.7E-07 5.7E-12 90.8 4.5 47 806-853 53-101 (165)
44 1e4u_A Transcriptional repress 98.4 1.2E-07 4.2E-12 82.6 3.1 54 806-860 10-68 (78)
45 1v87_A Deltex protein 2; ring- 98.4 1.9E-07 6.5E-12 84.8 3.8 47 807-854 25-94 (114)
46 3l11_A E3 ubiquitin-protein li 98.3 9.1E-08 3.1E-12 87.3 1.2 48 806-854 14-62 (115)
47 2ecj_A Tripartite motif-contai 98.3 3.8E-07 1.3E-11 72.8 4.2 42 806-848 14-58 (58)
48 2c2l_A CHIP, carboxy terminus 98.3 9.9E-07 3.4E-11 90.0 8.4 49 805-854 206-255 (281)
49 3hct_A TNF receptor-associated 98.3 3.2E-07 1.1E-11 84.4 3.4 48 806-854 17-65 (118)
50 1bor_A Transcription factor PM 98.3 1.4E-07 4.7E-12 76.5 0.5 45 806-854 5-49 (56)
51 2kr4_A Ubiquitin conjugation f 98.3 6.3E-07 2.2E-11 78.8 4.6 49 805-854 12-60 (85)
52 1rmd_A RAG1; V(D)J recombinati 98.2 4.6E-07 1.6E-11 82.8 3.5 48 806-854 22-70 (116)
53 2kre_A Ubiquitin conjugation f 98.2 9.4E-07 3.2E-11 80.2 5.3 49 805-854 27-75 (100)
54 2ecl_A Ring-box protein 2; RNF 98.2 8.4E-07 2.9E-11 77.0 4.2 48 806-854 14-76 (81)
55 4ap4_A E3 ubiquitin ligase RNF 98.2 5.4E-07 1.8E-11 82.4 3.1 48 806-854 6-60 (133)
56 4ap4_A E3 ubiquitin ligase RNF 98.1 1E-06 3.5E-11 80.5 3.0 53 806-859 71-132 (133)
57 1jm7_B BARD1, BRCA1-associated 98.1 5.9E-07 2E-11 82.5 1.0 45 806-853 21-66 (117)
58 3knv_A TNF receptor-associated 98.1 1E-06 3.6E-11 84.3 2.6 46 806-852 30-76 (141)
59 2f42_A STIP1 homology and U-bo 98.0 7E-06 2.4E-10 82.2 7.4 49 805-854 104-153 (179)
60 3dpl_R Ring-box protein 1; ubi 98.0 4.7E-06 1.6E-10 76.7 4.5 46 806-852 36-99 (106)
61 3hcs_A TNF receptor-associated 97.9 5.4E-06 1.8E-10 80.4 3.4 48 806-854 17-65 (170)
62 2yu4_A E3 SUMO-protein ligase 97.8 6.3E-06 2.2E-10 73.5 3.0 52 806-858 6-69 (94)
63 4a0k_B E3 ubiquitin-protein li 97.6 8.7E-06 3E-10 76.4 0.3 46 806-852 47-110 (117)
64 3htk_C E3 SUMO-protein ligase 97.5 0.00055 1.9E-08 72.4 12.2 49 805-854 179-232 (267)
65 3vk6_A E3 ubiquitin-protein li 97.3 0.00022 7.6E-09 65.6 4.9 49 809-858 3-53 (101)
66 2d8s_A Cellular modulator of i 97.3 0.00013 4.4E-09 64.0 3.2 48 806-854 14-70 (80)
67 1wim_A KIAA0161 protein; ring 97.2 0.00012 4.1E-09 64.7 2.3 44 807-851 5-61 (94)
68 2bay_A PRE-mRNA splicing facto 97.1 0.00019 6.5E-09 59.8 2.7 46 808-854 4-50 (61)
69 2ct0_A Non-SMC element 1 homol 95.5 0.01 3.5E-07 51.6 4.1 48 807-855 15-65 (74)
70 1vyx_A ORF K3, K3RING; zinc-bi 95.1 0.012 4E-07 49.0 3.1 48 806-853 5-58 (60)
71 3k1l_B Fancl; UBC, ring, RWD, 95.0 0.0048 1.6E-07 67.7 0.5 48 806-854 307-373 (381)
72 2ko5_A Ring finger protein Z; 94.7 0.011 3.6E-07 54.1 1.8 50 806-858 27-77 (99)
73 3nw0_A Non-structural maintena 86.6 0.49 1.7E-05 49.1 4.3 47 807-854 180-229 (238)
74 1joc_A EEA1, early endosomal a 75.3 18 0.00061 34.0 10.2 89 736-838 10-103 (125)
75 2jun_A Midline-1; B-BOX, TRIM, 74.5 1.2 4.2E-05 39.2 1.9 31 807-838 3-36 (101)
76 2cs3_A Protein C14ORF4, MY039 70.6 1.6 5.4E-05 39.1 1.6 33 807-840 15-51 (93)
77 2fiy_A Protein FDHE homolog; F 60.4 1.6 5.5E-05 47.1 -0.4 46 806-851 181-231 (309)
78 2w6b_A RHO guanine nucleotide 54.7 37 0.0013 28.3 6.8 41 737-777 10-50 (56)
79 3m62_A Ubiquitin conjugation f 52.3 34 0.0012 42.2 9.0 50 805-854 889-938 (968)
80 2zet_C Melanophilin; complex, 42.4 20 0.00067 35.1 4.0 45 806-851 67-117 (153)
81 3i2d_A E3 SUMO-protein ligase 37.5 23 0.00078 39.3 4.0 46 806-852 248-298 (371)
82 3l4f_A RHO guanine nucleotide 34.6 1.1E+02 0.0038 26.0 6.8 40 737-776 7-46 (61)
83 4fo9_A E3 SUMO-protein ligase 32.1 32 0.0011 38.0 4.1 46 807-853 215-265 (360)
84 1z60_A TFIIH basal transcripti 31.5 31 0.0011 28.9 3.0 40 808-848 16-58 (59)
85 1gk6_A Vimentin; intermediate 23.2 2E+02 0.0068 23.7 6.4 38 737-774 7-44 (59)
86 2yy0_A C-MYC-binding protein; 23.1 1E+02 0.0035 25.2 4.5 30 745-774 20-49 (53)
87 2xv5_A Lamin-A/C; structural p 22.3 1.9E+02 0.0066 25.0 6.4 38 737-774 12-49 (74)
No 1
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.28 E-value=1.5e-12 Score=108.65 Aligned_cols=55 Identities=33% Similarity=0.756 Sum_probs=50.8
Q ss_pred cccccccccccccCeEEe--CCCCccccHHhHHHHhcCCCCCccccccccceeeeee
Q 002964 806 RKGTCCVCCDSHIDSLLY--RCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYS 860 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vll--PCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~vIriy~ 860 (862)
....|+||++.+.+++++ ||||+++|..|+..+....++||+||++|..++++|.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~ 62 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFI 62 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEec
Confidence 346899999999998887 9999999999999999888899999999999999995
No 2
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.27 E-value=1.9e-12 Score=108.39 Aligned_cols=55 Identities=27% Similarity=0.722 Sum_probs=51.1
Q ss_pred cccccccccccccCeEEe--CCCCccccHHhHHHHhcCCCCCccccccccceeeeee
Q 002964 806 RKGTCCVCCDSHIDSLLY--RCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYS 860 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vll--PCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~vIriy~ 860 (862)
+...|+||++.+.+++++ ||||+++|..|+..+......||+||++|..++++|.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~ 63 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYF 63 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEEC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeec
Confidence 456899999999999988 9999999999999999878899999999999999995
No 3
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=3.4e-12 Score=108.40 Aligned_cols=52 Identities=27% Similarity=0.739 Sum_probs=47.9
Q ss_pred ccccccccccccccCeEEeCCCCccccHHhHHHHhcCCCCCccccccccceeeeee
Q 002964 805 VRKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYS 860 (862)
Q Consensus 805 ~~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~vIriy~ 860 (862)
.+...|+||++.+.+++|+||||+++|..|+..+. .||+||++|..++++|.
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----~CP~CR~~i~~~~~i~~ 64 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ----QCPMCRQFVQESFALSG 64 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCS----SCTTTCCCCCCEECCCS
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCC----CCCCCCcchhceEEeec
Confidence 35679999999999999999999999999999764 99999999999999985
No 4
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.07 E-value=3.6e-11 Score=104.72 Aligned_cols=50 Identities=38% Similarity=0.948 Sum_probs=46.8
Q ss_pred ccccccccccccCeEEeCCCCccccHHhHHHHhcCCCCCccccccccceeeeee
Q 002964 807 KGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYS 860 (862)
Q Consensus 807 ~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~vIriy~ 860 (862)
...|+||++...+++++||||.+||..|+..+. .||+||++|..++++|.
