BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002970
(862 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5YDB6|CPL1_ARATH RNA polymerase II C-terminal domain phosphatase-like 1
OS=Arabidopsis thaliana GN=CPL1 PE=1 SV=1
Length = 967
Score = 1126 bits (2912), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 570/866 (65%), Positives = 673/866 (77%), Gaps = 21/866 (2%)
Query: 1 MPLGLTEELHLVAMYSRNNEKQYPCFWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIV 60
M LG EELHLVAMYS N + PCFWAFSV G+Y+SCL MLNLRCLGIVFDLDETL+V
Sbjct: 110 MLLG-GEELHLVAMYSENIKNDRPCFWAFSVAPGIYDSCLVMLNLRCLGIVFDLDETLVV 168
Query: 61 ANTMRSFEDRIEALLRKISTEVDPQRIAGMQAEVKRYQDDKNILKQYAENDQVNENGKVI 120
ANTMRSFED+I+ R+I+ E+DPQR+A + AE+KRYQDDKN+LKQY E+DQV ENG+VI
Sbjct: 169 ANTMRSFEDKIDGFQRRINNEMDPQRLAVIVAEMKRYQDDKNLLKQYIESDQVVENGEVI 228
Query: 121 KVQSEVVPALSDSHQALVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTA 180
KVQSE+VPALSD+HQ LVRPLIRLQEKNIILTRINP IRDTSVLVR+RP+WE+LRSYLTA
Sbjct: 229 KVQSEIVPALSDNHQPLVRPLIRLQEKNIILTRINPMIRDTSVLVRMRPSWEELRSYLTA 288
Query: 181 RGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDG 240
+GRKRFEVYVCTMAERDYALEMWRLLDPE NLINT +LL RIVCVKSG +KSLFNVF DG
Sbjct: 289 KGRKRFEVYVCTMAERDYALEMWRLLDPEGNLINTNDLLARIVCVKSGFKKSLFNVFLDG 348
Query: 241 TCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRG 300
TCHPKMALVIDDRLKVWD+KDQPRVHVVPAFAPYY+PQAEA A PVLCVARN+AC VRG
Sbjct: 349 TCHPKMALVIDDRLKVWDEKDQPRVHVVPAFAPYYSPQAEA-AATPVLCVARNVACGVRG 407
Query: 301 GFFKEFDEGLLQRIPEISYEDDVKDIPSPPDVSNYLVSEDDAATANGIKDPLSFDGMADA 360
GFF++FD+ LL RI EISYE+D +DIPSPPDVS+YLVSEDD + NG KDPLSFDGMAD
Sbjct: 408 GFFRDFDDSLLPRIAEISYENDAEDIPSPPDVSHYLVSEDDTSGLNGNKDPLSFDGMADT 467
Query: 361 EVERRLKEAIAASATISSAVANLDPRL-APFQYTM---------PSSSSTTTLPTSQAAV 410
EVERRLKEAI+AS+ + A AN+DPR+ AP Q+ M A
Sbjct: 468 EVERRLKEAISASSAVLPA-ANIDPRIAAPVQFPMASASSVSVPVPVQVVQQAIQPSAMA 526
Query: 411 MPLANMQFPPA-TSLVKPLGHVGPPEQSLQSSPAREEGEVPESELDPDTRRRLLILQHGM 469
P Q P TS+ K H+ P E SLQSSPAREEGEVPESELDPDTRRRLLILQHG
Sbjct: 527 FPSIPFQQPQQPTSIAK---HLVPSEPSLQSSPAREEGEVPESELDPDTRRRLLILQHGQ 583
Query: 470 DTRENAPSEAPFPARTQMQVSVPRVPSRGSWFPVEEEMSPRQLNRAVPKEFPLNSEAMQI 529
DTR+ APSE FP R +Q V SR WFPVEEEM P Q+ RAV KE+PL+SE + +
Sbjct: 584 DTRDPAPSEPSFPQRPPVQAPPSHVQSRNGWFPVEEEMDPAQIRRAVSKEYPLDSEMIHM 643
Query: 530 EKHRPPHPSFFPKIENPSTSDRP-HENQRMPKEALRRDDRLRLNHTLSDYQSFSGEEIPL 588
EKHRP HPSFF KI+N + SDR HEN+R PKE+LRRD++LR N+ L D F GE+
Sbjct: 644 EKHRPRHPSFFSKIDNSTQSDRMLHENRRPPKESLRRDEQLRSNNNLPDSHPFYGEDASW 703
Query: 589 SRSSSSSRDVDFESGRDVSSTETPSGVLQDIAMKCGTKVEFRPALVASTELQFSIEAWFA 648
++SSS + D+DF R VS+TET + VL IA+KCG KVE++P+LV+ST+L+FS+EAW +
Sbjct: 704 NQSSSRNSDLDFLPERSVSATETSADVLHGIAIKCGAKVEYKPSLVSSTDLRFSVEAWLS 763
Query: 649 GEKIGEGIGRTRREAQRQAAEGSIKHLANVYMLRVKSDSGSGHGDGSRFSNANENCFMGE 708
+KIGEGIG++RREA +AAE SI++LA+ YM R D G H D + F+ NEN MG
Sbjct: 764 NQKIGEGIGKSRREALHKAAEASIQNLADGYM-RANGDPGPSHRDATPFT--NENISMGN 820
Query: 709 INSFGGQPLAKDESLSSEPSKLVDPRLEGSKKLMGSVSALKELCMTEGLGVVFQQQPPSS 768
N+ QP A+DE+ S+ DPRLEGS + GS++AL+ELC +EGL + FQ Q
Sbjct: 821 ANALNNQPFARDETALPVSSRPTDPRLEGSMRHTGSITALRELCASEGLEMAFQSQRQLP 880
Query: 769 ANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRSMFGQFPQKHQGSPRS 828
++ V +DE++AQVEIDG+V+G+G+GSTWDEA+MQAAE+AL S+RSM GQ K QGSPRS
Sbjct: 881 SDMVHRDELHAQVEIDGRVVGEGVGSTWDEARMQAAERALSSVRSMLGQPLHKRQGSPRS 940
Query: 829 LQGMPNKRLKPEFPRVLQRMPPSGRY 854
GM NKRLKP+F R LQRMP SGRY
Sbjct: 941 FGGMSNKRLKPDFQRSLQRMPSSGRY 966
