Query 002970
Match_columns 862
No_of_seqs 394 out of 900
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 14:26:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002970.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002970hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0323 TFIIF-interacting CTD 100.0 8.9E-54 1.9E-58 488.8 14.4 476 2-680 68-548 (635)
2 TIGR02250 FCP1_euk FCP1-like p 99.9 3.7E-27 8E-32 231.2 11.2 102 160-274 52-156 (156)
3 KOG3732 Staufen and related do 99.9 1.8E-23 4E-28 224.2 17.9 174 610-815 38-213 (339)
4 TIGR02251 HIF-SF_euk Dullard-l 99.8 9.8E-19 2.1E-23 172.0 12.0 117 161-300 37-159 (162)
5 PF03031 NIF: NLI interacting 99.8 1.1E-18 2.3E-23 168.3 9.9 118 160-299 30-153 (159)
6 PHA02701 ORF020 dsRNA-binding 99.6 6.5E-15 1.4E-19 148.3 10.3 70 608-677 106-177 (183)
7 smart00577 CPDc catalytic doma 99.6 1.6E-14 3.4E-19 139.6 11.5 102 160-276 39-146 (148)
8 PHA03103 double-strand RNA-bin 99.5 4.8E-14 1E-18 142.5 10.4 68 609-677 108-177 (183)
9 COG5190 FCP1 TFIIF-interacting 99.5 2.8E-14 6E-19 158.1 4.9 88 158-257 68-158 (390)
10 smart00358 DSRM Double-strande 99.5 2.7E-13 5.9E-18 112.3 9.4 64 612-675 1-66 (67)
11 cd00048 DSRM Double-stranded R 99.5 3.8E-13 8.1E-18 111.0 9.5 65 611-675 1-68 (68)
12 PF00035 dsrm: Double-stranded 99.4 6.8E-13 1.5E-17 110.6 10.6 64 612-675 1-67 (67)
13 PF00035 dsrm: Double-stranded 99.4 3.1E-13 6.7E-18 112.6 7.7 66 744-811 1-67 (67)
14 PHA02701 ORF020 dsRNA-binding 99.4 1.2E-12 2.5E-17 132.2 12.9 73 740-814 106-178 (183)
15 PHA03103 double-strand RNA-bin 99.4 2.9E-13 6.2E-18 136.9 8.5 72 741-815 108-179 (183)
16 cd00048 DSRM Double-stranded R 99.4 6.2E-13 1.4E-17 109.7 8.2 67 743-811 1-68 (68)
17 KOG2777 tRNA-specific adenosin 99.4 4.4E-13 9.5E-18 152.8 9.5 164 627-848 10-181 (542)
18 PRK12371 ribonuclease III; Rev 99.4 6.7E-13 1.4E-17 138.8 10.1 68 610-677 161-231 (235)
19 smart00358 DSRM Double-strande 99.4 7.2E-13 1.6E-17 109.7 8.1 67 744-812 1-67 (67)
20 KOG1605 TFIIF-interacting CTD 99.4 2E-13 4.3E-18 144.9 3.2 119 161-298 126-246 (262)
21 COG0571 Rnc dsRNA-specific rib 99.3 3.2E-12 6.9E-17 134.1 9.5 69 610-678 161-232 (235)
22 PRK14718 ribonuclease III; Pro 99.3 9E-12 2E-16 139.6 10.0 67 610-676 151-221 (467)
23 PRK12372 ribonuclease III; Rev 99.2 1.8E-11 4E-16 136.2 10.0 68 610-677 151-222 (413)
24 TIGR02245 HAD_IIID1 HAD-superf 99.2 1E-10 2.2E-15 119.8 10.6 128 163-299 42-179 (195)
25 PRK12371 ribonuclease III; Rev 99.2 5.6E-11 1.2E-15 124.5 8.1 72 741-813 160-231 (235)
26 PRK00102 rnc ribonuclease III; 99.2 1.2E-10 2.6E-15 119.5 10.0 70 608-677 156-228 (229)
27 COG0571 Rnc dsRNA-specific rib 99.1 8.1E-11 1.8E-15 123.6 8.6 71 742-813 161-231 (235)
28 TIGR02191 RNaseIII ribonucleas 99.1 2.5E-10 5.5E-15 116.2 9.3 68 608-675 150-220 (220)
29 PRK00102 rnc ribonuclease III; 99.1 3.5E-10 7.6E-15 116.1 8.5 73 740-813 156-228 (229)
30 PRK14718 ribonuclease III; Pro 99.1 3.1E-10 6.8E-15 127.5 8.7 86 741-827 150-238 (467)
31 PRK12372 ribonuclease III; Rev 99.1 4.1E-10 8.9E-15 125.7 9.4 86 741-827 150-238 (413)
32 TIGR02191 RNaseIII ribonucleas 99.0 9.5E-10 2.1E-14 112.0 8.4 70 740-811 150-220 (220)
33 KOG3732 Staufen and related do 98.9 2.9E-09 6.3E-14 115.8 7.3 71 742-815 38-108 (339)
34 PF14709 DND1_DSRM: double str 98.8 4.8E-09 1E-13 93.6 6.4 69 742-811 1-79 (80)
35 KOG4334 Uncharacterized conser 98.7 6.6E-08 1.4E-12 108.9 10.4 185 605-812 370-557 (650)
36 PF14709 DND1_DSRM: double str 98.4 8.4E-07 1.8E-11 79.3 6.9 65 611-675 2-79 (80)
37 KOG1817 Ribonuclease [RNA proc 98.0 1.6E-05 3.4E-10 89.5 8.5 69 611-679 428-505 (533)
38 KOG3792 Transcription factor N 98.0 7.4E-06 1.6E-10 96.1 5.4 187 626-833 385-592 (816)
39 TIGR01489 DKMTPPase-SF 2,3-dik 97.9 7.5E-05 1.6E-09 72.7 11.3 39 165-206 71-109 (188)
40 KOG2832 TFIIF-interacting CTD 97.8 5.9E-05 1.3E-09 83.7 8.4 119 159-300 207-330 (393)
41 TIGR02253 CTE7 HAD superfamily 97.8 0.00013 2.7E-09 73.6 9.8 81 164-254 92-177 (221)
42 TIGR01685 MDP-1 magnesium-depe 97.7 0.0001 2.2E-09 74.7 7.9 100 165-267 44-153 (174)
43 KOG2777 tRNA-specific adenosin 97.7 8.7E-05 1.9E-09 86.2 7.4 66 609-679 89-156 (542)
44 PF13419 HAD_2: Haloacid dehal 97.6 5.9E-05 1.3E-09 71.0 4.9 81 164-254 75-160 (176)
45 PLN02770 haloacid dehalogenase 97.6 9.9E-05 2.2E-09 77.2 6.1 80 165-254 107-191 (248)
46 TIGR03351 PhnX-like phosphonat 97.6 0.00016 3.4E-09 73.2 7.3 81 165-254 86-173 (220)
47 TIGR01454 AHBA_synth_RP 3-amin 97.6 0.00038 8.2E-09 69.9 9.7 80 165-254 74-158 (205)
48 TIGR01449 PGP_bact 2-phosphogl 97.6 0.00058 1.3E-08 68.3 10.9 82 164-255 83-169 (213)
49 TIGR01509 HAD-SF-IA-v3 haloaci 97.5 0.0005 1.1E-08 66.5 9.5 79 165-254 84-167 (183)
50 TIGR01548 HAD-SF-IA-hyp1 haloa 97.5 0.00066 1.4E-08 68.0 10.6 79 166-254 106-188 (197)
51 COG5190 FCP1 TFIIF-interacting 97.5 0.00014 3.1E-09 81.9 6.5 100 161-271 247-347 (390)
52 PLN03243 haloacid dehalogenase 97.5 0.00023 5E-09 75.8 7.3 80 165-254 108-192 (260)
53 TIGR01993 Pyr-5-nucltdase pyri 97.5 0.00064 1.4E-08 67.1 9.8 77 165-254 83-168 (184)
54 PRK13288 pyrophosphatase PpaX; 97.5 0.00061 1.3E-08 68.9 9.9 80 165-254 81-165 (214)
55 TIGR01549 HAD-SF-IA-v1 haloaci 97.5 0.0005 1.1E-08 65.6 8.7 75 167-253 65-143 (154)
56 TIGR01491 HAD-SF-IB-PSPlk HAD- 97.4 0.00087 1.9E-08 66.2 9.9 46 165-214 79-124 (201)
57 PRK13225 phosphoglycolate phos 97.4 0.00076 1.6E-08 72.4 10.1 80 165-254 141-222 (273)
58 PRK14988 GMP/IMP nucleotidase; 97.4 0.00074 1.6E-08 69.9 9.4 80 165-254 92-176 (224)
59 PLN02575 haloacid dehalogenase 97.4 0.00076 1.6E-08 76.2 10.1 81 165-255 215-300 (381)
60 PRK13223 phosphoglycolate phos 97.4 0.00043 9.3E-09 73.8 7.7 80 165-254 100-184 (272)
61 TIGR02254 YjjG/YfnB HAD superf 97.4 0.00069 1.5E-08 68.0 8.8 79 165-254 96-180 (224)
62 TIGR00338 serB phosphoserine p 97.3 0.00087 1.9E-08 67.7 8.9 46 165-214 84-129 (219)
63 PLN02954 phosphoserine phospha 97.3 0.0013 2.7E-08 66.8 10.1 47 165-214 83-130 (224)
64 TIGR01428 HAD_type_II 2-haloal 97.3 0.00017 3.6E-09 71.9 3.4 80 165-254 91-175 (198)
65 PRK10826 2-deoxyglucose-6-phos 97.3 0.0011 2.5E-08 67.4 9.3 85 165-259 91-180 (222)
66 PRK13222 phosphoglycolate phos 97.3 0.0019 4.1E-08 65.1 10.4 80 165-254 92-176 (226)
67 PRK11587 putative phosphatase; 97.2 0.00092 2E-08 68.2 8.1 79 165-254 82-165 (218)
68 cd01427 HAD_like Haloacid deha 97.2 0.00053 1.2E-08 61.4 5.7 40 165-207 23-62 (139)
69 TIGR02252 DREG-2 REG-2-like, H 97.2 0.0013 2.9E-08 65.6 8.8 79 165-254 104-187 (203)
70 PLN02940 riboflavin kinase 97.2 0.00028 6E-09 79.1 4.2 80 165-254 92-177 (382)
71 TIGR01422 phosphonatase phosph 97.2 0.0028 6E-08 66.0 10.8 87 165-260 98-191 (253)
72 KOG3769 Ribonuclease III domai 97.2 0.00028 6E-09 76.8 3.4 70 608-677 230-303 (333)
73 TIGR01488 HAD-SF-IB Haloacid D 97.1 0.0031 6.7E-08 61.2 10.3 46 165-214 72-117 (177)
74 PRK13226 phosphoglycolate phos 97.1 0.0022 4.8E-08 66.2 9.6 81 164-254 93-178 (229)
75 KOG1817 Ribonuclease [RNA proc 97.1 0.00071 1.5E-08 76.6 6.3 83 742-827 427-515 (533)
76 COG0546 Gph Predicted phosphat 97.1 0.0051 1.1E-07 63.4 12.0 86 165-260 88-179 (220)
77 PRK09449 dUMP phosphatase; Pro 97.1 0.0024 5.1E-08 64.9 9.2 84 165-259 94-185 (224)
78 PRK10725 fructose-1-P/6-phosph 97.0 0.0022 4.7E-08 63.1 7.7 77 166-254 88-169 (188)
79 TIGR01990 bPGM beta-phosphoglu 97.0 0.0029 6.3E-08 61.8 8.5 78 165-254 86-168 (185)
80 KOG4334 Uncharacterized conser 96.9 0.00082 1.8E-08 76.9 4.1 69 740-811 373-441 (650)
81 PRK09552 mtnX 2-hydroxy-3-keto 96.8 0.005 1.1E-07 63.1 9.1 39 165-206 73-111 (219)
82 PRK10563 6-phosphogluconate ph 96.8 0.00084 1.8E-08 68.1 3.3 90 165-267 87-182 (221)
83 KOG3769 Ribonuclease III domai 96.8 0.0012 2.7E-08 71.9 4.6 75 740-815 230-305 (333)
84 COG1011 Predicted hydrolase (H 96.8 0.0018 4E-08 65.2 5.2 79 165-254 98-181 (229)
85 PRK13582 thrH phosphoserine ph 96.7 0.0094 2E-07 59.6 10.0 45 165-214 67-111 (205)
86 TIGR01533 lipo_e_P4 5'-nucleot 96.7 0.0071 1.5E-07 65.4 9.6 77 168-254 120-198 (266)
87 COG4996 Predicted phosphatase 96.5 0.0046 1E-07 61.1 5.6 93 165-269 40-143 (164)
88 PHA03398 viral phosphatase sup 96.5 0.0068 1.5E-07 66.7 7.5 107 165-306 146-255 (303)
89 TIGR02247 HAD-1A3-hyp Epoxide 96.4 0.0049 1.1E-07 62.1 5.3 83 164-254 92-179 (211)
90 PHA02597 30.2 hypothetical pro 96.4 0.011 2.3E-07 59.2 7.6 82 165-255 73-156 (197)
91 TIGR01493 HAD-SF-IA-v2 Haloaci 96.3 0.0012 2.7E-08 64.3 0.6 73 165-254 89-166 (175)
92 PRK08238 hypothetical protein; 96.3 0.02 4.4E-07 66.6 10.4 79 165-261 71-159 (479)
93 TIGR01684 viral_ppase viral ph 96.3 0.0069 1.5E-07 66.6 6.1 52 165-226 144-196 (301)
94 TIGR03333 salvage_mtnX 2-hydro 96.1 0.02 4.3E-07 58.6 8.5 47 165-214 69-115 (214)
95 PRK09456 ?-D-glucose-1-phospha 96.1 0.015 3.3E-07 58.5 7.2 82 164-254 82-168 (199)
96 TIGR02137 HSK-PSP phosphoserin 95.9 0.024 5.3E-07 58.5 7.8 45 165-214 67-111 (203)
97 COG0637 Predicted phosphatase/ 95.8 0.02 4.3E-07 59.5 6.8 76 165-254 85-169 (221)
98 PF06888 Put_Phosphatase: Puta 95.5 0.076 1.7E-06 56.7 9.7 52 165-224 70-121 (234)
99 PRK10748 flavin mononucleotide 95.4 0.031 6.6E-07 58.3 6.5 80 165-260 112-198 (238)
100 COG0560 SerB Phosphoserine pho 95.4 0.062 1.4E-06 56.1 8.8 86 165-253 76-169 (212)
101 PRK11133 serB phosphoserine ph 95.3 0.061 1.3E-06 59.6 8.8 41 165-208 180-220 (322)
102 KOG0921 Dosage compensation co 95.3 0.034 7.4E-07 68.1 6.9 198 612-812 3-239 (1282)
103 TIGR01686 FkbH FkbH-like domai 95.2 0.031 6.8E-07 61.1 6.0 81 168-254 33-113 (320)
104 PLN02919 haloacid dehalogenase 95.2 0.09 1.9E-06 66.6 10.6 79 167-254 162-245 (1057)
105 TIGR01672 AphA HAD superfamily 95.1 0.074 1.6E-06 56.7 8.1 72 169-254 117-194 (237)
106 TIGR01490 HAD-SF-IB-hyp1 HAD-s 95.1 0.0089 1.9E-07 59.6 1.2 46 165-214 86-131 (202)
107 KOG0323 TFIIF-interacting CTD 94.9 0.036 7.9E-07 66.3 5.8 60 282-356 394-453 (635)
108 KOG3109 Haloacid dehalogenase- 94.8 0.036 7.8E-07 58.9 4.8 78 167-254 99-188 (244)
109 TIGR01681 HAD-SF-IIIC HAD-supe 94.4 0.035 7.6E-07 53.1 3.3 86 166-254 29-118 (128)