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~~~i~~ 67 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVEHVQHVYL 67 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS----BCTTTCCBCCEEEECBC
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC----cCCCCCchhhCeEEEEe
Confidence 358999999999999999999999999999886 99999999999999985
No 5
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=3.7e-11 Score=102.77 Aligned_cols=51 Identities=31% Similarity=0.803 Sum_probs=46.5
Q ss_pred cccccccccccccCeEEeCCCCccccHHhHHHHhcCCCCCccccccccceeeeee
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYS 860 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~vIriy~ 860 (862)
....|+||++...+++++||||.+||..|+..+. .||+||.+|..++++|.
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~~~i~~ 74 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVD----KCPMCYTVITFKQKIFM 74 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCS----BCTTTCCBCCCCCBCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCC----CCccCCceecCcEEEec
Confidence 3568999999999999999999999999998764 99999999999999984
No 6
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.04 E-value=6.5e-11 Score=101.31 Aligned_cols=50 Identities=32% Similarity=0.802 Sum_probs=46.7
Q ss_pred ccccccccccccCeEEeCCCCccccHHhHHHHhcCCCCCccccccccceeeeee
Q 002964 807 KGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYS 860 (862)
Q Consensus 807 ~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~vIriy~ 860 (862)
...|+||++...+++++||||.+||..|+..+ ..||+||++|..++++|.
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~~ 73 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQKILM 73 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSEEEECBC
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccCcEEEee
Confidence 46899999999999999999999999999988 499999999999999984
No 7
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.96 E-value=2.8e-09 Score=100.84 Aligned_cols=50 Identities=30% Similarity=0.726 Sum_probs=44.9
Q ss_pred ccccccccccccCeEEeCCCCccccHHhHHHHhcCCCCCccccccccceee
Q 002964 807 KGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIR 857 (862)
Q Consensus 807 ~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~vIr 857 (862)
...|+||++...+++++||||. ||..|+..+......||+||.+|.....
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 102 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDIKSKTY 102 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCE-EEHHHHHHHTTTCSBCTTTCCBCCCEEE
T ss_pred cCCCcccCcccCCceECCCCCC-ccHHHHHHHHHcCCcCCCCCCcCCCCCC
Confidence 3579999999999999999997 9999999998888899999999976543
No 8
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.84 E-value=6.9e-10 Score=120.75 Aligned_cols=51 Identities=37% Similarity=0.933 Sum_probs=46.9
Q ss_pred cccccccccccccCeEEeCCCCccccHHhHHHHhcCCCCCccccccccceeeeee
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYS 860 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~vIriy~ 860 (862)
+...|+||++...+++++||||.|||..|+..+. .||+||.+|..++++|.
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~----~CP~CR~~i~~~~~i~~ 344 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLR----KCPICRGIIKGTVRTFL 344 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGCS----BCTTTCCBCCEEEECC-
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcCC----cCCCCCCCccCeEEeec
Confidence 3578999999999999999999999999999884 99999999999999984
No 9
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=4.5e-09 Score=88.38 Aligned_cols=49 Identities=27% Similarity=0.674 Sum_probs=44.2
Q ss_pred ccccccccccccccCeEEeCCCCccccHHhHHHHhcCCCCCccccccccc
Q 002964 805 VRKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVE 854 (862)
Q Consensus 805 ~~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~ 854 (862)
.....|.||++...+.+++||||. ||..|+..+......||+||.+|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEE-EEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCCEEccCCCH-HHHHHHHHHHHCCCcCcCcCchhCH
Confidence 345789999999999999999999 9999999998777899999999864
No 10
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=3.6e-09 Score=88.23 Aligned_cols=54 Identities=28% Similarity=0.766 Sum_probs=48.2
Q ss_pred cccccccccccccCeEEeCCCCccccHHhHHHHhcCCCCCccccccccceeeeeec
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYSI 861 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~vIriy~V 861 (862)
....|.||++...+ +++||||. ||..|+..+......||+||.+|.....+|.+
T Consensus 14 ~~~~C~IC~~~~~~-~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 67 (70)
T 2ecn_A 14 DEEECCICMDGRAD-LILPCAHS-FCQKCIDKWSDRHRNCPICRLQMTGANESSGP 67 (70)
T ss_dssp CCCCCSSSCCSCCS-EEETTTEE-ECHHHHHHSSCCCSSCHHHHHCTTCCCCCCCC
T ss_pred CCCCCeeCCcCccC-cccCCCCc-ccHHHHHHHHHCcCcCCCcCCcccCCCccccC
Confidence 45789999999998 88999999 99999999988788999999999987777654
No 11
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=1.4e-08 Score=84.99 Aligned_cols=48 Identities=31% Similarity=0.721 Sum_probs=42.5
Q ss_pred cccccccccccccCeEEeCCCCccccHHhHHHHhc---CCCCCccccccccc
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVR---GGGKCPLCRAPIVE 854 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~---~~~~CPiCRa~I~~ 854 (862)
....|.||++...+.+++||||. ||..|+..+.. ....||+||++|..
T Consensus 19 ~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 19 EEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCBCTTTCSBCSSEEECTTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred cCCEeccCCcccCCeEEcCCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 46799999999999999999999 99999999985 35589999998864
No 12
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.71 E-value=5.1e-09 Score=86.72 Aligned_cols=52 Identities=27% Similarity=0.728 Sum_probs=46.0
Q ss_pred ccccccccccccC-eEEeCCCCccccHHhHHHHhcCCCCCccccccccceeeee
Q 002964 807 KGTCCVCCDSHID-SLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAY 859 (862)
Q Consensus 807 ~~~C~ICld~~~d-~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~vIriy 859 (862)
...|.||++...+ .+++||||. ||..|+..+......||+||+++..++..+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 57 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVHTI 57 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEECCC
T ss_pred CCCCeeCCccccCCcEecCCCCe-eHHHHHHHHHhCcCcCcCCChhhHhhhhcc
Confidence 4689999999888 488999999 999999999877789999999999877654
No 13
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=1.2e-08 Score=87.60 Aligned_cols=48 Identities=25% Similarity=0.629 Sum_probs=43.8
Q ss_pred cccccccccccccCeEEeCCCCccccHHhHHHHhcCCCCCccccccccc
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVE 854 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~ 854 (862)
....|.||++...+.+++||||. ||..|+..+......||+||.++..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVVTKCRHY-FCESCALEHFRATPRCYICDQPTGG 61 (81)
T ss_dssp CCSBCSSSCSBCCSEEECTTSCE-EEHHHHHHHHHHCSBCSSSCCBCCS
T ss_pred CCCCCcCCCchhcCeeEccCCCH-hHHHHHHHHHHCCCcCCCcCccccc
Confidence 45789999999999999999999 9999999998778899999999864
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.68 E-value=7.2e-09 Score=84.14 Aligned_cols=52 Identities=29% Similarity=0.724 Sum_probs=44.3
Q ss_pred ccccccccccccCe-------EEeCCCCccccHHhHHHHhcCCCCCcccccccc--ceeeee
Q 002964 807 KGTCCVCCDSHIDS-------LLYRCGHMCTCSKCANELVRGGGKCPLCRAPIV--EVIRAY 859 (862)
Q Consensus 807 ~~~C~ICld~~~d~-------vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~--~vIriy 859 (862)
...|.||++...+. ++++|||. ||..|+..+......||+||+++. .+.++|
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCE-EEHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCc-hhHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 46899999977654 78899999 999999999887889999999987 456665
No 15
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.66 E-value=6.3e-09 Score=86.49 Aligned_cols=53 Identities=28% Similarity=0.713 Sum_probs=44.5
Q ss_pred cccccccccccccCe-------EEeCCCCccccHHhHHHHhcCCCCCccccccccc--eeeee
Q 002964 806 RKGTCCVCCDSHIDS-------LLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVE--VIRAY 859 (862)
Q Consensus 806 ~~~~C~ICld~~~d~-------vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~--vIriy 859 (862)
....|.||++...+. ++++|||. ||..|+..+......||+||+++.. +.++|
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCCh-HhHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence 457899999987665 88999999 9999999998878899999999874 44444
No 16
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=9.7e-09 Score=84.57 Aligned_cols=48 Identities=29% Similarity=0.768 Sum_probs=41.9
Q ss_pred cccccccccccccCe-------EEeCCCCccccHHhHHHHhcCCCCCccccccccc
Q 002964 806 RKGTCCVCCDSHIDS-------LLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVE 854 (862)
Q Consensus 806 ~~~~C~ICld~~~d~-------vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~ 854 (862)
....|.||++...+. ++++|||. ||..|+..+......||+||.+|..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCE-EEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCCh-hcHHHHHHHHHcCCCCCCCCCccCc
Confidence 457899999987665 88999998 9999999998778899999998864
No 17
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=2.5e-08 Score=85.95 Aligned_cols=47 Identities=28% Similarity=0.754 Sum_probs=41.1
Q ss_pred cccccccccccccC----eEEeCCCCccccHHhHHHHhcCC---CCCcccccccc
Q 002964 806 RKGTCCVCCDSHID----SLLYRCGHMCTCSKCANELVRGG---GKCPLCRAPIV 853 (862)
Q Consensus 806 ~~~~C~ICld~~~d----~vllPCGH~c~C~~Ca~~L~~~~---~~CPiCRa~I~ 853 (862)
+...|.||++...+ .+++||||. ||..|+..+.... ..||+||.++.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHT-ICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCE-EEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred CCCCCccCCccccccCCCeEECCCCCh-hhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 45789999999888 899999999 9999999998654 68999999764
No 18
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.63 E-value=1.5e-08 Score=80.38 Aligned_cols=47 Identities=28% Similarity=0.769 Sum_probs=41.1
Q ss_pred ccccccccccccC----eEEeCCCCccccHHhHHHHhcCCCCCccccccccc
Q 002964 807 KGTCCVCCDSHID----SLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVE 854 (862)
Q Consensus 807 ~~~C~ICld~~~d----~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~ 854 (862)
...|.||++...+ .+++||||. ||..|+..+......||+||++|.+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~g 55 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHL-LHRTCYEEMLKEGYRCPLCSGPSSG 55 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCE-EETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCc-ccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 4689999998755 788999998 9999999998777899999998753
No 19
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.62 E-value=3.5e-08 Score=84.01 Aligned_cols=48 Identities=27% Similarity=0.654 Sum_probs=42.7
Q ss_pred cccccccccccccCeEEeCCCCccccHHhHHHHhcC------CCCCccccccccc
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRG------GGKCPLCRAPIVE 854 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~------~~~CPiCRa~I~~ 854 (862)
....|.||++...+.+++||||. ||..|+..+... ...||+||.++..