>sp|Q5YDB5|CPL2_ARATH RNA polymerase II C-terminal domain phosphatase-like 2
OS=Arabidopsis thaliana GN=CPL2 PE=1 SV=3
Length = 770
Score = 573 bits (1478), Expect = e-162, Method: Compositional matrix adjust.
Identities = 327/682 (47%), Positives = 422/682 (61%), Gaps = 58/682 (8%)
Query: 7 EELHLVAMYSRNNEKQYPCFWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIVANTMRS 66
EE+HLVAM S+ EK++PCFW FSV SGLY+SCL MLN RCL IVFDLDETLIVANTM+S
Sbjct: 100 EEIHLVAMPSK--EKKFPCFWCFSVPSGLYDSCLRMLNTRCLSIVFDLDETLIVANTMKS 157
Query: 67 FEDRIEALLRKISTEVDPQRIAGMQAEVKRYQDDKNILKQYAENDQVNENGKVIKVQSEV 126
FEDRIEAL IS E+DP RI GM AE+KRY DD+ +LKQY +ND +NG ++K Q E
Sbjct: 158 FEDRIEALKSWISREMDPVRINGMSAELKRYMDDRMLLKQYIDNDYAFDNGVLLKAQPEE 217
Query: 127 VPALSDSHQALVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRF 186
V SD + + RP+IRL EKN +LTRI P+IRDTSVLV+LRPAWE+LRSYLTA+ RKRF
Sbjct: 218 VRPTSDGQEKVCRPVIRLPEKNTVLTRIKPEIRDTSVLVKLRPAWEELRSYLTAKTRKRF 277
Query: 187 EVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKM 246
EVYVCTMAERDYALEMWRLLDPE++LI+ KEL DRIVCVK ++KSL +VF G CHPKM
Sbjct: 278 EVYVCTMAERDYALEMWRLLDPEAHLISLKELRDRIVCVKPDAKKSLLSVFNGGICHPKM 337
Query: 247 ALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEF 306
A+VIDDR+KVW+DKDQPRVHVV A+ PYYAPQAE +P LCVARN+ACNVRG FFKEF
Sbjct: 338 AMVIDDRMKVWEDKDQPRVHVVSAYLPYYAPQAETALVVPHLCVARNVACNVRGYFFKEF 397
Query: 307 DEGLLQRIPEISYEDDVKDIPSPPDVSNYLVSEDDAATANG-IKDPLSFDGMADAEVERR 365
DE L+ I + YEDDV+++P PDVSNY+V ED +NG I P +GM EVERR
Sbjct: 398 DESLMSSISLVYYEDDVENLPPSPDVSNYVVIEDPGFASNGNINAPPINEGMCGGEVERR 457
Query: 366 LKEAIAASATISSAVANLDPRLAPFQYTMPSSSSTTTLPTSQAAVMPLANMQFPPATSLV 425
L +A AA + T+P++S+ P + P + P +
Sbjct: 458 LNQAAAADHS-----------------TLPATSNAEQKPET-----PKPQIAVIPNNAST 495
Query: 426 KPLGHVGPPEQ-SLQSSPAREEGEVPESELDPDTRRRLLILQHGMDTRENAPSEAPFPAR 484
+ P + SL +P R+ + R L+++ G+D R ++ P A+
Sbjct: 496 ATAAALLPSHKPSLLGAPRRDGFTFSDGG-------RPLMMRPGVDIRNQNFNQPPILAK 548
Query: 485 TQMQVSVPRVPSRGSWFPVEEEMSPRQLNRAVPKEFPLNSEAMQIEKHRPPHPSFFPKIE 544
MQ + S G W V++E P FP + +PS FP
Sbjct: 549 IPMQPPSSSMHSPGGWL-VDDENRP---------SFPGRPSGL--------YPSQFPHGT 590
Query: 545 NPSTSDRP--HENQRMPKEALRRDDRLRLNHTLSDYQSFSGEEIPLSRSSSSSRDVDFES 602
S P H + +E DD R N + Q+ G I + S+ R+ +
Sbjct: 591 PGSAPVGPFAHPSHLRSEEVAMDDDLKRQNPS---RQTTEGG-ISQNHLVSNGREHHTDG 646
Query: 603 GR-DVSSTETPSGVLQDIAMKCGTKVEFRPALVASTELQFSIEAWFAGEKIGEGIGRTRR 661
G+ + + LQ+I +CG+KVEFR + + ELQFS+E F GEKIG G+ +T++
Sbjct: 647 GKSNGGQSHLFVSALQEIGRRCGSKVEFRTVISTNKELQFSVEVLFTGEKIGIGMAKTKK 706
Query: 662 EAQRQAAEGSIKHLANVYMLRV 683
+A +QAAE +++ LA Y+ V
Sbjct: 707 DAHQQAAENALRSLAEKYVAHV 728
>sp|Q9Y5B0|CTDP1_HUMAN RNA polymerase II subunit A C-terminal domain phosphatase OS=Homo
sapiens GN=CTDP1 PE=1 SV=3
Length = 961
Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVC 224
RLRP +D + K +E++V T R YA + LDPE L + + +L R C
Sbjct: 223 TRLRPHCKDFLEKIA----KLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHR-ILSRDEC 277
Query: 225 V----KSGSRKSLFNVFQDGTCHPKMALVIDDRLKVW 257
+ K+G+ ++LF C M +IDDR VW
Sbjct: 278 IDPFSKTGNLRNLF------PCGDSMVCIIDDREDVW 308
>sp|Q7TSG2|CTDP1_MOUSE RNA polymerase II subunit A C-terminal domain phosphatase OS=Mus
musculus GN=Ctdp1 PE=1 SV=1
Length = 960
Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 57/127 (44%), Gaps = 19/127 (14%)
Query: 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVC 224
RLRP +D + K +E++V T R YA + LDPE L + + +L R C
Sbjct: 223 TRLRPHCKDFLEKIA----KLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHR-ILSRDEC 277
