Query 002966
Match_columns 862
No_of_seqs 331 out of 980
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 08:20:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002966.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002966hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jo0_A Hypothetical protein HI 99.9 2.6E-26 8.8E-31 209.2 12.5 89 253-341 2-90 (98)
2 1rq8_A Conserved hypothetical 99.9 6E-26 2.1E-30 208.8 13.2 96 691-791 1-96 (104)
3 1rq8_A Conserved hypothetical 99.9 5.9E-26 2E-30 208.8 12.9 88 253-340 1-88 (104)
4 1jo0_A Hypothetical protein HI 99.9 1.4E-25 4.8E-30 204.3 13.2 88 691-782 2-89 (98)
5 3ka5_A Ribosome-associated pro 63.5 18 0.0006 31.0 6.6 51 296-346 1-54 (65)
6 3k2t_A LMO2511 protein; lister 46.5 19 0.00065 30.0 3.9 49 296-344 1-52 (57)
7 3lyv_A Ribosome-associated fac 41.4 21 0.00072 30.6 3.5 51 296-346 2-55 (66)
8 1ik9_A DNA repair protein XRCC 25.2 48 0.0016 33.9 3.7 42 808-849 139-180 (213)
9 2e6x_A TT1592, hypothetical pr 21.2 38 0.0013 29.2 1.7 17 315-331 3-19 (69)
10 3p04_A Uncharacterized BCR; SE 20.7 2.9E+02 0.0098 24.7 7.3 56 724-784 19-77 (87)
No 1
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=99.93 E-value=2.6e-26 Score=209.19 Aligned_cols=89 Identities=22% Similarity=0.339 Sum_probs=87.1
Q ss_pred CCCHHHHHHHHhhhcCCCCeEEeCCCCcCHHHHHHHHHHHHhCCeEEEEecCCChhhHHHHHHHHHHHhCCeEEEEECcE
Q 002966 253 TLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTA 332 (862)
Q Consensus 253 tLt~kErr~LR~lAh~LkpvV~IGK~GlTq~Vv~eI~~awe~~ELVKIKv~g~~~~dmk~~ae~Le~kTGgeVIqrIG~~ 332 (862)
+||++|+++||++||+|+|+|+|||+|||++|+++|+++|++||||||+|++++..+++++|++|+++|||++||+||++
T Consensus 2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG~~ 81 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIGHI 81 (98)
T ss_dssp CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEETTE
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCC
Q 002966 333 VSLYRGVSY 341 (862)
Q Consensus 333 iVLYRg~~Y 341 (862)
+||||++.-
T Consensus 82 ~vLyR~~~~ 90 (98)
T 1jo0_A 82 LVLYRPSEE 90 (98)
T ss_dssp EEEECCCSS
T ss_pred EEEEccCCC
Confidence 999999844
No 2
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=99.93 E-value=6e-26 Score=208.77 Aligned_cols=96 Identities=23% Similarity=0.419 Sum_probs=89.8
Q ss_pred CCCHHHHHHHHhhccCCCceEEeCCCCCCHHHHHHHHHHHHhCCeEEEEEcCCCHHHHHHHHHHHHHHhCCEEEeccccc
Q 002966 691 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKIS 770 (862)
Q Consensus 691 ~LT~eER~~LRklahkmKpvV~IGK~GVtdgVIeeIh~hwk~hELVKVkv~~~~~~d~~eiae~Le~~SGg~lVqV~k~~ 770 (862)
|||++||++||++||+|+|+|+||++|||++|+++|+++|++||||||+|.+++.++++++|++||+.|||++|| +
T Consensus 1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq----~ 76 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQ----V 76 (104)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEE----E
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEE----E
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred cCcEEEEEecCCCCCCCCCCC
Q 002966 771 KGYAMVVYRGKDYQRPSTLRP 791 (862)
Q Consensus 771 IG~~iILYRgknY~~P~~l~P 791 (862)
||+++||||++. ..|..-.|
T Consensus 77 IG~~~VLYR~~~-~~~~i~~~ 96 (104)
T 1rq8_A 77 IGSMIVIYRESK-ENKEIELP 96 (104)
T ss_dssp ETTEEEEEECCC-SCCSCCCC
T ss_pred ECCEEEEEeCCC-CCCceecc
Confidence 999999999876 44444334