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSADCNHS-FCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCCSSCEECTTSCC-BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhhCcceeCCCCCH-HHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 46799999999999999999999 999999998765 6689999999863
No 20
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.62 E-value=2.4e-08 Score=83.06 Aligned_cols=50 Identities=24% Similarity=0.569 Sum_probs=42.5
Q ss_pred cccccccccccc---cCeEEeCCCCccccHHhHHHHhcCCCCCcccccccccee
Q 002964 806 RKGTCCVCCDSH---IDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVI 856 (862)
Q Consensus 806 ~~~~C~ICld~~---~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~vI 856 (862)
....|.||++.. ...+++||||. ||..|+..|......||+||++|...+
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCH-HHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 457899998755 45688999999 999999999887889999999987654
No 21
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=2.4e-08 Score=84.10 Aligned_cols=49 Identities=22% Similarity=0.501 Sum_probs=43.7
Q ss_pred cccccccccccccCeEEe-CCCCccccHHhHHHHhcCCCCCccccccccce
Q 002964 806 RKGTCCVCCDSHIDSLLY-RCGHMCTCSKCANELVRGGGKCPLCRAPIVEV 855 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vll-PCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~v 855 (862)
....|.||++...+.+.+ +|||. ||..|+..+......||+||.+|...
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECLHT-FCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSCCE-ECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCCChHHHCcCEECCCCCH-HHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 467999999999988877 99999 99999999987778999999998754
No 22
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=2.7e-08 Score=84.72 Aligned_cols=48 Identities=27% Similarity=0.668 Sum_probs=42.6
Q ss_pred cccccccccccccCeEEeCCCCccccHHhHHHHhcC------CCCCccccccccc
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRG------GGKCPLCRAPIVE 854 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~------~~~CPiCRa~I~~ 854 (862)
....|.||++...+.+++||||. ||..|...+... ...||+||.++..
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLSLDCGHS-FCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCSSCBCCSSSCC-BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccCCceeCCCCCH-HHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 46799999999999999999999 999999998755 6789999998873
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=4.5e-08 Score=80.99 Aligned_cols=48 Identities=29% Similarity=0.602 Sum_probs=42.5
Q ss_pred cccccccccccccCeEEeCCCCccccHHhHHHHh-cCCCCCccccccccc
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELV-RGGGKCPLCRAPIVE 854 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~-~~~~~CPiCRa~I~~ 854 (862)
....|.||++...+.+.++|||. ||..|+..+. .....||+||++|..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQTECGHR-FCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCEESSCCCCSSSCC-CCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCCCCCCChHhcCeeECCCCCH-HHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 45789999999999988999999 9999999998 456789999998864
No 24
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=3.7e-08 Score=82.93 Aligned_cols=52 Identities=23% Similarity=0.567 Sum_probs=42.9
Q ss_pred ccccccccccccc---CeEEeCCCCccccHHhHHHHhcCCCCCccccccccceeee
Q 002964 806 RKGTCCVCCDSHI---DSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRA 858 (862)
Q Consensus 806 ~~~~C~ICld~~~---d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~vIri 858 (862)
....|.||++... ...++||||. ||..|+..|......||+||.+|..+..+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHA-FHRKCLIKWLEVRKVCPLCNMPVLQLAQL 68 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEE-EEHHHHHHHHHHCSBCTTTCCBCSSCCSC
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCE-ecHHHHHHHHHcCCcCCCcCccccccccc
Confidence 4578999998754 3455699999 99999999988778999999999876543
No 25
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.52 E-value=4.9e-08 Score=86.26 Aligned_cols=48 Identities=23% Similarity=0.664 Sum_probs=41.8
Q ss_pred cccccccccccccC---eEEeCCCCccccHHhHHHHhcCCCCCccccccccc
Q 002964 806 RKGTCCVCCDSHID---SLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVE 854 (862)
Q Consensus 806 ~~~~C~ICld~~~d---~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~ 854 (862)
....|.||++.... ...+||||. ||..|+..|......||+||.+|..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEE-EEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCCh-HHHHHHHHHHHcCCcCcCcCccCCC
Confidence 45689999987766 778999998 9999999999888899999998764
No 26
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.52 E-value=4.4e-08 Score=90.66 Aligned_cols=48 Identities=23% Similarity=0.553 Sum_probs=42.3
Q ss_pred cccccccccccccCeEEeCCCCccccHHhHHHHhcCC-CCCccccccccc
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGG-GKCPLCRAPIVE 854 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~-~~CPiCRa~I~~ 854 (862)
....|+||++...+.+++||||. ||..|+..+.... ..||+||.++..
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEEeeCCCc-ccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 34689999999999999999999 9999999988643 489999999865
No 27
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.52 E-value=4.7e-08 Score=77.66 Aligned_cols=46 Identities=30% Similarity=0.699 Sum_probs=40.1
Q ss_pred ccccccccccccC---eEEeC-CCCccccHHhHHHHhcCCCCCcccccccc
Q 002964 807 KGTCCVCCDSHID---SLLYR-CGHMCTCSKCANELVRGGGKCPLCRAPIV 853 (862)
Q Consensus 807 ~~~C~ICld~~~d---~vllP-CGH~c~C~~Ca~~L~~~~~~CPiCRa~I~ 853 (862)
...|.||++...+ ...+| |||. ||..|+..+......||+||++|.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCcCccCCccccCCCceEECCCCCCc-ccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4689999988766 67777 9999 999999999988889999999864
No 28
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.52 E-value=5.7e-08 Score=82.59 Aligned_cols=49 Identities=20% Similarity=0.480 Sum_probs=41.0
Q ss_pred cccccccccccc---cCeEEeCCCCccccHHhHHHHhcCCCCCccccccccce
Q 002964 806 RKGTCCVCCDSH---IDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEV 855 (862)
Q Consensus 806 ~~~~C~ICld~~---~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~v 855 (862)
....|.||++.. ....++||||. ||..|+..|......||+||++|...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCE-EETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCe-ecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 457999997765 34467899998 99999999998888999999998753
No 29
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.50 E-value=5.4e-08 Score=86.54 Aligned_cols=48 Identities=23% Similarity=0.614 Sum_probs=43.4
Q ss_pred cccccccccccccCeEEe-CCCCccccHHhHHHHhcCCCCCccccccccc
Q 002964 806 RKGTCCVCCDSHIDSLLY-RCGHMCTCSKCANELVRGGGKCPLCRAPIVE 854 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vll-PCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~ 854 (862)
+...|.||++...+.+++ +|||. ||..|+..+......||+||.++..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHN-YCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCH-hhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 357899999999999888 89999 9999999999888899999998874
No 30
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.49 E-value=6.4e-08 Score=84.71 Aligned_cols=47 Identities=26% Similarity=0.637 Sum_probs=41.2
Q ss_pred cccccccccccccCeEEeC-CCCccccHHhHHHHhcC--CCCCcccccccc
Q 002964 806 RKGTCCVCCDSHIDSLLYR-CGHMCTCSKCANELVRG--GGKCPLCRAPIV 853 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllP-CGH~c~C~~Ca~~L~~~--~~~CPiCRa~I~ 853 (862)
....|.||++...+.+++| |||. ||..|+..+... ...||+||.++.