Query: 225 V----KSGSRKSLFNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAE 280
+ K+G+ ++LF C M +IDDR VW K P + V + Y P
Sbjct: 278 IDPFSKTGNLRNLF------PCGDSMVCIIDDREDVW--KFAPNLITVKKYV--YFPGTG 327
Query: 281 ANNAIPV 287
NA P
Sbjct: 328 DVNAPPA 334
>sp|Q03254|FCP1_YEAST RNA polymerase II subunit A C-terminal domain phosphatase
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=FCP1 PE=1 SV=1
Length = 732
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 17/127 (13%)
Query: 135 QALVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMA 194
+ LV PL+ + + +L P +R V++RP L+ + A+ FE+++ TMA
Sbjct: 219 EELVLPLMYMNDDGSMLRP--PPVRKCWYYVKVRPG---LKEFF-AKVAPLFEMHIYTMA 272
Query: 195 ERDYALEMWRLLDPESNLINTKELLDRIVCVK---SGSRKSLFNVFQDGTCHPKMALVID 251
R YAL++ +++DP L DRI+ S + KSL +F M +VID
Sbjct: 273 TRAYALQIAKIVDPTGELFG-----DRILSRDENGSLTTKSLAKLF---PTDQSMVVVID 324
Query: 252 DRLKVWD 258
DR VW+
Sbjct: 325 DRGDVWN 331
>sp|Q9P376|FCP1_SCHPO RNA polymerase II subunit A C-terminal domain phosphatase
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=fcp1 PE=1 SV=1
Length = 723
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 11/76 (14%)
Query: 186 FEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVK-SGS--RKSLFNVFQDGTC 242
+E+++ TM + YA E+ +++DP L DR++ SGS +KSL +F C
Sbjct: 237 YELHIYTMGTKAYAKEVAKIIDPTGKLFQ-----DRVLSRDDSGSLAQKSLRRLF---PC 288
Query: 243 HPKMALVIDDRLKVWD 258
M +VIDDR VWD
Sbjct: 289 DTSMVVVIDDRGDVWD 304
>sp|Q9N4V4|SCPL3_CAEEL CTD small phosphatase-like protein 3 OS=Caenorhabditis elegans
GN=scpl-3 PE=3 SV=1
Length = 287
Score = 42.7 bits (99), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 8/93 (8%)
Query: 163 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRI 222
V VRLRP LR++L +R K FE+ + T +++ YA ++ +LDP N I + +
Sbjct: 101 VYVRLRP---HLRTFL-SRMAKTFEIIIFTASKKVYANKLCDILDPRKNHIRHRLFREHC 156
Query: 223 VCVKSGSRKSLFNVFQDGTCHPKMALVIDDRLK 255
VCV K L + +D P +++D+ ++
Sbjct: 157 VCVFGNYVKDLTILGRD----PSKTMILDNAVQ 185
>sp|C5D8T6|RNC_GEOSW Ribonuclease 3 OS=Geobacillus sp. (strain WCH70) GN=rnc PE=3 SV=1
Length = 246
Score = 40.0 bits (92), Expect = 0.082, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 9/78 (11%)
Query: 741 LMGSVSALKELCMTEGLGV----VFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTW 796
+M S L+EL +G+GV + +++ P+ E ++V ++GQ LG G+G +
Sbjct: 171 VMDFKSQLQELVQRDGIGVLEYSILEEKGPA-----HNKEFVSRVSLNGQELGIGVGKSK 225
Query: 797 DEAKMQAAEKALGSLRSM 814
EA+ AA+ AL L+++
Sbjct: 226 KEAEQHAAQMALQKLKTI 243
>sp|Q82JT9|RNC_STRAW Ribonuclease 3 OS=Streptomyces avermitilis (strain ATCC 31267 / DSM
46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680)
GN=rnc PE=3 SV=1
Length = 276
Score = 40.0 bits (92), Expect = 0.084, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 729 KLVDPRLEGSKKLMGSV---SALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDG 785
+L DP +E S L + ++L+EL TEGLGV + + + A + G
Sbjct: 157 RLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGV--PEYLVTETGPDHEKTFTAAARVGG 214
Query: 786 QVLGKGIGSTWDEAKMQAAEKALGSLRS 813
G G G + EA+ QAAE A ++RS
Sbjct: 215 VSYGTGTGRSKKEAEQQAAESAWRAIRS 242
>sp|Q5XIK8|CTSL2_RAT CTD small phosphatase-like protein 2 OS=Rattus norvegicus
GN=Ctdspl2 PE=2 SV=1
Length = 465
Score = 38.9 bits (89), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 163 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRI 222
V VRLRP + R +L R + +E+ + T +++ YA ++ +LDP+ L+ + +
