Query 002965
Match_columns 862
No_of_seqs 714 out of 3645
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 08:17:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002965.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002965hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tqc_A Pantothenate kinase; bi 99.9 1.6E-26 5.4E-31 253.3 -0.2 241 454-695 17-314 (321)
2 3tqc_A Pantothenate kinase; bi 99.9 3.5E-26 1.2E-30 250.6 2.5 219 10-228 16-310 (321)
3 1a7j_A Phosphoribulokinase; tr 99.8 2.6E-21 8.7E-26 209.9 7.7 176 515-690 3-216 (290)
4 3ghx_A Adenylate cyclase CYAB; 99.8 2.4E-21 8.2E-26 195.2 6.8 128 253-395 35-178 (179)
5 1sq5_A Pantothenate kinase; P- 99.8 1.4E-21 4.9E-26 213.6 4.0 219 10-228 4-298 (308)
6 1yem_A Hypothetical protein; s 99.8 4.8E-21 1.6E-25 193.0 3.9 132 252-399 32-176 (179)
7 1uj2_A Uridine-cytidine kinase 99.8 1.4E-20 4.9E-25 199.4 5.3 172 514-687 19-211 (252)
8 2een_A Hypothetical protein PH 99.8 2E-20 6.8E-25 189.4 5.9 140 252-401 23-181 (183)
9 1sq5_A Pantothenate kinase; P- 99.8 3.3E-20 1.1E-24 202.8 3.8 177 515-692 78-299 (308)
10 1odf_A YGR205W, hypothetical 3 99.8 2.4E-20 8.2E-25 202.1 2.0 177 513-690 27-277 (290)
11 3aez_A Pantothenate kinase; tr 99.8 1.1E-19 3.9E-24 198.8 5.0 219 10-228 10-301 (312)
12 1a7j_A Phosphoribulokinase; tr 99.8 3.5E-19 1.2E-23 193.0 7.4 166 61-226 4-215 (290)
13 3n10_A Adenylate cyclase 2; CY 99.8 7.1E-19 2.4E-23 177.3 7.7 128 252-394 34-177 (179)
14 3aez_A Pantothenate kinase; tr 99.8 2.2E-19 7.7E-24 196.4 4.2 239 454-693 11-303 (312)
15 2ga8_A Hypothetical 39.9 kDa p 99.7 2.6E-19 8.7E-24 197.1 2.1 142 543-687 156-349 (359)
16 2dc4_A PH1012 protein, 165AA l 99.7 9E-19 3.1E-23 174.2 5.7 126 255-396 27-165 (165)
17 1uj2_A Uridine-cytidine kinase 99.7 3.7E-18 1.3E-22 180.9 6.5 164 59-223 19-210 (252)
18 1rz3_A Hypothetical protein rb 99.7 7.6E-18 2.6E-22 172.4 6.7 168 514-689 19-200 (201)
19 3asz_A Uridine kinase; cytidin 99.7 4E-18 1.4E-22 174.9 4.3 175 515-691 4-189 (211)
20 3c8u_A Fructokinase; YP_612366 99.7 5.5E-18 1.9E-22 174.3 4.3 171 514-688 19-207 (208)
21 4i1u_A Dephospho-COA kinase; s 99.7 1.8E-18 6.1E-23 178.2 -0.3 157 59-226 6-184 (210)
22 1rz3_A Hypothetical protein rb 99.7 1.6E-17 5.6E-22 169.9 6.5 164 59-226 19-200 (201)
23 2aca_A Putative adenylate cycl 99.7 7.8E-18 2.7E-22 171.2 1.4 129 255-398 39-183 (189)
24 2ga8_A Hypothetical 39.9 kDa p 99.6 3.9E-17 1.4E-21 179.8 4.2 136 89-225 157-350 (359)
25 3c8u_A Fructokinase; YP_612366 99.6 2.7E-16 9.1E-21 161.7 7.0 166 59-225 19-207 (208)
26 2jeo_A Uridine-cytidine kinase 99.6 1.9E-16 6.6E-21 167.0 5.9 171 515-688 23-214 (245)
27 1odf_A YGR205W, hypothetical 3 99.6 3.6E-16 1.2E-20 169.3 6.6 181 44-226 12-276 (290)
28 3asz_A Uridine kinase; cytidin 99.6 1.1E-15 3.7E-20 156.7 7.8 167 60-227 4-188 (211)
29 2grj_A Dephospho-COA kinase; T 99.6 1.9E-16 6.3E-21 161.4 0.6 144 60-227 10-171 (192)
30 2jeo_A Uridine-cytidine kinase 99.5 4.2E-15 1.4E-19 156.7 7.6 164 60-224 23-213 (245)
31 2grj_A Dephospho-COA kinase; T 99.4 9.9E-15 3.4E-19 148.6 0.8 149 514-690 9-171 (192)
32 2f6r_A COA synthase, bifunctio 99.4 8E-15 2.7E-19 158.1 -0.8 160 60-227 73-253 (281)
33 1jjv_A Dephospho-COA kinase; P 99.4 2.6E-14 8.8E-19 146.0 0.4 155 62-227 2-177 (206)
34 2qt1_A Nicotinamide riboside k 99.4 3.1E-13 1.1E-17 138.2 5.8 157 60-226 19-189 (207)
35 2qt1_A Nicotinamide riboside k 99.3 8.8E-13 3E-17 134.8 5.1 160 514-689 18-189 (207)
36 2if2_A Dephospho-COA kinase; a 99.3 1.2E-13 4.1E-18 140.7 -1.4 154 62-226 1-175 (204)
37 1vht_A Dephospho-COA kinase; s 99.3 2.7E-13 9.1E-18 139.8 1.0 156 61-227 3-179 (218)
38 3bhd_A Thtpase, thiamine triph 99.3 1.2E-12 4.2E-17 137.2 5.9 134 254-399 49-221 (234)
39 4i1u_A Dephospho-COA kinase; s 99.3 1.4E-13 4.9E-18 141.6 -2.7 159 515-689 7-184 (210)
40 1uf9_A TT1252 protein; P-loop, 99.3 1.9E-13 6.4E-18 138.6 -2.7 157 59-227 5-178 (203)
41 2f6r_A COA synthase, bifunctio 99.2 6.6E-13 2.3E-17 143.0 -2.0 133 514-650 72-221 (281)
42 3d3q_A TRNA delta(2)-isopenten 99.2 1.2E-12 4.3E-17 143.7 0.1 153 517-678 7-164 (340)
43 3d3q_A TRNA delta(2)-isopenten 99.1 4.1E-12 1.4E-16 139.6 0.0 170 63-253 8-186 (340)
44 1jjv_A Dephospho-COA kinase; P 99.1 7.2E-12 2.4E-16 127.8 -2.6 158 517-690 2-177 (206)
45 3ake_A Cytidylate kinase; CMP 99.1 1.1E-11 3.7E-16 126.0 -1.3 157 64-227 4-192 (208)
46 3v85_A CYTH-like phosphatase; 99.0 1.6E-10 5.4E-15 119.2 6.5 126 252-385 25-195 (210)
47 3lw7_A Adenylate kinase relate 99.0 2.6E-11 8.9E-16 118.9 -0.7 154 63-227 2-161 (179)
48 2if2_A Dephospho-COA kinase; a 99.0 2.5E-11 8.7E-16 123.4 -2.5 126 518-649 2-144 (204)
49 3tj7_A GBAA_1210 protein; stru 98.9 5.4E-10 1.9E-14 113.6 5.1 119 255-385 32-178 (195)
50 1tev_A UMP-CMP kinase; ploop, 98.9 1.1E-10 3.9E-15 116.8 -0.5 125 62-191 3-136 (196)
51 3t61_A Gluconokinase; PSI-biol 98.9 3.6E-10 1.2E-14 114.9 2.5 138 62-226 18-163 (202)
52 1uf9_A TT1252 protein; P-loop, 98.9 5.7E-11 1.9E-15 120.2 -3.8 130 514-650 5-146 (203)
53 4e22_A Cytidylate kinase; P-lo 98.9 3.7E-10 1.3E-14 119.5 2.2 166 61-227 26-228 (252)
54 1vht_A Dephospho-COA kinase; s 98.9 1E-10 3.5E-15 120.4 -2.6 128 516-650 3-147 (218)
55 1q3t_A Cytidylate kinase; nucl 98.9 2E-10 6.8E-15 120.0 -0.6 166 59-226 13-217 (236)
56 3r20_A Cytidylate kinase; stru 98.8 1.8E-10 6.3E-15 120.4 -1.8 176 61-238 8-221 (233)
57 1zuh_A Shikimate kinase; alpha 98.8 8.8E-10 3E-14 108.5 2.9 39 61-99 6-44 (168)
58 1cke_A CK, MSSA, protein (cyti 98.8 1.5E-10 5.1E-15 119.5 -3.2 163 63-226 6-205 (227)
59 2iyv_A Shikimate kinase, SK; t 98.8 3.9E-10 1.3E-14 112.7 -1.2 144 63-227 3-152 (184)
60 2gfg_A BH2851; antiparallel ba 98.8 2.9E-09 1E-13 108.2 5.2 114 258-383 35-176 (193)
61 2pt5_A Shikimate kinase, SK; a 98.8 5.8E-10 2E-14 109.5 -0.2 109 64-190 2-114 (168)
62 1qf9_A UMP/CMP kinase, protein 98.8 6.7E-10 2.3E-14 111.0 -0.0 120 61-191 5-133 (194)
63 3ake_A Cytidylate kinase; CMP 98.8 2.1E-10 7.1E-15 116.5 -4.2 130 519-651 4-158 (208)
64 1yem_A Hypothetical protein; s 98.8 1.1E-08 3.8E-13 102.7 8.3 111 750-862 50-171 (179)
65 2h92_A Cytidylate kinase; ross 98.7 7.6E-10 2.6E-14 113.7 -1.5 158 62-226 3-200 (219)
66 1knq_A Gluconate kinase; ALFA/ 98.7 8.5E-09 2.9E-13 102.0 5.2 142 60-226 6-157 (175)
67 3trf_A Shikimate kinase, SK; a 98.7 1.8E-09 6.3E-14 107.7 0.2 38 62-99 5-42 (185)
68 3kb2_A SPBC2 prophage-derived 98.7 3.2E-09 1.1E-13 104.2 1.9 149 62-226 1-149 (173)
69 2bwj_A Adenylate kinase 5; pho 98.7 1.5E-09 5.1E-14 109.3 -0.7 121 62-191 12-138 (199)
70 3lw7_A Adenylate kinase relate 98.7 2.5E-09 8.4E-14 104.7 0.3 155 518-690 2-161 (179)
71 1e6c_A Shikimate kinase; phosp 98.7 1.7E-09 5.8E-14 106.5 -0.9 39 62-100 2-40 (173)
72 3vaa_A Shikimate kinase, SK; s 98.7 3.8E-09 1.3E-13 107.2 1.5 39 61-99 24-62 (199)
73 1kag_A SKI, shikimate kinase I 98.7 1.7E-09 5.7E-14 106.7 -1.2 36 63-98 5-40 (173)
74 1cke_A CK, MSSA, protein (cyti 98.6 1.5E-09 5E-14 111.9 -2.8 38 517-554 5-42 (227)
75 4eun_A Thermoresistant glucoki 98.6 1.3E-08 4.6E-13 103.3 4.1 147 61-235 28-184 (200)
76 1q3t_A Cytidylate kinase; nucl 98.6 1.4E-09 4.7E-14 113.7 -3.5 174 514-689 13-217 (236)
77 3fb4_A Adenylate kinase; psych 98.6 4.6E-09 1.6E-13 107.6 -0.4 116 64-189 2-127 (216)
78 3tlx_A Adenylate kinase 2; str 98.6 2.5E-08 8.4E-13 104.8 5.2 124 57-190 24-157 (243)
79 1y63_A LMAJ004144AAA protein; 98.6 1.6E-08 5.5E-13 101.3 3.5 39 61-99 9-48 (184)
80 3dl0_A Adenylate kinase; phosp 98.6 1.2E-08 4E-13 104.6 1.9 115 64-189 2-127 (216)
81 2j41_A Guanylate kinase; GMP, 98.6 4.3E-08 1.5E-12 99.2 5.7 157 62-226 6-171 (207)
82 1tev_A UMP-CMP kinase; ploop, 98.6 3.4E-09 1.2E-13 106.0 -2.7 125 517-651 3-136 (196)
83 2cdn_A Adenylate kinase; phosp 98.5 7E-09 2.4E-13 105.2 -0.8 122 59-190 17-148 (201)
84 3t61_A Gluconokinase; PSI-biol 98.5 1.2E-08 4.2E-13 103.5 0.7 141 516-689 17-163 (202)
85 4e22_A Cytidylate kinase; P-lo 98.5 1.4E-08 4.9E-13 107.2 1.0 39 516-554 26-64 (252)
86 1ukz_A Uridylate kinase; trans 98.5 6.2E-09 2.1E-13 105.5 -1.7 118 60-190 13-142 (203)
87 1via_A Shikimate kinase; struc 98.5 1.2E-08 4.2E-13 101.0 0.5 38 62-99 4-41 (175)
88 3r20_A Cytidylate kinase; stru 98.5 6E-09 2E-13 109.0 -2.5 39 516-554 8-46 (233)
89 3fdi_A Uncharacterized protein 98.5 2E-08 6.7E-13 102.7 0.1 163 62-227 6-182 (201)
90 2c95_A Adenylate kinase 1; tra 98.5 3.3E-08 1.1E-12 99.1 1.7 122 60-190 7-134 (196)
91 1qf9_A UMP/CMP kinase, protein 98.4 2.6E-08 8.7E-13 99.4 0.5 121 515-651 4-133 (194)
92 3a4m_A L-seryl-tRNA(SEC) kinas 98.4 1.4E-07 4.7E-12 100.0 5.8 136 61-227 3-156 (260)
93 3kb2_A SPBC2 prophage-derived 98.4 1.8E-08 6E-13 98.8 -1.6 37 518-554 2-38 (173)
94 3tr0_A Guanylate kinase, GMP k 98.4 1.3E-07 4.5E-12 95.5 3.9 157 62-226 7-171 (205)
95 1ly1_A Polynucleotide kinase; 98.4 8.4E-08 2.9E-12 94.6 2.3 112 62-191 2-128 (181)
96 2h92_A Cytidylate kinase; ross 98.4 1.2E-08 4.2E-13 104.6 -4.1 38 517-554 3-40 (219)
97 2pt5_A Shikimate kinase, SK; a 98.4 5.2E-08 1.8E-12 95.4 0.5 36 519-554 2-37 (168)
98 2rhm_A Putative kinase; P-loop 98.4 5.9E-08 2E-12 97.0 0.9 39 60-98 3-41 (193)
99 2dc4_A PH1012 protein, 165AA l 98.4 5.9E-07 2E-11 88.7 8.1 111 750-862 42-163 (165)
100 3tlx_A Adenylate kinase 2; str 98.4 1.5E-07 5E-12 98.9 3.7 124 512-650 24-157 (243)
101 3nwj_A ATSK2; P loop, shikimat 98.4 1.1E-07 3.9E-12 100.4 2.8 39 63-101 49-87 (250)
102 2bwj_A Adenylate kinase 5; pho 98.3 2.8E-08 9.5E-13 99.9 -2.1 121 516-651 11-138 (199)
103 2z0h_A DTMP kinase, thymidylat 98.3 8.6E-08 2.9E-12 96.2 1.5 32 64-95 2-36 (197)
104 3ghx_A Adenylate cyclase CYAB; 98.3 6.6E-07 2.2E-11 89.7 7.5 109 747-862 55-177 (179)
105 3cm0_A Adenylate kinase; ATP-b 98.3 4.1E-08 1.4E-12 97.8 -1.3 115 61-190 3-127 (186)
106 3exa_A TRNA delta(2)-isopenten 98.3 2.3E-08 8E-13 108.3 -3.8 175 62-255 3-181 (322)
107 1ukz_A Uridylate kinase; trans 98.3 1.2E-07 4.1E-12 96.0 1.4 40 515-554 13-52 (203)
108 2pbr_A DTMP kinase, thymidylat 98.3 9E-08 3.1E-12 95.6 0.1 32 64-95 2-36 (195)
109 2iyv_A Shikimate kinase, SK; t 98.3 5.5E-08 1.9E-12 96.9 -1.6 36 519-554 4-39 (184)
110 2een_A Hypothetical protein PH 98.3 4E-07 1.4E-11 91.5 4.7 114 747-862 44-174 (183)
111 2fbl_A Hypothetical protein NE 98.3 3.8E-07 1.3E-11 89.0 4.2 78 284-371 40-123 (153)
112 1qhx_A CPT, protein (chloramph 98.3 6.2E-07 2.1E-11 88.5 5.7 36 63-98 4-41 (178)
113 3iij_A Coilin-interacting nucl 98.3 9.8E-08 3.4E-12 94.8 -0.3 37 62-98 11-47 (180)
114 2qor_A Guanylate kinase; phosp 98.3 2.3E-07 8E-12 94.3 2.5 161 59-226 9-181 (204)
115 3hdt_A Putative kinase; struct 98.2 4.8E-07 1.6E-11 93.9 4.1 38 61-98 13-50 (223)
116 3crm_A TRNA delta(2)-isopenten 98.2 3.2E-07 1.1E-11 100.2 2.8 172 62-254 5-181 (323)
117 1zuh_A Shikimate kinase; alpha 98.2 1.1E-07 3.9E-12 93.3 -0.7 39 516-554 6-44 (168)
118 4eun_A Thermoresistant glucoki 98.2 4.3E-07 1.5E-11 92.1 3.2 40 515-554 27-66 (200)
119 2wwf_A Thymidilate kinase, put 98.2 6.7E-07 2.3E-11 90.8 4.7 36 61-96 9-44 (212)
120 3foz_A TRNA delta(2)-isopenten 98.2 2.8E-08 9.4E-13 107.5 -6.3 174 60-254 8-186 (316)
121 3fb4_A Adenylate kinase; psych 98.2 2.4E-07 8.3E-12 94.7 0.9 36 519-554 2-37 (216)
122 1aky_A Adenylate kinase; ATP:A 98.2 4E-07 1.4E-11 93.6 2.4 39 61-99 3-41 (220)
123 3be4_A Adenylate kinase; malar 98.2 1.6E-07 5.3E-12 96.7 -0.8 120 61-190 4-133 (217)
124 2c95_A Adenylate kinase 1; tra 98.2 8.3E-08 2.8E-12 96.2 -2.8 120 516-650 8-134 (196)
125 2jaq_A Deoxyguanosine kinase; 98.2 1.5E-07 5E-12 94.8 -1.2 29 64-92 2-30 (205)
126 1zd8_A GTP:AMP phosphotransfer 98.2 3.7E-07 1.3E-11 94.4 1.7 118 61-190 6-129 (227)
127 2vli_A Antibiotic resistance p 98.2 4.7E-07 1.6E-11 89.7 2.4 31 61-91 4-34 (183)
128 2jaq_A Deoxyguanosine kinase; 98.2 2.8E-08 9.5E-13 100.2 -6.9 28 519-546 2-29 (205)
129 2j41_A Guanylate kinase; GMP, 98.2 9.7E-07 3.3E-11 89.1 4.5 26 516-541 5-30 (207)
130 3dl0_A Adenylate kinase; phosp 98.2 4.6E-07 1.6E-11 92.7 1.9 36 519-554 2-37 (216)
131 2ze6_A Isopentenyl transferase 98.2 2.1E-07 7E-12 98.4 -0.7 35 62-96 1-35 (253)
132 2pez_A Bifunctional 3'-phospho 98.2 4E-07 1.4E-11 90.4 1.3 33 62-94 5-40 (179)
133 3trf_A Shikimate kinase, SK; a 98.1 1.3E-07 4.4E-12 94.2 -2.4 38 517-554 5-42 (185)
134 1nks_A Adenylate kinase; therm 98.1 4.6E-07 1.6E-11 90.2 1.7 37 62-98 1-42 (194)
135 3vaa_A Shikimate kinase, SK; s 98.1 1.4E-07 4.9E-12 95.6 -2.3 39 516-554 24-62 (199)
136 3a00_A Guanylate kinase, GMP k 98.1 1.7E-06 5.8E-11 86.6 5.6 24 63-86 2-25 (186)
137 3a8t_A Adenylate isopentenyltr 98.1 3.8E-07 1.3E-11 99.9 0.6 43 61-103 39-83 (339)
138 2xb4_A Adenylate kinase; ATP-b 98.1 3.6E-07 1.2E-11 94.5 0.3 116 64-190 2-127 (223)
139 3lnc_A Guanylate kinase, GMP k 98.1 1.1E-06 3.7E-11 91.1 3.9 72 150-226 118-193 (231)
140 2vp4_A Deoxynucleoside kinase; 98.1 4.5E-08 1.5E-12 101.8 -6.9 169 515-689 18-208 (230)
141 1m7g_A Adenylylsulfate kinase; 98.1 2.3E-06 7.8E-11 87.4 5.8 42 59-100 22-69 (211)
142 3tau_A Guanylate kinase, GMP k 98.1 1.5E-06 5.1E-11 88.8 4.4 27 61-87 7-33 (208)
143 3umf_A Adenylate kinase; rossm 98.1 7.9E-07 2.7E-11 91.9 2.1 123 59-191 26-155 (217)
144 3uie_A Adenylyl-sulfate kinase 98.1 2.4E-06 8.4E-11 86.4 5.6 42 59-100 22-68 (200)
145 1e4v_A Adenylate kinase; trans 98.1 3.4E-07 1.2E-11 93.8 -1.3 36 64-99 2-37 (214)
146 1ak2_A Adenylate kinase isoenz 98.0 4.1E-07 1.4E-11 94.6 -1.0 40 60-99 14-53 (233)
147 1ly1_A Polynucleotide kinase; 98.0 8.2E-07 2.8E-11 87.4 1.0 37 517-553 2-39 (181)
148 1ltq_A Polynucleotide kinase; 98.0 1.8E-06 6E-11 92.9 3.5 112 62-191 2-128 (301)
149 1kht_A Adenylate kinase; phosp 98.0 8.4E-07 2.9E-11 88.2 0.7 38 517-554 3-45 (192)
150 1y63_A LMAJ004144AAA protein; 98.0 1.9E-06 6.5E-11 86.1 3.1 39 516-554 9-48 (184)
151 3hdt_A Putative kinase; struct 98.0 3.4E-07 1.2E-11 95.1 -2.9 39 516-554 13-51 (223)
152 1zak_A Adenylate kinase; ATP:A 98.0 2.3E-07 7.9E-12 95.5 -4.4 40 60-99 3-42 (222)
153 2gks_A Bifunctional SAT/APS ki 98.0 1.9E-06 6.4E-11 101.0 2.7 107 60-187 370-488 (546)
154 1nn5_A Similar to deoxythymidy 97.9 9.3E-06 3.2E-10 82.3 5.8 33 61-93 8-40 (215)
155 2yvu_A Probable adenylyl-sulfa 97.9 5.2E-06 1.8E-10 82.8 3.7 41 60-100 11-56 (186)
156 3eph_A TRNA isopentenyltransfe 97.9 3.2E-06 1.1E-10 94.7 2.0 42 62-103 2-45 (409)
157 2vp4_A Deoxynucleoside kinase; 97.9 9.6E-07 3.3E-11 91.7 -2.0 61 166-226 144-208 (230)
158 3zvl_A Bifunctional polynucleo 97.9 7.1E-06 2.4E-10 93.0 4.8 95 60-191 256-359 (416)
159 3a00_A Guanylate kinase, GMP k 97.9 4.3E-06 1.5E-10 83.7 2.7 25 518-542 2-26 (186)
160 3fdi_A Uncharacterized protein 97.9 1.6E-06 5.6E-11 88.4 -0.5 36 517-553 6-41 (201)
161 2plr_A DTMP kinase, probable t 97.9 1.6E-06 5.5E-11 87.7 -0.6 32 62-93 4-37 (213)
162 3tr0_A Guanylate kinase, GMP k 97.8 4.5E-06 1.5E-10 84.1 2.5 26 517-542 7-32 (205)
163 3gmt_A Adenylate kinase; ssgci 97.8 1.2E-06 4.2E-11 91.1 -1.8 118 62-190 8-132 (230)
164 2qor_A Guanylate kinase; phosp 97.8 2.9E-06 9.9E-11 86.2 0.9 28 515-542 10-37 (204)
165 3iij_A Coilin-interacting nucl 97.8 2.4E-06 8.1E-11 84.7 0.1 40 516-555 10-49 (180)
166 3n10_A Adenylate cyclase 2; CY 97.8 2.6E-05 9E-10 77.9 7.7 122 731-862 42-177 (179)
167 2wwf_A Thymidilate kinase, put 97.8 3.1E-06 1.1E-10 85.8 0.7 35 516-550 9-43 (212)
168 3be4_A Adenylate kinase; malar 97.8 3.4E-06 1.1E-10 86.6 0.4 39 516-554 4-42 (217)
169 3sr0_A Adenylate kinase; phosp 97.8 5.1E-06 1.8E-10 85.1 1.2 113 64-190 2-125 (206)
170 2xb4_A Adenylate kinase; ATP-b 97.7 3.9E-06 1.3E-10 86.7 -0.3 36 519-554 2-37 (223)
171 3a4m_A L-seryl-tRNA(SEC) kinas 97.7 8.2E-06 2.8E-10 86.3 2.1 37 516-552 3-44 (260)
172 1e4v_A Adenylate kinase; trans 97.7 7.3E-06 2.5E-10 83.8 1.1 36 519-554 2-37 (214)
173 3tau_A Guanylate kinase, GMP k 97.7 1.3E-05 4.3E-10 81.9 2.8 28 515-542 6-33 (208)
174 3lnc_A Guanylate kinase, GMP k 97.7 2.2E-05 7.6E-10 81.1 4.4 27 517-543 27-54 (231)
175 3umf_A Adenylate kinase; rossm 97.7 4.7E-06 1.6E-10 86.1 -0.8 124 513-650 25-154 (217)
176 1kgd_A CASK, peripheral plasma 97.6 1.8E-05 6.3E-10 78.7 2.7 24 518-541 6-29 (180)
177 1m8p_A Sulfate adenylyltransfe 97.6 3.1E-05 1.1E-09 91.2 5.0 41 60-100 394-440 (573)
178 1x6v_B Bifunctional 3'-phospho 97.6 2E-05 6.7E-10 93.2 3.3 34 61-94 51-87 (630)
179 1kgd_A CASK, peripheral plasma 97.6 2.5E-05 8.6E-10 77.7 3.4 24 63-86 6-29 (180)
180 1ltq_A Polynucleotide kinase; 97.6 8.8E-06 3E-10 87.4 -0.2 37 517-553 2-39 (301)
181 3ch4_B Pmkase, phosphomevalona 97.5 7.1E-05 2.4E-09 76.1 5.7 145 60-228 9-175 (202)
182 2cdn_A Adenylate kinase; phosp 97.5 1.8E-05 6.3E-10 79.8 1.0 41 514-554 17-57 (201)
183 1kht_A Adenylate kinase; phosp 97.5 2E-05 6.9E-10 78.1 1.0 36 63-98 4-44 (192)
184 3cm0_A Adenylate kinase; ATP-b 97.5 2.1E-05 7.2E-10 78.0 1.0 39 516-554 3-41 (186)
185 1kag_A SKI, shikimate kinase I 97.5 1.9E-05 6.4E-10 77.4 0.4 37 517-553 4-40 (173)
186 1e6c_A Shikimate kinase; phosp 97.5 1.8E-05 6.3E-10 77.3 0.3 37 518-554 3-39 (173)
187 2aca_A Putative adenylate cycl 97.5 0.00023 8E-09 71.7 8.4 113 743-862 52-179 (189)
188 3gmt_A Adenylate kinase; ssgci 97.5 2E-05 6.7E-10 82.0 0.4 119 517-651 8-133 (230)
189 4eaq_A DTMP kinase, thymidylat 97.5 6.5E-05 2.2E-09 78.0 4.2 34 60-93 24-59 (229)
190 1knq_A Gluconate kinase; ALFA/ 97.4 4.9E-05 1.7E-09 74.7 2.9 39 515-553 6-44 (175)
191 1aky_A Adenylate kinase; ATP:A 97.4 2.7E-05 9.4E-10 79.7 1.2 39 516-554 3-41 (220)
192 2rhm_A Putative kinase; P-loop 97.4 3.2E-05 1.1E-09 76.9 1.3 39 515-553 3-41 (193)
193 3nwj_A ATSK2; P loop, shikimat 97.4 1.6E-05 5.3E-10 84.0 -1.5 37 518-554 49-85 (250)
194 1zd8_A GTP:AMP phosphotransfer 97.4 3.2E-05 1.1E-09 79.6 0.7 40 515-554 5-44 (227)
195 2ze6_A Isopentenyl transferase 97.4 5.6E-05 1.9E-09 79.6 2.4 35 518-552 2-36 (253)
196 1via_A Shikimate kinase; struc 97.3 3.9E-05 1.3E-09 75.6 0.4 36 519-554 6-41 (175)
197 1gvn_B Zeta; postsegregational 97.3 4.8E-05 1.6E-09 81.8 1.0 41 60-100 31-73 (287)
198 3sr0_A Adenylate kinase; phosp 97.3 4.4E-05 1.5E-09 78.1 0.3 36 519-554 2-37 (206)
199 3exa_A TRNA delta(2)-isopenten 97.2 0.00011 3.9E-09 79.5 3.2 38 517-554 3-42 (322)
200 1qhx_A CPT, protein (chloramph 97.2 6.7E-05 2.3E-09 73.8 1.2 37 517-553 3-41 (178)
201 2p5t_B PEZT; postsegregational 97.2 5.4E-05 1.9E-09 79.6 0.5 40 60-99 30-71 (253)
202 1gvn_B Zeta; postsegregational 97.2 0.00011 3.6E-09 79.1 2.5 40 515-554 31-72 (287)
203 1zak_A Adenylate kinase; ATP:A 97.2 5E-05 1.7E-09 77.9 -0.1 40 515-554 3-42 (222)
204 2v54_A DTMP kinase, thymidylat 97.2 0.00011 3.6E-09 73.9 2.1 35 61-95 3-38 (204)
205 2pbr_A DTMP kinase, thymidylat 97.1 0.00011 3.6E-09 73.0 1.7 32 519-550 2-36 (195)
206 3cr8_A Sulfate adenylyltranfer 97.1 0.00023 7.9E-09 83.3 4.7 39 60-98 367-411 (552)
207 3foz_A TRNA delta(2)-isopenten 97.1 0.00019 6.4E-09 77.7 3.4 40 515-554 8-49 (316)
208 3crm_A TRNA delta(2)-isopenten 97.1 0.00017 6E-09 78.6 3.1 36 517-552 5-40 (323)
209 3a8t_A Adenylate isopentenyltr 97.1 0.00022 7.7E-09 78.0 3.6 36 516-551 39-74 (339)
210 1nks_A Adenylate kinase; therm 97.1 0.00012 4E-09 72.6 1.1 36 518-553 2-42 (194)
211 3eph_A TRNA isopentenyltransfe 97.1 0.00017 5.8E-09 80.7 2.5 38 517-554 2-41 (409)
212 1ak2_A Adenylate kinase isoenz 97.1 0.00012 4.1E-09 75.8 1.2 40 515-554 14-53 (233)
213 3v9p_A DTMP kinase, thymidylat 97.0 0.00025 8.7E-09 73.6 3.2 28 60-87 23-50 (227)
214 2axn_A 6-phosphofructo-2-kinas 97.0 0.00037 1.3E-08 81.1 4.8 41 60-100 33-78 (520)
215 1ex7_A Guanylate kinase; subst 97.0 0.00021 7.3E-09 71.9 2.0 22 65-86 4-25 (186)
216 3uie_A Adenylyl-sulfate kinase 97.0 0.00027 9.1E-09 71.3 2.8 41 513-553 21-66 (200)
217 2z0h_A DTMP kinase, thymidylat 97.0 0.00022 7.6E-09 71.0 1.9 32 519-550 2-36 (197)
218 2v54_A DTMP kinase, thymidylat 96.9 0.00029 9.8E-09 70.7 2.3 35 516-550 3-38 (204)
219 2p5t_B PEZT; postsegregational 96.9 0.00029 9.8E-09 74.0 2.2 40 514-553 29-70 (253)
220 2gks_A Bifunctional SAT/APS ki 96.8 0.00028 9.6E-09 82.6 1.9 37 515-551 370-411 (546)
221 2bbw_A Adenylate kinase 4, AK4 96.8 0.0002 6.9E-09 74.7 0.6 38 61-98 26-63 (246)
222 2pez_A Bifunctional 3'-phospho 96.8 0.00035 1.2E-08 68.9 2.2 35 516-550 4-41 (179)
223 1zp6_A Hypothetical protein AT 96.8 0.00027 9.2E-09 70.2 1.4 37 62-98 9-47 (191)
224 3zvl_A Bifunctional polynucleo 96.8 0.0004 1.4E-08 78.6 2.7 37 515-551 256-292 (416)
225 2vli_A Antibiotic resistance p 96.8 0.00032 1.1E-08 69.0 1.5 31 516-546 4-34 (183)
226 1dek_A Deoxynucleoside monopho 96.8 0.00038 1.3E-08 72.9 2.0 34 62-95 1-34 (241)
227 1ex7_A Guanylate kinase; subst 96.8 0.00033 1.1E-08 70.5 1.4 41 609-649 91-134 (186)
228 2bbw_A Adenylate kinase 4, AK4 96.8 0.00025 8.5E-09 74.0 0.5 39 516-554 26-64 (246)
229 1zp6_A Hypothetical protein AT 96.7 0.00052 1.8E-08 68.1 2.7 39 515-553 7-47 (191)
230 2bdt_A BH3686; alpha-beta prot 96.7 0.00042 1.4E-08 68.9 1.9 37 63-99 3-40 (189)
231 1nn5_A Similar to deoxythymidy 96.7 0.00023 7.8E-09 71.9 -0.1 36 515-550 7-42 (215)
232 1m7g_A Adenylylsulfate kinase; 96.6 0.00083 2.8E-08 68.2 2.8 39 514-552 22-66 (211)
233 2bdt_A BH3686; alpha-beta prot 96.6 0.00055 1.9E-08 68.0 1.4 36 518-553 3-39 (189)
234 2yvu_A Probable adenylyl-sulfa 96.5 0.0009 3.1E-08 66.3 2.1 37 515-551 11-52 (186)
235 2plr_A DTMP kinase, probable t 96.4 0.00087 3E-08 67.3 2.0 27 517-543 4-30 (213)
236 3hjn_A DTMP kinase, thymidylat 96.4 0.00086 3E-08 67.9 1.9 30 64-93 2-34 (197)
237 2qmh_A HPR kinase/phosphorylas 96.2 0.0021 7.3E-08 65.1 3.3 38 63-101 35-74 (205)
238 1g8f_A Sulfate adenylyltransfe 96.1 0.0019 6.3E-08 74.8 2.6 48 48-95 380-435 (511)
239 1p5z_B DCK, deoxycytidine kina 96.0 0.0023 7.8E-08 67.3 2.5 33 60-92 22-55 (263)
240 4gp7_A Metallophosphoesterase; 95.9 0.0022 7.6E-08 63.0 1.8 34 516-551 8-41 (171)
241 1dek_A Deoxynucleoside monopho 95.9 0.0024 8.1E-08 66.8 2.0 36 518-553 2-37 (241)
242 2qmh_A HPR kinase/phosphorylas 95.9 0.0038 1.3E-07 63.3 3.3 36 517-553 34-69 (205)
243 4gp7_A Metallophosphoesterase; 95.9 0.0021 7E-08 63.2 1.2 33 62-96 9-41 (171)
244 1p5z_B DCK, deoxycytidine kina 95.8 0.0036 1.2E-07 65.8 3.1 33 515-547 22-55 (263)
245 1ye8_A Protein THEP1, hypothet 95.7 0.0022 7.6E-08 63.8 0.7 24 519-542 2-25 (178)
246 1xjc_A MOBB protein homolog; s 95.7 0.0033 1.1E-07 62.1 2.0 34 516-549 3-41 (169)
247 3cf0_A Transitional endoplasmi 95.6 0.0047 1.6E-07 66.4 2.9 35 60-94 47-81 (301)
248 1g8f_A Sulfate adenylyltransfe 95.6 0.0041 1.4E-07 71.9 2.5 52 488-543 369-421 (511)
249 1xjc_A MOBB protein homolog; s 95.6 0.0039 1.3E-07 61.6 2.0 35 61-95 3-42 (169)
250 1gtv_A TMK, thymidylate kinase 95.5 0.0019 6.6E-08 65.0 -0.5 24 64-87 2-25 (214)
251 2ocp_A DGK, deoxyguanosine kin 95.5 0.0044 1.5E-07 64.2 2.2 29 62-90 2-31 (241)
252 1znw_A Guanylate kinase, GMP k 95.5 0.0037 1.3E-07 63.2 1.5 26 517-542 20-45 (207)
253 1gtv_A TMK, thymidylate kinase 95.4 0.002 7E-08 64.9 -0.6 24 519-542 2-25 (214)
254 3u61_B DNA polymerase accessor 95.4 0.012 4.2E-07 63.3 5.5 47 503-549 34-80 (324)
255 1s96_A Guanylate kinase, GMP k 95.4 0.0041 1.4E-07 64.0 1.5 29 58-86 12-40 (219)
256 1ye8_A Protein THEP1, hypothet 95.4 0.0038 1.3E-07 62.1 1.2 25 64-88 2-26 (178)
257 3h4m_A Proteasome-activating n 95.4 0.0062 2.1E-07 64.3 2.8 34 60-93 49-82 (285)
258 2axn_A 6-phosphofructo-2-kinas 95.3 0.0049 1.7E-07 71.6 2.0 39 515-553 33-76 (520)
259 2qz4_A Paraplegin; AAA+, SPG7, 95.3 0.0064 2.2E-07 63.1 2.6 31 62-92 39-69 (262)
260 1lv7_A FTSH; alpha/beta domain 95.3 0.0059 2E-07 63.6 2.4 32 62-93 45-76 (257)
261 1znw_A Guanylate kinase, GMP k 95.3 0.005 1.7E-07 62.2 1.7 25 63-87 21-45 (207)
262 1lvg_A Guanylate kinase, GMP k 95.3 0.0039 1.3E-07 62.8 0.9 24 518-541 5-28 (198)
263 2ocp_A DGK, deoxyguanosine kin 95.3 0.0057 1.9E-07 63.3 2.1 29 516-544 1-30 (241)
264 1lvg_A Guanylate kinase, GMP k 95.3 0.0037 1.2E-07 63.0 0.6 24 63-86 5-28 (198)
265 3t15_A Ribulose bisphosphate c 95.3 0.0045 1.5E-07 66.4 1.3 36 514-549 33-68 (293)
266 1s96_A Guanylate kinase, GMP k 95.2 0.0051 1.8E-07 63.2 1.5 27 516-542 15-41 (219)
267 1z6g_A Guanylate kinase; struc 95.2 0.0043 1.5E-07 63.5 0.9 25 517-541 23-47 (218)
268 1vma_A Cell division protein F 95.2 0.008 2.7E-07 65.1 3.0 37 515-551 102-143 (306)
269 3cf0_A Transitional endoplasmi 95.2 0.014 4.9E-07 62.6 5.0 35 515-549 47-81 (301)
270 3ney_A 55 kDa erythrocyte memb 95.2 0.0056 1.9E-07 62.0 1.5 27 516-542 18-44 (197)
271 3e70_C DPA, signal recognition 95.1 0.0087 3E-07 65.4 3.1 38 514-551 126-168 (328)
272 2kjq_A DNAA-related protein; s 95.1 0.01 3.5E-07 57.1 3.1 25 62-86 36-60 (149)
273 1z6g_A Guanylate kinase; struc 95.1 0.0054 1.8E-07 62.8 1.2 25 62-86 23-47 (218)
274 3tif_A Uncharacterized ABC tra 95.0 0.0069 2.4E-07 62.9 1.9 25 518-542 32-56 (235)
275 1rj9_A FTSY, signal recognitio 95.0 0.0076 2.6E-07 65.2 2.2 26 516-541 101-126 (304)
276 1vma_A Cell division protein F 95.0 0.0098 3.4E-07 64.3 3.0 38 60-97 102-144 (306)
277 1htw_A HI0065; nucleotide-bind 95.0 0.0064 2.2E-07 59.3 1.4 27 515-541 31-57 (158)
278 3ec2_A DNA replication protein 95.0 0.01 3.6E-07 58.2 2.9 39 503-541 22-62 (180)
279 1x6v_B Bifunctional 3'-phospho 95.0 0.011 3.9E-07 69.8 3.8 35 516-550 51-88 (630)
280 2x8a_A Nuclear valosin-contain 95.0 0.0079 2.7E-07 63.9 2.1 30 520-549 47-76 (274)
281 3kl4_A SRP54, signal recogniti 95.0 0.01 3.4E-07 67.3 3.0 37 516-552 96-137 (433)
282 3ney_A 55 kDa erythrocyte memb 95.0 0.0069 2.3E-07 61.3 1.5 26 62-87 19-44 (197)
283 3b9p_A CG5977-PA, isoform A; A 94.9 0.011 3.7E-07 62.9 2.9 32 62-93 54-85 (297)
284 2kjq_A DNAA-related protein; s 94.9 0.011 3.7E-07 56.9 2.6 25 517-541 36-60 (149)
285 1m8p_A Sulfate adenylyltransfe 94.9 0.0077 2.6E-07 70.8 1.8 39 515-553 394-438 (573)
286 4b4t_K 26S protease regulatory 94.8 0.016 5.5E-07 65.5 4.3 59 37-95 167-239 (428)
287 1svm_A Large T antigen; AAA+ f 94.8 0.015 5E-07 64.8 3.9 40 508-547 160-199 (377)
288 4eaq_A DTMP kinase, thymidylat 94.8 0.009 3.1E-07 61.7 1.9 28 515-542 24-51 (229)
289 3dm5_A SRP54, signal recogniti 94.8 0.011 3.7E-07 67.1 2.7 38 516-553 99-141 (443)
290 1c9k_A COBU, adenosylcobinamid 94.7 0.0083 2.8E-07 59.8 1.5 25 520-545 2-26 (180)
291 3t15_A Ribulose bisphosphate c 94.7 0.0066 2.3E-07 65.1 0.8 35 60-94 34-68 (293)
292 3p32_A Probable GTPase RV1496/ 94.7 0.021 7E-07 63.0 4.8 43 507-549 69-116 (355)
293 3tif_A Uncharacterized ABC tra 94.7 0.0092 3.1E-07 62.0 1.8 24 63-86 32-55 (235)
294 2pcj_A ABC transporter, lipopr 94.7 0.0084 2.9E-07 61.8 1.5 24 518-541 31-54 (224)
295 1jbk_A CLPB protein; beta barr 94.7 0.024 8.2E-07 54.9 4.7 26 516-541 42-67 (195)
296 3p32_A Probable GTPase RV1496/ 94.7 0.019 6.4E-07 63.3 4.3 38 58-95 75-117 (355)
297 3b9q_A Chloroplast SRP recepto 94.7 0.012 3.9E-07 63.7 2.5 26 516-541 99-124 (302)
298 3gfo_A Cobalt import ATP-bindi 94.7 0.0097 3.3E-07 63.4 1.8 24 518-541 35-58 (275)
299 2x8a_A Nuclear valosin-contain 94.7 0.012 4.1E-07 62.5 2.5 30 65-94 47-76 (274)
300 1lv7_A FTSH; alpha/beta domain 94.6 0.02 6.8E-07 59.6 4.1 33 517-549 45-77 (257)
301 3b85_A Phosphate starvation-in 94.6 0.011 3.9E-07 60.1 2.2 23 518-540 23-45 (208)
302 1htw_A HI0065; nucleotide-bind 94.6 0.01 3.4E-07 57.9 1.6 27 60-86 31-57 (158)
303 4g1u_C Hemin import ATP-bindin 94.6 0.01 3.5E-07 62.8 1.8 24 518-541 38-61 (266)
304 1njg_A DNA polymerase III subu 94.6 0.02 6.9E-07 57.5 3.9 38 505-542 33-70 (250)
305 2cbz_A Multidrug resistance-as 94.6 0.011 3.7E-07 61.5 1.9 25 518-542 32-56 (237)
306 3h4m_A Proteasome-activating n 94.6 0.02 6.8E-07 60.4 3.9 33 515-547 49-81 (285)
307 1np6_A Molybdopterin-guanine d 94.6 0.0092 3.2E-07 59.1 1.3 26 61-86 5-30 (174)
308 2ehv_A Hypothetical protein PH 94.6 0.01 3.6E-07 60.9 1.7 22 517-538 30-51 (251)
309 2f1r_A Molybdopterin-guanine d 94.6 0.0043 1.5E-07 61.4 -1.2 25 62-86 2-26 (171)
310 3eie_A Vacuolar protein sortin 94.5 0.015 5E-07 63.1 2.8 56 38-93 14-82 (322)
311 4b4t_L 26S protease subunit RP 94.5 0.015 5.2E-07 65.9 3.1 59 36-94 175-247 (437)
312 3u61_B DNA polymerase accessor 94.5 0.018 6.1E-07 62.1 3.4 49 46-94 32-80 (324)
313 2onk_A Molybdate/tungstate ABC 94.5 0.011 3.8E-07 61.6 1.7 24 518-541 25-48 (240)
314 1bif_A 6-phosphofructo-2-kinas 94.5 0.0066 2.3E-07 69.5 -0.0 39 60-98 37-80 (469)
315 3e70_C DPA, signal recognition 94.5 0.016 5.3E-07 63.4 2.9 37 60-96 127-168 (328)
316 1b0u_A Histidine permease; ABC 94.5 0.012 4E-07 62.2 1.8 25 518-542 33-57 (262)
317 4a74_A DNA repair and recombin 94.4 0.01 3.5E-07 60.1 1.4 24 516-539 24-47 (231)
318 2eyu_A Twitching motility prot 94.4 0.01 3.5E-07 62.7 1.3 26 516-541 24-49 (261)
319 1np6_A Molybdopterin-guanine d 94.4 0.0098 3.4E-07 58.9 1.1 25 517-541 6-30 (174)
320 1c9k_A COBU, adenosylcobinamid 94.4 0.01 3.5E-07 59.2 1.2 25 64-89 1-25 (180)
321 2og2_A Putative signal recogni 94.4 0.014 4.9E-07 64.5 2.5 26 516-541 156-181 (359)
322 3kl4_A SRP54, signal recogniti 94.4 0.017 5.7E-07 65.5 3.1 36 61-96 96-136 (433)
323 2ff7_A Alpha-hemolysin translo 94.4 0.012 4.2E-07 61.5 1.9 24 518-541 36-59 (247)
324 3bos_A Putative DNA replicatio 94.4 0.019 6.6E-07 58.2 3.3 48 48-96 39-91 (242)
325 3bos_A Putative DNA replicatio 94.4 0.023 7.8E-07 57.6 3.8 38 504-542 40-77 (242)
326 2pcj_A ABC transporter, lipopr 94.4 0.011 3.8E-07 60.8 1.5 24 63-86 31-54 (224)
327 3ec2_A DNA replication protein 94.4 0.012 4E-07 57.8 1.5 25 62-86 38-62 (180)
328 1svm_A Large T antigen; AAA+ f 94.4 0.019 6.6E-07 63.9 3.4 34 59-92 166-199 (377)
329 1mv5_A LMRA, multidrug resista 94.4 0.013 4.4E-07 61.1 1.8 25 517-541 28-52 (243)
330 1g6h_A High-affinity branched- 94.4 0.013 4.4E-07 61.7 1.9 24 518-541 34-57 (257)
331 3b85_A Phosphate starvation-in 94.4 0.015 5.3E-07 59.2 2.4 22 64-85 24-45 (208)
332 1ji0_A ABC transporter; ATP bi 94.3 0.013 4.4E-07 61.0 1.9 24 518-541 33-56 (240)
333 3ch4_B Pmkase, phosphomevalona 94.3 0.013 4.5E-07 59.4 1.8 39 515-553 9-50 (202)
334 1rj9_A FTSY, signal recognitio 94.3 0.012 4.2E-07 63.5 1.7 26 61-86 101-126 (304)
335 2p65_A Hypothetical protein PF 94.3 0.025 8.5E-07 54.8 3.8 25 517-541 43-67 (187)
336 3dm5_A SRP54, signal recogniti 94.3 0.016 5.6E-07 65.6 2.8 38 61-98 99-141 (443)
337 2pze_A Cystic fibrosis transme 94.3 0.013 4.5E-07 60.5 1.8 24 518-541 35-58 (229)
338 1jbk_A CLPB protein; beta barr 94.3 0.02 7E-07 55.4 3.1 25 62-86 43-67 (195)
339 4b4t_J 26S protease regulatory 94.3 0.019 6.6E-07 64.2 3.2 59 37-95 143-215 (405)
340 2r62_A Cell division protease 94.3 0.0085 2.9E-07 62.7 0.3 29 64-92 46-74 (268)
341 1ixz_A ATP-dependent metallopr 94.3 0.013 4.5E-07 60.8 1.8 30 520-549 52-81 (254)
342 3gfo_A Cobalt import ATP-bindi 94.3 0.013 4.5E-07 62.3 1.8 23 64-86 36-58 (275)
343 4b4t_M 26S protease regulatory 94.3 0.017 6E-07 65.3 2.9 59 37-95 176-248 (434)
344 2cbz_A Multidrug resistance-as 94.3 0.014 4.6E-07 60.8 1.8 24 63-86 32-55 (237)
345 2olj_A Amino acid ABC transpor 94.3 0.014 4.6E-07 61.8 1.8 25 518-542 51-75 (263)
346 1tue_A Replication protein E1; 94.2 0.017 5.9E-07 58.8 2.4 45 503-547 44-88 (212)
347 1sgw_A Putative ABC transporte 94.2 0.012 4.1E-07 60.3 1.3 24 518-541 36-59 (214)
348 4b4t_I 26S protease regulatory 94.2 0.026 8.8E-07 63.6 4.1 60 36-95 176-249 (437)
349 4g1u_C Hemin import ATP-bindin 94.2 0.014 4.7E-07 61.9 1.8 24 63-86 38-61 (266)
350 2f1r_A Molybdopterin-guanine d 94.2 0.0059 2E-07 60.4 -1.1 24 518-541 3-26 (171)
351 2eyu_A Twitching motility prot 94.2 0.013 4.5E-07 61.8 1.6 26 61-86 24-49 (261)
352 3b9q_A Chloroplast SRP recepto 94.2 0.02 7E-07 61.7 3.1 26 61-86 99-124 (302)
353 1vpl_A ABC transporter, ATP-bi 94.2 0.015 5E-07 61.3 1.8 24 518-541 42-65 (256)
354 2px0_A Flagellar biosynthesis 94.2 0.015 5E-07 62.7 1.9 36 516-551 104-145 (296)
355 1xwi_A SKD1 protein; VPS4B, AA 94.2 0.023 7.9E-07 61.7 3.4 35 62-96 45-82 (322)
356 2onk_A Molybdate/tungstate ABC 94.2 0.015 5E-07 60.7 1.8 24 63-86 25-48 (240)
357 2yhs_A FTSY, cell division pro 94.2 0.018 6E-07 66.2 2.6 27 515-541 291-317 (503)
358 2ixe_A Antigen peptide transpo 94.2 0.015 5.1E-07 61.7 1.9 24 518-541 46-69 (271)
359 1zu4_A FTSY; GTPase, signal re 94.2 0.02 6.7E-07 62.4 2.8 37 60-96 103-144 (320)
360 2qz4_A Paraplegin; AAA+, SPG7, 94.2 0.016 5.5E-07 60.0 2.1 32 516-547 38-69 (262)
361 1b0u_A Histidine permease; ABC 94.1 0.015 5.1E-07 61.4 1.8 24 63-86 33-56 (262)
362 2ghi_A Transport protein; mult 94.1 0.015 5.3E-07 61.2 1.9 24 518-541 47-70 (260)
363 2ff7_A Alpha-hemolysin translo 94.1 0.015 5.2E-07 60.8 1.8 24 63-86 36-59 (247)
364 3b9p_A CG5977-PA, isoform A; A 94.1 0.017 6E-07 61.3 2.3 33 516-548 53-85 (297)
365 3jvv_A Twitching mobility prot 94.1 0.018 6.3E-07 63.5 2.5 23 519-541 125-147 (356)
366 2ehv_A Hypothetical protein PH 94.1 0.015 5.2E-07 59.6 1.8 21 63-83 31-51 (251)
367 1in4_A RUVB, holliday junction 94.1 0.019 6.6E-07 62.5 2.6 29 516-544 50-78 (334)
368 2chg_A Replication factor C sm 94.1 0.031 1E-06 55.5 3.9 37 504-541 26-62 (226)
369 1zu4_A FTSY; GTPase, signal re 94.1 0.02 7E-07 62.2 2.8 37 515-551 103-144 (320)
370 1ixz_A ATP-dependent metallopr 94.1 0.016 5.5E-07 60.2 1.9 28 65-92 52-79 (254)
371 2d2e_A SUFC protein; ABC-ATPas 94.1 0.015 5.2E-07 60.8 1.7 23 518-540 30-52 (250)
372 1in4_A RUVB, holliday junction 94.1 0.022 7.4E-07 62.1 3.0 30 61-90 50-79 (334)
373 2qi9_C Vitamin B12 import ATP- 94.0 0.016 5.5E-07 60.7 1.8 24 518-541 27-50 (249)
374 4b4t_H 26S protease regulatory 94.0 0.021 7.1E-07 64.9 2.9 58 38-95 205-276 (467)
375 1mv5_A LMRA, multidrug resista 94.0 0.016 5.4E-07 60.4 1.8 24 63-86 29-52 (243)
376 2yz2_A Putative ABC transporte 94.0 0.016 5.6E-07 61.2 1.9 24 518-541 34-57 (266)
377 2ihy_A ABC transporter, ATP-bi 94.0 0.016 5.5E-07 61.8 1.8 25 518-542 48-72 (279)
378 2i3b_A HCR-ntpase, human cance 94.0 0.012 4E-07 59.2 0.7 34 519-553 3-37 (189)
379 1ji0_A ABC transporter; ATP bi 94.0 0.017 5.7E-07 60.2 1.8 24 63-86 33-56 (240)
380 3cr8_A Sulfate adenylyltranfer 94.0 0.0095 3.2E-07 69.6 -0.1 36 516-551 368-409 (552)
381 4a74_A DNA repair and recombin 94.0 0.015 5.2E-07 58.9 1.4 22 63-84 26-47 (231)
382 2nq2_C Hypothetical ABC transp 94.0 0.017 5.7E-07 60.7 1.8 24 518-541 32-55 (253)
383 1g6h_A High-affinity branched- 94.0 0.017 5.8E-07 60.7 1.8 24 63-86 34-57 (257)
384 3ld9_A DTMP kinase, thymidylat 94.0 0.017 5.7E-07 59.6 1.7 29 60-88 19-47 (223)
385 2pze_A Cystic fibrosis transme 93.9 0.017 5.9E-07 59.6 1.8 24 63-86 35-58 (229)
386 2p65_A Hypothetical protein PF 93.9 0.024 8.3E-07 54.8 2.7 25 62-86 43-67 (187)
387 2olj_A Amino acid ABC transpor 93.9 0.017 5.9E-07 61.0 1.8 24 63-86 51-74 (263)
388 1sxj_C Activator 1 40 kDa subu 93.9 0.032 1.1E-06 60.7 4.0 39 503-542 33-71 (340)
389 1nij_A Hypothetical protein YJ 93.9 0.027 9.4E-07 61.0 3.3 26 60-85 2-27 (318)
390 2v3c_C SRP54, signal recogniti 93.9 0.019 6.4E-07 65.1 2.0 37 516-552 98-139 (432)
391 2zu0_C Probable ATP-dependent 93.8 0.018 6E-07 61.0 1.7 23 518-540 47-69 (267)
392 2ixe_A Antigen peptide transpo 93.8 0.018 6.2E-07 61.1 1.8 24 63-86 46-69 (271)
393 1sgw_A Putative ABC transporte 93.8 0.016 5.3E-07 59.4 1.2 23 64-86 37-59 (214)
394 2i3b_A HCR-ntpase, human cance 93.8 0.015 5.1E-07 58.3 1.0 23 64-86 3-25 (189)
395 3d8b_A Fidgetin-like protein 1 93.8 0.025 8.7E-07 62.2 3.0 32 61-92 116-147 (357)
396 2gza_A Type IV secretion syste 93.8 0.017 5.8E-07 63.9 1.5 33 518-550 176-210 (361)
397 1vpl_A ABC transporter, ATP-bi 93.8 0.019 6.4E-07 60.5 1.8 24 63-86 42-65 (256)
398 2ghi_A Transport protein; mult 93.8 0.019 6.5E-07 60.5 1.8 24 63-86 47-70 (260)
399 1iy2_A ATP-dependent metallopr 93.8 0.019 6.4E-07 60.7 1.8 30 520-549 76-105 (278)
400 3pfi_A Holliday junction ATP-d 93.8 0.024 8.1E-07 61.4 2.6 35 515-549 53-87 (338)
401 1njg_A DNA polymerase III subu 93.7 0.026 8.8E-07 56.7 2.6 40 48-87 31-70 (250)
402 2d2e_A SUFC protein; ABC-ATPas 93.7 0.02 6.7E-07 60.0 1.8 23 63-85 30-52 (250)
403 3ld9_A DTMP kinase, thymidylat 93.7 0.02 6.7E-07 59.1 1.7 30 514-543 18-47 (223)
404 3tqf_A HPR(Ser) kinase; transf 93.7 0.021 7.3E-07 56.4 1.8 32 64-96 18-49 (181)
405 2og2_A Putative signal recogni 93.7 0.028 9.7E-07 62.1 3.0 26 61-86 156-181 (359)
406 2px0_A Flagellar biosynthesis 93.6 0.019 6.6E-07 61.7 1.6 36 61-96 104-145 (296)
407 2yz2_A Putative ABC transporte 93.6 0.021 7.1E-07 60.4 1.8 24 63-86 34-57 (266)
408 2qi9_C Vitamin B12 import ATP- 93.6 0.021 7.1E-07 59.9 1.8 23 64-86 28-50 (249)
409 1d2n_A N-ethylmaleimide-sensit 93.6 0.025 8.5E-07 59.4 2.4 35 514-548 61-95 (272)
410 2ihy_A ABC transporter, ATP-bi 93.6 0.021 7.1E-07 60.9 1.8 24 63-86 48-71 (279)
411 1sxj_E Activator 1 40 kDa subu 93.6 0.024 8.2E-07 61.7 2.3 37 504-541 23-60 (354)
412 4b4t_K 26S protease regulatory 93.6 0.024 8.2E-07 64.1 2.4 36 514-549 203-238 (428)
413 2v9p_A Replication protein E1; 93.6 0.019 6.5E-07 62.0 1.5 28 60-87 124-151 (305)
414 2v9p_A Replication protein E1; 93.6 0.027 9.4E-07 60.8 2.7 30 513-542 122-151 (305)
415 2w58_A DNAI, primosome compone 93.6 0.032 1.1E-06 55.6 3.0 24 518-541 55-78 (202)
416 1d2n_A N-ethylmaleimide-sensit 93.6 0.028 9.5E-07 59.0 2.7 35 59-93 61-95 (272)
417 2pjz_A Hypothetical protein ST 93.6 0.022 7.5E-07 60.2 1.8 23 519-541 32-54 (263)
418 1bif_A 6-phosphofructo-2-kinas 93.6 0.015 5E-07 66.6 0.5 36 515-550 37-72 (469)
419 2nq2_C Hypothetical ABC transp 93.5 0.022 7.5E-07 59.8 1.7 23 64-86 33-55 (253)
420 1iy2_A ATP-dependent metallopr 93.5 0.023 8E-07 60.0 1.9 28 65-92 76-103 (278)
421 3pfi_A Holliday junction ATP-d 93.5 0.031 1.1E-06 60.5 2.9 35 60-94 53-87 (338)
422 3d8b_A Fidgetin-like protein 1 93.5 0.049 1.7E-06 59.9 4.6 32 516-547 116-147 (357)
423 1l8q_A Chromosomal replication 93.5 0.038 1.3E-06 59.6 3.6 47 505-551 24-76 (324)
424 1tue_A Replication protein E1; 93.5 0.025 8.7E-07 57.5 2.0 44 49-92 45-88 (212)
425 3hws_A ATP-dependent CLP prote 93.5 0.023 8E-07 62.5 1.9 34 62-95 51-84 (363)
426 2zu0_C Probable ATP-dependent 93.5 0.023 7.8E-07 60.1 1.8 23 63-85 47-69 (267)
427 2v3c_C SRP54, signal recogniti 93.5 0.024 8.3E-07 64.2 2.1 38 61-98 98-140 (432)
428 2qm8_A GTPase/ATPase; G protei 93.5 0.045 1.5E-06 59.9 4.2 29 513-541 51-79 (337)
429 3sop_A Neuronal-specific septi 93.5 0.021 7.3E-07 60.5 1.5 24 518-541 3-26 (270)
430 3eie_A Vacuolar protein sortin 93.5 0.051 1.7E-06 58.8 4.5 32 517-548 51-82 (322)
431 2pt7_A CAG-ALFA; ATPase, prote 93.5 0.024 8.2E-07 61.9 2.0 24 519-542 173-196 (330)
432 2qp9_X Vacuolar protein sortin 93.4 0.027 9.4E-07 62.0 2.4 31 63-93 85-115 (355)
433 4edh_A DTMP kinase, thymidylat 93.4 0.022 7.7E-07 58.2 1.6 32 62-93 6-40 (213)
434 1ofh_A ATP-dependent HSL prote 93.4 0.03 1E-06 59.3 2.7 31 517-547 50-80 (310)
435 2yhs_A FTSY, cell division pro 93.4 0.027 9.2E-07 64.6 2.4 26 61-86 292-317 (503)
436 3lv8_A DTMP kinase, thymidylat 93.4 0.017 5.9E-07 60.1 0.7 27 61-87 26-52 (236)
437 3fvq_A Fe(3+) IONS import ATP- 93.4 0.021 7.2E-07 63.1 1.4 24 518-541 31-54 (359)
438 3nh6_A ATP-binding cassette SU 93.4 0.017 5.8E-07 62.5 0.6 24 518-541 81-104 (306)
439 3tui_C Methionine import ATP-b 93.3 0.024 8.3E-07 62.7 1.7 24 518-541 55-78 (366)
440 2w0m_A SSO2452; RECA, SSPF, un 93.3 0.025 8.5E-07 57.1 1.7 34 517-550 23-61 (235)
441 2r62_A Cell division protease 93.3 0.029 1E-06 58.5 2.3 31 517-547 44-74 (268)
442 3bhd_A Thtpase, thiamine triph 93.3 0.071 2.4E-06 55.3 5.1 69 792-861 129-215 (234)
443 4b4t_M 26S protease regulatory 93.2 0.03 1E-06 63.4 2.4 36 514-549 212-247 (434)
444 2j37_W Signal recognition part 93.2 0.034 1.1E-06 64.2 2.8 37 515-551 99-140 (504)
445 3nh6_A ATP-binding cassette SU 93.2 0.019 6.4E-07 62.2 0.5 24 63-86 81-104 (306)
446 4b4t_L 26S protease subunit RP 93.2 0.032 1.1E-06 63.3 2.4 36 514-549 212-247 (437)
447 3tqf_A HPR(Ser) kinase; transf 93.2 0.028 9.5E-07 55.6 1.7 36 518-554 17-52 (181)
448 3sop_A Neuronal-specific septi 93.1 0.026 9E-07 59.8 1.6 24 63-86 3-26 (270)
449 3v9p_A DTMP kinase, thymidylat 93.1 0.025 8.6E-07 58.5 1.4 27 516-542 24-50 (227)
450 2pjz_A Hypothetical protein ST 93.1 0.028 9.5E-07 59.4 1.8 23 64-86 32-54 (263)
451 2cvh_A DNA repair and recombin 93.1 0.037 1.3E-06 55.5 2.7 36 515-550 18-55 (220)
452 1ypw_A Transitional endoplasmi 93.1 0.047 1.6E-06 66.8 4.0 58 37-94 199-270 (806)
453 3rlf_A Maltose/maltodextrin im 93.1 0.027 9.3E-07 62.6 1.7 24 518-541 30-53 (381)
454 3hws_A ATP-dependent CLP prote 93.1 0.027 9.4E-07 61.9 1.8 33 517-549 51-83 (363)
455 4edh_A DTMP kinase, thymidylat 93.1 0.029 9.9E-07 57.3 1.8 27 516-542 5-31 (213)
456 1n0w_A DNA repair protein RAD5 93.1 0.042 1.4E-06 56.1 3.0 22 63-84 25-46 (243)
457 2bbs_A Cystic fibrosis transme 93.0 0.027 9.2E-07 60.4 1.5 24 518-541 65-88 (290)
458 1z47_A CYSA, putative ABC-tran 93.0 0.029 9.9E-07 61.9 1.8 24 518-541 42-65 (355)
459 2oap_1 GSPE-2, type II secreti 93.0 0.031 1.1E-06 64.7 2.1 33 518-550 261-295 (511)
460 1nij_A Hypothetical protein YJ 93.0 0.039 1.3E-06 59.8 2.7 26 516-541 3-28 (318)
461 1sxj_A Activator 1 95 kDa subu 93.0 0.05 1.7E-06 63.0 3.8 33 517-549 77-109 (516)
462 2yyz_A Sugar ABC transporter, 93.0 0.03 1E-06 61.9 1.8 24 518-541 30-53 (359)
463 1ofh_A ATP-dependent HSL prote 93.0 0.037 1.3E-06 58.6 2.5 35 62-96 50-86 (310)
464 1hqc_A RUVB; extended AAA-ATPa 93.0 0.043 1.5E-06 58.8 3.0 32 60-91 36-67 (324)
465 2j37_W Signal recognition part 93.0 0.042 1.4E-06 63.4 3.0 38 60-97 99-141 (504)
466 2chg_A Replication factor C sm 92.9 0.036 1.2E-06 55.0 2.2 38 48-86 25-62 (226)
467 3lv8_A DTMP kinase, thymidylat 92.9 0.024 8.3E-07 58.9 0.9 27 516-542 26-52 (236)
468 2it1_A 362AA long hypothetical 92.9 0.03 1E-06 61.9 1.7 24 518-541 30-53 (362)
469 3cf2_A TER ATPase, transitiona 92.9 0.06 2E-06 65.5 4.4 59 37-95 199-271 (806)
470 3jvv_A Twitching mobility prot 92.9 0.03 1E-06 61.8 1.6 23 64-86 125-147 (356)
471 1xwi_A SKD1 protein; VPS4B, AA 92.9 0.096 3.3E-06 56.7 5.6 32 516-547 44-76 (322)
472 3tui_C Methionine import ATP-b 92.9 0.032 1.1E-06 61.7 1.8 24 63-86 55-78 (366)
473 2wsm_A Hydrogenase expression/ 92.8 0.066 2.2E-06 53.9 4.0 35 60-94 28-66 (221)
474 4b4t_J 26S protease regulatory 92.8 0.032 1.1E-06 62.5 1.7 35 515-549 180-214 (405)
475 1v43_A Sugar-binding transport 92.8 0.032 1.1E-06 62.0 1.7 24 518-541 38-61 (372)
476 2c9o_A RUVB-like 1; hexameric 92.8 0.057 2E-06 61.4 3.8 33 63-95 64-98 (456)
477 1g29_1 MALK, maltose transport 92.8 0.033 1.1E-06 61.9 1.8 24 518-541 30-53 (372)
478 3fvq_A Fe(3+) IONS import ATP- 92.8 0.03 1E-06 61.8 1.4 24 63-86 31-54 (359)
479 2zan_A Vacuolar protein sortin 92.7 0.058 2E-06 61.3 3.8 56 37-92 129-198 (444)
480 1lw7_A Transcriptional regulat 92.7 0.026 8.8E-07 62.3 0.8 28 62-89 170-197 (365)
481 1j8m_F SRP54, signal recogniti 92.7 0.048 1.7E-06 58.6 3.0 35 517-551 98-137 (297)
482 2p67_A LAO/AO transport system 92.7 0.06 2E-06 58.9 3.7 38 513-550 52-94 (341)
483 2w0m_A SSO2452; RECA, SSPF, un 92.7 0.035 1.2E-06 56.0 1.8 23 63-85 24-46 (235)
484 1um8_A ATP-dependent CLP prote 92.7 0.036 1.2E-06 61.2 1.9 34 62-95 72-105 (376)
485 1g41_A Heat shock protein HSLU 92.7 0.036 1.2E-06 62.9 1.9 34 62-95 50-83 (444)
486 4f4c_A Multidrug resistance pr 92.7 0.068 2.3E-06 68.8 4.7 23 64-86 1107-1129(1321)
487 1lw7_A Transcriptional regulat 92.7 0.027 9.2E-07 62.2 0.9 26 518-543 171-196 (365)
488 4b4t_H 26S protease regulatory 92.7 0.04 1.4E-06 62.6 2.3 35 515-549 241-275 (467)
489 4fcw_A Chaperone protein CLPB; 92.6 0.035 1.2E-06 59.1 1.7 24 518-541 48-71 (311)
490 2c9o_A RUVB-like 1; hexameric 92.6 0.059 2E-06 61.3 3.7 34 516-549 62-97 (456)
491 1n0w_A DNA repair protein RAD5 92.6 0.036 1.2E-06 56.6 1.7 24 516-539 23-46 (243)
492 1l8q_A Chromosomal replication 92.6 0.034 1.2E-06 60.0 1.6 35 62-96 37-76 (324)
493 1hqc_A RUVB; extended AAA-ATPa 92.6 0.048 1.6E-06 58.4 2.8 30 516-545 37-66 (324)
494 2www_A Methylmalonic aciduria 92.6 0.067 2.3E-06 58.8 4.0 36 61-96 73-113 (349)
495 1ls1_A Signal recognition part 92.6 0.047 1.6E-06 58.6 2.6 36 61-96 97-137 (295)
496 2w58_A DNAI, primosome compone 92.6 0.055 1.9E-06 53.8 2.9 24 63-86 55-78 (202)
497 2bbs_A Cystic fibrosis transme 92.6 0.034 1.2E-06 59.6 1.4 24 63-86 65-88 (290)
498 2gza_A Type IV secretion syste 92.5 0.029 9.9E-07 62.0 0.9 25 63-87 176-200 (361)
499 2qm8_A GTPase/ATPase; G protei 92.5 0.074 2.5E-06 58.1 4.2 28 59-86 52-79 (337)
500 3rlf_A Maltose/maltodextrin im 92.5 0.037 1.3E-06 61.6 1.8 24 63-86 30-53 (381)
No 1
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.91 E-value=1.6e-26 Score=253.29 Aligned_cols=241 Identities=17% Similarity=0.224 Sum_probs=173.6
Q ss_pred ccceeEEeEeeccCCCCCCCc--cccCCcccCceeeeeCCCcc-ccCccchhhHHHHHHH-------Hh--cCCCcEEEe
Q 002965 454 MEPVLATWHFISSDPSHAGSS--VIGSSSFRDTVKLVPMPDSY-DFDRGLLLSVQAIQAL-------LE--NKGLPVIVG 521 (862)
Q Consensus 454 ~~~~~~~w~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~i~~~-------~~--~~~~p~iIg 521 (862)
+.....+|+.+..+.+++|++ +....++++.+.+..+.+-| ++.+.+.+.....+.+ .. ..+.|++||
T Consensus 17 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~y~pl~rll~~~~~~~~~l~~~~~~~l~~~~~~~p~iig 96 (321)
T 3tqc_A 17 LQFNRQQWGNFRKDTPLTLTESDLDKLQGQIEIVSLKEVTEIYLPLSRLLSFYVTARQTLQQATYQFLGKPEPKVPYIIG 96 (321)
T ss_dssp EEEEHHHHTC------CCCCHHHHHHTTTTHHHHCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEE
T ss_pred eEECHHHHHHHhcCCCCCCCHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHhccCCCCCCEEEE
Confidence 357788999777777776665 44455566655554333333 2222222222222222 12 246789999
Q ss_pred ecCCCCCCcchhHhhhcccee-------eeEEeeccccccccc----c-cCccCCCcccchhhhcccchhhcCCc-cccc
Q 002965 522 IGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQV----K-DFKYDDFSSLDLSLLSKNISDIRNGR-RTKV 588 (862)
Q Consensus 522 I~G~sGSGKTTla~~L~~~l~-------~~vislDdfy~~~~~----~-~~n~~~p~t~D~~lL~~~L~~L~~g~-~v~~ 588 (862)
|+||+|||||||++.|+..++ +.++++|+||.+... . ..+++.|+++|.+++.+.|..+++|+ .+.+
T Consensus 97 I~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~ 176 (321)
T 3tqc_A 97 IAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRI 176 (321)
T ss_dssp EECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEE
T ss_pred EECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhHHHHhhccCcccccHHHHHHHHHhhhcccccccc
Confidence 999999999999999988763 778999999987321 1 12467899999999999999999999 8999
Q ss_pred eeeecccccccCceeeeecccceeEEEcceecccHh-----------hhhccceeeeeecccchheeheeeccccccccc
Q 002965 589 PIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPE-----------IRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCF 657 (862)
Q Consensus 589 P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~~~-----------l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~ 657 (862)
|.||+.++++.+. .+....+.+|||+||++++++. +.+.+|++|||+++.+.++.|++.||...+|..