T Consensus 12 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEECSSCEECTTTCCE-ECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChhhcCceECCCCCCH-HHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4689999999999999999 9999 999999998753 358999999863
No 31
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.49 E-value=7.8e-08 Score=81.74 Aligned_cols=48 Identities=10% Similarity=0.238 Sum_probs=43.3
Q ss_pred cccccccccccccCeEEeCCCCccccHHhHHHHhcC-CCCCccccccccc
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRG-GGKCPLCRAPIVE 854 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~-~~~CPiCRa~I~~ 854 (862)
....|.||++...+.+.+||||. ||..|+..+... ...||+||.++..
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~-fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCccccccCCEEcCCCCe-ecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 45799999999999999999999 999999999876 6789999999864
No 32
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.49 E-value=7.2e-08 Score=81.87 Aligned_cols=47 Identities=26% Similarity=0.646 Sum_probs=41.6
Q ss_pred cccccccccccccCeEEeC-CCCccccHHhHHHHhcCC--CCCcccccccc
Q 002964 806 RKGTCCVCCDSHIDSLLYR-CGHMCTCSKCANELVRGG--GKCPLCRAPIV 853 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllP-CGH~c~C~~Ca~~L~~~~--~~CPiCRa~I~ 853 (862)
....|.||++...+.+.+| |||. ||..|+..+.... ..||+||+++.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 14 DELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp GGGSCSSSCCCCTTCEECSSSCCE-ECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCcCCChHHhCCeEcCCCCCH-HHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 4679999999999999999 9999 9999999998644 58999999754
No 33
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.47 E-value=4e-08 Score=83.24 Aligned_cols=48 Identities=25% Similarity=0.600 Sum_probs=40.8
Q ss_pred cccccccccccccC---eEEeCCCCccccHHhHHHHhcCCCCCccccccccc
Q 002964 806 RKGTCCVCCDSHID---SLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVE 854 (862)
Q Consensus 806 ~~~~C~ICld~~~d---~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~ 854 (862)
....|.||++.... +..+||||. ||..|+..|......||+||++|..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEE-EETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCH-hHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 45789999976544 377899999 9999999998878899999998864
No 34
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.47 E-value=3.7e-08 Score=83.41 Aligned_cols=48 Identities=25% Similarity=0.619 Sum_probs=42.1
Q ss_pred cccccccccccccCeEEeCCCCccccHHhHHHHhcC-------CCCCccccccccc
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRG-------GGKCPLCRAPIVE 854 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~-------~~~CPiCRa~I~~ 854 (862)
....|.||++...+.+++||||. ||..|+..+... ...||+||.++..
T Consensus 11 ~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEECSSCCCCSSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcccCCeeECCCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 45789999999999999999999 999999988765 5689999998853
No 35
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.47 E-value=5.9e-08 Score=87.17 Aligned_cols=48 Identities=27% Similarity=0.690 Sum_probs=42.7
Q ss_pred cccccccccccccCeEE-eCCCCccccHHhHHHHhcCC-CCCccccccccc
Q 002964 806 RKGTCCVCCDSHIDSLL-YRCGHMCTCSKCANELVRGG-GKCPLCRAPIVE 854 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vl-lPCGH~c~C~~Ca~~L~~~~-~~CPiCRa~I~~ 854 (862)
+...|.||++...+.++ ++|||. ||..|+..+.... ..||+||.++..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCccCCccccCccccCCCCCh-hhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 35789999999999999 999999 9999999998766 699999998753
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.46 E-value=1e-07 Score=86.23 Aligned_cols=48 Identities=23% Similarity=0.599 Sum_probs=43.6
Q ss_pred cccccccccccccCeEEe-CCCCccccHHhHHHHhcCCCCCccccccccc
Q 002964 806 RKGTCCVCCDSHIDSLLY-RCGHMCTCSKCANELVRGGGKCPLCRAPIVE 854 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vll-PCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~ 854 (862)
....|.||++...+.+.+ ||||. ||..|+..+......||+||.++..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHS-FCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhCcCEeCCCCCh-hhHHHHHHHHHhCCcCcCCCccccc
Confidence 457899999999999887 99999 9999999999878899999999874
No 37
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.45 E-value=9.3e-08 Score=105.64 Aligned_cols=51 Identities=27% Similarity=0.718 Sum_probs=45.4
Q ss_pred cccccccccccCeEEeCCCCccccHHhHHHHhc-CCCCCccccccccceeeee
Q 002964 808 GTCCVCCDSHIDSLLYRCGHMCTCSKCANELVR-GGGKCPLCRAPIVEVIRAY 859 (862)
Q Consensus 808 ~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~-~~~~CPiCRa~I~~vIriy 859 (862)
..|+||++...+++++||||. ||..|+..+.. ....||+||++|.....++
T Consensus 333 ~~C~ICle~~~~pv~lpCGH~-FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~ 384 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 384 (389)
T ss_dssp SBCTTTSSSBCCEEEETTCCE-ECHHHHHHHHHHTCSBCTTTCCBCCEEEECS
T ss_pred CCCCccCcCCCCeEEeCCCCh-hhHHHHHHHHhcCCCCCCCCCCccCCceeEe
Confidence 589999999999999999999 89999999876 5789999999998866543
No 38
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=2.1e-07 Score=76.09 Aligned_cols=42 Identities=36% Similarity=0.776 Sum_probs=37.8
Q ss_pred cccccccccccccCeEEeCCCCccccHHhHHHHhc---CCCCCccc
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVR---GGGKCPLC 848 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~---~~~~CPiC 848 (862)
....|.||++...+.+++||||. ||..|+..+.. ....||+|
T Consensus 19 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSSCEECTTSSE-ECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhCCeEEeCCCCc-chHHHHHHHHHcCCCCCcCcCC
Confidence 46799999999999999999999 99999999986 45589998
No 39
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.42 E-value=1.1e-07 Score=91.99 Aligned_cols=48 Identities=21% Similarity=0.549 Sum_probs=42.6
Q ss_pred cccccccccccccCeEEeCCCCccccHHhHHHHhcCCC-CCccccccccc
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGG-KCPLCRAPIVE 854 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~~-~CPiCRa~I~~ 854 (862)
....|+||++...+.+++||||. ||..|+..+..... .||+||.++..
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHN-VCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCEeecCChhhcCCEEcCCCCc-hhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 35789999999999999999999 99999999986544 89999999875
No 40
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.42 E-value=1.1e-07 Score=78.34 Aligned_cols=47 Identities=30% Similarity=0.790 Sum_probs=37.7
Q ss_pred ccccccccc-cccCe----EEeCCCCccccHHhHHHHhc-CCCCCccccccccc
Q 002964 807 KGTCCVCCD-SHIDS----LLYRCGHMCTCSKCANELVR-GGGKCPLCRAPIVE 854 (862)
Q Consensus 807 ~~~C~ICld-~~~d~----vllPCGH~c~C~~Ca~~L~~-~~~~CPiCRa~I~~ 854 (862)
+..|.||++ ...+. ++++|||. ||..|+..+.. ....||+||.++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCH-hHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 468999999 44333 56899999 99999999954 44689999999864
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.40 E-value=1e-07 Score=85.81 Aligned_cols=47 Identities=26% Similarity=0.691 Sum_probs=41.2
Q ss_pred ccccccccccccCeEEeCCCCccccHHhHHHHhcCC---CCCccccccccc
Q 002964 807 KGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGG---GKCPLCRAPIVE 854 (862)
Q Consensus 807 ~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~---~~CPiCRa~I~~ 854 (862)
...|.||++...+.+++||||. ||..|+..+.... ..||+||.++..