110 PRK11009 aphA acid phosphatase 94.2 0.14 3.1E-06 54.7 7.8 38 165-205 113-154 (237)
111 PRK11590 hypothetical protein; 94.1 0.079 1.7E-06 54.4 5.4 40 165-207 94-134 (211)
112 PF00702 Hydrolase: haloacid d 92.6 1 2.2E-05 44.7 10.4 80 163-254 124-205 (215)
113 PF03368 Dicer_dimer: Dicer di 91.2 0.25 5.4E-06 45.3 3.9 63 745-815 2-75 (90)
114 PF12689 Acid_PPase: Acid Phos 90.8 0.9 1.9E-05 46.5 7.9 88 163-254 42-134 (169)
115 PRK06698 bifunctional 5'-methy 90.5 0.52 1.1E-05 54.2 6.6 78 165-254 329-410 (459)
116 TIGR02009 PGMB-YQAB-SF beta-ph 90.3 0.34 7.4E-06 47.4 4.3 78 165-254 87-169 (185)
117 PRK13478 phosphonoacetaldehyde 89.5 0.66 1.4E-05 49.1 5.9 81 165-254 100-186 (267)
118 PF05152 DUF705: Protein of un 89.3 0.82 1.8E-05 50.5 6.6 102 169-306 145-249 (297)
119 TIGR01691 enolase-ppase 2,3-di 89.2 0.59 1.3E-05 49.3 5.3 84 165-254 94-179 (220)
120 TIGR01675 plant-AP plant acid 88.7 2.6 5.6E-05 45.2 9.7 95 169-274 123-227 (229)
121 PF12710 HAD: haloacid dehalog 87.9 1.2 2.6E-05 43.6 6.2 38 169-209 92-129 (192)
122 TIGR01261 hisB_Nterm histidino 87.0 1.2 2.6E-05 44.6 5.7 79 165-254 28-130 (161)
123 PLN02779 haloacid dehalogenase 86.8 0.91 2E-05 49.2 5.0 95 165-267 143-242 (286)
124 PF03368 Dicer_dimer: Dicer di 86.4 3.4 7.5E-05 37.9 7.8 62 613-678 2-74 (90)
125 PF14954 LIX1: Limb expression 86.1 1.1 2.4E-05 47.7 5.1 74 742-815 21-100 (252)
126 TIGR00099 Cof-subfamily Cof su 85.2 1.7 3.6E-05 45.5 5.9 29 50-79 2-30 (256)
127 KOG3120 Predicted haloacid deh 82.5 1.3 2.7E-05 47.8 3.6 35 169-205 87-121 (256)
128 PLN02811 hydrolase 81.1 2.3 5E-05 43.7 4.9 79 165-254 77-167 (220)
129 TIGR01656 Histidinol-ppas hist 80.7 3 6.5E-05 40.5 5.3 40 165-207 26-80 (147)
130 PHA02530 pseT polynucleotide k 80.1 1.9 4.1E-05 46.2 4.0 80 165-256 186-281 (300)
131 PF08282 Hydrolase_3: haloacid 79.8 1.4 3E-05 44.1 2.8 29 50-79 1-29 (254)
132 TIGR01482 SPP-subfamily Sucros 77.0 2 4.3E-05 43.6 2.9 28 50-79 1-29 (225)
133 PF03767 Acid_phosphat_B: HAD 76.4 2 4.4E-05 45.5 2.9 80 169-259 118-207 (229)
134 TIGR01485 SPP_plant-cyano sucr 76.4 1.1 2.5E-05 46.9 1.0 14 47-60 1-14 (249)
135 KOG1615 Phosphoserine phosphat 74.1 26 0.00056 37.6 10.1 42 165-209 87-128 (227)
136 TIGR01664 DNA-3'-Pase DNA 3'-p 73.5 7.3 0.00016 39.2 5.9 79 167-254 43-137 (166)
137 COG0561 Cof Predicted hydrolas 72.5 3.7 8.1E-05 43.1 3.7 28 47-75 3-30 (264)
138 PTZ00174 phosphomannomutase; P 70.1 5.8 0.00013 41.9 4.5 31 47-79 5-36 (247)
139 TIGR01668 YqeG_hyp_ppase HAD s 69.5 6.4 0.00014 39.4 4.4 82 166-261 43-127 (170)
140 PRK12702 mannosyl-3-phosphogly 69.1 4.4 9.5E-05 45.3 3.4 66 49-121 3-70 (302)
141 TIGR02461 osmo_MPG_phos mannos 68.4 3.7 8.1E-05 43.0 2.6 29 49-79 1-29 (225)
142 PRK03669 mannosyl-3-phosphogly 67.8 3.8 8.1E-05 43.7 2.5 32 47-79 7-38 (271)
143 PRK01158 phosphoglycolate phos 67.7 4.3 9.3E-05 41.4 2.8 28 49-78 5-33 (230)
144 TIGR01459 HAD-SF-IIA-hyp4 HAD- 66.5 8 0.00017 40.6 4.6 80 165-253 23-104 (242)
145 TIGR01544 HAD-SF-IE haloacid d 66.2 8.6 0.00019 42.5 4.9 38 165-205 120-157 (277)
146 PF11019 DUF2608: Protein of u 65.4 42 0.00092 36.3 9.9 25 231-255 165-189 (252)
147 TIGR02244 HAD-IG-Ncltidse HAD 64.6 8.7 0.00019 43.6 4.7 60 163-225 181-241 (343)
148 TIGR00213 GmhB_yaeD D,D-heptos 64.4 19 0.00042 35.9 6.7 29 165-196 25-53 (176)
149 KOG3792 Transcription factor N 64.2 5.1 0.00011 48.9 2.9 62 609-675 505-569 (816)
150 PRK10513 sugar phosphate phosp 63.9 5.6 0.00012 41.8 2.9 29 49-79 5-34 (270)
151 TIGR01681 HAD-SF-IIIC HAD-supe 63.8 5.8 0.00013 38.0 2.7 14 49-62 2-15 (128)
152 TIGR01689 EcbF-BcbF capsule bi 63.8 5.9 0.00013 38.9 2.8 13 49-61 3-15 (126)
153 TIGR01484 HAD-SF-IIB HAD-super 63.7 7.9 0.00017 38.9 3.8 13 50-62 2-14 (204)
154 PRK08942 D,D-heptose 1,7-bisph 63.3 20 0.00044 35.8 6.6 29 165-196 28-56 (181)
155 TIGR01680 Veg_Stor_Prot vegeta 62.1 5.8 0.00013 43.8 2.7 15 45-59 99-113 (275)
156 PRK05446 imidazole glycerol-ph 61.7 13 0.00029 42.3 5.5 79 165-254 29-131 (354)
157 PF14954 LIX1: Limb expression 61.0 16 0.00035 39.3 5.6 63 610-674 21-94 (252)
158 PRK10976 putative hydrolase; P 60.4 6.7 0.00014 41.2 2.7 30 49-79 4-33 (266)
159 PRK10530 pyridoxal phosphate ( 59.9 6.7 0.00014 41.0 2.6 30 49-79 5-34 (272)
160 TIGR01663 PNK-3'Pase polynucle 59.5 15 0.00032 44.0 5.6 37 168-207 199-247 (526)
161 PRK15126 thiamin pyrimidine py 59.4 6.9 0.00015 41.4 2.6 30 49-79 4-33 (272)
162 PRK06769 hypothetical protein; 59.2 18 0.00039 36.4 5.4 29 165-196 27-55 (173)
163 TIGR02463 MPGP_rel mannosyl-3- 59.1 7.1 0.00015 39.9 2.6 28 50-78 2-29 (221)
164 TIGR01662 HAD-SF-IIIA HAD-supe 58.7 15 0.00033 34.5 4.5 84 165-260 24-121 (132)
165 KOG2334 tRNA-dihydrouridine sy 57.3 3.3 7.2E-05 48.1 -0.2 66 610-677 375-442 (477)
166 TIGR02009 PGMB-YQAB-SF beta-ph 56.3 5 0.00011 39.3 0.9 14 49-62 3-16 (185)
167 TIGR01487 SPP-like sucrose-pho 55.7 9.5 0.00021 38.9 2.8 28 49-78 3-31 (215)
168 PRK13478 phosphonoacetaldehyde 51.3 6.4 0.00014 41.7 0.8 14 49-62 6-19 (267)
169 PF02169 LPP20: LPP20 lipoprot 49.8 20 0.00044 31.9 3.7 28 785-812 12-39 (92)
170 TIGR01662 HAD-SF-IIIA HAD-supe 49.7 14 0.0003 34.7 2.7 12 49-60 2-13 (132)
171 TIGR01456 CECR5 HAD-superfamil 48.8 12 0.00026 41.4 2.4 28 48-77 1-28 (321)
172 PLN02151 trehalose-phosphatase 48.0 18 0.00039 41.4 3.7 25 35-59 86-110 (354)
173 PLN03017 trehalose-phosphatase 47.6 12 0.00026 42.9 2.3 33 27-59 89-123 (366)
174 TIGR01486 HAD-SF-IIB-MPGP mann 47.3 13 0.00028 39.2 2.3 28 50-78 2-29 (256)
175 PLN02887 hydrolase family prot 47.1 14 0.00031 44.6 2.9 31 48-79 309-339 (580)
176 PF02169 LPP20: LPP20 lipoprot 46.0 28 0.0006 31.0 3.9 29 649-677 12-40 (92)
177 PLN02423 phosphomannomutase 45.3 17 0.00037 38.7 2.8 29 47-77 7-36 (245)
178 PRK00192 mannosyl-3-phosphogly 44.7 16 0.00035 39.0 2.6 29 48-77 5-33 (273)
179 PLN02779 haloacid dehalogenase 43.7 9.6 0.00021 41.4 0.7 14 49-62 42-55 (286)
180 COG2503 Predicted secreted aci 42.9 9.3 0.0002 41.9 0.4 17 45-61 77-93 (274)
181 COG2179 Predicted hydrolase of 42.0 14 0.0003 38.5 1.5 22 41-62 22-43 (175)
182 TIGR02471 sucr_syn_bact_C sucr 41.8 16 0.00036 37.8 2.1 23 50-74 2-24 (236)
183 TIGR01545 YfhB_g-proteo haloac 39.9 12 0.00026 39.0 0.8 38 165-205 93-131 (210)
184 PF05116 S6PP: Sucrose-6F-phos 39.9 18 0.00039 38.6 2.0 13 47-59 2-14 (247)
185 PRK10187 trehalose-6-phosphate 39.8 23 0.00049 38.3 2.8 15 47-61 14-28 (266)
186 TIGR01656 Histidinol-ppas hist 37.5 26 0.00057 34.0 2.6 15 49-63 2-16 (147)
187 smart00775 LNS2 LNS2 domain. T 37.3 25 0.00055 35.2 2.5 21 49-69 1-21 (157)
188 TIGR01457 HAD-SF-IIA-hyp2 HAD- 35.6 22 0.00047 37.9 1.8 29 49-79 3-31 (249)
189 TIGR00685 T6PP trehalose-phosp 34.7 20 0.00043 37.9 1.3 15 46-60 2-16 (244)
190 PRK06698 bifunctional 5'-methy 33.6 16 0.00034 42.3 0.4 14 49-62 243-256 (459)
191 PLN02382 probable sucrose-phos 32.2 30 0.00065 40.0 2.4 17 45-61 7-23 (413)
192 TIGR01458 HAD-SF-IIA-hyp3 HAD- 32.0 24 0.00052 37.8 1.4 34 169-205 123-156 (257)
193 PF02839 CBM_5_12: Carbohydrat 31.8 24 0.00053 27.5 1.1 21 106-126 9-29 (41)
194 cd01773 Faf1_like1_UBX Faf1 ik 31.1 1.9E+02 0.0041 26.8 6.8 76 136-253 4-81 (82)
195 PRK10444 UMP phosphatase; Prov 29.9 30 0.00064 37.2 1.7 27 49-77 3-29 (248)
196 PRK14502 bifunctional mannosyl 28.6 43 0.00093 41.5 2.9 33 46-79 415-447 (694)
197 KOG0921 Dosage compensation co 28.2 70 0.0015 41.0 4.6 65 743-811 2-68 (1282)
198 PF08645 PNK3P: Polynucleotide 28.2 28 0.0006 35.0 1.1 16 50-65 3-18 (159)
199 PF09003 Phage_integ_N: Bacter 27.4 51 0.0011 30.2 2.5 32 777-810 29-60 (75)
200 PF00333 Ribosomal_S5: Ribosom 27.2 52 0.0011 29.2 2.4 39 637-675 20-62 (67)
201 KOG2334 tRNA-dihydrouridine sy 27.1 33 0.00072 40.3 1.6 67 740-811 373-440 (477)
202 TIGR01452 PGP_euk phosphoglyco 26.8 33 0.00072 36.9 1.4 28 49-78 4-31 (279)
203 TIGR01525 ATPase-IB_hvy heavy 26.3 96 0.0021 37.0 5.2 43 163-208 381-424 (556)
204 COG3882 FkbH Predicted enzyme 25.8 35 0.00075 40.8 1.4 26 37-62 212-237 (574)
205 PF09419 PGP_phosphatase: Mito 24.7 55 0.0012 33.8 2.5 21 44-64 38-58 (168)
206 PHA02629 A-type inclusion body 24.6 1.6E+02 0.0034 25.6 4.6 28 86-113 34-61 (61)
207 TIGR01670 YrbI-phosphatas 3-de 24.4 33 0.00071 33.9 0.8 73 166-254 30-102 (154)
208 TIGR01545 YfhB_g-proteo haloac 23.7 89 0.0019 32.6 3.9 19 49-67 7-25 (210)
209 COG4172 ABC-type uncharacteriz 23.2 2E+02 0.0044 34.4 6.7 37 88-124 197-241 (534)
210 PF14657 Integrase_AP2: AP2-li 23.0 2E+02 0.0044 23.2 5.0 21 650-670 17-37 (46)
211 TIGR01670 YrbI-phosphatas 3-de 23.0 2.3E+02 0.0051 27.9 6.4 12 196-207 75-86 (154)
212 cd00036 ChtBD3 Chitin/cellulos 22.9 48 0.001 25.8 1.3 19 106-124 7-25 (41)
213 PF09921 DUF2153: Uncharacteri 22.6 1.2E+02 0.0027 30.3 4.3 40 66-110 41-84 (126)
214 TIGR01664 DNA-3'-Pase DNA 3'-p 22.6 40 0.00086 34.0 1.0 13 50-62 16-28 (166)
215 PRK09484 3-deoxy-D-manno-octul 22.4 38 0.00083 34.4 0.9 11 49-59 23-33 (183)
216 PF10195 Phospho_p8: DNA-bindi 21.6 39 0.00085 29.7 0.6 14 653-666 23-36 (60)
217 KOG1924 RhoA GTPase effector D 20.9 2.8E+02 0.006 35.4 7.5 39 170-209 208-246 (1102)
218 TIGR01021 rpsE_bact ribosomal 20.9 1.1E+02 0.0024 31.3 3.7 41 637-677 20-64 (154)
219 TIGR01511 ATPase-IB1_Cu copper 20.4 1.3E+02 0.0028 36.2 4.8 42 164-208 403-444 (562)
220 PF04098 Rad52_Rad22: Rad52/22 20.3 1.9E+02 0.0041 29.1 5.2 65 612-676 38-128 (154)
221 PRK08942 D,D-heptose 1,7-bisph 20.0 52 0.0011 32.9 1.2 13 49-61 5-17 (181)
No 1
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=100.00 E-value=8.9e-54 Score=488.76 Aligned_cols=476 Identities=28% Similarity=0.372 Sum_probs=373.8
Q ss_pred CCCCCceeEEEEeeccCCCCCcceEEEEecccchHHHHHHHHhccceeEEEeCcchhhhhccccchHHHHHHHHhhhccC
Q 002970 2 PLGLTEELHLVAMYSRNNEKQYPCFWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLRKISTE 81 (862)
Q Consensus 2 ~~g~~~e~~lva~~~~~~~~~~p~f~~~~~~~~~~~~~~~ll~~r~L~lV~DLDeTLi~a~t~~~~e~ri~~l~~~~~~~ 81 (862)
.+| .++.|+|||.+..-.. .+|||+|.|..|+|+.|..+|+.+|...++||++|++.+++|.+|.++|.+...||.+.