Sbjct: 323 VYVRLRPFF---REFL-ERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHC 378
Query: 223 VCVKSGSRKSL 233
VCV+ K L
Sbjct: 379 VCVQGNYIKDL 389
>sp|A4IM67|RNC_GEOTN Ribonuclease 3 OS=Geobacillus thermodenitrificans (strain NG80-2)
GN=rnc PE=3 SV=1
Length = 246
Score = 38.9 bits (89), Expect = 0.16, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
Query: 741 LMGSVSALKELCMTEGLGV----VFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTW 796
+M S L+EL +G G + +++ P+ E A+V ++GQ LG G+G +
Sbjct: 171 VMDFKSQLQELVQRDGSGTLEYAILEEKGPA-----HNKEFVARVALNGQELGVGVGRSK 225
Query: 797 DEAKMQAAEKALGSLRS 813
EA+ AA+ AL +LR+
Sbjct: 226 KEAEQHAAQMALETLRA 242
>sp|Q8BG15|CTSL2_MOUSE CTD small phosphatase-like protein 2 OS=Mus musculus GN=Ctdspl2
PE=1 SV=1
Length = 465
Score = 38.9 bits (89), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 163 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRI 222
V VRLRP + R +L R + +E+ + T +++ YA ++ +LDP+ L+ + +
Sbjct: 323 VYVRLRPFF---REFL-ERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHC 378
Query: 223 VCVKSGSRKSL 233
VCV+ K L
Sbjct: 379 VCVQGNYIKDL 389
>sp|Q05D32|CTSL2_HUMAN CTD small phosphatase-like protein 2 OS=Homo sapiens GN=CTDSPL2
PE=1 SV=2
Length = 466
Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 163 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRI 222
V VRLRP + R +L R + +E+ + T +++ YA ++ +LDP+ L+ + +
Sbjct: 324 VYVRLRPFF---REFL-ERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHC 379
Query: 223 VCVKSGSRKSL 233
VCV+ K L
Sbjct: 380 VCVQGNYIKDL 390
>sp|Q9ZBQ7|RNC_STRCO Ribonuclease 3 OS=Streptomyces coelicolor (strain ATCC BAA-471 /
A3(2) / M145) GN=rnc PE=1 SV=2
Length = 276
Score = 38.9 bits (89), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 729 KLVDPRLEGSKKLMGSV---SALKELCMTEGLGV---VFQQQPPSSANSVQKDEVYAQVE 782
+L DP +E S L + ++L+EL TEGLGV + + P + A
Sbjct: 167 RLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVTETGPDHEKTFT-----AAAR 221
Query: 783 IDGQVLGKGIGSTWDEAKMQAAEKALGSLRS 813
+ G G G G + EA+ QAAE A S+R+
Sbjct: 222 VGGVSYGTGTGRSKKEAEQQAAESAWRSIRA 252
>sp|Q5F3Z7|CTSL2_CHICK CTD small phosphatase-like protein 2 OS=Gallus gallus GN=CTDSPL2
PE=2 SV=2
Length = 466
Score = 38.9 bits (89), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 163 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRI 222
V VRLRP + R +L R + +E+ + T +++ YA ++ +LDP+ L+ + +
Sbjct: 324 VYVRLRPFF---REFL-ERMSQIYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHC 379
Query: 223 VCVKSGSRKSL 233
VCV+ K L
Sbjct: 380 VCVQGNYIKDL 390
>sp|Q5L0Q3|RNC_GEOKA Ribonuclease 3 OS=Geobacillus kaustophilus (strain HTA426) GN=rnc
PE=3 SV=1
Length = 246
Score = 38.5 bits (88), Expect = 0.22, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
Query: 741 LMGSVSALKELCMTEGLGV----VFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTW 796
+M S L+EL +G G + +++ P+ E A+V ++GQ LG G+G +
Sbjct: 171 VMDFKSQLQELVQRDGSGTLEYAILEEKGPA-----HNKEFVARVALNGQELGIGVGRSK 225
Query: 797 DEAKMQAAEKALGSLRS 813
EA+ AA+ AL +LR+
Sbjct: 226 KEAEQHAAQMALETLRA 242
>sp|Q08BB5|CTL2A_DANRE CTD small phosphatase-like protein 2-A OS=Danio rerio GN=ctdspl2a
PE=2 SV=1
Length = 469
Score = 38.5 bits (88), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 163 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRI 222
V VRLRP + R +L R + +E+ + T +++ YA ++ +LDP+ L+ + +
Sbjct: 327 VYVRLRPFF---REFL-ERMSQIYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHC 382
Query: 223 VCVKSGSRKSL 233
VCV+ K L
Sbjct: 383 VCVQGNYIKDL 393