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeEECCCCCH-HHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 3589999999999999999999 9999999998654 389999998864
No 42
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.39 E-value=3.3e-07 Score=82.96 Aligned_cols=49 Identities=8% Similarity=0.024 Sum_probs=44.7
Q ss_pred ccccccccccccccCeEEeCCC-CccccHHhHHHHhcCCCCCccccccccc
Q 002964 805 VRKGTCCVCCDSHIDSLLYRCG-HMCTCSKCANELVRGGGKCPLCRAPIVE 854 (862)
Q Consensus 805 ~~~~~C~ICld~~~d~vllPCG-H~c~C~~Ca~~L~~~~~~CPiCRa~I~~ 854 (862)
.....|+||++-..+.+++||| |. ||..|+..+.....+||+|+.++..
T Consensus 20 p~~~~CpI~~~~m~dPV~~~cG~ht-f~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVLPSSRVT-VDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCCeECCCCCeE-ECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 4578999999999999999999 99 9999999999777899999998764
No 43
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.39 E-value=1.7e-07 Score=90.75 Aligned_cols=47 Identities=28% Similarity=0.681 Sum_probs=41.8
Q ss_pred cccccccccccccCeEEe-CCCCccccHHhHHHHhcC-CCCCcccccccc
Q 002964 806 RKGTCCVCCDSHIDSLLY-RCGHMCTCSKCANELVRG-GGKCPLCRAPIV 853 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vll-PCGH~c~C~~Ca~~L~~~-~~~CPiCRa~I~ 853 (862)
....|+||++...+.+.+ ||||. ||..|+..+... ...||+||.+|.
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcccChHhhCcCEeCCCCCh-hHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 356899999999999887 99999 999999999875 678999999985
No 44
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.39 E-value=1.2e-07 Score=82.64 Aligned_cols=54 Identities=28% Similarity=0.623 Sum_probs=42.7
Q ss_pred cccccccccccc--cCeEEeC--CCCccccHHhHHHHhc-CCCCCccccccccceeeeee
Q 002964 806 RKGTCCVCCDSH--IDSLLYR--CGHMCTCSKCANELVR-GGGKCPLCRAPIVEVIRAYS 860 (862)
Q Consensus 806 ~~~~C~ICld~~--~d~vllP--CGH~c~C~~Ca~~L~~-~~~~CPiCRa~I~~vIriy~ 860 (862)
+...|+||++.. .+..++| |||. ||..|...++. ....||+||.++......|.
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~-fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~ 68 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPEDPAVYK 68 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCC-CCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCC
T ss_pred cCCcCCccCccCccccccccccCCCCC-cCHHHHHHHHhcCCCCCCCCCCccCCCchhhc
Confidence 457899999976 3456776 9999 99999999874 35689999999987555544
No 45
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.36 E-value=1.9e-07 Score=84.76 Aligned_cols=47 Identities=23% Similarity=0.538 Sum_probs=38.2
Q ss_pred ccccccccccccC------------------eEEeCCCCccccHHhHHHHh-----cCCCCCccccccccc
Q 002964 807 KGTCCVCCDSHID------------------SLLYRCGHMCTCSKCANELV-----RGGGKCPLCRAPIVE 854 (862)
Q Consensus 807 ~~~C~ICld~~~d------------------~vllPCGH~c~C~~Ca~~L~-----~~~~~CPiCRa~I~~ 854 (862)
...|.||++.... ..++||||. ||..|+..|. .....||+||+.+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCc-ccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 3589999987643 237899999 9999999998 345689999998754
No 46
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.33 E-value=9.1e-08 Score=87.27 Aligned_cols=48 Identities=23% Similarity=0.672 Sum_probs=42.4
Q ss_pred cccccccccccccCeEEeCCCCccccHHhHHHHhcC-CCCCccccccccc
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRG-GGKCPLCRAPIVE 854 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~-~~~CPiCRa~I~~ 854 (862)
....|.||++...+.+.+||||. ||..|+..+... ...||+||.++..
T Consensus 14 ~~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSSCEECTTSCE-ECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCceeEcCCCCH-HhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 45789999999999999999999 999999998754 5689999998864
No 47
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=3.8e-07 Score=72.84 Aligned_cols=42 Identities=26% Similarity=0.759 Sum_probs=37.1
Q ss_pred cccccccccccccCeEEeCCCCccccHHhHHHHh---cCCCCCccc
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELV---RGGGKCPLC 848 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~---~~~~~CPiC 848 (862)
....|.||++...+.+++||||. ||..|+..+. .....||+|
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVIIECGHN-FCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCCCSSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCccEeCCCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence 45789999999999999999999 9999999994 345789998
No 48
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.31 E-value=9.9e-07 Score=90.03 Aligned_cols=49 Identities=12% Similarity=0.048 Sum_probs=42.8
Q ss_pred ccccccccccccccCeEEeCCCCccccHHhHHHHhcCC-CCCccccccccc
Q 002964 805 VRKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGG-GKCPLCRAPIVE 854 (862)
Q Consensus 805 ~~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~-~~CPiCRa~I~~ 854 (862)
.....|+||++-..+.+++||||. ||..|+..+...+ ..||+|+.++..
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~-f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCCeECCCCCE-ECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 356789999999999999999999 9999999988653 459999999863
No 49
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.27 E-value=3.2e-07 Score=84.41 Aligned_cols=48 Identities=29% Similarity=0.664 Sum_probs=42.6
Q ss_pred cccccccccccccCeEEeCCCCccccHHhHHHHhcCCC-CCccccccccc
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGG-KCPLCRAPIVE 854 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~~-~CPiCRa~I~~ 854 (862)
....|.||++...+.+.++|||. ||..|+..+..... .||+||.++..
T Consensus 17 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 17 SKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCcCChhhcCeEECCcCCh-hhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 45799999999999999999999 99999999876544 99999999875
No 50
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.26 E-value=1.4e-07 Score=76.54 Aligned_cols=45 Identities=31% Similarity=0.623 Sum_probs=39.0
Q ss_pred cccccccccccccCeEEeCCCCccccHHhHHHHhcCCCCCccccccccc
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVE 854 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~ 854 (862)
+...|.||++...+.+++||||. ||..|+.. ....||+||+++..
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~---~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHT-LCSGCLEA---SGMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCC-SBTTTCSS---SSSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCCeEEcCCCCc-ccHHHHcc---CCCCCCcCCcEeec
Confidence 45789999999999999999999 99999876 34689999998763
No 51
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.25 E-value=6.3e-07 Score=78.76 Aligned_cols=49 Identities=10% Similarity=-0.034 Sum_probs=44.5
Q ss_pred ccccccccccccccCeEEeCCCCccccHHhHHHHhcCCCCCccccccccc
Q 002964 805 VRKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVE 854 (862)
Q Consensus 805 ~~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~ 854 (862)
.....|+||++-..+.+++||||. ||..|+..+.....+||+|+.++..
T Consensus 12 p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCCeECCCCCE-ECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 356899999999999999999999 9999999998777899999998764
No 52
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.24 E-value=4.6e-07 Score=82.76 Aligned_cols=48 Identities=27% Similarity=0.656 Sum_probs=43.0
Q ss_pred cccccccccccccCeEEeCCCCccccHHhHHHHhcC-CCCCccccccccc
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRG-GGKCPLCRAPIVE 854 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~-~~~CPiCRa~I~~ 854 (862)
....|+||++...+.+.++|||. ||..|+..+... ...||+||.++..
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcCcEEcCCCCc-ccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 45789999999999999999999 999999998865 6789999999864
No 53
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.23 E-value=9.4e-07 Score=80.25 Aligned_cols=49 Identities=10% Similarity=-0.011 Sum_probs=44.8
Q ss_pred ccccccccccccccCeEEeCCCCccccHHhHHHHhcCCCCCccccccccc
Q 002964 805 VRKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVE 854 (862)
Q Consensus 805 ~~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~ 854 (862)
.....|+||++-..+.+++||||. ||..|+..+.....+||+|+.++..