T Consensus 68 ~~~-~~~~~~v~~~~~~~~~-~~~C~H~~v~~GlC~~Cg~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 145 (635)
T KOG0323|consen 68 LLG-RDLEKKVALISGVSSS-TSCCEHFTVFGGLCASCGKDLESLQGRSFDYLVKGLQLSNEMVAFTKTLTTQFSSLNRK 145 (635)
T ss_pred ccc-cchhhhhccccccccc-cCCccceeecccHHHHHHHHHHHhhccchhcccchhhhhhhhhhhhhHHHHHHHHHhhh
Confidence 356 7889999999998643 69999999999999999999999999999999999999999999999999999999766
Q ss_pred CChhhhhhhHHHHHHhhhhHHHHHHHhhcCccccCCeEEEeecccccCCCccccccccceeeccccceeeeecCCCCCCc
Q 002970 82 VDPQRIAGMQAEVKRYQDDKNILKQYAENDQVNENGKVIKVQSEVVPALSDSHQALVRPLIRLQEKNIILTRINPQIRDT 161 (862)
Q Consensus 82 ~dp~~~~~~~~e~kr~~~d~~lL~q~~~~d~v~~ng~~~~~q~E~~~~~~d~~~~~~rpvirl~~~n~~ltrI~P~~r~~ 161 (862)
. +++++++...|.+|+..+.+..+++-++.+.+.+ +.|..+++|+|..+.+
T Consensus 146 ~-----------L~lv~Dld~tllh~~~~~~l~e~~~~l~~~~~~~------------------~sn~dl~~~~~~~~~~ 196 (635)
T KOG0323|consen 146 K-----------LHLVLDLDHTLLHTILKSDLSETEKYLKEEAESV------------------ESNKDLFRFNPLGHDT 196 (635)
T ss_pred c-----------ceeehhhhhHHHHhhccchhhhhhhhcccccccc------------------cccccceeecccCCCc
Confidence 4 7888888999999999999999998888777664 3477899999999999
Q ss_pred eEEEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC---Cccchhhhcc
Q 002970 162 SVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG---SRKSLFNVFQ 238 (862)
Q Consensus 162 ~~~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~---~~KsL~~lfp 238 (862)
+|||||||||++ ||+ +++++|||||||||+|.||++||+||||+|.||+ +|||||+++ ..++|..+|+
T Consensus 197 ~~~vKlRP~~~e---fL~-~~sklfemhVyTmg~R~YA~~i~~liDP~~~lF~-----dRIisrde~~~~kt~dL~~~~p 267 (635)
T KOG0323|consen 197 EYLVKLRPFVHE---FLK-EANKLFEMHVYTMGTRDYALEIAKLIDPEGKYFG-----DRIISRDESPFFKTLDLVLLFP 267 (635)
T ss_pred eEEEEeCccHHH---HHH-HHHhhceeEEEeccchHHHHHHHHHhCCCCcccc-----ceEEEecCCCcccccccccCCC
Confidence 999999999999 999 9999999999999999999999999999999999 999999765 4466666776
Q ss_pred CCCCCCcEEEEEcCCcccCCCCCCCCeEEecccccccCchhhhccccchHHHHHHHHhhhcccchhcchhhhhhcccccc
Q 002970 239 DGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEFDEGLLQRIPEIS 318 (862)
Q Consensus 239 ~~~~~~~~vVIIDDR~dVW~~~~~~~v~vV~~Y~pf~~~q~e~~~~~p~L~~a~~vl~~Vh~~FF~~~de~l~~ri~ev~ 318 (862)
|+++||||||||.+||+++++ |+++|.+|.||....+-.+. +.+|.+++++|.++++||+++|+.+..+|.++-
T Consensus 268 ---~g~smvvIIDDr~dVW~~~~~-nLI~i~~y~yF~~~gd~nap--~~~~~~~~~~~~~~~~~~k~~~~s~~~~~~~~~ 341 (635)
T KOG0323|consen 268 ---CGDSMVVIIDDRSDVWPDHKR-NLIQIAPYPYFSGQGDINAP--PPLHVLRNVACSVRGAFFKEFDPSLKSRISEVR 341 (635)
T ss_pred ---CCCccEEEEeCccccccCCCc-ceEEeeeeecccCcccccCC--cccccccchhcccccccccccCccccccccccc
Confidence 999999999999999999965 67789999777654332222 789999999999999999999999999999999
Q ss_pred ccCcCCCCCCCCccccceeccccccccCCCCCccCCCCcchHHHHHHHHHhhhhhccccccccccCCCCCCCcccccCCC
Q 002970 319 YEDDVKDIPSPPDVSNYLVSEDDAATANGIKDPLSFDGMADAEVERRLKEAIAASATISSAVANLDPRLAPFQYTMPSSS 398 (862)
Q Consensus 319 ~e~~~~~~~~~pDv~~~l~~e~~~~~~~~~~~~~~~~g~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 398 (862)
|+++-.+.+..+++ -+++|..+...|||.+.
T Consensus 342 ~~~~~~~~~~~~~~-----------~~~~~~~p~~~~~~~~~-------------------------------------- 372 (635)
T KOG0323|consen 342 YEDDDESNPTSYSV-----------ELSANPGPLKQDGMDEF-------------------------------------- 372 (635)
T ss_pred ccccccccCccccc-----------ccccccCcccccccccc--------------------------------------
Confidence 99999999999988 36777775567776654
Q ss_pred CCCCcCCCccccccccccCCCCCccccccccccCCCCCCcCCCcccccCCCCCCCCChhhhhhhhhhhcCCCcCCCCCCC
Q 002970 399 STTTLPTSQAAVMPLANMQFPPATSLVKPLGHVGPPEQSLQSSPAREEGEVPESELDPDTRRRLLILQHGMDTRENAPSE 478 (862)
Q Consensus 399 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~psl~~sp~reege~~e~e~d~dtrrrllilqhgqd~r~~~~~~ 478 (862)
||+.
T Consensus 373 --------------------------------------------------~~~~-------------------------- 376 (635)
T KOG0323|consen 373 --------------------------------------------------VPEE-------------------------- 376 (635)
T ss_pred --------------------------------------------------cccc--------------------------
Confidence 0000
Q ss_pred CCCCCCCCccccCCccCCCCCccccccccCccccCCCCCCCCCCCccccc-cccCCCCCCCCCCCCCCCCCCCC-ccccc
Q 002970 479 APFPARTQMQVSVPRVPSRGSWFPVEEEMSPRQLNRAVPKEFPLNSEAMQ-IEKHRPPHPSFFPKIENPSTSDR-PHENQ 556 (862)
Q Consensus 479 pp~~~r~p~q~s~~~v~~~g~w~~ve~~~~~~~~nr~~~~~~~~~~~~~~-~~k~~~~~~s~~~~~~~~~~sd~-~~~~q 556 (862)
+.+++.+.+..+..+.+.+.++...+ ..+..+-|+.||.+.+ ...+. .+.+-
T Consensus 377 ------------------------~~~~~~~~s~~~~~~de~~~D~~L~~~~kvl~~vH~~ff~~~~--~~~e~~~~~Dv 430 (635)
T KOG0323|consen 377 ------------------------NAPEARSGSYREKKSDESDEDGELANLLKVLKPVHKGFFAKYD--EVEETLESPDV 430 (635)
T ss_pred ------------------------cchhhcccccccccccccccchhHHHHhhhhcccchhhhhccc--cccccccCCCh
Confidence 11122222222222333333444444 3445788999999865 22333 45555
Q ss_pred cCCchhcchhhhhhcccCCCCCCCCCCCCCCccCCCCCCCCccccCCccCCCCCCchHHHHHHHHhcCCCeEEEEeeecC
Q 002970 557 RMPKEALRRDDRLRLNHTLSDYQSFSGEEIPLSRSSSSSRDVDFESGRDVSSTETPSGVLQDIAMKCGTKVEFRPALVAS 636 (862)
Q Consensus 557 ~~p~~~~~~~~~~~~n~~~~~~~~f~~~~~~~~~~~s~~~~~~~~~~~~~~~~~n~KS~LQE~~QK~~~~l~Y~~v~~~~ 636 (862)
|.......+.....-|-..|+-+|+.....+ +......-+-+....+.+..-.++.++.+++....|+......
T Consensus 431 r~~i~~~~~~v~~~~~~vfSg~~P~~~~~~~------s~~~~~~~~~g~vs~~~~~~~~th~i~~~~gt~k~~~a~~~~~ 504 (635)
T KOG0323|consen 431 RLLIPELRTKVLKGSQIVFSGLHPTGSTDES------ADILGVAQQLGAVSAPDVSDKTTHLIAANAGTKKVYKAVVSGS 504 (635)
T ss_pred hhhhhhhhhHHhhccceeecccccCcCCcch------hhhhhhhhcccceecccccchhhhHHhhccCcceeeccccccc
Confidence 5554444445555556667777776654333 2222223333356677888899999999999888888654433
Q ss_pred CCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhh
Q 002970 637 TELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANVYM 680 (862)
Q Consensus 637 Hdk~Ftv~V~i~G~~~G~G~GkSKKeAEq~AA~~AL~~L~~~~~ 680 (862)
-.-.|...+|--.++||.|.++.++.+-..+|....+.+...+.
T Consensus 505 ~~Vv~~~wl~~~~e~w~~v~ek~~~l~~~~~~~~~~~~~a~~~~ 548 (635)
T KOG0323|consen 505 AKVVNAAWLWRSLEKWGKVEEKLEPLDDDQRAAIRRESLARLYE 548 (635)
T ss_pred eeEechhHHHHHHHHhcchhcccccccccccchhcccchhhhhh
Confidence 44567777888889999999999999999998888777765544
No 2
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=99.94 E-value=3.7e-27 Score=231.15 Aligned_cols=102 Identities=29% Similarity=0.548 Sum_probs=93.3
Q ss_pred CceEEEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC---Cccchhhh
Q 002970 160 DTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG---SRKSLFNV 236 (862)
Q Consensus 160 ~~~~~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~---~~KsL~~l 236 (862)
++.+++|+|||+++ ||+ +++++|||+|||+|.+.||..|++.|||++.+|+ +||++++++ ..|+|+++
T Consensus 52 ~~~~~v~~rPgv~e---fL~-~l~~~yel~I~T~~~~~yA~~vl~~ldp~~~~F~-----~ri~~rd~~~~~~~KdL~~i 122 (156)
T TIGR02250 52 TMWYLTKLRPFLHE---FLK-EASKLYEMHVYTMGTRAYAQAIAKLIDPDGKYFG-----DRIISRDESGSPHTKSLLRL 122 (156)
T ss_pred CeEEEEEECCCHHH---HHH-HHHhhcEEEEEeCCcHHHHHHHHHHhCcCCCeec-----cEEEEeccCCCCccccHHHH
Confidence 46799999999999 888 8889999999999999999999999999999998 899999763 67999999
Q ss_pred ccCCCCCCcEEEEEcCCcccCCCCCCCCeEEecccccc
Q 002970 237 FQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPY 274 (862)
Q Consensus 237 fp~~~~~~~~vVIIDDR~dVW~~~~~~~v~vV~~Y~pf 274 (862)
++ ++.+++|||||+++||..+. .|++.|++|.||
T Consensus 123 ~~---~d~~~vvivDd~~~~~~~~~-~N~i~i~~~~~f 156 (156)
T TIGR02250 123 FP---ADESMVVIIDDREDVWPWHK-RNLIQIEPYNYF 156 (156)
T ss_pred cC---CCcccEEEEeCCHHHhhcCc-cCEEEeCCcccC
Confidence 97 78999999999999999984 567789999987
No 3
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=99.91 E-value=1.8e-23 Score=224.24 Aligned_cols=174 Identities=20% Similarity=0.260 Sum_probs=136.0
Q ss_pred CCchHHHHHHHHhcCCCeEEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhhccccCCC
Q 002970 610 ETPSGVLQDIAMKCGTKVEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANVYMLRVKSDS 687 (862)
Q Consensus 610 ~n~KS~LQE~~QK~~~~l~Y~~v~~--~~Hdk~Ftv~V~i~G~~~G~G~GkSKKeAEq~AA~~AL~~L~~~~~a~~~~~~ 687 (862)
+++++.||||+.+.+.++.|+++.+ +.|++.|+++|.|+ +..++|.|+|||.|++.||+.+|..|...-+.