T Consensus 177 P~yd~~~~~r~~~-~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~~~D~~I~Vda~~d~~~~R~i~Rd~~~r~~a 255 (321)
T 3tqc_A 177 PVYSHHYYDIVRG-QYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFSLFVDAQAQVIQKWYIDRVLSFWRTT 255 (321)
T ss_dssp EEEETTTTEEEEE-EEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTG
T ss_pred chhhhhccccccC-ceeeccCCCEEEEEccccccccccccccchhhhhhhhcCeEEEEECCHHHHHHHHHHhcchhhhhh
Confidence 9999999998753 3344467799999999999854 889999999999999999999999998887743
Q ss_pred ccc-----cce----------------ehhhhhhhhhcccccccccccccccCCCCcCC
Q 002965 658 MSQ-----NDI----------------MMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLS 695 (862)
Q Consensus 658 ~~~-----~~~----------------~~~v~p~~~~~I~p~~~~ADivI~n~~~~rl~ 695 (862)
... ++| .....|.+++||.|++.+||+||..+-+..++
T Consensus 256 ~~~~~s~~~~y~~~s~~ea~~~a~~~w~~~~~pn~~~~I~ptr~~Adlil~~g~~~~v~ 314 (321)
T 3tqc_A 256 FKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLMENILPYKNRAQLILEKAADHSIQ 314 (321)
T ss_dssp GGSTTSTTGGGGGSCHHHHHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEEECTTSCEE
T ss_pred ccChHHHHHHHhcCCHHHHHHHHHHHHHhccccCHHHhCccCccCceEEEecCCCCcEE
Confidence 221 111 11235899999999999999999877666543
No 2
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.91 E-value=3.5e-26 Score=250.58 Aligned_cols=219 Identities=15% Similarity=0.183 Sum_probs=175.9
Q ss_pred HhhcCcccccc-CCCCCCC----ccccccccceeEEecc---ceehhhHHHHHHHH----------------hcCCeEEE
Q 002965 10 FEEGGRDYFQQ-QPSTSSS----SPSILQSLPVHASFDH---GYYLLVKSIQELRE----------------KKGGIVTV 65 (862)
Q Consensus 10 ~~~~~r~~~~~-~~~~~~~----~~~~~~~~~~~~s~~~---~y~~l~~~i~~~~~----------------~~~~~~iI 65 (862)
|.+|+|+.|+. ..+++++ +...++++++.+|+++ +|.+|++.+..... ..+.+++|
T Consensus 16 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~y~pl~rll~~~~~~~~~l~~~~~~~l~~~~~~~p~ii 95 (321)
T 3tqc_A 16 YLQFNRQQWGNFRKDTPLTLTESDLDKLQGQIEIVSLKEVTEIYLPLSRLLSFYVTARQTLQQATYQFLGKPEPKVPYII 95 (321)
T ss_dssp EEEEEHHHHTC------CCCCHHHHHHTTTTHHHHCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEE
T ss_pred ceEECHHHHHHHhcCCCCCCCHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHhccCCCCCCEEE
Confidence 77899999999 6666655 5666899999999887 89999999854431 13567899
Q ss_pred eecCCCCCCcchHHHHhhhcee-------eEEEeecccccc---------cCCCCCCCccchHHHHHhhhhhhcCC-Ccc
Q 002965 66 GIGGPSGSGKTSLAEKLASVIG-------CTLISMENYRVG---------VDEGNDLDSIDFDALVQNLQDLTEGK-DTL 128 (862)
Q Consensus 66 gItG~sGSGKSTlA~~La~~Lg-------~~vI~~D~~~~~---------~~~~~~~~s~d~~~l~~~L~~l~~~~-~i~ 128 (862)
||+|++||||||+++.|+..++ +.++++|+||.. ....+.|+++|.+.+.+.|..++.|+ .+.
T Consensus 96 gI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~ 175 (321)
T 3tqc_A 96 GIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVR 175 (321)
T ss_dssp EEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEE
T ss_pred EEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhHHHHhhccCcccccHHHHHHHHHhhhccccccc
Confidence 9999999999999999988764 788999999752 23467799999999999999999998 899
Q ss_pred ccccccccccccccceeeccCceEEEEcccchhhHh-----------hhhccceEEEEEeceeeeeeeeeecccCCc---
Q 002965 129 IPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDAR-----------LRSLLDIRVAVVGGVHFSLISKVQYDIGDS--- 194 (862)
Q Consensus 129 ~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~-----------l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~--- 194 (862)
+|.|++..+.+.........+.+++|+||+++++.. +.+.+|++|||+++.+.++.|++.||...+
T Consensus 176 ~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~~~D~~I~Vda~~d~~~~R~i~Rd~~~r~~a 255 (321)
T 3tqc_A 176 IPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFSLFVDAQAQVIQKWYIDRVLSFWRTT 255 (321)
T ss_dssp EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTG
T ss_pred cchhhhhccccccCceeeccCCCEEEEEccccccccccccccchhhhhhhhcCeEEEEECCHHHHHHHHHHhcchhhhhh
Confidence 999999999887544455567889999999999855 889999999999999999999999994432
Q ss_pred -------------cchhhHH---hhh-----hhhhhcccCCCcccceeecCCccc
Q 002965 195 -------------CSLDSLI---DSI-----FPLFRKHIEPDLHHAQIRINNRFV 228 (862)
Q Consensus 195 -------------~~~e~~~---~~~-----~p~~~k~Iep~~~~ADiII~N~~~ 228 (862)
.+.+++. ..+ .|+++++|.|++.+||+|++.+-.
T Consensus 256 ~~~~~s~~~~y~~~s~~ea~~~a~~~w~~~~~pn~~~~I~ptr~~Adlil~~g~~ 310 (321)
T 3tqc_A 256 FKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLMENILPYKNRAQLILEKAAD 310 (321)
T ss_dssp GGSTTSTTGGGGGSCHHHHHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEEECTT
T ss_pred ccChHHHHHHHhcCCHHHHHHHHHHHHHhccccCHHHhCccCccCceEEEecCCC
Confidence 1222222 222 589999999999999999987743
No 3
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.83 E-value=2.6e-21 Score=209.85 Aligned_cols=176 Identities=15% Similarity=0.293 Sum_probs=136.1
Q ss_pred CCcEEEeecCCCCCCcchhHhhhcccee-----eeEEeeccccc-ccc-----------cccCccCC--Ccccchhhhcc
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFK-SEQ-----------VKDFKYDD--FSSLDLSLLSK 575 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdfy~-~~~-----------~~~~n~~~--p~t~D~~lL~~ 575 (862)
.++++|||+||+||||||+|+.|++.++ +.++++|+||+ +.. .+..+++. |+++|.+.+.+
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r~~~~~~~~~~~~~~~~g~~~~~~fg~~~~d~~~l~~ 82 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELER 82 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhcCCHHHhhhhhhhhhhccCcCcCCCChhhhcHHHHHH
Confidence 3577999999999999999999999887 89999999997 221 11134444 89999999999
Q ss_pred cchhhcCCccccceeeec-----ccccccCc--eeeeec-ccceeEEEcceecc----cHhhhhccceeeeeecccchhe
Q 002965 576 NISDIRNGRRTKVPIFDL-----ETGARSGF--KELEVS-EDCGVIIFEGVYAL----HPEIRKSLDLWIAVVGGVHSHL 643 (862)
Q Consensus 576 ~L~~L~~g~~v~~P~yd~-----~~~~r~~~--~~~~~~-~~~~vVIvEG~~~~----~~~l~~~~D~~I~v~~~~d~rl 643 (862)
.+..+..++.+..|.|++ ..+.+... ..|... .+.+++|+||++++ +..+.+.+|++|||+++.+.++
T Consensus 83 ~l~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~~~~~v~~~~D~~IfV~a~~~~rl 162 (290)
T 1a7j_A 83 VFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEW 162 (290)
T ss_dssp HHHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBCGGGCSEEEEEEECHHHHH
T ss_pred HHHHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEecccccccchHhHHHhCCEEEEEECCHHHHH
Confidence 999999999999999965 33333321 112222 35689999999998 4568889999999999999999
Q ss_pred eheeecccccccccccc-cceehhhhhhhhhccccccccccc------ccccCC
Q 002965 644 ISRVQRDKSRMGCFMSQ-NDIMMTVFPMFQQHIEPHLVHAHL------KIRNDF 690 (862)
Q Consensus 644 ~Rri~Rd~~~rg~~~~~-~~~~~~v~p~~~~~I~p~~~~ADi------vI~n~~ 690 (862)
.|++.||...+|.+.+. .+......|.+.+||.|.+..||+ +|+|+.
T Consensus 163 ~Rrl~Rd~~~RG~s~e~v~~~i~~r~~~~~r~i~p~~~~AD~~~~~~~vIDns~ 216 (290)
T 1a7j_A 163 IQKIHRDRATRGYTTEAVTDVILRRMHAYVHCIVPQFSQTDINFQRVPVVDTSN 216 (290)
T ss_dssp HHHHHHTSSSCCSCCCCHHHHHHHHHHHHHHHTGGGGGTCSEEEEEEESSCCSC
T ss_pred HHHhhhhhhhcCCChHHHHHHHHHhCccHHHhhhhhhccCCEeeccCceecCCC
Confidence 99999999999988765 222333488999999999999999 898864
No 4
>3ghx_A Adenylate cyclase CYAB; CYTH domain, antiparallel barrel, product complex, cyclic AMP, lyase; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0y_A* 3n0z_A* 3n10_A* 2fjt_A
Probab=99.83 E-value=2.4e-21 Score=195.25 Aligned_cols=128 Identities=12% Similarity=0.116 Sum_probs=112.8
Q ss_pred ccCCcccccceeeeeccCCCchhhhhcccceeeeecc--eeEEEeeCceeeeccceeeccccceeeec----eeccchhc
Q 002965 253 FQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSG--IRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLGGLLD 326 (862)
Q Consensus 253 ~~~~~~e~d~Y~~~~~r~~~~~~~al~~~~lRiR~~~--~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v----~~~~~L~~ 326 (862)
+.+...|+|+||+.|.++++.++.++ |||..+ ++..+|||||+.+. +.|+.| +|.++|..
T Consensus 35 ~~~~~~q~d~yfd~p~~~l~~~~~~l-----RiR~~~~~~~~~~t~Kgp~~~~---------~~e~~v~d~~~~~~iL~~ 100 (179)
T 3ghx_A 35 FTLNNHEKDIYLDANGQDLAKQQISM-----VLREMNPSGIRLWIVKGPGAER---------CEASNIEDVSKVQSMLAT 100 (179)
T ss_dssp EEEEEEEEEEEEECTTCTTGGGTCEE-----EEEEEETTCCEEEEEECSSSSB---------EEEEECSCHHHHHHHHHH
T ss_pred ccCcceEEEEEEeCCCccHHHCCcEE-----EEEEecCCCcEEEEEecCCCCc---------EEEEEcCCHHHHHHHHHH
Confidence 45667899999999999999888888 999874 67899999998642 346666 88999999
Q ss_pred cccEEEEEEeeceeeEeeCeeEEeeehhccccceEEEEEcCC--c-------cchhhhhhhccccCCc-chHHHHHHHH
Q 002965 327 LGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTN--R-------KTVGAEALRMGINGPW-ITKSYLEMVL 395 (862)
Q Consensus 327 LGy~~~~~~~K~R~~~~~~~~~v~lD~v~~lG~~FvEiE~~~--~-------~~v~~~~~~Lgl~~~~-~~~sYlel~l 395 (862)
|||.++..++|.|++|.+++++|+||+|+|||. |+|||++. + +.+.+++++|||+.+. +++||+||++
T Consensus 101 LG~~~~~~v~K~R~~y~~~~~~i~LD~v~glG~-f~EIE~~~~d~~~~~~~~~~i~~l~~~LGi~~~~~~~~sY~eLl~ 178 (179)
T 3ghx_A 101 LGYHPAFTIEKQRSIYFVGKFHITVDHLTGLGD-FAEIAIMTDDATELDKLKAECRDFANTFGLQVDQQEPRSYRQLLG 178 (179)
T ss_dssp TTCEEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEEESCGGGHHHHHHHHHHHHHHHTCCGGGBCCSCHHHHHT
T ss_pred CCCcEEEEEEEEEEEEEECCEEEEEEccCCCcc-EEEEEEEcCChhhHHHHHHHHHHHHHHcCcChhhceehhHHHHhh
Confidence 999999999999999999999999999999998 99999872 2 6788899999999865 9999999985
No 5
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.82 E-value=1.4e-21 Score=213.62 Aligned_cols=219 Identities=14% Similarity=0.185 Sum_probs=162.4
Q ss_pred HhhcCcccccc-CCCCCCC----ccccccccceeEEecc---ceehhhHHHHHHH----------------HhcCCeEEE
Q 002965 10 FEEGGRDYFQQ-QPSTSSS----SPSILQSLPVHASFDH---GYYLLVKSIQELR----------------EKKGGIVTV 65 (862)
Q Consensus 10 ~~~~~r~~~~~-~~~~~~~----~~~~~~~~~~~~s~~~---~y~~l~~~i~~~~----------------~~~~~~~iI 65 (862)
|.+|+|+.|++ ....+.+ ....+.+++..+++++ .|.++++.+.... ....++.+|
T Consensus 4 ~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~ii 83 (308)
T 1sq5_A 4 YLQFDRNQWAALRDSVPMTLSEDEIARLKGINEDLSLEEVAEIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYII 83 (308)
T ss_dssp EEEEEHHHHHHTCC---C-CCHHHHHHHHHHCTTCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEE
T ss_pred cEEECHHHHHHhhhcCCCCCCHHHHHhhhCCccccchHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEE
Confidence 67899999988 4443332 2233455566777777 6767777665433 122566899
Q ss_pred eecCCCCCCcchHHHHhhhcee-------eEEEeecccccc--------c-CCCCCCCccchHHHHHhhhhhhcCCC-cc
Q 002965 66 GIGGPSGSGKTSLAEKLASVIG-------CTLISMENYRVG--------V-DEGNDLDSIDFDALVQNLQDLTEGKD-TL 128 (862)
Q Consensus 66 gItG~sGSGKSTlA~~La~~Lg-------~~vI~~D~~~~~--------~-~~~~~~~s~d~~~l~~~L~~l~~~~~-i~ 128 (862)
||+|++|||||||++.|+..++ +.++++|+++.. + ...+.+.+++...+...+..+..+.. +.
T Consensus 84 gI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~~~~~~~vq~~~~~~~~~~~~~~~~~~~l~~~~~~i~ 163 (308)
T 1sq5_A 84 SIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKSGVPNVT 163 (308)
T ss_dssp EEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBCHHHHHHHHHHHTTTCSCEE
T ss_pred EEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHHHHHhCCEeecCCCCCCccHHHHHHHHHHHhCCCCcee
Confidence 9999999999999999998766 789999998641 2 23455678888888888888888877 89
Q ss_pred ccccccccccccccceeeccCceEEEEcccchhhH-----------hhhhccceEEEEEeceeeeeeeeeecccC-----
Q 002965 129 IPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDA-----------RLRSLLDIRVAVVGGVHFSLISKVQYDIG----- 192 (862)
Q Consensus 129 ~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~-----------~l~~~~D~~I~Vda~~~~~l~R~i~RD~~----- 192 (862)
+|.|++..+.+.........+.++||+||+++++. .+.+++|++|||++|.+.+++|+++|+..
T Consensus 164 ~P~~~~~~~~~~~~~~~~~~~~~ivIlEG~~l~~~~~~~~~~~~~~~~~~~~D~~i~V~~~~~~~~~R~~~R~~~~r~~~ 243 (308)
T 1sq5_A 164 APVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGA 243 (308)
T ss_dssp ECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccccccCcccccceecCCCCEEEECchhhCCCccccccccchHHHHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhh
Confidence 99999999887754333334568999999999986 68899999999999999999999998731
Q ss_pred C-----------ccchhh---HHhhh-----hhhhhcccCCCcccceeecCCccc
Q 002965 193 D-----------SCSLDS---LIDSI-----FPLFRKHIEPDLHHAQIRINNRFV 228 (862)
Q Consensus 193 ~-----------~~~~e~---~~~~~-----~p~~~k~Iep~~~~ADiII~N~~~ 228 (862)
. ..+.++ .+..+ .|++.+||+|++++||+||+|+..
T Consensus 244 ~r~~~~~~~~~~g~s~e~a~~~i~~q~~~~~~~~~~~~i~~~~~~AD~vI~n~~~ 298 (308)
T 1sq5_A 244 FTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKSAN 298 (308)
T ss_dssp TTCTTSTTHHHHTSCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECGG
T ss_pred ccCCchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHHcccccccCcEEEEeCCC
Confidence 0 123333 23333 466889999999999999999843
No 6
>1yem_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Pyrococcus furiosus} SCOP: d.63.1.2
Probab=99.81 E-value=4.8e-21 Score=192.98 Aligned_cols=132 Identities=18% Similarity=0.283 Sum_probs=112.3
Q ss_pred cccCCcccccceeeeeccCCCchhhhhcccceeeee--cceeEEEeeCceeeeccceeeccccceeeec----eeccchh
Q 002965 252 AFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQ--SGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLGGLL 325 (862)
Q Consensus 252 ~~~~~~~e~d~Y~~~~~r~~~~~~~al~~~~lRiR~--~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v----~~~~~L~ 325 (862)
.+.....|.|.||+.|.+ +|||||. .++++.||||||. + +.. +.+.|+|+.| .|.++|.
T Consensus 32 ~~~~~~~Q~d~Yfd~p~~-----------~~LRIR~~~~~~~~~lT~K~p~-~-g~~--k~~~E~e~~v~d~~~~~~iL~ 96 (179)
T 1yem_A 32 EFVRYEEQEDVYFEVPRP-----------KLLRIRGVHNLKKYYLTFKEIL-D-ENN--EEFYEVEFEIGDFEKAVEVFK 96 (179)
T ss_dssp EEEEEEEEEEEEECCCTT-----------EEEEEEEETTTTEEEEEEEEEC-S-SSS--CEEEEEEEEESCHHHHHHHHH
T ss_pred ccCcceEEEEEEEcCCCC-----------CEEEEEEEcCCCeEEEEEeccC-C-CCc--cceeEEEEEeCCHHHHHHHHH
Confidence 455567799999998855 5679995 4889999999998 4 443 8999999999 7888999
Q ss_pred ccccEEEEEEeeceeeEeeCeeEEeeehhccccceEEEEEcCC------ccchhhhhhhccccCCc-chHHHHHHHHHhc
Q 002965 326 DLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTN------RKTVGAEALRMGINGPW-ITKSYLEMVLEKK 398 (862)
Q Consensus 326 ~LGy~~~~~~~K~R~~~~~~~~~v~lD~v~~lG~~FvEiE~~~------~~~v~~~~~~Lgl~~~~-~~~sYlel~l~~~ 398 (862)
.|||.+...++|.|..|.+++++|+||+++|+|. |+|||... .+.+.+++++|||+.+. +++||+||++++.
T Consensus 97 ~LG~~~~~~i~K~R~~~~~~~~~i~lD~~~~lG~-f~EIE~~~~~~e~~~~~~~~ll~~LGi~~~~~~~~sY~eLl~~~~ 175 (179)
T 1yem_A 97 RLGFKIQATIKKKRWVYKLNGVTLEVNRVEGIGD-FVDIEVISDSPEEAKEKIWEVAKMLGLKEEDVEPRLYLELINELS 175 (179)
T ss_dssp HTTCCEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEECSCHHHHHHHHHHHHHHTTCCGGGBCCSCTTTTC----
T ss_pred HCCCcEEEEEEEEEEEEEECCEEEEEEecCCCCC-EEEEEEecCChHHHHHHHHHHHHHcCCChhhceehhHHHHHHhhh
Confidence 9999999999999999999999999999999997 99999874 36889999999999875 9999999998865
Q ss_pred C
Q 002965 399 G 399 (862)
Q Consensus 399 ~ 399 (862)
+
T Consensus 176 ~ 176 (179)
T 1yem_A 176 G 176 (179)
T ss_dssp -
T ss_pred c
Confidence 4
No 7
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.80 E-value=1.4e-20 Score=199.44 Aligned_cols=172 Identities=26% Similarity=0.483 Sum_probs=139.3
Q ss_pred CCCcEEEeecCCCCCCcchhHhhhccceeee----------EEeeccccccc--------ccccCccCCCcccchhhhcc
Q 002965 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCE----------VVSLESYFKSE--------QVKDFKYDDFSSLDLSLLSK 575 (862)
Q Consensus 514 ~~~p~iIgI~G~sGSGKTTla~~L~~~l~~~----------vislDdfy~~~--------~~~~~n~~~p~t~D~~lL~~ 575 (862)
.+.|++|||+|++||||||+|+.|++.+|.. ++++|+||+.. ..+.+.|++|+++|.+++.+
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l~~ 98 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILK 98 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHHHH
Confidence 3578999999999999999999999988865 89999999741 12456788999999999999
Q ss_pred cchhhcCCccccceeeecccccccCceeeeecccceeEEEcceecc-cHhhhhccceeeeeecccchheeheeecccccc
Q 002965 576 NISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-HPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRM 654 (862)
Q Consensus 576 ~L~~L~~g~~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~-~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~r 654 (862)
.|..+..+..+..|.||+.++.+.. .+....+.++||+||++++ .+.+.+.+|..||++++.+.++.|+..|+...+
T Consensus 99 ~L~~l~~~~~v~~~~~d~~~~~~~~--~~~~~~~~~~vIveG~~~~~~~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~r 176 (252)
T 1uj2_A 99 TLKEITEGKTVQIPVYDFVSHSRKE--ETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISER 176 (252)
T ss_dssp HHHHHHTTCCEEEEEEETTTTEEEE--EEEEECCCSEEEEECTTTTSSHHHHHHCSEEEEEECCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCeeecCccccccccCCC--ceeeeCCCcEEEEeeeccccCHHHHHhcCeeEEEeCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999988763 2322345689999999997 578888999999999999999999998875445
Q ss_pred cccccc--cceehhhhhhhhhcccccccccccccc
Q 002965 655 GCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIR 687 (862)
Q Consensus 655 g~~~~~--~~~~~~v~p~~~~~I~p~~~~ADivI~ 687 (862)
|.+.+. .++.....+.+..++.|....||++|+
T Consensus 177 g~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~ 211 (252)
T 1uj2_A 177 GRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIP 211 (252)
T ss_dssp CCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEE
T ss_pred CCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEe
Confidence 544432 233444556788888898889999983
No 8
>2een_A Hypothetical protein PH1819; dimer, NPPSFA, national project on Pro structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=99.80 E-value=2e-20 Score=189.35 Aligned_cols=140 Identities=21% Similarity=0.325 Sum_probs=120.6
Q ss_pred cccCCcccccceeeeeccCCCchhhhhcccceeee----ecceeEEEeeCceeeeccceeeccccceeeece-----ecc
Q 002965 252 AFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMR----QSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGRM-----TLG 322 (862)
Q Consensus 252 ~~~~~~~e~d~Y~~~~~r~~~~~~~al~~~~lRiR----~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v~-----~~~ 322 (862)
.+.....|+|.||+.|+++++.++.++ ||| ..+++..+|||||..++.. +.|.|+|+.|. +..
T Consensus 23 ~~~~~~~q~d~YfDtp~~~L~~~~~~L-----RiR~~~~~~~~~~~lT~K~p~~~~~~---~~r~E~e~~v~~~~~~~~~ 94 (183)
T 2een_A 23 EFMRKEIHEDIYYQHPCRDFSKTDEAL-----RIRIKRFNGHNEVFLTYKGPKIDEKS---KTRLEIEVEIQEDVDKYFE 94 (183)
T ss_dssp EEEEEEEEEEEEEECSSSCHHHHTCEE-----EEEEEEETTEEEEEEEEEEEECCTTS---CCEEEEEEEECSCHHHHHH
T ss_pred ccCccEEEEEeEEcCCCccHHhCCeEE-----EEeeeecCCCCEEEEEECCCcCCCCc---eeEEEEEEeecCCHHHHHH
Confidence 344456799999999999998888877 999 5578999999999775544 89999999986 889
Q ss_pred chhccccEEEEEEeeceeeEeeC-eeEEeeehhccccceEEEEEcC--C-------ccchhhhhhhccccCCcchHHHHH
Q 002965 323 GLLDLGYSVVASYKRASTYVVYG-NLSVSFETIDTLDETFMVLRGT--N-------RKTVGAEALRMGINGPWITKSYLE 392 (862)
Q Consensus 323 ~L~~LGy~~~~~~~K~R~~~~~~-~~~v~lD~v~~lG~~FvEiE~~--~-------~~~v~~~~~~Lgl~~~~~~~sYle 392 (862)
+|..|||.++++++|.|+.|.++ +++|+||+++++|. |+|||.. + .+.+.+++++||| .+.+++||++
T Consensus 95 ~L~~lgl~~~~~~~k~R~~~~~~~~~~v~lD~~~~lg~-f~EiE~e~~~~~~~~~~~~~~~~l~~~lgi-~~~~~~sY~e 172 (183)
T 2een_A 95 LLDRLGFKEVLKVVKTREKYYVEKGVTITLDEVEGLGK-FIEIETLVKEKDEIPEAVEKLEKILRELGV-EKFERRSYLE 172 (183)
T ss_dssp HHHHTTCEEEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEECSSGGGHHHHHHHHHHHHHHHTC-CCBCCSCHHH
T ss_pred HHHHCCCeEEEEEEEEEEEEEeCCCEEEEEEeecCCee-EEEEEEecCCcccHHHHHHHHHHHHHHcCC-CCceeccHHH
Confidence 99999999999999999999999 99999999999999 9999986 2 1577899999999 6669999999
Q ss_pred HHHHhcCCC
Q 002965 393 MVLEKKGVP 401 (862)
Q Consensus 393 l~l~~~~~~ 401 (862)
|++++.+.+
T Consensus 173 ll~~~~~~~ 181 (183)
T 2een_A 173 LLLEKRTEL 181 (183)
T ss_dssp HHHHTC---
T ss_pred HHHhhhhhc
Confidence 999876543
No 9
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.78 E-value=3.3e-20 Score=202.77 Aligned_cols=177 Identities=18% Similarity=0.179 Sum_probs=141.6
Q ss_pred CCcEEEeecCCCCCCcchhHhhhcccee-------eeEEeeccccccccc----cc-CccCCCcccchhhhcccchhhcC
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQV----KD-FKYDDFSSLDLSLLSKNISDIRN 582 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~-------~~vislDdfy~~~~~----~~-~n~~~p~t~D~~lL~~~L~~L~~ 582 (862)
+.+.+|||+||+|||||||++.|+..++ +.++++|+++.+... +- .+++.|.++|...+...+..+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~~~~~~~vq~~~~~~~~~~~~~~~~~~~l~~ 157 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKS 157 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBCHHHHHHHHHHHTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHHHHHhCCEeecCCCCCCccHHHHHHHHHHHhC
Confidence 5678999999999999999999998765 779999999975321 11 23566788999999999999998
Q ss_pred Ccc-ccceeeecccccccCceeeeecccceeEEEcceecccH-----------hhhhccceeeeeecccchheeheeecc
Q 002965 583 GRR-TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHP-----------EIRKSLDLWIAVVGGVHSHLISRVQRD 650 (862)
Q Consensus 583 g~~-v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~~-----------~l~~~~D~~I~v~~~~d~rl~Rri~Rd 650 (862)
|.. +.+|.||+..+++.+.. +....+.++||+|||+++++ .+.+.+|.+|||++|.+.++.|++.|+
T Consensus 158 ~~~~i~~P~~~~~~~~~~~~~-~~~~~~~~ivIlEG~~l~~~~~~~~~~~~~~~~~~~~D~~i~V~~~~~~~~~R~~~R~ 236 (308)
T 1sq5_A 158 GVPNVTAPVYSHLIYDVIPDG-DKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRF 236 (308)
T ss_dssp TCSCEEECCEETTTTEECTTC-CEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHHHHHH
T ss_pred CCCceecccccccccCccccc-ceecCCCCEEEECchhhCCCccccccccchHHHHHhCCEEEEEECCHHHHHHHHHHHH
Confidence 887 99999999999887532 22234568999999999985 688999999999999999999999997
Q ss_pred cccc---------------cccccc------cceehhhhhhhhhcccccccccccccccCCCC
Q 002965 651 KSRM---------------GCFMSQ------NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDP 692 (862)
Q Consensus 651 ~~~r---------------g~~~~~------~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~ 692 (862)
...| |.+.++ .||...+.|++.+||+|.+..||+||+|+-+.
T Consensus 237 ~~~r~~~~r~~~~~~~~~~g~s~e~a~~~i~~q~~~~~~~~~~~~i~~~~~~AD~vI~n~~~~ 299 (308)
T 1sq5_A 237 LKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKSANH 299 (308)
T ss_dssp HHHHHTTTTCTTSTTHHHHTSCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECGGG
T ss_pred HHHHHhhccCCchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHHcccccccCcEEEEeCCCC
Confidence 4322 333332 34555577899999999999999999987554
No 10
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.78 E-value=2.4e-20 Score=202.11 Aligned_cols=177 Identities=18% Similarity=0.269 Sum_probs=133.5
Q ss_pred cCCCcEEEeecCCCCCCcchhHhhhcccee-------eeEE-eecccccccccc-c-----------CccCCCcccchhh
Q 002965 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVG-------CEVV-SLESYFKSEQVK-D-----------FKYDDFSSLDLSL 572 (862)
Q Consensus 513 ~~~~p~iIgI~G~sGSGKTTla~~L~~~l~-------~~vi-slDdfy~~~~~~-~-----------~n~~~p~t~D~~l 572 (862)
..+++.+|||+|++|||||||++.|+..++ +.++ ++|+||.+.... . ..++.|+++|.++
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~ 106 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKL 106 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHH
Confidence 456789999999999999999999998874 3455 999999984311 1 1134699999999
Q ss_pred hcccchhhcCC------ccccceeeeccc----ccccCceeeeecccceeEEEcceeccc-Hh-----------------
Q 002965 573 LSKNISDIRNG------RRTKVPIFDLET----GARSGFKELEVSEDCGVIIFEGVYALH-PE----------------- 624 (862)
Q Consensus 573 L~~~L~~L~~g------~~v~~P~yd~~~----~~r~~~~~~~~~~~~~vVIvEG~~~~~-~~----------------- 624 (862)
+.+.|..++.| +.+.+|.||+.. ++|.+...+... +.+|+|+||++++. +.
T Consensus 107 l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld~~~~~~~~~~~~~~~l~~~ 185 (290)
T 1odf_A 107 LQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFNPILQGIENNDLLTGDMVDV 185 (290)
T ss_dssp HHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCCCCCSCTTTCSSSCTTHHHH
T ss_pred HHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCCccchhhhhcccchhhHHHH
Confidence 99999999998 678899999998 888764444445 78999999999853 32
Q ss_pred ----------hhhcccee---eeeecccchheeh-eeec--c-cccc--cccccc-cceehhhhhhhhhcccccc-----
Q 002965 625 ----------IRKSLDLW---IAVVGGVHSHLIS-RVQR--D-KSRM--GCFMSQ-NDIMMTVFPMFQQHIEPHL----- 679 (862)
Q Consensus 625 ----------l~~~~D~~---I~v~~~~d~rl~R-ri~R--d-~~~r--g~~~~~-~~~~~~v~p~~~~~I~p~~----- 679 (862)
+++++|++ |||+++.+.++.| |++| | ..++ |.+.+. .+|...++|+|+.|++|..
T Consensus 186 n~~l~~y~~~l~~~~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~v~~~~~~~~p~y~~~~~~~~~~~~~ 265 (290)
T 1odf_A 186 NAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQVHAFVDRYMPSYKLYLNDFVRSESL 265 (290)
T ss_dssp HHHHHHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHHHHHHHTTHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHhhhhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchHHHHhHHHHHhccC
Confidence 34445666 9999988888877 8888 5 2334 666554 5777788999888887643
Q ss_pred -cccccccccCC
Q 002965 680 -VHAHLKIRNDF 690 (862)
Q Consensus 680 -~~ADivI~n~~ 690 (862)
..||+|+..+-
T Consensus 266 ~~~adlvl~~~~ 277 (290)
T 1odf_A 266 GSIATLTLGIDS 277 (290)
T ss_dssp SSSEEEEEEECT
T ss_pred CCCCCEEEEECC
Confidence 25777765443
No 11
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.77 E-value=1.1e-19 Score=198.78 Aligned_cols=219 Identities=16% Similarity=0.159 Sum_probs=168.1
Q ss_pred HhhcCcccccc-CCCCCCC----ccccccccceeEEecc---ceehhhHHHHHHHH--------------------hcCC
Q 002965 10 FEEGGRDYFQQ-QPSTSSS----SPSILQSLPVHASFDH---GYYLLVKSIQELRE--------------------KKGG 61 (862)
Q Consensus 10 ~~~~~r~~~~~-~~~~~~~----~~~~~~~~~~~~s~~~---~y~~l~~~i~~~~~--------------------~~~~ 61 (862)
|.+++|+.|+. ....+.+ +...+.+++..+++++ .|.++.+.+..... ..++
T Consensus 10 ~~~~~r~~~~~l~~~~~~~~~~~~~~~l~~~~~~i~~~~v~~~y~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 89 (312)
T 3aez_A 10 YVEFDRRQWRALRMSTPLALTEEELVGLRGLGEQIDLLEVEEVYLPLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPV 89 (312)
T ss_dssp EEEEEHHHHHGGGTTCCCCCCHHHHHTTCCTTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCC
T ss_pred ceeECHHHHHHHHhcCCCCCCHHHHHhccCCCCeEEeeehhhhhhhHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCC
Confidence 67899999999 5555554 4445677888999888 88888777654310 1456
Q ss_pred eEEEeecCCCCCCcchHHHHhhhcee-------eEEEeecccccc--------cC-CCCCCCccchHHHHHhhhhhhcCC
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVIG-------CTLISMENYRVG--------VD-EGNDLDSIDFDALVQNLQDLTEGK 125 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg-------~~vI~~D~~~~~--------~~-~~~~~~s~d~~~l~~~L~~l~~~~ 125 (862)
..+|||.|++|||||||++.|+..+. +.++++|.++.. +. ..+.++++|.+.+.+.|..+..+.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~ 169 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVKSGS 169 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTTC
T ss_pred CEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCCc
Confidence 78999999999999999999998652 678999998642 11 135678889888888888887554
Q ss_pred C-ccccccccccccccccceeeccCceEEEEcccchhh----HhhhhccceEEEEEeceeeeeeeeeecccC-----C--
Q 002965 126 D-TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD----ARLRSLLDIRVAVVGGVHFSLISKVQYDIG-----D-- 193 (862)
Q Consensus 126 ~-i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~----~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~-----~-- 193 (862)
. ...|.|++..+.++.........++++|+||+++++ ..+.+.+|++|||+++.+.+..|++.|+.. .
T Consensus 170 ~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~~r~ 249 (312)
T 3aez_A 170 DYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAFAD 249 (312)
T ss_dssp SCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSCCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTGGGS
T ss_pred ccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchHHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhccccC
Confidence 4 678899999998886555556677899999999997 578899999999999999999998887431 1
Q ss_pred ---------ccchhhHHh--------hhhhhhhcccCCCcccceeecCCccc
Q 002965 194 ---------SCSLDSLID--------SIFPLFRKHIEPDLHHAQIRINNRFV 228 (862)
Q Consensus 194 ---------~~~~e~~~~--------~~~p~~~k~Iep~~~~ADiII~N~~~ 228 (862)
..+.+++.+ ...|++.+||+|++.+||+||+|+..
T Consensus 250 ~~~~~~~~~g~s~e~a~~~v~~~~~~~~~p~~~~~i~p~~~~ADlii~~~~~ 301 (312)
T 3aez_A 250 PESHFHHYAAFSDSQAVVAAREIWRTINRPNLVENILPTRPRATLVLRKDAD 301 (312)
T ss_dssp TTSTTGGGTTCCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECTT
T ss_pred cchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHhccCCCCCCeEEEecCCC
Confidence 123333321 23688999999999999999998843
No 12
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.76 E-value=3.5e-19 Score=193.02 Aligned_cols=166 Identities=12% Similarity=0.220 Sum_probs=126.2
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhcee-----eEEEeecccccc-c---------------CCCCC--CCccchHHHHHh
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVG-V---------------DEGND--LDSIDFDALVQN 117 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~-~---------------~~~~~--~~s~d~~~l~~~ 117 (862)
++++|||+|++||||||+|+.|++.+| +.+|++|+||+. . ...+. ++++|.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r~~~~~~~~~~~~~~~~g~~~~~~fg~~~~d~~~l~~~ 83 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELERV 83 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhcCCHHHhhhhhhhhhhccCcCcCCCChhhhcHHHHHHH
Confidence 456899999999999999999999888 899999999862 1 12223 788898888888
Q ss_pred hhhhhcCCCcccccccc-----ccccccccce---eec-cCceEEEEcccchh----hHhhhhccceEEEEEeceeeeee
Q 002965 118 LQDLTEGKDTLIPMFDY-----QQKNRIGSKV---IKG-ASSGVVIVDGTYAL----DARLRSLLDIRVAVVGGVHFSLI 184 (862)
Q Consensus 118 L~~l~~~~~i~~p~~~~-----~~~~~~~~~~---~~~-~~~~vVIvEG~~l~----~~~l~~~~D~~I~Vda~~~~~l~ 184 (862)
+..+..++.+..|.|++ ..+.+..... ... ...+++|+||++++ +..+.+.+|++|||+++.+.+++
T Consensus 84 l~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~~~~~v~~~~D~~IfV~a~~~~rl~ 163 (290)
T 1a7j_A 84 FREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEWI 163 (290)
T ss_dssp HHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBCGGGCSEEEEEEECHHHHHH
T ss_pred HHHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEecccccccchHhHHHhCCEEEEEECCHHHHHH
Confidence 88888888888898854 2222222111 112 34679999999997 46788899999999999999999
Q ss_pred eeeecccCCc-cchhh---HHhhhhhhhhcccCCCccccee------ecCCc
Q 002965 185 SKVQYDIGDS-CSLDS---LIDSIFPLFRKHIEPDLHHAQI------RINNR 226 (862)
Q Consensus 185 R~i~RD~~~~-~~~e~---~~~~~~p~~~k~Iep~~~~ADi------II~N~ 226 (862)
|++.||...+ .+.++ .+..++|.+.+||+|.+++||+ +|+|+
T Consensus 164 Rrl~Rd~~~RG~s~e~v~~~i~~r~~~~~r~i~p~~~~AD~~~~~~~vIDns 215 (290)
T 1a7j_A 164 QKIHRDRATRGYTTEAVTDVILRRMHAYVHCIVPQFSQTDINFQRVPVVDTS 215 (290)
T ss_dssp HHHHHTSSSCCSCCCCHHHHHHHHHHHHHHHTGGGGGTCSEEEEEEESSCCS
T ss_pred HHhhhhhhhcCCChHHHHHHHHHhCccHHHhhhhhhccCCEeeccCceecCC
Confidence 9999996554 23333 3334589999999999999999 89987
No 13
>3n10_A Adenylate cyclase 2; CYTH domain, antiparallel barrel, product complex, cyclic AM; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0z_A* 3n0y_A* 2fjt_A
Probab=99.75 E-value=7.1e-19 Score=177.30 Aligned_cols=128 Identities=13% Similarity=0.148 Sum_probs=111.9
Q ss_pred cccCCcccccceeeeeccCCCchhhhhcccceeeeec--ceeEEEeeCceeeeccceeeccccceeeec----eeccchh
Q 002965 252 AFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQS--GIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLGGLL 325 (862)
Q Consensus 252 ~~~~~~~e~d~Y~~~~~r~~~~~~~al~~~~lRiR~~--~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v----~~~~~L~ 325 (862)
.+.....|.|.||+.|+++++..+.++ |||.. +...++|||||+ .+.|.++.| .|..+|.
T Consensus 34 ~~~~~~~q~d~Yfd~p~~~l~~~~~~l-----RiR~~~~~~~~~lt~kg~~---------~~~e~e~~v~~~~~~~~~l~ 99 (179)
T 3n10_A 34 AFTLNNHEKDIYLDANGQDLAKQQISM-----VLREMNPSGIRLWIVKGPG---------AERCEASNIEDVSKVQSMLA 99 (179)
T ss_dssp EEEEEEEEEEEEEECTTCTTGGGTCEE-----EEEEEETTCCEEEEEECSS---------SSBEEEEECSCHHHHHHHHH
T ss_pred cccceEEEEEEEEeCCChhHHhCCceE-----EEEecCCCceEEEEEcCCc---------cccceeeccCCHHHHHHHHH
Confidence 344567789999999999999888877 99976 456889999763 557888888 8999999
Q ss_pred ccccEEEEEEeeceeeEeeCeeEEeeehhccccceEEEEEcC--Cc-------cchhhhhhhccccCCc-chHHHHHHH
Q 002965 326 DLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT--NR-------KTVGAEALRMGINGPW-ITKSYLEMV 394 (862)
Q Consensus 326 ~LGy~~~~~~~K~R~~~~~~~~~v~lD~v~~lG~~FvEiE~~--~~-------~~v~~~~~~Lgl~~~~-~~~sYlel~ 394 (862)
.|||.++++++|.|++|.+++++|+||+|+++|. |+|||+. +. +.+.+++++|||+.+. +++||+||+
T Consensus 100 ~lg~~~~~~~~k~R~~~~~~~~~v~lD~v~~lG~-f~EiE~e~~~~~~~~~~~~~~~~l~~~LGl~~~~~~~~sY~eLL 177 (179)
T 3n10_A 100 TLGYHPAFTIEKQRSIYFVGKFHITVDHLTGLGD-FAEIAIMTDDATELDKLKAECRDFANTFGLQVDQQEPRSYRQLL 177 (179)
T ss_dssp HTTCEEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEEESCGGGHHHHHHHHHHHHHHHTCCGGGBCCSCHHHHH
T ss_pred hCCCeEEEEEEEEEEEEEECCEEEEEEeccCCCc-EEEEEEEeCCCccHHHHHHHHHHHHHHcCcChhhcceecHHHHh
Confidence 9999999999999999999999999999999999 9999987 22 4588999999999876 899999997
No 14
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.75 E-value=2.2e-19 Score=196.45 Aligned_cols=239 Identities=18% Similarity=0.244 Sum_probs=165.6
Q ss_pred ccceeEEeEeeccCCCCCCCc--cccCCcccCceeeeeCCCcc-ccCccchhhHHHHHHHH-------------hcCCCc
Q 002965 454 MEPVLATWHFISSDPSHAGSS--VIGSSSFRDTVKLVPMPDSY-DFDRGLLLSVQAIQALL-------------ENKGLP 517 (862)
Q Consensus 454 ~~~~~~~w~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~i~~~~-------------~~~~~p 517 (862)
......+|+.+....+..+++ +....++.+.+.+..+-..| +..+.+.+.+.+.+.+. ...+.+
T Consensus 11 ~~~~r~~~~~l~~~~~~~~~~~~~~~l~~~~~~i~~~~v~~~y~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g 90 (312)
T 3aez_A 11 VEFDRRQWRALRMSTPLALTEEELVGLRGLGEQIDLLEVEEVYLPLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVP 90 (312)
T ss_dssp EEEEHHHHHGGGTTCCCCCCHHHHHTTCCTTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCC
T ss_pred eeECHHHHHHHHhcCCCCCCHHHHHhccCCCCeEEeeehhhhhhhHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCC
Confidence 346778899767666665554 33333445544443222222 11111111112222221 014678
Q ss_pred EEEeecCCCCCCcchhHhhhcccee-------eeEEeecccccccc----cccC-ccCCCcccchhhhcccchhhcCCcc
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQ----VKDF-KYDDFSSLDLSLLSKNISDIRNGRR 585 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~-------~~vislDdfy~~~~----~~~~-n~~~p~t~D~~lL~~~L~~L~~g~~ 585 (862)
.+|||.||+|||||||++.|+..+. +.++++|+||.+.. .... .++.|.++|.+.+.+.|..+..|..
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~~ 170 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVKSGSD 170 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTTCS
T ss_pred EEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCCcc
Confidence 9999999999999999999998663 67899999987732 1111 2467889999999999999887665
Q ss_pred -ccceeeecccccccCceeeeecccceeEEEcceeccc----Hhhhhccceeeeeecccchheeheeecccccc------
Q 002965 586 -TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH----PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRM------ 654 (862)
Q Consensus 586 -v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~----~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~r------ 654 (862)
+..|.|++..+.|.+.. .....+.+|+|+||++++. ..+.+.+|++|||+++.+.++.|++.|+...+
T Consensus 171 ~~~~~~lS~G~~qRv~~a-~al~~~p~ilIlDep~~~~d~~~~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~~r~ 249 (312)
T 3aez_A 171 YACAPVYSHLHYDIIPGA-EQVVRHPDILILEGLNVLQTGPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAFAD 249 (312)
T ss_dssp CEEEEEEETTTTEEEEEE-EEEECSCSEEEEECTTTTCCCSSCCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTGGGS
T ss_pred cCCcccCChhhhhhhhhH-HHhccCCCEEEECCccccCCcchHHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhccccC
Confidence 78899999998887532 2334556999999999986 57899999999999999999999998865322
Q ss_pred ---------cccccc------cceehhhhhhhhhcccccccccccccccCCCCc
Q 002965 655 ---------GCFMSQ------NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPV 693 (862)
Q Consensus 655 ---------g~~~~~------~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~r 693 (862)
|.+.++ .+|...+.|++.+||.|.+.+||+||+|+-+..
T Consensus 250 ~~~~~~~~~g~s~e~a~~~v~~~~~~~~~p~~~~~i~p~~~~ADlii~~~~~~~ 303 (312)
T 3aez_A 250 PESHFHHYAAFSDSQAVVAAREIWRTINRPNLVENILPTRPRATLVLRKDADHS 303 (312)
T ss_dssp TTSTTGGGTTCCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECTTSC
T ss_pred cchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHhccCCCCCCeEEEecCCCCc
Confidence 222221 234445689999999999999999999876543
No 15
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=99.74 E-value=2.6e-19 Score=197.13 Aligned_cols=142 Identities=15% Similarity=0.169 Sum_probs=112.9
Q ss_pred eeEEeeccccccccc---------ccCccCCCcccchhhhcccchhhcCC-----------------------------c
Q 002965 543 CEVVSLESYFKSEQV---------KDFKYDDFSSLDLSLLSKNISDIRNG-----------------------------R 584 (862)
Q Consensus 543 ~~vislDdfy~~~~~---------~~~n~~~p~t~D~~lL~~~L~~L~~g-----------------------------~ 584 (862)
+.+++||+||++... ...+++.|++||..+|.+.+..|++| .