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEE-EEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCCeECCCCCE-EchHHHHHHHHcCCCCCCCCCCCCh
Confidence 456899999999999999999999 9999999999878899999998764
No 54
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=8.4e-07 Score=77.01 Aligned_cols=48 Identities=27% Similarity=0.674 Sum_probs=38.3
Q ss_pred cccccccccccccC--------------eEEe-CCCCccccHHhHHHHhcCCCCCccccccccc
Q 002964 806 RKGTCCVCCDSHID--------------SLLY-RCGHMCTCSKCANELVRGGGKCPLCRAPIVE 854 (862)
Q Consensus 806 ~~~~C~ICld~~~d--------------~vll-PCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~ 854 (862)
....|.||++...+ .+.+ +|||. ||..|+..+......||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHS-FHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCE-EEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCc-cChHHHHHHHHhCCCCCCcCCCcch
Confidence 45678888876644 3344 59999 9999999999888899999998753
No 55
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.20 E-value=5.4e-07 Score=82.40 Aligned_cols=48 Identities=29% Similarity=0.768 Sum_probs=42.5
Q ss_pred cccccccccccccCe-------EEeCCCCccccHHhHHHHhcCCCCCccccccccc
Q 002964 806 RKGTCCVCCDSHIDS-------LLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVE 854 (862)
Q Consensus 806 ~~~~C~ICld~~~d~-------vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~ 854 (862)
+...|.||++...+. ++++|||. ||..|+..+......||+||+++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCE-EEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCCh-hhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 346899999987776 89999998 9999999999888899999998874
No 56
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.11 E-value=1e-06 Score=80.52 Aligned_cols=53 Identities=28% Similarity=0.713 Sum_probs=45.2
Q ss_pred cccccccccccccCe-------EEeCCCCccccHHhHHHHhcCCCCCccccccccc--eeeee
Q 002964 806 RKGTCCVCCDSHIDS-------LLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVE--VIRAY 859 (862)
Q Consensus 806 ~~~~C~ICld~~~d~-------vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~--vIriy 859 (862)
....|.||++..... +.++|||. ||..|+..+....+.||+||++|.. ++++|
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBE-EEHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCCh-hhHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 457899999877654 88899999 9999999999888899999999874 56665
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.09 E-value=5.9e-07 Score=82.52 Aligned_cols=45 Identities=24% Similarity=0.708 Sum_probs=40.4
Q ss_pred cccccccccccccCeEEe-CCCCccccHHhHHHHhcCCCCCcccccccc
Q 002964 806 RKGTCCVCCDSHIDSLLY-RCGHMCTCSKCANELVRGGGKCPLCRAPIV 853 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vll-PCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~ 853 (862)
....|+||++...+.+++ ||||. ||..|+..+.. ..||+||.++.
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHI-FCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCccEeCCCCCH-HHHHHHHHHhc--CCCcCCCCcCc
Confidence 357899999999999998 99999 99999999875 68999999884
No 58
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.08 E-value=1e-06 Score=84.33 Aligned_cols=46 Identities=26% Similarity=0.587 Sum_probs=41.1
Q ss_pred cccccccccccccCeEEeCCCCccccHHhHHHHhcCCC-CCccccccc
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGG-KCPLCRAPI 852 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~~-~CPiCRa~I 852 (862)
....|.||++...+.+.++|||. ||..|+..+..... .||+||.+|
T Consensus 30 ~~~~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 30 AKYLCSACRNVLRRPFQAQCGHR-YCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCcCCCCCChhhcCcEECCCCCc-cCHHHHHHHHhcCCCCCCCCCCcc
Confidence 46799999999999999999999 99999999986544 899999975
No 59
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.03 E-value=7e-06 Score=82.24 Aligned_cols=49 Identities=12% Similarity=0.038 Sum_probs=43.0
Q ss_pred ccccccccccccccCeEEeCCCCccccHHhHHHHhcCC-CCCccccccccc
Q 002964 805 VRKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGG-GKCPLCRAPIVE 854 (862)
Q Consensus 805 ~~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~-~~CPiCRa~I~~ 854 (862)
.....|+||++-..+.+++||||. ||..|+..+.... ..||+|+.++..
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ght-fer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCCCeECCCCCE-ECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 456899999999999999999999 9999999998653 469999998764
No 60
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.97 E-value=4.7e-06 Score=76.67 Aligned_cols=46 Identities=20% Similarity=0.430 Sum_probs=38.8
Q ss_pred cccccccccccccC------------------eEEeCCCCccccHHhHHHHhcCCCCCccccccc
Q 002964 806 RKGTCCVCCDSHID------------------SLLYRCGHMCTCSKCANELVRGGGKCPLCRAPI 852 (862)
Q Consensus 806 ~~~~C~ICld~~~d------------------~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I 852 (862)
....|.||++.... .++++|||. ||..|+..+......||+||+++
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcE-ECHHHHHHHHHcCCcCcCCCCcc
Confidence 45789999876543 466899999 99999999998888999999985
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.88 E-value=5.4e-06 Score=80.43 Aligned_cols=48 Identities=29% Similarity=0.651 Sum_probs=42.5
Q ss_pred cccccccccccccCeEEeCCCCccccHHhHHHHhcC-CCCCccccccccc
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRG-GGKCPLCRAPIVE 854 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~-~~~CPiCRa~I~~ 854 (862)
....|.||++...+.+.++|||. ||..|+..+... ...||+||.+|..
T Consensus 17 ~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 17 SKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCChhhcCcEECCCCCH-HHHHHHHHHHHhCCCCCCCCccCcch
Confidence 46799999999999999999999 999999998754 3499999998875
No 62
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.85 E-value=6.3e-06 Score=73.46 Aligned_cols=52 Identities=17% Similarity=0.396 Sum_probs=42.3
Q ss_pred cccccccccccccCeEEeC-CCCccccHHhHHHHhcCC------CCCcc--cccc---ccceeee
Q 002964 806 RKGTCCVCCDSHIDSLLYR-CGHMCTCSKCANELVRGG------GKCPL--CRAP---IVEVIRA 858 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllP-CGH~c~C~~Ca~~L~~~~------~~CPi--CRa~---I~~vIri 858 (862)
....|+||++...+.+.+| |||. ||..|+..+.... .+||+ |+.. ...++..
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~-f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn 69 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHT-YEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQD 69 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCE-EEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEEC
T ss_pred cEeECcCcCchhcCCEEcCCCCCe-ecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCC
Confidence 4578999999999999997 9999 9999999998542 48999 9854 3445543
No 63
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.62 E-value=8.7e-06 Score=76.44 Aligned_cols=46 Identities=20% Similarity=0.430 Sum_probs=0.9
Q ss_pred cccccccccccccC------------------eEEeCCCCccccHHhHHHHhcCCCCCccccccc
Q 002964 806 RKGTCCVCCDSHID------------------SLLYRCGHMCTCSKCANELVRGGGKCPLCRAPI 852 (862)
Q Consensus 806 ~~~~C~ICld~~~d------------------~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I 852 (862)
....|.||++...+ .++++|+|. ||..|+..+......||+||+++
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCce-EcHHHHHHHHHcCCcCCCCCCee
Confidence 34799999977543 233589999 99999999988888999999975
No 64
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.00055 Score=72.42 Aligned_cols=49 Identities=20% Similarity=0.456 Sum_probs=41.5
Q ss_pred ccccccccccccccCeEEe-CCCCccccHHhHHHHhcCC--CCCcc--ccccccc
Q 002964 805 VRKGTCCVCCDSHIDSLLY-RCGHMCTCSKCANELVRGG--GKCPL--CRAPIVE 854 (862)
Q Consensus 805 ~~~~~C~ICld~~~d~vll-PCGH~c~C~~Ca~~L~~~~--~~CPi--CRa~I~~ 854 (862)
.....|+||++...+.+.. .|||. ||..|+..++... ..||+ |+..+..