>sp|Q3KQB6|CTL2B_XENLA CTD small phosphatase-like protein 2-B OS=Xenopus laevis
GN=ctdspl2-b PE=2 SV=1
Length = 466
Score = 37.7 bits (86), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 163 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRI 222
V VRLRP + R +L R + +E+ + T +++ YA ++ +LDP+ L+ + +
Sbjct: 324 VYVRLRPFF---REFL-ERMSQIYEIILFTASKKVYADKLLNILDPKKRLVRHRLFREHC 379
Query: 223 VCVKSGSRKSL 233
VCV+ K L
Sbjct: 380 VCVQGNYIKDL 390
>sp|A4QNX6|CTL2B_DANRE CTD small phosphatase-like protein 2-B OS=Danio rerio GN=ctdspl2b
PE=2 SV=1
Length = 460
Score = 37.7 bits (86), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 163 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRI 222
V VRLRP + R +L R + +E+ + T +++ YA ++ +LDP L+ + +
Sbjct: 318 VYVRLRPFF---REFL-ERMSQIYEIILFTASKKVYADKLLNILDPRKQLVRHRLFREHC 373
Query: 223 VCVKSGSRKSL 233
VCV+ K L
Sbjct: 374 VCVQGNYIKDL 384
>sp|Q66KM5|CTSL2_XENTR CTD small phosphatase-like protein 2 OS=Xenopus tropicalis
GN=ctdspl2 PE=2 SV=1
Length = 466
Score = 37.7 bits (86), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 163 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRI 222
V VRLRP + R +L R + +E+ + T +++ YA ++ +LDP+ L+ + +
Sbjct: 324 VYVRLRPFF---REFL-ERMSQIYEIILFTASKKVYADKLLNILDPKKRLVRHRLFREHC 379
Query: 223 VCVKSGSRKSL 233
VCV+ K L
Sbjct: 380 VCVQGNYIKDL 390
>sp|Q801R4|CTL2A_XENLA CTD small phosphatase-like protein 2-A OS=Xenopus laevis
GN=ctdspl2-a PE=2 SV=1
Length = 466
Score = 37.7 bits (86), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 163 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRI 222
V VRLRP + R +L R + +E+ + T +++ YA ++ +LDP+ L+ + +
Sbjct: 324 VYVRLRPFF---REFL-ERMSQIYEIILFTASKKVYADKLLNILDPKKRLVRHRLFREHC 379
Query: 223 VCVKSGSRKSL 233
VCV+ K L
Sbjct: 380 VCVQGNYIKDL 390
>sp|Q00IB6|CPL4_ARATH RNA polymerase II C-terminal domain phosphatase-like 4
OS=Arabidopsis thaliana GN=CPL4 PE=1 SV=1
Length = 440
Score = 37.4 bits (85), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 29/167 (17%)
Query: 163 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRI 222
++ +LRP + S+L + F +Y+ TM +R+YA +M +LLDP+ DR+
Sbjct: 175 MMTKLRPF---VHSFLK-EASEMFVMYIYTMGDRNYARQMAKLLDPKGEYFG-----DRV 225
Query: 223 VCVKSGS---RKSLFNVFQDGTCHPKMALVIDDRLKVW-DDKDQ----PRVHVVPA---- 270
+ G+ KSL V + L++DD W KD R H +
Sbjct: 226 ISRDDGTVRHEKSLDVVLGQESA----VLILDDTENAWPKHKDNLIVIERYHFFSSSCRQ 281
Query: 271 FAPYYAPQAE--ANNAIP--VLCVARNIACNVRGGFFKEFDEGLLQR 313
F Y +E ++ + P L + FF+ DEG+ R
Sbjct: 282 FDHRYKSLSELKSDESEPDGALATVLKVLKQAHALFFENVDEGISNR 328
>sp|Q2YXI3|RNC_STAAB Ribonuclease 3 OS=Staphylococcus aureus (strain bovine RF122 /
ET3-1) GN=rnc PE=3 SV=1
Length = 243
Score = 36.6 bits (83), Expect = 0.89, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 641 FSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANV 678
F+ E GE I EG G+T++E++++AAE + K L +
Sbjct: 205 FTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLKQI 242
>sp|Q8CSB6|Y1287_STAES UPF0271 protein SE_1287 OS=Staphylococcus epidermidis (strain ATCC
12228) GN=SE_1287 PE=3 SV=1
Length = 252
Score = 35.8 bits (81), Expect = 1.4, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 16/101 (15%)
Query: 51 VFDLDETLI---VANTMRSFEDRIEALLRKISTEV--------DPQRIAGMQAEVKRYQD 99
VFD D LI +ANT+ E + L K+++EV D Q ++ + +
Sbjct: 134 VFDFDSNLIFVGLANTLLISEAELVGL--KVASEVFADRRYEDDGQLVSRKKTDATITNT 191
Query: 100 DKNI---LKQYAENDQVNENGKVIKVQSEVVPALSDSHQAL 137
D+ I LK EN V++NGK+I ++++ + D AL