T Consensus 156 v~vi~mDgFh~~~~~L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 235 (359)
T 2ga8_A 156 AQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIP 235 (359)
T ss_dssp EEEEEGGGGBCCHHHHTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTCC
T ss_pred EEEEecCcCCCCHHHHhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccCc
Confidence 347899999998432 23478999999999999999999887 5
Q ss_pred cccceeeecccccccCceeeeecccceeEEEcceecccH-----hhhhccc-----eeeeeecccchheeheeecccccc
Q 002965 585 RTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHP-----EIRKSLD-----LWIAVVGGVHSHLISRVQRDKSRM 654 (862)
Q Consensus 585 ~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~~-----~l~~~~D-----~~I~v~~~~d~rl~Rri~Rd~~~r 654 (862)
.+.+|.||+.++++.+. ...+..+.++||+||++++++ .+++++| +.|||+++.++++.|++.|+.. +
T Consensus 236 ~v~~P~yD~~~~d~~~~-~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rli~R~~~-~ 313 (359)
T 2ga8_A 236 DIFVPGFNHALKDPTPD-QYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQ-S 313 (359)
T ss_dssp CEEEEEEETTTTEEEEE-EEEECTTCCEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHHHHHHHH-T
T ss_pred eEeeccccCccCCCCCC-ceEecCCCCEEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHHHHhhhc-c
Confidence 68999999999998863 333334469999999888863 4678999 9999999999999999999864 4
Q ss_pred cc--cccc--cceehhhhhhhhhcccccccccccccc
Q 002965 655 GC--FMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIR 687 (862)
Q Consensus 655 g~--~~~~--~~~~~~v~p~~~~~I~p~~~~ADivI~ 687 (862)
|. +.++ .++.....|+. +||.|++..||+|+.
T Consensus 314 Gl~~s~eea~~r~~~~d~pN~-~~I~~~~~~ad~i~~ 349 (359)
T 2ga8_A 314 GLVTTIAEGREKFRSNDLLNG-RDIDNHLIKVDNIVH 349 (359)
T ss_dssp TSCSSHHHHHHHHHHCTTTSS-HHHHHTBCCCTTEEE
T ss_pred CCCCCHHHHHHHHHhcCchhh-HhHhhcCCCCCEEEE
Confidence 55 4443 34445567766 899999999999874
No 16
>2dc4_A PH1012 protein, 165AA long hypothetical protein; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.65A {Pyrococcus horikoshii}
Probab=99.74 E-value=9e-19 Score=174.19 Aligned_cols=126 Identities=18% Similarity=0.258 Sum_probs=109.5
Q ss_pred CCcccccceeeeeccCCCchhhhhcccceeeee--cceeEEEeeCceeeeccceeeccccceeeec----eeccchhccc
Q 002965 255 GNEAQTDNFIEMYLRPPSATEEARINDWIKMRQ--SGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLGGLLDLG 328 (862)
Q Consensus 255 ~~~~e~d~Y~~~~~r~~~~~~~al~~~~lRiR~--~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v----~~~~~L~~LG 328 (862)
....|.|.||+.|.+ .+||||. .++++.||||||. + ++. +.+.|+|+.| .|..+|..||
T Consensus 27 ~~~~q~d~Yfdt~~~-----------~~LRiR~~~~~~~~~lT~K~~~-~-g~~--~~~~E~e~~i~~~~~~~~~L~~lg 91 (165)
T 2dc4_A 27 GIEEQEDVYFELPSP-----------KLLRVRKINNTGKSYITYKEIL-D-KRN--EEFYELEFEVQDPEGAIELFKRLG 91 (165)
T ss_dssp EEEEEEEEEECCSTT-----------EEEEEEEETTTTEEEEEEEEEC-S-SSS--CEEEEEEEEBSCHHHHHHHHHHTT
T ss_pred cceeEEEEEEcCCCC-----------CEEEEEEEcCCCEEEEEEeCcC-C-CCc--eeeeEEEEEcCCHHHHHHHHHHcC
Confidence 345799999998754 4569995 5889999999988 4 443 8999999999 7788899999
Q ss_pred cEEEEEEeeceeeEeeCeeEEeeehhccccceEEEEEcCC------ccchhhhhhhccccCCc-chHHHHHHHHH
Q 002965 329 YSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTN------RKTVGAEALRMGINGPW-ITKSYLEMVLE 396 (862)
Q Consensus 329 y~~~~~~~K~R~~~~~~~~~v~lD~v~~lG~~FvEiE~~~------~~~v~~~~~~Lgl~~~~-~~~sYlel~l~ 396 (862)
|.+...++|+|..|.+++++++||.++|+|. |+|||... .+.+.+++++|||+.+. +++||++|+++
T Consensus 92 ~~~~~~~~k~R~~~~~~~~~i~lD~~~~~g~-~~EiE~~~~~~~~~~~~~~~l~~~lgi~~~~~~~~sY~ell~~ 165 (165)
T 2dc4_A 92 FKVQGVVKKRRWIYKLNNVTFELNRVEKAGD-FLDIEVITSNPEEGKKIIWDVARRLGLKEEDVEPKLYIELING 165 (165)
T ss_dssp CCEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEECCSCHHHHHHHHHHHHHHTTCCGGGBCCSCHHHHCC-
T ss_pred CcEEEEEEEEEEEEEECCEEEEEEecCCCcc-EEEEEEEcCCHHHHHHHHHHHHHHcCCCcccceehhHHHHhhC
Confidence 9999999999999999999999999999997 99999874 36789999999999874 99999999864
No 17
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.71 E-value=3.7e-18 Score=180.88 Aligned_cols=164 Identities=23% Similarity=0.447 Sum_probs=128.9
Q ss_pred cCCeEEEeecCCCCCCcchHHHHhhhceeeE----------EEeecccccccC------------CCCCCCccchHHHHH
Q 002965 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCT----------LISMENYRVGVD------------EGNDLDSIDFDALVQ 116 (862)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~----------vI~~D~~~~~~~------------~~~~~~s~d~~~l~~ 116 (862)
..++++|||+|++||||||+|+.|++.+|+. ++++|+||+.+. ..+.|+++|.+.+.+
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l~~ 98 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILK 98 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHHHH
Confidence 3567899999999999999999999988866 899999987432 234678999999999
Q ss_pred hhhhhhcCCCccccccccccccccccceeeccCceEEEEcccchh-hHhhhhccceEEEEEeceeeeeeeeeecccCCc-
Q 002965 117 NLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS- 194 (862)
Q Consensus 117 ~L~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~-~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~- 194 (862)
.|..+..+..+..|.|++..+.+... .......++||+||++++ ++.+.+.+|.+|||+++.+.+++|+..|+...+
T Consensus 99 ~L~~l~~~~~v~~~~~d~~~~~~~~~-~~~~~~~~~vIveG~~~~~~~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~rg 177 (252)
T 1uj2_A 99 TLKEITEGKTVQIPVYDFVSHSRKEE-TVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERG 177 (252)
T ss_dssp HHHHHHTTCCEEEEEEETTTTEEEEE-EEEECCCSEEEEECTTTTSSHHHHHHCSEEEEEECCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHcCCeeecCccccccccCCCc-eeeeCCCcEEEEeeeccccCHHHHHhcCeeEEEeCCHHHHHHHHHHHHHhhhC
Confidence 99999888888899999888776532 222334679999999997 577888899999999999999999998873221
Q ss_pred cchhhHHh----hhhhhhhcccCCCcccceeec
Q 002965 195 CSLDSLID----SIFPLFRKHIEPDLHHAQIRI 223 (862)
Q Consensus 195 ~~~e~~~~----~~~p~~~k~Iep~~~~ADiII 223 (862)
.+.+++.+ +..+.+.++++|.+..||+||
T Consensus 178 ~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI 210 (252)
T 1uj2_A 178 RDLEQILSQYITFVKPAFEEFCLPTKKYADVII 210 (252)
T ss_dssp CCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEE
T ss_pred CCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEE
Confidence 23343333 334567888889999999999
No 18
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.70 E-value=7.6e-18 Score=172.38 Aligned_cols=168 Identities=17% Similarity=0.260 Sum_probs=115.6
Q ss_pred CCCcEEEeecCCCCCCcchhHhhhccce---e--eeEEeeccccccccc-ccCccC-----CCcccchhhhccc-chhhc
Q 002965 514 KGLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYFKSEQV-KDFKYD-----DFSSLDLSLLSKN-ISDIR 581 (862)
Q Consensus 514 ~~~p~iIgI~G~sGSGKTTla~~L~~~l---~--~~vislDdfy~~~~~-~~~n~~-----~p~t~D~~lL~~~-L~~L~ 581 (862)
...+.+|||+|++||||||+++.|+..+ + +.++++|.++++... ...+.. .++++|.+.|.+. +..++
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~l~ 98 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLK 98 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGGTT
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHHHHHh
Confidence 3567999999999999999999999865 2 556788999986321 111111 1478999999875 48888
Q ss_pred CCccccceeeecccccccCceeeeecccceeEEEcceecccHhhhhccceeeeeecccchheeheeeccccccccccccc
Q 002965 582 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQN 661 (862)
Q Consensus 582 ~g~~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~ 661 (862)
.|+.+.+|.|++..+.+.. ......+.++||+||++++.+.+.+.+|..|||++|.++++.|++.|+ . . ...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~vIveg~~l~~~~~~~~~d~~i~v~~~~~~~~~R~~~R~-~---~--~~~ 170 (201)
T 1rz3_A 99 ASHQLTLPFYDHETDTHSK--RTVYLSDSDMIMIEGVFLQRKEWRPFFDFVVYLDCPREIRFARENDQV-K---Q--NIQ 170 (201)
T ss_dssp TCSEEEEEEEETTTTEEEE--EEEECTTCSEEEEEETTTTSTTTGGGCSEEEEECCC--------------------CHH
T ss_pred cCCccccCceeccCCCCCC--ceEEeCCCcEEEEechhhccHHHHhhcCEEEEEeCCHHHHHHHHhcCC-H---H--HHH
Confidence 8989999999998554331 122234568999999999988888999999999999999999999998 1 1 112
Q ss_pred ceehhhhhhhhhccccc--ccccccccccC
Q 002965 662 DIMMTVFPMFQQHIEPH--LVHAHLKIRND 689 (862)
Q Consensus 662 ~~~~~v~p~~~~~I~p~--~~~ADivI~n~ 689 (862)
.+...+.|.+..|+.+. +..||+||+|+
T Consensus 171 ~~~~~~~~~~~~y~~~~~~~~~AD~vI~N~ 200 (201)
T 1rz3_A 171 KFINRYWKAEDYYLETEEPIKRADVVFDMT 200 (201)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHCSEEEC--
T ss_pred HHHhheeHHHHHHhCCCCcHhhCcEEecCC
Confidence 33356778888888766 68999999985
No 19
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.70 E-value=4e-18 Score=174.93 Aligned_cols=175 Identities=26% Similarity=0.430 Sum_probs=143.2
Q ss_pred CCcEEEeecCCCCCCcchhHhhhcccee--eeEEeeccccccc------ccccCccCCCcccchhhhcccchhhcCCccc
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG--CEVVSLESYFKSE------QVKDFKYDDFSSLDLSLLSKNISDIRNGRRT 586 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~--~~vislDdfy~~~------~~~~~n~~~p~t~D~~lL~~~L~~L~~g~~v 586 (862)
+.+.+|||+||+|||||||++.|+..++ +.++++|.||... +...+.++.|+++|.+.+.+.+..+..++.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 83 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRGLPV 83 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcCCCc
Confidence 4678999999999999999999999888 9999999998742 1123346678888988899989888888888
Q ss_pred cceeeecccccccCceeeeecccceeEEEcceeccc-Hhhhhccceeeeeecccchheeheeecccccccccccc--cce
Q 002965 587 KVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDI 663 (862)
Q Consensus 587 ~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~--~~~ 663 (862)
..|.++.+.+.+... .......+++|+||.+++. +.....+|.+||+|++.+.++.|++.|+...+|.+... +++
T Consensus 84 ~~~~~~~s~g~~~~~--~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 84 EMPVYDFRAYTRSPR--RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EECCEETTTTEECSS--CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CCCcccCcccCCCCC--eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 899999999877532 1122446899999999986 67888999999999999999999999987666765543 455
Q ss_pred ehhhhhhhhhcccccccccccccccCCC
Q 002965 664 MMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (862)
Q Consensus 664 ~~~v~p~~~~~I~p~~~~ADivI~n~~~ 691 (862)
...+.|.|..|++|.+..||+||+|+-+
T Consensus 162 ~~~~~~~~~~~~~~~~~~aD~ii~~~~~ 189 (211)
T 3asz_A 162 LEQVKPMHLHFVEPTKRYADVIVPRGGQ 189 (211)
T ss_dssp HHTHHHHHHHTTGGGGGGCSEEEESTTS
T ss_pred HHhhhhhHHHhcccchhcCeEEEeCCCc
Confidence 6667899999999999999999988654
No 20
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.69 E-value=5.5e-18 Score=174.29 Aligned_cols=171 Identities=19% Similarity=0.234 Sum_probs=134.0
Q ss_pred CCCcEEEeecCCCCCCcchhHhhhcccee-----eeEEeeccccccccc----ccC-ccCCCcccchhhhcccchhhcCC
Q 002965 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQV----KDF-KYDDFSSLDLSLLSKNISDIRNG 583 (862)
Q Consensus 514 ~~~p~iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdfy~~~~~----~~~-n~~~p~t~D~~lL~~~L~~L~~g 583 (862)
.+...+|||.||+|||||||++.|+..+. +.++++|+|+.+... ..+ ..+.|.++|...+.+.+..+..|
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 98 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHALKHQ 98 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHHHHHhcC
Confidence 35678999999999999999999998875 679999999886321 111 24568889999999999999999
Q ss_pred ccccceeeecccccccCceeeeeccc-ceeEEEcceeccc-----Hhhhhccceeeeeecccchheeheeeccccccccc
Q 002965 584 RRTKVPIFDLETGARSGFKELEVSED-CGVIIFEGVYALH-----PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCF 657 (862)
Q Consensus 584 ~~v~~P~yd~~~~~r~~~~~~~~~~~-~~vVIvEG~~~~~-----~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~ 657 (862)
+.+..|.||+..+.+.+. ...... .+++|+||+++++ ..+.+.+|.+||++++.+.++.|++.|+. .+|.+
T Consensus 99 ~~i~~p~~d~~~~~~~g~--~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~R~~~R~~-~~g~t 175 (208)
T 3c8u_A 99 ERVIYPLFDRARDIAIAG--AAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRWL-DHGLN 175 (208)
T ss_dssp SCEEEEEEETTTTEEEEE--EEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHHHHHHHHH-HTTCC
T ss_pred CceecccCCccccCCCCC--ceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHHHHHHHHH-hcCCC
Confidence 999999999998876642 222233 3899999999854 24688899999999999999999999863 44655
Q ss_pred ccc--cceehhhhhhhhhccccccccccccccc
Q 002965 658 MSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRN 688 (862)
Q Consensus 658 ~~~--~~~~~~v~p~~~~~I~p~~~~ADivI~n 688 (862)
.+. ..+.....|.+ .|++|.+..||+||+.
T Consensus 176 ~~~~~~~~~~~~~~~~-~~i~~~~~~aD~vi~~ 207 (208)
T 3c8u_A 176 HDAAVARAQGNDLANA-RAIEAARLPADLTWPQ 207 (208)
T ss_dssp HHHHHHHHHTHHHHHH-HHHHTTBCCCSEEEC-
T ss_pred HHHHHHHHHhccHHHH-HHHHhCCCCCCEEeeC
Confidence 543 23333466766 7999999999999864
No 21
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.69 E-value=1.8e-18 Score=178.16 Aligned_cols=157 Identities=17% Similarity=0.135 Sum_probs=124.6
Q ss_pred cCCeEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCC-----------------CCCccchHHHHHhhhhh
Q 002965 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQDL 121 (862)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------------~~~s~d~~~l~~~L~~l 121 (862)
...|.-|||||++||||||+++.|++ +|++++++|.+.+.+...+ ..+.+|+..|.+.++.-
T Consensus 6 ~~~~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d 84 (210)
T 4i1u_A 6 HHHMYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSD 84 (210)
T ss_dssp CCSCCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHC
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCC
Confidence 34578899999999999999999998 9999999999866443322 22578888888877642
Q ss_pred ----hcCCCccccccccccccccccceeeccCceEEEEcccchhh-HhhhhccceEEEEEeceeeeeeeeeecccCCccc
Q 002965 122 ----TEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCS 196 (862)
Q Consensus 122 ----~~~~~i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~~ 196 (862)
...+.+.+|.+.......... ...+++|+|.+++++ ..+...||.+|+|++|++++++|.+.||......
T Consensus 85 ~~~~~~L~~i~HP~I~~~~~~~~~~-----~~~~~vv~d~pLL~E~~~~~~~~D~vi~V~ap~e~r~~Rl~~Rdg~s~ee 159 (210)
T 4i1u_A 85 EDARRRLEAITHPLIRAETEREARD-----AQGPYVIFVVPLLVESRNWKARCDRVLVVDCPVDTQIARVMQRNGFTREQ 159 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-----CCSSSEEEECTTCTTCHHHHHHCSEEEEEECCHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHh-----cCCCEEEEEEecccccCCccccCCeEEEEECCHHHHHHHHHhcCCCCHHH
Confidence 223457778776555444322 234589999999999 9999999999999999999999999999666566
Q ss_pred hhhHHhhhhhhhhcccCCCcccceeecCCc
Q 002965 197 LDSLIDSIFPLFRKHIEPDLHHAQIRINNR 226 (862)
Q Consensus 197 ~e~~~~~~~p~~~k~Iep~~~~ADiII~N~ 226 (862)
...+++.|+|..++ ++.||+||+|+
T Consensus 160 a~~ri~~Q~~~eek-----~~~AD~VIdN~ 184 (210)
T 4i1u_A 160 VEAIIARQATREAR-----LAAADDVIVND 184 (210)
T ss_dssp HHHHHHHSCCHHHH-----HHTCSEEEECS
T ss_pred HHHHHHHcCChHHH-----HHhCCEEEECC
Confidence 66777788888766 78999999998
No 22
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.68 E-value=1.6e-17 Score=169.92 Aligned_cols=164 Identities=18% Similarity=0.316 Sum_probs=111.1
Q ss_pred cCCeEEEeecCCCCCCcchHHHHhhhce---e--eEEEeeccccccc---CCCCC-------CCccchHHHHHhh-hhhh
Q 002965 59 KGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGV---DEGND-------LDSIDFDALVQNL-QDLT 122 (862)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~~---~~~~~-------~~s~d~~~l~~~L-~~l~ 122 (862)
...+.+|||+|++||||||+++.|+..+ | +.++++|.++... ...+. ++++|.+.+.+.+ ..+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~l~ 98 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLK 98 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGGTT
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHHHHHh
Confidence 3567899999999999999999999865 3 5567889987642 12221 2678888887765 5566
Q ss_pred cCCCccccccccccccccccceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecccCCccchhhHHh
Q 002965 123 EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLID 202 (862)
Q Consensus 123 ~~~~i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~~~ 202 (862)
.+..+.+|.|++....... ........++||+||+++++..+.+.+|.+|||++|.+++++|.+.|+ ......+.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vIveg~~l~~~~~~~~~d~~i~v~~~~~~~~~R~~~R~---~~~~~~~~~ 174 (201)
T 1rz3_A 99 ASHQLTLPFYDHETDTHSK-RTVYLSDSDMIMIEGVFLQRKEWRPFFDFVVYLDCPREIRFARENDQV---KQNIQKFIN 174 (201)
T ss_dssp TCSEEEEEEEETTTTEEEE-EEEECTTCSEEEEEETTTTSTTTGGGCSEEEEECCC-----------------CHHHHHH
T ss_pred cCCccccCceeccCCCCCC-ceEEeCCCcEEEEechhhccHHHHhhcCEEEEEeCCHHHHHHHHhcCC---HHHHHHHHh
Confidence 6777888888887433322 223334567999999999988888999999999999999999999998 222333446
Q ss_pred hhhhhhhcccCCC--cccceeecCCc
Q 002965 203 SIFPLFRKHIEPD--LHHAQIRINNR 226 (862)
Q Consensus 203 ~~~p~~~k~Iep~--~~~ADiII~N~ 226 (862)
+++|.++.|+++. +.+||+||+|+
T Consensus 175 ~~~~~~~~y~~~~~~~~~AD~vI~N~ 200 (201)
T 1rz3_A 175 RYWKAEDYYLETEEPIKRADVVFDMT 200 (201)
T ss_dssp HHHHHHHHHHHHHCHHHHCSEEEC--
T ss_pred heeHHHHHHhCCCCcHhhCcEEecCC
Confidence 7889888887555 78999999997
No 23
>2aca_A Putative adenylate cyclase; NESG, VPR19, Q87NV8, structural genomics, PSI, protein structure initiative; 2.25A {Vibrio parahaemolyticus} SCOP: d.63.1.2
Probab=99.66 E-value=7.8e-18 Score=171.15 Aligned_cols=129 Identities=15% Similarity=0.175 Sum_probs=109.3
Q ss_pred CCcccccceeeeeccCCCchhhhhcccceeeeecc--eeEEEeeCceeeeccceeeccccceeeec----eeccchhccc
Q 002965 255 GNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSG--IRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLGGLLDLG 328 (862)
Q Consensus 255 ~~~~e~d~Y~~~~~r~~~~~~~al~~~~lRiR~~~--~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v----~~~~~L~~LG 328 (862)
....|.|.||+.|+++++.++.++ |||..+ +...+|+|||+.++ +.|+.| .+.++|..||
T Consensus 39 ~~~~q~d~YfDtp~~~L~~~~~aL-----RiR~~~~~~~~~~t~Kgp~~~~---------~~e~~v~d~~~~~~~L~~lg 104 (189)
T 2aca_A 39 ENNQESDWFYDTPQRTLTQQGKSL-----VLREIQPAGIKLWIVKGPEADR---------CEATNITKLDSAQSMLENMG 104 (189)
T ss_dssp EEEEEEEEEEECTTCHHHHTTCEE-----EEEEEETTTEEEEEEECSSTTB---------EEEEEBSCHHHHHHHHHHTT
T ss_pred cceEEEEEEEeCCCcchhhCCeEE-----EEEEecCCCcEEEEEcCCCcCc---------eEEEecCCHHHHHHHHHHcC
Confidence 456799999999999999999888 999763 35799999997642 125555 7889999999
Q ss_pred cEEEEEEeeceeeEeeCeeEEeeehhccccceEEEEEcC--C-------ccchhhhhhhccccCCc-chHHHHHHHHHhc
Q 002965 329 YSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT--N-------RKTVGAEALRMGINGPW-ITKSYLEMVLEKK 398 (862)
Q Consensus 329 y~~~~~~~K~R~~~~~~~~~v~lD~v~~lG~~FvEiE~~--~-------~~~v~~~~~~Lgl~~~~-~~~sYlel~l~~~ 398 (862)
|.++++++|.|++|.+++++|+||+++++|. |+|||.. + .+.+.+++++|||.... +++||++|+++..
T Consensus 105 l~~~~~~~k~R~~~~~~~~~v~lD~~~~lg~-f~EiE~e~~~~~~~~~~~~~~~~l~~~lgi~~~~~~~~sY~~ll~~~~ 183 (189)
T 2aca_A 105 YEVIQCSKKIRSIFFVGEFHITLDFLDGFGH-FAEFAIMTDDETALARYRERLVALAQQFHLSEADREHRSYKEILSALE 183 (189)
T ss_dssp CEEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEEESCSGGGTTHHHHHHHHHHHTTCCGGGBCCSCTTTSSCC--
T ss_pred CcEEEEEEEEEEEEEECCEEEEEEcccCCee-EEEEEEEcCCccchHHHHHHHHHHHHHcCcCccccchhhHHHHHHhhh
Confidence 9999999999999999999999999999998 9999965 2 15788999999999875 9999999987654
No 24
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=99.64 E-value=3.9e-17 Score=179.76 Aligned_cols=136 Identities=12% Similarity=0.159 Sum_probs=109.5
Q ss_pred EEEeecccccc-------------cCCCCCCCccchHHHHHhhhhhhcC-----------------------------CC
Q 002965 89 TLISMENYRVG-------------VDEGNDLDSIDFDALVQNLQDLTEG-----------------------------KD 126 (862)
Q Consensus 89 ~vI~~D~~~~~-------------~~~~~~~~s~d~~~l~~~L~~l~~~-----------------------------~~ 126 (862)
.+|++|+||.. ...++.|++||...+.+.+..|+.+ ..
T Consensus 157 ~vi~mDgFh~~~~~L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 236 (359)
T 2ga8_A 157 QIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIPD 236 (359)
T ss_dssp EEEEGGGGBCCHHHHTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTCCC
T ss_pred EEEecCcCCCCHHHHhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccCce
Confidence 47899999852 2356889999999999998888766 56
Q ss_pred ccccccccccccccccceeeccCceEEEEcccchhhH-----hhhhccc-----eEEEEEeceeeeeeeeeecccCCcc-
Q 002965 127 TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDA-----RLRSLLD-----IRVAVVGGVHFSLISKVQYDIGDSC- 195 (862)
Q Consensus 127 i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~-----~l~~~~D-----~~I~Vda~~~~~l~R~i~RD~~~~~- 195 (862)
+..|.||+..+++........+..++||+||++++.+ .+++++| ++|||+++.+++++|+++|+.....
T Consensus 237 v~~P~yD~~~~d~~~~~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rli~R~~~~Gl~ 316 (359)
T 2ga8_A 237 IFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSGLV 316 (359)
T ss_dssp EEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHHHHHHHHTTSC
T ss_pred EeeccccCccCCCCCCceEecCCCCEEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHHHHhhhccCCC
Confidence 8899999999999877666666678999999777753 4678899 9999999999999999999843333
Q ss_pred -chhhHHh----hhhhhhhcccCCCcccceeecCC
Q 002965 196 -SLDSLID----SIFPLFRKHIEPDLHHAQIRINN 225 (862)
Q Consensus 196 -~~e~~~~----~~~p~~~k~Iep~~~~ADiII~N 225 (862)
+.+++.+ ...|+. ++|+|++.+||+|+..
T Consensus 317 ~s~eea~~r~~~~d~pN~-~~I~~~~~~ad~i~~~ 350 (359)
T 2ga8_A 317 TTIAEGREKFRSNDLLNG-RDIDNHLIKVDNIVHI 350 (359)
T ss_dssp SSHHHHHHHHHHCTTTSS-HHHHHTBCCCTTEEEE
T ss_pred CCHHHHHHHHHhcCchhh-HhHhhcCCCCCEEEEe
Confidence 4555444 347877 7999999999999854
No 25
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.62 E-value=2.7e-16 Score=161.66 Aligned_cols=166 Identities=19% Similarity=0.322 Sum_probs=129.2
Q ss_pred cCCeEEEeecCCCCCCcchHHHHhhhcee-----eEEEeecccccc---------cCCCCCCCccchHHHHHhhhhhhcC
Q 002965 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVG---------VDEGNDLDSIDFDALVQNLQDLTEG 124 (862)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~---------~~~~~~~~s~d~~~l~~~L~~l~~~ 124 (862)
.++..+|||.|++|||||||++.|+..+. +.+|++|+++.. ....+.+.+++...+.+.+..+..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 98 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHALKHQ 98 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHHHHHhcC
Confidence 35678999999999999999999998875 788999998542 1123567788988888889988888
Q ss_pred CCccccccccccccccccceeeccCceEEEEcccchhh-----HhhhhccceEEEEEeceeeeeeeeeecccCCccchhh
Q 002965 125 KDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-----ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDS 199 (862)
Q Consensus 125 ~~i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-----~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~ 199 (862)
+.+..|.+++..+...+.........+++|+||.+++. ..+.+.+|.+|||+++.+.+++|.++|+.....+.++
T Consensus 99 ~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~R~~~R~~~~g~t~~~ 178 (208)
T 3c8u_A 99 ERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRWLDHGLNHDA 178 (208)
T ss_dssp SCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHHHHHHHHHHTTCCHHH
T ss_pred CceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHHHHHHHHHhcCCCHHH
Confidence 88999999998877655433333334799999999854 2457889999999999999999999996432334443
Q ss_pred HH---h-hhhhhhhcccCCCcccceeecCC
Q 002965 200 LI---D-SIFPLFRKHIEPDLHHAQIRINN 225 (862)
Q Consensus 200 ~~---~-~~~p~~~k~Iep~~~~ADiII~N 225 (862)
+. . .+.|++ ++++|.+.+||+||++
T Consensus 179 ~~~~~~~~~~~~~-~~i~~~~~~aD~vi~~ 207 (208)
T 3c8u_A 179 AVARAQGNDLANA-RAIEAARLPADLTWPQ 207 (208)
T ss_dssp HHHHHHTHHHHHH-HHHHTTBCCCSEEEC-
T ss_pred HHHHHHhccHHHH-HHHHhCCCCCCEEeeC
Confidence 33 3 467877 7899999999999975
No 26
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.62 E-value=1.9e-16 Score=166.96 Aligned_cols=171 Identities=26% Similarity=0.444 Sum_probs=134.1
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccceeee----------EEeecccccccc--------cccCccCCCcccchhhhccc
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCE----------VVSLESYFKSEQ--------VKDFKYDDFSSLDLSLLSKN 576 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~~~----------vislDdfy~~~~--------~~~~n~~~p~t~D~~lL~~~ 576 (862)
..+.+|||+||+|||||||++.|+..+|.. ++++|+||..-. ...+++++|.++|.+.+.+.
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRT 102 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCCCCCcccccHHHHHHH
Confidence 467899999999999999999999877643 789999886411 12345667888888888888
Q ss_pred chhhcCCccccceeeecccccccCceeeeecccceeEEEcceecc-cHhhhhccceeeeeecccchheeheeeccccccc
Q 002965 577 ISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-HPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMG 655 (862)
Q Consensus 577 L~~L~~g~~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~-~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg 655 (862)
|..+..+.....|.|+...+.|... .....+.+++|+||++++ .+.+.+.+|.+|+++++.+.++.|++.|+. .+|
T Consensus 103 L~~l~~~~~~~~~~ls~g~~~r~~~--~~~~~~~~~lilDg~~~~~~~~l~~~~~~~i~v~th~~~~~~r~~~r~~-~~G 179 (245)
T 2jeo_A 103 LKNIVEGKTVEVPTYDFVTHSRLPE--TTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDV-RRG 179 (245)
T ss_dssp HHHHHTTCCEEECCEETTTTEECSS--CEEECCCSEEEEECTTTTTSHHHHTTCSEEEEEECCHHHHHHHHHHHHT-C--
T ss_pred HHHHHCCCCeecccccccccCccCc--eEEecCCCEEEEeCccccccHHHHHhcCeEEEEECCHHHHHHHHHHHHH-HcC
Confidence 8888777777888898888777643 222345689999999987 478888899999999999999999999987 667
Q ss_pred ccccc--cceehhhhhhhhhccccccccccccccc
Q 002965 656 CFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRN 688 (862)
Q Consensus 656 ~~~~~--~~~~~~v~p~~~~~I~p~~~~ADivI~n 688 (862)
.+.+. .++....++.++.|++|.+..||+||++
T Consensus 180 ~~~e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~ 214 (245)
T 2jeo_A 180 RDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPR 214 (245)
T ss_dssp -CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEES
T ss_pred CCHHHHHHHHHHhhhHhHHHhCCcchhcceEEEcC
Confidence 66554 3455567789999999999999999954
No 27
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.61 E-value=3.6e-16 Score=169.30 Aligned_cols=181 Identities=16% Similarity=0.202 Sum_probs=126.6
Q ss_pred ceehhhHHHHHHHH-hcCCeEEEeecCCCCCCcchHHHHhhhcee-------eEEE-eeccccccc--------------
Q 002965 44 GYYLLVKSIQELRE-KKGGIVTVGIGGPSGSGKTSLAEKLASVIG-------CTLI-SMENYRVGV-------------- 100 (862)
Q Consensus 44 ~y~~l~~~i~~~~~-~~~~~~iIgItG~sGSGKSTlA~~La~~Lg-------~~vI-~~D~~~~~~-------------- 100 (862)
....+++.+..+.+ ..+++.+|||+|++||||||+++.|+..++ +.++ ++|+||...
T Consensus 12 ~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~ 91 (290)
T 1odf_A 12 TIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNK 91 (290)
T ss_dssp HHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCG
T ss_pred HHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccc
Confidence 34446666655433 356789999999999999999999998774 3455 999997631
Q ss_pred --CCCCCCCccchHHHHHhhhhhhcC------CCcccccccccc----ccccccc-eeeccCceEEEEcccchhh-Hh--
Q 002965 101 --DEGNDLDSIDFDALVQNLQDLTEG------KDTLIPMFDYQQ----KNRIGSK-VIKGASSGVVIVDGTYALD-AR-- 164 (862)
Q Consensus 101 --~~~~~~~s~d~~~l~~~L~~l~~~------~~i~~p~~~~~~----~~~~~~~-~~~~~~~~vVIvEG~~l~~-~~-- 164 (862)
..++.|+++|.+.+.+.|..+..+ ..+..|.|++.. +.+.... .... +.+++|+||++++. +.
T Consensus 92 l~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld~~~~ 170 (290)
T 1odf_A 92 LLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFNPILQ 170 (290)
T ss_dssp GGSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCCCCCS
T ss_pred hhhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCCccch
Confidence 223468999999999999999887 567889999887 7765431 2333 67899999998743 21
Q ss_pred -------------------------hhhccceE---EEEEeceeeeeee-eeec--cc-------CCccchhhHHhhhhh
Q 002965 165 -------------------------LRSLLDIR---VAVVGGVHFSLIS-KVQY--DI-------GDSCSLDSLIDSIFP 206 (862)
Q Consensus 165 -------------------------l~~~~D~~---I~Vda~~~~~l~R-~i~R--D~-------~~~~~~e~~~~~~~p 206 (862)
+.+.+|+. |||+++...++.| |+.| +. .......++.++++|
T Consensus 171 ~~~~~~~~~~~l~~~n~~l~~y~~~l~~~~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~v~~~~~~~~p 250 (290)
T 1odf_A 171 GIENNDLLTGDMVDVNAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQVHAFVDRYMP 250 (290)
T ss_dssp CTTTCSSSCTTHHHHHHHHHHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHHHHHHHTTHH
T ss_pred hhhhcccchhhHHHHHHHHHHHHHHHHhhhhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcc
Confidence 23334555 9999977776665 7777 41 111234455566777
Q ss_pred hhhccc-------CCCcccceeecCCc
Q 002965 207 LFRKHI-------EPDLHHAQIRINNR 226 (862)
Q Consensus 207 ~~~k~I-------ep~~~~ADiII~N~ 226 (862)
.|+.|+ .|++ +||+|+..+
T Consensus 251 ~y~~~~~~~~~~~~~~~-~adlvl~~~ 276 (290)
T 1odf_A 251 SYKLYLNDFVRSESLGS-IATLTLGID 276 (290)
T ss_dssp HHHHHHHHHHHHTCSSS-SEEEEEEEC
T ss_pred hHHHHhHHHHHhccCCC-CCCEEEEEC
Confidence 666555 4554 899998766
No 28
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.59 E-value=1.1e-15 Score=156.75 Aligned_cols=167 Identities=25% Similarity=0.428 Sum_probs=129.0
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhcee--eEEEeecccccccC----------CCCCCCccchHHHHHhhhhhhcCCCc
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG--CTLISMENYRVGVD----------EGNDLDSIDFDALVQNLQDLTEGKDT 127 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg--~~vI~~D~~~~~~~----------~~~~~~s~d~~~l~~~L~~l~~~~~i 127 (862)
+++.+|||+|++||||||+++.|+..++ +.++++|.++.... ..+.++.++.+.+.+.+..+..++.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 83 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRGLPV 83 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcCCCc
Confidence 4557899999999999999999999888 99999999876322 12345677888888888877777777
Q ss_pred cccccccccccccccceeeccCceEEEEcccchhh-HhhhhccceEEEEEeceeeeeeeeeecccCCc-cch----hhHH
Q 002965 128 LIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSL----DSLI 201 (862)
Q Consensus 128 ~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~-~~~----e~~~ 201 (862)
.+|.++...+.+.... ......+++++||.+++. +.....+|.+||||++.+.++.|++.|+...+ .+. ..+.
T Consensus 84 ~~~~~~~s~g~~~~~~-~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 84 EMPVYDFRAYTRSPRR-TPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp EECCEETTTTEECSSC-EEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred CCCcccCcccCCCCCe-EEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 8888877766554321 122345799999999986 67788999999999999999999998874222 222 2334
Q ss_pred hhhhhhhhcccCCCcccceeecCCcc
Q 002965 202 DSIFPLFRKHIEPDLHHAQIRINNRF 227 (862)
Q Consensus 202 ~~~~p~~~k~Iep~~~~ADiII~N~~ 227 (862)
.+..|.+.++++|.+.+||+||+|+.
T Consensus 163 ~~~~~~~~~~~~~~~~~aD~ii~~~~ 188 (211)
T 3asz_A 163 EQVKPMHLHFVEPTKRYADVIVPRGG 188 (211)
T ss_dssp HTHHHHHHHTTGGGGGGCSEEEESTT
T ss_pred HhhhhhHHHhcccchhcCeEEEeCCC
Confidence 45578999999999999999999884
No 29
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.58 E-value=1.9e-16 Score=161.43 Aligned_cols=144 Identities=18% Similarity=0.252 Sum_probs=107.5
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCC--------------CCCCCccchHHHHHhhhh----h
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDE--------------GNDLDSIDFDALVQNLQD----L 121 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~--------------~~~~~s~d~~~l~~~L~~----l 121 (862)
....+|||+|++||||||+|+.|++.+|++++++|++++.... .. .+.+|...|.+.++. +
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~-~g~ldr~~L~~~vF~~~~~~ 88 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEEVKEKLVELFGGSVLE-DGKVNRKKLAGIVFESRENL 88 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTHHHHHHHHCGGGBS-SSSBCHHHHHHHHTTCHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHHHHHHHHHHhChhhcC-CCCcCHHHHHHHHhCCHHHH
Confidence 4568999999999999999999999889999999999653321 11 567888877765432 2
Q ss_pred hcCCCccccccccccccccccceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecccCCccchhhHH
Q 002965 122 TEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLI 201 (862)
Q Consensus 122 ~~~~~i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~~ 201 (862)
...+.+.+|.+.......... ...++|+|++++++..+...+|.+|||++|.+++++|. +
T Consensus 89 ~~l~~i~hP~i~~~~~~~~~~------~~~~vv~d~pll~e~~~~~~~d~vi~v~a~~e~r~~Rl--------------i 148 (192)
T 2grj_A 89 KKLELLVHPLMKKRVQEIINK------TSGLIVIEAALLKRMGLDQLCDHVITVVASRETILKRN--------------R 148 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT------CCEEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHC--------------S
T ss_pred HHHHhhhCHHHHHHHHHHHHH------cCCEEEEEEeceeecChHHhCCEEEEEECCHHHHHHHH--------------H
Confidence 223446677766554433221 14689999999999888899999999999999998887 2
Q ss_pred hhhhhhhhcccCCCcccceeecCCcc
Q 002965 202 DSIFPLFRKHIEPDLHHAQIRINNRF 227 (862)
Q Consensus 202 ~~~~p~~~k~Iep~~~~ADiII~N~~ 227 (862)
+.++|. ++++.++.||+||+|+.
T Consensus 149 ~~q~~~---~~~~~~~~AD~vI~n~~ 171 (192)
T 2grj_A 149 EADRRL---KFQEDIVPQGIVVANNS 171 (192)
T ss_dssp SHHHHH---TTCTTCCCCSEEEECSS
T ss_pred HhcCCc---hhhhHHhcCCEEEECCC
Confidence 234455 23455789999999984
No 30
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.54 E-value=4.2e-15 Score=156.65 Aligned_cols=164 Identities=21% Similarity=0.405 Sum_probs=124.5
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceeeE----------EEeecccccccC------------CCCCCCccchHHHHHh
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCT----------LISMENYRVGVD------------EGNDLDSIDFDALVQN 117 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~----------vI~~D~~~~~~~------------~~~~~~s~d~~~l~~~ 117 (862)
+.+.+|||+||+||||||+++.|+..+|.. ++++|.||+.+. ..+.++.++.+.+.+.
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRT 102 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCCCCCcccccHHHHHHH
Confidence 345789999999999999999999877743 789998876322 1223556777777888
Q ss_pred hhhhhcCCCccccccccccccccccceeeccCceEEEEcccchh-hHhhhhccceEEEEEeceeeeeeeeeecccCCccc
Q 002965 118 LQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCS 196 (862)
Q Consensus 118 L~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~-~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~~ 196 (862)
|..+........+.++...+.++... ....+.+++|+||+.++ ...+.+.+|.+|+|+++.+.++.|++.|+.....+
T Consensus 103 L~~l~~~~~~~~~~ls~g~~~r~~~~-~~~~~~~~lilDg~~~~~~~~l~~~~~~~i~v~th~~~~~~r~~~r~~~~G~~ 181 (245)
T 2jeo_A 103 LKNIVEGKTVEVPTYDFVTHSRLPET-TVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDVRRGRD 181 (245)
T ss_dssp HHHHHTTCCEEECCEETTTTEECSSC-EEECCCSEEEEECTTTTTSHHHHTTCSEEEEEECCHHHHHHHHHHHHTC---C
T ss_pred HHHHHCCCCeecccccccccCccCce-EEecCCCEEEEeCccccccHHHHHhcCeEEEEECCHHHHHHHHHHHHHHcCCC
Confidence 88776666667778888877776442 33345679999999987 47788889999999999988999999998633345
Q ss_pred hhhHHhh----hhhhhhcccCCCcccceeecC
Q 002965 197 LDSLIDS----IFPLFRKHIEPDLHHAQIRIN 224 (862)
Q Consensus 197 ~e~~~~~----~~p~~~k~Iep~~~~ADiII~ 224 (862)
.+++.++ ..+.++++++|.++.||+||+
T Consensus 182 ~e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~ 213 (245)
T 2jeo_A 182 LEQILTQYTTFVKPAFEEFCLPTKKYADVIIP 213 (245)
T ss_dssp HHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEE
T ss_pred HHHHHHHHHHhhhHhHHHhCCcchhcceEEEc
Confidence 5555443 456888899999999999993
No 31
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.44 E-value=9.9e-15 Score=148.64 Aligned_cols=149 Identities=15% Similarity=0.221 Sum_probs=110.3
Q ss_pred CCCcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccccc----------cccCccCCCcccchhhhcccc----hh
Q 002965 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ----------VKDFKYDDFSSLDLSLLSKNI----SD 579 (862)
Q Consensus 514 ~~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~----------~~~~n~~~p~t~D~~lL~~~L----~~ 579 (862)
.....+|||+|++||||||+|+.|++.+|+.++++|++++... .+...++ ++++|...|.+.+ ..
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~-~g~ldr~~L~~~vF~~~~~ 87 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEEVKEKLVELFGGSVLE-DGKVNRKKLAGIVFESREN 87 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTHHHHHHHHCGGGBS-SSSBCHHHHHHHHTTCHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHHHHHHHHHHhChhhcC-CCCcCHHHHHHHHhCCHHH
Confidence 3457899999999999999999999988999999999987521 1222344 7888988887632 23
Q ss_pred hcCCccccceeeecccccccCceeeeecccceeEEEcceecccHhhhhccceeeeeecccchheeheeeccccccccccc
Q 002965 580 IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS 659 (862)
Q Consensus 580 L~~g~~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~ 659 (862)
++..+.+.+|.++.....+.. ....++|+||.+++...+...+|..|||++|.++++.|.+.+
T Consensus 88 ~~~l~~i~hP~i~~~~~~~~~-------~~~~~vv~d~pll~e~~~~~~~d~vi~v~a~~e~r~~Rli~~---------- 150 (192)
T 2grj_A 88 LKKLELLVHPLMKKRVQEIIN-------KTSGLIVIEAALLKRMGLDQLCDHVITVVASRETILKRNREA---------- 150 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------TCCEEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHCSSH----------
T ss_pred HHHHHhhhCHHHHHHHHHHHH-------HcCCEEEEEEeceeecChHHhCCEEEEEECCHHHHHHHHHHh----------
Confidence 444566788887766544331 113699999999988788889999999999999999988211
Q ss_pred ccceehhhhhhhhhcccccccccccccccCC
Q 002965 660 QNDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (862)
Q Consensus 660 ~~~~~~~v~p~~~~~I~p~~~~ADivI~n~~ 690 (862)
| .|. |+++.+..||++|+|+.
T Consensus 151 --q-----~~~---~~~~~~~~AD~vI~n~~ 171 (192)
T 2grj_A 151 --D-----RRL---KFQEDIVPQGIVVANNS 171 (192)
T ss_dssp --H-----HHH---TTCTTCCCCSEEEECSS
T ss_pred --c-----CCc---hhhhHHhcCCEEEECCC
Confidence 1 122 33455688999999874
No 32
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.43 E-value=8e-15 Score=158.06 Aligned_cols=160 Identities=17% Similarity=0.224 Sum_probs=105.0
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCC-----------------CCccchHHHHHhhhh--
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGND-----------------LDSIDFDALVQNLQD-- 120 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~-----------------~~s~d~~~l~~~L~~-- 120 (862)
+++++|||+|++||||||+|+.|++ +|+.+|++|++++.....+. .+.+|...+...++.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~~ 151 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN-LGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNK 151 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH-HTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTCH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCCH
Confidence 5678999999999999999999994 89999999998553222111 134555554332221
Q ss_pred --hhcCCCccccccccccccccccceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecccCCccchh
Q 002965 121 --LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLD 198 (862)
Q Consensus 121 --l~~~~~i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~~~e 198 (862)
+...+.+.+|.+.......... ......++||+||+++++..+...+|.+|||++|.+++++|...|+........
T Consensus 152 ~~~~~l~~i~~P~i~~~~~~~~~~--~~~~~~~~vIveg~~l~~~~~~~~~d~vI~l~a~~ev~~~Rl~~R~g~s~e~~~ 229 (281)
T 2f6r_A 152 KQMKILTDIVWPVIAKLAREEMDV--AVAKGKTLCVIDAAMLLEAGWQSMVHEVWTVVIPETEAVRRIVERDGLSEAAAQ 229 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHTTCCEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhhcccChHHHHHHHHHHHH--HhccCCCEEEEEechhhccchHHhCCEEEEEcCCHHHHHHHHHHcCCCCHHHHH
Confidence 1112335556554444333321 111234689999999988777788999999999999999999999743222222
Q ss_pred hHHhhhhhhhhcccCCCcccceeecCCcc
Q 002965 199 SLIDSIFPLFRKHIEPDLHHAQIRINNRF 227 (862)
Q Consensus 199 ~~~~~~~p~~~k~Iep~~~~ADiII~N~~ 227 (862)
..+..+++.... ...||++|+|+.
T Consensus 230 ~ri~~q~~~~~~-----~~~AD~vIdn~~ 253 (281)
T 2f6r_A 230 SRLQSQMSGQQL-----VEQSNVVLSTLW 253 (281)
T ss_dssp HHHHTSCCHHHH-----HHTCSEEEECSS
T ss_pred HHHHHcCChHhh-----HhhCCEEEECCC
Confidence 333334443332 257999999984
No 33
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.40 E-value=2.6e-14 Score=146.03 Aligned_cols=155 Identities=19% Similarity=0.222 Sum_probs=93.6
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCC-----------------CCccchHHHHHhhhhh---
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGND-----------------LDSIDFDALVQNLQDL--- 121 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~-----------------~~s~d~~~l~~~L~~l--- 121 (862)
|++|||+|++||||||+++.|++ +|+.++++|++++.....+. .+..+...+.+.+..-
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~ 80 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDED 80 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHH
Confidence 46899999999999999999988 89999999999775432211 0123333332221110
Q ss_pred -hcCCCccccccccccccccccceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecccCCccchhhH
Q 002965 122 -TEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL 200 (862)
Q Consensus 122 -~~~~~i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~ 200 (862)
.....+.+|.+.......... . ....+|++|+++++..+...||.+|||++|.+++++|...|+........+.
T Consensus 81 ~~~l~~~~~p~v~~~~~~~~~~----~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~e~~~~r 155 (206)
T 1jjv_A 81 KLWLNNLLHPAIRERMKQKLAE----Q-TAPYTLFVVPLLIENKLTALCDRILVVDVSPQTQLARSAQRDNNNFEQIQRI 155 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----C-CSSEEEEECTTTTTTTCGGGCSEEEEEECCHHHHHHHHC-----CHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHh----c-CCCEEEEEechhhhcCcHhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence 000112334333222211110 1 2347899999888766778899999999999999999999974332233333
Q ss_pred HhhhhhhhhcccCCCcccceeecCCcc
Q 002965 201 IDSIFPLFRKHIEPDLHHAQIRINNRF 227 (862)
Q Consensus 201 ~~~~~p~~~k~Iep~~~~ADiII~N~~ 227 (862)
++.+.+.... ...||++|+|+.
T Consensus 156 ~~~q~~~~~~-----~~~ad~vIdn~~ 177 (206)
T 1jjv_A 156 MNSQVSQQER-----LKWADDVINNDA 177 (206)
T ss_dssp HHHSCCHHHH-----HHHCSEEEECCS
T ss_pred HHhcCChHHH-----HHhCCEEEECCC
Confidence 3433343332 457999999984
No 34
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.36 E-value=3.1e-13 Score=138.16 Aligned_cols=157 Identities=15% Similarity=0.220 Sum_probs=103.5
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhce-eeEEEeecccccccCC----------CCCCCccchHHHHHhhhhhhcCCCcc
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVI-GCTLISMENYRVGVDE----------GNDLDSIDFDALVQNLQDLTEGKDTL 128 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~L-g~~vI~~D~~~~~~~~----------~~~~~s~d~~~l~~~L~~l~~~~~i~ 128 (862)
+.+.+|||+|++||||||+++.|++.+ ++.++++|+++..... .+.+++++...+.+.+..+..+ ..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~--~~ 96 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISCWMES--AR 96 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHHH--HT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHHHHhC--CC
Confidence 456899999999999999999999988 8999999998653211 1223456666666655544322 11
Q ss_pred ccccccccccccccceeeccCceEEEEcccchhh-HhhhhccceEEEEEeceeeeeeeeeecccCCccchhhHHhhhhhh
Q 002965 129 IPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPL 207 (862)
Q Consensus 129 ~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~~~~~~p~ 207 (862)
+|.+..... ...+.+++|+||+++++ ..+.+.+|.+||++++.+.+..|+..|..........+...+++.
T Consensus 97 ~~~~~~~~~--------~~~~~~~vi~eg~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~e~~~~~~~~~~~~~ 168 (207)
T 2qt1_A 97 HSVVSTDQE--------SAEEIPILIIEGFLLFNYKPLDTIWNRSYFLTIPYEECKRRRSTRVYQPPDSPGYFDGHVWPM 168 (207)
T ss_dssp TSSCCC-------------CCCCEEEEECTTCTTCGGGTTTCSEEEEEECCHHHHHHHHHHSCCSSCCCTTHHHHTHHHH
T ss_pred CCCcCCCee--------ecCCCCEEEEeehHHcCcHHHHHhcCeeEEEECCHHHHHHHHHHcCCCccchHHHHHHHHhHH
Confidence 222221111 12345799999999886 467788999999999999998888777422111122233366666
Q ss_pred hhcccCCCcccceee--cCCc
Q 002965 208 FRKHIEPDLHHAQIR--INNR 226 (862)
Q Consensus 208 ~~k~Iep~~~~ADiI--I~N~ 226 (862)
|..+++.....||.+ |+|+
T Consensus 169 ~~~~~~~~~~~~~~v~~Id~~ 189 (207)
T 2qt1_A 169 YLKYRQEMQDITWEVVYLDGT 189 (207)
T ss_dssp HHHHHHHGGGCSSCCEEEETT
T ss_pred HHHHHHHHHhcCCeEEEecCC
Confidence 665554445667776 7776
No 35
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.31 E-value=8.8e-13 Score=134.82 Aligned_cols=160 Identities=19% Similarity=0.283 Sum_probs=105.1
Q ss_pred CCCcEEEeecCCCCCCcchhHhhhccce-eeeEEeeccccccccccc------CccCCCcccchhhhcccchhhcCCccc
Q 002965 514 KGLPVIVGIGGPSGSGKTSLAHKMANIV-GCEVVSLESYFKSEQVKD------FKYDDFSSLDLSLLSKNISDIRNGRRT 586 (862)
Q Consensus 514 ~~~p~iIgI~G~sGSGKTTla~~L~~~l-~~~vislDdfy~~~~~~~------~n~~~p~t~D~~lL~~~L~~L~~g~~v 586 (862)
.+.+.+|||+|++||||||+++.|+..+ ++.++++|+|+.+.+... .+++.++++|...+.+.+..+.++.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~-- 95 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISCWMESA-- 95 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHHHH--
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHHHHhCC--
Confidence 4567899999999999999999999988 899999999988643211 1233455667766666655543321
Q ss_pred cceeeecccccccCceeeeecccceeEEEcceeccc-Hhhhhccceeeeeecccchheeheeecccccccccccc-cc-e
Q 002965 587 KVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ-ND-I 663 (862)
Q Consensus 587 ~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~-~~-~ 663 (862)
..|.... ......+.+++|+||++++. +.+.+.+|..+|++++.+.++.|+..|.. ..+. .. +
T Consensus 96 ~~~~~~~---------~~~~~~~~~~vi~eg~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~-----~~e~~~~~~ 161 (207)
T 2qt1_A 96 RHSVVST---------DQESAEEIPILIIEGFLLFNYKPLDTIWNRSYFLTIPYEECKRRRSTRVY-----QPPDSPGYF 161 (207)
T ss_dssp TTSSCCC--------------CCCCEEEEECTTCTTCGGGTTTCSEEEEEECCHHHHHHHHHHSCC-----SSCCCTTHH
T ss_pred CCCCcCC---------CeeecCCCCEEEEeehHHcCcHHHHHhcCeeEEEECCHHHHHHHHHHcCC-----CccchHHHH
Confidence 1221111 11112346899999998875 56788899999999999999988766642 1111 12 2
Q ss_pred ehhhhhhhhhcccccccccccc--cccC
Q 002965 664 MMTVFPMFQQHIEPHLVHAHLK--IRND 689 (862)
Q Consensus 664 ~~~v~p~~~~~I~p~~~~ADiv--I~n~ 689 (862)
...+++.|..+++.....+|.+ |+|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~v~~Id~~ 189 (207)
T 2qt1_A 162 DGHVWPMYLKYRQEMQDITWEVVYLDGT 189 (207)
T ss_dssp HHTHHHHHHHHHHHGGGCSSCCEEEETT
T ss_pred HHHHhHHHHHHHHHHHhcCCeEEEecCC
Confidence 2356677666654445556655 5554
No 36
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.31 E-value=1.2e-13 Score=140.69 Aligned_cols=154 Identities=11% Similarity=0.126 Sum_probs=94.1
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCC-----------------CCccchHHHHHhhhhhh--
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGND-----------------LDSIDFDALVQNLQDLT-- 122 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~-----------------~~s~d~~~l~~~L~~l~-- 122 (862)
|++|+|+|++||||||+++.|++ +|+.++++|++++.....+. .+..+...+.+.+..-.
T Consensus 1 m~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~ 79 (204)
T 2if2_A 1 MKRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEK 79 (204)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHH
T ss_pred CeEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHH
Confidence 35799999999999999999999 89999999998775432111 11333333333221100
Q ss_pred --cCCCccccccccccccccccceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecccCCccchhhH
Q 002965 123 --EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL 200 (862)
Q Consensus 123 --~~~~i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~ 200 (862)
....+..|.+......... ......++|+||+++++..+...+|.+|||+++.+.+.+|...| ........+.
T Consensus 80 ~~~l~~l~~~~v~~~~~~~~~----~~~~~~~vive~~~l~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R-~~~~~~~~~~ 154 (204)
T 2if2_A 80 LRKLEEITHRALYKEIEKITK----NLSEDTLFILEASLLVEKGTYKNYDKLIVVYAPYEVCKERAIKR-GMSEEDFERR 154 (204)
T ss_dssp HHHHHHHHHHHHTTTHHHHHH----HSCTTCCEEEECSCSTTTTCGGGSSEEEEECCCHHHHHHHHHHT-CCCHHHHHHH
T ss_pred HHHHHHhhCHHHHHHHHHHHH----hccCCCEEEEEccccccCCchhhCCEEEEEECCHHHHHHHHHHc-CCCHHHHHHH
Confidence 0001112222111111100 01111689999999888777788999999999999999998887 2222222233
Q ss_pred HhhhhhhhhcccCCCcccceeecCCc
Q 002965 201 IDSIFPLFRKHIEPDLHHAQIRINNR 226 (862)
Q Consensus 201 ~~~~~p~~~k~Iep~~~~ADiII~N~ 226 (862)
++.+.+.. +....||++|+|+
T Consensus 155 ~~~~~~~~-----~~~~~ad~vId~~ 175 (204)
T 2if2_A 155 WKKQMPIE-----EKVKYADYVIDNS 175 (204)
T ss_dssp HTTSCCHH-----HHGGGCSEECCCS
T ss_pred HHhCCChh-----HHHhcCCEEEECC
Confidence 33333332 2356789999988
No 37
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.30 E-value=2.7e-13 Score=139.84 Aligned_cols=156 Identities=18% Similarity=0.127 Sum_probs=97.2
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCC-----------------CCccchHHHHHhhhh---
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGND-----------------LDSIDFDALVQNLQD--- 120 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~-----------------~~s~d~~~l~~~L~~--- 120 (862)
.+++|+|+|++||||||+++.|++ +|+.++++|.+++.....+. .+.++...+...+..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~ 81 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE 81 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence 457899999999999999999998 89999999998775433221 112333333322211
Q ss_pred -hhcCCCccccccccccccccccceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecccCCccchhh
Q 002965 121 -LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDS 199 (862)
Q Consensus 121 -l~~~~~i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~ 199 (862)
+...+.+.+|.+.......... . ...++|+|++++++..+...+|.+|||+++.+.+++|...|+.........
T Consensus 82 ~~~~l~~~~~p~v~~~~~~~~~~----~-~~~~vi~~~~~l~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~ 156 (218)
T 1vht_A 82 EKNWLNALLHPLIQQETQHQIQQ----A-TSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQ 156 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----C-CSSEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHhHCHHHHHHHHHHHHh----c-CCCEEEEEeeeeeccCccccCCEEEEEECCHHHHHHHHHHcCCCCHHHHHH
Confidence 0001112233332221111110 0 234788999888775567789999999999999999988886433223333
Q ss_pred HHhhhhhhhhcccCCCcccceeecCCcc
Q 002965 200 LIDSIFPLFRKHIEPDLHHAQIRINNRF 227 (862)
Q Consensus 200 ~~~~~~p~~~k~Iep~~~~ADiII~N~~ 227 (862)
.+..+.+.+.. ...||++|+|+.
T Consensus 157 ~~~~~~~~~~~-----~~~ad~vId~~~ 179 (218)
T 1vht_A 157 ILAAQATREAR-----LAVADDVIDNNG 179 (218)
T ss_dssp HHHHSCCHHHH-----HHHCSEEEECSS
T ss_pred HHHhcCChHHH-----HHhCCEEEECCC
Confidence 34444444332 457899999884
No 38
>3bhd_A Thtpase, thiamine triphosphatase; hydrolase, structural genomics consortium, CYTH SGC; HET: MSE CIT; 1.50A {Homo sapiens} PDB: 2jmu_A
Probab=99.30 E-value=1.2e-12 Score=137.21 Aligned_cols=134 Identities=13% Similarity=0.078 Sum_probs=106.0
Q ss_pred cCCcccccceeeeeccCCCchhhhhcccceeeeecceeEEEeeCceeeeccceeeccccce---eee-------------
Q 002965 254 QGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEF---EVG------------- 317 (862)
Q Consensus 254 ~~~~~e~d~Y~~~~~r~~~~~~~al~~~~lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~---ev~------------- 317 (862)
.....+.|.||+.|+++++..+.++ |||..++ +|+|.|...+.. ..+.|+ +..