No 3
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=99.93 E-value=5.9e-26 Score=208.82 Aligned_cols=88 Identities=18% Similarity=0.316 Sum_probs=86.8
Q ss_pred CCCHHHHHHHHhhhcCCCCeEEeCCCCcCHHHHHHHHHHHHhCCeEEEEecCCChhhHHHHHHHHHHHhCCeEEEEECcE
Q 002966 253 TLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTA 332 (862)
Q Consensus 253 tLt~kErr~LR~lAh~LkpvV~IGK~GlTq~Vv~eI~~awe~~ELVKIKv~g~~~~dmk~~ae~Le~kTGgeVIqrIG~~ 332 (862)
|||++|+++||++||+|+|+|+|||+|||++|+++|+++|++||||||+|++++..+++++|++|+++|||++||+||++
T Consensus 1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~IG~~ 80 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVIGSM 80 (104)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEETTE
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCC
Q 002966 333 VSLYRGVS 340 (862)
Q Consensus 333 iVLYRg~~ 340 (862)
+||||+++
T Consensus 81 ~VLYR~~~ 88 (104)
T 1rq8_A 81 IVIYRESK 88 (104)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 99999986
No 4
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=99.93 E-value=1.4e-25 Score=204.33 Aligned_cols=88 Identities=19% Similarity=0.374 Sum_probs=86.0
Q ss_pred CCCHHHHHHHHhhccCCCceEEeCCCCCCHHHHHHHHHHHHhCCeEEEEEcCCCHHHHHHHHHHHHHHhCCEEEeccccc
Q 002966 691 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKIS 770 (862)
Q Consensus 691 ~LT~eER~~LRklahkmKpvV~IGK~GVtdgVIeeIh~hwk~hELVKVkv~~~~~~d~~eiae~Le~~SGg~lVqV~k~~ 770 (862)
+||++||++||++||+|+|+|+||++|||++|+++|+.||++||||||+|.+++.++++++|++||+.|||++|| +
T Consensus 2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq----~ 77 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQ----T 77 (98)
T ss_dssp CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEE----E
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEE----E
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred cCcEEEEEecCC
Q 002966 771 KGYAMVVYRGKD 782 (862)
Q Consensus 771 IG~~iILYRgkn 782 (862)
||+++||||++.
T Consensus 78 IG~~~vLyR~~~ 89 (98)
T 1jo0_A 78 IGHILVLYRPSE 89 (98)
T ss_dssp ETTEEEEECCCS
T ss_pred ECCEEEEEccCC
Confidence 999999999874
No 5
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=63.49 E-value=18 Score=31.05 Aligned_cols=51 Identities=12% Similarity=0.117 Sum_probs=44.4
Q ss_pred CeEEEEecCCChhhHHHHHHHHHHHhCCeEEEEE---CcEEEEeeCCCCCCchh
Q 002966 296 EIVRLKIEGAPALNMKRMHEILERKTGGLVIWRS---GTAVSLYRGVSYEVPSV 346 (862)
Q Consensus 296 ELVKIKv~g~~~~dmk~~ae~Le~kTGgeVIqrI---G~~iVLYRg~~Y~~P~v 346 (862)
++|+.|-....+.+.++++.+|+-.-.--+|.++ |.+-|+||.++..+.-+
T Consensus 1 ~iVr~K~~~~kpMsveEAv~qmel~gh~F~vF~n~etg~~nVVYRR~dG~yGlI 54 (65)
T 3ka5_A 1 EIVKTKRFAIKPMSEEEAVLEMELLGHNFFVFQNGDSNEVNVVYKRKDGNYGLI 54 (65)
T ss_dssp CEEEEECSCCSCBCHHHHHHHHHHHTCSEEEEEETTTTEEEEEEECTTSCEEEE
T ss_pred CeEEEEeecCCCCCHHHHHHHHHhCCCcEEEEEeCCCCCEEEEEEeCCCCEEEE
Confidence 5788998888999999999999988778888888 88999999999887543
No 6
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=46.51 E-value=19 Score=29.97 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=38.4
Q ss_pred CeEEEEecCCChhhHHHHHHHHHHHhCCeEEEEE---CcEEEEeeCCCCCCc
Q 002966 296 EIVRLKIEGAPALNMKRMHEILERKTGGLVIWRS---GTAVSLYRGVSYEVP 344 (862)
Q Consensus 296 ELVKIKv~g~~~~dmk~~ae~Le~kTGgeVIqrI---G~~iVLYRg~~Y~~P 344 (862)
++|+.|-....+.+.++++.+|+-.-.--+|.++ |.+-|+||.++..+.