T Consensus 38 KS~IS~l~E~~~r~~~~v~fevl~eeGp~H~~~fv~rvtvg-~~~a~GeG~sKK~AKh~AA~~~L~~lk~l~~l------ 110 (339)
T KOG3732|consen 38 KSPISLLQEYGLRRGLTPVYEVLREEGPPHMPNFVFRVTVG-EITATGEGKSKKLAKHRAAEALLKELKKLPPL------ 110 (339)
T ss_pred CChHHHHHHHHHHhCCCcceeeeeccCCccCCCeEEEEEEe-eeEEecCCCchhHHHHHHHHHHHHHHhcCCCc------
Confidence 8899999999999999999999875 67999999999997 77799999999999999999999999764321
Q ss_pred CCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCcCCccccCCcCCCCchHHHHHHhhhcCCCceeeecCCC
Q 002970 688 GSGHGDGSRFSNANENCFMGEINSFGGQPLAKDESLSSEPSKLVDPRLEGSKKLMGSVSALKELCMTEGLGVVFQQQPPS 767 (862)
Q Consensus 688 ~~~~sD~~~~p~~~eN~f~~~~~s~~~~~~~~~d~~ss~~srl~~~~ld~~~~~~N~V~lLnELcqkeGL~~~f~~e~v~ 767 (862)
.....|+..+.-.+ .. +..... +. + ..-....|||+.|+||||..+|.+++|+. +.
T Consensus 111 ~~v~k~~~~~~~~~-----~~----~~~~~q--------~~---d---~~~~~~~NPI~~L~e~~q~k~~k~P~yel-v~ 166 (339)
T KOG3732|consen 111 ANVRKDSLKFAKMK-----SS----GVKKDQ--------PG---D---PEYGQVLNPIGRLQELAQAKKWKLPEYEL-VQ 166 (339)
T ss_pred cccccCcccccccc-----cC----CccccC--------CC---C---cccccccChHHHHHHHHHHhCCCCCceEE-Ee
Confidence 11122332221000 00 000000 00 0 00113459999999999999999998776 78
Q ss_pred CCCCCCCccEEEEEEECCEEEeeeecCCHHHHHHHHHHHHHHHhhccc
Q 002970 768 SANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRSMF 815 (862)
Q Consensus 768 ~sGp~H~keF~aqV~IdGkvyG~GtGsSKKeAKqqAAe~AL~aL~~~~ 815 (862)
+.|.+|.|+|+|+|+|++.+- +|.|.|||.||++||++.|..|-...
T Consensus 167 E~G~~~~rEFv~q~sv~~~~~-~GkG~sKKiAKRnAAeamLe~l~~~~ 213 (339)
T KOG3732|consen 167 ESGVPHRREFVIQCSVENFTE-EGKGPSKKIAKRNAAEAMLESLGFVK 213 (339)
T ss_pred ccCCCccceEEEEEEecceee-ecCCchHHHHHHHHHHHHHHHhccCC
Confidence 899999999999999999988 99999999999999999999997554
No 4
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=99.78 E-value=9.8e-19 Score=171.96 Aligned_cols=117 Identities=20% Similarity=0.180 Sum_probs=92.5
Q ss_pred ceEEEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC------Cccchh
Q 002970 161 TSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG------SRKSLF 234 (862)
Q Consensus 161 ~~~~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~------~~KsL~ 234 (862)
..|||++|||+.| ||+ +++++||++|||+|++.||..|++.|||.+.+|. ++++|+++ ..|+|.
T Consensus 37 ~~~~v~~RPgl~e---FL~-~l~~~yei~I~Ts~~~~yA~~il~~ldp~~~~f~------~~l~r~~~~~~~~~~~K~L~ 106 (162)
T TIGR02251 37 IPVYVFKRPHVDE---FLE-RVSKWYELVIFTASLEEYADPVLDILDRGGKVIS------RRLYRESCVFTNGKYVKDLS 106 (162)
T ss_pred EEEEEEECCCHHH---HHH-HHHhcCEEEEEcCCcHHHHHHHHHHHCcCCCEEe------EEEEccccEEeCCCEEeEch
Confidence 4699999999999 888 7788999999999999999999999999998888 44555443 458888
Q ss_pred hhccCCCCCCcEEEEEcCCcccCCCCCCCCeEEecccccccCchhhhccccchHHHHHHHHhhhcc
Q 002970 235 NVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRG 300 (862)
Q Consensus 235 ~lfp~~~~~~~~vVIIDDR~dVW~~~~~~~v~vV~~Y~pf~~~q~e~~~~~p~L~~a~~vl~~Vh~ 300 (862)
.+- .+.+.+|||||+...|....+ |.+.|.+|.. ...+-.|..++.+|..++.
T Consensus 107 ~l~----~~~~~vIiVDD~~~~~~~~~~-NgI~i~~f~~--------~~~D~~L~~l~~~L~~l~~ 159 (162)
T TIGR02251 107 LVG----KDLSKVIIIDNSPYSYSLQPD-NAIPIKSWFG--------DPNDTELLNLIPFLEGLRF 159 (162)
T ss_pred hcC----CChhhEEEEeCChhhhccCcc-CEeecCCCCC--------CCCHHHHHHHHHHHHHHhc
Confidence 765 467899999999999998854 4556777752 1222257778888877653
No 5
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=99.77 E-value=1.1e-18 Score=168.31 Aligned_cols=118 Identities=22% Similarity=0.267 Sum_probs=84.6
Q ss_pred CceEEEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC------Cccch
Q 002970 160 DTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG------SRKSL 233 (862)
Q Consensus 160 ~~~~~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~------~~KsL 233 (862)
.+.+++++|||+++ ||+ .+++.|||+|||+|++.||..|++.|||++.+|. ++++|+++ ..|+|
T Consensus 30 ~~~~~v~~RP~l~~---FL~-~l~~~~ev~i~T~~~~~ya~~v~~~ldp~~~~~~------~~~~r~~~~~~~~~~~KdL 99 (159)
T PF03031_consen 30 RGGYYVKLRPGLDE---FLE-ELSKHYEVVIWTSASEEYAEPVLDALDPNGKLFS------RRLYRDDCTFDKGSYIKDL 99 (159)
T ss_dssp EEEEEEEE-TTHHH---HHH-HHHHHCEEEEE-SS-HHHHHHHHHHHTTTTSSEE------EEEEGGGSEEETTEEE--G
T ss_pred ccceeEeeCchHHH---HHH-HHHHhceEEEEEeehhhhhhHHHHhhhhhccccc------cccccccccccccccccch
Confidence 35699999999999 998 8899999999999999999999999999999997 55566543 25899
Q ss_pred hhhccCCCCCCcEEEEEcCCcccCCCCCCCCeEEecccccccCchhhhccccchHHHHHHHHhhhc
Q 002970 234 FNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVR 299 (862)
Q Consensus 234 ~~lfp~~~~~~~~vVIIDDR~dVW~~~~~~~v~vV~~Y~pf~~~q~e~~~~~p~L~~a~~vl~~Vh 299 (862)
..+. .+.+.+|||||+..+|... +.|++.|++|.... ..+..|.....+|..+.
T Consensus 100 ~~l~----~~~~~vvivDD~~~~~~~~-~~N~i~v~~f~~~~-------~~D~~L~~l~~~L~~l~ 153 (159)
T PF03031_consen 100 SKLG----RDLDNVVIVDDSPRKWALQ-PDNGIPVPPFFGDT-------PNDRELLRLLPFLEELA 153 (159)
T ss_dssp GGSS----S-GGGEEEEES-GGGGTTS-GGGEEE----SSCH-------TT--HHHHHHHHHHHHH
T ss_pred HHHh----hccccEEEEeCCHHHeecc-CCceEEeccccCCC-------cchhHHHHHHHHHHHhC
Confidence 9994 3578999999999999887 56788899975554 12234666677776654
No 6
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=99.58 E-value=6.5e-15 Score=148.30 Aligned_cols=70 Identities=17% Similarity=0.268 Sum_probs=63.7
Q ss_pred CCCCchHHHHHHHHhcCCCeEEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 002970 608 STETPSGVLQDIAMKCGTKVEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLAN 677 (862)
Q Consensus 608 ~~~n~KS~LQE~~QK~~~~l~Y~~v~~--~~Hdk~Ftv~V~i~G~~~G~G~GkSKKeAEq~AA~~AL~~L~~ 677 (862)
...+|||.||||+|+.+..++|+++.+ ++|.++|+++|+|+|+.+|+|.|+|||+|||+||+.||+.|..
T Consensus 106 k~~DpKS~LQE~~Q~~~~~l~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA02701 106 KTLNPVSAVNEFCMRTHRPLEFCETRSGGHDHCPLFTCTIVVSGKVVATASGCSKKLARHAACADALTILIN 177 (183)
T ss_pred CCCCccHHHHHHHHhcCCCCeEEEEEeECCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHHHh
Confidence 445899999999999987669998765 5799999999999999999999999999999999999999855
No 7
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.56 E-value=1.6e-14 Score=139.56 Aligned_cols=102 Identities=24% Similarity=0.261 Sum_probs=81.0
Q ss_pred CceEEEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC------Cccch
Q 002970 160 DTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG------SRKSL 233 (862)
Q Consensus 160 ~~~~~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~------~~KsL 233 (862)
...+++++|||+.| ||+ .+.+.|++.|+|++.+.||+.+++.||+...+| ++|+++++. ..|.|
T Consensus 39 ~~~~~v~l~pG~~e---~L~-~L~~~~~l~I~Ts~~~~~~~~il~~l~~~~~~f------~~i~~~~d~~~~KP~~~k~l 108 (148)
T smart00577 39 PHGVYVKKRPGVDE---FLK-RASELFELVVFTAGLRMYADPVLDLLDPKKYFG------YRRLFRDECVFVKGKYVKDL 108 (148)
T ss_pred eEEEEEEECCCHHH---HHH-HHHhccEEEEEeCCcHHHHHHHHHHhCcCCCEe------eeEEECccccccCCeEeecH
Confidence 34699999999999 554 445679999999999999999999999976444 489998654 23456
Q ss_pred hhhccCCCCCCcEEEEEcCCcccCCCCCCCCeEEecccccccC
Q 002970 234 FNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYA 276 (862)
Q Consensus 234 ~~lfp~~~~~~~~vVIIDDR~dVW~~~~~~~v~vV~~Y~pf~~ 276 (862)
+++- ++++-+|+|||+...|.... .+.+.|++|+++..
T Consensus 109 ~~l~----~~p~~~i~i~Ds~~~~~aa~-~ngI~i~~f~~~~~ 146 (148)
T smart00577 109 SLLG----RDLSNVIIIDDSPDSWPFHP-ENLIPIKPWFGDPD 146 (148)
T ss_pred HHcC----CChhcEEEEECCHHHhhcCc-cCEEEecCcCCCCC
Confidence 5552 67899999999999999884 56678999977643
No 8
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=99.51 E-value=4.8e-14 Score=142.51 Aligned_cols=68 Identities=21% Similarity=0.281 Sum_probs=60.5
Q ss_pred CCCchHHHHHHHHhcCCCeEEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 002970 609 TETPSGVLQDIAMKCGTKVEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLAN 677 (862)
Q Consensus 609 ~~n~KS~LQE~~QK~~~~l~Y~~v~~--~~Hdk~Ftv~V~i~G~~~G~G~GkSKKeAEq~AA~~AL~~L~~ 677 (862)
..||||.||||||+++... |.++.+ ++|+++|+++|+|+|+.+|+|.|+|||+|||+||+.||..|..
T Consensus 108 ~kNpKS~LQE~~Qk~~~~~-y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA03103 108 DKNPCTVINEYCQITSRDW-SINITSSGPSHSPTFTASVIISGIKFKPAIGSTKKEAKNNAAKLAMDKILN 177 (183)
T ss_pred cCChhHHHHHHHHHhCCCe-EEEEEeeCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHh
Confidence 4589999999999998776 444433 6799999999999999999999999999999999999999955
No 9
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.47 E-value=2.8e-14 Score=158.13 Aligned_cols=88 Identities=34% Similarity=0.567 Sum_probs=82.5
Q ss_pred CCCceEEEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC---Cccchh
Q 002970 158 IRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG---SRKSLF 234 (862)
Q Consensus 158 ~r~~~~~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~---~~KsL~ 234 (862)
...|+|++|.||+... |+. ..+++||+|+||||++.||.++++++||.|++|+ +|+.+++.. ..|++.