T Consensus 49 ~~~~~q~n~YfDTpd~~L~~~~~aL-----RiR~~~~---~tlK~p~~~g~~---~~~~ey~e~~~~~~~~~~~~~~~~~ 117 (234)
T 3bhd_A 49 EYRVTFRDTYYDTPELSLMQADHWL-----RRREDSG---WELKCPGAAGVL---GPHTEYKELTAEPTIVAQLCKVLRA 117 (234)
T ss_dssp EEEEEEEEEEEECTTCHHHHTTCEE-----EEETTTE---EEEEEESSBTTB---CTTSEEEEECSHHHHHHHHHHHHTC
T ss_pred CCcceEEEEEeeCCChHHHhCCcEE-----EEECCCC---eEEecCCccCcc---CCcceeccccCccchhhhhhhhhcC
Confidence 3445699999999999999999888 9998663 889988644321 122333 221
Q ss_pred -c----eeccchhccccEEEEEEeeceeeEee--------C-eeEEeeehhccccceEEEEEcC--C-------ccchhh
Q 002965 318 -R----MTLGGLLDLGYSVVASYKRASTYVVY--------G-NLSVSFETIDTLDETFMVLRGT--N-------RKTVGA 374 (862)
Q Consensus 318 -v----~~~~~L~~LGy~~~~~~~K~R~~~~~--------~-~~~v~lD~v~~lG~~FvEiE~~--~-------~~~v~~ 374 (862)
+ .+..+|..+||.++++++|.|++|.+ + +++|+||.++ +|.||+|||.. + .+.+.+
T Consensus 118 ~~~~~~~~~~~L~~~~l~p~~~~~~~R~~~~l~~~~~~~~~~~~~v~LD~~~-~G~~~~ElElEl~~~~~~~~~~~~l~~ 196 (234)
T 3bhd_A 118 DGLGAGDVAAVLGPLGLQEVASFVTKRSAWKLVLLGADEEEPQLRVDLDTAD-FGYAVGEVEALVHEEAEVPTALEKIHR 196 (234)
T ss_dssp ---CCSSHHHHHHHHTCEEEEEEEEEEEEEEEEGGGGCSSSCEEEEEEEEET-TSCEEEEEEEEESSGGGHHHHHHHHHH
T ss_pred CccchhHHHHHHhcCCCEEEEEEEEEEEEEEEcccCCccCCCeEEEEEeccc-CCCEEEEEEEEeCCcccchHHHHHHHH
Confidence 2 45667788999999999999999999 8 9999999999 99999999965 2 156788
Q ss_pred hhhhccccCCcchHHHHHHHHHhcC
Q 002965 375 EALRMGINGPWITKSYLEMVLEKKG 399 (862)
Q Consensus 375 ~~~~Lgl~~~~~~~sYlel~l~~~~ 399 (862)
+|++|||+.+...++|++.+++.+.
T Consensus 197 la~~Lgl~~~~~~~~k~~~~l~~~~ 221 (234)
T 3bhd_A 197 LSSMLGVPAQETAPAKLIVYLQRFR 221 (234)
T ss_dssp HHHHHTCCTTCCCCCHHHHHHHHHC
T ss_pred HHHHcCCCccccchHHHHHHHHHhC
Confidence 9999999988888888888877543
No 39
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.28 E-value=1.4e-13 Score=141.55 Aligned_cols=159 Identities=21% Similarity=0.158 Sum_probs=112.7
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccc----cc---------cccCccCCCcccchhhhcccch---
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS----EQ---------VKDFKYDDFSSLDLSLLSKNIS--- 578 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~----~~---------~~~~n~~~p~t~D~~lL~~~L~--- 578 (862)
...+-|||+|+.||||||+++.|++ +|+.++++|...+. .. .+..-++.-+++|...|.+.+.
T Consensus 7 ~~~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~ 85 (210)
T 4i1u_A 7 HHMYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDE 85 (210)
T ss_dssp CSCCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCH
T ss_pred cceeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCH
Confidence 4578899999999999999999998 89999999987653 10 1111233457889888888652
Q ss_pred -hhcCCccccceeeecccccccCceeeeecccceeEEEcceeccc-Hhhhhccceeeeeecccchheeheeecccccccc
Q 002965 579 -DIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGC 656 (862)
Q Consensus 579 -~L~~g~~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~ 656 (862)
.++.-+.+.+|..-.....+.. ..+.+++++|.+++++ ..+...+|..|+|++|.++++.|.+.||. .
T Consensus 86 ~~~~~L~~i~HP~I~~~~~~~~~------~~~~~~vv~d~pLL~E~~~~~~~~D~vi~V~ap~e~r~~Rl~~Rdg----~ 155 (210)
T 4i1u_A 86 DARRRLEAITHPLIRAETEREAR------DAQGPYVIFVVPLLVESRNWKARCDRVLVVDCPVDTQIARVMQRNG----F 155 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------TCCSSSEEEECTTCTTCHHHHHHCSEEEEEECCHHHHHHHHHHHHC----C
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH------hcCCCEEEEEEecccccCCccccCCeEEEEECCHHHHHHHHHhcCC----C
Confidence 3344456777775544433221 1234689999999999 99999999999999999999999999983 3
Q ss_pred cccc-cceehhhhhhhhhcccccccccccccccC
Q 002965 657 FMSQ-NDIMMTVFPMFQQHIEPHLVHAHLKIRND 689 (862)
Q Consensus 657 ~~~~-~~~~~~v~p~~~~~I~p~~~~ADivI~n~ 689 (862)
+.+. ........|.. +....||+||+|+
T Consensus 156 s~eea~~ri~~Q~~~e-----ek~~~AD~VIdN~ 184 (210)
T 4i1u_A 156 TREQVEAIIARQATRE-----ARLAAADDVIVND 184 (210)
T ss_dssp CHHHHHHHHHHSCCHH-----HHHHTCSEEEECS
T ss_pred CHHHHHHHHHHcCChH-----HHHHhCCEEEECC
Confidence 2222 11222222322 2347899999997
No 40
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.26 E-value=1.9e-13 Score=138.57 Aligned_cols=157 Identities=14% Similarity=0.107 Sum_probs=96.3
Q ss_pred cCCeEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCC-------------CCccchHHHHHhhhhhh---
Q 002965 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGND-------------LDSIDFDALVQNLQDLT--- 122 (862)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~-------------~~s~d~~~l~~~L~~l~--- 122 (862)
.+++.+|+|+|++||||||+|+.|++. |+.++++|++++... .+. .+.++...+.+.+....
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~-~~~~~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~~~ 82 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR-ENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERL 82 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH-HHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc-CChHHHHHHHHHHHHhCCCcCHHHHHHHHhCCHHHH
Confidence 356789999999999999999999997 999999999875432 110 11233333332211100
Q ss_pred -cCCCccccccccccccccccceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecccCCccchhhHH
Q 002965 123 -EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLI 201 (862)
Q Consensus 123 -~~~~i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~~ 201 (862)
..+.+.+|.+. ...... ....+..+||+||+++++..+.+.+|.+|||+++.+.+++|...|+..........+
T Consensus 83 ~~l~~~~~~~i~---~~~i~~--~~~~g~~~vi~d~~~l~~~~~~~~~d~~i~l~~~~e~~~~R~~~R~~~~~~~~~~~i 157 (203)
T 1uf9_A 83 KALEAVVHPEVR---RLLMEE--LSRLEAPLVFLEIPLLFEKGWEGRLHGTLLVAAPLEERVRRVMARSGLSREEVLARE 157 (203)
T ss_dssp HHHHHHHHHHHH---HHHHHH--HHTCCCSEEEEECTTTTTTTCGGGSSEEEEECCCHHHHHHHHHTTTCCTTHHHHHHH
T ss_pred HHHHHHhChHHH---HHHHHH--hhhcCCCEEEEEecceeccCchhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 00011122221 011100 001225689999998887666677899999999999999999888643322233333
Q ss_pred hhhhhhhhcccCCCcccceeecCCcc
Q 002965 202 DSIFPLFRKHIEPDLHHAQIRINNRF 227 (862)
Q Consensus 202 ~~~~p~~~k~Iep~~~~ADiII~N~~ 227 (862)
..+.+.+. ....||++|+|+.
T Consensus 158 ~~~~~~~~-----~~~~ad~vId~~~ 178 (203)
T 1uf9_A 158 RAQMPEEE-----KRKRATWVLENTG 178 (203)
T ss_dssp TTSCCHHH-----HHHHCSEEECCSS
T ss_pred HHCCChhH-----HHHhCCEEEECCC
Confidence 33344332 1467899999884
No 41
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.21 E-value=6.6e-13 Score=143.03 Aligned_cols=133 Identities=14% Similarity=0.143 Sum_probs=91.0
Q ss_pred CCCcEEEeecCCCCCCcchhHhhhccceeeeEEeeccccccc----c---------cccCccCCCcccchhhhccc-c--
Q 002965 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE----Q---------VKDFKYDDFSSLDLSLLSKN-I-- 577 (862)
Q Consensus 514 ~~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~----~---------~~~~n~~~p~t~D~~lL~~~-L-- 577 (862)
.++|++|||+|++||||||+|+.|+ .+|+.++++|++++.. . .+..-++..+.+|...+... +
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~ 150 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGN 150 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCC
Confidence 3568999999999999999999999 5899999999995421 0 01100111245666555321 1
Q ss_pred -hhhcCCccccceeeecccccccCceeeeecccceeEEEcceecccHhhhhccceeeeeecccchheeheeecc
Q 002965 578 -SDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRD 650 (862)
Q Consensus 578 -~~L~~g~~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd 650 (862)
..+...+.+.+|.+.....++.. ... ..+.++||+||.+++...+...+|..||+++|.++++.|...|+
T Consensus 151 ~~~~~~l~~i~~P~i~~~~~~~~~--~~~-~~~~~~vIveg~~l~~~~~~~~~d~vI~l~a~~ev~~~Rl~~R~ 221 (281)
T 2f6r_A 151 KKQMKILTDIVWPVIAKLAREEMD--VAV-AKGKTLCVIDAAMLLEAGWQSMVHEVWTVVIPETEAVRRIVERD 221 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHH-HTTCCEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHhhcccChHHHHHHHHHHH--HHh-ccCCCEEEEEechhhccchHHhCCEEEEEcCCHHHHHHHHHHcC
Confidence 22333345667766555444331 111 12347899999988877777889999999999999999999886
No 42
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=99.21 E-value=1.2e-12 Score=143.70 Aligned_cols=153 Identities=14% Similarity=0.204 Sum_probs=109.1
Q ss_pred cEEEeecCCCCCCcchhHhhhccceeeeEEeeccc--ccccccccCccCCCcccchhhhcccchhhcCCccccceeeecc
Q 002965 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY--FKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLE 594 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdf--y~~~~~~~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~P~yd~~ 594 (862)
+.+|+|+||+||||||||..|++.+++.+||+|+| |+...... ..|..-+......+|..+..+.. ..|.+||.
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~T---akp~~eE~~~v~hhl~di~~~~~-~~~~~dF~ 82 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGT---AKVTTEEMEGIPHYMIDILPPDA-SFSAYEFK 82 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTT---TCCCTTTTTTCCEESSSCBCTTS-CCCHHHHH
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccc---cCCCHHHHHHHHHHHHHHhCCcc-ccCHHHHH
Confidence 36899999999999999999999999999999999 77532221 11222223334455556666665 78888888
Q ss_pred cccccCceeeeecccceeEEEcceecccHhhhhccceeeeee-cccc--hheeheeecccccccccccccceehhhhhhh
Q 002965 595 TGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVV-GGVH--SHLISRVQRDKSRMGCFMSQNDIMMTVFPMF 671 (862)
Q Consensus 595 ~~~r~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~-~~~d--~rl~Rri~Rd~~~rg~~~~~~~~~~~v~p~~ 671 (862)
.+.+...... ...+..+||++|.+++.+.+.+.+| +|++ ++.+ .|+.|++.| ..++|.. ...+++..+.|.+
T Consensus 83 ~~a~~~i~~i-~~~g~~~IlvGGt~ly~~~l~~~l~--~~~~~~d~~~~~Rlrrrl~r-~~~~G~~-~l~~~L~~vdP~~ 157 (340)
T 3d3q_A 83 KRAEKYIKDI-TRRGKVPIIAGGTGLYIQSLLYNYA--FEDESISEDKMKQVKLKLKE-LEHLNNN-KLHEYLASFDKES 157 (340)
T ss_dssp HHHHHHHHHH-HHTTCEEEEECCCHHHHHHHHBCSC--CC---CCHHHHHHHHHHHHT-TSSSCHH-HHHHHHHHHCHHH
T ss_pred HHHHHHHHHH-HhCCCcEEEECChhhhHHHHHhccc--ccCCCCChHHHHHHHHHHHH-HHhcCHH-HHHHHHHhhCcHH
Confidence 7665432111 1235678889999977777877776 6777 7776 678889988 8888864 2357788899999
Q ss_pred hhccccc
Q 002965 672 QQHIEPH 678 (862)
Q Consensus 672 ~~~I~p~ 678 (862)
.++|+|.
T Consensus 158 a~~I~p~ 164 (340)
T 3d3q_A 158 AKDIHPN 164 (340)
T ss_dssp HHHSCTT
T ss_pred HhhcCcc
Confidence 9999886
No 43
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=99.14 E-value=4.1e-12 Score=139.64 Aligned_cols=170 Identities=17% Similarity=0.138 Sum_probs=115.2
Q ss_pred EEEeecCCCCCCcchHHHHhhhceeeEEEeeccc--ccccCCCC-CCCccchHHHHHhhhhhhcCCCccccccccccccc
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDEGN-DLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR 139 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~~~~-~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~ 139 (862)
++|+|+||+||||||+|..|++.+++.+|++|++ |+++.... .|...+...+.++|.++..+.+ .++.+++....+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~-~~~~~dF~~~a~ 86 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDA-SFSAYEFKKRAE 86 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTS-CCCHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCcc-ccCHHHHHHHHH
Confidence 6899999999999999999999999999999998 88775432 2322233333445556665555 677777766655
Q ss_pred cccceeeccCceEEEEcccchhhHhhhhccceEEEEE-ecee--eeeeeeeecccCCcc--chhhHHhhhhhhhhcccCC
Q 002965 140 IGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVV-GGVH--FSLISKVQYDIGDSC--SLDSLIDSIFPLFRKHIEP 214 (862)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vd-a~~~--~~l~R~i~RD~~~~~--~~e~~~~~~~p~~~k~Iep 214 (862)
........++..+||++|.+++...+...+| +|++ ++.+ .+++|++.| ...++ ...+.++.+.|.+.++|
T Consensus 87 ~~i~~i~~~g~~~IlvGGt~ly~~~l~~~l~--~~~~~~d~~~~~Rlrrrl~r-~~~~G~~~l~~~L~~vdP~~a~~I-- 161 (340)
T 3d3q_A 87 KYIKDITRRGKVPIIAGGTGLYIQSLLYNYA--FEDESISEDKMKQVKLKLKE-LEHLNNNKLHEYLASFDKESAKDI-- 161 (340)
T ss_dssp HHHHHHHHTTCEEEEECCCHHHHHHHHBCSC--CC---CCHHHHHHHHHHHHT-TSSSCHHHHHHHHHHHCHHHHHHS--
T ss_pred HHHHHHHhCCCcEEEECChhhhHHHHHhccc--ccCCCCChHHHHHHHHHHHH-HHhcCHHHHHHHHHhhCcHHHhhc--
Confidence 4332333456678999999988887777665 6777 6666 457777777 54443 33444555567666644
Q ss_pred CcccceeecCCccchhhHhhhhhhccccC-CCCccccccc
Q 002965 215 DLHHAQIRINNRFVSSFREAIYKLKCRSE-APGACSISAF 253 (862)
Q Consensus 215 ~~~~ADiII~N~~~~~~~~~~y~lk~~~~-~l~g~~~~~~ 253 (862)
-+|| +..++++++. ..+|.+.+.+
T Consensus 162 --------~p~d-------~~Ri~RALEv~~~tG~~~s~~ 186 (340)
T 3d3q_A 162 --------HPNN-------RKRVLRAIEYYLKTKKLLSSR 186 (340)
T ss_dssp --------CTTC-------HHHHHHHHHHHHHHCSCSHHH
T ss_pred --------CccC-------chhhhhHHHHHHHhCCChHHH
Confidence 4567 7788888877 5667665544
No 44
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.06 E-value=7.2e-12 Score=127.81 Aligned_cols=158 Identities=20% Similarity=0.194 Sum_probs=87.6
Q ss_pred cEEEeecCCCCCCcchhHhhhccceeeeEEeeccccccccc-------------ccCccCCCcccchhhhcccch----h
Q 002965 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV-------------KDFKYDDFSSLDLSLLSKNIS----D 579 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~-------------~~~n~~~p~t~D~~lL~~~L~----~ 579 (862)
+++|||+|++||||||+++.|+. +|..++++|++++.... +...+...+..+...+.+.+- .
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~ 80 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDED 80 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHH
Confidence 36899999999999999999998 89999999999864110 000011112233322222110 0
Q ss_pred hcCCccccceeeecccccccCceeeeecccceeEEEcceecccHhhhhccceeeeeecccchheeheeeccccccccccc
Q 002965 580 IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS 659 (862)
Q Consensus 580 L~~g~~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~ 659 (862)
+.....+.+|.+.....+.. .. .....+|+||.+++...+...+|..||++++.+.++.|...|+ |.+.+
T Consensus 81 ~~~l~~~~~p~v~~~~~~~~-----~~-~~~~~vv~~~~~l~e~~~~~~~d~vi~l~~~~e~~~~Rl~~R~----~~~~e 150 (206)
T 1jjv_A 81 KLWLNNLLHPAIRERMKQKL-----AE-QTAPYTLFVVPLLIENKLTALCDRILVVDVSPQTQLARSAQRD----NNNFE 150 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HT-CCSSEEEEECTTTTTTTCGGGCSEEEEEECCHHHHHHHHC---------CHH
T ss_pred HHHHHhccCHHHHHHHHHHH-----Hh-cCCCEEEEEechhhhcCcHhhCCEEEEEECCHHHHHHHHHHcC----CCCHH
Confidence 00012233444433221111 00 1235789999887765577889999999999999999999886 22222
Q ss_pred c-cceehhhhhhhhhcccccccccccccccCC
Q 002965 660 Q-NDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (862)
Q Consensus 660 ~-~~~~~~v~p~~~~~I~p~~~~ADivI~n~~ 690 (862)
. .+......+. .+....||++|+|+-
T Consensus 151 ~~~~r~~~q~~~-----~~~~~~ad~vIdn~~ 177 (206)
T 1jjv_A 151 QIQRIMNSQVSQ-----QERLKWADDVINNDA 177 (206)
T ss_dssp HHHHHHHHSCCH-----HHHHHHCSEEEECCS
T ss_pred HHHHHHHhcCCh-----HHHHHhCCEEEECCC
Confidence 1 1111111111 222357899998864
No 45
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.06 E-value=1.1e-11 Score=126.00 Aligned_cols=157 Identities=13% Similarity=0.067 Sum_probs=87.2
Q ss_pred EEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCC----CCCCCccchHHHHHhhhhh--------------hcCC
Q 002965 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDE----GNDLDSIDFDALVQNLQDL--------------TEGK 125 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~----~~~~~s~d~~~l~~~L~~l--------------~~~~ 125 (862)
+|+|+|++||||||+|+.|++.+|+.++++|++++.... .+.+ ..+.+.+.+.+..+ ..|.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 82 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVD-PGDEEGLLALLEGLGVRLLAQAEGNRVLADGE 82 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHTTCEEECCTTCCEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCC-CCCHHHHHHHHHhCceeeeecCCCceEEECCe
Confidence 899999999999999999999999999999999864321 0110 01122222222211 0111
Q ss_pred Ccccccccc---------cccccccc----ceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecccC
Q 002965 126 DTLIPMFDY---------QQKNRIGS----KVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIG 192 (862)
Q Consensus 126 ~i~~p~~~~---------~~~~~~~~----~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~ 192 (862)
.+..+.... ..+..+.. ...... ..+|+||..++ ..+.+.+|++|||++|.+.+++|+..|+..
T Consensus 83 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~vi~g~~~~-~~~~~~~d~~i~l~a~~e~~~~R~~~r~~~ 159 (208)
T 3ake_A 83 DLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP--PPFVAEGRDMG-TAVFPEAAHKFYLTASPEVRAWRRARERPQ 159 (208)
T ss_dssp ECGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC--SCEEEEESSCC-CCCCTTCSEEEEEECCHHHHHHHHHHTSSS
T ss_pred eCchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc--CCEEEEcccee-EEEecCCcEEEEEECCHHHHHHHHHhhccc
Confidence 111000000 00000000 000011 47899999876 345567899999999999999999888642
Q ss_pred CccchhhHHhhhhhhhhcccCCCcccce-eecCCcc
Q 002965 193 DSCSLDSLIDSIFPLFRKHIEPDLHHAQ-IRINNRF 227 (862)
Q Consensus 193 ~~~~~e~~~~~~~p~~~k~Iep~~~~AD-iII~N~~ 227 (862)
......+.+....+.+..+- ...|| ++|+|+.
T Consensus 160 ~~~~~~~~~~~R~~~~~~~~---~~~ad~~~Id~~~ 192 (208)
T 3ake_A 160 AYEEVLRDLLRRDERDKAQS---APAPDALVLDTGG 192 (208)
T ss_dssp CHHHHHHHHHHHHHTC--CC---CCCTTCEEEETTT
T ss_pred CHHHHHHHHHHHHHHHhhcc---cCCCCEEEEECCC
Confidence 21122222222222222211 45687 8888873
No 46
>3v85_A CYTH-like phosphatase; CYTH domain, hydrolase; HET: CIT; 1.90A {Arabidopsis thaliana}
Probab=99.04 E-value=1.6e-10 Score=119.16 Aligned_cols=126 Identities=10% Similarity=0.040 Sum_probs=102.6
Q ss_pred cccCCcccccceeeeeccCCCchhhhhcccceeeeecce-----------eEEEeeCceeeeccceeeccccceeeec--
Q 002965 252 AFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGI-----------RYYLSIGDQRIVDKNFIIRPKAEFEVGR-- 318 (862)
Q Consensus 252 ~~~~~~~e~d~Y~~~~~r~~~~~~~al~~~~lRiR~~~~-----------~~~lt~Kg~~~~~~~~~~k~r~E~ev~v-- 318 (862)
.......|.+.||+.|++.++..+.++ |||..++ +..+|||+|.....+. ..+.|++..+
T Consensus 25 ~~~~~~~~~~~y~dt~~~~l~~~~~~l-----r~R~~~~~~e~~~~~~~~~~~~TlK~~~~~~~~~--~~~~e~~~~~~~ 97 (210)
T 3v85_A 25 YHLKTLHQRNTFFDTPKNDLSLRRAVL-----RLRFLQNAAVSAASPSPPRCIVSLKAKPTLANGI--SRVEEDEEEIEY 97 (210)
T ss_dssp GEEEEEEEEEEEEECTTCHHHHTTEEE-----EEEEEEC------CCCCCEEEEEEEEEEEEETTE--EEEEEEEEEECH
T ss_pred cccceEEEEEEEEeCCCHHHHhCCcEE-----EEEEeCCccceeccCCCcceEEEEecCCcCCCCc--eeEEEEeecCCh
Confidence 344556788999999999999999988 9998654 6789999998888875 6777777654
Q ss_pred -------------------------eeccchhccccEEEEEEeeceeeEeeCeeEEeeehhcc-ccceEEEEEcC--Cc-
Q 002965 319 -------------------------MTLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDT-LDETFMVLRGT--NR- 369 (862)
Q Consensus 319 -------------------------~~~~~L~~LGy~~~~~~~K~R~~~~~~~~~v~lD~v~~-lG~~FvEiE~~--~~- 369 (862)
.+.+++..+||.+.+.++|.|..|.+++..++||++.. .|. |+|||.. |.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~~~l~~~~~~~t~R~e~~~~~~~l~LD~~~~~~g~-~~ELEle~~d~e 176 (210)
T 3v85_A 98 WIGKECVESPAKLSDIGSRVLKRVKEEYGFNDFLGFVCLGGFENVRNVYEWRGVKLEVDETKYDFGN-CYEIECETEEPE 176 (210)
T ss_dssp HHHHHHHHCGGGGGGCCCHHHHHHHHHHTCSCSTTCEEEEEEEEEEEEEEETTEEEEEEEEEETTEE-EEEEEEECSCHH
T ss_pred hHHHHhhhhhhccccCChHHHHHHHHhhccccccceEEEEEEEEEEEEEEeCCEEEEEeeeeeCCcE-EEEEEEEeCCHH
Confidence 22345678999999999999999999999999999984 477 9999987 22
Q ss_pred ---cchhhhhhhccccCCc
Q 002965 370 ---KTVGAEALRMGINGPW 385 (862)
Q Consensus 370 ---~~v~~~~~~Lgl~~~~ 385 (862)
+.+.++++++||.-..
T Consensus 177 ~~~~~~~~lL~~~gI~~~~ 195 (210)
T 3v85_A 177 RVKTMIEEFLTEEKIEFSN 195 (210)
T ss_dssp HHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHcCCCcCc
Confidence 5678888889997644
No 47
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.01 E-value=2.6e-11 Score=118.89 Aligned_cols=154 Identities=19% Similarity=0.184 Sum_probs=86.0
Q ss_pred EEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCcccccccccccccccc
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGS 142 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~~~~ 142 (862)
++|+|+|++||||||+|+.| +.+|..++++|++.+...........+...+...+... .+....... ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~---- 71 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREI-YGDGVVARL----CVE---- 71 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHH-HCTTHHHHH----HHH----
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhh-CCHHHHHHH----HHH----
Confidence 47999999999999999999 88999999999986632211112112222222222211 011110000 000
Q ss_pred ceeeccCceEEEEcccchhh--Hhhhhcc---ceEEEEEeceeeeeeeeeecccCCc-cchhhHHhhhhhhhhcccCCCc
Q 002965 143 KVIKGASSGVVIVDGTYALD--ARLRSLL---DIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSIFPLFRKHIEPDL 216 (862)
Q Consensus 143 ~~~~~~~~~vVIvEG~~l~~--~~l~~~~---D~~I~Vda~~~~~l~R~i~RD~~~~-~~~e~~~~~~~p~~~k~Iep~~ 216 (862)
.........+|++|..... ..+...+ +.+|||++|.+.+.+|...|+.... .+.+++.+++.......+.+..
T Consensus 72 -~l~~~~~~~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 150 (179)
T 3lw7_A 72 -ELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKLGIGEVI 150 (179)
T ss_dssp -HHCSCCCSCEEEECCCCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHHHTHHHHH
T ss_pred -HHHhcCCCeEEEeCCCCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhccChHhHH
Confidence 0001234579999973322 2344444 4899999999999999988875332 3444444432111111123345
Q ss_pred ccceeecCCcc
Q 002965 217 HHAQIRINNRF 227 (862)
Q Consensus 217 ~~ADiII~N~~ 227 (862)
..||++|+|+.
T Consensus 151 ~~ad~vId~~~ 161 (179)
T 3lw7_A 151 AMADYIITNDS 161 (179)
T ss_dssp HTCSEEEECCS
T ss_pred HhCCEEEECCC
Confidence 78999999884
No 48
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.97 E-value=2.5e-11 Score=123.39 Aligned_cols=126 Identities=17% Similarity=0.174 Sum_probs=79.3
Q ss_pred EEEeecCCCCCCcchhHhhhccceeeeEEeeccccccccc-------------ccCccCCCcccchhhhcccchh----h
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV-------------KDFKYDDFSSLDLSLLSKNISD----I 580 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~-------------~~~n~~~p~t~D~~lL~~~L~~----L 580 (862)
.+|+|+|++||||||+++.|+. +|+.++++|+++..... +...+...+..+...|.+.+-. +
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 80 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL 80 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence 4799999999999999999999 89999999999864210 0001111234455444432210 0
Q ss_pred cCCccccceeeecccccccCceeeeecccceeEEEcceecccHhhhhccceeeeeecccchheeheeec
Q 002965 581 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQR 649 (862)
Q Consensus 581 ~~g~~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~R 649 (862)
+.-..+..|.+........ .......++|+||.+++...+...+|..||++++.+.++.|...|
T Consensus 81 ~~l~~l~~~~v~~~~~~~~-----~~~~~~~~vive~~~l~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R 144 (204)
T 2if2_A 81 RKLEEITHRALYKEIEKIT-----KNLSEDTLFILEASLLVEKGTYKNYDKLIVVYAPYEVCKERAIKR 144 (204)
T ss_dssp HHHHHHHHHHHTTTHHHHH-----HHSCTTCCEEEECSCSTTTTCGGGSSEEEEECCCHHHHHHHHHHT
T ss_pred HHHHHhhCHHHHHHHHHHH-----HhccCCCEEEEEccccccCCchhhCCEEEEEECCHHHHHHHHHHc
Confidence 0001122333222211111 000111689999998877667778999999999999999998776
No 49
>3tj7_A GBAA_1210 protein; structural genomics, adenosine monophosphate, center for STR genomics of infectious diseases, csgid; HET: AMP; 2.10A {Bacillus anthracis} PDB: 3sy3_A*
Probab=98.92 E-value=5.4e-10 Score=113.60 Aligned_cols=119 Identities=13% Similarity=0.098 Sum_probs=96.0
Q ss_pred CCcccccceeeeeccCCCchhhhhcccceeeeecceeEEEeeCceeeeccceeeccccceeeec----------------
Q 002965 255 GNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR---------------- 318 (862)
Q Consensus 255 ~~~~e~d~Y~~~~~r~~~~~~~al~~~~lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v---------------- 318 (862)
....+.+.||+.|.++++..+.++ |||..++++.+|+|+|... + +.|+++.+
T Consensus 32 ~~~~~~n~YfDTpd~~L~~~~~~L-----RiR~~~~~~~~TlK~~~~~-g------~~E~~~~l~~~ea~~~l~~~~~p~ 99 (195)
T 3tj7_A 32 VFTKQVNHYFETPNSSLKEAGSAL-----RIRHKGETYTLTLKQPAEV-G------LLETHQVVTENEAKMMMETNVIIS 99 (195)
T ss_dssp CCEEEEEEEEECTTCHHHHTTCEE-----EEEEETTEEEEEEEEECSS-S------EEEEEEEECHHHHHHHHHSSCCCS
T ss_pred ceEEEEEEEEeCCcHhHHhCCCEE-----EEEeECCeEEEEEeeCCCC-C------ceEEEeeCCHHHHHHHhhcCCCCh
Confidence 346788999999999999999998 9999999999999988643 2 35776666
Q ss_pred -eeccchhccccEE-----EEEEeeceeeEeeCeeEEeeehhccccce-E-EEEEcCCc----cchhhhhhhccccCCc
Q 002965 319 -MTLGGLLDLGYSV-----VASYKRASTYVVYGNLSVSFETIDTLDET-F-MVLRGTNR----KTVGAEALRMGINGPW 385 (862)
Q Consensus 319 -~~~~~L~~LGy~~-----~~~~~K~R~~~~~~~~~v~lD~v~~lG~~-F-vEiE~~~~----~~v~~~~~~Lgl~~~~ 385 (862)
.+..+|..+||.. ++.+++.|..|.+.+..++||++.++|.. | +|+|..+. +.+.++++.+|+....
T Consensus 100 ~~i~~~l~~~g~~~~~l~~~g~l~t~R~e~~~~~g~l~LD~~~y~~~~dyElE~E~~d~~~~~~~~~~lL~~~gi~~~~ 178 (195)
T 3tj7_A 100 GAVMNQLCKLQIPVSALTYMGSLTTERAETLFEGGTLVFDHSFYYNHDDYEIEFEVQDEETGKAAFIHLLKQHNIPIRH 178 (195)
T ss_dssp SHHHHHHHHHTCCGGGCEEEEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEEEESCHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHcCCCccceEEEEEEEEEEEEEEecCCEEEEEEecCCCcEEEEEEEEeCCHHHHHHHHHHHHHHCCCCcCC
Confidence 3666899999766 69999999999998889999999988874 3 45554333 5678888899998754
No 50
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.91 E-value=1.1e-10 Score=116.83 Aligned_cols=125 Identities=14% Similarity=0.102 Sum_probs=73.4
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCccccccccccccccc
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG 141 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~~~ 141 (862)
+.+|+|+|++||||||+|+.|++.+|+.++++|++.+.....+. +.--..+.+.+. .|.....+...........
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~--~~~~~~~~~~~~---~g~~~~~~~~~~~l~~~~~ 77 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPD--SQYGELIEKYIK---EGKIVPVEITISLLKREMD 77 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTT--STTHHHHHHHHH---TTCCCCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccC--ChHHHHHHHHHH---CCCcCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999998653221111 111111222221 2221111100000011110
Q ss_pred cceeeccCceEEEEcccchhhH---hhhh------ccceEEEEEeceeeeeeeeeeccc
Q 002965 142 SKVIKGASSGVVIVDGTYALDA---RLRS------LLDIRVAVVGGVHFSLISKVQYDI 191 (862)
Q Consensus 142 ~~~~~~~~~~vVIvEG~~l~~~---~l~~------~~D~~I~Vda~~~~~l~R~i~RD~ 191 (862)
...........+|+||...... .+.. .+|.+||+++|.+.+++|...|+.
T Consensus 78 ~~~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~ 136 (196)
T 1tev_A 78 QTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK 136 (196)
T ss_dssp HHHHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred hhhccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccc
Confidence 0000112345789999865432 1221 468999999999999999888864
No 51
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.89 E-value=3.6e-10 Score=114.89 Aligned_cols=138 Identities=18% Similarity=0.110 Sum_probs=82.6
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCC--CCCCCccchHHHHHhhhhhhcCCCccccccccccccc
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDE--GNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR 139 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~--~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~ 139 (862)
+.+|+|+|++||||||+|+.|++.+|+.++++|.++..... ......+........+..+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~---------------- 81 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAAIGE---------------- 81 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHHHHHH----------------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHHHHHH----------------
Confidence 56899999999999999999999999999999998632100 000001111111111111100
Q ss_pred cccceeeccCceEEEEcccchhh---Hhhhhcc---ceEEEEEeceeeeeeeeeecccCCccchhhHHhhhhhhhhcccC
Q 002965 140 IGSKVIKGASSGVVIVDGTYALD---ARLRSLL---DIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIE 213 (862)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~l~~---~~l~~~~---D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~~~~~~p~~~k~Ie 213 (862)
.. .....+|+++.++.. ..+...+ +.+||++++.+++.+|...|+.... ..+.++.+...++ .
T Consensus 82 ----~~--~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~--~~~~~~~~~~~~~---~ 150 (202)
T 3t61_A 82 ----RL--ASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFM--PSSLLQTQLETLE---D 150 (202)
T ss_dssp ----HH--TSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCC--CHHHHHHHHHHCC---C
T ss_pred ----HH--hcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCC--CHHHHHHHHHhcC---C
Confidence 00 122346777766544 2333332 5899999999999999888864221 2334444433332 3
Q ss_pred CCcccceeecCCc
Q 002965 214 PDLHHAQIRINNR 226 (862)
Q Consensus 214 p~~~~ADiII~N~ 226 (862)
+....++++|+|+
T Consensus 151 ~~~~~~~~~Id~~ 163 (202)
T 3t61_A 151 PRGEVRTVAVDVA 163 (202)
T ss_dssp CTTSTTEEEEESS
T ss_pred CCCCCCeEEEeCC
Confidence 4556789999998
No 52
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.88 E-value=5.7e-11 Score=120.20 Aligned_cols=130 Identities=18% Similarity=0.229 Sum_probs=80.8
Q ss_pred CCCcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccccccc---c--CccCC---Ccccchhhhcccchh----hc
Q 002965 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVK---D--FKYDD---FSSLDLSLLSKNISD----IR 581 (862)
Q Consensus 514 ~~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~---~--~n~~~---p~t~D~~lL~~~L~~----L~ 581 (862)
.+++.+|+|+|++||||||+++.|++. |+.++++|+++.....+ . ..|.. .+++|...|.+.+.. +.
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~~~~~~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~~~~ 83 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLK 83 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhcCChHHHHHHHHHHHHhCCCcCHHHHHHHHhCCHHHHH
Confidence 356899999999999999999999998 99999999998642100 0 01100 123444333321100 00
Q ss_pred CCccccceeeecccccccCceeeeecccceeEEEcceecccHhhhhccceeeeeecccchheeheeecc
Q 002965 582 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRD 650 (862)
Q Consensus 582 ~g~~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd 650 (862)
..+.+.+|.+. ..+.. .. ...+..+||+||.+++...+.+.+|..||++++.+.++.|...|+
T Consensus 84 ~l~~~~~~~i~---~~~i~--~~-~~~g~~~vi~d~~~l~~~~~~~~~d~~i~l~~~~e~~~~R~~~R~ 146 (203)
T 1uf9_A 84 ALEAVVHPEVR---RLLME--EL-SRLEAPLVFLEIPLLFEKGWEGRLHGTLLVAAPLEERVRRVMARS 146 (203)
T ss_dssp HHHHHHHHHHH---HHHHH--HH-HTCCCSEEEEECTTTTTTTCGGGSSEEEEECCCHHHHHHHHHTTT
T ss_pred HHHHHhChHHH---HHHHH--Hh-hhcCCCEEEEEecceeccCchhhCCEEEEEECCHHHHHHHHHHcC
Confidence 01112233332 11110 00 012257999999877766566778999999999999999988775
No 53
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.88 E-value=3.7e-10 Score=119.49 Aligned_cols=166 Identities=14% Similarity=0.090 Sum_probs=84.4
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhceeeEEEeeccccccc------CCCCCCCccchHHHHHhhhhhh-----------c
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGV------DEGNDLDSIDFDALVQNLQDLT-----------E 123 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~------~~~~~~~s~d~~~l~~~L~~l~-----------~ 123 (862)
...+|+|+|++||||||+++.|++.||...+++|.+++.. ...+..+......+...+.-.. .
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 105 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVILE 105 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEEC
Confidence 3468999999999999999999999999999999998532 1111112222223332211100 0
Q ss_pred CCCcccccccccc---------cccc----ccceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecc
Q 002965 124 GKDTLIPMFDYQQ---------KNRI----GSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYD 190 (862)
Q Consensus 124 ~~~i~~p~~~~~~---------~~~~----~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD 190 (862)
+..+.-....... +..+ ...........-+|++|..+..- +.+.+|++|||+|+.+.+.+|+..+.
T Consensus 106 ~~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~~~~~V~~gr~~~~~-v~~~~~~~ifl~A~~e~r~~R~~~~l 184 (252)
T 4e22_A 106 GEDVSNEIRTETVGNTASQAAAFPRVREALLRRQRAFREAPGLIADGRDMGTI-VFPDAPVKIFLDASSQERAHRRMLQL 184 (252)
T ss_dssp TEECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHHTTCCSSCEEEEESSCCCC-CSTTCSEEEEEECCHHHHHHHHHHHH
T ss_pred CeehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhCCCEEEEeceecee-ecCCCCEEEEEECCHHHHHHHHHHHH
Confidence 0000000000000 0000 00000112233578888655321 33447999999999999999987621
Q ss_pred c--CCccchhhHHh----hhhhhhhcccCCCcccce-eecCCcc
Q 002965 191 I--GDSCSLDSLID----SIFPLFRKHIEPDLHHAQ-IRINNRF 227 (862)
Q Consensus 191 ~--~~~~~~e~~~~----~~~p~~~k~Iep~~~~AD-iII~N~~ 227 (862)
. ....+.+++.+ +......+.+.|....|| ++|+|+.
T Consensus 185 ~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts~ 228 (252)
T 4e22_A 185 QERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDSTS 228 (252)
T ss_dssp HHHTCCCCHHHHHHHHC------------CCCCCTTEEEEECSS
T ss_pred HhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeEEEECcC
Confidence 1 01123333332 333444456678888888 7788774
No 54
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=98.87 E-value=1e-10 Score=120.36 Aligned_cols=128 Identities=19% Similarity=0.198 Sum_probs=79.6
Q ss_pred CcEEEeecCCCCCCcchhHhhhccceeeeEEeeccccccccc-------------ccCccCCCcccchhhhcccch----
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV-------------KDFKYDDFSSLDLSLLSKNIS---- 578 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~-------------~~~n~~~p~t~D~~lL~~~L~---- 578 (862)
.+++|+|+|++||||||+++.|++ +|..++++|+++..... +...++..+.++...+...+-
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~ 81 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE 81 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence 478999999999999999999998 89999999999764110 000111123344433332211
Q ss_pred hhcCCccccceeeecccccccCceeeeecccceeEEEcceecccHhhhhccceeeeeecccchheeheeecc
Q 002965 579 DIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRD 650 (862)
Q Consensus 579 ~L~~g~~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd 650 (862)
.+...+.+..|.+......... . .+..++|+|+.++....+...+|..||++++.+.++.|...|+
T Consensus 82 ~~~~l~~~~~p~v~~~~~~~~~--~----~~~~~vi~~~~~l~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 147 (218)
T 1vht_A 82 EKNWLNALLHPLIQQETQHQIQ--Q----ATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRD 147 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--H----CCSSEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHhHCHHHHHHHHHHHH--h----cCCCEEEEEeeeeeccCccccCCEEEEEECCHHHHHHHHHHcC
Confidence 1111122334444322211110 0 0235778898777654467788999999999999999988775
No 55
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.86 E-value=2e-10 Score=120.02 Aligned_cols=166 Identities=17% Similarity=0.188 Sum_probs=92.9
Q ss_pred cCCeEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccC----CCCCCCccchHHHHHhhhhh-------------
Q 002965 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD----EGNDLDSIDFDALVQNLQDL------------- 121 (862)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~----~~~~~~s~d~~~l~~~L~~l------------- 121 (862)
...+.+|+|+|++||||||+++.|++.+|+.++++|++++... ..+.+ .-+.+.+.+.+..+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~f~~~~~~~~~ 91 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLG-VEEVEALLALLDQHPISFGRSETGDQL 91 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCC-TTCHHHHHHHHHHSCCEEEEETTTEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCC-cccHHHHHHHHHhccccccccCCccce
Confidence 3556789999999999999999999999999999999987421 11111 11122222222110
Q ss_pred --hcCCCcccccccccc---------ccc----cccceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeee
Q 002965 122 --TEGKDTLIPMFDYQQ---------KNR----IGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISK 186 (862)
Q Consensus 122 --~~~~~i~~p~~~~~~---------~~~----~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~ 186 (862)
..|+.+....-.... +.. .............+|++|..... .+...+|++|||+++.+.+++|+
T Consensus 92 i~~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~v~~g~~~~~-~~l~~~d~vi~L~a~~e~~~~R~ 170 (236)
T 1q3t_A 92 VFVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVMDGRDIGT-VVLPQAELKIFLVASVDERAERR 170 (236)
T ss_dssp EEETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCEEEECSSCSS-SSGGGCSEEEEEECCHHHHHHHH
T ss_pred EeECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHhcccCCEEEECCcchh-hhccCCCEEEEEECCHHHHHHHH
Confidence 011111000000000 000 00000011123467789876532 24456799999999999999987
Q ss_pred e----ecccC-CccchhhHH-hhhhhhhhcccCCCcccce-eecCCc
Q 002965 187 V----QYDIG-DSCSLDSLI-DSIFPLFRKHIEPDLHHAQ-IRINNR 226 (862)
Q Consensus 187 i----~RD~~-~~~~~e~~~-~~~~p~~~k~Iep~~~~AD-iII~N~ 226 (862)
+ .|... ......+.+ +++.+...+.++|....+| ++|+|+
T Consensus 171 ~~~~~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~~vId~~ 217 (236)
T 1q3t_A 171 YKENIAKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDAVYLDTT 217 (236)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTCEEEECS
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHhhhhhhcccccccccCCEEEEcCC
Confidence 4 33311 111222223 3367777777777776666 888887
No 56
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.84 E-value=1.8e-10 Score=120.40 Aligned_cols=176 Identities=15% Similarity=0.171 Sum_probs=97.5
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccC---CCCCCCccchHHHHHhhhhhh--c-----CCCccc-
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD---EGNDLDSIDFDALVQNLQDLT--E-----GKDTLI- 129 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~---~~~~~~s~d~~~l~~~L~~l~--~-----~~~i~~- 129 (862)
.+++|+|+|++||||||+++.|++.+|+.++++|.+|+... .....+.-|.+.+.+.+..+. . +..+.+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~ 87 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLA 87 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEEC
Confidence 45789999999999999999999999999999999987532 111111223333333322210 0 011110
Q ss_pred ----------cccc---------cccccccccceeeccCc-eEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeec
Q 002965 130 ----------PMFD---------YQQKNRIGSKVIKGASS-GVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQY 189 (862)
Q Consensus 130 ----------p~~~---------~~~~~~~~~~~~~~~~~-~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~R 189 (862)
+.+. ................. .-+|+||--+.. .+.+.+|++|||+|+.+.|.+|+.++
T Consensus 88 g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~~GRd~gt-~V~pda~lkifl~A~~e~Ra~Rr~~~ 166 (233)
T 3r20_A 88 GEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVVEGRDIGT-VVLPDADVKIFLTASAEERARRRNAQ 166 (233)
T ss_dssp TEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEEEESSCCC-CCCTTCSEEEEEECCHHHHHHHHHHH
T ss_pred CeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEEeccccee-EEcCCCCEEEEEECCHHHHHHHHHHH
Confidence 0000 00000000000001122 457888874432 12244789999999999999999864
Q ss_pred ccCC--ccchhhHHh----hhhhhhhcccCCCcccce-eecCCccchhhHhhhhhh
Q 002965 190 DIGD--SCSLDSLID----SIFPLFRKHIEPDLHHAQ-IRINNRFVSSFREAIYKL 238 (862)
Q Consensus 190 D~~~--~~~~e~~~~----~~~p~~~k~Iep~~~~AD-iII~N~~~~~~~~~~y~l 238 (862)
.... ..+.+++.+ +-.....+++.|.+..+| ++|+++ ..++++-.-.+
T Consensus 167 l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs-~l~iee~v~~I 221 (233)
T 3r20_A 167 NVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTS-DMDQAQVIAHL 221 (233)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECT-TSCHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECC-CCCHHHHHHHH
Confidence 3211 123344333 334445567788888877 666665 44555544333
No 57
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.84 E-value=8.8e-10 Score=108.52 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=34.8
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccc
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~ 99 (862)
.|.+|+|+|++||||||+|+.|++.||++++++|.+...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~ 44 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISE 44 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHH
Confidence 467899999999999999999999999999999998664
No 58
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.82 E-value=1.5e-10 Score=119.49 Aligned_cols=163 Identities=15% Similarity=0.127 Sum_probs=81.2
Q ss_pred EEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccC-----CCCCCC-ccchHHHHHhhhh-----------hhcCC
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD-----EGNDLD-SIDFDALVQNLQD-----------LTEGK 125 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~-----~~~~~~-s~d~~~l~~~L~~-----------l~~~~ 125 (862)
.+|+|+|++||||||+++.|++.+|++++++|++++... ...... ......+.+.+.. ...+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEGE 85 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETTE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECCe
Confidence 579999999999999999999999999999999977421 111111 1111112111100 00111
Q ss_pred Cccccccccc---------cccccc----cceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeec--c
Q 002965 126 DTLIPMFDYQ---------QKNRIG----SKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQY--D 190 (862)
Q Consensus 126 ~i~~p~~~~~---------~~~~~~----~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~R--D 190 (862)
.+.-+..+.. .++.+. ...........+|+||..+.+ .+.+.+|++||++++.+.+++|+..+ .
T Consensus 86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~~-~~~~~~d~~i~l~~~~e~~~~R~~~~l~~ 164 (227)
T 1cke_A 86 DVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGT-VVFPDAPVKIFLDASSEERAHRRMLQLQV 164 (227)
T ss_dssp ECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCCC-CCCTTCSEEEEEECCHHHHHHHHHHHHHH
T ss_pred eCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCccc-eEecCCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 0000000000 001110 000011223578999986543 34456899999999999999886542 1
Q ss_pred cCCccchhhHHh----hhhhhhhcccCCCccc-ceeecCCc
Q 002965 191 IGDSCSLDSLID----SIFPLFRKHIEPDLHH-AQIRINNR 226 (862)
Q Consensus 191 ~~~~~~~e~~~~----~~~p~~~k~Iep~~~~-ADiII~N~ 226 (862)
.....+.++..+ +..+.+.+..+|.... ++++|+|+
T Consensus 165 rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~~~~Id~~ 205 (227)
T 1cke_A 165 KGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDST 205 (227)
T ss_dssp HTCCCCHHHHHHHHC-------------CCCCTTCEEEETT
T ss_pred CCccCCHHHHHHHHHHHHHhhhhhcccCccCCCCEEEEeCC
Confidence 111112333322 2234455555665544 45888877
No 59
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.80 E-value=3.9e-10 Score=112.65 Aligned_cols=144 Identities=14% Similarity=0.105 Sum_probs=77.6
Q ss_pred EEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCcccccccccccccccc
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGS 142 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~~~~ 142 (862)
.+|+|+|++||||||+|+.|++.+|+.++++|++++.......++.++ . .+. +.+..........
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g~~~~~~~~-----~------~g~----~~~~~~~~~~~~~ 67 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFA-----T------DGE----QEFRRIEEDVVRA 67 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHSSCHHHHHH-----H------HCH----HHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcCCCHHHHHH-----H------hCh----HHHHHHHHHHHHH
Confidence 359999999999999999999999999999999866432211000000 0 000 0000000000000
Q ss_pred ceeeccCceEEEEcccch-hhHhhhhc--cceEEEEEeceeeeeeeeeecccCC---ccchhhHHhhhhhhhhcccCCCc
Q 002965 143 KVIKGASSGVVIVDGTYA-LDARLRSL--LDIRVAVVGGVHFSLISKVQYDIGD---SCSLDSLIDSIFPLFRKHIEPDL 216 (862)
Q Consensus 143 ~~~~~~~~~vVIvEG~~l-~~~~l~~~--~D~~I~Vda~~~~~l~R~i~RD~~~---~~~~e~~~~~~~p~~~k~Iep~~ 216 (862)
.. .....||..|... +.+..++. ++.+|||++|.+.+.+|...|+... .....+.++.+..... ..+.
T Consensus 68 -~~--~~~~~vi~~g~~~v~~~~~~~~l~~~~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~~~~~~r~---~~~~ 141 (184)
T 2iyv_A 68 -AL--ADHDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRA---PLYR 141 (184)
T ss_dssp -HH--HHCCSEEECCTTGGGSHHHHHHHTTSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHH---HHHH
T ss_pred -HH--hcCCeEEecCCcEEcCHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHH---HHHh
Confidence 00 1122445555332 22222222 6899999999999999887775311 1222333333321111 1123
Q ss_pred ccceeecCCcc
Q 002965 217 HHAQIRINNRF 227 (862)
Q Consensus 217 ~~ADiII~N~~ 227 (862)
..+|++|+|+.
T Consensus 142 ~~~~~~Idt~~ 152 (184)
T 2iyv_A 142 RVATMRVDTNR 152 (184)
T ss_dssp HHCSEEEECSS
T ss_pred ccCCEEEECCC
Confidence 56899999873
No 60
>2gfg_A BH2851; antiparallel barrel, structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, unknow function; 2.12A {Bacillus halodurans}
Probab=98.79 E-value=2.9e-09 Score=108.22 Aligned_cols=114 Identities=11% Similarity=0.072 Sum_probs=92.9
Q ss_pred ccccceeeeeccCCCchhhhhcccceeeeecceeEEEeeCceeeeccceeeccccceeeece-----------------e
Q 002965 258 AQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGRM-----------------T 320 (862)
Q Consensus 258 ~e~d~Y~~~~~r~~~~~~~al~~~~lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v~-----------------~ 320 (862)
.+.+.||+.|+++++..+.++ |||..++++.+|+|+|... .|.|+|+.|. +
T Consensus 35 ~~~n~YfDTpd~~L~~~~~aL-----RiR~~~~~~~~TlK~~~~~-------gR~E~e~~l~~~~~~~~l~~~~~p~~~~ 102 (193)
T 2gfg_A 35 LQRNHYFETDDFQLKKQSSAL-----RIREKEAIFTFTLKQPHPA-------GLLETNQTLSKQEAKLALESAHFPSGEV 102 (193)
T ss_dssp EEEEEEEECTTCHHHHTTCEE-----EEEEETTEEEEEEEEECSS-------SEEEEEEEECHHHHHHHHHHCCCCCSHH
T ss_pred eeEEEeeeCCCHHHHhCCCEE-----EEEeeCCcEEEEEccCCCC-------CCceEeccCCchhhhhhcccccCCcHHH
Confidence 488999999999999999999 9999999999999987642 3789998882 3
Q ss_pred ccchhccccE-----EEEEEeeceeeEeeCeeEEeeehhccccceEEEEEcC--Cc----cchhhhhhhccccC
Q 002965 321 LGGLLDLGYS-----VVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT--NR----KTVGAEALRMGING 383 (862)
Q Consensus 321 ~~~L~~LGy~-----~~~~~~K~R~~~~~~~~~v~lD~v~~lG~~FvEiE~~--~~----~~v~~~~~~Lgl~~ 383 (862)
..+|..+|+. ++..++|.|..|.+++..++||.....|.++.|||.. +. +.+.++++.+|+..
T Consensus 103 ~~~l~~~~~~~~~L~~~~~~~~~R~~~~~~~gev~lD~~~~~~~~~~ElE~El~~~~~~~~~~~~~l~~~gi~~ 176 (193)
T 2gfg_A 103 MDALRDLSIPISQLKHIGTLSTSRAEISYEQGILCLDHSSYLGIEDYEIEFEGTSEEHATVTFQEILKTFSISQ 176 (193)
T ss_dssp HHHHHHTTCCGGGCEEEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHhcCCccceEEEEEEEEEEEEEEeCCcEEEEeccEecCCeeEEEEEEECCcHHHHHHHHHHHHHCCCCc
Confidence 5577778765 4899999999999987799999999888766777754 32 24566777777754
No 61
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.79 E-value=5.8e-10 Score=109.48 Aligned_cols=109 Identities=14% Similarity=0.100 Sum_probs=63.7
Q ss_pred EEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCccccccccccccccccc
Q 002965 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~~~~~ 143 (862)
+|+|+|++||||||+|+.|++.+|+.++++|++........ ...+. .. .+.. .++........
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~g~~------~~~~~---~~--~~~~----~~~~~~~~~l~-- 64 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKREGLS------IPQIF---EK--KGEA----YFRKLEFEVLK-- 64 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTSC------HHHHH---HH--SCHH----HHHHHHHHHHH--
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHcCCC------HHHHH---HH--hChH----HHHHHHHHHHH--
Confidence 69999999999999999999999999999999865432110 00000 00 0000 00000000000
Q ss_pred eeeccCceEEEEcc--cchhhHhhh--hccceEEEEEeceeeeeeeeeecc
Q 002965 144 VIKGASSGVVIVDG--TYALDARLR--SLLDIRVAVVGGVHFSLISKVQYD 190 (862)
Q Consensus 144 ~~~~~~~~vVIvEG--~~l~~~~l~--~~~D~~I~Vda~~~~~l~R~i~RD 190 (862)
.. .....+||.+| ..+...... ..+|.+|||++|.+.+++|...|.
T Consensus 65 ~l-~~~~~~Vi~~g~~~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~r~ 114 (168)
T 2pt5_A 65 DL-SEKENVVISTGGGLGANEEALNFMKSRGTTVFIDIPFEVFLERCKDSK 114 (168)
T ss_dssp HH-TTSSSEEEECCHHHHTCHHHHHHHHTTSEEEEEECCHHHHHHHCBCTT
T ss_pred HH-hccCCeEEECCCCEeCCHHHHHHHHcCCEEEEEECCHHHHHHHHhCCC
Confidence 00 01234666644 333322222 226999999999999999988764
No 62
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.78 E-value=6.7e-10 Score=111.02 Aligned_cols=120 Identities=13% Similarity=0.086 Sum_probs=71.2
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCcccccccccccccc
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI 140 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~~ 140 (862)
.+.+|+|+|++||||||+|+.|++.+|+.++++|++.+.....+.+ ....+.+.+. .+... + +.......
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~---~~~~i~~~~~---~g~~~--~--~~~~~~~l 74 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSK---DGEMIATMIK---NGEIV--P--SIVTVKLL 74 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCT---THHHHHHHHH---TTCCC--C--HHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCH---HHHHHHHHHH---CCCCC--C--HHHHHHHH
Confidence 3578999999999999999999999999999999986533211111 1112222221 11110 0 00000000
Q ss_pred ccceeeccCceEEEEcccchhh---Hhh----hh--ccceEEEEEeceeeeeeeeeeccc
Q 002965 141 GSKVIKGASSGVVIVDGTYALD---ARL----RS--LLDIRVAVVGGVHFSLISKVQYDI 191 (862)
Q Consensus 141 ~~~~~~~~~~~vVIvEG~~l~~---~~l----~~--~~D~~I~Vda~~~~~l~R~i~RD~ 191 (862)
.. .........+|++|..... ..+ .. .+|++|||++|.+.+++|...|+.
T Consensus 75 ~~-~i~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~ 133 (194)
T 1qf9_A 75 KN-AIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGE 133 (194)
T ss_dssp HH-HHHTSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHT
T ss_pred HH-HHHhcCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccc
Confidence 00 0000134578899854322 112 22 578999999999999999888864
No 63
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.77 E-value=2.1e-10 Score=116.49 Aligned_cols=130 Identities=18% Similarity=0.146 Sum_probs=75.1
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeeccccccccc----ccCccCCCcccchhhhccc---------chhhcCCcc
Q 002965 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV----KDFKYDDFSSLDLSLLSKN---------ISDIRNGRR 585 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~----~~~n~~~p~t~D~~lL~~~---------L~~L~~g~~ 585 (862)
+|+|+|++||||||+++.|++.+|..+++.|++++.... ...+++++..++--+..-. ...+..|+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 83 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGED 83 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCee
Confidence 899999999999999999999999999999999975211 1122333222110000000 011112222
Q ss_pred ccceeeecc---------cccccC--cee-eeecccceeEEEcceecccHhhhhccceeeeeecccchheeheeeccc
Q 002965 586 TKVPIFDLE---------TGARSG--FKE-LEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDK 651 (862)
Q Consensus 586 v~~P~yd~~---------~~~r~~--~~~-~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~ 651 (862)
+.-+..... .+...- ... ..... ..+|+||.+++ ..+.+.+|+.||+++|.+.++.|+..|+.