T Consensus 1 ~ivr~K~~~~kpmsveEAv~qmel~gh~F~vF~n~~t~~~nVvYrR~dG~yG 52 (57)
T 3k2t_A 1 EIVRTKQFSLKPMDSEEAVLQMNLLGHSFYVYTDAETNGTNIVYSRKDGKYG 52 (57)
T ss_dssp CCCCCCC---CCBCHHHHHHHHHHHTCSEEEEEBSSSCCEEEEEECTTSCEE
T ss_pred CeEEEEeccCCCCCHHHHHHHHHhCCCcEEEEEcCCCCCEEEEEEeCCCCEE
Confidence 4566676677888999999999988778888877 889999999988764
No 7
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=41.42 E-value=21 Score=30.63 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=42.3
Q ss_pred CeEEEEecCCChhhHHHHHHHHHHHhCCeEEEEE---CcEEEEeeCCCCCCchh
Q 002966 296 EIVRLKIEGAPALNMKRMHEILERKTGGLVIWRS---GTAVSLYRGVSYEVPSV 346 (862)
Q Consensus 296 ELVKIKv~g~~~~dmk~~ae~Le~kTGgeVIqrI---G~~iVLYRg~~Y~~P~v 346 (862)
++|+.|-....+.+.++++.+++-.-.--+|.++ |.+-|+||.++..+.-+
T Consensus 2 ~iVr~K~~~~kpMsveEAv~qMel~gh~F~vF~n~etg~~nVVYRR~dG~yGlI 55 (66)
T 3lyv_A 2 QVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDSEDGATNILYRREDGNLGLI 55 (66)
T ss_dssp CCCCCCCCCCCEECHHHHHHHHHTTTCSEEEEEETTTCSEEEEEECTTSSEEEE
T ss_pred eEEEEEEccCCCCCHHHHHHHHHcCCCcEEEEEeCCCCCEEEEEEECCCCEEEE
Confidence 4677777778889999999999987777778887 88999999999887543
No 8
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=25.22 E-value=48 Score=33.93 Aligned_cols=42 Identities=21% Similarity=0.303 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchHHHHhh
Q 002966 808 QRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKL 849 (862)
Q Consensus 808 qr~~~l~~~i~~l~~~i~~l~~~l~~~~~~~~~~d~~~~~~~ 849 (862)
++...|......|+..+.+|++|++++-..|+.-+.+||.++
T Consensus 139 ~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF 180 (213)
T 1ik9_A 139 AKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRF 180 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777788899999999999999999999999999986
No 9
>2e6x_A TT1592, hypothetical protein TTHA1281; unknown function protein, NPPSFA, national project on protei structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=21.22 E-value=38 Score=29.19 Aligned_cols=17 Identities=35% Similarity=0.642 Sum_probs=14.6
Q ss_pred HHHHHHhCCeEEEEECc
Q 002966 315 EILERKTGGLVIWRSGT 331 (862)
Q Consensus 315 e~Le~kTGgeVIqrIG~ 331 (862)
+.+-+++|+.+|||||.
T Consensus 3 ~d~L~~LG~~LvWRiGk 19 (69)
T 2e6x_A 3 KDLLDKLGQHLVWRMGR 19 (69)
T ss_dssp HHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHhceeEEeecc
Confidence 45677899999999997
No 10
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=20.71 E-value=2.9e+02 Score=24.68 Aligned_cols=56 Identities=7% Similarity=-0.014 Sum_probs=48.2
Q ss_pred HHHHHHHHhCCeEEEEEcCCCHHHHHHHHHHHHH---HhCCEEEeccccccCcEEEEEecCCCC
Q 002966 724 ENMHLHWKYRELVKIIVKVKTFDQAKKIALALEA---ESGGVLVSVDKISKGYAMVVYRGKDYQ 784 (862)
Q Consensus 724 eeIh~hwk~hELVKVkv~~~~~~d~~eiae~Le~---~SGg~lVqV~k~~IG~~iILYRgknY~ 784 (862)
.+|-++|+....|-|.+.+-+.++.+.+.+.++- ..+|.+.. +|+.+.|+=++|..
T Consensus 19 ~~I~d~Lr~~~~VvvNL~~ld~~~AqRivDF~sG~~yal~G~i~k-----I~~~IFl~~P~~V~ 77 (87)
T 3p04_A 19 QVIGGAFRDGDAVVFDMSLLSREEARRIVDFAAGLCFALHGKMQK-----IDSVTFAVVPELSN 77 (87)
T ss_dssp HHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHHHHHTTCEEEE-----EETTEEEEECCCCC
T ss_pred HHHHHHHHCCCEEEEECCCCCHHHHHHHHHHhccceEEeccEEEE-----EcCCEEEEECCCeE
Confidence 5788999999999999999999999999998875 67999888 68888888887754
Done!