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CGHs-FcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCNHV-FDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSCCE-EEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ceeeECcCccCcccCCeeeCCCCCc-ccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 3467899999999999975 99998 9999999998653 47999 9997653
No 65
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.27 E-value=0.00022 Score=65.59 Aligned_cols=49 Identities=24% Similarity=0.529 Sum_probs=37.8
Q ss_pred cccccccccc-CeEEeCCCCccccHHhHHHHhc-CCCCCccccccccceeee
Q 002964 809 TCCVCCDSHI-DSLLYRCGHMCTCSKCANELVR-GGGKCPLCRAPIVEVIRA 858 (862)
Q Consensus 809 ~C~ICld~~~-d~vllPCGH~c~C~~Ca~~L~~-~~~~CPiCRa~I~~vIri 858 (862)
.|.+|--... -..++||+|+ ||+.|+..+.. ..+.||+|+.+|..+-..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHv-FCydCa~~~~~~~~k~Cp~C~~~V~rVe~~ 53 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHV-FCYDCAILHEKKGDKMCPGCSDPVQRIEQC 53 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCE-EEHHHHHHHHHTTCCBCTTTCCBCSEEEEE
T ss_pred ecCccCCCeEEEeeecccccc-HHHHHHHHHHhccCCCCcCcCCeeeeeEEe
Confidence 4777744332 3378899997 99999999864 467899999999887654
No 66
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.26 E-value=0.00013 Score=64.00 Aligned_cols=48 Identities=19% Similarity=0.562 Sum_probs=38.4
Q ss_pred cccccccccccc--cCeEEeCCC-----CccccHHhHHHHhcCC--CCCccccccccc
Q 002964 806 RKGTCCVCCDSH--IDSLLYRCG-----HMCTCSKCANELVRGG--GKCPLCRAPIVE 854 (862)
Q Consensus 806 ~~~~C~ICld~~--~d~vllPCG-----H~c~C~~Ca~~L~~~~--~~CPiCRa~I~~ 854 (862)
....|.||++.. .+.+++||+ |. |...|+..|.... ..||+||..+.-
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~-fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHF-VHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCC-EETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCe-eCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 346899999654 345778996 99 9999999998654 489999998754
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.19 E-value=0.00012 Score=64.69 Aligned_cols=44 Identities=20% Similarity=0.508 Sum_probs=33.9
Q ss_pred ccccccccccccCeEE---eCCCCccccHHhHHHHhcC--------CCCCcc--cccc
Q 002964 807 KGTCCVCCDSHIDSLL---YRCGHMCTCSKCANELVRG--------GGKCPL--CRAP 851 (862)
Q Consensus 807 ~~~C~ICld~~~d~vl---lPCGH~c~C~~Ca~~L~~~--------~~~CPi--CRa~ 851 (862)
...|.||++......+ .+|||. ||..|....... ...||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~-FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCc-ccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4689999987654433 379999 999999887642 237999 9987
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.13 E-value=0.00019 Score=59.82 Aligned_cols=46 Identities=13% Similarity=0.244 Sum_probs=41.9
Q ss_pred cccccccccccCeEEe-CCCCccccHHhHHHHhcCCCCCccccccccc
Q 002964 808 GTCCVCCDSHIDSLLY-RCGHMCTCSKCANELVRGGGKCPLCRAPIVE 854 (862)
Q Consensus 808 ~~C~ICld~~~d~vll-PCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~ 854 (862)
..|+||++-..+.++. +|||. ||..|+.++....++||+++.++..
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~-yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred EEecCCCCCCCCCEEeCCCCcE-EcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 6899999999999999 89999 9999999998777789999998854
No 69
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.53 E-value=0.01 Score=51.64 Aligned_cols=48 Identities=19% Similarity=0.439 Sum_probs=38.6
Q ss_pred ccccccccccccCeEEe-CCCCccccHHhHHHHhcCC--CCCccccccccce
Q 002964 807 KGTCCVCCDSHIDSLLY-RCGHMCTCSKCANELVRGG--GKCPLCRAPIVEV 855 (862)
Q Consensus 807 ~~~C~ICld~~~d~vll-PCGH~c~C~~Ca~~L~~~~--~~CPiCRa~I~~v 855 (862)
...|.||++........ .|+|. |-..|+.++.... .+||+|++.....
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~-fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCE-ECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCcCcchhhHcccCCccCCCCch-hhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 46899999877644333 79999 9999999998766 7899999987643
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=95.12 E-value=0.012 Score=48.97 Aligned_cols=48 Identities=15% Similarity=0.386 Sum_probs=36.9
Q ss_pred cccccccccccccCeEEeCCCCc----cccHHhHHHHhcC--CCCCcccccccc
Q 002964 806 RKGTCCVCCDSHIDSLLYRCGHM----CTCSKCANELVRG--GGKCPLCRAPIV 853 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCGH~----c~C~~Ca~~L~~~--~~~CPiCRa~I~ 853 (862)
....|.||++...+..++||.+. .+-..|+..|... ...||+|+.++.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 34689999987666678897652 2788999999753 568999998764
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=94.99 E-value=0.0048 Score=67.75 Aligned_cols=48 Identities=23% Similarity=0.558 Sum_probs=36.5
Q ss_pred cccccccccccccC-e-------EEeCCCCccccHHhHHHHhcC-----------CCCCccccccccc
Q 002964 806 RKGTCCVCCDSHID-S-------LLYRCGHMCTCSKCANELVRG-----------GGKCPLCRAPIVE 854 (862)
Q Consensus 806 ~~~~C~ICld~~~d-~-------vllPCGH~c~C~~Ca~~L~~~-----------~~~CPiCRa~I~~ 854 (862)
....|.|||....+ . ...+|||. |...|..+|... .+.||.||++|..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~-FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLK-CHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCC-BCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCc-cchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 45789999975544 1 12379999 999999998753 1579999999874
No 72
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.69 E-value=0.011 Score=54.06 Aligned_cols=50 Identities=26% Similarity=0.680 Sum_probs=41.5
Q ss_pred cccccccccccccCeEEeCCC-CccccHHhHHHHhcCCCCCccccccccceeee
Q 002964 806 RKGTCCVCCDSHIDSLLYRCG-HMCTCSKCANELVRGGGKCPLCRAPIVEVIRA 858 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllPCG-H~c~C~~Ca~~L~~~~~~CPiCRa~I~~vIri 858 (862)
....|..|+-.... ++.|. |. +|..|...|...+..||||..++...+++
T Consensus 27 G~~nCKsCWf~~k~--LV~C~dHY-LCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 27 GPQFCKSCWFENKG--LVECNNHY-LCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCCCCSSCSCCSS--EEECSSCE-EEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred CcccChhhccccCC--eeeecchh-hHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 45689999988885 45666 77 99999999999999999999998876654
No 73
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=86.59 E-value=0.49 Score=49.08 Aligned_cols=47 Identities=19% Similarity=0.466 Sum_probs=37.8
Q ss_pred ccccccccccccCeEEeC-CCCccccHHhHHHHhcCC--CCCccccccccc
Q 002964 807 KGTCCVCCDSHIDSLLYR-CGHMCTCSKCANELVRGG--GKCPLCRAPIVE 854 (862)
Q Consensus 807 ~~~C~ICld~~~d~vllP-CGH~c~C~~Ca~~L~~~~--~~CPiCRa~I~~ 854 (862)
...|.||++...-....+ |+|. |-..|...+.... ..||.|+.+...
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~-~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCE-ECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChH-HHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 468999998877665555 8998 9999999987653 489999987654
No 74
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=75.29 E-value=18 Score=33.97 Aligned_cols=89 Identities=20% Similarity=0.375 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCccCCccCccccccc-ccccccccc
Q 002964 736 WEMINDLRADMARLHQGMSHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGEQGMVAMTSEDGSKWAHV-RKGTCCVCC 814 (862)
Q Consensus 736 le~I~DLR~ema~LqeEmseLrk~vkacmemQ~eLQRsIrqEVsaAL~rs~g~~~~a~e~sdD~sk~~~~-~~~~C~ICl 814 (862)
++......+++..|+.++.+|++.+........++-+.. +.+....... ....|... ....|.+|.
T Consensus 10 ~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~-~~lq~~~~~~------------~~~~W~~d~~~~~C~~C~ 76 (125)
T 1joc_A 10 LERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGREN-QSLQIKHTQA------------LNRKWAEDNEVQNCMACG 76 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH------------HHCCCCCGGGCCBCTTTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccccccccc------------CCCccccCCCCCCCcCcC
Confidence 466667777788888888888877754433333222110 0000000000 00122222 235799998
Q ss_pred ccccCe----EEeCCCCccccHHhHHHH
Q 002964 815 DSHIDS----LLYRCGHMCTCSKCANEL 838 (862)
Q Consensus 815 d~~~d~----vllPCGH~c~C~~Ca~~L 838 (862)
....-. -.-.||+. ||..|....