T Consensus 84 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~vi~g~~~~-~~~~~~~d~~i~l~a~~e~~~~R~~~r~~ 158 (208)
T 3ake_A 84 LTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP--PPFVAEGRDMG-TAVFPEAAHKFYLTASPEVRAWRRARERP 158 (208)
T ss_dssp CGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC--SCEEEEESSCC-CCCCTTCSEEEEEECCHHHHHHHHHHTSS
T ss_pred CchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc--CCEEEEcccee-EEEecCCcEEEEEECCHHHHHHHHHhhcc
Confidence 111000000 000000 000 00011 57899999877 34556689999999999999999888753
No 64
>1yem_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Pyrococcus furiosus} SCOP: d.63.1.2
Probab=98.77 E-value=1.1e-08 Score=102.71 Aligned_cols=111 Identities=20% Similarity=0.332 Sum_probs=96.2
Q ss_pred CeEEEE--EecceeeEEeeccccCCCeeeccccceeee-h-hhhhhhhhccceEEEEEEeeeeeeecCeEEEEeeccCCC
Q 002965 750 DCIRVR--ICEGRFALLIREPLREGNFIIQPKVDFDIS-I-STVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDA 825 (862)
Q Consensus 750 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~f~~~-~-~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (862)
.||||| +.++++.|.+..|. +|+...+...++.|. . .+...|.+|||+.+..++.....|.-+++.|++|+++++
T Consensus 50 ~~LRIR~~~~~~~~~lT~K~p~-~g~~k~~~E~e~~v~d~~~~~~iL~~LG~~~~~~i~K~R~~~~~~~~~i~lD~~~~l 128 (179)
T 1yem_A 50 KLLRIRGVHNLKKYYLTFKEIL-DENNEEFYEVEFEIGDFEKAVEVFKRLGFKIQATIKKKRWVYKLNGVTLEVNRVEGI 128 (179)
T ss_dssp EEEEEEEETTTTEEEEEEEEEC-SSSSCEEEEEEEEESCHHHHHHHHHHTTCCEEEEEEEEEEEEEETTEEEEEEEETTT
T ss_pred CEEEEEEEcCCCeEEEEEeccC-CCCccceeEEEEEeCCHHHHHHHHHHCCCcEEEEEEEEEEEEEECCEEEEEEecCCC
Confidence 799999 55899999999999 999887777777775 2 344456688999999999888888889999999999999
Q ss_pred CCCceEEeccC------HHHHhhccceeeecCc-ccceehhccC
Q 002965 826 PSPYLQIKGVD------KEAVAAAGSTLKLDGS-YTTKVMSLAL 862 (862)
Q Consensus 826 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~ 862 (862)
+ .|+.|.... ++.+.+++.+|||+.. .+++||+|+|
T Consensus 129 G-~f~EIE~~~~~~e~~~~~~~~ll~~LGi~~~~~~~~sY~eLl 171 (179)
T 1yem_A 129 G-DFVDIEVISDSPEEAKEKIWEVAKMLGLKEEDVEPRLYLELI 171 (179)
T ss_dssp E-EEEEEEEECSCHHHHHHHHHHHHHHTTCCGGGBCCSCTTTTC
T ss_pred C-CEEEEEEecCChHHHHHHHHHHHHHcCCChhhceehhHHHHH
Confidence 9 799998765 7889999999999988 8999999986
No 65
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.73 E-value=7.6e-10 Score=113.69 Aligned_cols=158 Identities=15% Similarity=0.229 Sum_probs=85.5
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeeccccccc----CCCCCCCccchHHHHHh----hh-------h-hhcCC
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGV----DEGNDLDSIDFDALVQN----LQ-------D-LTEGK 125 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~----~~~~~~~s~d~~~l~~~----L~-------~-l~~~~ 125 (862)
+++|+|+|++||||||+++.|++.+|+.++++|.+++.. ...+... ....+... +. . +..|.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~f~~~~~~g~~i~~~g~ 80 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNKTE--DFAKLVDQTTLDLTYKADKGQCVILDNE 80 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTSCS--CHHHHHHTCCEEEEECTTCCEEEEETTE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhhhH--HHHHHHHhccccccccccccceEEeCCc
Confidence 457999999999999999999999999999999997642 1111100 01110000 00 0 00111
Q ss_pred C-----------------ccccccccccccccccceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeee
Q 002965 126 D-----------------TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQ 188 (862)
Q Consensus 126 ~-----------------i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~ 188 (862)
. +.+|.+........ ........+|++|..+ ...+.+.+|++|||+++.+.+++|++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~----~~~~~~~~~vi~g~~~-~~~~~~~~~~vi~l~a~~e~~~~R~~~ 155 (219)
T 2h92_A 81 DVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQ----KELAAEKGIVMDGRDI-GTVVLPDADLKVYMIASVEERAERRYK 155 (219)
T ss_dssp ECGGGSSSSHHHHHHHHHHTSHHHHHHHHHHH----HHHHTTCCEEEEESSC-CCCCCTTCSEEEEEECCHHHHHHHHHH
T ss_pred cchhhcCcHHHHHHHHHhccCHHHHHHHHHHH----HHhccCCcEEEEcCCc-cceecCCCCEEEEEECCHHHHHHHHHH
Confidence 0 01111110000000 0111233578888744 223445679999999999999998764
Q ss_pred ccc--CCccchhhHHh---hh-hhhhhcccCCCcccce-eecCCc
Q 002965 189 YDI--GDSCSLDSLID---SI-FPLFRKHIEPDLHHAQ-IRINNR 226 (862)
Q Consensus 189 RD~--~~~~~~e~~~~---~~-~p~~~k~Iep~~~~AD-iII~N~ 226 (862)
+.. ....+.+++.+ .+ .+...+.+.|....|| ++|+|+
T Consensus 156 ~~~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~~d~~~Id~~ 200 (219)
T 2h92_A 156 DNQLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTT 200 (219)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCCTTCEEEECT
T ss_pred HHHhcCcccCHHHHHHHHHHHHHhhhhhhccccccCCCeEEEECC
Confidence 311 11113333322 22 3444455556655677 888887
No 66
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.70 E-value=8.5e-09 Score=101.99 Aligned_cols=142 Identities=13% Similarity=0.078 Sum_probs=79.2
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceeeEEEeeccccccc--C--CCCCCCccchHHHHHhhhhhhcCCCccccccccc
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGV--D--EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQ 135 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~--~--~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~ 135 (862)
..+.+|+|+|++||||||+++.|+..+|..+++.|++.... . ..+. .+........+..+ ..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~-----------~~- 71 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGE--PLNDDDRKPWLQAL-----------ND- 71 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTC--CCCHHHHHHHHHHH-----------HH-
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcCc--CCCccccccHHHHH-----------HH-
Confidence 34578999999999999999999998999999999975320 0 0000 00000011111100 00
Q ss_pred cccccccceeeccCceEEEEcccchhh---Hhhhhc-cc-eEEEEEeceeeeeeeeeecccCCccchhhHHhhhhhhhhc
Q 002965 136 QKNRIGSKVIKGASSGVVIVDGTYALD---ARLRSL-LD-IRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRK 210 (862)
Q Consensus 136 ~~~~~~~~~~~~~~~~vVIvEG~~l~~---~~l~~~-~D-~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~~~~~~p~~~k 210 (862)
.. ... ......+|++..++.. ..+... .| .+|||++|.+.+.+|...|+.... ....++.++..++
T Consensus 72 ---~~-~~~--~~~~~~~vi~~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~~~~R~~~R~~~~~--~~~~~~~~~~~~~- 142 (175)
T 1knq_A 72 ---AA-FAM--QRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFF--KTQMLVTQFETLQ- 142 (175)
T ss_dssp ---HH-HHH--HHHCSEEEEECCCCSHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTSTTCCC--CHHHHHHHHHHCC-
T ss_pred ---HH-HHH--HhcCCcEEEEeCchHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhccCCCC--chHHHHHHHHhhh-
Confidence 00 000 0112245666444433 233333 26 789999999999988887753221 1233333333222
Q ss_pred ccCC-CcccceeecCCc
Q 002965 211 HIEP-DLHHAQIRINNR 226 (862)
Q Consensus 211 ~Iep-~~~~ADiII~N~ 226 (862)
.+ +...||++|+|+
T Consensus 143 --~~~~~~~~~~~Id~~ 157 (175)
T 1knq_A 143 --EPGADETDVLVVDID 157 (175)
T ss_dssp --CCCTTCTTEEEEECS
T ss_pred --CcccCCCCeEEEeCC
Confidence 23 456789999988
No 67
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.70 E-value=1.8e-09 Score=107.73 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=34.6
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccc
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~ 99 (862)
+..|.|+|++||||||+|+.|++.+|+.++++|++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~ 42 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEK 42 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHH
Confidence 45788999999999999999999999999999998654
No 68
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.70 E-value=3.2e-09 Score=104.17 Aligned_cols=149 Identities=14% Similarity=0.133 Sum_probs=77.9
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCccccccccccccccc
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG 141 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~~~ 141 (862)
|.+|+|+|++||||||+|+.|++.+|+.+++.|.+..... ....+.+....+..+..+..-.+.. ...+-
T Consensus 1 M~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~--------~~~~~~~~~~~l~~~~~vi~dr~~~--~~~v~ 70 (173)
T 3kb2_A 1 MTLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS--------GNEKLFEHFNKLADEDNVIIDRFVY--SNLVY 70 (173)
T ss_dssp -CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT--------CHHHHHHHHHHHTTCCSEEEESCHH--HHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh--------HHHHHHHHHHHHHhCCCeEEeeeec--chHHH
Confidence 4579999999999999999999999999999999865432 1122222333333333321111000 00000
Q ss_pred cceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecccCCccchhhHHhhhhhhhhcccCCCccccee
Q 002965 142 SKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQI 221 (862)
Q Consensus 142 ~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~~~~~~p~~~k~Iep~~~~ADi 221 (862)
... ......+..+....+ .......|.+||++++.+...+|...|.. . ....+..+.+...|+.....+ ..+++
T Consensus 71 ~~~--~~~~~~~~~~~~~~l-~~~~~~~~~~i~l~~~~e~~~~R~~~r~r-~-~~~~~~~~~~~~~~~~~~~~~-~~~~~ 144 (173)
T 3kb2_A 71 AKK--FKDYSILTERQLRFI-EDKIKAKAKVVYLHADPSVIKKRLRVRGD-E-YIEGKDIDSILELYREVMSNA-GLHTY 144 (173)
T ss_dssp TTT--BTTCCCCCHHHHHHH-HHHHTTTEEEEEEECCHHHHHHHHHHHSC-S-CCCHHHHHHHHHHHHHHHHTC-SSCEE
T ss_pred HHH--HHHhhHhhHHHHHHH-hccCCCCCEEEEEeCCHHHHHHHHHhcCC-c-chhhhHHHHHHHHHHHHHhhc-CCCEE
Confidence 000 000000000000000 11112368999999999999888877631 1 111234444444444433222 35889
Q ss_pred ecCCc
Q 002965 222 RINNR 226 (862)
Q Consensus 222 II~N~ 226 (862)
+|+++
T Consensus 145 ~id~~ 149 (173)
T 3kb2_A 145 SWDTG 149 (173)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 99886
No 69
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.69 E-value=1.5e-09 Score=109.34 Aligned_cols=121 Identities=14% Similarity=0.027 Sum_probs=72.0
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCccccccccccccccc
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG 141 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~~~ 141 (862)
+.+|+|+|++||||||+|+.|++.+|+.++++|++++.....+.+ ....+.+.+. .|..+............+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~---~~~~i~~~~~---~g~~~~~~~~~~~~~~~i~ 85 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESE---RSKLIRDIME---RGDLVPSGIVLELLKEAMV 85 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCH---HHHHHHHHHH---TTCCCCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCH---HHHHHHHHHH---cCCcCCHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999986532211111 0011112211 1221111000000001000
Q ss_pred cceeeccCceEEEEcccchhh---Hhhhh---ccceEEEEEeceeeeeeeeeeccc
Q 002965 142 SKVIKGASSGVVIVDGTYALD---ARLRS---LLDIRVAVVGGVHFSLISKVQYDI 191 (862)
Q Consensus 142 ~~~~~~~~~~vVIvEG~~l~~---~~l~~---~~D~~I~Vda~~~~~l~R~i~RD~ 191 (862)
. .......||+||..... ..+.. .+|++|||++|.+.+.+|...|+.
T Consensus 86 ~---~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~ 138 (199)
T 2bwj_A 86 A---SLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSR 138 (199)
T ss_dssp H---HTTSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCC
T ss_pred c---ccccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCC
Confidence 0 01234579999875432 12222 578999999999999888888864
No 70
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.67 E-value=2.5e-09 Score=104.67 Aligned_cols=155 Identities=20% Similarity=0.234 Sum_probs=80.6
Q ss_pred EEEeecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCCCcccchhhhcccchhhcCCccccceeeeccccc
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGA 597 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~P~yd~~~~~ 597 (862)
.+|+|+|++||||||+|+.| +.+|..++++|++++....... +...++..+.+.+... .|..+.. .....
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~ 71 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEA----KPGERLMDFAKRLREI-YGDGVVA----RLCVE 71 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC-------CCHHHHHHHHHHH-HCTTHHH----HHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcC----CChhHHHHHHHHHHhh-CCHHHHH----HHHHH
Confidence 47899999999999999999 8899999999998875211110 0001111111111000 0111000 00000
Q ss_pred ccCceeeeecccceeEEEcceeccc--Hhhhhcc---ceeeeeecccchheeheeecccccccccccccceehhhhhhhh
Q 002965 598 RSGFKELEVSEDCGVIIFEGVYALH--PEIRKSL---DLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQ 672 (862)
Q Consensus 598 r~~~~~~~~~~~~~vVIvEG~~~~~--~~l~~~~---D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~~~v~p~~~ 672 (862)
... ....+.+|++|..... ..+...+ +..||+++|.+.++.|...|+....+.+.+. +.........
T Consensus 72 -----~l~-~~~~~~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~--~~~r~~~~~~ 143 (179)
T 3lw7_A 72 -----ELG-TSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISE--LIRRDREELK 143 (179)
T ss_dssp -----HHC-SCCCSCEEEECCCCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHH--HHHHHHHHHH
T ss_pred -----HHH-hcCCCeEEEeCCCCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHH--HHHHHHhhhc
Confidence 000 1235789999972221 2344444 4899999999999999888864322222211 1111100000
Q ss_pred hcccccccccccccccCC
Q 002965 673 QHIEPHLVHAHLKIRNDF 690 (862)
Q Consensus 673 ~~I~p~~~~ADivI~n~~ 690 (862)
.-+.+....||++|+|+-
T Consensus 144 ~~~~~~~~~ad~vId~~~ 161 (179)
T 3lw7_A 144 LGIGEVIAMADYIITNDS 161 (179)
T ss_dssp HTHHHHHHTCSEEEECCS
T ss_pred cChHhHHHhCCEEEECCC
Confidence 012334567899988753
No 71
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.67 E-value=1.7e-09 Score=106.52 Aligned_cols=39 Identities=18% Similarity=0.358 Sum_probs=35.0
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeeccccccc
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGV 100 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~ 100 (862)
|.+|+|+|++||||||+|+.|++.+|+.++++|.++...
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~ 40 (173)
T 1e6c_A 2 TEPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHT 40 (173)
T ss_dssp CCCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHH
Confidence 357999999999999999999999999999999986643
No 72
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.67 E-value=3.8e-09 Score=107.22 Aligned_cols=39 Identities=26% Similarity=0.442 Sum_probs=35.1
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccc
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~ 99 (862)
++.+|+|+|++||||||+++.|++.+|+.++++|++...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~ 62 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEE 62 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHH
Confidence 456899999999999999999999999999999998543
No 73
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.67 E-value=1.7e-09 Score=106.71 Aligned_cols=36 Identities=19% Similarity=0.358 Sum_probs=33.3
Q ss_pred EEEeecCCCCCCcchHHHHhhhceeeEEEeeccccc
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~ 98 (862)
.+|+|+|++||||||+++.|+..+|..++++|.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~ 40 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIE 40 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHH
Confidence 579999999999999999999999999999998755
No 74
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.63 E-value=1.5e-09 Score=111.94 Aligned_cols=38 Identities=26% Similarity=0.545 Sum_probs=35.5
Q ss_pred cEEEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002965 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
+.+|+|+||+||||||+++.|+..+|+.+++.|++|+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~ 42 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRV 42 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeeh
Confidence 46899999999999999999999999999999999984
No 75
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.63 E-value=1.3e-08 Score=103.27 Aligned_cols=147 Identities=16% Similarity=0.074 Sum_probs=79.5
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhceeeEEEeeccccccc-----CCCCCCCccchHHHHHhhhhhhcCCCccccccccc
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGV-----DEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQ 135 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~-----~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~ 135 (862)
...+|+|+|++||||||+++.|+..+|..+++.|++.... .....+...+.......+....
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------------- 94 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWM------------- 94 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHH-------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHH-------------
Confidence 4568999999999999999999998999999999975310 0000111000000000000000
Q ss_pred cccccccceeeccCceEEEEcccchhhHhhhhcc-----ceEEEEEeceeeeeeeeeecccCCccchhhHHhhhhhhhhc
Q 002965 136 QKNRIGSKVIKGASSGVVIVDGTYALDARLRSLL-----DIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRK 210 (862)
Q Consensus 136 ~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~-----D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~~~~~~p~~~k 210 (862)
.. . ......+|+++..+.......+. ...||++++.+++.+|...|..... ..+.++.++..
T Consensus 95 -~~-----~--~~~g~~viid~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~~--~~~~l~~~~~~--- 161 (200)
T 4eun_A 95 -DA-----R--ADAGVSTIITCSALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGHFM--PASLLQSQLAT--- 161 (200)
T ss_dssp -HH-----H--HHTTCCEEEEECCCCHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCCSS--CGGGHHHHHHH---
T ss_pred -HH-----H--HhcCCCEEEEchhhhHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccCCC--CHHHHHHHHHH---
Confidence 00 0 01112345555444332211122 2679999999998888877754221 12333333322
Q ss_pred ccCCCcccceeecCCccchhhHhhh
Q 002965 211 HIEPDLHHAQIRINNRFVSSFREAI 235 (862)
Q Consensus 211 ~Iep~~~~ADiII~N~~~~~~~~~~ 235 (862)
+..++...|+++|+|+. ++++-.
T Consensus 162 ~~~~~~~~~~~~Id~~~--~~~e~~ 184 (200)
T 4eun_A 162 LEALEPDESGIVLDLRQ--PPEQLI 184 (200)
T ss_dssp CCCCCTTSCEEEEETTS--CHHHHH
T ss_pred hCCCCCCCCeEEEECCC--CHHHHH
Confidence 22344556999999873 444433
No 76
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.62 E-value=1.4e-09 Score=113.65 Aligned_cols=174 Identities=14% Similarity=0.174 Sum_probs=90.5
Q ss_pred CCCcEEEeecCCCCCCcchhHhhhccceeeeEEeeccccccccc----ccCccCCCcccchhhh--cccc--------hh
Q 002965 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV----KDFKYDDFSSLDLSLL--SKNI--------SD 579 (862)
Q Consensus 514 ~~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~----~~~n~~~p~t~D~~lL--~~~L--------~~ 579 (862)
...+.+|+|+|++||||||+++.|++.+|..++++|++++.... ...+++++.+++-.+. ...+ .-
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i 92 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQLV 92 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCcccHHHHHHHHHhccccccccCCccceE
Confidence 34678999999999999999999999999999999999975211 1122222222211000 0000 00
Q ss_pred hcCCccccceeee---------ccccccc--Cc-eeeeecccceeEEEcceecccHhhhhccceeeeeecccchheehee
Q 002965 580 IRNGRRTKVPIFD---------LETGARS--GF-KELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRV 647 (862)
Q Consensus 580 L~~g~~v~~P~yd---------~~~~~r~--~~-~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri 647 (862)
+..|+.+.-..-. ...+... .. ...........+|+||.....+ +...+|++||++++.+.++.|++
T Consensus 93 ~~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~v~~g~~~~~~-~l~~~d~vi~L~a~~e~~~~R~~ 171 (236)
T 1q3t_A 93 FVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVMDGRDIGTV-VLPQAELKIFLVASVDERAERRY 171 (236)
T ss_dssp EETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCEEEECSSCSSS-SGGGCSEEEEEECCHHHHHHHHH
T ss_pred eECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHhcccCCEEEECCcchhh-hccCCCEEEEEECCHHHHHHHHH
Confidence 0122221100000 0000000 00 0000112345788899876532 33457999999999999999885
Q ss_pred ecccccccc--cccc--cceehhhhhhhhhcccccccccc-cccccC
Q 002965 648 QRDKSRMGC--FMSQ--NDIMMTVFPMFQQHIEPHLVHAH-LKIRND 689 (862)
Q Consensus 648 ~Rd~~~rg~--~~~~--~~~~~~v~p~~~~~I~p~~~~AD-ivI~n~ 689 (862)
.|.. .||. +.+. ..+.....+....++.|....+| ++|+|+
T Consensus 172 ~~~~-~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~~vId~~ 217 (236)
T 1q3t_A 172 KENI-AKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDAVYLDTT 217 (236)
T ss_dssp HHHH-HTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTCEEEECS
T ss_pred HHHH-hcCCCCCHHHHHHHHHHHhhhhhhcccccccccCCEEEEcCC
Confidence 4421 2332 2111 12222234444445566555555 677664
No 77
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.60 E-value=4.6e-09 Score=107.61 Aligned_cols=116 Identities=15% Similarity=0.012 Sum_probs=67.1
Q ss_pred EEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCccccccccccccccccc
Q 002965 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~~~~~ 143 (862)
.|+|+|++||||||+|+.|++.+|+.++++|++.+.....+.+ -...+.+.+. .+..+..............
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~---~~~~~~~~~~---~g~~~~~~~~~~~~~~~l~-- 73 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTE---LGLKAKSFMD---QGNLVPDEVTIGIVHERLS-- 73 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCH---HHHHHHHHHH---HTCCCCHHHHHHHHHHHHT--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCH---HHHHHHHHHH---CCCCCCHHHHHHHHHHHHh--
Confidence 5899999999999999999999999999999987643322211 0011111111 1111110000000111110
Q ss_pred eeeccCceEEEEcccchhh---Hhhhh-------ccceEEEEEeceeeeeeeeeec
Q 002965 144 VIKGASSGVVIVDGTYALD---ARLRS-------LLDIRVAVVGGVHFSLISKVQY 189 (862)
Q Consensus 144 ~~~~~~~~vVIvEG~~l~~---~~l~~-------~~D~~I~Vda~~~~~l~R~i~R 189 (862)
.......+|++|..... ..+.. .+|.+|++++|.+++++|...|
T Consensus 74 --~~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3fb4_A 74 --KDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGR 127 (216)
T ss_dssp --SGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSE
T ss_pred --cccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 01113357888853322 11222 3789999999999999998888
No 78
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.60 E-value=2.5e-08 Score=104.85 Aligned_cols=124 Identities=15% Similarity=-0.078 Sum_probs=74.2
Q ss_pred HhcCCeEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCcccccccccc
Q 002965 57 EKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQ 136 (862)
Q Consensus 57 ~~~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~ 136 (862)
..+.++++|+|+|++||||||+|+.|++.+|+.++++|++.+.....+.+ ....+.+.+ ..+..+....+....
T Consensus 24 ~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~---~g~~i~~~~---~~g~~~~~~~~~~~~ 97 (243)
T 3tlx_A 24 CLSKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTE---LGLKIKNII---NEGKLVDDQMVLSLV 97 (243)
T ss_dssp HHTSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSH---HHHHHHHHH---HTTCCCCHHHHHHHH
T ss_pred hccCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccch---HHHHHHHHH---hcCCCCcHHHHHHHH
Confidence 34567889999999999999999999999999999999987754332221 111111111 122211111111111
Q ss_pred ccccccceeeccCceEEEEcccchhh---Hhhh-------hccceEEEEEeceeeeeeeeeecc
Q 002965 137 KNRIGSKVIKGASSGVVIVDGTYALD---ARLR-------SLLDIRVAVVGGVHFSLISKVQYD 190 (862)
Q Consensus 137 ~~~~~~~~~~~~~~~vVIvEG~~l~~---~~l~-------~~~D~~I~Vda~~~~~l~R~i~RD 190 (862)
...... .....-+|++|..... ..+. ..+|.+|++++|.++.++|...|.
T Consensus 98 ~~~l~~----~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~ 157 (243)
T 3tlx_A 98 DEKLKT----PQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRL 157 (243)
T ss_dssp HHHTTS----GGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred HHHHhc----ccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCC
Confidence 111111 1123457888842221 1111 237999999999999999988775
No 79
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.59 E-value=1.6e-08 Score=101.34 Aligned_cols=39 Identities=28% Similarity=0.354 Sum_probs=35.1
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhc-eeeEEEeecccccc
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASV-IGCTLISMENYRVG 99 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~-Lg~~vI~~D~~~~~ 99 (862)
++.+|+|+|++||||||+++.|++. +|+.++++|++.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~ 48 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKE 48 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHH
Confidence 4567999999999999999999998 79999999998654
No 80
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.57 E-value=1.2e-08 Score=104.64 Aligned_cols=115 Identities=16% Similarity=0.114 Sum_probs=66.7
Q ss_pred EEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhh-hcCCCcccccccccccccccc
Q 002965 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDL-TEGKDTLIPMFDYQQKNRIGS 142 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l-~~~~~i~~p~~~~~~~~~~~~ 142 (862)
.|+|+|++||||||+|+.|++.+|+.++++|++.+.....+.+ +.+.+... ..+..+..............
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~~~~l~- 73 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETP-------LGLEAKSYIDKGELVPDEVTIGIVKERLG- 73 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCH-------HHHHHHHHHTTTCCCCHHHHHHHHHHHHT-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCH-------HHHHHHHHHHCCCCCCHHHHHHHHHHHHh-
Confidence 5899999999999999999999999999999987643322211 11111111 11111110000101111110
Q ss_pred ceeeccCceEEEEcccchhh---Hhhhh-------ccceEEEEEeceeeeeeeeeec
Q 002965 143 KVIKGASSGVVIVDGTYALD---ARLRS-------LLDIRVAVVGGVHFSLISKVQY 189 (862)
Q Consensus 143 ~~~~~~~~~vVIvEG~~l~~---~~l~~-------~~D~~I~Vda~~~~~l~R~i~R 189 (862)
.......+|++|.-... ..+.. .+|.+|++++|.+++++|...|
T Consensus 74 ---~~~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3dl0_A 74 ---KDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGR 127 (216)
T ss_dssp ---SGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTE
T ss_pred ---cccccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCC
Confidence 01113357888742221 11221 3789999999999999998888
No 81
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.56 E-value=4.3e-08 Score=99.16 Aligned_cols=157 Identities=12% Similarity=0.024 Sum_probs=63.3
Q ss_pred eEEEeecCCCCCCcchHHHHhhhce-eeEEEeecccccccCC--CCCCC-cc-chHHHHHhhhhhhcCCCcccccccccc
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVI-GCTLISMENYRVGVDE--GNDLD-SI-DFDALVQNLQDLTEGKDTLIPMFDYQQ 136 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L-g~~vI~~D~~~~~~~~--~~~~~-s~-d~~~l~~~L~~l~~~~~i~~p~~~~~~ 136 (862)
..+|+|+|++||||||+++.|+..+ ...-+......+.... ....+ .+ +.+.+... ...+..+.++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 82 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEAL---IKDDQFIEYAEYVGNY 82 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHH---HHTTCEEEEEEETTEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHH---HHcCCeEEEEeECCee
Confidence 3579999999999999999999866 2111111111111000 00000 01 11222111 1122223333332211
Q ss_pred ccccccce-eeccCceEEEEcccchhhHhhhhcc-ceEEEEEec--eeeeeeeeeecccCCccchhhHHhhhhhhhhccc
Q 002965 137 KNRIGSKV-IKGASSGVVIVDGTYALDARLRSLL-DIRVAVVGG--VHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHI 212 (862)
Q Consensus 137 ~~~~~~~~-~~~~~~~vVIvEG~~l~~~~l~~~~-D~~I~Vda~--~~~~l~R~i~RD~~~~~~~e~~~~~~~p~~~k~I 212 (862)
+....... ........+|+|+.+.....+...+ |..+++..+ .+...+|...|+........+.+..+.+...
T Consensus 83 ~g~~~~~i~~~l~~g~~vv~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~~~~~--- 159 (207)
T 2j41_A 83 YGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLEHLRERLVGRGTESDEKIQSRINEARKEVE--- 159 (207)
T ss_dssp EEEEHHHHHHHHHTTCEEEEECCGGGHHHHHHHCTTSEEEEEECCC---------------------------CGGG---
T ss_pred cCCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh---
Confidence 11100000 0112346899999988776676666 755555444 5577777777753322233333333333322
Q ss_pred CCCcccceeecCCc
Q 002965 213 EPDLHHAQIRINNR 226 (862)
Q Consensus 213 ep~~~~ADiII~N~ 226 (862)
....||++|+|+
T Consensus 160 --~~~~~d~vI~n~ 171 (207)
T 2j41_A 160 --MMNLYDYVVVND 171 (207)
T ss_dssp --GGGGCSEEEECS
T ss_pred --ccccCCEEEECC
Confidence 246789999887
No 82
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.56 E-value=3.4e-09 Score=106.04 Aligned_cols=125 Identities=16% Similarity=0.183 Sum_probs=72.5
Q ss_pred cEEEeecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCCCcccchhhhcccchhhcCCccccceeeecccc
Q 002965 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETG 596 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~P~yd~~~~ 596 (862)
|.+|+|.|++||||||+|+.|++.+|..++++|++.+..... +++.--..+.+.+ ..|.....+.......
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~------~~~~~~~~~~~~~---~~g~~~~~~~~~~~l~ 73 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKN------PDSQYGELIEKYI---KEGKIVPVEITISLLK 73 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHC------TTSTTHHHHHHHH---HTTCCCCHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhc------cCChHHHHHHHHH---HCCCcCCHHHHHHHHH
Confidence 688999999999999999999999999999999998642110 0010001111111 1222111000000000
Q ss_pred cccCceeeeecccceeEEEcceecccH---hhhh------ccceeeeeecccchheeheeeccc
Q 002965 597 ARSGFKELEVSEDCGVIIFEGVYALHP---EIRK------SLDLWIAVVGGVHSHLISRVQRDK 651 (862)
Q Consensus 597 ~r~~~~~~~~~~~~~vVIvEG~~~~~~---~l~~------~~D~~I~v~~~~d~rl~Rri~Rd~ 651 (862)
.... ...........+|++|...... .+.. ..|..||+++|.+.++.|...|+.
T Consensus 74 ~~~~-~~~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~ 136 (196)
T 1tev_A 74 REMD-QTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK 136 (196)
T ss_dssp HHHH-HHHHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred HHHH-hhhccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccc
Confidence 0000 0000012246889999876432 2222 467899999999999999888763
No 83
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.54 E-value=7e-09 Score=105.17 Aligned_cols=122 Identities=20% Similarity=0.140 Sum_probs=68.5
Q ss_pred cCCeEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCcccccccccccc
Q 002965 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (862)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~ 138 (862)
...+++|+|+|++||||||+|+.|++.+|+.++++|++.+.....+.+ ....+.+.+. .+..+...........
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~---~g~~i~~~~~---~g~~~~~~~~~~~~~~ 90 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTK---LGVEAKRYLD---AGDLVPSDLTNELVDD 90 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCH---HHHHHHHHHH---HTCCCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCCh---HHHHHHHHHH---cCCcccHHHHHHHHHH
Confidence 345678999999999999999999999999999999986532111111 0011111111 1111000000000011
Q ss_pred ccccceeeccCceEEEEcccch-hh------Hhhh---hccceEEEEEeceeeeeeeeeecc
Q 002965 139 RIGSKVIKGASSGVVIVDGTYA-LD------ARLR---SLLDIRVAVVGGVHFSLISKVQYD 190 (862)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l-~~------~~l~---~~~D~~I~Vda~~~~~l~R~i~RD 190 (862)
+... ......+|++|... .. ..+. ..+|.+||+++|.+++++|...|.
T Consensus 91 ~~~~----~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~ 148 (201)
T 2cdn_A 91 RLNN----PDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG 148 (201)
T ss_dssp HTTS----GGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC
T ss_pred HHhc----ccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 1100 01123478887432 11 1121 236899999999999988887774
No 84
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.53 E-value=1.2e-08 Score=103.48 Aligned_cols=141 Identities=13% Similarity=0.111 Sum_probs=78.5
Q ss_pred CcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCCCcccchhhhcccchhhcCCccccceeeeccc
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET 595 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~P~yd~~~ 595 (862)
.+.+|+|+|++||||||+|+.|++.+|..+++.|+++..........+. .+........+..+.+
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g~--~~~~~~~~~~~~~l~~------------- 81 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGI--PLTDDDRWPWLAAIGE------------- 81 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHTC--CCCHHHHHHHHHHHHH-------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcCC--CCCchhhHHHHHHHHH-------------
Confidence 3678999999999999999999999999999999997542111000000 0000001111111110
Q ss_pred ccccCceeeeecccceeEEEcceeccc---Hhhhhcc---ceeeeeecccchheeheeecccccccccccccceehhhhh
Q 002965 596 GARSGFKELEVSEDCGVIIFEGVYALH---PEIRKSL---DLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFP 669 (862)
Q Consensus 596 ~~r~~~~~~~~~~~~~vVIvEG~~~~~---~~l~~~~---D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~~~v~p 669 (862)
. ......+|+++.+... ..+.... +..||++++.++++.|...|+..... ...+..
T Consensus 82 -------~---~~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~--------~~~~~~ 143 (202)
T 3t61_A 82 -------R---LASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFMP--------SSLLQT 143 (202)
T ss_dssp -------H---HTSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCCC--------HHHHHH
T ss_pred -------H---HhcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCCC--------HHHHHH
Confidence 0 0112455666665432 2233333 47899999999999888777532111 011122
Q ss_pred hhhhcccccccccccccccC
Q 002965 670 MFQQHIEPHLVHAHLKIRND 689 (862)
Q Consensus 670 ~~~~~I~p~~~~ADivI~n~ 689 (862)
.+..+-.+....++++|+++
T Consensus 144 ~~~~~~~~~~~~~~~~Id~~ 163 (202)
T 3t61_A 144 QLETLEDPRGEVRTVAVDVA 163 (202)
T ss_dssp HHHHCCCCTTSTTEEEEESS
T ss_pred HHHhcCCCCCCCCeEEEeCC
Confidence 23333233445577777775
No 85
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.52 E-value=1.4e-08 Score=107.20 Aligned_cols=39 Identities=21% Similarity=0.538 Sum_probs=35.3
Q ss_pred CcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
...+|+|+||+||||||+++.|++.||...++.|.+|+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~ 64 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRV 64 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehH
Confidence 446899999999999999999999999999999999843
No 86
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.52 E-value=6.2e-09 Score=105.54 Aligned_cols=118 Identities=12% Similarity=0.108 Sum_probs=70.1
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCC-CCCCCccchHHHHHhhhhhhcCCCc----ccccccc
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDE-GNDLDSIDFDALVQNLQDLTEGKDT----LIPMFDY 134 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~-~~~~~s~d~~~l~~~L~~l~~~~~i----~~p~~~~ 134 (862)
.++.+|+|+|++||||||+|+.|++.+|+.++++|++++.... .+.+ .-+.+.+.+. .|... .++.+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~---~~~~i~~~~~---~g~~~~~~~~~~~l~~ 86 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQ---YGELIKNCIK---EGQIVPQEITLALLRN 86 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCS---CHHHHHHHHH---TTCCCCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCH---HHHHHHHHHH---cCCcCCHHHHHHHHHH
Confidence 4578999999999999999999999999999999998664321 1111 0111222221 12111 1111111
Q ss_pred ccccccccceeeccCceEEEEcccch-------hhHhhhhccceEEEEEeceeeeeeeeeecc
Q 002965 135 QQKNRIGSKVIKGASSGVVIVDGTYA-------LDARLRSLLDIRVAVVGGVHFSLISKVQYD 190 (862)
Q Consensus 135 ~~~~~~~~~~~~~~~~~vVIvEG~~l-------~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD 190 (862)
... . .. ....+.+|++|... ++..+ ..+|++|||++|.+++++|...|+
T Consensus 87 ~i~----~-~l-~~g~~~~i~dg~~~~~~~~~~~~~~~-~~~~~~i~l~~~~e~~~~Rl~~R~ 142 (203)
T 1ukz_A 87 AIS----D-NV-KANKHKFLIDGFPRKMDQAISFERDI-VESKFILFFDCPEDIMLERLLERG 142 (203)
T ss_dssp HHH----H-HH-HTTCCEEEEETCCCSHHHHHHHHHHT-CCCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHH----h-hh-ccCCCeEEEeCCCCCHHHHHHHHHhc-CCCCEEEEEECCHHHHHHHHHhcc
Confidence 000 0 00 11124577887532 11122 237999999999999999988875
No 87
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.52 E-value=1.2e-08 Score=101.02 Aligned_cols=38 Identities=24% Similarity=0.238 Sum_probs=34.1
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccc
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~ 99 (862)
|.+|.|+|++||||||+|+.|++.+|+.++++|++++.
T Consensus 4 m~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~ 41 (175)
T 1via_A 4 AKNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQ 41 (175)
T ss_dssp -CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHH
Confidence 34699999999999999999999999999999998653
No 88
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.50 E-value=6e-09 Score=108.95 Aligned_cols=39 Identities=23% Similarity=0.576 Sum_probs=36.3
Q ss_pred CcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
.|.+|+|.||+||||||+++.|++.+|..+++.|++|+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~ 46 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRI 46 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHH
Confidence 578999999999999999999999999999999999986
No 89
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.46 E-value=2e-08 Score=102.68 Aligned_cols=163 Identities=15% Similarity=0.031 Sum_probs=77.0
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHh----hhhhhcCCCccccccccccc
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQN----LQDLTEGKDTLIPMFDYQQK 137 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~----L~~l~~~~~i~~p~~~~~~~ 137 (862)
.++|+|+|++||||||+++.||+.||+.++| +++++..........-+++.+.+. +..+..+ .+..........
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~g~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~ 83 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDGRYSKEVLERFDEKPMNFAFIPVPA-GGTTISLEQDIA 83 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC----------------------------------CHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhcCCCHHHHHHHhhhchhHHHHHhcc-ccccccccHHHH
Confidence 3589999999999999999999999999999 666543322211111111111111 1000000 000000000000
Q ss_pred cccccceeecc--CceEEEEcccchhhHhhhhc-cceEEEEEeceeeeeeeeeecccCCccchhhHHh----hhhhhhhc
Q 002965 138 NRIGSKVIKGA--SSGVVIVDGTYALDARLRSL-LDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLID----SIFPLFRK 210 (862)
Q Consensus 138 ~~~~~~~~~~~--~~~vVIvEG~~l~~~~l~~~-~D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~~~----~~~p~~~k 210 (862)
........... ...-+|++|..... -+.+. ..++|||++|.+.+.+|+..+.........+.+. ...+.|+.
T Consensus 84 ~~~~~~i~~la~~~~~~~Vi~Gr~g~~-vl~~~~~~~~V~L~A~~e~r~~R~~~~~~~~~~~~~~~i~~~d~~R~~~y~~ 162 (201)
T 3fdi_A 84 IRQFNFIRKKANEEKESFVIVGRCAEE-ILSDNPNMISAFILGDKDTKTKRVMEREGVDEKTALNMMKKMDKMRKVYHNF 162 (201)
T ss_dssp HHHHHHHHHHHHTSCCCEEEESTTHHH-HTTTCTTEEEEEEEECHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCEEEEECCcch-hcCCCCCeEEEEEECCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000111 12234555443221 12222 3689999999999999988775433222222221 22344443
Q ss_pred c--cCC-CcccceeecCCcc
Q 002965 211 H--IEP-DLHHAQIRINNRF 227 (862)
Q Consensus 211 ~--Iep-~~~~ADiII~N~~ 227 (862)
+ +.| ....+|++|+++.
T Consensus 163 ~~~~~~~~~~~~dl~Idt~~ 182 (201)
T 3fdi_A 163 YCESKWGDSRTYDICIKIGK 182 (201)
T ss_dssp HCSSCTTBGGGCSEEEEESS
T ss_pred HhCCCCCCcccCCEEEECCC
Confidence 2 222 3456889998873
No 90
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.46 E-value=3.3e-08 Score=99.13 Aligned_cols=122 Identities=15% Similarity=0.091 Sum_probs=71.7
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCccccccccccccc
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR 139 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~ 139 (862)
.++.+|+|+|++||||||+|+.|++.+|..++++|++++.....+.+ ....+.+.+. .|..+............
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~---~~~~i~~~~~---~g~~~~~~~~~~~~~~~ 80 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSA---RGKKLSEIME---KGQLVPLETVLDMLRDA 80 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCH---HHHHHHHHHH---TTCCCCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCCh---HHHHHHHHHH---cCCcCCHHHHHHHHHHH
Confidence 45678999999999999999999999999999999986643211111 1111222221 22221110000000010
Q ss_pred cccceeeccCceEEEEcccch-hh--Hh---hhhccceEEEEEeceeeeeeeeeecc
Q 002965 140 IGSKVIKGASSGVVIVDGTYA-LD--AR---LRSLLDIRVAVVGGVHFSLISKVQYD 190 (862)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~l-~~--~~---l~~~~D~~I~Vda~~~~~l~R~i~RD 190 (862)
+.. .......+|+||... .. .. .....|.+||+++|.+.+.+|...|.
T Consensus 81 i~~---~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 134 (196)
T 2c95_A 81 MVA---KVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRG 134 (196)
T ss_dssp HHH---HTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHh---ccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccC
Confidence 000 011345789998422 21 11 12457899999999999998887775
No 91
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.45 E-value=2.6e-08 Score=99.40 Aligned_cols=121 Identities=17% Similarity=0.190 Sum_probs=70.0
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCCCcccchhhhcccchhhcCCccccceeeecc
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLE 594 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~P~yd~~ 594 (862)
..+.+|+|+|++||||||+|+.|++.+|..++++|++....... ++-....+.+.+ ..|... | +..
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~-------~~~~~~~i~~~~---~~g~~~--~--~~~ 69 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQS-------GSKDGEMIATMI---KNGEIV--P--SIV 69 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHT-------TCTTHHHHHHHH---HTTCCC--C--HHH
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhc-------CCHHHHHHHHHH---HCCCCC--C--HHH
Confidence 34679999999999999999999999999999999987642110 000000111111 111100 0 000
Q ss_pred cccccCceeeeecccceeEEEcceecccH---hh----hh--ccceeeeeecccchheeheeeccc
Q 002965 595 TGARSGFKELEVSEDCGVIIFEGVYALHP---EI----RK--SLDLWIAVVGGVHSHLISRVQRDK 651 (862)
Q Consensus 595 ~~~r~~~~~~~~~~~~~vVIvEG~~~~~~---~l----~~--~~D~~I~v~~~~d~rl~Rri~Rd~ 651 (862)
...... .... ......+|++|...... .+ .. ..|..||+++|.+.++.|...|+.
T Consensus 70 ~~~~l~-~~i~-~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~ 133 (194)
T 1qf9_A 70 TVKLLK-NAID-ANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGE 133 (194)
T ss_dssp HHHHHH-HHHH-TSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHT
T ss_pred HHHHHH-HHHH-hcCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccc
Confidence 000000 0000 01346789998543321 12 22 578999999999999999887753
No 92
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.44 E-value=1.4e-07 Score=100.05 Aligned_cols=136 Identities=16% Similarity=0.151 Sum_probs=79.3
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhc---eeeEEE--eecccccccCCCCCCCccchHHHHHhhhhhhcCCCccccccccc
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASV---IGCTLI--SMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQ 135 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~---Lg~~vI--~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~ 135 (862)
+|.+|.|+|++||||||+|+.|++. +|..++ +.|.+...+..+. + .....+......
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~~~-~--~~e~~~~~~~~~--------------- 64 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWK-E--KYEEFIKKSTYR--------------- 64 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSSCC-G--GGHHHHHHHHHH---------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhhhh-H--HHHHHHHHHHHH---------------
Confidence 4678999999999999999999987 576665 8888765443311 0 000111111000
Q ss_pred cccccccceeeccCceEEEEcccchhhH---hhhhc------cceEEEEEeceeeeeeeeeecccCCccchhhHHhhhhh
Q 002965 136 QKNRIGSKVIKGASSGVVIVDGTYALDA---RLRSL------LDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFP 206 (862)
Q Consensus 136 ~~~~~~~~~~~~~~~~vVIvEG~~l~~~---~l~~~------~D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~~~~~~p 206 (862)
.+.. . ... ..||++|...... .+... .+.+||+++|.+.+.+|...|.. ....+.++.+
T Consensus 65 ---~i~~-~--l~~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~---~~~~~~l~~~-- 132 (260)
T 3a4m_A 65 ---LIDS-A--LKN-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGE---KIPNEVIKKM-- 132 (260)
T ss_dssp ---HHHH-H--HTT-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTC---SSCHHHHHHH--
T ss_pred ---HHHH-H--hhC-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCC---CCCHHHHHHH--
Confidence 0000 0 112 4788888765442 22222 37899999999999888877642 1122334333
Q ss_pred hhhcccCCCc----ccceeecCCcc
Q 002965 207 LFRKHIEPDL----HHAQIRINNRF 227 (862)
Q Consensus 207 ~~~k~Iep~~----~~ADiII~N~~ 227 (862)
+..|-+|.. ..++++|+++.
T Consensus 133 -~~~~e~~~~~~~~~~~~~~Id~~~ 156 (260)
T 3a4m_A 133 -YEKFDEPGKKYKWDEPFLIIDTTK 156 (260)
T ss_dssp -HHHCCCTTSSCGGGCCSEEEETTS
T ss_pred -HHHhcCccccCCCCCCEEEEeCCC
Confidence 222333332 35789998875
No 93
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.42 E-value=1.8e-08 Score=98.81 Aligned_cols=37 Identities=16% Similarity=0.272 Sum_probs=34.0
Q ss_pred EEEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
.+|+|+|++||||||+++.|++.++..+++.|.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~ 38 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELA 38 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccc
Confidence 3789999999999999999999999999999988764
No 94
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.39 E-value=1.3e-07 Score=95.54 Aligned_cols=157 Identities=13% Similarity=0.084 Sum_probs=76.9
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCC--CCCC--CccchHHHHHhhhhhhcCCCccccccccccc
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDE--GNDL--DSIDFDALVQNLQDLTEGKDTLIPMFDYQQK 137 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~--~~~~--~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~ 137 (862)
..+|||+||+||||||+++.|+..+....++.....+.... .... -..+...+..... .+.-.....+....+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 83 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVK---EGAFLEHATIYERHY 83 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHH---HTCEEEEEEETTEEE
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHh---cCcEEeeeeeecccc
Confidence 35799999999999999999998765333333332221110 0000 0111122221111 010011111100000
Q ss_pred ccc-ccceeeccCceEEEEcccchhhHhhhhccc--eEEEEEec-eeeeeeeeeecccCCccchhhHHhhhhhhhhcccC
Q 002965 138 NRI-GSKVIKGASSGVVIVDGTYALDARLRSLLD--IRVAVVGG-VHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIE 213 (862)
Q Consensus 138 ~~~-~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D--~~I~Vda~-~~~~l~R~i~RD~~~~~~~e~~~~~~~p~~~k~Ie 213 (862)
... ............+++++.......+...++ ..||+..+ .+...+|...|+........+.+..+.+....
T Consensus 84 ~~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~--- 160 (205)
T 3tr0_A 84 GTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALAREEMAH--- 160 (205)
T ss_dssp EEEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHHHHTT---
T ss_pred cchHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhc---
Confidence 000 000001123457888875443334444444 45666664 66777777777654444555556655555433
Q ss_pred CCcccceeecCCc
Q 002965 214 PDLHHAQIRINNR 226 (862)
Q Consensus 214 p~~~~ADiII~N~ 226 (862)
...||+||.|+
T Consensus 161 --~~~~d~vi~n~ 171 (205)
T 3tr0_A 161 --YKEFDYLVVND 171 (205)
T ss_dssp --GGGCSEEEECS
T ss_pred --ccCCCEEEECC
Confidence 47899999988
No 95
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.38 E-value=8.4e-08 Score=94.62 Aligned_cols=112 Identities=15% Similarity=0.027 Sum_probs=67.3
Q ss_pred eEEEeecCCCCCCcchHHHHhhh-ceeeEEEeecccccccCCC-CC-CCccchH---HHHHhhhhhhcCCCccccccccc
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLAS-VIGCTLISMENYRVGVDEG-ND-LDSIDFD---ALVQNLQDLTEGKDTLIPMFDYQ 135 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~-~Lg~~vI~~D~~~~~~~~~-~~-~~s~d~~---~l~~~L~~l~~~~~i~~p~~~~~ 135 (862)
+.+|.|+|++||||||+|+.|++ .+|+.++++|.+....... .. ...++.+ .+.+.+....
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 68 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTA------------- 68 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHH-------------
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHHhhCCCccchhhhchhhhhHHHHHHHHHH-------------
Confidence 46899999999999999999998 7899999999886543221 10 0112211 1111111100
Q ss_pred cccccccceeeccCceEEEEcccchhh---Hhhhhc------cceEEEEEeceeeeeeeeeeccc
Q 002965 136 QKNRIGSKVIKGASSGVVIVDGTYALD---ARLRSL------LDIRVAVVGGVHFSLISKVQYDI 191 (862)
Q Consensus 136 ~~~~~~~~~~~~~~~~vVIvEG~~l~~---~~l~~~------~D~~I~Vda~~~~~l~R~i~RD~ 191 (862)
..... .......||++|..... ..+... -...||++++.+++++|...|..
T Consensus 69 -~~~l~----~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~ 128 (181)
T 1ly1_A 69 -KSILY----GGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT 128 (181)
T ss_dssp -HHHHT----SCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGG
T ss_pred -HHHHh----hccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhcccc
Confidence 00000 00234578999876532 222221 23689999999999888887753
No 96
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.37 E-value=1.2e-08 Score=104.60 Aligned_cols=38 Identities=18% Similarity=0.497 Sum_probs=35.6
Q ss_pred cEEEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002965 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
|.+|+|+|++||||||+++.|++.+|..++++|++++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~ 40 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRA 40 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHH
Confidence 56899999999999999999999999999999999874
No 97
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.37 E-value=5.2e-08 Score=95.39 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=33.5
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002965 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
+|+|+|++||||||+|+.|++.++..++++|++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~ 37 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQK 37 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHH
Confidence 689999999999999999999999999999999764
No 98
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.37 E-value=5.9e-08 Score=97.01 Aligned_cols=39 Identities=23% Similarity=0.375 Sum_probs=35.1
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceeeEEEeeccccc
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~ 98 (862)
+.+.+|.|+|++||||||+++.|++.+|+.+++.|.+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~ 41 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKE 41 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHH
Confidence 346789999999999999999999999999999999854
No 99
>2dc4_A PH1012 protein, 165AA long hypothetical protein; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.65A {Pyrococcus horikoshii}
Probab=98.37 E-value=5.9e-07 Score=88.70 Aligned_cols=111 Identities=17% Similarity=0.285 Sum_probs=93.1
Q ss_pred CeEEEEE--ecceeeEEeeccccCCCeeeccccceeee-hhhhh-hhhhccceEEEEEEeeeeeeecCeEEEEeeccCCC
Q 002965 750 DCIRVRI--CEGRFALLIREPLREGNFIIQPKVDFDIS-ISTVA-GLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDA 825 (862)
Q Consensus 750 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~f~~~-~~~~~-~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (862)
.++|||. .++++.|.+..|. +|....++..+++|. ...+. -|-+|||+....++.+...|.-+++.|.+|..+++
T Consensus 42 ~~LRiR~~~~~~~~~lT~K~~~-~g~~~~~~E~e~~i~~~~~~~~~L~~lg~~~~~~~~k~R~~~~~~~~~i~lD~~~~~ 120 (165)
T 2dc4_A 42 KLLRVRKINNTGKSYITYKEIL-DKRNEEFYELEFEVQDPEGAIELFKRLGFKVQGVVKKRRWIYKLNNVTFELNRVEKA 120 (165)
T ss_dssp EEEEEEEETTTTEEEEEEEEEC-SSSSCEEEEEEEEBSCHHHHHHHHHHTTCCEEEEEEEEEEEEEETTEEEEEEEETTT
T ss_pred CEEEEEEEcCCCEEEEEEeCcC-CCCceeeeEEEEEcCCHHHHHHHHHHcCCcEEEEEEEEEEEEEECCEEEEEEecCCC
Confidence 7999995 4899999999998 888888887777773 33333 33467999998888888888889999999999999
Q ss_pred CCCceEEeccC------HHHHhhccceeeecCc-ccceehhccC
Q 002965 826 PSPYLQIKGVD------KEAVAAAGSTLKLDGS-YTTKVMSLAL 862 (862)
Q Consensus 826 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~ 862 (862)
+ .|+.|-..+ ++.+.+++.+|||+.. .+++||+|+|
T Consensus 121 g-~~~EiE~~~~~~~~~~~~~~~l~~~lgi~~~~~~~~sY~ell 163 (165)
T 2dc4_A 121 G-DFLDIEVITSNPEEGKKIIWDVARRLGLKEEDVEPKLYIELI 163 (165)
T ss_dssp E-EEEEEEECCSCHHHHHHHHHHHHHHTTCCGGGBCCSCHHHHC
T ss_pred c-cEEEEEEEcCCHHHHHHHHHHHHHHcCCCcccceehhHHHHh
Confidence 8 898887665 7889999999999887 8999999986
No 100
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.36 E-value=1.5e-07 Score=98.92 Aligned_cols=124 Identities=11% Similarity=-0.055 Sum_probs=71.9
Q ss_pred hcCCCcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCCCcccchhhhcccchhhcCCccccceee
Q 002965 512 ENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIF 591 (862)
Q Consensus 512 ~~~~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~P~y 591 (862)
....+|.+|+|+||+||||||+|+.|++.+|..++|+|+..+..... ++-.-..+. ..+.+|..+....+
T Consensus 24 ~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~-------~~~~g~~i~---~~~~~g~~~~~~~~ 93 (243)
T 3tlx_A 24 CLSKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEK-------KTELGLKIK---NIINEGKLVDDQMV 93 (243)
T ss_dssp HHTSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTS-------SSHHHHHHH---HHHHTTCCCCHHHH
T ss_pred hccCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhc-------cchHHHHHH---HHHhcCCCCcHHHH
Confidence 34567899999999999999999999999999999999998752111 010000111 11112221111000
Q ss_pred ecccccccCceeeeecccceeEEEcceecccH---hhh-------hccceeeeeecccchheeheeecc
Q 002965 592 DLETGARSGFKELEVSEDCGVIIFEGVYALHP---EIR-------KSLDLWIAVVGGVHSHLISRVQRD 650 (862)
Q Consensus 592 d~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~~---~l~-------~~~D~~I~v~~~~d~rl~Rri~Rd 650 (862)
......+. .......-+|++|...... .+. ...|..|++++|.++.+.|...|.
T Consensus 94 ~~~~~~~l-----~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~ 157 (243)
T 3tlx_A 94 LSLVDEKL-----KTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRL 157 (243)
T ss_dssp HHHHHHHT-----TSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred HHHHHHHH-----hcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCC
Confidence 00001111 0011134578888433221 121 236899999999999988887774
No 101
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.36 E-value=1.1e-07 Score=100.37 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=35.3
Q ss_pred EEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccC
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD 101 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~ 101 (862)
.+|+|+|++||||||+++.|++.+|..++++|.++....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~ 87 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAM 87 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHh
Confidence 469999999999999999999999999999999876544
No 102
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.35 E-value=2.8e-08 Score=99.94 Aligned_cols=121 Identities=16% Similarity=0.106 Sum_probs=71.4
Q ss_pred CcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCCCcccchhhhcccchhhcCCccccceeeeccc
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET 595 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~P~yd~~~ 595 (862)
.+.+|+|+|++||||||+|+.|++.++..++++|+++....... .+ ....+.+.+ ..|..+.. ...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~----~~---~~~~i~~~~---~~g~~~~~----~~~ 76 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASE----SE---RSKLIRDIM---ERGDLVPS----GIV 76 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHT----CH---HHHHHHHHH---HTTCCCCH----HHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhC----CH---HHHHHHHHH---HcCCcCCH----HHH
Confidence 35789999999999999999999999999999999987522100 00 000011111 11211100 000
Q ss_pred ccccCceee-eecccceeEEEcceeccc---Hhhhh---ccceeeeeecccchheeheeeccc
Q 002965 596 GARSGFKEL-EVSEDCGVIIFEGVYALH---PEIRK---SLDLWIAVVGGVHSHLISRVQRDK 651 (862)
Q Consensus 596 ~~r~~~~~~-~~~~~~~vVIvEG~~~~~---~~l~~---~~D~~I~v~~~~d~rl~Rri~Rd~ 651 (862)
..... ..+ ........+|+||..... ..+.. ..|..||+++|.+.++.|...|+.
T Consensus 77 ~~~~~-~~i~~~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~ 138 (199)
T 2bwj_A 77 LELLK-EAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSR 138 (199)
T ss_dssp HHHHH-HHHHHHTTSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCC
T ss_pred HHHHH-HHHhcccccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCC
Confidence 00000 000 001234689999976542 12333 468999999999999888877753
No 103
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.35 E-value=8.6e-08 Score=96.15 Aligned_cols=32 Identities=28% Similarity=0.408 Sum_probs=28.3
Q ss_pred EEeecCCCCCCcchHHHHhhhce---eeEEEeecc
Q 002965 64 TVGIGGPSGSGKTSLAEKLASVI---GCTLISMEN 95 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~L---g~~vI~~D~ 95 (862)
+|+|+|++||||||+++.|++.+ |+.++.++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 69999999999999999999988 888887754
No 104
>3ghx_A Adenylate cyclase CYAB; CYTH domain, antiparallel barrel, product complex, cyclic AMP, lyase; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0y_A* 3n0z_A* 3n10_A* 2fjt_A
Probab=98.33 E-value=6.6e-07 Score=89.75 Aligned_cols=109 Identities=23% Similarity=0.226 Sum_probs=87.3
Q ss_pred CCCCeEEEEEec--ceeeEEeeccccCCCeeeccccceeee--hhhhhhhhhccceEEEEEEeeeeeeecCeEEEEeecc
Q 002965 747 TESDCIRVRICE--GRFALLIREPLREGNFIIQPKVDFDIS--ISTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHL 822 (862)
Q Consensus 747 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~f~~~--~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (862)
..+.|||+|..+ |++.+.+..|..++-. +++|. -.+..-|.+|||+.++.++....+|..+++.|++|++
T Consensus 55 ~~~~~lRiR~~~~~~~~~~t~Kgp~~~~~~------e~~v~d~~~~~~iL~~LG~~~~~~v~K~R~~y~~~~~~i~LD~v 128 (179)
T 3ghx_A 55 KQQISMVLREMNPSGIRLWIVKGPGAERCE------ASNIEDVSKVQSMLATLGYHPAFTIEKQRSIYFVGKFHITVDHL 128 (179)
T ss_dssp GGTCEEEEEEEETTCCEEEEEECSSSSBEE------EEECSCHHHHHHHHHHTTCEEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred HCCcEEEEEEecCCCcEEEEEecCCCCcEE------EEEcCCHHHHHHHHHHCCCcEEEEEEEEEEEEEECCEEEEEEcc
Confidence 456799999985 7888888888876532 33333 1233345599999999999999999999999999999
Q ss_pred CCCCCCceEEecc---------CHHHHhhccceeeecC-cccceehhccC
Q 002965 823 QDAPSPYLQIKGV---------DKEAVAAAGSTLKLDG-SYTTKVMSLAL 862 (862)
Q Consensus 823 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 862 (862)
++|+ .|+.|-.. .++.+.+++.+|||+. .-+++||+|+|
T Consensus 129 ~glG-~f~EIE~~~~d~~~~~~~~~~i~~l~~~LGi~~~~~~~~sY~eLl 177 (179)
T 3ghx_A 129 TGLG-DFAEIAIMTDDATELDKLKAECRDFANTFGLQVDQQEPRSYRQLL 177 (179)
T ss_dssp TTTE-EEEEEEEEESCGGGHHHHHHHHHHHHHHHTCCGGGBCCSCHHHHH
T ss_pred CCCc-cEEEEEEEcCChhhHHHHHHHHHHHHHHcCcChhhceehhHHHHh
Confidence 9999 69999753 2467888999999987 58899999985
No 105
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.33 E-value=4.1e-08 Score=97.80 Aligned_cols=115 Identities=22% Similarity=0.078 Sum_probs=66.5
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCcccccccccccccc
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI 140 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~~ 140 (862)
+..+|+|+|++||||||+|+.|++.+|+.++++|++.+.....+.+ ....+.+.+. .+... + +.......
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~---~~~~i~~~~~---~g~~~--~--~~~~~~~~ 72 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTP---LGERVRPIME---RGDLV--P--DDLILELI 72 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCH---HHHHHHHHHH---TTCCC--C--HHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCCh---HHHHHHHHHH---cCCcC--C--HHHHHHHH
Confidence 4568999999999999999999999999999999876532111111 0011112211 12110 0 00011111
Q ss_pred ccceeeccCceEEEEcccchhhH-------hhhh---ccceEEEEEeceeeeeeeeeecc
Q 002965 141 GSKVIKGASSGVVIVDGTYALDA-------RLRS---LLDIRVAVVGGVHFSLISKVQYD 190 (862)
Q Consensus 141 ~~~~~~~~~~~vVIvEG~~l~~~-------~l~~---~~D~~I~Vda~~~~~l~R~i~RD 190 (862)
.. .. .. . +|++|...... .+.. .+|.+||+++|.+.+.+|...|.