T Consensus 68 ~~~~~~~~k~~~~l~~---~~~-~i~~~~e~~~~~~~~~~~~~~~~~i~d~~g~~~~-----d~~~~~~~~~~~~~~s~~ 138 (390)
T COG5190 68 QEKCAYYVKARPKLFP---FLT-KISPLYELHIYTMGTRAYAERIAKIIDPTGKLFN-----DRILSRDESGSLSQKSLS 138 (390)
T ss_pred cccccceeeecccccc---hhh-hhchhcceeeEeeccccchhhhhhcccccccccc-----cccccccccccchhhhhh
Confidence 4568899999999988 998 9999999999999999999999999999999999 999999643 679999
Q ss_pred hhccCCCCCCcEEEEEcCCcccC
Q 002970 235 NVFQDGTCHPKMALVIDDRLKVW 257 (862)
Q Consensus 235 ~lfp~~~~~~~~vVIIDDR~dVW 257 (862)
++|| ++.+|+||+||+.+||
T Consensus 139 ~l~p---~~~n~~vi~~d~~~~~ 158 (390)
T COG5190 139 RLFP---KDQNMVVIIDDRGDVW 158 (390)
T ss_pred hcCc---cccccccccccccccC
Confidence 9999 8999999999999999
No 10
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=99.46 E-value=2.7e-13 Score=112.25 Aligned_cols=64 Identities=31% Similarity=0.539 Sum_probs=59.3
Q ss_pred chHHHHHHHHhcCCCeEEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 002970 612 PSGVLQDIAMKCGTKVEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHL 675 (862)
Q Consensus 612 ~KS~LQE~~QK~~~~l~Y~~v~~--~~Hdk~Ftv~V~i~G~~~G~G~GkSKKeAEq~AA~~AL~~L 675 (862)
||+.|+||||+++..+.|+.... ++|.+.|++.|.|+|+.++.|.|+|||+||+.||+.||+.|
T Consensus 1 p~~~L~e~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 1 PKSLLQELAQKRGLPPEYELVKEEGPDHAPRFTVTVKVGGEYTGEGEGSSKKEAKQRAAEAALRSL 66 (67)
T ss_pred CchHHHHHHHHCCCCCEEEEEeeeCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHhc
Confidence 68999999999998899998753 56889999999999999999999999999999999999876
No 11
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=99.45 E-value=3.8e-13 Score=111.00 Aligned_cols=65 Identities=31% Similarity=0.536 Sum_probs=58.5
Q ss_pred CchHHHHHHHHhcC-CCeEEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 002970 611 TPSGVLQDIAMKCG-TKVEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHL 675 (862)
Q Consensus 611 n~KS~LQE~~QK~~-~~l~Y~~v~~--~~Hdk~Ftv~V~i~G~~~G~G~GkSKKeAEq~AA~~AL~~L 675 (862)
|||+.|+||||+++ ..+.|++... ++|.+.|++.|.|+|+.+++|.|+|||+||+.||+.||+.|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 68999999999984 6789998644 46789999999999999999999999999999999999865
No 12
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=99.44 E-value=6.8e-13 Score=110.56 Aligned_cols=64 Identities=25% Similarity=0.393 Sum_probs=57.1
Q ss_pred chHHHHHHHHhcCCCeEEEEeee--cCCC-ceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 002970 612 PSGVLQDIAMKCGTKVEFRPALV--ASTE-LQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHL 675 (862)
Q Consensus 612 ~KS~LQE~~QK~~~~l~Y~~v~~--~~Hd-k~Ftv~V~i~G~~~G~G~GkSKKeAEq~AA~~AL~~L 675 (862)
||+.||||||+.+..+.|..... ++|. +.|+++|+|+|..+|.|.|.|||+||+.||+.||+.|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGEGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeEeccCCHHHHHHHHHHHHHHhC
Confidence 68999999999998887776544 3444 8999999999999999999999999999999999886
No 13
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=99.43 E-value=3.1e-13 Score=112.59 Aligned_cols=66 Identities=33% Similarity=0.413 Sum_probs=58.9
Q ss_pred chHHHHHHhhhcCCCceeeecCCCCCCCCCC-ccEEEEEEECCEEEeeeecCCHHHHHHHHHHHHHHHh
Q 002970 744 SVSALKELCMTEGLGVVFQQQPPSSANSVQK-DEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSL 811 (862)
Q Consensus 744 ~V~lLnELcqkeGL~~~f~~e~v~~sGp~H~-keF~aqV~IdGkvyG~GtGsSKKeAKqqAAe~AL~aL 811 (862)
||+.|+|+|++.++.++|+.. ...++.|. +.|+++|+|+|+.|+.|.|+|||+||+.||+.||..|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~--~~~~~~~~~~~f~~~~~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYI--EEEGPSHHRPRFICTVYIDGKEYGEGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEE--EEESSSSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEE--EEeCCCCCCceEEEEEEECCEEEeEeccCCHHHHHHHHHHHHHHhC
Confidence 689999999999999998753 24566555 8999999999999999999999999999999999876
No 14
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=99.43 E-value=1.2e-12 Score=132.17 Aligned_cols=73 Identities=23% Similarity=0.286 Sum_probs=64.9
Q ss_pred CCCCchHHHHHHhhhcCCCceeeecCCCCCCCCCCccEEEEEEECCEEEeeeecCCHHHHHHHHHHHHHHHhhcc
Q 002970 740 KLMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRSM 814 (862)
Q Consensus 740 ~~~N~V~lLnELcqkeGL~~~f~~e~v~~sGp~H~keF~aqV~IdGkvyG~GtGsSKKeAKqqAAe~AL~aL~~~ 814 (862)
...||++.|||+||+.+....|.. +.++|++|.+.|++.|.|+|++||.|.|+|||+|+|+||+.||..|.+.
T Consensus 106 k~~DpKS~LQE~~Q~~~~~l~Y~l--i~~~GpdH~~~Ftv~V~V~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~~ 178 (183)
T PHA02701 106 KTLNPVSAVNEFCMRTHRPLEFCE--TRSGGHDHCPLFTCTIVVSGKVVATASGCSKKLARHAACADALTILINN 178 (183)
T ss_pred CCCCccHHHHHHHHhcCCCCeEEE--EEeECCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHHHhh
Confidence 345999999999999988776544 3567999999999999999999999999999999999999999999643
No 15
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=99.43 E-value=2.9e-13 Score=136.94 Aligned_cols=72 Identities=24% Similarity=0.227 Sum_probs=63.9
Q ss_pred CCCchHHHHHHhhhcCCCceeeecCCCCCCCCCCccEEEEEEECCEEEeeeecCCHHHHHHHHHHHHHHHhhccc
Q 002970 741 LMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRSMF 815 (862)
Q Consensus 741 ~~N~V~lLnELcqkeGL~~~f~~e~v~~sGp~H~keF~aqV~IdGkvyG~GtGsSKKeAKqqAAe~AL~aL~~~~ 815 (862)
..||++.|||+||++++.. |+. +.++|++|.+.|+++|.|+|+.||+|.|+|||+|||+||+.||..|.+..
T Consensus 108 ~kNpKS~LQE~~Qk~~~~~-y~~--i~~~Gp~H~p~F~v~V~I~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~~~ 179 (183)
T PHA03103 108 DKNPCTVINEYCQITSRDW-SIN--ITSSGPSHSPTFTASVIISGIKFKPAIGSTKKEAKNNAAKLAMDKILNYV 179 (183)
T ss_pred cCChhHHHHHHHHHhCCCe-EEE--EEeeCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhcc
Confidence 4588899999999998886 443 34689999999999999999999999999999999999999999996543
No 16
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=99.41 E-value=6.2e-13 Score=109.69 Aligned_cols=67 Identities=30% Similarity=0.369 Sum_probs=58.2
Q ss_pred CchHHHHHHhhhcCC-CceeeecCCCCCCCCCCccEEEEEEECCEEEeeeecCCHHHHHHHHHHHHHHHh
Q 002970 743 GSVSALKELCMTEGL-GVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSL 811 (862)
Q Consensus 743 N~V~lLnELcqkeGL-~~~f~~e~v~~sGp~H~keF~aqV~IdGkvyG~GtGsSKKeAKqqAAe~AL~aL 811 (862)
|||+.|+|+|++.++ .+.|... ...|+.|.+.|++.|.|+|+.++.|.|+|||+||+.||+.||..|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~--~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELV--EEEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEe--eeeCCCCCCeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 799999999999855 4445542 346888899999999999999999999999999999999999875
No 17
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=99.41 E-value=4.4e-13 Score=152.79 Aligned_cols=164 Identities=18% Similarity=0.192 Sum_probs=118.3
Q ss_pred eEEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhhcccc-----CCCCCCCCCCCCCCC
Q 002970 627 VEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANVYMLRVK-----SDSGSGHGDGSRFSN 699 (862)
Q Consensus 627 l~Y~~v~~--~~Hdk~Ftv~V~i~G~~~G~G~GkSKKeAEq~AA~~AL~~L~~~~~a~~~-----~~~~~~~sD~~~~p~ 699 (862)
..|..+.. +.|.+.|.+.|.|+|..+. ||.|++.||+.|++.+.+.--+.++ ....++++|+.+
T Consensus 10 ~~~~~~~q~~p~~~p~~~~~~~v~~~~~~------~k~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 80 (542)
T KOG2777|consen 10 LQYNLVSQTGPVHAPLFPFSVEVNGQEFP------KKKAKQRAAEKALRVFLQFPEAHLSMGGTEGVNEDLTSDQAD--- 80 (542)
T ss_pred cccccccccCCCCCCcccceEEecccccc------cccccchhhhHHHHHHhhcCCcccccCCCCccccccchhhhH---
Confidence 56766654 5699999999999999875 9999999999999999763221110 011111111111
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCCCcCCccccCCcCCCCchHHHHHHhhhcCCCceeeecCCCCCCCCCCccEEE
Q 002970 700 ANENCFMGEINSFGGQPLAKDESLSSEPSKLVDPRLEGSKKLMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYA 779 (862)
Q Consensus 700 ~~eN~f~~~~~s~~~~~~~~~d~~ss~~srl~~~~ld~~~~~~N~V~lLnELcqkeGL~~~f~~e~v~~sGp~H~keF~a 779 (862)
..+-......|||++|+||++ |+.+.|+.+ .|+.|.+.|.|
T Consensus 81 ---------------------------------~~~~~~~~~~npv~ll~e~~~--~~~~~~~~~----~~~~~~~~F~~ 121 (542)
T KOG2777|consen 81 ---------------------------------AFLSLGKEGKNPVSLLHELAN--GLFFDFVNE----SGPQHAPKFVM 121 (542)
T ss_pred ---------------------------------HHHhhhhccCCchHHHHHHhc--ccceeeecc----CCCCCCceEEE
Confidence 000111236799999999998 888888864 89999999999
Q ss_pred EEEECCEEEeeeecCCHHHHHHHHHHHHHHHhhcccC-CCCCccCCCCCCCCCCCCCCCCcchhhhhcCC
Q 002970 780 QVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRSMFG-QFPQKHQGSPRSLQGMPNKRLKPEFPRVLQRM 848 (862)
Q Consensus 780 qV~IdGkvyG~GtGsSKKeAKqqAAe~AL~aL~~~~~-~~~pkrq~spr~~~g~~~~~l~q~~ad~v~r~ 848 (862)
+|+|||+.|..| |+|||+||++||.+||+.|+.+.- ...+.+. +. ...++.|++.|.++
T Consensus 122 ~~~vdg~~~~~~-~~sKk~ak~~aa~~al~~l~~~~~~~~~~~~~--------~~-~e~~~~~~~~Ia~l 181 (542)
T KOG2777|consen 122 SVVVDGRWFEGG-GRSKKEAKQEAAMAALQVLFKIDENPERPSEA--------LT-LENPSTLGDEIAEL 181 (542)
T ss_pred EEEECCEEccCC-CcchHHHHHHHHHHHHHHHHhccCCccccccc--------cc-ccCCChHHHHHHHH
Confidence 999999999666 999999999999999999998763 3333111 11 46677888877654
No 18
>PRK12371 ribonuclease III; Reviewed
Probab=99.41 E-value=6.7e-13 Score=138.85 Aligned_cols=68 Identities=22% Similarity=0.221 Sum_probs=61.8
Q ss_pred CCchHHHHHHHHhcC-CCeEEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 002970 610 ETPSGVLQDIAMKCG-TKVEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLAN 677 (862)
Q Consensus 610 ~n~KS~LQE~~QK~~-~~l~Y~~v~~--~~Hdk~Ftv~V~i~G~~~G~G~GkSKKeAEq~AA~~AL~~L~~ 677 (862)
.+||+.||||||+++ ..++|+++.+ ++|++.|+|+|+|+|+.+|+|.|+|||+|||.||+.||++|..
T Consensus 161 ~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Ae~~AA~~al~~~~~ 231 (235)
T PRK12371 161 RDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETGEGRSKRAAEQVAAEKMLEREGV 231 (235)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHhhh
Confidence 479999999999876 5689998864 5799999999999999999999999999999999999999854
No 19
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=99.41 E-value=7.2e-13 Score=109.75 Aligned_cols=67 Identities=33% Similarity=0.417 Sum_probs=59.7
Q ss_pred chHHHHHHhhhcCCCceeeecCCCCCCCCCCccEEEEEEECCEEEeeeecCCHHHHHHHHHHHHHHHhh
Q 002970 744 SVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLR 812 (862)
Q Consensus 744 ~V~lLnELcqkeGL~~~f~~e~v~~sGp~H~keF~aqV~IdGkvyG~GtGsSKKeAKqqAAe~AL~aL~ 812 (862)
||+.|+|+|++.++.+.|... ...|+.|.+.|++.|.|+|+.++.|.|.|||+||++||+.||..|.
T Consensus 1 p~~~L~e~~~~~~~~~~y~~~--~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L~ 67 (67)
T smart00358 1 PKSLLQELAQKRGLPPEYELV--KEEGPDHAPRFTVTVKVGGEYTGEGEGSSKKEAKQRAAEAALRSLK 67 (67)
T ss_pred CchHHHHHHHHCCCCCEEEEE--eeeCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHhcC
Confidence 689999999999997667643 2368889999999999999999999999999999999999999873
No 20
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=99.37 E-value=2e-13 Score=144.91 Aligned_cols=119 Identities=22% Similarity=0.336 Sum_probs=94.4
Q ss_pred ceEEEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEec-cCC-Cccchhhhcc
Q 002970 161 TSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCV-KSG-SRKSLFNVFQ 238 (862)
Q Consensus 161 ~~~~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisr-es~-~~KsL~~lfp 238 (862)
..+||+.||++.+ ||. +++++||+.|||.+...||..|+.+|||++++|. +++.|=.|. .+| ..|+|..+-
T Consensus 126 ~~~yV~kRP~vde---FL~-~~s~~~e~v~FTAs~~~Ya~~v~D~LD~~~~i~~--~RlyR~~C~~~~g~yvKdls~~~- 198 (262)
T KOG1605|consen 126 HQVYVRKRPHVDE---FLS-RVSKWYELVLFTASLEVYADPLLDILDPDRKIIS--HRLYRDSCTLKDGNYVKDLSVLG- 198 (262)
T ss_pred eEEEEEcCCCHHH---HHH-HhHHHHHHHHHHhhhHHHHHHHHHHccCCCCeee--eeecccceEeECCcEEEEcceec-
Confidence 3599999999999 999 9999999999999999999999999999999998 455565666 334 679996665
Q ss_pred CCCCCCcEEEEEcCCcccCCCCCCCCeEEecccccccCchhhhccccchHHHHHHHHhhh
Q 002970 239 DGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNV 298 (862)
Q Consensus 239 ~~~~~~~~vVIIDDR~dVW~~~~~~~v~vV~~Y~pf~~~q~e~~~~~p~L~~a~~vl~~V 298 (862)
++.+-++||||....+..+.+|.|. |+.| |..+.+. .|...+..|+.+
T Consensus 199 ---~dL~~viIiDNsP~sy~~~p~NgIp-I~sw--~~d~~D~------eLL~LlpfLe~L 246 (262)
T KOG1605|consen 199 ---RDLSKVIIVDNSPQSYRLQPENGIP-IKSW--FDDPTDT------ELLKLLPFLEAL 246 (262)
T ss_pred ---cCcccEEEEcCChHHhccCccCCCc-cccc--ccCCChH------HHHHHHHHHHHh
Confidence 4678999999999999999888775 5554 3333322 366666666654
No 21
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=99.33 E-value=3.2e-12 Score=134.07 Aligned_cols=69 Identities=29% Similarity=0.498 Sum_probs=63.4
Q ss_pred CCchHHHHHHHHhcCC-CeEEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhh
Q 002970 610 ETPSGVLQDIAMKCGT-KVEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANV 678 (862)
Q Consensus 610 ~n~KS~LQE~~QK~~~-~l~Y~~v~~--~~Hdk~Ftv~V~i~G~~~G~G~GkSKKeAEq~AA~~AL~~L~~~ 678 (862)
.+|||.||||+|+.+. .+.|+++.. ++|++.|+|+|+++|+.+|+|.|+|||+|||.||+.||++|...