T Consensus 77 ~~Fs~~~RrHHCR~CG~v-fC~~Cs~~~ 103 (125)
T 1joc_A 77 KGFSVTVRRHHCRQCGNI-FCAECSAKN 103 (125)
T ss_dssp CBCCSSSCCEECTTTCCE-ECGGGSCEE
T ss_pred CccccccccccCCCCCeE-EChHHhCCc
Confidence 765421 22359998 999998653
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=74.45 E-value=1.2 Score=39.22 Aligned_cols=31 Identities=23% Similarity=0.510 Sum_probs=24.7
Q ss_pred cccccccccc-ccCeEE--eCCCCccccHHhHHHH
Q 002964 807 KGTCCVCCDS-HIDSLL--YRCGHMCTCSKCANEL 838 (862)
Q Consensus 807 ~~~C~ICld~-~~d~vl--lPCGH~c~C~~Ca~~L 838 (862)
+..|.||.+. ...++. +.|+|. ||..|...+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~-~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEE-ECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChH-HhHHHCHHH
Confidence 4689999964 445555 899999 999999984
No 76
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=70.57 E-value=1.6 Score=39.11 Aligned_cols=33 Identities=24% Similarity=0.667 Sum_probs=27.5
Q ss_pred ccccccccccccCeEEeCC----CCccccHHhHHHHhc
Q 002964 807 KGTCCVCCDSHIDSLLYRC----GHMCTCSKCANELVR 840 (862)
Q Consensus 807 ~~~C~ICld~~~d~vllPC----GH~c~C~~Ca~~L~~ 840 (862)
...|.+|.+...++-|+-| +|. ||+.|.....+
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~Hk-FCFpCsr~sIk 51 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHK-FCFPCSRESIK 51 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCE-ECHHHHHHHHH
T ss_pred eeEeecchhhhccCceeeCCCccCCe-eeccccHHHHH
Confidence 4689999999999888877 477 99999987653
No 77
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=60.36 E-value=1.6 Score=47.07 Aligned_cols=46 Identities=24% Similarity=0.503 Sum_probs=37.3
Q ss_pred cccccccccccccCeEEeC----CCC-ccccHHhHHHHhcCCCCCcccccc
Q 002964 806 RKGTCCVCCDSHIDSLLYR----CGH-MCTCSKCANELVRGGGKCPLCRAP 851 (862)
Q Consensus 806 ~~~~C~ICld~~~d~vllP----CGH-~c~C~~Ca~~L~~~~~~CPiCRa~ 851 (862)
....|+||-..+.-.++.. =|+ .+.|.-|...|.....+||.|...
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4689999999998776652 343 358999999998888899999986
No 78
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=54.74 E-value=37 Score=28.26 Aligned_cols=41 Identities=22% Similarity=0.376 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002964 737 EMINDLRADMARLHQGMSHMQRMLEACMDMQLELQRSVRQE 777 (862)
Q Consensus 737 e~I~DLR~ema~LqeEmseLrk~vkacmemQ~eLQRsIrqE 777 (862)
+.++.||.++..|+++...|++.++.--.+...|++.|+.-
T Consensus 10 DtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 10 DTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999998888888877666777777776553
No 79
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=52.34 E-value=34 Score=42.25 Aligned_cols=50 Identities=10% Similarity=0.023 Sum_probs=44.3
Q ss_pred ccccccccccccccCeEEeCCCCccccHHhHHHHhcCCCCCccccccccc
Q 002964 805 VRKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVE 854 (862)
Q Consensus 805 ~~~~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~ 854 (862)
++...|+|-++-..+.+++|.||..+-..++..+....++||+-|.++..
T Consensus 889 P~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp CGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred cHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 45689999999999999999997668999999998778899999998864
No 80
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=42.38 E-value=20 Score=35.06 Aligned_cols=45 Identities=18% Similarity=0.499 Sum_probs=29.8
Q ss_pred cccccccccccc-----cCeEEeCCCCccccHHhHHHHhc-CCCCCcccccc
Q 002964 806 RKGTCCVCCDSH-----IDSLLYRCGHMCTCSKCANELVR-GGGKCPLCRAP 851 (862)
Q Consensus 806 ~~~~C~ICld~~-----~d~vllPCGH~c~C~~Ca~~L~~-~~~~CPiCRa~ 851 (862)
....|.+|.... ...+...|.|. +|..|...... ..-.|-+|...
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~-VC~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLF-VCKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCE-ECGGGEECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCch-hhcccccccCCCCcEeeHHHHHH
Confidence 457899999863 33355668888 79999843321 12368888754
No 81
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=37.45 E-value=23 Score=39.28 Aligned_cols=46 Identities=17% Similarity=0.327 Sum_probs=30.3
Q ss_pred cccccccccccccCe-EEeCCCCccccHHhH--HHHhc--CCCCCccccccc
Q 002964 806 RKGTCCVCCDSHIDS-LLYRCGHMCTCSKCA--NELVR--GGGKCPLCRAPI 852 (862)
Q Consensus 806 ~~~~C~ICld~~~d~-vllPCGH~c~C~~Ca--~~L~~--~~~~CPiCRa~I 852 (862)
-...|+|-+...... -...|.|+ -|+.-. ..+.. ..-.||+|...+
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~Hl-QCFDl~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHL-QCFDALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSS-CCEEHHHHHHHHHHSCCCBCTTTCCBC
T ss_pred EeecCCCccccccccCcCCcCCCc-ceECHHHHHHHhhcCCceeCCCCCccc
Confidence 357899888766554 45579998 354443 33332 345899999876
No 82
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=34.62 E-value=1.1e+02 Score=25.97 Aligned_cols=40 Identities=23% Similarity=0.401 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHH
Q 002964 737 EMINDLRADMARLHQGMSHMQRMLEACMDMQLELQRSVRQ 776 (862)
Q Consensus 737 e~I~DLR~ema~LqeEmseLrk~vkacmemQ~eLQRsIrq 776 (862)
+.++.|+.++..|+++...|.+.++.--.+...+++.++.
T Consensus 7 DtVYalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk 46 (61)
T 3l4f_A 7 DTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRK 46 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999877777776666676777776654
No 83
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=32.08 E-value=32 Score=37.98 Aligned_cols=46 Identities=17% Similarity=0.254 Sum_probs=30.4
Q ss_pred ccccccccccccCe-EEeCCCCccccHHhHHH--Hhc--CCCCCcccccccc
Q 002964 807 KGTCCVCCDSHIDS-LLYRCGHMCTCSKCANE--LVR--GGGKCPLCRAPIV 853 (862)
Q Consensus 807 ~~~C~ICld~~~d~-vllPCGH~c~C~~Ca~~--L~~--~~~~CPiCRa~I~ 853 (862)
...|+|-+...... -...|.|+ -|+.-..- +.. ..-.||+|.+.+.
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~Hl-qCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHL-QCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCC-CCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCccceeccCCcCCCCCCC-ccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 46899888766554 45579998 45544433 332 2458999998774
No 84
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=31.47 E-value=31 Score=28.88 Aligned_cols=40 Identities=25% Similarity=0.568 Sum_probs=30.7
Q ss_pred cccccccccccCeEEe---CCCCccccHHhHHHHhcCCCCCccc
Q 002964 808 GTCCVCCDSHIDSLLY---RCGHMCTCSKCANELVRGGGKCPLC 848 (862)
Q Consensus 808 ~~C~ICld~~~d~vll---PCGH~c~C~~Ca~~L~~~~~~CPiC 848 (862)
..|-.|.....+...+ .|++. ||..|-.-+-..-..||.|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~-FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNV-FCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCC-BCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcC-cccchhHHHHhhccCCcCC
Confidence 3588888776554434 47787 9999998887777799998
No 85
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=23.21 E-value=2e+02 Score=23.67 Aligned_cols=38 Identities=8% Similarity=0.360 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHH
Q 002964 737 EMINDLRADMARLHQGMSHMQRMLEACMDMQLELQRSV 774 (862)
Q Consensus 737 e~I~DLR~ema~LqeEmseLrk~vkacmemQ~eLQRsI 774 (862)
..|..|.+++..+..+|....+.++.+|+++..+.-.|
T Consensus 7 ~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EI 44 (59)
T 1gk6_A 7 DKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEI 44 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45778888888888888888888888999988877766
No 86
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.07 E-value=1e+02 Score=25.18 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=19.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhHHHHHHH
Q 002964 745 DMARLHQGMSHMQRMLEACMDMQLELQRSV 774 (862)
Q Consensus 745 ema~LqeEmseLrk~vkacmemQ~eLQRsI 774 (862)
++..|+.++.+|+.++..+..-..+++..+
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455777777777777776666655555544
No 87
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=22.32 E-value=1.9e+02 Score=25.03 Aligned_cols=38 Identities=16% Similarity=0.362 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHH
Q 002964 737 EMINDLRADMARLHQGMSHMQRMLEACMDMQLELQRSV 774 (862)
Q Consensus 737 e~I~DLR~ema~LqeEmseLrk~vkacmemQ~eLQRsI 774 (862)
..|..|..++..+..+|....+.++.+|+++..|...|
T Consensus 12 ~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EI 49 (74)
T 2xv5_A 12 RLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEI 49 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888888889999988887776
Done!