T Consensus 73 ~~-~l--~~-~-~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 127 (186)
T 3cm0_A 73 RE-EL--AE-R-VIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRA 127 (186)
T ss_dssp HH-HC--CS-E-EEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHH
T ss_pred HH-Hh--cC-C-EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 10 00 11 1 77887543211 1111 36899999999999988887774
No 106
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.31 E-value=2.3e-08 Score=108.28 Aligned_cols=175 Identities=17% Similarity=0.117 Sum_probs=86.0
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeeccc--ccccCCCCC-CCccchHHHHHhhhhhhcCCCcccccccccccc
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDEGND-LDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~~~~~-~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~ 138 (862)
+.+|+|+||+||||||||..|++.++..+|++|.+ |+++.-... |...+......+|-+...-.+ .+..-++....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e-~~s~~~F~~~a 81 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSE-SFSVADFQDLA 81 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTS-CCCHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhh-hccHHHHHHHH
Confidence 46899999999999999999999999999999997 887765432 222222212222222111111 00111111111
Q ss_pred ccccceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecccCCccchhhHHhhhhhhhhcccCCCccc
Q 002965 139 RIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHH 218 (862)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~~~~~~p~~~k~Iep~~~~ 218 (862)
......+......++++.|..+|-..+..-.++. ..+.+..++..+... ...... ...+.+.-+-+...
T Consensus 82 ~~~i~~i~~~gk~pIlVGGTglYi~aLl~g~~~~---~~~~~~~~R~~l~~~-~~~~g~-------~~L~~~L~~~DP~~ 150 (322)
T 3exa_A 82 TPLITEIHERGRLPFLVGGTGLYVNAVIHQFNLG---DIRADEDYRHELEAF-VNSYGV-------QALHDKLSKIDPKA 150 (322)
T ss_dssp HHHHHHHHHTTCEEEEESCCHHHHHHHHHTCCCC---CCBCCHHHHHHHHHH-HHHSCH-------HHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCCcEEEEcCcHHHHHHHHcCCcCC---CCCCCHHHHHHHHHH-HHhcCH-------HHHHHHHHhhCHHH
Confidence 1111111223445789999999876665433321 111111111111110 000001 11222222333445
Q ss_pred ceeecCCccchhhHhhhhhhccccC-CCCccccccccC
Q 002965 219 AQIRINNRFVSSFREAIYKLKCRSE-APGACSISAFQG 255 (862)
Q Consensus 219 ADiII~N~~~~~~~~~~y~lk~~~~-~l~g~~~~~~~~ 255 (862)
|.-|-.|| +..++++++. ..+|.+.+.+..
T Consensus 151 A~~i~pnd-------~~Ri~RALEV~~~TG~~~S~~~~ 181 (322)
T 3exa_A 151 AAAIHPNN-------YRRVIRALEIIKLTGKTVTEQAR 181 (322)
T ss_dssp HTTSCTTC-------HHHHHHHHHHHHHTC--------
T ss_pred HhhcCccc-------HHHHHHHHHHHHHHCCCHHHHhh
Confidence 66677788 8889999887 677877666543
No 107
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.31 E-value=1.2e-07 Score=95.98 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=36.8
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
+.+.+|+|+|++||||||+|+.|++.+|..++++|++++.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~ 52 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRA 52 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHH
Confidence 4678999999999999999999999999999999998764
No 108
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.29 E-value=9e-08 Score=95.62 Aligned_cols=32 Identities=31% Similarity=0.432 Sum_probs=29.8
Q ss_pred EEeecCCCCCCcchHHHHhhhce---eeEEEeecc
Q 002965 64 TVGIGGPSGSGKTSLAEKLASVI---GCTLISMEN 95 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~L---g~~vI~~D~ 95 (862)
+|+|+|++||||||+|+.|++.+ |+.++++|.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 69999999999999999999988 899999974
No 109
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.29 E-value=5.5e-08 Score=96.92 Aligned_cols=36 Identities=19% Similarity=0.414 Sum_probs=33.6
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002965 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
+|+|+|++||||||+|+.|++.+|+.++++|+++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~ 39 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQ 39 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHH
Confidence 589999999999999999999999999999999764
No 110
>2een_A Hypothetical protein PH1819; dimer, NPPSFA, national project on Pro structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=98.28 E-value=4e-07 Score=91.52 Aligned_cols=114 Identities=14% Similarity=0.227 Sum_probs=91.5
Q ss_pred CCCCeEEEE----EecceeeEEeeccccCCCeeeccccceeee--hh-hhhhhhhccceEEEEEEeeeeeeecC-eEEEE
Q 002965 747 TESDCIRVR----ICEGRFALLIREPLREGNFIIQPKVDFDIS--IS-TVAGLLNLGYQAVAYIEASAFIYQDG-KILIE 818 (862)
Q Consensus 747 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~f~~~--~~-~~~~l~~lg~~~~~~~~~~~~~~~~~-~~~~~ 818 (862)
..+.+||+| ..++++.+.+..|..++....++..++.|. .. +...|.+|||+.+..++.....|.-+ .+.|.
T Consensus 44 ~~~~~LRiR~~~~~~~~~~~lT~K~p~~~~~~~~r~E~e~~v~~~~~~~~~~L~~lgl~~~~~~~k~R~~~~~~~~~~v~ 123 (183)
T 2een_A 44 KTDEALRIRIKRFNGHNEVFLTYKGPKIDEKSKTRLEIEVEIQEDVDKYFELLDRLGFKEVLKVVKTREKYYVEKGVTIT 123 (183)
T ss_dssp HHTCEEEEEEEEETTEEEEEEEEEEEECCTTSCCEEEEEEEECSCHHHHHHHHHHTTCEEEEEEEEEEEEEEEETTEEEE
T ss_pred hCCeEEEEeeeecCCCCEEEEEECCCcCCCCceeEEEEEEeecCCHHHHHHHHHHCCCeEEEEEEEEEEEEEeCCCEEEE
Confidence 345699999 567999999999988888777776666664 22 33445559999999888888777777 89999
Q ss_pred eeccCCCCCCceEEecc---------CHHHHhhccceeeecCcccceehhccC
Q 002965 819 VDHLQDAPSPYLQIKGV---------DKEAVAAAGSTLKLDGSYTTKVMSLAL 862 (862)
Q Consensus 819 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (862)
+|+++.++. |+.|-.. .++.+.+.+.+||| +..+++||+|+|
T Consensus 124 lD~~~~lg~-f~EiE~e~~~~~~~~~~~~~~~~l~~~lgi-~~~~~~sY~ell 174 (183)
T 2een_A 124 LDEVEGLGK-FIEIETLVKEKDEIPEAVEKLEKILRELGV-EKFERRSYLELL 174 (183)
T ss_dssp EEEETTTEE-EEEEEEECSSGGGHHHHHHHHHHHHHHHTC-CCBCCSCHHHHH
T ss_pred EEeecCCee-EEEEEEecCCcccHHHHHHHHHHHHHHcCC-CCceeccHHHHH
Confidence 999999986 9788542 35678899999999 999999999975
No 111
>2fbl_A Hypothetical protein NE1496; APC5855, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.90A {Nitrosomonas europaea} SCOP: d.63.1.2
Probab=98.28 E-value=3.8e-07 Score=89.00 Aligned_cols=78 Identities=9% Similarity=0.109 Sum_probs=60.1
Q ss_pred eeeecceeEEEeeCceeeeccceeeccccceeeec---eeccchhccccEEEEEEeeceeeEeeCe-eEEeeehhcc-cc
Q 002965 284 KMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR---MTLGGLLDLGYSVVASYKRASTYVVYGN-LSVSFETIDT-LD 358 (862)
Q Consensus 284 RiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v---~~~~~L~~LGy~~~~~~~K~R~~~~~~~-~~v~lD~v~~-lG 358 (862)
|||..++++.|||||+. + .+|.|+|..| .+..+|..+ ....++|+|..|.+++ ..++||.++| ++
T Consensus 40 RvR~~g~~~~lT~Kg~~----g---~~R~E~E~~I~~~~~~~ll~~~---~~~~I~K~Ry~~~~~~~~~~evD~f~g~~~ 109 (153)
T 2fbl_A 40 RLRQQGTEYFMTLKSEG----G---LSRQEYEIQIDVTQFEMLWPAT---EGRRVEKTRYSGKLPDGQLFELDVFAGHLS 109 (153)
T ss_dssp EEEEETTEEEEEEEC-------------CEEEEEECHHHHHHHGGGG---TTSEEEEEEEEEECTTCCEEEEEEECGGGT
T ss_pred EEEEeCCEEEEEEEcCC----C---ceeEEEEEECCHHHHHHHHhhC---CCCEEEEEEEEEEcCCcEEEEEEEECCcCC
Confidence 99999999999999887 5 6899999999 566666544 2678999999999998 9999999987 33
Q ss_pred -ceEEEEEcCCccc
Q 002965 359 -ETFMVLRGTNRKT 371 (862)
Q Consensus 359 -~~FvEiE~~~~~~ 371 (862)
-.++|||..++++
T Consensus 110 gL~~aEvE~~~e~e 123 (153)
T 2fbl_A 110 PLMLVEVEFLSEDA 123 (153)
T ss_dssp TCEEEEEEESSHHH
T ss_pred CeEEEEEEecCccc
Confidence 3499999876544
No 112
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.27 E-value=6.2e-07 Score=88.53 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=30.5
Q ss_pred EEEeecCCCCCCcchHHHHhhhceeeE--EEeeccccc
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVIGCT--LISMENYRV 98 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~--vI~~D~~~~ 98 (862)
.+|.|+|++||||||+|+.|++.++.. .+++|.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~ 41 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIE 41 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhh
Confidence 579999999999999999999988754 456888754
No 113
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.27 E-value=9.8e-08 Score=94.82 Aligned_cols=37 Identities=30% Similarity=0.460 Sum_probs=33.8
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeeccccc
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~ 98 (862)
+.+|.|+|++||||||+++.|++.+|+.++++|++.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~ 47 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAR 47 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHh
Confidence 4568899999999999999999999999999999755
No 114
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.26 E-value=2.3e-07 Score=94.34 Aligned_cols=161 Identities=17% Similarity=0.134 Sum_probs=76.5
Q ss_pred cCCeEEEeecCCCCCCcchHHHHhhhceee-EEEeecccccccCC----CCCCCccchHHHHHhhhhhhcCCCccccccc
Q 002965 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGC-TLISMENYRVGVDE----GNDLDSIDFDALVQNLQDLTEGKDTLIPMFD 133 (862)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~~Lg~-~vI~~D~~~~~~~~----~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~ 133 (862)
..+..+|+|+|++||||||+++.|++.++. ...+....-+.... .....-.+.+.+.+.+. .+.-+....+.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 85 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLK---EGQFLEFDKYA 85 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHH---TTCEEEEEEET
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHH---cCCCEEeHHhC
Confidence 455678999999999999999999987742 22222221111110 00111122233332221 12222222221
Q ss_pred cccccccc-cceeeccCceEEEEcccchhhHhhhhcc---c-eEEEEE-eceeeeeeeeeecccCCccchhhHHhhh-hh
Q 002965 134 YQQKNRIG-SKVIKGASSGVVIVDGTYALDARLRSLL---D-IRVAVV-GGVHFSLISKVQYDIGDSCSLDSLIDSI-FP 206 (862)
Q Consensus 134 ~~~~~~~~-~~~~~~~~~~vVIvEG~~l~~~~l~~~~---D-~~I~Vd-a~~~~~l~R~i~RD~~~~~~~e~~~~~~-~p 206 (862)
...+.... ...........+|+++..-....+...+ + ..|||+ ++.+...+|...|.........+.+... .+
T Consensus 86 ~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~ 165 (204)
T 2qor_A 86 NNFYGTLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTEKPEEINKRMQELTRE 165 (204)
T ss_dssp TEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred CCeecCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 11111100 0000112456788876543333444443 3 789998 8888877776666422111222222211 11
Q ss_pred hhhcccCCCcccceeecCCc
Q 002965 207 LFRKHIEPDLHHAQIRINNR 226 (862)
Q Consensus 207 ~~~k~Iep~~~~ADiII~N~ 226 (862)
.... ....||++|.|+
T Consensus 166 ~~~~----~~~~~d~vi~n~ 181 (204)
T 2qor_A 166 MDEA----DKVGFNYFIVND 181 (204)
T ss_dssp HHHH----HHHTCSEEEECS
T ss_pred HHHh----hhccCcEEEECc
Confidence 1100 245789999887
No 115
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.23 E-value=4.8e-07 Score=93.95 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=34.3
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhceeeEEEeeccccc
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~ 98 (862)
.+++|+|+|++||||||+|+.||+.||+.+++.|.+..
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~ 50 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKL 50 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHHH
Confidence 45799999999999999999999999999999777644
No 116
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.23 E-value=3.2e-07 Score=100.16 Aligned_cols=172 Identities=19% Similarity=0.216 Sum_probs=57.1
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeeccc--ccccCCCC-CCCccchHHHHHhhhhhhcCCCcccccccccccc
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDEGN-DLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~~~~-~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~ 138 (862)
+.+|.|+||+||||||+|..|++.+|+.+|++|++ |+++.-.. .|..-......+++.+...... ....-++....
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~lid~~~~~~-~~~~~~F~~~a 83 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAE-SYSAAEFRADA 83 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTS-CCCHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEeeccCccc-ccCHHHHHHHH
Confidence 35899999999999999999999999999999996 66554322 1221111111111111111100 00000111111
Q ss_pred ccccceeeccCceEEEEcccchhhHhhhhcc-ceEEEEEeceeeeeeeeeecccCCccchhhHHhhhhhhhhcccCCCcc
Q 002965 139 RIGSKVIKGASSGVVIVDGTYALDARLRSLL-DIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLH 217 (862)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~-D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~~~~~~p~~~k~Iep~~~ 217 (862)
.............+|++.|..++...+..-. ++.- .+.+ ++..+.......+ .+ ..+.+.-+-+..
T Consensus 84 ~~~i~~i~~~g~~~IlvGGt~~y~~all~g~~~~p~---~~~~--~R~~l~~~~~~~g-~~-------~l~~~L~~~Dp~ 150 (323)
T 3crm_A 84 LAAMAKATARGRIPLLVGGTMLYYKALLEGLADMPG---ADPE--VRAAIEAEAQAEG-WE-------ALHRQLAEVDPE 150 (323)
T ss_dssp HHHHHHHHHTTCEEEEEESCHHHHHHHHCCC-------------------------------------------------
T ss_pred HHHHHHHHHcCCeEEEECCchhhHHHHHcCCCCCCC---CCHH--HHHHHHHHHHHcC-HH-------HHHHHHHHhCHH
Confidence 0000111123456788889888876555322 2211 1111 1112211110000 00 122222233345
Q ss_pred cceeecCCccchhhHhhhhhhccccC-CCCcccccccc
Q 002965 218 HAQIRINNRFVSSFREAIYKLKCRSE-APGACSISAFQ 254 (862)
Q Consensus 218 ~ADiII~N~~~~~~~~~~y~lk~~~~-~l~g~~~~~~~ 254 (862)
.|.-|-.|| ++.++++++. ..+|.+.+.+.
T Consensus 151 ~a~~i~~nd-------~~Ri~RALEv~~~tG~~~s~~~ 181 (323)
T 3crm_A 151 SAARIHPND-------PQRLMRALEVYRLGGVSMSDLR 181 (323)
T ss_dssp --------------------------------------
T ss_pred HHhhcCCCC-------HHHHHHHHHHHHHHCCCHHHHH
Confidence 677777888 8899999998 77787765543
No 117
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.23 E-value=1.1e-07 Score=93.29 Aligned_cols=39 Identities=26% Similarity=0.257 Sum_probs=34.6
Q ss_pred CcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
..-+|+|+|++||||||+|+.|++.+|..++++|++...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~ 44 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISE 44 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHH
Confidence 345899999999999999999999999999999998764
No 118
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.22 E-value=4.3e-07 Score=92.05 Aligned_cols=40 Identities=33% Similarity=0.442 Sum_probs=35.1
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
..+.+|+|.|++||||||+++.|+..+|..+++.|++...
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~ 66 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSP 66 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccH
Confidence 3567899999999999999999999899999999998653
No 119
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.22 E-value=6.7e-07 Score=90.76 Aligned_cols=36 Identities=14% Similarity=0.148 Sum_probs=30.1
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhceeeEEEeeccc
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY 96 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~ 96 (862)
++.+|+|+|++||||||+|+.|++.+|...+++|.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~ 44 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHL 44 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 346899999999999999999999888766666543
No 120
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=98.20 E-value=2.8e-08 Score=107.55 Aligned_cols=174 Identities=18% Similarity=0.163 Sum_probs=91.5
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceeeEEEeeccc--ccccCCCCC-CCccchHHHHHhhhhhhcCCCcccccccccc
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDEGND-LDSIDFDALVQNLQDLTEGKDTLIPMFDYQQ 136 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~~~~~-~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~ 136 (862)
..+.+|.|+||+||||||||..|++.++..+|++|.+ |++++-... |..-+.+...++|-+...-.+ .+..-++..
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e-~~s~~~f~~ 86 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQ-AYSAADFRR 86 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTS-CCCHHHHHH
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccc-cccHHHHHH
Confidence 3457899999999999999999999999999999995 887765433 333333333333333222211 111111111
Q ss_pred ccccccceeeccCceEEEEcccchhhHhhhhcc-ceEEEEEeceeeeeeeeeecccCCccchhhHHhhhhhhhhcccCCC
Q 002965 137 KNRIGSKVIKGASSGVVIVDGTYALDARLRSLL-DIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPD 215 (862)
Q Consensus 137 ~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~-D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~~~~~~p~~~k~Iep~ 215 (862)
........+.......+++.|..+|-..+..-. ++. .++++ ++..+... ...... ...+++.-+-+
T Consensus 87 ~a~~~i~~i~~~g~~pilVGGTglYi~all~gl~~~p---~~~~~--~R~~l~~~-~~~~g~-------~~l~~~L~~~D 153 (316)
T 3foz_A 87 DALAEMADITAAGRIPLLVGGTMLYFKALLEGLSPLP---SADPE--VRARIEQQ-AAEQGW-------ESLHRQLQEVD 153 (316)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHSCCCCCC---CCCHH--HHHHHHHH-HHHHHH-------HHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCcEEEEcCcHHHHHHHHcCcCCCC---CCCHH--HHHHHHHH-HHhcCH-------HHHHHHHHHhC
Confidence 111111111223445689999999876555322 221 11111 11111110 000000 11112111222
Q ss_pred cccceeecCCccchhhHhhhhhhccccC-CCCcccccccc
Q 002965 216 LHHAQIRINNRFVSSFREAIYKLKCRSE-APGACSISAFQ 254 (862)
Q Consensus 216 ~~~ADiII~N~~~~~~~~~~y~lk~~~~-~l~g~~~~~~~ 254 (862)
...|.-|-.|| +..++++++. ..+|.+.+.+.
T Consensus 154 P~~A~ri~pnd-------~~Ri~RALEV~~~TG~~~S~~~ 186 (316)
T 3foz_A 154 PVAAARIHPND-------PQRLSRALEVFFISGKTLTELT 186 (316)
T ss_dssp HHHHHHSCTTC-------HHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHhhCCCcc-------HHHHHHHHHHHHHHCCCHHHHh
Confidence 34555666788 7888888887 66777665554
No 121
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.20 E-value=2.4e-07 Score=94.66 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=33.7
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002965 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
.|+|+||+||||||+|+.|++.+|..++++|++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~ 37 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRA 37 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHH
Confidence 588999999999999999999999999999999875
No 122
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.19 E-value=4e-07 Score=93.57 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=35.4
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccc
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~ 99 (862)
+++.|+|.|++||||||+|+.|++.+|+.++++|++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~ 41 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRS 41 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHH
Confidence 456799999999999999999999999999999998664
No 123
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.19 E-value=1.6e-07 Score=96.67 Aligned_cols=120 Identities=13% Similarity=-0.023 Sum_probs=66.9
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCcccccccccccccc
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI 140 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~~ 140 (862)
+++.|.|.|++||||||+|+.|++.+|+.++++|++.+.....+.+- . ..+.+.+.. |..+. +......+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~--g-~~i~~~~~~---g~~~~----~~~~~~~i 73 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKI--G-LEAKSIIES---GNFVG----DEIVLGLV 73 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--C--C-HHHHHHHHH---TCCCC----HHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHH--H-HHHHHHHHC---CCcCC----HHHHHHHH
Confidence 34679999999999999999999999999999999866432221111 0 111122111 11100 00000000
Q ss_pred ccceeeccCceEEEEcccchh---hHhhh-------hccceEEEEEeceeeeeeeeeecc
Q 002965 141 GSKVIKGASSGVVIVDGTYAL---DARLR-------SLLDIRVAVVGGVHFSLISKVQYD 190 (862)
Q Consensus 141 ~~~~~~~~~~~vVIvEG~~l~---~~~l~-------~~~D~~I~Vda~~~~~l~R~i~RD 190 (862)
............+|++|.... ...+. ...|.+||++++.+..++|...|.
T Consensus 74 ~~~l~~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~ 133 (217)
T 3be4_A 74 KEKFDLGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRC 133 (217)
T ss_dssp HHHHHTTTTTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred HHHHhccccCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 000000112335778874221 01111 246899999999999988877664
No 124
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.19 E-value=8.3e-08 Score=96.18 Aligned_cols=120 Identities=17% Similarity=0.136 Sum_probs=69.5
Q ss_pred CcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCCCcccchhhhcccchhhcCCccccceeeeccc
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET 595 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~P~yd~~~ 595 (862)
++.+|+|+|++||||||+|+.|++.++..++++|+++...... ++..-..+.+. +..|+.+.. ...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~-------~~~~~~~i~~~---~~~g~~~~~----~~~ 73 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSS-------GSARGKKLSEI---MEKGQLVPL----ETV 73 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHT-------TCHHHHHHHHH---HHTTCCCCH----HHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHc-------CChHHHHHHHH---HHcCCcCCH----HHH
Confidence 5678999999999999999999999999999999988752110 00000111111 112221100 000
Q ss_pred ccccCceee-eecccceeEEEcceecccHh---h---hhccceeeeeecccchheeheeecc
Q 002965 596 GARSGFKEL-EVSEDCGVIIFEGVYALHPE---I---RKSLDLWIAVVGGVHSHLISRVQRD 650 (862)
Q Consensus 596 ~~r~~~~~~-~~~~~~~vVIvEG~~~~~~~---l---~~~~D~~I~v~~~~d~rl~Rri~Rd 650 (862)
..... ..+ ........+|++|....... + ....|..||++++.+.++.|...|.
T Consensus 74 ~~~~~-~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 134 (196)
T 2c95_A 74 LDMLR-DAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRG 134 (196)
T ss_dssp HHHHH-HHHHHHTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHH-HHHHhccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccC
Confidence 00000 000 00112467899984332211 1 2446899999999999998877765
No 125
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.18 E-value=1.5e-07 Score=94.81 Aligned_cols=29 Identities=21% Similarity=0.562 Sum_probs=26.1
Q ss_pred EEeecCCCCCCcchHHHHhhhceeeEEEe
Q 002965 64 TVGIGGPSGSGKTSLAEKLASVIGCTLIS 92 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~ 92 (862)
+|+|.|++||||||+++.|++.+|..+++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 69999999999999999999999976653
No 126
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.18 E-value=3.7e-07 Score=94.40 Aligned_cols=118 Identities=11% Similarity=0.017 Sum_probs=66.5
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhh-cCCCccccccccccccc
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLT-EGKDTLIPMFDYQQKNR 139 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~-~~~~i~~p~~~~~~~~~ 139 (862)
++.+|+|.|++||||||+|+.|++.+|..++++|++.+.....+.+ +...+..+. .|..+...........+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~-------~g~~i~~~~~~g~~~~~~~~~~~~~~~ 78 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTE-------IGVLAKAFIDQGKLIPDDVMTRLALHE 78 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCH-------HHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCCh-------HHHHHHHHHHcCCcCCHHHHHHHHHHH
Confidence 4578999999999999999999999999999999986632211111 011111111 11110000000000001
Q ss_pred cccceeeccCceEEEEcccchhh---Hhhh--hccceEEEEEeceeeeeeeeeecc
Q 002965 140 IGSKVIKGASSGVVIVDGTYALD---ARLR--SLLDIRVAVVGGVHFSLISKVQYD 190 (862)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~l~~---~~l~--~~~D~~I~Vda~~~~~l~R~i~RD 190 (862)
... .....+|++|..... ..+. ...|.+||++++.+.+++|...|.
T Consensus 79 l~~-----~~~~~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~~~R~~~R~ 129 (227)
T 1zd8_A 79 LKN-----LTQYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARW 129 (227)
T ss_dssp HHT-----CTTSCEEEESCCCSHHHHHHHHTTSCCCEEEEEECCHHHHHHHHTCEE
T ss_pred Hhc-----ccCCCEEEeCCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHcCc
Confidence 000 012346778743321 1222 346899999999999988877663
No 127
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.18 E-value=4.7e-07 Score=89.70 Aligned_cols=31 Identities=29% Similarity=0.390 Sum_probs=23.8
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhceeeEEE
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLI 91 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI 91 (862)
++.+|.|+|++||||||+|+.|++.+|..++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 4578999999999999999999999998777
No 128
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.17 E-value=2.8e-08 Score=100.16 Aligned_cols=28 Identities=25% Similarity=0.570 Sum_probs=25.1
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEE
Q 002965 519 IVGIGGPSGSGKTSLAHKMANIVGCEVV 546 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vi 546 (862)
+|+|.|++||||||+++.|++.++..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 6899999999999999999999886554
No 129
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.16 E-value=9.7e-07 Score=89.11 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=23.4
Q ss_pred CcEEEeecCCCCCCcchhHhhhccce
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
...+|+|.||+||||||+++.|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999999999999999999876
No 130
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.16 E-value=4.6e-07 Score=92.67 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=33.7
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002965 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
.|+|+||+||||||+|+.|++.+|..++++|++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~ 37 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRA 37 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHH
Confidence 588999999999999999999999999999999875
No 131
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.16 E-value=2.1e-07 Score=98.45 Aligned_cols=35 Identities=29% Similarity=0.464 Sum_probs=33.0
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeeccc
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY 96 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~ 96 (862)
|.+|+|+|++||||||+|+.|++.+|+.++++|++
T Consensus 1 M~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 1 MLLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred CeEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 46899999999999999999999999999999996
No 132
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.15 E-value=4e-07 Score=90.39 Aligned_cols=33 Identities=30% Similarity=0.444 Sum_probs=28.0
Q ss_pred eEEEeecCCCCCCcchHHHHhhhce---eeEEEeec
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVI---GCTLISME 94 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L---g~~vI~~D 94 (862)
..+|+|+|++||||||+++.|+..+ |..++++|
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 4678999999999999999999987 86666544
No 133
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.15 E-value=1.3e-07 Score=94.23 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=34.4
Q ss_pred cEEEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002965 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
+.+|.|.|++||||||+|+.|++.+|..++++|++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~ 42 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEK 42 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHH
Confidence 45788999999999999999999999999999998653
No 134
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.15 E-value=4.6e-07 Score=90.17 Aligned_cols=37 Identities=16% Similarity=0.371 Sum_probs=32.6
Q ss_pred eEEEeecCCCCCCcchHHHHhhhcee-----eEEEeeccccc
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRV 98 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~ 98 (862)
|.+|.|+|++||||||+|+.|++.++ +.++++|++..
T Consensus 1 M~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~ 42 (194)
T 1nks_A 1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFML 42 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHH
Confidence 46899999999999999999999988 88888887653
No 135
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.14 E-value=1.4e-07 Score=95.56 Aligned_cols=39 Identities=26% Similarity=0.399 Sum_probs=35.0
Q ss_pred CcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
+..+|+|.|++||||||+++.|++.+|..++++|++...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~ 62 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEE 62 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHH
Confidence 345789999999999999999999999999999998754
No 136
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.14 E-value=1.7e-06 Score=86.64 Aligned_cols=24 Identities=42% Similarity=0.653 Sum_probs=21.5
Q ss_pred EEEeecCCCCCCcchHHHHhhhce
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L 86 (862)
.+|||+||+||||||+++.|+..+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999998755
No 137
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.13 E-value=3.8e-07 Score=99.92 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=38.1
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhceeeEEEeeccc--ccccCCC
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDEG 103 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~~~ 103 (862)
++.+|.|+||+||||||||..||+.++..+||+|.+ |++++-.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIg 83 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDIT 83 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeee
Confidence 446899999999999999999999999999999996 7776543
No 138
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.13 E-value=3.6e-07 Score=94.51 Aligned_cols=116 Identities=13% Similarity=0.036 Sum_probs=67.2
Q ss_pred EEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCccccccccccccccccc
Q 002965 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~~~~~ 143 (862)
.|+|.|++||||||+|+.|++.+|..++++|++.+.....+.+ .-..+.+.+. .|..+ | +......+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~---~g~~i~~~~~---~g~~~--~--~~~~~~~i~~~ 71 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTE---LGKKAKEFID---RGDLV--P--DDITIPMVLET 71 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCH---HHHHHHHHHT---TTCCC--C--HHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCH---HHHHHHHHHH---cCCcC--c--HHHHHHHHHHH
Confidence 5899999999999999999999999999999986643222211 0011222221 22111 0 00001111000
Q ss_pred eeeccCceEEEEcccchh-h--Hhh-------hhccceEEEEEeceeeeeeeeeecc
Q 002965 144 VIKGASSGVVIVDGTYAL-D--ARL-------RSLLDIRVAVVGGVHFSLISKVQYD 190 (862)
Q Consensus 144 ~~~~~~~~vVIvEG~~l~-~--~~l-------~~~~D~~I~Vda~~~~~l~R~i~RD 190 (862)
..... ...||++|.... . ..+ ....|.+||+++|++..++|...|.
T Consensus 72 l~~~~-g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 127 (223)
T 2xb4_A 72 LESKG-KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRR 127 (223)
T ss_dssp HHHHC-TTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBC
T ss_pred Hhccc-CCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHccc
Confidence 00001 346888984321 1 112 1246899999999999888887774
No 139
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.12 E-value=1.1e-06 Score=91.09 Aligned_cols=72 Identities=6% Similarity=-0.016 Sum_probs=33.6
Q ss_pred ceEEEEcccchhhHhhhhcc-c--eEEEEEe-ceeeeeeeeeecccCCccchhhHHhhhhhhhhcccCCCcccceeecCC
Q 002965 150 SGVVIVDGTYALDARLRSLL-D--IRVAVVG-GVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINN 225 (862)
Q Consensus 150 ~~vVIvEG~~l~~~~l~~~~-D--~~I~Vda-~~~~~l~R~i~RD~~~~~~~e~~~~~~~p~~~k~Iep~~~~ADiII~N 225 (862)
...+|++........+...+ + ..||+.. +.+...+|...|+........+.++.+.+...+ ...||+||.|
T Consensus 118 ~~~vild~~~~g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~-----~~~~d~vI~n 192 (231)
T 3lnc_A 118 GVSTLLVIDWQGAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRADDSEVVEARLKGAAFEISH-----CEAYDYVIVN 192 (231)
T ss_dssp TCEEEEECCHHHHHHHHHHSGGGEEEEEEECSCHHHHHHC--------------CHHHHHHHHTT-----GGGSSEEEEC
T ss_pred CCeEEEEcCHHHHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh-----hcCCeEEEEC
Confidence 34677665333333333334 3 3455544 556666677777654444455556666665544 5789999998
Q ss_pred c
Q 002965 226 R 226 (862)
Q Consensus 226 ~ 226 (862)
+
T Consensus 193 ~ 193 (231)
T 3lnc_A 193 E 193 (231)
T ss_dssp S
T ss_pred c
Confidence 8
No 140
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.11 E-value=4.5e-08 Score=101.83 Aligned_cols=169 Identities=16% Similarity=0.087 Sum_probs=91.0
Q ss_pred CCcEEEeecCCCCCCcchhHhhhcccee-eeEEeecccccc----cccccCccCCCccc----c----hhhhccc----c
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-CEVVSLESYFKS----EQVKDFKYDDFSSL----D----LSLLSKN----I 577 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~-~~vislDdfy~~----~~~~~~n~~~p~t~----D----~~lL~~~----L 577 (862)
.+..+|+|.|++||||||+++.|+..-| +.+...+..... .......+.++..+ . +..+.+. +
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~i 97 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLTMLQSHTAPTN 97 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGGTTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhccCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHHHHHHHHhccc
Confidence 4568999999999999999999998733 333333321110 00000000111100 0 0011111 1
Q ss_pred h-hhcCCccccceeeecccccccCceeeeecccceeEEEcceeccc-Hhhhhccceeeeeecccchheeheeeccccccc
Q 002965 578 S-DIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMG 655 (862)
Q Consensus 578 ~-~L~~g~~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg 655 (862)
. .+..|..+..++|.++.....+. ...+..+.++++|+.+. +......|+.||+++|+++++.|...|+...
T Consensus 98 ~~~l~~~r~v~~dry~~s~~ayq~~----~l~~~~~~~~~~~~~~~~~~~~~~pD~vi~Ld~~~e~~~~Ri~~R~r~~-- 171 (230)
T 2vp4_A 98 KKLKIMERSIFSARYCFVENMRRNG----SLEQGMYNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQRARSE-- 171 (230)
T ss_dssp SSEEEEESCHHHHHHTHHHHHHHHT----SSCHHHHHHHHHHHHHHHHHBCCCCSEEEEEECCHHHHHHHHHHHCCGG--
T ss_pred cCceeecCCccccHHHHHHHHHHcC----CCChHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCHHHHHHHHHHcCCcc--
Confidence 1 12345566667777765433211 12345677888887654 3345678999999999999999976663210
Q ss_pred ccccccceehhhhhhhhhccccc--cccc-ccccccC
Q 002965 656 CFMSQNDIMMTVFPMFQQHIEPH--LVHA-HLKIRND 689 (862)
Q Consensus 656 ~~~~~~~~~~~v~p~~~~~I~p~--~~~A-DivI~n~ 689 (862)
...+..++...+...|.+++... ...+ .++|+++
T Consensus 172 e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~ 208 (230)
T 2vp4_A 172 ESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDAD 208 (230)
T ss_dssp GTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECC
T ss_pred cccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECC
Confidence 11111246667778888775322 2233 3566654
No 141
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.10 E-value=2.3e-06 Score=87.41 Aligned_cols=42 Identities=29% Similarity=0.351 Sum_probs=34.8
Q ss_pred cCCeEEEeecCCCCCCcchHHHHhhhcee------eEEEeeccccccc
Q 002965 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIG------CTLISMENYRVGV 100 (862)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~~Lg------~~vI~~D~~~~~~ 100 (862)
.....+|.|.|++||||||+++.|++.++ +.+++.|.+...+
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l 69 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGL 69 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhh
Confidence 34557899999999999999999999887 7788888876543
No 142
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.10 E-value=1.5e-06 Score=88.79 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=23.9
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhcee
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVIG 87 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg 87 (862)
+..+|+|+||+||||||+++.|+..++
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456899999999999999999998764
No 143
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.09 E-value=7.9e-07 Score=91.88 Aligned_cols=123 Identities=11% Similarity=-0.000 Sum_probs=71.2
Q ss_pred cCCeEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhh-hhcCCCccccccccccc
Q 002965 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD-LTEGKDTLIPMFDYQQK 137 (862)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~-l~~~~~i~~p~~~~~~~ 137 (862)
..++.+|.|.||+||||||.|+.|++.+|+..|+++++.+.....+.+ +...+.. +..|+-+.-........
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~-------lg~~~~~~~~~G~lVpde~~~~lv~ 98 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSP-------KGKELKAMMERGELVPLEVVLALLK 98 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCH-------HHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCc-------hHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 456788999999999999999999999999999999987643322211 1111111 11232211111111111
Q ss_pred cccccceeeccCceEEEEcccch--hh-Hhh---hhccceEEEEEeceeeeeeeeeeccc
Q 002965 138 NRIGSKVIKGASSGVVIVDGTYA--LD-ARL---RSLLDIRVAVVGGVHFSLISKVQYDI 191 (862)
Q Consensus 138 ~~~~~~~~~~~~~~vVIvEG~~l--~~-~~l---~~~~D~~I~Vda~~~~~l~R~i~RD~ 191 (862)
++... ......-+|++|.=- -+ ..+ ....|.+|+++++.+...+|...|..
T Consensus 99 ~~l~~---~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~ 155 (217)
T 3umf_A 99 EAMIK---LVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAE 155 (217)
T ss_dssp HHHHH---HTTTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC--
T ss_pred HHHhh---ccccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccc
Confidence 11100 011233578888421 11 111 22468999999999999888887753
No 144
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.09 E-value=2.4e-06 Score=86.45 Aligned_cols=42 Identities=31% Similarity=0.445 Sum_probs=35.1
Q ss_pred cCCeEEEeecCCCCCCcchHHHHhhhce---eeE--EEeeccccccc
Q 002965 59 KGGIVTVGIGGPSGSGKTSLAEKLASVI---GCT--LISMENYRVGV 100 (862)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~~L---g~~--vI~~D~~~~~~ 100 (862)
..+..+|+|+|++||||||+++.|+..+ |.. .++.|++...+
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~ 68 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGL 68 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHh
Confidence 4556899999999999999999999988 544 78888886644
No 145
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.06 E-value=3.4e-07 Score=93.78 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=33.2
Q ss_pred EEeecCCCCCCcchHHHHhhhceeeEEEeecccccc
Q 002965 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~ 99 (862)
.|+|+|++||||||+|+.|++.+|+.++++|++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~ 37 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRA 37 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHH
Confidence 489999999999999999999999999999998664
No 146
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.05 E-value=4.1e-07 Score=94.58 Aligned_cols=40 Identities=25% Similarity=0.243 Sum_probs=35.6
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccc
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~ 99 (862)
..+..|.|.|++||||||+|+.|++.+|+.++++|++.+.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~ 53 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRA 53 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHH
Confidence 4456799999999999999999999999999999997653
No 147
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.04 E-value=8.2e-07 Score=87.43 Aligned_cols=37 Identities=24% Similarity=0.292 Sum_probs=33.2
Q ss_pred cEEEeecCCCCCCcchhHhhhcc-ceeeeEEeeccccc
Q 002965 517 PVIVGIGGPSGSGKTSLAHKMAN-IVGCEVVSLESYFK 553 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~-~l~~~vislDdfy~ 553 (862)
|.+|.|.|++||||||+|+.|++ .++..++++|.+..
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~ 39 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQ 39 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHH
Confidence 57899999999999999999998 68899999988754
No 148
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.03 E-value=1.8e-06 Score=92.93 Aligned_cols=112 Identities=16% Similarity=0.045 Sum_probs=66.6
Q ss_pred eEEEeecCCCCCCcchHHHHhhhce-eeEEEeecccccccCCC--CCCCccchH--H-HHHhhhhhhcCCCccccccccc
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVI-GCTLISMENYRVGVDEG--NDLDSIDFD--A-LVQNLQDLTEGKDTLIPMFDYQ 135 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L-g~~vI~~D~~~~~~~~~--~~~~s~d~~--~-l~~~L~~l~~~~~i~~p~~~~~ 135 (862)
+.+|.|+|++||||||+|+.|++.+ |+.+|++|.++..+... +..+.++.. . ..+.+....
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------------- 68 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTA------------- 68 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCCC---CCHHHHHHHHHHHHHHH-------------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHHHhccCCcccccccchhhhhHHHHHHHHHH-------------
Confidence 3689999999999999999999864 89999999875533221 110112211 1 001111000
Q ss_pred cccccccceeeccCceEEEEcccchhh---Hhhhhc------cceEEEEEeceeeeeeeeeeccc
Q 002965 136 QKNRIGSKVIKGASSGVVIVDGTYALD---ARLRSL------LDIRVAVVGGVHFSLISKVQYDI 191 (862)
Q Consensus 136 ~~~~~~~~~~~~~~~~vVIvEG~~l~~---~~l~~~------~D~~I~Vda~~~~~l~R~i~RD~ 191 (862)
..... .......+|++|..... ..+... -+..||++++.++.++|...|..
T Consensus 69 -~~~l~----~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~ 128 (301)
T 1ltq_A 69 -KSILY----GGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT 128 (301)
T ss_dssp -HHHTT----SCTTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGG
T ss_pred -HHHHh----hccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccC
Confidence 00000 00234578999977543 223222 23789999999999888887763
No 149
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.02 E-value=8.4e-07 Score=88.23 Aligned_cols=38 Identities=21% Similarity=0.262 Sum_probs=34.3
Q ss_pred cEEEeecCCCCCCcchhHhhhcccee-----eeEEeecccccc
Q 002965 517 PVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKS 554 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdfy~~ 554 (862)
+.+|.|+|++||||||+++.|++.++ ..++++|++++.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~ 45 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFE 45 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHH
Confidence 45799999999999999999999998 889999998764
No 150
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.01 E-value=1.9e-06 Score=86.12 Aligned_cols=39 Identities=28% Similarity=0.371 Sum_probs=35.5
Q ss_pred CcEEEeecCCCCCCcchhHhhhccc-eeeeEEeecccccc
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANI-VGCEVVSLESYFKS 554 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~-l~~~vislDdfy~~ 554 (862)
.+.+|+|+|++||||||+++.|++. +|+.++++|++...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~ 48 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKE 48 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHH
Confidence 4568999999999999999999998 79999999998775
No 151
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.00 E-value=3.4e-07 Score=95.09 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=34.3
Q ss_pred CcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
...+|+|+|++||||||+++.|++.+|..+++.|.+...
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~~ 51 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLA 51 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHHHH
Confidence 467999999999999999999999999999997665543
No 152
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.98 E-value=2.3e-07 Score=95.49 Aligned_cols=40 Identities=23% Similarity=0.216 Sum_probs=35.7
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccc
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~ 99 (862)
++|.+|.|.|++||||||+|+.|++.+|...+++|++.+.
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~ 42 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRA 42 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHH
Confidence 3456799999999999999999999999999999998663
No 153
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=97.98 E-value=1.9e-06 Score=100.98 Aligned_cols=107 Identities=22% Similarity=0.243 Sum_probs=65.2
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhcee-----eEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCcccccccc
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDY 134 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~ 134 (862)
..+.+|.++|++||||||+|+.|++.++ +.+++.|.+.+.+.........+... .+..+..
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~~f~~~er~~---~l~~i~~----------- 435 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRIT---NILRVGF----------- 435 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTCCSSHHHHHH---HHHHHHH-----------
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcccccccHHHHHH---HHHHHHH-----------
Confidence 3467899999999999999999999886 48899998765443211111111111 1111100
Q ss_pred ccccccccceeeccCceEEEEcccchhhH---hhhhcc---c-eEEEEEeceeeeeeeee
Q 002965 135 QQKNRIGSKVIKGASSGVVIVDGTYALDA---RLRSLL---D-IRVAVVGGVHFSLISKV 187 (862)
Q Consensus 135 ~~~~~~~~~~~~~~~~~vVIvEG~~l~~~---~l~~~~---D-~~I~Vda~~~~~l~R~i 187 (862)
... .. ......||++++.+++. .+...+ | ..|||+++.+++.+|..
T Consensus 436 ~~~-----~~--l~~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~ 488 (546)
T 2gks_A 436 VAS-----EI--VKHNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDV 488 (546)
T ss_dssp HHH-----HH--HHTTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCC
T ss_pred HHH-----HH--HhCCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhh
Confidence 000 00 11235788888776552 233333 6 88999999999877754
No 154
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.90 E-value=9.3e-06 Score=82.34 Aligned_cols=33 Identities=15% Similarity=0.156 Sum_probs=26.9
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhceeeEEEee
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISM 93 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~ 93 (862)
++.+|+|+|++||||||+|+.|++.++...++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v 40 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRA 40 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 456899999999999999999999876433333
No 155
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.89 E-value=5.2e-06 Score=82.77 Aligned_cols=41 Identities=29% Similarity=0.398 Sum_probs=33.6
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhcee-----eEEEeeccccccc
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGV 100 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~ 100 (862)
.+..+|+|+|++||||||+++.|++.++ +.+++.|.+...+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~ 56 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTV 56 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHH
Confidence 3457899999999999999999998875 5678888875543
No 156
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.88 E-value=3.2e-06 Score=94.66 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=37.6
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeecc--cccccCCC
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN--YRVGVDEG 103 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~--~~~~~~~~ 103 (862)
+.+|+|+||+||||||||..|++.++..+|++|. +|+++.-.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~ 45 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPII 45 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccc
Confidence 4689999999999999999999999999999999 68877643
No 157
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.88 E-value=9.6e-07 Score=91.67 Aligned_cols=61 Identities=5% Similarity=0.030 Sum_probs=38.6
Q ss_pred hhccceEEEEEeceeeeeeeeeecccCCcc-chhhHHhhhhhhhhcccCCC--cccce-eecCCc
Q 002965 166 RSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLIDSIFPLFRKHIEPD--LHHAQ-IRINNR 226 (862)
Q Consensus 166 ~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~-~~e~~~~~~~p~~~k~Iep~--~~~AD-iII~N~ 226 (862)
...+|++|||++|++++++|...|+..... ...++.+++...|.++.+.+ ...++ ++|+++
T Consensus 144 ~~~pD~vi~Ld~~~e~~~~Ri~~R~r~~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~ 208 (230)
T 2vp4_A 144 HVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDAD 208 (230)
T ss_dssp CCCCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECC
T ss_pred cCCCCEEEEEeCCHHHHHHHHHHcCCcccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECC
Confidence 456899999999999999998777432111 11145556666666654322 34454 677766
No 158
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.87 E-value=7.1e-06 Score=92.97 Aligned_cols=95 Identities=13% Similarity=0.089 Sum_probs=63.9
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCccccccccccccc
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR 139 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~ 139 (862)
..+.+|.|+|++||||||+|+.|++.+|+.+|+.|.+. .+..+.+.+....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~------------~~~~~~~~~~~~l----------------- 306 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG------------SWQRCVSSCQAAL----------------- 306 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC------------SHHHHHHHHHHHH-----------------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH------------HHHHHHHHHHHHH-----------------
Confidence 45678999999999999999999999999999999972 1122222211111
Q ss_pred cccceeeccCceEEEEcccchhhH---hhhh------ccceEEEEEeceeeeeeeeeeccc
Q 002965 140 IGSKVIKGASSGVVIVDGTYALDA---RLRS------LLDIRVAVVGGVHFSLISKVQYDI 191 (862)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~l~~~---~l~~------~~D~~I~Vda~~~~~l~R~i~RD~ 191 (862)
.....+|+++...... .+.. ..-..||++++.+++++|...|..
T Consensus 307 --------~~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~ 359 (416)
T 3zvl_A 307 --------RQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREM 359 (416)
T ss_dssp --------HTTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHH
T ss_pred --------hcCCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcc
Confidence 1122467777754331 1211 112678999999999999888864
No 159
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.87 E-value=4.3e-06 Score=83.65 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=22.2
Q ss_pred EEEeecCCCCCCcchhHhhhcccee
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
.+|||.||+||||||+++.|...+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4789999999999999999997653
No 160
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.87 E-value=1.6e-06 Score=88.36 Aligned_cols=36 Identities=28% Similarity=0.419 Sum_probs=32.3
Q ss_pred cEEEeecCCCCCCcchhHhhhccceeeeEEeeccccc
Q 002965 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~ 553 (862)
..+|+|+|++||||||+++.|++.||..+++ ++.+.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~ 41 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLD 41 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHH
Confidence 4589999999999999999999999999998 66664
No 161
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.86 E-value=1.6e-06 Score=87.66 Aligned_cols=32 Identities=31% Similarity=0.297 Sum_probs=26.8
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceee--EEEee
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVIGC--TLISM 93 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~--~vI~~ 93 (862)
+.+|+|.|++||||||+|+.|++.++. .++.+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~ 37 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLT 37 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEe
Confidence 468999999999999999999998875 35543
No 162
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.85 E-value=4.5e-06 Score=84.11 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=23.1
Q ss_pred cEEEeecCCCCCCcchhHhhhcccee
Q 002965 517 PVIVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
..+|||.||+||||||+++.|+..+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45899999999999999999998764
No 163
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=97.85 E-value=1.2e-06 Score=91.08 Aligned_cols=118 Identities=14% Similarity=0.098 Sum_probs=68.5
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhh-cCCCcccccccccccccc
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLT-EGKDTLIPMFDYQQKNRI 140 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~-~~~~i~~p~~~~~~~~~~ 140 (862)
.+.+||.|++||||||+|+.|++.+|+.+|+++++.+.....+.+ +.+.+.... .|..+.-........++.
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~-------lG~~i~~~~~~G~lvpdei~~~ll~~~l 80 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTP-------LGVEAKTYMDEGKLVPDSLIIGLVKERL 80 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCH-------HHHHHHHHHTTTCCCCHHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCCh-------HHHHHHHHHhhccccccHHHHHHHHHHH
Confidence 356999999999999999999999999999999986643222111 111112111 122111111111111111
Q ss_pred ccceeeccCceEEEEcccch-h-h-Hhhh---hccceEEEEEeceeeeeeeeeecc
Q 002965 141 GSKVIKGASSGVVIVDGTYA-L-D-ARLR---SLLDIRVAVVGGVHFSLISKVQYD 190 (862)
Q Consensus 141 ~~~~~~~~~~~vVIvEG~~l-~-~-~~l~---~~~D~~I~Vda~~~~~l~R~i~RD 190 (862)
.. .....-+|++|.-- . + ..+. ...|.+|++++|.+..++|...|.
T Consensus 81 ~~----~~~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~ 132 (230)
T 3gmt_A 81 KE----ADCANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRR 132 (230)
T ss_dssp HS----GGGTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEE
T ss_pred hC----cccCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCC
Confidence 10 01112478898522 1 1 2222 246899999999999999988885
No 164
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.84 E-value=2.9e-06 Score=86.17 Aligned_cols=28 Identities=29% Similarity=0.325 Sum_probs=24.4
Q ss_pred CCcEEEeecCCCCCCcchhHhhhcccee
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
..+.+|+|+|||||||||+++.|++.++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3567888999999999999999998774
No 165
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.84 E-value=2.4e-06 Score=84.74 Aligned_cols=40 Identities=25% Similarity=0.403 Sum_probs=35.1
Q ss_pred CcEEEeecCCCCCCcchhHhhhccceeeeEEeeccccccc
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE 555 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~ 555 (862)
.+.+|.|+|++||||||+++.|++.++..++++|++....
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~ 49 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE 49 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhc
Confidence 3456789999999999999999999999999999987643
No 166
>3n10_A Adenylate cyclase 2; CYTH domain, antiparallel barrel, product complex, cyclic AM; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0z_A* 3n0y_A* 2fjt_A
Probab=97.83 E-value=2.6e-05 Score=77.89 Aligned_cols=122 Identities=22% Similarity=0.252 Sum_probs=88.0
Q ss_pred hheeeecCCCCCCCccCCCCeEEEEEecc--eeeEEeeccccCCCeeeccccceeee--hhhhhhhhhccceEEEEEEee
Q 002965 731 IDMYLRLPGIPTNGQLTESDCIRVRICEG--RFALLIREPLREGNFIIQPKVDFDIS--ISTVAGLLNLGYQAVAYIEAS 806 (862)
Q Consensus 731 ~~~Yl~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~f~~~--~~~~~~l~~lg~~~~~~~~~~ 806 (862)
.+.|+-.|+-.- ...+.++|+|..++ ...|....|-. ++..+++|. -.+..-|.+|||+.++.++..
T Consensus 42 ~d~Yfd~p~~~l---~~~~~~lRiR~~~~~~~~~lt~kg~~~------~~e~e~~v~~~~~~~~~l~~lg~~~~~~~~k~ 112 (179)
T 3n10_A 42 KDIYLDANGQDL---AKQQISMVLREMNPSGIRLWIVKGPGA------ERCEASNIEDVSKVQSMLATLGYHPAFTIEKQ 112 (179)
T ss_dssp EEEEEECTTCTT---GGGTCEEEEEEEETTCCEEEEEECSSS------SBEEEEECSCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred EEEEEeCCChhH---HhCCceEEEEecCCCceEEEEEcCCcc------ccceeeccCCHHHHHHHHHhCCCeEEEEEEEE
Confidence 356655553221 24567999998854 44555554432 333344443 345556788999999999988
Q ss_pred eeeeecCeEEEEeeccCCCCCCceEEecc-----C----HHHHhhccceeeec-CcccceehhccC
Q 002965 807 AFIYQDGKILIEVDHLQDAPSPYLQIKGV-----D----KEAVAAAGSTLKLD-GSYTTKVMSLAL 862 (862)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~-~~~~~~~~~~~~ 862 (862)
..+|.-+.+.|++|+++.++. |+.|-.. + ++.+.+++.+|||+ ..-+++||+|+|
T Consensus 113 R~~~~~~~~~v~lD~v~~lG~-f~EiE~e~~~~~~~~~~~~~~~~l~~~LGl~~~~~~~~sY~eLL 177 (179)
T 3n10_A 113 RSIYFVGKFHITVDHLTGLGD-FAEIAIMTDDATELDKLKAECRDFANTFGLQVDQQEPRSYRQLL 177 (179)
T ss_dssp EEEEEETTEEEEEEEETTTEE-EEEEEEEESCGGGHHHHHHHHHHHHHHHTCCGGGBCCSCHHHHH
T ss_pred EEEEEECCEEEEEEeccCCCc-EEEEEEEeCCCccHHHHHHHHHHHHHHcCcChhhcceecHHHHh
Confidence 899999999999999999985 9888642 2 46788999999997 457899999986
No 167
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.82 E-value=3.1e-06 Score=85.80 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=29.9
Q ss_pred CcEEEeecCCCCCCcchhHhhhccceeeeEEeecc
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES 550 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDd 550 (862)
.+.+|+|+|++||||||+|+.|++.++...++.|.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~ 43 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKH 43 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 46789999999999999999999988766666653
No 168
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.80 E-value=3.4e-06 Score=86.63 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=35.5
Q ss_pred CcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
++..|.|.|++||||||+|+.|++.++..++++|++.+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~ 42 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLRE 42 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHH
Confidence 346788999999999999999999999999999999875
No 169
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.76 E-value=5.1e-06 Score=85.09 Aligned_cols=113 Identities=18% Similarity=0.106 Sum_probs=65.4
Q ss_pred EEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhh-hhcCCCcccccccccccccccc
Q 002965 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD-LTEGKDTLIPMFDYQQKNRIGS 142 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~-l~~~~~i~~p~~~~~~~~~~~~ 142 (862)
+|.|.||+||||+|.|+.|++.+|++.|++.++.+.....+.+ +...+.. +..|+-+.-.........+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~-------lg~~~~~~~~~G~lvpd~iv~~lv~~~l-- 72 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTP-------LGKKAKEYMERGELVPDDLIIALIEEVF-- 72 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCH-------HHHHHHHHHHHTCCCCHHHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcCh-------hhhhHHHHHhcCCcCCHHHHHHHHHHhh--
Confidence 5789999999999999999999999999999987632211110 1111111 11222111111111111111
Q ss_pred ceeeccCceEEEEcccchhh-------Hhhh---hccceEEEEEeceeeeeeeeeecc
Q 002965 143 KVIKGASSGVVIVDGTYALD-------ARLR---SLLDIRVAVVGGVHFSLISKVQYD 190 (862)
Q Consensus 143 ~~~~~~~~~vVIvEG~~l~~-------~~l~---~~~D~~I~Vda~~~~~l~R~i~RD 190 (862)
...+-+|++|.---. ..+. -..|.+|+++++.+..++|...|.
T Consensus 73 -----~~~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~ 125 (206)
T 3sr0_A 73 -----PKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRR 125 (206)
T ss_dssp -----CSSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred -----ccCCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCc
Confidence 111237888853211 1111 236889999999999888877774
No 170
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.73 E-value=3.9e-06 Score=86.67 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=33.5
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002965 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
+|.|.|++||||||+|+.|++.+|..++++|++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~ 37 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFRE 37 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHH
Confidence 688999999999999999999999999999998874
No 171
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.73 E-value=8.2e-06 Score=86.30 Aligned_cols=37 Identities=19% Similarity=0.335 Sum_probs=30.5
Q ss_pred CcEEEeecCCCCCCcchhHhhhccc---eeeeEE--eecccc
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANI---VGCEVV--SLESYF 552 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~---l~~~vi--slDdfy 552 (862)
++.+|.|+|++||||||+|+.|++. .|..++ +.|.+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 4678999999999999999999987 565555 777664
No 172
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.69 E-value=7.3e-06 Score=83.78 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=33.4
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002965 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
.|.|.|++||||||+|+.|++.+|..++++|++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~ 37 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRA 37 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHH
Confidence 478999999999999999999999999999998875
No 173
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.69 E-value=1.3e-05 Score=81.85 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=24.5
Q ss_pred CCcEEEeecCCCCCCcchhHhhhcccee
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
+.+.+|+|.||+||||||+++.|+..++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3466899999999999999999998764
No 174
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.68 E-value=2.2e-05 Score=81.13 Aligned_cols=27 Identities=37% Similarity=0.546 Sum_probs=16.9
Q ss_pred cEEEeecCCCCCCcchhHhhhc-cceee
Q 002965 517 PVIVGIGGPSGSGKTSLAHKMA-NIVGC 543 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~-~~l~~ 543 (862)
..+|||.||+||||||+++.|+ ..+..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC----C
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 4589999999999999999999 76543
No 175
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.67 E-value=4.7e-06 Score=86.07 Aligned_cols=124 Identities=10% Similarity=0.019 Sum_probs=70.4
Q ss_pred cCCCcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCCCcccchhhhcccchhhcCCccccceeee
Q 002965 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFD 592 (862)
Q Consensus 513 ~~~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~P~yd 592 (862)
+..++.||.|.||+||||||.|+.|++.+|...||+.|.++.+-... + ++..+.-.-+.+|+-+.--...
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~-------t---~lg~~~~~~~~~G~lVpde~~~ 94 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSG-------S---PKGKELKAMMERGELVPLEVVL 94 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTC-------C---HHHHHHHHHHHHTCCCCHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcC-------C---chHHHHHHHHhcCCCCCHHHHH
Confidence 34578899999999999999999999999999999999987521110 0 0000111112223222111100
Q ss_pred cccccccCceeeeecccceeEEEcceeccc---Hhh---hhccceeeeeecccchheeheeecc
Q 002965 593 LETGARSGFKELEVSEDCGVIIFEGVYALH---PEI---RKSLDLWIAVVGGVHSHLISRVQRD 650 (862)
Q Consensus 593 ~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~---~~l---~~~~D~~I~v~~~~d~rl~Rri~Rd 650 (862)
....++. ........-+|++|.---. ..+ ....|..|+++++.++.+.|...|.
T Consensus 95 ~lv~~~l----~~~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~ 154 (217)
T 3umf_A 95 ALLKEAM----IKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRA 154 (217)
T ss_dssp HHHHHHH----HHHTTTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC-
T ss_pred HHHHHHH----hhccccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhccc
Confidence 0001111 0001123457888853211 112 1235789999999998888877764
No 176
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.62 E-value=1.8e-05 Score=78.67 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=21.8
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
.+|+|.||||||||||++.|...+
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 478999999999999999998765
No 177
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=97.62 E-value=3.1e-05 Score=91.16 Aligned_cols=41 Identities=22% Similarity=0.253 Sum_probs=34.6
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhcee------eEEEeeccccccc
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG------CTLISMENYRVGV 100 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg------~~vI~~D~~~~~~ 100 (862)
..+++|.|+|.+||||||+|+.|++.|+ +.+++.|.+++.+
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l 440 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHEL 440 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHT
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHh
Confidence 3468899999999999999999999876 4678888887654
No 178
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=97.61 E-value=2e-05 Score=93.22 Aligned_cols=34 Identities=29% Similarity=0.422 Sum_probs=29.6
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhce---eeEEEeec
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVI---GCTLISME 94 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~L---g~~vI~~D 94 (862)
++.+|.|+|.+||||||+|+.|++.| |..++++|
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 56889999999999999999999988 86666654
No 179
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.60 E-value=2.5e-05 Score=77.66 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.8
Q ss_pred EEEeecCCCCCCcchHHHHhhhce
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L 86 (862)
.+|+|+||+|||||||++.|+..+
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 479999999999999999998754
No 180
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.58 E-value=8.8e-06 Score=87.42 Aligned_cols=37 Identities=24% Similarity=0.294 Sum_probs=32.5
Q ss_pred cEEEeecCCCCCCcchhHhhhccce-eeeEEeeccccc
Q 002965 517 PVIVGIGGPSGSGKTSLAHKMANIV-GCEVVSLESYFK 553 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l-~~~vislDdfy~ 553 (862)
|.+|.|+|++||||||+|+.|++.+ +..++++|.+..