Sbjct: 192 DEAIQQALKMVLENKVVSKNGKIIDLKADTICVHGDGKHAL 232
>sp|Q5HNU6|Y1168_STAEQ UPF0271 protein SERP1168 OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=SERP1168 PE=3 SV=1
Length = 252
Score = 35.8 bits (81), Expect = 1.4, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 16/101 (15%)
Query: 51 VFDLDETLI---VANTMRSFEDRIEALLRKISTEV--------DPQRIAGMQAEVKRYQD 99
VFD D LI +ANT+ E + L K+++EV D Q ++ + +
Sbjct: 134 VFDFDSNLIFVGLANTLLISEAELVGL--KVASEVFADRRYEDDGQLVSRKKTDATITNT 191
Query: 100 DKNI---LKQYAENDQVNENGKVIKVQSEVVPALSDSHQAL 137
D+ I LK EN V++NGK+I ++++ + D AL
Sbjct: 192 DEAIQQALKMVLENKVVSKNGKIIDLKADTICVHGDGKHAL 232
>sp|P66669|RNC_STAAW Ribonuclease 3 OS=Staphylococcus aureus (strain MW2) GN=rnc PE=3
SV=1
Length = 243
Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 641 FSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANV 678
F+ E GE I EG G+T++E++++AAE + K L +
Sbjct: 205 FTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLKQI 242
>sp|A8Z3R9|RNC_STAAT Ribonuclease 3 OS=Staphylococcus aureus (strain USA300 / TCH1516)
GN=rnc PE=3 SV=1
Length = 243
Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 641 FSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANV 678
F+ E GE I EG G+T++E++++AAE + K L +
Sbjct: 205 FTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLKQI 242
>sp|Q6G9Y0|RNC_STAAS Ribonuclease 3 OS=Staphylococcus aureus (strain MSSA476) GN=rnc
PE=3 SV=1
Length = 243
Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 641 FSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANV 678
F+ E GE I EG G+T++E++++AAE + K L +
Sbjct: 205 FTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLKQI 242
>sp|Q6GHK2|RNC_STAAR Ribonuclease 3 OS=Staphylococcus aureus (strain MRSA252) GN=rnc
PE=3 SV=1
Length = 243
Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 641 FSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANV 678
F+ E GE I EG G+T++E++++AAE + K L +
Sbjct: 205 FTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLKQI 242
>sp|P66668|RNC_STAAN Ribonuclease 3 OS=Staphylococcus aureus (strain N315) GN=rnc PE=1
SV=1
Length = 243
Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 641 FSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANV 678
F+ E GE I EG G+T++E++++AAE + K L +
Sbjct: 205 FTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLKQI 242
>sp|A6QGD3|RNC_STAAE Ribonuclease 3 OS=Staphylococcus aureus (strain Newman) GN=rnc PE=3
SV=1
Length = 243
Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 641 FSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANV 678
F+ E GE I EG G+T++E++++AAE + K L +
Sbjct: 205 FTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLKQI 242
>sp|Q5HGJ9|RNC_STAAC Ribonuclease 3 OS=Staphylococcus aureus (strain COL) GN=rnc PE=3
SV=1
Length = 243
Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 641 FSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANV 678
F+ E GE I EG G+T++E++++AAE + K L +
Sbjct: 205 FTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLKQI 242
>sp|A5ISB8|RNC_STAA9 Ribonuclease 3 OS=Staphylococcus aureus (strain JH9) GN=rnc PE=3
SV=1
Length = 243
Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 641 FSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANV 678
F+ E GE I EG G+T++E++++AAE + K L +
Sbjct: 205 FTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLKQI 242
>sp|Q2FZ50|RNC_STAA8 Ribonuclease 3 OS=Staphylococcus aureus (strain NCTC 8325) GN=rnc
PE=3 SV=1
Length = 243
Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 641 FSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANV 678
F+ E GE I EG G+T++E++++AAE + K L +
Sbjct: 205 FTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLKQI 242
>sp|Q2FHK5|RNC_STAA3 Ribonuclease 3 OS=Staphylococcus aureus (strain USA300) GN=rnc PE=3
SV=1
Length = 243
Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 641 FSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANV 678
F+ E GE I EG G+T++E++++AAE + K L +
Sbjct: 205 FTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLKQI 242
>sp|A6U152|RNC_STAA2 Ribonuclease 3 OS=Staphylococcus aureus (strain JH1) GN=rnc PE=3
SV=1
Length = 243
Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 641 FSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANV 678
F+ E GE I EG G+T++E++++AAE + K L +
Sbjct: 205 FTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLKQI 242
>sp|Q931T1|RNC_STAAM Ribonuclease 3 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
GN=rnc PE=3 SV=1
Length = 243
Score = 35.0 bits (79), Expect = 2.9, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 641 FSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANV 678
F+ E GE I EG G+T++E++++AA+ + K L +
Sbjct: 205 FTSEVILQGEAIAEGKGKTKKESEQRAAKSAYKQLKQI 242
>sp|A7X1J9|RNC_STAA1 Ribonuclease 3 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698)
GN=rnc PE=3 SV=1
Length = 243
Score = 35.0 bits (79), Expect = 2.9, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 641 FSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANV 678
F+ E GE I EG G+T++E++++AA+ + K L +
Sbjct: 205 FTSEVILQGEAIAEGKGKTKKESEQRAAKSAYKQLKQI 242
>sp|Q3A4Q8|RNC_PELCD Ribonuclease 3 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd
1) GN=rnc PE=3 SV=1
Length = 232
Score = 34.7 bits (78), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 27/35 (77%)
Query: 641 FSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHL 675
+S+EA F G IG+G GR+++ A++ AA+ ++++L
Sbjct: 196 YSVEAHFRGSCIGQGQGRSKKSAEQAAAKQALEYL 230
>sp|Q47S78|RNC_THEFY Ribonuclease 3 OS=Thermobifida fusca (strain YX) GN=rnc PE=3 SV=1
Length = 240
Score = 34.3 bits (77), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 729 KLVDPRLEGSKKLMGSV---SALKELCMTEGLGV---VFQQQPPSSANSVQKDEVYAQVE 782
+L DP + + L + ++L+EL E LGV V ++ P + + A V
Sbjct: 146 RLFDPLIARASGLGAGLDWKTSLQELTAAELLGVPEYVVEESGPDHQKTFR-----ATVR 200
Query: 783 IDGQVLGKGIGSTWDEAKMQAAEKALGSLRS 813
+ GQ G G G + EA+ QAAE A ++R+
Sbjct: 201 VAGQTYGSGEGRSKKEAEQQAAESAWKAIRA 231
>sp|B2G826|RNC_LACRJ Ribonuclease 3 OS=Lactobacillus reuteri (strain JCM 1112) GN=rnc
PE=3 SV=1
Length = 233
Score = 34.3 bits (77), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 776 EVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRS 813
E V +G V+G+G GS+ A+MQAA++AL ++R+
Sbjct: 193 EFKVNVTANGDVIGEGKGSSKKHAEMQAAQQALDNMRN 230
>sp|A5VKP2|RNC_LACRD Ribonuclease 3 OS=Lactobacillus reuteri (strain DSM 20016) GN=rnc
PE=3 SV=1
Length = 233
Score = 34.3 bits (77), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 776 EVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRS 813
E V +G V+G+G GS+ A+MQAA++AL ++R+
Sbjct: 193 EFKVNVTANGDVIGEGKGSSKKHAEMQAAQQALDNMRN 230
>sp|A0AJR0|RNC_LISW6 Ribonuclease 3 OS=Listeria welshimeri serovar 6b (strain ATCC 35897
/ DSM 20650 / SLCC5334) GN=rnc PE=3 SV=1
Length = 229
Score = 34.3 bits (77), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 779 AQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSL 811