T Consensus 161 ~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G~G~skk~AEq~AA~~al~~l~~~ 232 (235)
T COG0571 161 KDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGRSKKEAEQAAAEQALKKLGVK 232 (235)
T ss_pred cChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEecccCHHHHHHHHHHHHHHHhccc
Confidence 6799999999999885 579999876 46999999999999999999999999999999999999999653
No 22
>PRK14718 ribonuclease III; Provisional
Probab=99.28 E-value=9e-12 Score=139.60 Aligned_cols=67 Identities=19% Similarity=0.245 Sum_probs=60.9
Q ss_pred CCchHHHHHHHHhcCCC-eEEEEeee--cCCCceEEEEEEECCE-EEEEeecCCHHHHHHHHHHHHHHHHH
Q 002970 610 ETPSGVLQDIAMKCGTK-VEFRPALV--ASTELQFSIEAWFAGE-KIGEGIGRTRREAQRQAAEGSIKHLA 676 (862)
Q Consensus 610 ~n~KS~LQE~~QK~~~~-l~Y~~v~~--~~Hdk~Ftv~V~i~G~-~~G~G~GkSKKeAEq~AA~~AL~~L~ 676 (862)
.+|||.||||||+++.. ++|+++.+ ++|++.|+|+|+|+|. .+|+|+|+|||+|||.||+.||++|.
T Consensus 151 kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G~G~SKKeAEQ~AAk~AL~kL~ 221 (467)
T PRK14718 151 KDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSGSGASRRAAEQAAAKKALDEVT 221 (467)
T ss_pred cCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 47899999999999865 79999865 6799999999999995 55999999999999999999999996
No 23
>PRK12372 ribonuclease III; Reviewed
Probab=99.25 E-value=1.8e-11 Score=136.23 Aligned_cols=68 Identities=19% Similarity=0.236 Sum_probs=60.9
Q ss_pred CCchHHHHHHHHhcCCC-eEEEEeee--cCCCceEEEEEEECCE-EEEEeecCCHHHHHHHHHHHHHHHHHh
Q 002970 610 ETPSGVLQDIAMKCGTK-VEFRPALV--ASTELQFSIEAWFAGE-KIGEGIGRTRREAQRQAAEGSIKHLAN 677 (862)
Q Consensus 610 ~n~KS~LQE~~QK~~~~-l~Y~~v~~--~~Hdk~Ftv~V~i~G~-~~G~G~GkSKKeAEq~AA~~AL~~L~~ 677 (862)
.+|||.||||+|+++.. ++|+++.+ ++|+++|+|+|+|+|. .+|+|.|+|||+|||+||+.||++|..
T Consensus 151 ~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~G~SKKeAEQ~AAr~AL~kL~~ 222 (413)
T PRK12372 151 KDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGSGASRRAAEQAAAKKALDEVMA 222 (413)
T ss_pred CCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 36899999999999865 79998865 5799999999999995 568999999999999999999999974
No 24
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=99.18 E-value=1e-10 Score=119.83 Aligned_cols=128 Identities=15% Similarity=0.123 Sum_probs=83.7
Q ss_pred EEEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCc-cccccccCeE--E---eccCC--Cccchh
Q 002970 163 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNL-INTKELLDRI--V---CVKSG--SRKSLF 234 (862)
Q Consensus 163 ~~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~l-Fg~~~l~~RI--i---sres~--~~KsL~ 234 (862)
+++..|||+++ ||+ .+++.||+.|||.+...||..+++.|++.+.- |....+.++- + +...| ..|.|.
T Consensus 42 ~~~~kRP~l~e---FL~-~~~~~feIvVwTAa~~~ya~~~l~~l~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKdL~ 117 (195)
T TIGR02245 42 GEELMRPYLHE---FLT-SAYEDYDIVIWSATSMKWIEIKMTELGVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKPLG 117 (195)
T ss_pred ceEEeCCCHHH---HHH-HHHhCCEEEEEecCCHHHHHHHHHHhcccCCccceEEEEeccccceeeEeeccCcEEEeecH
Confidence 45789999999 999 89999999999999999999999999764321 1111111221 1 11223 378999
Q ss_pred hhccCCC--CCCcEEEEEcCCcccCCCCCCCCeEEecccccccCchhhhccccchHHHHHHHHhhhc
Q 002970 235 NVFQDGT--CHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVR 299 (862)
Q Consensus 235 ~lfp~~~--~~~~~vVIIDDR~dVW~~~~~~~v~vV~~Y~pf~~~q~e~~~~~p~L~~a~~vl~~Vh 299 (862)
.+...-+ .+.+-+|||||.......+.+|.| .|++|. ....+ ...+-.|..++..|+.+.
T Consensus 118 ~lw~~l~~~~~~~ntiiVDd~p~~~~~~P~N~i-~I~~f~--~~~~~--~~~D~eL~~L~~yL~~la 179 (195)
T TIGR02245 118 VIWALLPEFYSMKNTIMFDDLRRNFLMNPQNGL-KIRPFK--KAHAN--RGTDQELLKLTQYLKTIA 179 (195)
T ss_pred HhhhhcccCCCcccEEEEeCCHHHHhcCCCCcc-ccCCcc--ccCCC--CcccHHHHHHHHHHHHHh
Confidence 8853211 256789999999999988866655 566662 11101 112224666666666653
No 25
>PRK12371 ribonuclease III; Reviewed
Probab=99.16 E-value=5.6e-11 Score=124.51 Aligned_cols=72 Identities=19% Similarity=0.106 Sum_probs=62.0
Q ss_pred CCCchHHHHHHhhhcCCCceeeecCCCCCCCCCCccEEEEEEECCEEEeeeecCCHHHHHHHHHHHHHHHhhc
Q 002970 741 LMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRS 813 (862)
Q Consensus 741 ~~N~V~lLnELcqkeGL~~~f~~e~v~~sGp~H~keF~aqV~IdGkvyG~GtGsSKKeAKqqAAe~AL~aL~~ 813 (862)
..||++.|||+||+.+...+-|.. +..+||+|.+.|++.|.|+|+.+|+|+|+|||+|+|.||+.||..|..
T Consensus 160 ~~d~Ks~LqE~~q~~~~~~p~Y~~-~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Ae~~AA~~al~~~~~ 231 (235)
T PRK12371 160 RRDAKTELQEWAHAQFGVTPVYRV-DSRSGPDHDPRFTVEVEVKGFAPETGEGRSKRAAEQVAAEKMLEREGV 231 (235)
T ss_pred cCCHHHHHHHHHHhcCCCCCeEEE-EEeecCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHhhh
Confidence 359999999999987665543332 346799999999999999999999999999999999999999998854
No 26
>PRK00102 rnc ribonuclease III; Reviewed
Probab=99.15 E-value=1.2e-10 Score=119.53 Aligned_cols=70 Identities=24% Similarity=0.420 Sum_probs=62.2
Q ss_pred CCCCchHHHHHHHHhcCCC-eEEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 002970 608 STETPSGVLQDIAMKCGTK-VEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLAN 677 (862)
Q Consensus 608 ~~~n~KS~LQE~~QK~~~~-l~Y~~v~~--~~Hdk~Ftv~V~i~G~~~G~G~GkSKKeAEq~AA~~AL~~L~~ 677 (862)
...+||+.||||||+++.. ++|+++.+ +.|.+.|+++|+++|+.+|+|.|+|||+||++||+.||+.|..
T Consensus 156 ~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~skk~Ae~~AA~~Al~~l~~ 228 (229)
T PRK00102 156 LVKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGTGSSKKEAEQAAAKQALKKLKE 228 (229)
T ss_pred ccCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhh
Confidence 3457999999999998864 79998754 4578999999999999999999999999999999999999854
No 27
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=99.15 E-value=8.1e-11 Score=123.62 Aligned_cols=71 Identities=28% Similarity=0.350 Sum_probs=66.5
Q ss_pred CCchHHHHHHhhhcCCCceeeecCCCCCCCCCCccEEEEEEECCEEEeeeecCCHHHHHHHHHHHHHHHhhc
Q 002970 742 MGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRS 813 (862)
Q Consensus 742 ~N~V~lLnELcqkeGL~~~f~~e~v~~sGp~H~keF~aqV~IdGkvyG~GtGsSKKeAKqqAAe~AL~aL~~ 813 (862)
+||++.|||+||..+...+-|.. +..+|++|++.|++.|.|+|.++|+|.|+|||+|+|.||+.||..|..
T Consensus 161 ~D~Kt~LQe~~q~~~~~~p~Y~~-v~~~g~~h~~~F~v~v~v~~~~~g~G~G~skk~AEq~AA~~al~~l~~ 231 (235)
T COG0571 161 KDPKTRLQELLQAQGLVLPEYRL-VKEEGPAHDKEFTVEVAVGGKELGTGKGRSKKEAEQAAAEQALKKLGV 231 (235)
T ss_pred cChhHHHHHHHHhcCCCCCeEEE-eeccCCCCCceEEEEEEECCeeEEEecccCHHHHHHHHHHHHHHHhcc
Confidence 69999999999999999997766 666799999999999999999999999999999999999999999864
No 28
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=99.10 E-value=2.5e-10 Score=116.19 Aligned_cols=68 Identities=28% Similarity=0.459 Sum_probs=60.7
Q ss_pred CCCCchHHHHHHHHhcCC-CeEEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 002970 608 STETPSGVLQDIAMKCGT-KVEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHL 675 (862)
Q Consensus 608 ~~~n~KS~LQE~~QK~~~-~l~Y~~v~~--~~Hdk~Ftv~V~i~G~~~G~G~GkSKKeAEq~AA~~AL~~L 675 (862)
...+||+.||||||+++. .++|+++.+ +.|.+.|++.|+++|+.+|+|.|.|||+||++||+.||++|
T Consensus 150 ~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g~g~skk~A~~~AA~~Al~~l 220 (220)
T TIGR02191 150 TLKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKGKSKKEAEQNAAKAALEKL 220 (220)
T ss_pred ccCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHhC
Confidence 356899999999999875 689998744 46889999999999999999999999999999999999875
No 29
>PRK00102 rnc ribonuclease III; Reviewed
Probab=99.06 E-value=3.5e-10 Score=116.13 Aligned_cols=73 Identities=27% Similarity=0.367 Sum_probs=63.6
Q ss_pred CCCCchHHHHHHhhhcCCCceeeecCCCCCCCCCCccEEEEEEECCEEEeeeecCCHHHHHHHHHHHHHHHhhc
Q 002970 740 KLMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRS 813 (862)
Q Consensus 740 ~~~N~V~lLnELcqkeGL~~~f~~e~v~~sGp~H~keF~aqV~IdGkvyG~GtGsSKKeAKqqAAe~AL~aL~~ 813 (862)
...||++.|+|+|++.++..+.+.. +..+|+.|.+.|+++|.|+|+.+|.|.|.|||+||++||+.||..|..
T Consensus 156 ~~~~pk~~L~e~~~~~~~~~p~y~~-~~~~g~~~~~~f~~~v~i~~~~~~~g~g~skk~Ae~~AA~~Al~~l~~ 228 (229)
T PRK00102 156 LVKDYKTRLQELLQGRGLPLPEYEL-VKEEGPAHDKEFTVEVTVNGKELGEGTGSSKKEAEQAAAKQALKKLKE 228 (229)
T ss_pred ccCCHHHHHHHHHHHcCCCCCceEE-eeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhh
Confidence 3469999999999999987654432 345788999999999999999999999999999999999999999863
No 30
>PRK14718 ribonuclease III; Provisional
Probab=99.06 E-value=3.1e-10 Score=127.48 Aligned_cols=86 Identities=15% Similarity=0.146 Sum_probs=72.1
Q ss_pred CCCchHHHHHHhhhcCCCceeeecCCCCCCCCCCccEEEEEEECCE-EEeeeecCCHHHHHHHHHHHHHHHhhcccC--C
Q 002970 741 LMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQ-VLGKGIGSTWDEAKMQAAEKALGSLRSMFG--Q 817 (862)
Q Consensus 741 ~~N~V~lLnELcqkeGL~~~f~~e~v~~sGp~H~keF~aqV~IdGk-vyG~GtGsSKKeAKqqAAe~AL~aL~~~~~--~ 817 (862)
..||++.||||||+.++..+.|.. +..+|++|.+.|++.|.|+|. .+|+|+|+|||+|+|.||+.||..|..... -
T Consensus 150 ~kDyKS~LQE~~Qk~~~~~PeY~l-i~esGPdH~k~F~V~V~v~g~~~~G~G~G~SKKeAEQ~AAk~AL~kL~~~~~~~~ 228 (467)
T PRK14718 150 GKDAKTLLQEYLQGHKIALPTYTV-VATHGAAHNQQFEVECTVPKLDIKVSGSGASRRAAEQAAAKKALDEVTAVAPMLA 228 (467)
T ss_pred ccCHHHHHHHHHHhcCCCCCeeEE-eeeecCCCCCeEEEEEEECCeeeEEEEEcCCHHHHHHHHHHHHHHHhcccchhhh
Confidence 359999999999999998875544 456899999999999999995 569999999999999999999999974432 4
Q ss_pred CCCccCCCCC
Q 002970 818 FPQKHQGSPR 827 (862)
Q Consensus 818 ~~pkrq~spr 827 (862)
..++|..+-|
T Consensus 229 ~~~~~~~~~~ 238 (467)
T PRK14718 229 AKPKRSKSAR 238 (467)
T ss_pred hhhhcccccc
Confidence 4567776665
No 31
>PRK12372 ribonuclease III; Reviewed
Probab=99.05 E-value=4.1e-10 Score=125.68 Aligned_cols=86 Identities=15% Similarity=0.126 Sum_probs=73.3
Q ss_pred CCCchHHHHHHhhhcCCCceeeecCCCCCCCCCCccEEEEEEECC-EEEeeeecCCHHHHHHHHHHHHHHHhhccc--CC
Q 002970 741 LMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDG-QVLGKGIGSTWDEAKMQAAEKALGSLRSMF--GQ 817 (862)
Q Consensus 741 ~~N~V~lLnELcqkeGL~~~f~~e~v~~sGp~H~keF~aqV~IdG-kvyG~GtGsSKKeAKqqAAe~AL~aL~~~~--~~ 817 (862)
..||++.||||||+.++..+.|.. +..+|+.|.+.|++.|.|+| ..+|+|+|+|||+|+|+||+.||..|.... .-
T Consensus 150 ~~D~KS~LQE~~Q~~~~~~P~Y~l-v~e~Gp~h~~~F~V~V~v~g~~~~g~G~G~SKKeAEQ~AAr~AL~kL~~~~~~~~ 228 (413)
T PRK12372 150 GKDAKTLLQEYLQGHKIALPTYTV-VATHGAAHNQQFEVECTVPKLDVKVSGSGASRRAAEQAAAKKALDEVMAAAPMLA 228 (413)
T ss_pred cCCHHHHHHHHHHhcCCCCCeeEE-eeeecCCCCceEEEEEEECCeEEEEEEEeCCHHHHHHHHHHHHHHHHhcccchhc
Confidence 459999999999999998775543 45689999999999999998 567999999999999999999999998432 36
Q ss_pred CCCccCCCCC
Q 002970 818 FPQKHQGSPR 827 (862)
Q Consensus 818 ~~pkrq~spr 827 (862)
..|||+.+-|
T Consensus 229 ~~~~~~~~~~ 238 (413)
T PRK12372 229 AKPKRSKNAR 238 (413)
T ss_pred cccccccccc
Confidence 6788887766
No 32
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=98.99 E-value=9.5e-10 Score=112.01 Aligned_cols=70 Identities=26% Similarity=0.365 Sum_probs=60.5
Q ss_pred CCCCchHHHHHHhhhcCCCc-eeeecCCCCCCCCCCccEEEEEEECCEEEeeeecCCHHHHHHHHHHHHHHHh
Q 002970 740 KLMGSVSALKELCMTEGLGV-VFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSL 811 (862)
Q Consensus 740 ~~~N~V~lLnELcqkeGL~~-~f~~e~v~~sGp~H~keF~aqV~IdGkvyG~GtGsSKKeAKqqAAe~AL~aL 811 (862)
...||++.|+|+|++.++.. .|.. ....|+.|.+.|+++|.++|+.+|+|+|.|||+||++||+.||..|
T Consensus 150 ~~~~pk~~L~e~~~~~~~~~p~y~~--~~~~g~~~~~~f~~~v~~~~~~~~~g~g~skk~A~~~AA~~Al~~l 220 (220)
T TIGR02191 150 TLKDYKTALQEWAQARGKPLPEYRL--IKEEGPDHDKEFTVEVSVNGEPYGEGKGKSKKEAEQNAAKAALEKL 220 (220)
T ss_pred ccCChHHHHHHHHHHcCCCCceEEE--ecccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHhC
Confidence 34699999999999888754 4543 2346888999999999999999999999999999999999999875
No 33
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=98.88 E-value=2.9e-09 Score=115.82 Aligned_cols=71 Identities=23% Similarity=0.264 Sum_probs=63.5
Q ss_pred CCchHHHHHHhhhcCCCceeeecCCCCCCCCCCccEEEEEEECCEEEeeeecCCHHHHHHHHHHHHHHHhhccc
Q 002970 742 MGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRSMF 815 (862)
Q Consensus 742 ~N~V~lLnELcqkeGL~~~f~~e~v~~sGp~H~keF~aqV~IdGkvyG~GtGsSKKeAKqqAAe~AL~aL~~~~ 815 (862)
+.+|..|+|+|.+.|+.++|.- ..+.|+.|.+.|++.|+|+.. -..|.|+|||.||+.||..+|..|+-..