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~ 39 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQ 39 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHH
Confidence 4689999999999999999999864 899999996643
No 181
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=97.54 E-value=7.1e-05 Score=76.12 Aligned_cols=145 Identities=15% Similarity=0.127 Sum_probs=79.5
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhcee---eEEEeeccccc-ccCC-CC-CC----------CccchHHHHHhhhhhhc
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG---CTLISMENYRV-GVDE-GN-DL----------DSIDFDALVQNLQDLTE 123 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg---~~vI~~D~~~~-~~~~-~~-~~----------~s~d~~~l~~~L~~l~~ 123 (862)
.++.+|+|+|.+||||+|+|+.|.+.+| +.++++-+--+ .+.. .+ .. +.+ ...+...-..++.
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~-R~~m~~~g~~~R~ 87 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAF-RKDMIRWGEEKRQ 87 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSH-HHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHH-HHHHHHHHHHHHh
Confidence 3568999999999999999999998774 88899877432 1110 00 00 111 1111111111111
Q ss_pred -CCCccccccccccccccccceeeccCceEEEEcccchhh--Hhhhhccc---eEEEEEeceeeeeeeeeecccCCccch
Q 002965 124 -GKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD--ARLRSLLD---IRVAVVGGVHFSLISKVQYDIGDSCSL 197 (862)
Q Consensus 124 -~~~i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~--~~l~~~~D---~~I~Vda~~~~~l~R~i~RD~~~~~~~ 197 (862)
+... +-....+ ....+++||+|.--.. ..++..+. ..|.|.+++++|.+|-..+.... .+.
T Consensus 88 ~d~~~----~~~~~~~--------~~~~~~vII~dvR~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg~~~~~~~-Dd~ 154 (202)
T 3ch4_B 88 ADPGF----FCRKIVE--------GISQPIWLVSDTRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWVFTPGV-DDA 154 (202)
T ss_dssp HCTTT----THHHHSB--------TCCCSEEEECCCCSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTTCCCCTTT-TTS
T ss_pred cCchH----HHHHHHH--------hcCCCcEEEeCCCCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHhhhccccc-ccc
Confidence 1110 0000000 1123489999998876 34555442 35899999999988843222110 111
Q ss_pred hhHHhhhhhhhhcccCCCcccceeecCCccc
Q 002965 198 DSLIDSIFPLFRKHIEPDLHHAQIRINNRFV 228 (862)
Q Consensus 198 e~~~~~~~p~~~k~Iep~~~~ADiII~N~~~ 228 (862)
.-+.-+.+. ..||++|.|+..
T Consensus 155 ---------esE~gL~~~-~~~D~vI~Ndgt 175 (202)
T 3ch4_B 155 ---------ESECGLDNF-GDFDWVIENHGV 175 (202)
T ss_dssp ---------HHHHTTTTC-CCCSEEEEECSC
T ss_pred ---------ccccCCCCC-CcCCEEEEeCCC
Confidence 112233333 689999999853
No 182
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.51 E-value=1.8e-05 Score=79.76 Aligned_cols=41 Identities=32% Similarity=0.484 Sum_probs=37.2
Q ss_pred CCCcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002965 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 514 ~~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
...|.+|+|.|++||||||+|+.|++.++..++++|++.+.
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~ 57 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRR 57 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHH
Confidence 45678999999999999999999999999999999998764
No 183
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.49 E-value=2e-05 Score=78.10 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=33.1
Q ss_pred EEEeecCCCCCCcchHHHHhhhcee-----eEEEeeccccc
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRV 98 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~ 98 (862)
.+|.|+|++||||||+++.|++.+| +.++++|++.+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r 44 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMF 44 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHH
Confidence 5799999999999999999999998 89999998755
No 184
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.49 E-value=2.1e-05 Score=77.98 Aligned_cols=39 Identities=26% Similarity=0.398 Sum_probs=35.3
Q ss_pred CcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
.+.+|+|+|++||||||+++.|++.+|..++++|++.+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~ 41 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRD 41 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHH
Confidence 356899999999999999999999999999999988764
No 185
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.47 E-value=1.9e-05 Score=77.39 Aligned_cols=37 Identities=19% Similarity=0.356 Sum_probs=33.3
Q ss_pred cEEEeecCCCCCCcchhHhhhccceeeeEEeeccccc
Q 002965 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~ 553 (862)
+.+|+|+|++||||||+++.|+..++..+++.|++..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~ 40 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIE 40 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHH
Confidence 3579999999999999999999999999999998765
No 186
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.47 E-value=1.8e-05 Score=77.34 Aligned_cols=37 Identities=22% Similarity=0.425 Sum_probs=34.0
Q ss_pred EEEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
.+|+|+|++||||||+|+.|++.+|..++++|+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~ 39 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQH 39 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHH
Confidence 4689999999999999999999999999999998764
No 187
>2aca_A Putative adenylate cyclase; NESG, VPR19, Q87NV8, structural genomics, PSI, protein structure initiative; 2.25A {Vibrio parahaemolyticus} SCOP: d.63.1.2
Probab=97.47 E-value=0.00023 Score=71.69 Aligned_cols=113 Identities=16% Similarity=0.281 Sum_probs=83.6
Q ss_pred CCcc-CCCCeEEEEEec--ceeeEEeeccccCCCeeeccccceeee-hhhhhhhh-hccceEEEEEEeeeeeeecCeEEE
Q 002965 743 NGQL-TESDCIRVRICE--GRFALLIREPLREGNFIIQPKVDFDIS-ISTVAGLL-NLGYQAVAYIEASAFIYQDGKILI 817 (862)
Q Consensus 743 ~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~f~~~-~~~~~~l~-~lg~~~~~~~~~~~~~~~~~~~~~ 817 (862)
++.+ ..+.+||+|..+ |++.+.+..|..++.. ++.|. ...+..+| +|||+.+..++.....|.-+++.|
T Consensus 52 ~~~L~~~~~aLRiR~~~~~~~~~~t~Kgp~~~~~~------e~~v~d~~~~~~~L~~lgl~~~~~~~k~R~~~~~~~~~v 125 (189)
T 2aca_A 52 QRTLTQQGKSLVLREIQPAGIKLWIVKGPEADRCE------ATNITKLDSAQSMLENMGYEVIQCSKKIRSIFFVGEFHI 125 (189)
T ss_dssp TCHHHHTTCEEEEEEEETTTEEEEEEECSSTTBEE------EEEBSCHHHHHHHHHHTTCEEEEEEEEEEEEEEETTEEE
T ss_pred CcchhhCCeEEEEEEecCCCcEEEEEcCCCcCceE------EEecCCHHHHHHHHHHcCCcEEEEEEEEEEEEEECCEEE
Confidence 4443 446699999875 4577777888777643 23332 22344444 599999998888888888889999
Q ss_pred EeeccCCCCCCceEEe-----cc----CHHHHhhccceeeecCc-ccceehhccC
Q 002965 818 EVDHLQDAPSPYLQIK-----GV----DKEAVAAAGSTLKLDGS-YTTKVMSLAL 862 (862)
Q Consensus 818 ~~~~~~~~~~~~~~~~-----~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 862 (862)
.+|.++.++ .|+.|- |. -++.+.+.+.+|||+.. -+++||+++|
T Consensus 126 ~lD~~~~lg-~f~EiE~e~~~~~~~~~~~~~~~~l~~~lgi~~~~~~~~sY~~ll 179 (189)
T 2aca_A 126 TLDFLDGFG-HFAEFAIMTDDETALARYRERLVALAQQFHLSEADREHRSYKEIL 179 (189)
T ss_dssp EEEEETTTE-EEEEEEEEESCSGGGTTHHHHHHHHHHHTTCCGGGBCCSCTTTSS
T ss_pred EEEcccCCe-eEEEEEEEcCCccchHHHHHHHHHHHHHcCcCccccchhhHHHHH
Confidence 999999998 697774 22 26788999999999865 6899999986
No 188
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=97.46 E-value=2e-05 Score=81.99 Aligned_cols=119 Identities=12% Similarity=0.139 Sum_probs=67.6
Q ss_pred cEEEeecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCCCcccchhhhcccch-hhcCCccccceeeeccc
Q 002965 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNIS-DIRNGRRTKVPIFDLET 595 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~p~t~D~~lL~~~L~-~L~~g~~v~~P~yd~~~ 595 (862)
..-+||.|++||||||+|+.|++.+++.+||+||..+..-.. ++ + +.+.+. -+.+|..+.-.......
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~-------~t---~-lG~~i~~~~~~G~lvpdei~~~ll 76 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKA-------GT---P-LGVEAKTYMDEGKLVPDSLIIGLV 76 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHT-------TC---H-HHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccC-------CC---h-HHHHHHHHHhhccccccHHHHHHH
Confidence 456899999999999999999999999999999998752110 00 0 001111 11122211110000000
Q ss_pred ccccCceeeeecccceeEEEcceeccc---Hhhhh---ccceeeeeecccchheeheeeccc
Q 002965 596 GARSGFKELEVSEDCGVIIFEGVYALH---PEIRK---SLDLWIAVVGGVHSHLISRVQRDK 651 (862)
Q Consensus 596 ~~r~~~~~~~~~~~~~vVIvEG~~~~~---~~l~~---~~D~~I~v~~~~d~rl~Rri~Rd~ 651 (862)
.++. .......-+|++|.---. ..+.. ..|..|++++|.++.+.|...|..
T Consensus 77 ~~~l-----~~~~~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~ 133 (230)
T 3gmt_A 77 KERL-----KEADCANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRT 133 (230)
T ss_dssp HHHH-----HSGGGTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEE
T ss_pred HHHH-----hCcccCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCc
Confidence 1111 000112346778853221 12322 468999999999999988887753
No 189
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.45 E-value=6.5e-05 Score=78.02 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=27.7
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhcee--eEEEee
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG--CTLISM 93 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg--~~vI~~ 93 (862)
....+|+|.|++||||||+++.|++.++ ..++.+
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 3457899999999999999999999875 455544
No 190
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.44 E-value=4.9e-05 Score=74.71 Aligned_cols=39 Identities=23% Similarity=0.217 Sum_probs=34.9
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccceeeeEEeeccccc
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~ 553 (862)
....+|+|+|++||||||+++.|+..+|..+++.|++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~ 44 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHP 44 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccc
Confidence 345789999999999999999999988999999999864
No 191
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.44 E-value=2.7e-05 Score=79.72 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=36.0
Q ss_pred CcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
++.+|.|.|++||||||+|+.|++.++..++++|++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~ 41 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRS 41 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHH
Confidence 467899999999999999999999999999999999874
No 192
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.42 E-value=3.2e-05 Score=76.93 Aligned_cols=39 Identities=21% Similarity=0.402 Sum_probs=34.9
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccceeeeEEeeccccc
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~ 553 (862)
..+.+|.|+|++||||||+++.|++.++..+++.|++..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~ 41 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKE 41 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHH
Confidence 357889999999999999999999999999999998753
No 193
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.38 E-value=1.6e-05 Score=83.95 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=33.9
Q ss_pred EEEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
.+|+|+|++||||||+++.|+..+|..++++|+++..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~ 85 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQ 85 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHH
Confidence 4688999999999999999999999999999998764
No 194
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.37 E-value=3.2e-05 Score=79.65 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=35.6
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
.++.+|.|.|++||||||+|+.|++.++..++++|++++.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~ 44 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRD 44 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHH
Confidence 3567899999999999999999999999999999999875
No 195
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.36 E-value=5.6e-05 Score=79.64 Aligned_cols=35 Identities=37% Similarity=0.478 Sum_probs=32.7
Q ss_pred EEEeecCCCCCCcchhHhhhccceeeeEEeecccc
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYF 552 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy 552 (862)
.+|.|+||+||||||+|+.|++.++..++++|++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~ 36 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQ 36 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHh
Confidence 47899999999999999999999999999999975
No 196
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.30 E-value=3.9e-05 Score=75.57 Aligned_cols=36 Identities=22% Similarity=0.246 Sum_probs=33.3
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002965 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
+|.|+|++||||||+|+.|++.++..+++.|+++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~ 41 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQ 41 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHH
Confidence 588999999999999999999999999999998763
No 197
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.30 E-value=4.8e-05 Score=81.79 Aligned_cols=41 Identities=24% Similarity=0.364 Sum_probs=35.6
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhce--eeEEEeeccccccc
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVI--GCTLISMENYRVGV 100 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~L--g~~vI~~D~~~~~~ 100 (862)
..+.+|.|+|++||||||+|+.|++.+ ++.+||+|.++...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~ 73 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQH 73 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhc
Confidence 456899999999999999999999888 78899999886543
No 198
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.27 E-value=4.4e-05 Score=78.10 Aligned_cols=36 Identities=28% Similarity=0.437 Sum_probs=33.6
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002965 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
+|.|.||+||||+|.|+.|++.+|...||+.|.++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~ 37 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILRE 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHH
Confidence 567889999999999999999999999999999885
No 199
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.24 E-value=0.00011 Score=79.53 Aligned_cols=38 Identities=32% Similarity=0.473 Sum_probs=34.9
Q ss_pred cEEEeecCCCCCCcchhHhhhccceeeeEEeeccc--ccc
Q 002965 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY--FKS 554 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdf--y~~ 554 (862)
+.+|.|+||+||||||||..|++.++..+||.|.+ |+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~ 42 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRG 42 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceee
Confidence 56788999999999999999999999999999998 764
No 200
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.24 E-value=6.7e-05 Score=73.75 Aligned_cols=37 Identities=14% Similarity=0.328 Sum_probs=30.6
Q ss_pred cEEEeecCCCCCCcchhHhhhccceeee--EEeeccccc
Q 002965 517 PVIVGIGGPSGSGKTSLAHKMANIVGCE--VVSLESYFK 553 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~~~--vislDdfy~ 553 (862)
+.+|.|+|++||||||+++.|++.++.. .++.|++..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~ 41 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIE 41 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhh
Confidence 4578899999999999999999988744 456888754
No 201
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.23 E-value=5.4e-05 Score=79.60 Aligned_cols=40 Identities=23% Similarity=0.397 Sum_probs=34.7
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhcee--eEEEeecccccc
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG--CTLISMENYRVG 99 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg--~~vI~~D~~~~~ 99 (862)
..+.+|.|+|++||||||+|+.|++.++ +.+++.|.+...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~ 71 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQ 71 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHh
Confidence 4568999999999999999999999886 678899988653
No 202
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.20 E-value=0.00011 Score=79.06 Aligned_cols=40 Identities=28% Similarity=0.415 Sum_probs=34.9
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccce--eeeEEeecccccc
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIV--GCEVVSLESYFKS 554 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l--~~~vislDdfy~~ 554 (862)
..|.+|.|+|||||||||+|+.|++.+ +..+||.|.|...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~ 72 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQ 72 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHh
Confidence 467899999999999999999999888 6788899888653
No 203
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.20 E-value=5e-05 Score=77.86 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=36.2
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
.++.+|.|.|++||||||+++.|++.++...+++|++++.
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~ 42 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRA 42 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHH
Confidence 3567889999999999999999999999999999999875
No 204
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.19 E-value=0.00011 Score=73.91 Aligned_cols=35 Identities=20% Similarity=0.160 Sum_probs=30.0
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhce-eeEEEeecc
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVI-GCTLISMEN 95 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~L-g~~vI~~D~ 95 (862)
++.+|+|+|++||||||+++.|++.+ |..+++++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 34679999999999999999999988 677777654
No 205
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.15 E-value=0.00011 Score=73.01 Aligned_cols=32 Identities=31% Similarity=0.459 Sum_probs=29.4
Q ss_pred EEeecCCCCCCcchhHhhhccce---eeeEEeecc
Q 002965 519 IVGIGGPSGSGKTSLAHKMANIV---GCEVVSLES 550 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l---~~~vislDd 550 (862)
+|+|+|++||||||+|+.|++.+ |..++++|.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 68999999999999999999988 888898874
No 206
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.15 E-value=0.00023 Score=83.27 Aligned_cols=39 Identities=36% Similarity=0.345 Sum_probs=32.7
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhcee------eEEEeeccccc
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG------CTLISMENYRV 98 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg------~~vI~~D~~~~ 98 (862)
.+..+|+|+|++||||||+++.|+..++ +.+++.|.+..
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~ 411 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR 411 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH
Confidence 3457899999999999999999999874 55688888754
No 207
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.12 E-value=0.00019 Score=77.69 Aligned_cols=40 Identities=38% Similarity=0.625 Sum_probs=35.9
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccceeeeEEeeccc--ccc
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY--FKS 554 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdf--y~~ 554 (862)
..|.+|.|+||+||||||||..|++.++..+||.|++ |+.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~ 49 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKG 49 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTT
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccccccccc
Confidence 4567899999999999999999999999999999985 654
No 208
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.12 E-value=0.00017 Score=78.56 Aligned_cols=36 Identities=36% Similarity=0.671 Sum_probs=33.6
Q ss_pred cEEEeecCCCCCCcchhHhhhccceeeeEEeecccc
Q 002965 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYF 552 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy 552 (862)
+.+|.|+||+||||||+|..|++.++..++++|++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 468999999999999999999999999999999984
No 209
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.09 E-value=0.00022 Score=78.02 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=33.7
Q ss_pred CcEEEeecCCCCCCcchhHhhhccceeeeEEeeccc
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY 551 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdf 551 (862)
.+.+|.|+||+|||||||+..|++.++..+||+|.+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 456888999999999999999999999999999988
No 210
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.07 E-value=0.00012 Score=72.55 Aligned_cols=36 Identities=19% Similarity=0.382 Sum_probs=31.8
Q ss_pred EEEeecCCCCCCcchhHhhhcccee-----eeEEeeccccc
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFK 553 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdfy~ 553 (862)
.+|.|.|++||||||+|+.|++.++ +.+++.|++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~ 42 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFML 42 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHH
Confidence 4789999999999999999999887 77888888764
No 211
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.07 E-value=0.00017 Score=80.74 Aligned_cols=38 Identities=29% Similarity=0.515 Sum_probs=34.8
Q ss_pred cEEEeecCCCCCCcchhHhhhccceeeeEEeecc--cccc
Q 002965 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES--YFKS 554 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDd--fy~~ 554 (862)
+.+|+|+||+||||||||..|++.++..+||+|+ +|+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~ 41 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKD 41 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSS
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecc
Confidence 4688999999999999999999999999999999 6775
No 212
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.07 E-value=0.00012 Score=75.80 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=36.0
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
..+..|.|.|++||||||+|+.|++.++..++++|++.+.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~ 53 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRA 53 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHH
Confidence 3567899999999999999999999999999999998764
No 213
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.03 E-value=0.00025 Score=73.55 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=21.5
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhcee
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG 87 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg 87 (862)
.+..+|.|.|++||||||+++.|++.|+
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999999874
No 214
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.02 E-value=0.00037 Score=81.10 Aligned_cols=41 Identities=20% Similarity=0.345 Sum_probs=34.2
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhcee-----eEEEeeccccccc
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGV 100 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~ 100 (862)
..+.+|.++|.+||||||+|+.|++.++ +.+++.|++....
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~ 78 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREA 78 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHh
Confidence 4567899999999999999999998774 5678999976543
No 215
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.98 E-value=0.00021 Score=71.86 Aligned_cols=22 Identities=45% Similarity=0.741 Sum_probs=19.7
Q ss_pred EeecCCCCCCcchHHHHhhhce
Q 002965 65 VGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~L 86 (862)
|.|+||||||||||++.|.+.+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7799999999999999997654
No 216
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.98 E-value=0.00027 Score=71.28 Aligned_cols=41 Identities=22% Similarity=0.320 Sum_probs=32.6
Q ss_pred cCCCcEEEeecCCCCCCcchhHhhhccce---eee--EEeeccccc
Q 002965 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV---GCE--VVSLESYFK 553 (862)
Q Consensus 513 ~~~~p~iIgI~G~sGSGKTTla~~L~~~l---~~~--vislDdfy~ 553 (862)
....+.+|+|.|++||||||+++.|+..+ |.. .++.|++..
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRH 66 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhh
Confidence 34567899999999999999999999988 433 666666643
No 217
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.96 E-value=0.00022 Score=70.97 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=27.6
Q ss_pred EEeecCCCCCCcchhHhhhccce---eeeEEeecc
Q 002965 519 IVGIGGPSGSGKTSLAHKMANIV---GCEVVSLES 550 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l---~~~vislDd 550 (862)
+|+|+|++||||||+++.|++.+ |..++.++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 69999999999999999999988 877776654
No 218
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.91 E-value=0.00029 Score=70.68 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=29.6
Q ss_pred CcEEEeecCCCCCCcchhHhhhccce-eeeEEeecc
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIV-GCEVVSLES 550 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l-~~~vislDd 550 (862)
++.+|+|+|++||||||+++.|++.+ |..+++++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 35689999999999999999999988 566776653
No 219
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.89 E-value=0.00029 Score=74.00 Aligned_cols=40 Identities=23% Similarity=0.400 Sum_probs=33.4
Q ss_pred CCCcEEEeecCCCCCCcchhHhhhcccee--eeEEeeccccc
Q 002965 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG--CEVVSLESYFK 553 (862)
Q Consensus 514 ~~~p~iIgI~G~sGSGKTTla~~L~~~l~--~~vislDdfy~ 553 (862)
...|.+|.|+|++||||||+|+.|+..++ +.+++.|.+..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~ 70 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRS 70 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHH
Confidence 34678999999999999999999999886 56677777643
No 220
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.85 E-value=0.00028 Score=82.56 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=31.5
Q ss_pred CCcEEEeecCCCCCCcchhHhhhcccee-----eeEEeeccc
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESY 551 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdf 551 (862)
..+.+|.++|++||||||+|+.|++.++ +.+++.|.+
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 4578999999999999999999999876 467777765
No 221
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.85 E-value=0.0002 Score=74.66 Aligned_cols=38 Identities=26% Similarity=0.460 Sum_probs=33.6
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhceeeEEEeeccccc
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~ 98 (862)
++.+|+|.|++||||||+++.|++.+|...++.|++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~ 63 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLR 63 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHH
Confidence 35789999999999999999999999988888888644
No 222
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.84 E-value=0.00035 Score=68.93 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=29.6
Q ss_pred CcEEEeecCCCCCCcchhHhhhccce---eeeEEeecc
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIV---GCEVVSLES 550 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l---~~~vislDd 550 (862)
+..+|+|+|++||||||+++.|+..+ |..++.+|.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 45789999999999999999999987 766776663
No 223
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.84 E-value=0.00027 Score=70.19 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=30.7
Q ss_pred eEEEeecCCCCCCcchHHHHhhhcee--eEEEeeccccc
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVIG--CTLISMENYRV 98 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg--~~vI~~D~~~~ 98 (862)
..+|+|.|++||||||+++.|+..++ ...++.|++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~ 47 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWG 47 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhh
Confidence 46799999999999999999998764 45778888744
No 224
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.81 E-value=0.0004 Score=78.56 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=34.1
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccceeeeEEeeccc
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY 551 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdf 551 (862)
..|.+|.|+|++||||||+|+.|++.+++.+++.|++
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 292 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL 292 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH
Confidence 4578899999999999999999999999999999987
No 225
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.79 E-value=0.00032 Score=69.01 Aligned_cols=31 Identities=35% Similarity=0.459 Sum_probs=23.4
Q ss_pred CcEEEeecCCCCCCcchhHhhhccceeeeEE
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVV 546 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~~~vi 546 (862)
++.+|.|+|++||||||+|+.|++.++..++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 4678999999999999999999999987766
No 226
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=96.78 E-value=0.00038 Score=72.89 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=30.7
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeecc
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~ 95 (862)
|++|||+|++||||||+|+.|++.+|+.+++..+
T Consensus 1 m~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~ 34 (241)
T 1dek_A 1 MKLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAG 34 (241)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSCEEECCTTH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCeEEecCh
Confidence 4689999999999999999999988999987665
No 227
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.77 E-value=0.00033 Score=70.46 Aligned_cols=41 Identities=7% Similarity=0.028 Sum_probs=27.6
Q ss_pred cceeEEEcceecccHhhhhccc---eeeeeecccchheeheeec
Q 002965 609 DCGVIIFEGVYALHPEIRKSLD---LWIAVVGGVHSHLISRVQR 649 (862)
Q Consensus 609 ~~~vVIvEG~~~~~~~l~~~~D---~~I~v~~~~d~rl~Rri~R 649 (862)
....+|+++-..+...++..+. ..||+..|....|.+|+..
T Consensus 91 ~g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~ 134 (186)
T 1ex7_A 91 SGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEG 134 (186)
T ss_dssp HTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHH
T ss_pred CCCEEEecCCHHHHHHHHHhcccCceEEEEeCCCHHHHHHHHHh
Confidence 3567888876666666666443 5688888777777776654
No 228
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.77 E-value=0.00025 Score=73.95 Aligned_cols=39 Identities=26% Similarity=0.427 Sum_probs=34.0
Q ss_pred CcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
+|.+|+|.||+||||||+++.|++.+|...++.|++...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~ 64 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRE 64 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHH
Confidence 467999999999999999999998888777888877654
No 229
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.75 E-value=0.00052 Score=68.06 Aligned_cols=39 Identities=26% Similarity=0.327 Sum_probs=30.8
Q ss_pred CCcEEEeecCCCCCCcchhHhhhcccee--eeEEeeccccc
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG--CEVVSLESYFK 553 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~--~~vislDdfy~ 553 (862)
....+|+|.||+||||||+++.|+..++ ...++.|++..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~ 47 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWG 47 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhh
Confidence 3457899999999999999999998764 34666677643
No 230
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.74 E-value=0.00042 Score=68.88 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=31.7
Q ss_pred EEEeecCCCCCCcchHHHHhhhcee-eEEEeecccccc
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVIG-CTLISMENYRVG 99 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg-~~vI~~D~~~~~ 99 (862)
.+|+|+|++||||||+++.|+..++ ...++.|++...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~ 40 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHM 40 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTT
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhh
Confidence 4799999999999999999998765 478999988653
No 231
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.73 E-value=0.00023 Score=71.95 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=28.7
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccceeeeEEeecc
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES 550 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDd 550 (862)
.++.+|+|+|++||||||+++.|++.++...++.|.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~ 42 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL 42 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 356789999999999999999999987644444433
No 232
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.58 E-value=0.00083 Score=68.22 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=31.8
Q ss_pred CCCcEEEeecCCCCCCcchhHhhhcccee------eeEEeecccc
Q 002965 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG------CEVVSLESYF 552 (862)
Q Consensus 514 ~~~p~iIgI~G~sGSGKTTla~~L~~~l~------~~vislDdfy 552 (862)
...+.+|.|.|++||||||+++.|+..++ +.+++.|++.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 34567899999999999999999999886 6666666654
No 233
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.58 E-value=0.00055 Score=68.02 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=30.1
Q ss_pred EEEeecCCCCCCcchhHhhhcccee-eeEEeeccccc
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIVG-CEVVSLESYFK 553 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~-~~vislDdfy~ 553 (862)
.+|+|.||+||||||+++.|+..++ ...++.|++..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~ 39 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINH 39 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhh
Confidence 4789999999999999999987664 46778888764
No 234
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.45 E-value=0.0009 Score=66.34 Aligned_cols=37 Identities=30% Similarity=0.459 Sum_probs=30.4
Q ss_pred CCcEEEeecCCCCCCcchhHhhhcccee-----eeEEeeccc
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESY 551 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdf 551 (862)
..+.+|.|.|++||||||+++.|+..++ +.+++.|.+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 3568899999999999999999998875 456666655
No 235
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.45 E-value=0.00087 Score=67.29 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=24.6
Q ss_pred cEEEeecCCCCCCcchhHhhhccceee
Q 002965 517 PVIVGIGGPSGSGKTSLAHKMANIVGC 543 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~~ 543 (862)
+.+|.|.|++||||||+|+.|++.++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 578999999999999999999998764
No 236
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.43 E-value=0.00086 Score=67.87 Aligned_cols=30 Identities=30% Similarity=0.421 Sum_probs=24.8
Q ss_pred EEeecCCCCCCcchHHHHhhhce---eeEEEee
Q 002965 64 TVGIGGPSGSGKTSLAEKLASVI---GCTLISM 93 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~L---g~~vI~~ 93 (862)
.|.|-|+.||||||.++.|++.| |..++.+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 58899999999999999999877 4555544
No 237
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.22 E-value=0.0021 Score=65.08 Aligned_cols=38 Identities=29% Similarity=0.239 Sum_probs=31.9
Q ss_pred EEEeecCCCCCCcchHHHHhhhceeeEEEeeccc--ccccC
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVD 101 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~ 101 (862)
..|.|+|++||||||+|..|++..+ .+|+.|.. |+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v~~~~~ 74 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH-RLIADDRVDVYQQDE 74 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEEEECST
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhheeecCC
Confidence 4589999999999999999999766 89999985 55443
No 238
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.12 E-value=0.0019 Score=74.77 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=35.6
Q ss_pred hhHHHHHHHH-hcCCeEEEeecCCCCCCcchHHHHhhhceee-------EEEeecc
Q 002965 48 LVKSIQELRE-KKGGIVTVGIGGPSGSGKTSLAEKLASVIGC-------TLISMEN 95 (862)
Q Consensus 48 l~~~i~~~~~-~~~~~~iIgItG~sGSGKSTlA~~La~~Lg~-------~vI~~D~ 95 (862)
+.+.+..... +....++|.++|.+||||||+|+.|++.|+. .+++.|.
T Consensus 380 V~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 380 VVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp HHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred hHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 4444444432 2234578999999999999999999999874 5777776
No 239
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.01 E-value=0.0023 Score=67.31 Aligned_cols=33 Identities=18% Similarity=0.355 Sum_probs=28.4
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhce-eeEEEe
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVI-GCTLIS 92 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~L-g~~vI~ 92 (862)
.++.+|+|.|++||||||+++.|++.+ ++.++.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~ 55 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVP 55 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEEC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCCCEEEe
Confidence 456889999999999999999999998 666664
No 240
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.92 E-value=0.0022 Score=62.98 Aligned_cols=34 Identities=35% Similarity=0.382 Sum_probs=26.4
Q ss_pred CcEEEeecCCCCCCcchhHhhhccceeeeEEeeccc
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY 551 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdf 551 (862)
..-+++|.||+|||||||++.+.. +..+++.|.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~--~~~~~~~d~~ 41 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK--PTEVISSDFC 41 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC--GGGEEEHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc--CCeEEccHHH
Confidence 456899999999999999998653 4556666643
No 241
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=95.92 E-value=0.0024 Score=66.82 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=31.1
Q ss_pred EEEeecCCCCCCcchhHhhhccceeeeEEeeccccc
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~ 553 (862)
.+|||+|+.||||||+|+.|++.+|+.++++.+-.+
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~ 37 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIK 37 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHH
Confidence 589999999999999999999988988877665443
No 242
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.88 E-value=0.0038 Score=63.26 Aligned_cols=36 Identities=22% Similarity=0.162 Sum_probs=31.1
Q ss_pred cEEEeecCCCCCCcchhHhhhccceeeeEEeeccccc
Q 002965 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~ 553 (862)
...|.|+||+||||||+|..|++... .+|+.|....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v 69 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDV 69 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhhe
Confidence 45688999999999999999999876 8899887644
No 243
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.86 E-value=0.0021 Score=63.23 Aligned_cols=33 Identities=33% Similarity=0.362 Sum_probs=27.2
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeeccc
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY 96 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~ 96 (862)
.-+++|.|++||||||+++.+. .|..+++.|.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d~~ 41 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF--KPTEVISSDFC 41 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS--CGGGEEEHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHc--cCCeEEccHHH
Confidence 4579999999999999999875 35677787765
No 244
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.85 E-value=0.0036 Score=65.75 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=28.4
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccce-eeeEEe
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIV-GCEVVS 547 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l-~~~vis 547 (862)
.++.+|.|.|+.||||||+++.|++.+ +..+++
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~ 55 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVP 55 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEEC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCCCEEEe
Confidence 467899999999999999999999998 566664
No 245
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.70 E-value=0.0022 Score=63.75 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=22.2
Q ss_pred EEeecCCCCCCcchhHhhhcccee
Q 002965 519 IVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
.++|.||+|||||||.+.|+..++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998876
No 246
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.70 E-value=0.0033 Score=62.13 Aligned_cols=34 Identities=24% Similarity=0.168 Sum_probs=26.5
Q ss_pred CcEEEeecCCCCCCcchhHhhhccce-----eeeEEeec
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLE 549 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l-----~~~vislD 549 (862)
.+.+|+|+|++||||||++..|...| .+.++..|
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~ 41 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 41 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence 35689999999999999999998765 24555544
No 247
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.61 E-value=0.0047 Score=66.36 Aligned_cols=35 Identities=34% Similarity=0.405 Sum_probs=28.8
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceeeEEEeec
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D 94 (862)
..+..|.|.|++|+||||+|+.++..++..++..+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~ 81 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 81 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEE
Confidence 34557899999999999999999998887665544
No 248
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.59 E-value=0.0041 Score=71.92 Aligned_cols=52 Identities=8% Similarity=0.105 Sum_probs=37.0
Q ss_pred eeCCCccccCccchhhHHHHHHHHh-cCCCcEEEeecCCCCCCcchhHhhhccceee
Q 002965 488 VPMPDSYDFDRGLLLSVQAIQALLE-NKGLPVIVGIGGPSGSGKTSLAHKMANIVGC 543 (862)
Q Consensus 488 ~~~~~~~~~~e~~~~~~~~i~~~~~-~~~~p~iIgI~G~sGSGKTTla~~L~~~l~~ 543 (862)
..+|+++...|. .+.+++... +.....+|.++|.+||||||+|+.|++.|+.
T Consensus 369 ~~~P~~f~rpeV----~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 369 GEIPEWFSYPEV----VKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCCCTTTSCHHH----HHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred CCCCccccChhh----HHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 456778776655 223333331 2235688999999999999999999999874
No 249
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.57 E-value=0.0039 Score=61.57 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=27.1
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhce---e--eEEEeecc
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMEN 95 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~L---g--~~vI~~D~ 95 (862)
.+.+|+|+|++||||||++..|+..| | +.++..|.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 46789999999999999999998765 2 45565543
No 250
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.53 E-value=0.0019 Score=65.04 Aligned_cols=24 Identities=38% Similarity=0.641 Sum_probs=22.2
Q ss_pred EEeecCCCCCCcchHHHHhhhcee
Q 002965 64 TVGIGGPSGSGKTSLAEKLASVIG 87 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg 87 (862)
+|+|.|++||||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 699999999999999999998774
No 251
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.53 E-value=0.0044 Score=64.19 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=25.5
Q ss_pred eEEEeecCCCCCCcchHHHHhhhce-eeEE
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVI-GCTL 90 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L-g~~v 90 (862)
+.+|+|.|++||||||+++.|++.+ ++.+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~~~~ 31 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHV 31 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcCCCee
Confidence 5789999999999999999999988 5543
No 252
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.49 E-value=0.0037 Score=63.20 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=22.8
Q ss_pred cEEEeecCCCCCCcchhHhhhcccee
Q 002965 517 PVIVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
--+++|.||+|||||||++.|+..+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34799999999999999999988664
No 253
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.45 E-value=0.002 Score=64.86 Aligned_cols=24 Identities=29% Similarity=0.612 Sum_probs=22.2
Q ss_pred EEeecCCCCCCcchhHhhhcccee
Q 002965 519 IVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
+|+|.|++||||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999998774
No 254
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.43 E-value=0.012 Score=63.34 Aligned_cols=47 Identities=17% Similarity=0.360 Sum_probs=36.7
Q ss_pred hHHHHHHHHhcCCCcEEEeecCCCCCCcchhHhhhccceeeeEEeec
Q 002965 503 SVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (862)
Q Consensus 503 ~~~~i~~~~~~~~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislD 549 (862)
.++.++........|.++.+.||+|+||||+++.+++.++..++.++
T Consensus 34 ~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~ 80 (324)
T 3u61_B 34 DKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVN 80 (324)
T ss_dssp HHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 45556666666666778889999999999999999998886666554
No 255
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.40 E-value=0.0041 Score=63.98 Aligned_cols=29 Identities=28% Similarity=0.321 Sum_probs=23.1
Q ss_pred hcCCeEEEeecCCCCCCcchHHHHhhhce
Q 002965 58 KKGGIVTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 58 ~~~~~~iIgItG~sGSGKSTlA~~La~~L 86 (862)
..+.-.+++|.||+|||||||.+.|+..+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34555689999999999999999998755
No 256
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.40 E-value=0.0038 Score=62.06 Aligned_cols=25 Identities=36% Similarity=0.583 Sum_probs=22.6
Q ss_pred EEeecCCCCCCcchHHHHhhhceee
Q 002965 64 TVGIGGPSGSGKTSLAEKLASVIGC 88 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~ 88 (862)
.++|.|++||||||+++.|+..+++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999987763
No 257
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.36 E-value=0.0062 Score=64.30 Aligned_cols=34 Identities=32% Similarity=0.430 Sum_probs=27.6
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceeeEEEee
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISM 93 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~ 93 (862)
..+.-|.|.|++|+||||+|+.++..++..++..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v 82 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIRV 82 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 3445588999999999999999999888665443
No 258
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.33 E-value=0.0049 Score=71.61 Aligned_cols=39 Identities=21% Similarity=0.428 Sum_probs=32.8
Q ss_pred CCcEEEeecCCCCCCcchhHhhhcccee-----eeEEeeccccc
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFK 553 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdfy~ 553 (862)
..+.+|.+.|.+||||||+|+.|++.++ +.+++.|++-.
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~ 76 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRR 76 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHH
Confidence 4578899999999999999999998874 56788898543
No 259
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.31 E-value=0.0064 Score=63.11 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=25.9
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEe
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLIS 92 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~ 92 (862)
+.-|.|.|++|+||||+|+.+++.++..++.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~ 69 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQVPFLA 69 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 4457899999999999999999988865543
No 260
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.31 E-value=0.0059 Score=63.64 Aligned_cols=32 Identities=31% Similarity=0.436 Sum_probs=26.2
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEee
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISM 93 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~ 93 (862)
+.-|.|.|++|+||||+|+.++..++.+++..
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 33488999999999999999999887655444
No 261
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.31 E-value=0.005 Score=62.24 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=22.3
Q ss_pred EEEeecCCCCCCcchHHHHhhhcee
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVIG 87 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg 87 (862)
-++||.|++||||||+++.|+..+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4799999999999999999987663
No 262
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.30 E-value=0.0039 Score=62.77 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=21.1
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
.+++|.||+|||||||.+.|...+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468899999999999999998754
No 263
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.29 E-value=0.0057 Score=63.31 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=25.5
Q ss_pred CcEEEeecCCCCCCcchhHhhhccce-eee
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIV-GCE 544 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l-~~~ 544 (862)
+|.+|.|.|+.||||||+++.|++.+ ++.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~~~ 30 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWH 30 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCTTSE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcCCCe
Confidence 36789999999999999999999988 443
No 264
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.28 E-value=0.0037 Score=63.00 Aligned_cols=24 Identities=42% Similarity=0.602 Sum_probs=21.3
Q ss_pred EEEeecCCCCCCcchHHHHhhhce
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L 86 (862)
.+++|.||+||||||+.+.|...+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 469999999999999999998743
No 265
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.26 E-value=0.0045 Score=66.39 Aligned_cols=36 Identities=25% Similarity=0.431 Sum_probs=30.1
Q ss_pred CCCcEEEeecCCCCCCcchhHhhhccceeeeEEeec
Q 002965 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (862)
Q Consensus 514 ~~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislD 549 (862)
.+.|..|.+.||+|+|||++|+.+++.++..++.++
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~ 68 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMS 68 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 356788999999999999999999999986655543
No 266
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.22 E-value=0.0051 Score=63.24 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.2
Q ss_pred CcEEEeecCCCCCCcchhHhhhcccee
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
.-.+++|.||||||||||.+.|...+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 446889999999999999999987654
No 267
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.21 E-value=0.0043 Score=63.49 Aligned_cols=25 Identities=40% Similarity=0.484 Sum_probs=22.2
Q ss_pred cEEEeecCCCCCCcchhHhhhccce
Q 002965 517 PVIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
..+++|.||+|||||||++.|...+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4578999999999999999998765
No 268
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.20 E-value=0.008 Score=65.07 Aligned_cols=37 Identities=22% Similarity=0.446 Sum_probs=30.2
Q ss_pred CCcEEEeecCCCCCCcchhHhhhcccee-----eeEEeeccc
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESY 551 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdf 551 (862)
+.+.+|+|.|++||||||++..|+..+. +.++..|-|
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 143 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence 3578999999999999999999998762 556677654
No 269
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.20 E-value=0.014 Score=62.57 Aligned_cols=35 Identities=34% Similarity=0.389 Sum_probs=29.3
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccceeeeEEeec
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislD 549 (862)
..+..|.|.||+|+||||+|+.|+..++..++..+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~ 81 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 81 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEE
Confidence 45667889999999999999999998887666554
No 270
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.16 E-value=0.0056 Score=62.01 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=23.0
Q ss_pred CcEEEeecCCCCCCcchhHhhhcccee
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
...+|+|+||||||||||++.|...+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 346788999999999999999987653
No 271
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.13 E-value=0.0087 Score=65.39 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=29.8
Q ss_pred CCCcEEEeecCCCCCCcchhHhhhcccee-----eeEEeeccc
Q 002965 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESY 551 (862)
Q Consensus 514 ~~~p~iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdf 551 (862)
.+++.+|+|.||+||||||+++.|+..+. +.+...|-|
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~ 168 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTF 168 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccc
Confidence 35689999999999999999999998662 445555543
No 272
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.09 E-value=0.01 Score=57.07 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.0
Q ss_pred eEEEeecCCCCCCcchHHHHhhhce
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L 86 (862)
...++|.|++||||||+++.++..+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999998865
No 273
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.09 E-value=0.0054 Score=62.79 Aligned_cols=25 Identities=44% Similarity=0.615 Sum_probs=22.2
Q ss_pred eEEEeecCCCCCCcchHHHHhhhce
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L 86 (862)
..+++|.||+||||||+++.|+..+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3469999999999999999998765
No 274
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.05 E-value=0.0069 Score=62.92 Aligned_cols=25 Identities=36% Similarity=0.562 Sum_probs=22.3
Q ss_pred EEEeecCCCCCCcchhHhhhcccee
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
-++||.||+|||||||.+.|+..+.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4799999999999999999997663
No 275
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.02 E-value=0.0076 Score=65.16 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=23.6
Q ss_pred CcEEEeecCCCCCCcchhHhhhccce
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
++-+|+|.||+||||||+++.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 56799999999999999999999765
No 276
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.01 E-value=0.0098 Score=64.34 Aligned_cols=38 Identities=29% Similarity=0.485 Sum_probs=30.9
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhce---e--eEEEeecccc
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYR 97 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~L---g--~~vI~~D~~~ 97 (862)
.++.+|+|+|++||||||++..|+..+ | +.++++|-+.
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 346799999999999999999999765 2 6677887653
No 277
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.01 E-value=0.0064 Score=59.27 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=23.7
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccce
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
..--+++|.||+|||||||.+.|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345689999999999999999999866
No 278
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.00 E-value=0.01 Score=58.21 Aligned_cols=39 Identities=23% Similarity=0.265 Sum_probs=28.0
Q ss_pred hHHHHHHHHhcCC--CcEEEeecCCCCCCcchhHhhhccce
Q 002965 503 SVQAIQALLENKG--LPVIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 503 ~~~~i~~~~~~~~--~p~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
++..++....+.. ....++|.||+|||||||++.++..+
T Consensus 22 ~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 22 ALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp HHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444444444322 34678999999999999999998765
No 279
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.00 E-value=0.011 Score=69.76 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=30.9
Q ss_pred CcEEEeecCCCCCCcchhHhhhccce---eeeEEeecc
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIV---GCEVVSLES 550 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l---~~~vislDd 550 (862)
++.+|.|+|.+||||||+|+.|++.| |..++.+|.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDg 88 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 88 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEech
Confidence 67899999999999999999999998 777777763
No 280
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.97 E-value=0.0079 Score=63.92 Aligned_cols=30 Identities=43% Similarity=0.655 Sum_probs=25.8
Q ss_pred EeecCCCCCCcchhHhhhccceeeeEEeec
Q 002965 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (862)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~~~vislD 549 (862)
|+|.||+|||||||++.|+..++...+..+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i~i~ 76 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFISVK 76 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEEEEE
Confidence 899999999999999999998876555554
No 281
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.95 E-value=0.01 Score=67.27 Aligned_cols=37 Identities=38% Similarity=0.528 Sum_probs=31.2
Q ss_pred CcEEEeecCCCCCCcchhHhhhccce-----eeeEEeecccc
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYF 552 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l-----~~~vislDdfy 552 (862)
.|.+|+++|++||||||++..|+..+ .+.+++.|-|-
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR 137 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 58999999999999999999999766 26678888653
No 282
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.95 E-value=0.0069 Score=61.34 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=22.7
Q ss_pred eEEEeecCCCCCCcchHHHHhhhcee
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVIG 87 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg 87 (862)
..+|+|.||+|||||||++.|.+.+.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45799999999999999999987654
No 283
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.90 E-value=0.011 Score=62.92 Aligned_cols=32 Identities=31% Similarity=0.463 Sum_probs=27.1
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEee
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISM 93 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~ 93 (862)
+.-|.|.|++|+||||+|+.++..++..++..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i 85 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSATFLNI 85 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTCEEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 45789999999999999999999888665443
No 284
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.87 E-value=0.011 Score=56.89 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=22.0
Q ss_pred cEEEeecCCCCCCcchhHhhhccce
Q 002965 517 PVIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
...++|.||+|||||||++.++..+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468889999999999999999866
No 285
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.86 E-value=0.0077 Score=70.79 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=31.7
Q ss_pred CCcEEEeecCCCCCCcchhHhhhcccee------eeEEeeccccc
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG------CEVVSLESYFK 553 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~------~~vislDdfy~ 553 (862)
..+.+|.|+|++||||||+|+.|++.|+ +.+++.|.+..
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~ 438 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRH 438 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHH
Confidence 4578999999999999999999999876 35666666544
No 286
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.85 E-value=0.016 Score=65.54 Aligned_cols=59 Identities=24% Similarity=0.344 Sum_probs=42.5
Q ss_pred eeEEecc--ceehhhHHHHHHHH----------h--cCCeEEEeecCCCCCCcchHHHHhhhceeeEEEeecc
Q 002965 37 VHASFDH--GYYLLVKSIQELRE----------K--KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (862)
Q Consensus 37 ~~~s~~~--~y~~l~~~i~~~~~----------~--~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~ 95 (862)
..++|+| ++....+.+..... . -+.+.=|.+.||+|+|||++|+++|..+|+.++..+.
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~ 239 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNG 239 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEG
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 3578888 66666655543321 1 1345569999999999999999999999987765543
No 287
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.83 E-value=0.015 Score=64.85 Aligned_cols=40 Identities=25% Similarity=0.327 Sum_probs=30.7
Q ss_pred HHHHhcCCCcEEEeecCCCCCCcchhHhhhccceeeeEEe
Q 002965 508 QALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVS 547 (862)
Q Consensus 508 ~~~~~~~~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vis 547 (862)
..+.-.-+...+|+|.||+||||||+++.|+..++..+++
T Consensus 160 ~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 160 KCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp HHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred HhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 3333344566799999999999999999999877655554
No 288
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.80 E-value=0.009 Score=61.74 Aligned_cols=28 Identities=25% Similarity=0.526 Sum_probs=25.1
Q ss_pred CCcEEEeecCCCCCCcchhHhhhcccee
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
....+|.|.|++||||||+++.|++.++
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3567899999999999999999999875
No 289
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.78 E-value=0.011 Score=67.10 Aligned_cols=38 Identities=32% Similarity=0.408 Sum_probs=32.0
Q ss_pred CcEEEeecCCCCCCcchhHhhhccce-----eeeEEeeccccc
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYFK 553 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l-----~~~vislDdfy~ 553 (862)
+|.+|.++|++||||||++..|+..+ .+.++++|-|..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~ 141 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP 141 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 58999999999999999999999765 367888886643
No 290
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.75 E-value=0.0083 Score=59.83 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.2
Q ss_pred EeecCCCCCCcchhHhhhccceeeeE
Q 002965 520 VGIGGPSGSGKTSLAHKMANIVGCEV 545 (862)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~~~v 545 (862)
|.|+|++||||||+|..|+.. +..+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~ 26 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQV 26 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSE
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCe
Confidence 678999999999999999876 6443
No 291
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.74 E-value=0.0066 Score=65.07 Aligned_cols=35 Identities=29% Similarity=0.328 Sum_probs=28.8
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceeeEEEeec
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D 94 (862)
+.|..+.+.||+|+|||++|+.+|+.+|..++..+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~ 68 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMS 68 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 45667889999999999999999999986654443
No 292
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.74 E-value=0.021 Score=62.95 Aligned_cols=43 Identities=26% Similarity=0.427 Sum_probs=33.1
Q ss_pred HHHHHhcCCCcEEEeecCCCCCCcchhHhhhccce-----eeeEEeec
Q 002965 507 IQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLE 549 (862)
Q Consensus 507 i~~~~~~~~~p~iIgI~G~sGSGKTTla~~L~~~l-----~~~vislD 549 (862)
++.+....+.+.+|+|+|++|+||||++..|+..+ .+.+++.|
T Consensus 69 ~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 69 LLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp HHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred HHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 33334445678999999999999999999998665 35677766
No 293
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.74 E-value=0.0092 Score=61.98 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=21.5
Q ss_pred EEEeecCCCCCCcchHHHHhhhce
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L 86 (862)
-++||.|++|||||||.+.|+..+
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 369999999999999999998755
No 294
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.71 E-value=0.0084 Score=61.76 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=21.8
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-++||.||+|||||||.+.|+..+
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999999765
No 295
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.70 E-value=0.024 Score=54.86 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=21.9
Q ss_pred CcEEEeecCCCCCCcchhHhhhccce
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
.+..|.|.||+|+||||+++.+++.+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34456789999999999999999876
No 296
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.69 E-value=0.019 Score=63.27 Aligned_cols=38 Identities=26% Similarity=0.483 Sum_probs=30.8
Q ss_pred hcCCeEEEeecCCCCCCcchHHHHhhhce-----eeEEEeecc
Q 002965 58 KKGGIVTVGIGGPSGSGKTSLAEKLASVI-----GCTLISMEN 95 (862)
Q Consensus 58 ~~~~~~iIgItG~sGSGKSTlA~~La~~L-----g~~vI~~D~ 95 (862)
..++..+|+|+|.+|+||||++..|+..+ .+.+++.|-
T Consensus 75 ~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp 117 (355)
T 3p32_A 75 DSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP 117 (355)
T ss_dssp GCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred hcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence 34667899999999999999999998654 267788875
No 297
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.68 E-value=0.012 Score=63.65 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=23.8
Q ss_pred CcEEEeecCCCCCCcchhHhhhccce
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
.+-+|+|.||+||||||+++.|+..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999999876
No 298
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.67 E-value=0.0097 Score=63.37 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.9
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-++||.||+|||||||.+.|+..+
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 478999999999999999999866
No 299
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.66 E-value=0.012 Score=62.51 Aligned_cols=30 Identities=43% Similarity=0.656 Sum_probs=25.5
Q ss_pred EeecCCCCCCcchHHHHhhhceeeEEEeec
Q 002965 65 VGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (862)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~vI~~D 94 (862)
|+|.||+||||||+++.++..++...+..+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i~i~ 76 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFISVK 76 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEEEEE
Confidence 999999999999999999998876554443
No 300
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.64 E-value=0.02 Score=59.59 Aligned_cols=33 Identities=33% Similarity=0.455 Sum_probs=26.4
Q ss_pred cEEEeecCCCCCCcchhHhhhccceeeeEEeec
Q 002965 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~~~vislD 549 (862)
|.-|.|.||+|+||||+|+.|+..++..++.++
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~ 77 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTIS 77 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEEC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 445789999999999999999998875554443
No 301
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.62 E-value=0.011 Score=60.14 Aligned_cols=23 Identities=52% Similarity=0.427 Sum_probs=20.8
Q ss_pred EEEeecCCCCCCcchhHhhhccc
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANI 540 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~ 540 (862)
-++||.||+|||||||.+.|+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999999865
No 302
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.62 E-value=0.01 Score=57.89 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=23.6
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhce
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~L 86 (862)
+.--+++|.|+.|||||||.+.|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 444689999999999999999998865
No 303
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.60 E-value=0.01 Score=62.82 Aligned_cols=24 Identities=33% Similarity=0.636 Sum_probs=21.9
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-++||.||+|||||||.+.|+..+
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 479999999999999999999866
No 304
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.59 E-value=0.02 Score=57.47 Aligned_cols=38 Identities=26% Similarity=0.249 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCcEEEeecCCCCCCcchhHhhhcccee
Q 002965 505 QAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 505 ~~i~~~~~~~~~p~iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
+.+.........+..+.|.||+|+||||+++.+++.++
T Consensus 33 ~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 33 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp HHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34444444444455788999999999999999988764
No 305
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.57 E-value=0.011 Score=61.51 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.3
Q ss_pred EEEeecCCCCCCcchhHhhhcccee
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
-++||.||+|||||||.+.|+..+.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4799999999999999999998763
No 306
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.56 E-value=0.02 Score=60.37 Aligned_cols=33 Identities=30% Similarity=0.414 Sum_probs=26.8
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccceeeeEEe
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVS 547 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vis 547 (862)
..+.-|.|.||+|+||||+|+.++..++..++.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~ 81 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIR 81 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 345567889999999999999999988755444
No 307
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.56 E-value=0.0092 Score=59.13 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=22.5
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhce
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~L 86 (862)
.+.+|+|+|++||||||+++.|...+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999998754
No 308
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.55 E-value=0.01 Score=60.90 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.1
Q ss_pred cEEEeecCCCCCCcchhHhhhc
Q 002965 517 PVIVGIGGPSGSGKTSLAHKMA 538 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~ 538 (862)
--+++|.||+|||||||++.|+
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 4589999999999999999987
No 309
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.55 E-value=0.0043 Score=61.39 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=21.8
Q ss_pred eEEEeecCCCCCCcchHHHHhhhce
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L 86 (862)
+.+|+|+|++|||||||++.|...+
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998765
No 310
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.52 E-value=0.015 Score=63.09 Aligned_cols=56 Identities=21% Similarity=0.339 Sum_probs=37.9
Q ss_pred eEEecc--ceehhhHHHHHHHH-----------hcCCeEEEeecCCCCCCcchHHHHhhhceeeEEEee
Q 002965 38 HASFDH--GYYLLVKSIQELRE-----------KKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISM 93 (862)
Q Consensus 38 ~~s~~~--~y~~l~~~i~~~~~-----------~~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~ 93 (862)
.++|++ +.....+.+..... ....+.-|.|.||+|+|||++|+.+++.++..++..
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v 82 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSV 82 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence 456776 44555555544331 112345689999999999999999999888665544
No 311
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.52 E-value=0.015 Score=65.88 Aligned_cols=59 Identities=31% Similarity=0.418 Sum_probs=41.6
Q ss_pred ceeEEecc--ceehhhHHHHHHHH----------h--cCCeEEEeecCCCCCCcchHHHHhhhceeeEEEeec
Q 002965 36 PVHASFDH--GYYLLVKSIQELRE----------K--KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (862)
Q Consensus 36 ~~~~s~~~--~y~~l~~~i~~~~~----------~--~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D 94 (862)
...++|++ ++....+.+..... . -+.|.=|.+.||+|+|||++|+++|..+|+.++..+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~ 247 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSP 247 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 34567888 56555555543321 1 134566899999999999999999999997765543
No 312
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.50 E-value=0.018 Score=62.09 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=37.1
Q ss_pred ehhhHHHHHHHHhcCCeEEEeecCCCCCCcchHHHHhhhceeeEEEeec
Q 002965 46 YLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (862)
Q Consensus 46 ~~l~~~i~~~~~~~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D 94 (862)
...++.+....+....+..+.+.|++|+||||+++.+++.++..++..+
T Consensus 32 ~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~ 80 (324)
T 3u61_B 32 AFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVN 80 (324)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 3445555555555555667889999999999999999999887776555
No 313
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.49 E-value=0.011 Score=61.60 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=22.3
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-++||.||+|||||||.+.|+..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999999866
No 314
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.48 E-value=0.0066 Score=69.53 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=30.0
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhcee-----eEEEeeccccc
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRV 98 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~ 98 (862)
..+.+|.++|.+||||||+++.|++.++ +..++.|.+..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~ 80 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRR 80 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhh
Confidence 4567899999999999999999998776 44555555433
No 315
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.47 E-value=0.016 Score=63.40 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=28.8
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhce----e-eEEEeeccc
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVI----G-CTLISMENY 96 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~L----g-~~vI~~D~~ 96 (862)
+++.+|+|.|++||||||+++.|+..+ | +.+...|-+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~ 168 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTF 168 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccc
Confidence 567899999999999999999998765 2 444555543
No 316
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.45 E-value=0.012 Score=62.21 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=22.3
Q ss_pred EEEeecCCCCCCcchhHhhhcccee
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
-++||.||+|||||||.+.|+..+.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4799999999999999999998663
No 317
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.45 E-value=0.01 Score=60.11 Aligned_cols=24 Identities=46% Similarity=0.553 Sum_probs=21.6
Q ss_pred CcEEEeecCCCCCCcchhHhhhcc
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMAN 539 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~ 539 (862)
.--+++|.||+|||||||++.|+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999976
No 318
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.44 E-value=0.01 Score=62.69 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=22.8
Q ss_pred CcEEEeecCCCCCCcchhHhhhccce
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
.--+|+|.||+||||||+.+.|...+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 44689999999999999999998765
No 319
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.44 E-value=0.0098 Score=58.94 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.1
Q ss_pred cEEEeecCCCCCCcchhHhhhccce
Q 002965 517 PVIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
..+|+|+|++|||||||++.|...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4688999999999999999998764
No 320
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.43 E-value=0.01 Score=59.19 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=21.5
Q ss_pred EEeecCCCCCCcchHHHHhhhceeeE
Q 002965 64 TVGIGGPSGSGKTSLAEKLASVIGCT 89 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~ 89 (862)
+|.|+|++||||||+|..|+.. |.+
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~~~ 25 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-APQ 25 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-CSS
T ss_pred CEEEECCCCCcHHHHHHHHHhc-CCC
Confidence 3789999999999999999876 643
No 321
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.42 E-value=0.014 Score=64.47 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=24.0
Q ss_pred CcEEEeecCCCCCCcchhHhhhccce
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
.+-+|+|.||+||||||+++.|+..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 57899999999999999999999876
No 322
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.42 E-value=0.017 Score=65.50 Aligned_cols=36 Identities=36% Similarity=0.445 Sum_probs=30.6
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhce---e--eEEEeeccc
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENY 96 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~L---g--~~vI~~D~~ 96 (862)
++.+|+++|++||||||++..|+..+ | +.++++|-|
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 47899999999999999999998755 2 667888865
No 323
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.41 E-value=0.012 Score=61.49 Aligned_cols=24 Identities=38% Similarity=0.649 Sum_probs=21.9
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-++||.||+|||||||.+.|+..+
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999998866
No 324
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.40 E-value=0.019 Score=58.16 Aligned_cols=48 Identities=19% Similarity=0.294 Sum_probs=32.5
Q ss_pred hhHHHHHHHHhcCCeEEEeecCCCCCCcchHHHHhhhcee-----eEEEeeccc
Q 002965 48 LVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENY 96 (862)
Q Consensus 48 l~~~i~~~~~~~~~~~iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~ 96 (862)
+++.+...... +....|.|.|++|+||||+++.+++.++ +..++++++
T Consensus 39 ~~~~l~~~~~~-~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 39 LIGALKSAASG-DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp HHHHHHHHHHT-CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred HHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 34444433332 2445688999999999999999988664 455666554
No 325
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.40 E-value=0.023 Score=57.60 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCCcEEEeecCCCCCCcchhHhhhcccee
Q 002965 504 VQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 504 ~~~i~~~~~~~~~p~iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
+..+....... .+..|.|.||+|+||||+++.++..++
T Consensus 40 ~~~l~~~~~~~-~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 40 IGALKSAASGD-GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp HHHHHHHHHTC-SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 33444444432 345677899999999999999988764
No 326
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.40 E-value=0.011 Score=60.85 Aligned_cols=24 Identities=42% Similarity=0.394 Sum_probs=21.4
Q ss_pred EEEeecCCCCCCcchHHHHhhhce
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L 86 (862)
-++||.|++|||||||.+.|+..+
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999998754
No 327
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.38 E-value=0.012 Score=57.83 Aligned_cols=25 Identities=32% Similarity=0.295 Sum_probs=22.2
Q ss_pred eEEEeecCCCCCCcchHHHHhhhce
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L 86 (862)
...++|.|++||||||+++.++..+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998765
No 328
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.37 E-value=0.019 Score=63.86 Aligned_cols=34 Identities=29% Similarity=0.271 Sum_probs=28.3
Q ss_pred cCCeEEEeecCCCCCCcchHHHHhhhceeeEEEe
Q 002965 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLIS 92 (862)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~ 92 (862)
-+...+|+|.|++||||||+++.|+..++..++.