AQV ++GQVLGKG G T +A+ AA+ A+ L
Sbjct: 194 AQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226
>sp|Q8Y691|RNC_LISMO Ribonuclease 3 OS=Listeria monocytogenes serovar 1/2a (strain ATCC
BAA-679 / EGD-e) GN=rnc PE=3 SV=1
Length = 229
Score = 34.3 bits (77), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 779 AQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSL 811
AQV ++GQVLGKG G T +A+ AA+ A+ L
Sbjct: 194 AQVIVNGQVLGKGSGRTKKQAEQSAAQFAINKL 226
>sp|Q71YL2|RNC_LISMF Ribonuclease 3 OS=Listeria monocytogenes serotype 4b (strain F2365)
GN=rnc PE=3 SV=1
Length = 229
Score = 34.3 bits (77), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 779 AQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSL 811
AQV ++GQVLGKG G T +A+ AA+ A+ L
Sbjct: 194 AQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226
>sp|C1KWA4|RNC_LISMC Ribonuclease 3 OS=Listeria monocytogenes serotype 4b (strain
CLIP80459) GN=rnc PE=3 SV=1
Length = 229
Score = 34.3 bits (77), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 779 AQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSL 811
AQV ++GQVLGKG G T +A+ AA+ A+ L
Sbjct: 194 AQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226
>sp|Q92AK3|RNC_LISIN Ribonuclease 3 OS=Listeria innocua serovar 6a (strain CLIP 11262)
GN=rnc PE=3 SV=1
Length = 229
Score = 33.9 bits (76), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 779 AQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSL 811
AQV ++GQVLGKG G T +A+ AA+ A+ L
Sbjct: 194 AQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226
>sp|B8DDU8|RNC_LISMH Ribonuclease 3 OS=Listeria monocytogenes serotype 4a (strain HCC23)
GN=rnc PE=3 SV=1
Length = 229
Score = 33.9 bits (76), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 779 AQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSL 811
AQV ++GQVLGKG G T +A+ AA+ A+ L
Sbjct: 194 AQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226
>sp|Q91ZS8|RED1_MOUSE Double-stranded RNA-specific editase 1 OS=Mus musculus GN=Adarb1
PE=1 SV=1
Length = 711
Score = 33.9 bits (76), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 5/39 (12%)
Query: 781 VEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRSMFGQFP 819
VE++GQV +G G T +AK+ AAEKAL S F QFP
Sbjct: 113 VEVNGQVF-EGSGPTKKKAKLHAAEKALRS----FVQFP 146
>sp|Q8SV03|FCP1_ENCCU RNA polymerase II subunit A C-terminal domain phosphatase
OS=Encephalitozoon cuniculi (strain GB-M1) GN=FCP1 PE=1
SV=1
Length = 411
Score = 33.9 bits (76), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 11/95 (11%)
Query: 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVC 224
V+LRP + Y+ R K +E++V TM R YA + ++DP + DRI+
Sbjct: 96 VKLRPNLD----YMLRRISKLYEIHVYTMGTRAYAERIVEIIDPSGKYFD-----DRII- 145
Query: 225 VKSGSRKSLFNVFQDGTCHPKMALVI-DDRLKVWD 258
+ ++ L H +VI DDR VWD
Sbjct: 146 TRDENQGVLVKRLSRLFPHDHRNIVILDDRPDVWD 180
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 325,539,179
Number of Sequences: 539616
Number of extensions: 14359461
Number of successful extensions: 42348
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 125
Number of HSP's that attempted gapping in prelim test: 42142
Number of HSP's gapped (non-prelim): 331
length of query: 862
length of database: 191,569,459
effective HSP length: 126
effective length of query: 736
effective length of database: 123,577,843
effective search space: 90953292448
effective search space used: 90953292448
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)