T Consensus 38 KS~IS~l~E~~~r~~~~v~fev--l~eeGp~H~~~fv~rvtvg~~-~a~GeG~sKK~AKh~AA~~~L~~lk~l~ 108 (339)
T KOG3732|consen 38 KSPISLLQEYGLRRGLTPVYEV--LREEGPPHMPNFVFRVTVGEI-TATGEGKSKKLAKHRAAEALLKELKKLP 108 (339)
T ss_pred CChHHHHHHHHHHhCCCcceee--eeccCCccCCCeEEEEEEeee-EEecCCCchhHHHHHHHHHHHHHHhcCC
Confidence 6899999999999999999885 356899999999999999855 4599999999999999999999997553
No 34
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=98.84 E-value=4.8e-09 Score=93.62 Aligned_cols=69 Identities=30% Similarity=0.289 Sum_probs=58.7
Q ss_pred CCchHHHHHHhhhcCCCceeeecCCCCCCCCCCccEEEEEEECCEEEe----------eeecCCHHHHHHHHHHHHHHHh
Q 002970 742 MGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLG----------KGIGSTWDEAKMQAAEKALGSL 811 (862)
Q Consensus 742 ~N~V~lLnELcqkeGL~~~f~~e~v~~sGp~H~keF~aqV~IdGkvyG----------~GtGsSKKeAKqqAAe~AL~aL 811 (862)
+++++.|+|+|++.+|+.+-+.. ..+.||+|.+.|+++|+|.+..+. .=--.+||+||..||+.||..|
T Consensus 1 k~a~~~L~elC~k~~W~~P~y~l-~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~L 79 (80)
T PF14709_consen 1 KSAVSLLNELCQKNKWGPPVYEL-VSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQAL 79 (80)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEE-EeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhc
Confidence 36899999999999999995544 357899999999999999988773 2234789999999999999987
No 35
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=98.69 E-value=6.6e-08 Score=108.88 Aligned_cols=185 Identities=16% Similarity=0.181 Sum_probs=111.9
Q ss_pred cCCCCCCchHHHHHHHHhcCC-CeEEEEeeecCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhhccc
Q 002970 605 DVSSTETPSGVLQDIAMKCGT-KVEFRPALVASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANVYMLRV 683 (862)
Q Consensus 605 ~~~~~~n~KS~LQE~~QK~~~-~l~Y~~v~~~~Hdk~Ftv~V~i~G~~~G~G~GkSKKeAEq~AA~~AL~~L~~~~~a~~ 683 (862)
.+.+.+.....|+||+|.+.. .+.|+.-......-.|...|.+|+-.||.|.|.|||.|+..||+.+|++|........
T Consensus 370 ~npngks~vCiLhEy~q~~lk~~pvyef~e~~n~stpysa~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLIPd~~~~~ 449 (650)
T KOG4334|consen 370 ANPNGKSKVCILHEYAQQCLKSLPVYEFAENDNNSTPYSAGVLPDLFPYGSGVGASKKTAKLVAARDTLEILIPDLRVSE 449 (650)
T ss_pred eCCCCceeeehHHHHHHHHhhhcceeehhhccCCCCcccccccccccccccccccchHHHHHHHHHHHHHHhcchhhhcc
Confidence 344555668999999999875 5789765445567889999999999999999999999999999999999987654222
Q ss_pred cCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCcCCccccCCcCCCCchHHHHHHh-hhcCCC-cee
Q 002970 684 KSDSGSGHGDGSRFSNANENCFMGEINSFGGQPLAKDESLSSEPSKLVDPRLEGSKKLMGSVSALKELC-MTEGLG-VVF 761 (862)
Q Consensus 684 ~~~~~~~~sD~~~~p~~~eN~f~~~~~s~~~~~~~~~d~~ss~~srl~~~~ld~~~~~~N~V~lLnELc-qkeGL~-~~f 761 (862)
.+.| |.-.-.+++..+|+.-- .+..+ +.+|+.... +....-.|-.+|.+-. ...||+ +..
T Consensus 450 ~n~~-----d~k~~~~~k~q~~le~F----------~~I~I-edprv~e~c--tk~~~psPy~iL~~cl~Rn~g~~d~~i 511 (650)
T KOG4334|consen 450 DNVC-----DGKVEEDGKQQGFLELF----------KKIKI-EDPRVVEMC--TKCAIPSPYNILRDCLSRNLGWNDLVI 511 (650)
T ss_pred cccc-----cccccccccchhHHHHh----------hcccc-cCchHHHHh--hhcCCCCHHHHHHHHHHhhcCCcceee
Confidence 1111 11110011111111110 00000 111111000 0112335666665533 334553 222
Q ss_pred eecCCCCCCCCCCccEEEEEEECCEEEeeeecCCHHHHHHHHHHHHHHHhh
Q 002970 762 QQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLR 812 (862)
Q Consensus 762 ~~e~v~~sGp~H~keF~aqV~IdGkvyG~GtGsSKKeAKqqAAe~AL~aL~ 812 (862)
..+ +- .++...-+|+|.| |+.-.+|+..+|+++||.|.|.-|+.|.
T Consensus 512 k~E-~i-~~~nqkse~im~~---Gkht~~~~cknkr~gkQlASQ~ilq~lH 557 (650)
T KOG4334|consen 512 KKE-MI-GNGNQKSEVIMIL---GKHTEEAECKNKRQGKQLASQRILQKLH 557 (650)
T ss_pred eee-cc-CCCCccceeEeee---ccceeeeeeechhHHHHHHHHHHHHHhC
Confidence 222 11 3444556788765 5555699999999999999999888874
No 36
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=98.37 E-value=8.4e-07 Score=79.35 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=54.7
Q ss_pred CchHHHHHHHHhcCC-CeEEEEeee--cCCCceEEEEEEECCEEEE----------EeecCCHHHHHHHHHHHHHHHH
Q 002970 611 TPSGVLQDIAMKCGT-KVEFRPALV--ASTELQFSIEAWFAGEKIG----------EGIGRTRREAQRQAAEGSIKHL 675 (862)
Q Consensus 611 n~KS~LQE~~QK~~~-~l~Y~~v~~--~~Hdk~Ftv~V~i~G~~~G----------~G~GkSKKeAEq~AA~~AL~~L 675 (862)
.+++.|+|+|+|++. .+.|++..+ ++|.+.|+..|.|++..+. .=--.+||+|+..||+.||..|
T Consensus 2 ~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~L 79 (80)
T PF14709_consen 2 SAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQAL 79 (80)
T ss_pred CHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhc
Confidence 578999999999985 579999754 6799999999999998873 1223689999999999999887
No 37
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=98.00 E-value=1.6e-05 Score=89.46 Aligned_cols=69 Identities=16% Similarity=0.407 Sum_probs=57.1
Q ss_pred CchHHHHHHHHhcC----C--Ce-EEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhh
Q 002970 611 TPSGVLQDIAMKCG----T--KV-EFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANVY 679 (862)
Q Consensus 611 n~KS~LQE~~QK~~----~--~l-~Y~~v~~--~~Hdk~Ftv~V~i~G~~~G~G~GkSKKeAEq~AA~~AL~~L~~~~ 679 (862)
.+|++||.+|-... . .+ .|.+++. +.+++.|+|+|+++|+.+|+|+|.|.|.|+..||+.||+.++..+
T Consensus 428 dpkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat~~G~nik~Ae~rAA~~ALe~~~~dF 505 (533)
T KOG1817|consen 428 DPKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLATGVGSNIKQAEMRAAMQALENLKMDF 505 (533)
T ss_pred CcHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEeeccCchHhHHHHHHHHHHHHHHHhhh
Confidence 47999999994432 1 23 5666554 568999999999999999999999999999999999999997533
No 38
>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]
Probab=97.96 E-value=7.4e-06 Score=96.09 Aligned_cols=187 Identities=18% Similarity=0.139 Sum_probs=115.1
Q ss_pred CeEEE------Eeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhhc--cccCCCCCCCCCCC
Q 002970 626 KVEFR------PALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANVYML--RVKSDSGSGHGDGS 695 (862)
Q Consensus 626 ~l~Y~------~v~~--~~Hdk~Ftv~V~i~G~~~G~G~GkSKKeAEq~AA~~AL~~L~~~~~a--~~~~~~~~~~sD~~ 695 (862)
.+.|+ ++.. |.|.++|+++|.+||..+ +..|.|||.|+..||++-|+...--..+ ... .--.|+.
T Consensus 385 rLQYk~kv~p~Lvv~t~P~~~~~~t~e~r~~~~~~-~a~gps~~~~~wh~~~k~lq~~~~p~ga~~r~~----~~ge~~a 459 (816)
T KOG3792|consen 385 RLQYKQKVDPDLVVDTKPSHRPRRTMEVRVNGLPA-EAEGPSKKTAKWHAARKRLQNEGRPTGAAQRFG----RMGEDPA 459 (816)
T ss_pred cceeccccCCCceeccCCcccchhhhhhhhcCCcc-ccCCcccccchHHHHHHHhhccCCCcccccccc----ccCCCcc
Confidence 36677 5543 679999999999999998 8899999999999999988776311110 000 0011222
Q ss_pred CCCCcccccccCCC----C--CCCCCCCCCCCCCCCCCCCcCCccccCCcCCCCchHHHHHHhhhcCCCceeeecCCCCC
Q 002970 696 RFSNANENCFMGEI----N--SFGGQPLAKDESLSSEPSKLVDPRLEGSKKLMGSVSALKELCMTEGLGVVFQQQPPSSA 769 (862)
Q Consensus 696 ~~p~~~eN~f~~~~----~--s~~~~~~~~~d~~ss~~srl~~~~ld~~~~~~N~V~lLnELcqkeGL~~~f~~e~v~~s 769 (862)
..|..+.-.+.+.- + ..+-.+. ++ +-+..+-+.+.++ ...+|+++.|+|- ..|+.|..-++ +
T Consensus 460 ~~p~~~~r~~as~ddr~a~~~~a~~~Pt--~~--~l~nVqr~vs~~~--~alK~vsd~L~Ek--~rg~k~El~se----t 527 (816)
T KOG3792|consen 460 SMPEPKGRRPASVDDRHANEKHAGIYPT--EE--ELENVQRQVSHLE--RALKLVSDELAEK--RRGDKYELPSE----T 527 (816)
T ss_pred cCCCCCCcccCCCcchhhhccccccCcc--HH--HHHHHHHhhhHHH--HhhcchhHHHhhh--ccccceecccc----c
Confidence 22222111111100 0 0000000 00 0000000111222 2567999999997 45888876654 4
Q ss_pred C-CCCCccEEEEEEECCEEEeeeecCCHHHHHHHHHHHHHHHhhcc----cCCCCCccCCCCCCCCCCC
Q 002970 770 N-SVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRSM----FGQFPQKHQGSPRSLQGMP 833 (862)
Q Consensus 770 G-p~H~keF~aqV~IdGkvyG~GtGsSKKeAKqqAAe~AL~aL~~~----~~~~~pkrq~spr~~~g~~ 833 (862)
| +.|.++|++-|+++|+.| .|.|.+||-||.-||-+|+..++.. ......|++ | .-+|..