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 3455689999999999999999999877766555
No 329
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.36 E-value=0.013 Score=61.15 Aligned_cols=25 Identities=28% Similarity=0.595 Sum_probs=22.4
Q ss_pred cEEEeecCCCCCCcchhHhhhccce
Q 002965 517 PVIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
--+++|.||+|||||||.+.|+..+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999999765
No 330
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.36 E-value=0.013 Score=61.69 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=21.9
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-++||.||+|||||||.+.|+..+
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999866
No 331
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.36 E-value=0.015 Score=59.17 Aligned_cols=22 Identities=50% Similarity=0.380 Sum_probs=20.2
Q ss_pred EEeecCCCCCCcchHHHHhhhc
Q 002965 64 TVGIGGPSGSGKTSLAEKLASV 85 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~ 85 (862)
++||.|++|||||||.+.|+..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 332
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.35 E-value=0.013 Score=60.99 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=21.9
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-++||.||+|||||||.+.|+..+
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999866
No 333
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=94.34 E-value=0.013 Score=59.43 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=33.5
Q ss_pred CCcEEEeecCCCCCCcchhHhhhcccee---eeEEeeccccc
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG---CEVVSLESYFK 553 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~---~~vislDdfy~ 553 (862)
..+.||+|+|-+||||+|+|+.|.+.+| +.+++|-|--+
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK 50 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLK 50 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHH
Confidence 4678999999999999999999998774 77888887554
No 334
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.34 E-value=0.012 Score=63.53 Aligned_cols=26 Identities=31% Similarity=0.257 Sum_probs=23.1
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhce
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~L 86 (862)
++.+|+|.|++||||||+++.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45689999999999999999999755
No 335
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.33 E-value=0.025 Score=54.75 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=21.4
Q ss_pred cEEEeecCCCCCCcchhHhhhccce
Q 002965 517 PVIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
+.-|.|.||+|+||||+++.+++.+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4445789999999999999999876
No 336
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.32 E-value=0.016 Score=65.64 Aligned_cols=38 Identities=26% Similarity=0.342 Sum_probs=31.8
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhce-----eeEEEeeccccc
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVI-----GCTLISMENYRV 98 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~L-----g~~vI~~D~~~~ 98 (862)
++.+|+++|++||||||++..|+..+ .+.++++|.++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~ 141 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP 141 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 47899999999999999999998755 367889887643
No 337
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.31 E-value=0.013 Score=60.46 Aligned_cols=24 Identities=29% Similarity=0.546 Sum_probs=21.9
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-+++|.||+|||||||.+.|+..+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999866
No 338
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.30 E-value=0.02 Score=55.37 Aligned_cols=25 Identities=36% Similarity=0.387 Sum_probs=21.5
Q ss_pred eEEEeecCCCCCCcchHHHHhhhce
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L 86 (862)
+..+.|.|++|+||||+++.+++.+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3446799999999999999999875
No 339
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.30 E-value=0.019 Score=64.22 Aligned_cols=59 Identities=31% Similarity=0.450 Sum_probs=42.7
Q ss_pred eeEEecc--ceehhhHHHHHHHH----------h--cCCeEEEeecCCCCCCcchHHHHhhhceeeEEEeecc
Q 002965 37 VHASFDH--GYYLLVKSIQELRE----------K--KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (862)
Q Consensus 37 ~~~s~~~--~y~~l~~~i~~~~~----------~--~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~ 95 (862)
..++|++ ++....+.+.+... . -+.|.=|.+.||+|+|||++|+++|..+|+.++..+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~ 215 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSG 215 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEh
Confidence 3578988 66666666644321 1 1334568899999999999999999999987765543
No 340
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.30 E-value=0.0085 Score=62.72 Aligned_cols=29 Identities=38% Similarity=0.499 Sum_probs=24.5
Q ss_pred EEeecCCCCCCcchHHHHhhhceeeEEEe
Q 002965 64 TVGIGGPSGSGKTSLAEKLASVIGCTLIS 92 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~ 92 (862)
-|.|.|++|+||||+|+.++..++..++.
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~~~~~~~ 74 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEAHVPFFS 74 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHHTCCCCC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 38899999999999999999988765443
No 341
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.29 E-value=0.013 Score=60.84 Aligned_cols=30 Identities=33% Similarity=0.461 Sum_probs=24.6
Q ss_pred EeecCCCCCCcchhHhhhccceeeeEEeec
Q 002965 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (862)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~~~vislD 549 (862)
|+|.||+||||||+++.++..++...+..+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~ 81 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPFITAS 81 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEee
Confidence 889999999999999999987764444433
No 342
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.28 E-value=0.013 Score=62.35 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=21.1
Q ss_pred EEeecCCCCCCcchHHHHhhhce
Q 002965 64 TVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~L 86 (862)
++||.|++|||||||.+.|+..+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 69999999999999999998755
No 343
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.28 E-value=0.017 Score=65.32 Aligned_cols=59 Identities=20% Similarity=0.280 Sum_probs=42.2
Q ss_pred eeEEecc--ceehhhHHHHHHH----------Hh--cCCeEEEeecCCCCCCcchHHHHhhhceeeEEEeecc
Q 002965 37 VHASFDH--GYYLLVKSIQELR----------EK--KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (862)
Q Consensus 37 ~~~s~~~--~y~~l~~~i~~~~----------~~--~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~ 95 (862)
..++|++ ++....+.+.... ++ -+.|.=|.+.||+|+|||++|+++|..+|+.++..+.
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~ 248 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAA 248 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEeh
Confidence 4567888 6666655554331 11 1345679999999999999999999999987765543
No 344
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.27 E-value=0.014 Score=60.76 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.6
Q ss_pred EEEeecCCCCCCcchHHHHhhhce
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L 86 (862)
-++||.|++|||||||.+.|+..+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999998755
No 345
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.27 E-value=0.014 Score=61.83 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.3
Q ss_pred EEEeecCCCCCCcchhHhhhcccee
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
-++||.||+|||||||.+.|+..+.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 4799999999999999999998663
No 346
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.24 E-value=0.017 Score=58.76 Aligned_cols=45 Identities=18% Similarity=0.321 Sum_probs=32.6
Q ss_pred hHHHHHHHHhcCCCcEEEeecCCCCCCcchhHhhhccceeeeEEe
Q 002965 503 SVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVS 547 (862)
Q Consensus 503 ~~~~i~~~~~~~~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vis 547 (862)
.+..++......++..-+.|.||+|+||||+|..|+..++..+++
T Consensus 44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 345566666554444568899999999999999999877544443
No 347
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.24 E-value=0.012 Score=60.33 Aligned_cols=24 Identities=33% Similarity=0.649 Sum_probs=21.6
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-+++|.||+|||||||.+.|+..+
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368899999999999999998765
No 348
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.23 E-value=0.026 Score=63.61 Aligned_cols=60 Identities=25% Similarity=0.299 Sum_probs=43.7
Q ss_pred ceeEEecc--ceehhhHHHHHHHH----------h--cCCeEEEeecCCCCCCcchHHHHhhhceeeEEEeecc
Q 002965 36 PVHASFDH--GYYLLVKSIQELRE----------K--KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (862)
Q Consensus 36 ~~~~s~~~--~y~~l~~~i~~~~~----------~--~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~ 95 (862)
...++|++ ++....+.+.+... . -+.+.=|.+.||+|+|||++|+++|..+|+.++..+.
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~ 249 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVG 249 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEES
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEH
Confidence 44678988 66666666644331 1 1345669999999999999999999999977765543
No 349
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.23 E-value=0.014 Score=61.88 Aligned_cols=24 Identities=38% Similarity=0.616 Sum_probs=21.5
Q ss_pred EEEeecCCCCCCcchHHHHhhhce
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L 86 (862)
-++||.|++|||||||.+.|+..+
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 369999999999999999998755
No 350
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.21 E-value=0.0059 Score=60.37 Aligned_cols=24 Identities=46% Similarity=0.664 Sum_probs=21.8
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
.+|+|.|+||||||||++.|...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998865
No 351
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.21 E-value=0.013 Score=61.80 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=22.4
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhce
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~L 86 (862)
+.-+|+|+||+||||||+.+.|+..+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 34589999999999999999998754
No 352
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.20 E-value=0.02 Score=61.69 Aligned_cols=26 Identities=35% Similarity=0.377 Sum_probs=23.4
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhce
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~L 86 (862)
++.+|+|.|++||||||+++.|+..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999765
No 353
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.19 E-value=0.015 Score=61.34 Aligned_cols=24 Identities=33% Similarity=0.690 Sum_probs=21.9
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-++||.||+|||||||.+.|+..+
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999999866
No 354
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.18 E-value=0.015 Score=62.66 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=29.4
Q ss_pred CcEEEeecCCCCCCcchhHhhhccce----e--eeEEeeccc
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIV----G--CEVVSLESY 551 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l----~--~~vislDdf 551 (862)
++.+|++.|++||||||++..|+..+ | +.++..|-|
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 46789999999999999999998655 2 567777765
No 355
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.16 E-value=0.023 Score=61.68 Aligned_cols=35 Identities=31% Similarity=0.438 Sum_probs=27.3
Q ss_pred eEEEeecCCCCCCcchHHHHhhhce-eeEE--Eeeccc
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVI-GCTL--ISMENY 96 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L-g~~v--I~~D~~ 96 (862)
+.-|.|.||+|+|||++|+.++..+ +..+ +++.++
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l 82 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 82 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred CceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence 3568899999999999999999887 5544 444444
No 356
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.16 E-value=0.015 Score=60.69 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=21.9
Q ss_pred EEEeecCCCCCCcchHHHHhhhce
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L 86 (862)
-++||.|++|||||||.+.|+..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999998755
No 357
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.16 E-value=0.018 Score=66.18 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=24.3
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccce
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
+.+.+|+|.|++||||||+++.|+..+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 357899999999999999999999766
No 358
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.16 E-value=0.015 Score=61.75 Aligned_cols=24 Identities=33% Similarity=0.660 Sum_probs=21.9
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-+++|.||+|||||||.+.|+..+
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999999866
No 359
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.16 E-value=0.02 Score=62.37 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=30.3
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhcee-----eEEEeeccc
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENY 96 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~ 96 (862)
.++.+|+|+|++||||||++..|+..+. +.++++|-+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 3467999999999999999999987652 567777754
No 360
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.15 E-value=0.016 Score=60.04 Aligned_cols=32 Identities=31% Similarity=0.405 Sum_probs=26.0
Q ss_pred CcEEEeecCCCCCCcchhHhhhccceeeeEEe
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVS 547 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~~~vis 547 (862)
.+.-|.|.||+|+||||+|+.++..++..++.
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~ 69 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLA 69 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 34557789999999999999999988755443
No 361
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.12 E-value=0.015 Score=61.40 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=21.6
Q ss_pred EEEeecCCCCCCcchHHHHhhhce
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L 86 (862)
-++||.|++|||||||.+.|+..+
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999998755
No 362
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.12 E-value=0.015 Score=61.23 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.8
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-++||.||+|||||||.+.|+..+
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 479999999999999999998765
No 363
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.11 E-value=0.015 Score=60.79 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=21.5
Q ss_pred EEEeecCCCCCCcchHHHHhhhce
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L 86 (862)
-++||.|++|||||||.+.|+..+
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999998755
No 364
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.10 E-value=0.017 Score=61.25 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=27.1
Q ss_pred CcEEEeecCCCCCCcchhHhhhccceeeeEEee
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL 548 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~~~visl 548 (862)
.+.-|.|.||+|+||||+|+.++..+++.++.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i 85 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLNI 85 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 356778899999999999999999887655443
No 365
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.09 E-value=0.018 Score=63.55 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=21.3
Q ss_pred EEeecCCCCCCcchhHhhhccce
Q 002965 519 IVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l 541 (862)
+|+|+||+||||||+.+.|...+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 89999999999999999998765
No 366
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.09 E-value=0.015 Score=59.62 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=19.5
Q ss_pred EEEeecCCCCCCcchHHHHhh
Q 002965 63 VTVGIGGPSGSGKTSLAEKLA 83 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La 83 (862)
-+++|.|++|||||||++.++
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 479999999999999999987
No 367
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.08 E-value=0.019 Score=62.52 Aligned_cols=29 Identities=38% Similarity=0.509 Sum_probs=24.8
Q ss_pred CcEEEeecCCCCCCcchhHhhhccceeee
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCE 544 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~~~ 544 (862)
.+-.++|.||+||||||+++.++..+++.
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~ 78 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASELQTN 78 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 44568899999999999999999988654
No 368
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.07 E-value=0.031 Score=55.50 Aligned_cols=37 Identities=32% Similarity=0.583 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCCcEEEeecCCCCCCcchhHhhhccce
Q 002965 504 VQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 504 ~~~i~~~~~~~~~p~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
+..+.........+. |.|.||+|+||||+++.+++.+
T Consensus 26 ~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 26 IQRLKGYVERKNIPH-LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp HHHHHHHHHTTCCCC-EEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 344444444443333 7889999999999999998865
No 369
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.07 E-value=0.02 Score=62.24 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=30.0
Q ss_pred CCcEEEeecCCCCCCcchhHhhhcccee-----eeEEeeccc
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESY 551 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdf 551 (862)
+.+.+|+|+|++||||||++..|+..+. +.++..|-+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 3578999999999999999999998762 556666643
No 370
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.07 E-value=0.016 Score=60.15 Aligned_cols=28 Identities=39% Similarity=0.545 Sum_probs=23.7
Q ss_pred EeecCCCCCCcchHHHHhhhceeeEEEe
Q 002965 65 VGIGGPSGSGKTSLAEKLASVIGCTLIS 92 (862)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~vI~ 92 (862)
|+|.|++||||||+++.++..++...+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~ 79 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPFIT 79 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 8999999999999999999877644433
No 371
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.07 E-value=0.015 Score=60.83 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=21.2
Q ss_pred EEEeecCCCCCCcchhHhhhccc
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANI 540 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~ 540 (862)
-++||.||+|||||||.+.|+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999985
No 372
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.06 E-value=0.022 Score=62.13 Aligned_cols=30 Identities=37% Similarity=0.515 Sum_probs=25.6
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhceeeEE
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTL 90 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~v 90 (862)
.+-.++|.||+|+||||+++.++..+++.+
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 345689999999999999999999887643
No 373
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.05 E-value=0.016 Score=60.73 Aligned_cols=24 Identities=38% Similarity=0.721 Sum_probs=21.7
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-+++|.||+|||||||.+.|+..+
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 379999999999999999998765
No 374
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.05 E-value=0.021 Score=64.94 Aligned_cols=58 Identities=21% Similarity=0.298 Sum_probs=42.6
Q ss_pred eEEecc--ceehhhHHHHHHH----------Hh--cCCeEEEeecCCCCCCcchHHHHhhhceeeEEEeecc
Q 002965 38 HASFDH--GYYLLVKSIQELR----------EK--KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (862)
Q Consensus 38 ~~s~~~--~y~~l~~~i~~~~----------~~--~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~ 95 (862)
.++|++ ++....+.+.+.. +. -+.+.=|.+.||+|+|||++|+++|..+|+.++..+.
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~ 276 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIG 276 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEh
Confidence 578988 6666666664432 11 1445678899999999999999999999987765543
No 375
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.04 E-value=0.016 Score=60.41 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=21.7
Q ss_pred EEEeecCCCCCCcchHHHHhhhce
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L 86 (862)
-++||.|++|||||||.+.|+..+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999998754
No 376
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.04 E-value=0.016 Score=61.23 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=21.9
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-++||.||+|||||||.+.|+..+
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 479999999999999999999765
No 377
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.03 E-value=0.016 Score=61.77 Aligned_cols=25 Identities=24% Similarity=0.179 Sum_probs=22.2
Q ss_pred EEEeecCCCCCCcchhHhhhcccee
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
-++||.||+|||||||.+.|+..+.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3789999999999999999998663
No 378
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.03 E-value=0.012 Score=59.17 Aligned_cols=34 Identities=32% Similarity=0.662 Sum_probs=26.1
Q ss_pred EEeecCCCCCCcchhHhhhcccee-eeEEeeccccc
Q 002965 519 IVGIGGPSGSGKTSLAHKMANIVG-CEVVSLESYFK 553 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~-~~vislDdfy~ 553 (862)
+|+|.||+||||||+.+.|+..+. .- +..|.|+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G-i~~~g~~~ 37 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG-VPVDGFYT 37 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT-CCCEEEEC
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC-EEEcCEec
Confidence 589999999999999999998762 11 55566554
No 379
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.99 E-value=0.017 Score=60.16 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.5
Q ss_pred EEEeecCCCCCCcchHHHHhhhce
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L 86 (862)
-++||.|++|||||||.+.|+..+
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999998754
No 380
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.98 E-value=0.0095 Score=69.63 Aligned_cols=36 Identities=25% Similarity=0.263 Sum_probs=29.6
Q ss_pred CcEEEeecCCCCCCcchhHhhhcccee------eeEEeeccc
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIVG------CEVVSLESY 551 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~------~~vislDdf 551 (862)
+..+|+|.|++||||||+++.|+..++ +.++..|++
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 567899999999999999999999874 334666665
No 381
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.97 E-value=0.015 Score=58.87 Aligned_cols=22 Identities=45% Similarity=0.508 Sum_probs=20.5
Q ss_pred EEEeecCCCCCCcchHHHHhhh
Q 002965 63 VTVGIGGPSGSGKTSLAEKLAS 84 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~ 84 (862)
-+++|.|++||||||+++.|+.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999976
No 382
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.97 E-value=0.017 Score=60.71 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.8
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-++||.||+|||||||.+.|+..+
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999765
No 383
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.96 E-value=0.017 Score=60.75 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=21.6
Q ss_pred EEEeecCCCCCCcchHHHHhhhce
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L 86 (862)
-++||.|++|||||||.+.|+..+
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999998755
No 384
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.96 E-value=0.017 Score=59.62 Aligned_cols=29 Identities=31% Similarity=0.408 Sum_probs=25.4
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceee
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGC 88 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~ 88 (862)
.+..+|.|.|++||||||+++.|++.|+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45678999999999999999999987754
No 385
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.94 E-value=0.017 Score=59.61 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.5
Q ss_pred EEEeecCCCCCCcchHHHHhhhce
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L 86 (862)
-++||.|++|||||||.+.|+..+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999998755
No 386
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.91 E-value=0.024 Score=54.81 Aligned_cols=25 Identities=36% Similarity=0.347 Sum_probs=21.6
Q ss_pred eEEEeecCCCCCCcchHHHHhhhce
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L 86 (862)
...|.|.|++|+||||+|+.+++.+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3446899999999999999999866
No 387
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.91 E-value=0.017 Score=60.99 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=21.7
Q ss_pred EEEeecCCCCCCcchHHHHhhhce
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L 86 (862)
-++||.|++|||||||.+.|+..+
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 469999999999999999998755
No 388
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.89 E-value=0.032 Score=60.66 Aligned_cols=39 Identities=26% Similarity=0.434 Sum_probs=28.4
Q ss_pred hHHHHHHHHhcCCCcEEEeecCCCCCCcchhHhhhcccee
Q 002965 503 SVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 503 ~~~~i~~~~~~~~~p~iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
+++.+.....+..-|. +.+.||+|+||||+++.++..+.
T Consensus 33 ~~~~L~~~i~~g~~~~-~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 33 VITTVRKFVDEGKLPH-LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHHHHHHTTCCCC-EEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHc
Confidence 4444555454444344 78899999999999999998763
No 389
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.87 E-value=0.027 Score=61.00 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.9
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhc
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASV 85 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~ 85 (862)
+++.+++|+|++||||||+.+.|...
T Consensus 2 ~~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 2 NPIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CCEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred CcccEEEEEecCCCCHHHHHHHHHhh
Confidence 35678999999999999999999864
No 390
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.85 E-value=0.019 Score=65.12 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=31.3
Q ss_pred CcEEEeecCCCCCCcchhHhhhccce-----eeeEEeecccc
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYF 552 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l-----~~~vislDdfy 552 (862)
.|.+|+|+|++||||||++..|+..+ .+.++++|-|.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r 139 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence 46789999999999999999999876 37788888754
No 391
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.85 E-value=0.018 Score=61.01 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=21.2
Q ss_pred EEEeecCCCCCCcchhHhhhccc
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANI 540 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~ 540 (862)
-++||.||+|||||||.+.|+..
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999986
No 392
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.85 E-value=0.018 Score=61.06 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=21.6
Q ss_pred EEEeecCCCCCCcchHHHHhhhce
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L 86 (862)
-+++|.|++|||||||.+.|+..+
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999998755
No 393
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.84 E-value=0.016 Score=59.45 Aligned_cols=23 Identities=35% Similarity=0.700 Sum_probs=21.0
Q ss_pred EEeecCCCCCCcchHHHHhhhce
Q 002965 64 TVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~L 86 (862)
++||.|++|||||||.+.|+..+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 59999999999999999998755
No 394
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.81 E-value=0.015 Score=58.35 Aligned_cols=23 Identities=43% Similarity=0.677 Sum_probs=21.1
Q ss_pred EEeecCCCCCCcchHHHHhhhce
Q 002965 64 TVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~L 86 (862)
+|+|.|++||||||+.+.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58999999999999999998765
No 395
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.81 E-value=0.025 Score=62.20 Aligned_cols=32 Identities=34% Similarity=0.447 Sum_probs=27.0
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhceeeEEEe
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLIS 92 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~ 92 (862)
.+.-|.|.|++|+||||+|+.++..+++.++.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~ 147 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFS 147 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 35568899999999999999999988866543
No 396
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.79 E-value=0.017 Score=63.87 Aligned_cols=33 Identities=24% Similarity=0.517 Sum_probs=25.6
Q ss_pred EEEeecCCCCCCcchhHhhhcccee--eeEEeecc
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIVG--CEVVSLES 550 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~--~~vislDd 550 (862)
-+|+|+||+|||||||.+.|...+. ...+..++
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~ 210 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIED 210 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECC
Confidence 3688999999999999999998764 23445554
No 397
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.79 E-value=0.019 Score=60.46 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=21.6
Q ss_pred EEEeecCCCCCCcchHHHHhhhce
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L 86 (862)
-++||.|++|||||||.+.|+..+
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999998755
No 398
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.79 E-value=0.019 Score=60.52 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.5
Q ss_pred EEEeecCCCCCCcchHHHHhhhce
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L 86 (862)
-++||.|++|||||||.+.|+..+
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 369999999999999999998754
No 399
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.77 E-value=0.019 Score=60.67 Aligned_cols=30 Identities=33% Similarity=0.461 Sum_probs=24.7
Q ss_pred EeecCCCCCCcchhHhhhccceeeeEEeec
Q 002965 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (862)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~~~vislD 549 (862)
|+|.||+||||||+++.|+..++...+.++
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~~ 105 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFITAS 105 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEEEec
Confidence 889999999999999999987765444443
No 400
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.76 E-value=0.024 Score=61.41 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=27.4
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccceeeeEEeec
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislD 549 (862)
..+.-|.|.||+|+|||++|+.++..++..++..+
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~ 87 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYEMSANIKTTA 87 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEec
Confidence 34445778999999999999999998876555443
No 401
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.74 E-value=0.026 Score=56.70 Aligned_cols=40 Identities=23% Similarity=0.185 Sum_probs=28.9
Q ss_pred hhHHHHHHHHhcCCeEEEeecCCCCCCcchHHHHhhhcee
Q 002965 48 LVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG 87 (862)
Q Consensus 48 l~~~i~~~~~~~~~~~iIgItG~sGSGKSTlA~~La~~Lg 87 (862)
.++.+.........+..+.|.|++|+||||+++.+++.++
T Consensus 31 ~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 31 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp HHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444444444444445788999999999999999988665
No 402
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.73 E-value=0.02 Score=59.98 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=21.0
Q ss_pred EEEeecCCCCCCcchHHHHhhhc
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASV 85 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~ 85 (862)
-++||.|++|||||||.+.|+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999875
No 403
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.70 E-value=0.02 Score=59.12 Aligned_cols=30 Identities=27% Similarity=0.370 Sum_probs=25.9
Q ss_pred CCCcEEEeecCCCCCCcchhHhhhccceee
Q 002965 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGC 543 (862)
Q Consensus 514 ~~~p~iIgI~G~sGSGKTTla~~L~~~l~~ 543 (862)
..++.+|.|.|++||||||+++.|++.|+.
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 446789999999999999999999988754
No 404
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.67 E-value=0.021 Score=56.44 Aligned_cols=32 Identities=28% Similarity=0.320 Sum_probs=27.1
Q ss_pred EEeecCCCCCCcchHHHHhhhceeeEEEeeccc
Q 002965 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENY 96 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~ 96 (862)
-|.|+|+||+||||+|..|.+ -|..+++-|..
T Consensus 18 gvli~G~SGaGKStlal~L~~-rG~~lvaDD~v 49 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALID-RGHQLVCDDVI 49 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHH-TTCEEEESSEE
T ss_pred EEEEEcCCCCCHHHHHHHHHH-cCCeEecCCEE
Confidence 489999999999999999987 48777776664
No 405
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.65 E-value=0.028 Score=62.07 Aligned_cols=26 Identities=35% Similarity=0.377 Sum_probs=23.4
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhce
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~L 86 (862)
++.+|+|.|++||||||+++.|+..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 45799999999999999999999765
No 406
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.65 E-value=0.019 Score=61.68 Aligned_cols=36 Identities=28% Similarity=0.428 Sum_probs=29.3
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhce----e--eEEEeeccc
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVI----G--CTLISMENY 96 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~L----g--~~vI~~D~~ 96 (862)
++.+|+++|++||||||++..|+..+ | +.++++|.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 35689999999999999999998644 3 567888875
No 407
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.65 E-value=0.021 Score=60.41 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.5
Q ss_pred EEEeecCCCCCCcchHHHHhhhce
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L 86 (862)
-++||.|++|||||||.+.|+..+
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 369999999999999999998754
No 408
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.64 E-value=0.021 Score=59.87 Aligned_cols=23 Identities=30% Similarity=0.681 Sum_probs=21.0
Q ss_pred EEeecCCCCCCcchHHHHhhhce
Q 002965 64 TVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~L 86 (862)
++||.|++|||||||.+.|+..+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 69999999999999999998754
No 409
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.63 E-value=0.025 Score=59.43 Aligned_cols=35 Identities=34% Similarity=0.425 Sum_probs=28.4
Q ss_pred CCCcEEEeecCCCCCCcchhHhhhccceeeeEEee
Q 002965 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL 548 (862)
Q Consensus 514 ~~~p~iIgI~G~sGSGKTTla~~L~~~l~~~visl 548 (862)
...+.-|.|.||+|+|||++|+.++..+++.++..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 34567788999999999999999999887655443
No 410
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.63 E-value=0.021 Score=60.92 Aligned_cols=24 Identities=29% Similarity=0.254 Sum_probs=21.5
Q ss_pred EEEeecCCCCCCcchHHHHhhhce
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L 86 (862)
-++||.|++|||||||.+.|+..+
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 369999999999999999998755
No 411
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.63 E-value=0.024 Score=61.68 Aligned_cols=37 Identities=22% Similarity=0.452 Sum_probs=26.1
Q ss_pred HHHHHHHH-hcCCCcEEEeecCCCCCCcchhHhhhccce
Q 002965 504 VQAIQALL-ENKGLPVIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 504 ~~~i~~~~-~~~~~p~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
++.++... .....|. +.|.||+|+||||+++.|+..+
T Consensus 23 ~~~l~~~~~~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 23 TNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp HHHHHTTTTCTTCCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred HHHHHHHHhhCCCCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 33344333 3333455 8899999999999999999843
No 412
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.62 E-value=0.024 Score=64.09 Aligned_cols=36 Identities=31% Similarity=0.405 Sum_probs=30.6
Q ss_pred CCCcEEEeecCCCCCCcchhHhhhccceeeeEEeec
Q 002965 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (862)
Q Consensus 514 ~~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislD 549 (862)
-..|.=|.+.||+|+|||++|+++|..+++.++.++
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~ 238 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVN 238 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 346777889999999999999999999987776654
No 413
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.62 E-value=0.019 Score=62.03 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=23.9
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhcee
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG 87 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg 87 (862)
++.-+++|.|++|||||||++.|+..+.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 4446799999999999999999988663
No 414
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.61 E-value=0.027 Score=60.79 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=24.8
Q ss_pred cCCCcEEEeecCCCCCCcchhHhhhcccee
Q 002965 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 513 ~~~~p~iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
.-+.--+|+|.||+|||||||++.|...+.
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 334456899999999999999999998763
No 415
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.60 E-value=0.032 Score=55.62 Aligned_cols=24 Identities=33% Similarity=0.315 Sum_probs=21.4
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
.-|.|.||+|+||||+++.++..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 567789999999999999998765
No 416
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.58 E-value=0.028 Score=59.03 Aligned_cols=35 Identities=37% Similarity=0.544 Sum_probs=28.9
Q ss_pred cCCeEEEeecCCCCCCcchHHHHhhhceeeEEEee
Q 002965 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISM 93 (862)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~ 93 (862)
...+.-|.|.|++|+|||++|+.+++.+++.++..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 45567899999999999999999999888655443
No 417
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.58 E-value=0.022 Score=60.20 Aligned_cols=23 Identities=43% Similarity=0.663 Sum_probs=21.2
Q ss_pred EEeecCCCCCCcchhHhhhccce
Q 002965 519 IVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l 541 (862)
+++|.||+|||||||.+.|+..+
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998765
No 418
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.57 E-value=0.015 Score=66.65 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=27.9
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccceeeeEEeecc
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES 550 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDd 550 (862)
+.+.+|.+.|.+||||||+++.|+..++...+++|.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~ 72 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTRE 72 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceE
Confidence 457889999999999999999999887643334443
No 419
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.53 E-value=0.022 Score=59.80 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=21.2
Q ss_pred EEeecCCCCCCcchHHHHhhhce
Q 002965 64 TVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~L 86 (862)
++||.|++|||||||.+.|+..+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999998755
No 420
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.51 E-value=0.023 Score=59.96 Aligned_cols=28 Identities=39% Similarity=0.545 Sum_probs=23.6
Q ss_pred EeecCCCCCCcchHHHHhhhceeeEEEe
Q 002965 65 VGIGGPSGSGKTSLAEKLASVIGCTLIS 92 (862)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~vI~ 92 (862)
|+|.|++||||||+++.++..++...+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~ 103 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFIT 103 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEEE
Confidence 8999999999999999999877644433
No 421
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.51 E-value=0.031 Score=60.48 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=27.9
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceeeEEEeec
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D 94 (862)
..+..|.|.|++|+||||+|+.+++.++..++..+
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~ 87 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYEMSANIKTTA 87 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEec
Confidence 34456899999999999999999998886554443
No 422
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.50 E-value=0.049 Score=59.89 Aligned_cols=32 Identities=31% Similarity=0.435 Sum_probs=26.8
Q ss_pred CcEEEeecCCCCCCcchhHhhhccceeeeEEe
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVS 547 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~~~vis 547 (862)
.+.-|.|.||+|+|||++|+.++..+++.++.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~ 147 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFS 147 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 45678889999999999999999988765543
No 423
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.48 E-value=0.038 Score=59.59 Aligned_cols=47 Identities=32% Similarity=0.405 Sum_probs=30.9
Q ss_pred HHHHHHHhcCC-CcEEEeecCCCCCCcchhHhhhccce---e--eeEEeeccc
Q 002965 505 QAIQALLENKG-LPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESY 551 (862)
Q Consensus 505 ~~i~~~~~~~~-~p~iIgI~G~sGSGKTTla~~L~~~l---~--~~vislDdf 551 (862)
.++.......+ .+.-+.|.||+|+||||+++.++..+ + +..++.+++
T Consensus 24 ~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 24 EVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp HHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred HHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 34444444432 23446679999999999999999876 3 344555554
No 424
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.48 E-value=0.025 Score=57.51 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=32.1
Q ss_pred hHHHHHHHHhcCCeEEEeecCCCCCCcchHHHHhhhceeeEEEe
Q 002965 49 VKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLIS 92 (862)
Q Consensus 49 ~~~i~~~~~~~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~ 92 (862)
+..++...+..++...+.|.||+|+||||+|..|++.++..+++
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 45555555544444569999999999999999999877554543
No 425
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.48 E-value=0.023 Score=62.46 Aligned_cols=34 Identities=35% Similarity=0.510 Sum_probs=28.5
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeecc
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~ 95 (862)
+.-|.+.||+|+|||++|+.+++.++.+++..+.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~ 84 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMADA 84 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEech
Confidence 4568899999999999999999998877665544
No 426
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.47 E-value=0.023 Score=60.14 Aligned_cols=23 Identities=43% Similarity=0.635 Sum_probs=21.0
Q ss_pred EEEeecCCCCCCcchHHHHhhhc
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASV 85 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~ 85 (862)
-++||.|++|||||||.+.|+..
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999875
No 427
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.47 E-value=0.024 Score=64.23 Aligned_cols=38 Identities=39% Similarity=0.456 Sum_probs=31.9
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhce-----eeEEEeeccccc
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVI-----GCTLISMENYRV 98 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~L-----g~~vI~~D~~~~ 98 (862)
.+.+|+|+|++||||||++..|+..+ .+.++++|-+..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~ 140 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRP 140 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCc
Confidence 45789999999999999999999765 277889988654
No 428
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.47 E-value=0.045 Score=59.89 Aligned_cols=29 Identities=28% Similarity=0.568 Sum_probs=24.9
Q ss_pred cCCCcEEEeecCCCCCCcchhHhhhccce
Q 002965 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 513 ~~~~p~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
......+|||.|++|||||||.+.|...+
T Consensus 51 ~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 51 QTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 34567899999999999999999998654
No 429
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.46 E-value=0.021 Score=60.49 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.8
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
+.|||.||+|||||||.+.|....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 679999999999999999998754
No 430
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.46 E-value=0.051 Score=58.78 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=26.8
Q ss_pred cEEEeecCCCCCCcchhHhhhccceeeeEEee
Q 002965 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL 548 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~~~visl 548 (862)
+.-|.|.||+|+|||++|+.+++.++..++..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~v 82 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANSTFFSV 82 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence 45678899999999999999999887665544
No 431
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.45 E-value=0.024 Score=61.88 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.8
Q ss_pred EEeecCCCCCCcchhHhhhcccee
Q 002965 519 IVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
+|+|.||+|||||||.+.|...+.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 788999999999999999998763
No 432
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.45 E-value=0.027 Score=61.96 Aligned_cols=31 Identities=32% Similarity=0.512 Sum_probs=26.2
Q ss_pred EEEeecCCCCCCcchHHHHhhhceeeEEEee
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISM 93 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~ 93 (862)
.-|.|.|++|+|||++|+.++..++..++..
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~~~~~~v 115 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEANSTFFSV 115 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 3478899999999999999999888766544
No 433
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.44 E-value=0.022 Score=58.16 Aligned_cols=32 Identities=25% Similarity=0.352 Sum_probs=26.2
Q ss_pred eEEEeecCCCCCCcchHHHHhhhcee---eEEEee
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVIG---CTLISM 93 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg---~~vI~~ 93 (862)
..+|.|.|++||||||+++.|++.|+ ..++.+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 46799999999999999999998774 445444
No 434
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.42 E-value=0.03 Score=59.33 Aligned_cols=31 Identities=29% Similarity=0.589 Sum_probs=24.8
Q ss_pred cEEEeecCCCCCCcchhHhhhccceeeeEEe
Q 002965 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVS 547 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~~~vis 547 (862)
+.-|.+.||+|+|||++|+.+++.++..++.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~ 80 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIK 80 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 3445679999999999999999988755443
No 435
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.42 E-value=0.027 Score=64.65 Aligned_cols=26 Identities=31% Similarity=0.348 Sum_probs=23.3
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhce
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~L 86 (862)
+..+|+|.|++||||||+++.|+..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 436
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.42 E-value=0.017 Score=60.07 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=24.0
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhcee
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVIG 87 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg 87 (862)
+..+|.|.|++||||||+++.|++.|+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999998774
No 437
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.41 E-value=0.021 Score=63.08 Aligned_cols=24 Identities=42% Similarity=0.461 Sum_probs=21.8
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-+++|.||+|||||||.+.|+..+
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 378999999999999999999866
No 438
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.40 E-value=0.017 Score=62.48 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=21.9
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-+|||.||+|||||||.+.|...+
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 479999999999999999998866
No 439
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.34 E-value=0.024 Score=62.71 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.9
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-++||.||+|||||||.+.|+..+
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 479999999999999999998866
No 440
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.33 E-value=0.025 Score=57.12 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=25.8
Q ss_pred cEEEeecCCCCCCcchhHhhhccce-----eeeEEeecc
Q 002965 517 PVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLES 550 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l-----~~~vislDd 550 (862)
--+++|.||+|||||||++.|+..+ .+.+++.+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 4588999999999999999998543 244555543
No 441
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.30 E-value=0.029 Score=58.53 Aligned_cols=31 Identities=39% Similarity=0.449 Sum_probs=24.7
Q ss_pred cEEEeecCCCCCCcchhHhhhccceeeeEEe
Q 002965 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVS 547 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~~~vis 547 (862)
+.-|.|.||+|+|||++|+.++..++..++.
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~ 74 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS 74 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 3347789999999999999999987654433
No 442
>3bhd_A Thtpase, thiamine triphosphatase; hydrolase, structural genomics consortium, CYTH SGC; HET: MSE CIT; 1.50A {Homo sapiens} PDB: 2jmu_A
Probab=93.30 E-value=0.071 Score=55.29 Aligned_cols=69 Identities=16% Similarity=0.135 Sum_probs=54.9
Q ss_pred hhhccceEEEEEEeeeeeeec--------C-eEEEEeeccCCCCCCceEEe-----c----cCHHHHhhccceeeecCcc
Q 002965 792 LLNLGYQAVAYIEASAFIYQD--------G-KILIEVDHLQDAPSPYLQIK-----G----VDKEAVAAAGSTLKLDGSY 853 (862)
Q Consensus 792 l~~lg~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~ 853 (862)
|..+|++.++.++-....|.- + ++.|.+|..+ ++.+|..|- | ..++.+.+++.+|||+...
T Consensus 129 L~~~~l~p~~~~~~~R~~~~l~~~~~~~~~~~~~v~LD~~~-~G~~~~ElElEl~~~~~~~~~~~~l~~la~~Lgl~~~~ 207 (234)
T 3bhd_A 129 LGPLGLQEVASFVTKRSAWKLVLLGADEEEPQLRVDLDTAD-FGYAVGEVEALVHEEAEVPTALEKIHRLSSMLGVPAQE 207 (234)
T ss_dssp HHHHTCEEEEEEEEEEEEEEEEGGGGCSSSCEEEEEEEEET-TSCEEEEEEEEESSGGGHHHHHHHHHHHHHHHTCCTTC
T ss_pred HhcCCCEEEEEEEEEEEEEEEcccCCccCCCeEEEEEeccc-CCCEEEEEEEEeCCcccchHHHHHHHHHHHHcCCCccc
Confidence 446899999877666555544 5 8999999999 998898885 2 3456788999999999989
Q ss_pred cceehhcc
Q 002965 854 TTKVMSLA 861 (862)
Q Consensus 854 ~~~~~~~~ 861 (862)
.+++|++.
T Consensus 208 ~~~~k~~~ 215 (234)
T 3bhd_A 208 TAPAKLIV 215 (234)
T ss_dssp CCCCHHHH
T ss_pred cchHHHHH
Confidence 99998863
No 443
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.24 E-value=0.03 Score=63.37 Aligned_cols=36 Identities=31% Similarity=0.343 Sum_probs=30.6
Q ss_pred CCCcEEEeecCCCCCCcchhHhhhccceeeeEEeec
Q 002965 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (862)
Q Consensus 514 ~~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislD 549 (862)
...|.=|.+.||+|+|||++|++++..+++.+++++
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~ 247 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLA 247 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 346778889999999999999999999987766654
No 444
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.24 E-value=0.034 Score=64.23 Aligned_cols=37 Identities=24% Similarity=0.382 Sum_probs=29.1
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccce-----eeeEEeeccc
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESY 551 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l-----~~~vislDdf 551 (862)
.++.+|+|+|++||||||++..|+..+ .+.+++.|-|
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~ 140 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTF 140 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 457899999999999999999999655 3667777764
No 445
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.16 E-value=0.019 Score=62.15 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=21.7
Q ss_pred EEEeecCCCCCCcchHHHHhhhce
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L 86 (862)
-++||.|++|||||||.+.|+..+
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 469999999999999999998755
No 446
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.15 E-value=0.032 Score=63.26 Aligned_cols=36 Identities=33% Similarity=0.420 Sum_probs=30.1
Q ss_pred CCCcEEEeecCCCCCCcchhHhhhccceeeeEEeec
Q 002965 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (862)
Q Consensus 514 ~~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislD 549 (862)
-..|.=|.+.||+|+|||++|++++..+++.++.++
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~ 247 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSP 247 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 346778889999999999999999999987766543
No 447
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.15 E-value=0.028 Score=55.63 Aligned_cols=36 Identities=22% Similarity=0.221 Sum_probs=28.1
Q ss_pred EEEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
.-|.|+|+||+||||+|..|.+. |..+++-|.....
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r-G~~lvaDD~v~i~ 52 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR-GHQLVCDDVIDLK 52 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT-TCEEEESSEEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc-CCeEecCCEEEEE
Confidence 35778999999999999999874 7777766655543
No 448
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.15 E-value=0.026 Score=59.80 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.6
Q ss_pred EEEeecCCCCCCcchHHHHhhhce
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L 86 (862)
+.|||.|++|||||||.+.|+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 679999999999999999998643
No 449
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.14 E-value=0.025 Score=58.46 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=21.2
Q ss_pred CcEEEeecCCCCCCcchhHhhhcccee
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
+..+|.|.|++||||||+++.|++.++
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457888999999999999999999874
No 450
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.14 E-value=0.028 Score=59.40 Aligned_cols=23 Identities=43% Similarity=0.696 Sum_probs=20.9
Q ss_pred EEeecCCCCCCcchHHHHhhhce
Q 002965 64 TVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~L 86 (862)
++||.|++|||||||.+.|+..+
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999998754
No 451
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.14 E-value=0.037 Score=55.52 Aligned_cols=36 Identities=31% Similarity=0.361 Sum_probs=26.7
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccce--eeeEEeecc
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIV--GCEVVSLES 550 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l--~~~vislDd 550 (862)
..--+++|.|++|||||||+..|+..- ++.+++.+.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 344689999999999999999997622 244555544
No 452
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.13 E-value=0.047 Score=66.75 Aligned_cols=58 Identities=24% Similarity=0.345 Sum_probs=40.6
Q ss_pred eeEEecc--ceehhhHHHHHHHHh------------cCCeEEEeecCCCCCCcchHHHHhhhceeeEEEeec
Q 002965 37 VHASFDH--GYYLLVKSIQELREK------------KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (862)
Q Consensus 37 ~~~s~~~--~y~~l~~~i~~~~~~------------~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D 94 (862)
..++|++ ++....+.+...... -..+.-|.|.|++||||||+|+.|+..++..++..+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~ 270 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 3567777 555555555444321 133456999999999999999999998886655444
No 453
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.12 E-value=0.027 Score=62.65 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=21.9
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-+++|.||+|||||||.+.|+..+
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 478999999999999999999866
No 454
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.11 E-value=0.027 Score=61.87 Aligned_cols=33 Identities=30% Similarity=0.446 Sum_probs=27.2
Q ss_pred cEEEeecCCCCCCcchhHhhhccceeeeEEeec
Q 002965 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~~~vislD 549 (862)
+.-|.+.||+|+|||++|+.|++.++..++..+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~ 83 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMAD 83 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEec
Confidence 445777999999999999999998886666554
No 455
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.09 E-value=0.029 Score=57.34 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=24.0
Q ss_pred CcEEEeecCCCCCCcchhHhhhcccee
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
+..+|.|.|++||||||+++.|++.|+
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 357889999999999999999998874
No 456
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.08 E-value=0.042 Score=56.05 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=20.4
Q ss_pred EEEeecCCCCCCcchHHHHhhh
Q 002965 63 VTVGIGGPSGSGKTSLAEKLAS 84 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~ 84 (862)
-+++|.|++||||||++..++.
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4799999999999999999986
No 457
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.03 E-value=0.027 Score=60.40 Aligned_cols=24 Identities=29% Similarity=0.546 Sum_probs=21.9
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-+++|.||+|||||||.+.|+..+
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 478999999999999999999866
No 458
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.02 E-value=0.029 Score=61.88 Aligned_cols=24 Identities=46% Similarity=0.754 Sum_probs=21.8
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-+++|.||+|||||||.+.|+..+
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 478999999999999999999766
No 459
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.02 E-value=0.031 Score=64.68 Aligned_cols=33 Identities=27% Similarity=0.363 Sum_probs=25.6
Q ss_pred EEEeecCCCCCCcchhHhhhcccee--eeEEeecc
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIVG--CEVVSLES 550 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~--~~vislDd 550 (862)
.+|+|+||+||||||+.+.|...+. ..++..+|
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied 295 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIED 295 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcC
Confidence 3589999999999999999998774 23455444
No 460
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.99 E-value=0.039 Score=59.79 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=22.2
Q ss_pred CcEEEeecCCCCCCcchhHhhhccce
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
+..+++|+|++||||||+.+.|....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 35689999999999999999998643
No 461
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.98 E-value=0.05 Score=62.99 Aligned_cols=33 Identities=30% Similarity=0.447 Sum_probs=28.1
Q ss_pred cEEEeecCCCCCCcchhHhhhccceeeeEEeec
Q 002965 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~~~vislD 549 (862)
+..+.|.||+|+||||+|+.+++.+++.++.++
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~in 109 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQN 109 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 457788999999999999999999887766554
No 462
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.98 E-value=0.03 Score=61.91 Aligned_cols=24 Identities=42% Similarity=0.570 Sum_probs=21.8
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-+++|.||+|||||||.+.|+..+
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 478999999999999999999866
No 463
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=92.97 E-value=0.037 Score=58.65 Aligned_cols=35 Identities=26% Similarity=0.514 Sum_probs=27.5
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEE--Eeeccc
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTL--ISMENY 96 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~v--I~~D~~ 96 (862)
+.-|.|.|++|+|||++|+.+++.++..+ +++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~ 86 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhc
Confidence 44577899999999999999999887554 454444
No 464
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=92.96 E-value=0.043 Score=58.78 Aligned_cols=32 Identities=34% Similarity=0.478 Sum_probs=26.2
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceeeEEE
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLI 91 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI 91 (862)
..+..|.|.|++|+||||+|+.+++.++..++
T Consensus 36 ~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 34456889999999999999999988875543
No 465
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.96 E-value=0.042 Score=63.42 Aligned_cols=38 Identities=37% Similarity=0.502 Sum_probs=30.0
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhce---e--eEEEeecccc
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYR 97 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~L---g--~~vI~~D~~~ 97 (862)
.++.+|+|+|.+||||||++..|+..+ | +.+++.|-+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r 141 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 346799999999999999999999654 3 6778888753
No 466
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.94 E-value=0.036 Score=54.98 Aligned_cols=38 Identities=29% Similarity=0.433 Sum_probs=26.3
Q ss_pred hhHHHHHHHHhcCCeEEEeecCCCCCCcchHHHHhhhce
Q 002965 48 LVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 48 l~~~i~~~~~~~~~~~iIgItG~sGSGKSTlA~~La~~L 86 (862)
.++.+.........+ .+.|.|++|+||||+++.+++.+
T Consensus 25 ~~~~l~~~l~~~~~~-~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 25 VIQRLKGYVERKNIP-HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp HHHHHHHHHHTTCCC-CEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 334444433333222 28999999999999999998865
No 467
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.94 E-value=0.024 Score=58.92 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=24.3
Q ss_pred CcEEEeecCCCCCCcchhHhhhcccee
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
++.+|.|.|++||||||+++.|++.++
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999998875
No 468
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.91 E-value=0.03 Score=61.89 Aligned_cols=24 Identities=42% Similarity=0.646 Sum_probs=21.8
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-+++|.||+|||||||.+.|+..+
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 478999999999999999999866
No 469
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.90 E-value=0.06 Score=65.46 Aligned_cols=59 Identities=24% Similarity=0.357 Sum_probs=43.8
Q ss_pred eeEEecc--ceehhhHHHHHHHH----h--------cCCeEEEeecCCCCCCcchHHHHhhhceeeEEEeecc
Q 002965 37 VHASFDH--GYYLLVKSIQELRE----K--------KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (862)
Q Consensus 37 ~~~s~~~--~y~~l~~~i~~~~~----~--------~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~ 95 (862)
..++|++ ++....+.+.+... . -..|.=|.+.||+|+|||++|+.+|..+|+.++..+.
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~ 271 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLING 271 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEH
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEh
Confidence 4577888 67666666654431 1 1345679999999999999999999999987766554
No 470
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.87 E-value=0.03 Score=61.84 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=21.1
Q ss_pred EEeecCCCCCCcchHHHHhhhce
Q 002965 64 TVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~L 86 (862)
+|+|+||+||||||+.+.+...+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 89999999999999999997755
No 471
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.87 E-value=0.096 Score=56.73 Aligned_cols=32 Identities=28% Similarity=0.271 Sum_probs=25.7
Q ss_pred CcEEEeecCCCCCCcchhHhhhccce-eeeEEe
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIV-GCEVVS 547 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l-~~~vis 547 (862)
.+.-|.|.||+|+|||++|+.++..+ +..+++
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~ 76 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFS 76 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEE
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcCCCcEEE
Confidence 34667889999999999999999887 544443
No 472
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.86 E-value=0.032 Score=61.75 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.6
Q ss_pred EEEeecCCCCCCcchHHHHhhhce
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L 86 (862)
-++||.|++|||||||.+.|+..+
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 469999999999999999998755
No 473
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.85 E-value=0.066 Score=53.88 Aligned_cols=35 Identities=37% Similarity=0.415 Sum_probs=27.3
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhce----eeEEEeec
Q 002965 60 GGIVTVGIGGPSGSGKTSLAEKLASVI----GCTLISME 94 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~L----g~~vI~~D 94 (862)
.++.+|+|+|.+||||||++..|+..+ .+.+++.|
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d 66 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGD 66 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECS
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecC
Confidence 456789999999999999999998653 24556544
No 474
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.84 E-value=0.032 Score=62.50 Aligned_cols=35 Identities=34% Similarity=0.556 Sum_probs=29.8
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccceeeeEEeec
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislD 549 (862)
..|.=|.+.||+|+|||++|++++..+++.+++++
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~ 214 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVS 214 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEE
Confidence 45667888999999999999999999987776654
No 475
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.83 E-value=0.032 Score=61.97 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.8
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-+++|.||+|||||||.+.|+..+
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 478999999999999999999866
No 476
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=92.79 E-value=0.057 Score=61.45 Aligned_cols=33 Identities=36% Similarity=0.579 Sum_probs=27.2
Q ss_pred EEEeecCCCCCCcchHHHHhhhcee--eEEEeecc
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVIG--CTLISMEN 95 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg--~~vI~~D~ 95 (862)
.-|.+.||+|+|||++|+.+++.+| +.++..+.
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~ 98 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVG 98 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeH
Confidence 4588899999999999999999888 66555443
No 477
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.77 E-value=0.033 Score=61.86 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.7
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-+++|.||+|||||||.+.|+..+
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 378999999999999999999766
No 478
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.75 E-value=0.03 Score=61.79 Aligned_cols=24 Identities=42% Similarity=0.387 Sum_probs=21.6
Q ss_pred EEEeecCCCCCCcchHHHHhhhce
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L 86 (862)
-+++|.||+|||||||.+.++..+
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 369999999999999999998755
No 479
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=92.75 E-value=0.058 Score=61.25 Aligned_cols=56 Identities=23% Similarity=0.300 Sum_probs=37.0
Q ss_pred eeEEecc--ceehhhHHHHHHHH-----------hcCCeEEEeecCCCCCCcchHHHHhhhce-eeEEEe
Q 002965 37 VHASFDH--GYYLLVKSIQELRE-----------KKGGIVTVGIGGPSGSGKTSLAEKLASVI-GCTLIS 92 (862)
Q Consensus 37 ~~~s~~~--~y~~l~~~i~~~~~-----------~~~~~~iIgItG~sGSGKSTlA~~La~~L-g~~vI~ 92 (862)
..++|++ +.....+.+..... ....+.-|.|.||+|+|||++|+.++..+ +..++.
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~ 198 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFS 198 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEE
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEE
Confidence 3566777 44445555543321 11234568899999999999999999988 655443
No 480
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.74 E-value=0.026 Score=62.34 Aligned_cols=28 Identities=46% Similarity=0.526 Sum_probs=23.9
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeE
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVIGCT 89 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~ 89 (862)
...++|.|++|||||||++.|+..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3568999999999999999999876543
No 481
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.74 E-value=0.048 Score=58.59 Aligned_cols=35 Identities=31% Similarity=0.517 Sum_probs=28.6
Q ss_pred cEEEeecCCCCCCcchhHhhhccce-----eeeEEeeccc
Q 002965 517 PVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESY 551 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l-----~~~vislDdf 551 (862)
+.+|++.|++||||||++..|+..+ .+.+++.|-+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 7789999999999999999999766 2556666644
No 482
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.72 E-value=0.06 Score=58.91 Aligned_cols=38 Identities=18% Similarity=0.471 Sum_probs=29.9
Q ss_pred cCCCcEEEeecCCCCCCcchhHhhhccce-----eeeEEeecc
Q 002965 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLES 550 (862)
Q Consensus 513 ~~~~p~iIgI~G~sGSGKTTla~~L~~~l-----~~~vislDd 550 (862)
...+..+|+|.|++|+||||+++.|+..+ .+.+++.|-
T Consensus 52 ~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 52 YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp GCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred ccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 34567899999999999999999998654 255666654
No 483
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.72 E-value=0.035 Score=55.97 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.6
Q ss_pred EEEeecCCCCCCcchHHHHhhhc
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASV 85 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~ 85 (862)
-+++|.|++||||||+++.++..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999853
No 484
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.70 E-value=0.036 Score=61.23 Aligned_cols=34 Identities=29% Similarity=0.430 Sum_probs=27.9
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeecc
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~ 95 (862)
+.-|.+.|++|+||||+|+.|++.++..++..+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~ 105 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDA 105 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecc
Confidence 3458899999999999999999998866655543
No 485
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.69 E-value=0.036 Score=62.94 Aligned_cols=34 Identities=32% Similarity=0.535 Sum_probs=29.3
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeecc
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~ 95 (862)
+.-|.+.||+|+||||+|+.||+.+++..+..|.
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~ 83 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCCceeecc
Confidence 3458899999999999999999999987777664
No 486
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.67 E-value=0.068 Score=68.85 Aligned_cols=23 Identities=35% Similarity=0.626 Sum_probs=21.2
Q ss_pred EEeecCCCCCCcchHHHHhhhce
Q 002965 64 TVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~L 86 (862)
.|||+|++||||||+++.|...+
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCc
Confidence 59999999999999999998755
No 487
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.67 E-value=0.027 Score=62.18 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=23.0
Q ss_pred EEEeecCCCCCCcchhHhhhccceee
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIVGC 543 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~ 543 (862)
..++|.|++|||||||++.|+..+..
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46899999999999999999987654
No 488
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.66 E-value=0.04 Score=62.59 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=30.3
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccceeeeEEeec
Q 002965 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislD 549 (862)
..|.=|.+.||+|+|||++|++++..+++.+++++
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs 275 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTDATFIRVI 275 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEE
Confidence 46778889999999999999999999987766654
No 489
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.65 E-value=0.035 Score=59.06 Aligned_cols=24 Identities=38% Similarity=0.476 Sum_probs=22.1
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002965 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
..|.+.||+|+||||+|+.|+..+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 478899999999999999999876
No 490
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=92.64 E-value=0.059 Score=61.31 Aligned_cols=34 Identities=32% Similarity=0.482 Sum_probs=27.7
Q ss_pred CcEEEeecCCCCCCcchhHhhhcccee--eeEEeec
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIVG--CEVVSLE 549 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~--~~vislD 549 (862)
.+.-|.+.||+|+|||++|+.++..++ +.++.++
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~ 97 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMV 97 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEe
Confidence 445677899999999999999999887 5555544
No 491
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.64 E-value=0.036 Score=56.60 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.3
Q ss_pred CcEEEeecCCCCCCcchhHhhhcc
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMAN 539 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~ 539 (862)
.--+++|.||+|||||||+..|+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 346899999999999999999886
No 492
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.63 E-value=0.034 Score=59.97 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=26.7
Q ss_pred eEEEeecCCCCCCcchHHHHhhhce---e--eEEEeeccc
Q 002965 62 IVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENY 96 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L---g--~~vI~~D~~ 96 (862)
...+.|.|++|+||||+++.++..+ + +..++++++
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 3458899999999999999999866 4 344555544
No 493
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=92.62 E-value=0.048 Score=58.37 Aligned_cols=30 Identities=37% Similarity=0.494 Sum_probs=24.4
Q ss_pred CcEEEeecCCCCCCcchhHhhhccceeeeE
Q 002965 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEV 545 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~~~v 545 (862)
.+..|.|.||+|+||||+|+.++..++..+
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~ 66 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 344567799999999999999998877544
No 494
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.61 E-value=0.067 Score=58.78 Aligned_cols=36 Identities=22% Similarity=0.545 Sum_probs=28.2
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhce-----eeEEEeeccc
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVI-----GCTLISMENY 96 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~L-----g~~vI~~D~~ 96 (862)
...+|+|+|++|||||||.+.|...+ .+.|+..|-.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 36899999999999999999998643 2566666643
No 495
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.58 E-value=0.047 Score=58.59 Aligned_cols=36 Identities=31% Similarity=0.217 Sum_probs=28.8
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhcee-----eEEEeeccc
Q 002965 61 GIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENY 96 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~ 96 (862)
++.+|+|+|++||||||++..|+..+. +.++++|-.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcc
Confidence 457899999999999999999987552 566777654
No 496
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.56 E-value=0.055 Score=53.84 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.5
Q ss_pred EEEeecCCCCCCcchHHHHhhhce
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L 86 (862)
..|.|.|++|+||||+|+.++..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999998755
No 497
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.55 E-value=0.034 Score=59.63 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.6
Q ss_pred EEEeecCCCCCCcchHHHHhhhce
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L 86 (862)
-++||.|++|||||||.+.|+..+
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 369999999999999999998755
No 498
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.54 E-value=0.029 Score=61.99 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=22.0
Q ss_pred EEEeecCCCCCCcchHHHHhhhcee
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVIG 87 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg 87 (862)
.+|+|+|++||||||+.+.|...+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3699999999999999999987653
No 499
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.54 E-value=0.074 Score=58.14 Aligned_cols=28 Identities=36% Similarity=0.665 Sum_probs=24.0
Q ss_pred cCCeEEEeecCCCCCCcchHHHHhhhce
Q 002965 59 KGGIVTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~~L 86 (862)
-.+..+|||+|++||||||+.+.|...+
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4556789999999999999999998644
No 500
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.54 E-value=0.037 Score=61.55 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=21.7
Q ss_pred EEEeecCCCCCCcchHHHHhhhce
Q 002965 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L 86 (862)
-+++|.||+|||||||.+.|+..+
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 369999999999999999998755
Done!