T Consensus 528 ~~gs~~~R~v~gV~rvG~~a-kG~~~~gd~a~~~a~Lca~~pt~~l~~~ia~~~~kk~~--~-~~~~~~ 592 (816)
T KOG3792|consen 528 GTGSHDKRFVKGVMRVGILA-KGLLLNGDRAVELALLCAEKPTSGLLPRIANLLPKKLV--P-DAEGFV 592 (816)
T ss_pred CCCCCCceeeeeeeeeehhh-ccccccchHHHHHHHHhccCccccchHHHHhhcccccc--c-cccccc
Confidence 4 899999999999999999 9999999999999999998877643 334445555 3 344444
No 39
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=97.95 E-value=7.5e-05 Score=72.73 Aligned_cols=39 Identities=5% Similarity=0.224 Sum_probs=33.7
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhh
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLL 206 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlL 206 (862)
++++|++.+++.+|+ ...+.++|.|++.+.++..+++.+
T Consensus 71 ~~l~~g~~~ll~~l~---~~g~~~~i~S~~~~~~~~~~l~~~ 109 (188)
T TIGR01489 71 APIDPGFKEFIAFIK---EHGIDFIVISDGNDFFIDPVLEGI 109 (188)
T ss_pred CCCCccHHHHHHHHH---HcCCcEEEEeCCcHHHHHHHHHHc
Confidence 578899999888886 456999999999999999998874
No 40
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=97.79 E-value=5.9e-05 Score=83.75 Aligned_cols=119 Identities=15% Similarity=0.181 Sum_probs=90.1
Q ss_pred CCceEEEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEec----cCC-Cccch
Q 002970 159 RDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCV----KSG-SRKSL 233 (862)
Q Consensus 159 r~~~~~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisr----es~-~~KsL 233 (862)
..|.+-+|.|||+.- ||. .+++.|||.|||--.-.||.-++.-|||. .+|. .|+++- ++| ..|+|
T Consensus 207 ~~tGwRf~kRPgvD~---FL~-~~a~~yEIVi~sse~gmt~~pl~d~lDP~-g~Is-----YkLfr~~t~y~~G~HvKdl 276 (393)
T KOG2832|consen 207 YKTGWRFKKRPGVDY---FLG-HLAKYYEIVVYSSEQGMTVFPLLDALDPK-GYIS-----YKLFRGATKYEEGHHVKDL 276 (393)
T ss_pred hhcCceeccCchHHH---HHH-hhcccceEEEEecCCccchhhhHhhcCCc-ceEE-----EEEecCcccccCccchhhh
Confidence 456788999999998 998 99999999999999999999999999999 4566 677764 344 67999
Q ss_pred hhhccCCCCCCcEEEEEcCCcccCCCCCCCCeEEecccccccCchhhhccccchHHHHHHHHhhhcc
Q 002970 234 FNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRG 300 (862)
Q Consensus 234 ~~lfp~~~~~~~~vVIIDDR~dVW~~~~~~~v~vV~~Y~pf~~~q~e~~~~~p~L~~a~~vl~~Vh~ 300 (862)
+.|-. +.+-|||||=......-+.. |-+.++++ .++.++..|......|+.||.
T Consensus 277 s~LNR----dl~kVivVd~d~~~~~l~P~-N~l~l~~W--------~Gn~dDt~L~dL~~FL~~ia~ 330 (393)
T KOG2832|consen 277 SKLNR----DLQKVIVVDFDANSYKLQPE-NMLPLEPW--------SGNDDDTSLFDLLAFLEYIAQ 330 (393)
T ss_pred hhhcc----ccceeEEEEccccccccCcc-cccccCcC--------CCCcccchhhhHHHHHHHHHH
Confidence 99885 68899999977766666643 45566666 122233356666666665553
No 41
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=97.77 E-value=0.00013 Score=73.59 Aligned_cols=81 Identities=16% Similarity=0.271 Sum_probs=56.0
Q ss_pred EEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-Ccc----chhhhcc
Q 002970 164 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQ 238 (862)
Q Consensus 164 ~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~-~~K----sL~~lfp 238 (862)
++++.|++.+++.+|+ .+-+.+.|.|++.+.++...++. ++...+|+.|++.++. ..| .+..++.
T Consensus 92 ~~~~~~g~~~~L~~L~---~~g~~~~i~Tn~~~~~~~~~l~~-------~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~ 161 (221)
T TIGR02253 92 YLRVYPGVRDTLMELR---ESGYRLGIITDGLPVKQWEKLER-------LGVRDFFDAVITSEEEGVEKPHPKIFYAALK 161 (221)
T ss_pred hCCCCCCHHHHHHHHH---HCCCEEEEEeCCchHHHHHHHHh-------CChHHhccEEEEeccCCCCCCCHHHHHHHHH
Confidence 4688999999888776 44688999999999999888877 4445566788887432 222 2222222
Q ss_pred CCCCCCcEEEEEcCCc
Q 002970 239 DGTCHPKMALVIDDRL 254 (862)
Q Consensus 239 ~~~~~~~~vVIIDDR~ 254 (862)
.-...++-+|+|+|+.
T Consensus 162 ~~~~~~~~~~~igDs~ 177 (221)
T TIGR02253 162 RLGVKPEEAVMVGDRL 177 (221)
T ss_pred HcCCChhhEEEECCCh
Confidence 2124667899999985
No 42
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=97.70 E-value=0.0001 Score=74.71 Aligned_cols=100 Identities=17% Similarity=0.135 Sum_probs=67.9
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCC-cHHHHHHHHHhhC--CCCCccccccccCeEEeccCC-CccchhhhccCC
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMA-ERDYALEMWRLLD--PESNLINTKELLDRIVCVKSG-SRKSLFNVFQDG 240 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG-~R~YA~~I~rlLD--P~g~lFg~~~l~~RIisres~-~~KsL~~lfp~~ 240 (862)
++++||+.+++.+|+ ++-+.+.|.|++ .+.|+..+++.++ =.|+.+....+|+.|++-++. ..|....++...
T Consensus 44 ~~l~pGv~elL~~Lk---~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~ 120 (174)
T TIGR01685 44 VTLIKEVRDVLQTLK---DAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKV 120 (174)
T ss_pred EEEcccHHHHHHHHH---HCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHh
Confidence 678899999888887 577999999988 9999999999977 335444444666787776543 334332322210
Q ss_pred ------CCCCcEEEEEcCCcccCCCCCCCCeEE
Q 002970 241 ------TCHPKMALVIDDRLKVWDDKDQPRVHV 267 (862)
Q Consensus 241 ------~~~~~~vVIIDDR~dVW~~~~~~~v~v 267 (862)
...++-+++|||+..-........+.+
T Consensus 121 ~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~ 153 (174)
T TIGR01685 121 NKVDPSVLKPAQILFFDDRTDNVREVWGYGVTS 153 (174)
T ss_pred hhcccCCCCHHHeEEEcChhHhHHHHHHhCCEE
Confidence 156788999999976544433344443
No 43
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=97.65 E-value=8.7e-05 Score=86.16 Aligned_cols=66 Identities=21% Similarity=0.347 Sum_probs=57.2
Q ss_pred CCCchHHHHHHHHhcCCCeEEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhh
Q 002970 609 TETPSGVLQDIAMKCGTKVEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANVY 679 (862)
Q Consensus 609 ~~n~KS~LQE~~QK~~~~l~Y~~v~~--~~Hdk~Ftv~V~i~G~~~G~G~GkSKKeAEq~AA~~AL~~L~~~~ 679 (862)
..|+.+.|.||++ .+.|..+.. +.|.+.|.+.|.|||+.+..| |+|||+|+++||..||+.|....
T Consensus 89 ~~npv~ll~e~~~----~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~~-~~sKk~ak~~aa~~al~~l~~~~ 156 (542)
T KOG2777|consen 89 GKNPVSLLHELAN----GLFFDFVNESGPQHAPKFVMSVVVDGRWFEGG-GRSKKEAKQEAAMAALQVLFKID 156 (542)
T ss_pred cCCchHHHHHHhc----ccceeeeccCCCCCCceEEEEEEECCEEccCC-CcchHHHHHHHHHHHHHHHHhcc
Confidence 5689999999999 556666554 568999999999999999777 99999999999999999997643
No 44
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=97.64 E-value=5.9e-05 Score=71.03 Aligned_cols=81 Identities=16% Similarity=0.217 Sum_probs=58.5
Q ss_pred EEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-Cc----cchhhhcc
Q 002970 164 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SR----KSLFNVFQ 238 (862)
Q Consensus 164 ~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~-~~----KsL~~lfp 238 (862)
..++.|++.+++..|+ ++.|.++|+|++.+.+...+++-+ +...+++.|++.++. .. .-+..+..
T Consensus 75 ~~~~~~~~~~~L~~l~---~~~~~~~i~Sn~~~~~~~~~l~~~-------~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~ 144 (176)
T PF13419_consen 75 KLQPYPGVRELLERLK---AKGIPLVIVSNGSRERIERVLERL-------GLDDYFDEIISSDDVGSRKPDPDAYRRALE 144 (176)
T ss_dssp GEEESTTHHHHHHHHH---HTTSEEEEEESSEHHHHHHHHHHT-------THGGGCSEEEEGGGSSSSTTSHHHHHHHHH
T ss_pred ccchhhhhhhhhhhcc---cccceeEEeecCCccccccccccc-------ccccccccccccchhhhhhhHHHHHHHHHH
Confidence 3788899999666665 578999999999999999999985 434556788887532 22 22444433
Q ss_pred CCCCCCcEEEEEcCCc
Q 002970 239 DGTCHPKMALVIDDRL 254 (862)
Q Consensus 239 ~~~~~~~~vVIIDDR~ 254 (862)
...+.++-+|+|||+.
T Consensus 145 ~~~~~p~~~~~vgD~~ 160 (176)
T PF13419_consen 145 KLGIPPEEILFVGDSP 160 (176)
T ss_dssp HHTSSGGGEEEEESSH
T ss_pred HcCCCcceEEEEeCCH
Confidence 2236778899999985
No 45
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=97.58 E-value=9.9e-05 Score=77.17 Aligned_cols=80 Identities=13% Similarity=0.201 Sum_probs=57.4
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-Ccc----chhhhccC
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQD 239 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~-~~K----sL~~lfp~ 239 (862)
+++.||+.+++.+|+ ++-|.+.|.|++.+.++..+++. ++...+|+.|+|.++. ..| -+..+...
T Consensus 107 ~~l~pgv~e~L~~L~---~~g~~l~I~Tn~~~~~~~~~l~~-------~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~ 176 (248)
T PLN02770 107 LKPLNGLYKLKKWIE---DRGLKRAAVTNAPRENAELMISL-------LGLSDFFQAVIIGSECEHAKPHPDPYLKALEV 176 (248)
T ss_pred CCcCccHHHHHHHHH---HcCCeEEEEeCCCHHHHHHHHHH-------cCChhhCcEEEecCcCCCCCCChHHHHHHHHH
Confidence 567799999888887 56799999999999999999998 4555566788887642 111 12222221
Q ss_pred CCCCCcEEEEEcCCc
Q 002970 240 GTCHPKMALVIDDRL 254 (862)
Q Consensus 240 ~~~~~~~vVIIDDR~ 254 (862)
..+.++-+++|+|+.
T Consensus 177 ~~~~~~~~l~vgDs~ 191 (248)
T PLN02770 177 LKVSKDHTFVFEDSV 191 (248)
T ss_pred hCCChhHEEEEcCCH
Confidence 125677889999986
No 46
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=97.58 E-value=0.00016 Score=73.17 Aligned_cols=81 Identities=17% Similarity=0.143 Sum_probs=56.5
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCC-CCccccccccCeEEeccCC-Cc----cchhhhcc
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPE-SNLINTKELLDRIVCVKSG-SR----KSLFNVFQ 238 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~-g~lFg~~~l~~RIisres~-~~----KsL~~lfp 238 (862)
+++.||+.+++..|+ ++.|.+.|.|++.+.++..+++.++=. +.+| +.|+|.++- .. .-+..++.
T Consensus 86 ~~l~~G~~~~L~~L~---~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f------~~i~~~~~~~~~KP~p~~~~~a~~ 156 (220)
T TIGR03351 86 PVALPGAEEAFRSLR---SSGIKVALTTGFDRDTAERLLEKLGWTVGDDV------DAVVCPSDVAAGRPAPDLILRAME 156 (220)
T ss_pred CccCCCHHHHHHHHH---HCCCEEEEEeCCchHHHHHHHHHhhhhhhccC------CEEEcCCcCCCCCCCHHHHHHHHH
Confidence 478899999888886 567999999999999999999985432 1444 578887542 11 22333333
Q ss_pred CCCCC-CcEEEEEcCCc
Q 002970 239 DGTCH-PKMALVIDDRL 254 (862)
Q Consensus 239 ~~~~~-~~~vVIIDDR~ 254 (862)
...+. ++-+|+|+|+.
T Consensus 157 ~~~~~~~~~~~~igD~~ 173 (220)
T TIGR03351 157 LTGVQDVQSVAVAGDTP 173 (220)
T ss_pred HcCCCChhHeEEeCCCH
Confidence 22244 57899999984
No 47
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=97.56 E-value=0.00038 Score=69.90 Aligned_cols=80 Identities=15% Similarity=0.153 Sum_probs=56.7
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-----CccchhhhccC
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-----SRKSLFNVFQD 239 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~-----~~KsL~~lfp~ 239 (862)
+++.|++.+++.+|+ +.-|.+.|+|++.+.++..+++.+ +..++|+.|++.++. +..-+..+...
T Consensus 74 ~~~~~g~~~~L~~L~---~~g~~~~i~Sn~~~~~~~~~l~~~-------~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~ 143 (205)
T TIGR01454 74 VEVFPGVPELLAELR---ADGVGTAIATGKSGPRARSLLEAL-------GLLPLFDHVIGSDEVPRPKPAPDIVREALRL 143 (205)
T ss_pred cccCCCHHHHHHHHH---HCCCeEEEEeCCchHHHHHHHHHc-------CChhheeeEEecCcCCCCCCChHHHHHHHHH
Confidence 677899999888887 457999999999999999988874 334455678876542 11223333322
Q ss_pred CCCCCcEEEEEcCCc
Q 002970 240 GTCHPKMALVIDDRL 254 (862)
Q Consensus 240 ~~~~~~~vVIIDDR~ 254 (862)
..+.++-+++|+|+.
T Consensus 144 ~~~~~~~~l~igD~~ 158 (205)
T TIGR01454 144 LDVPPEDAVMVGDAV 158 (205)
T ss_pred cCCChhheEEEcCCH
Confidence 225667799999985
No 48
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=97.56 E-value=0.00058 Score=68.29 Aligned_cols=82 Identities=18% Similarity=0.155 Sum_probs=57.8
Q ss_pred EEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-Ccc----chhhhcc
Q 002970 164 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQ 238 (862)
Q Consensus 164 ~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~-~~K----sL~~lfp 238 (862)
.+++.||+.+++..|+ .+-|.+.|+|++.+.++..+++.+ +...+|+.|+|.++. ..| .+..+..
T Consensus 83 ~~~~~~g~~~~L~~l~---~~g~~~~i~S~~~~~~~~~~l~~~-------~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~ 152 (213)
T TIGR01449 83 LTSVFPGVEATLGALR---AKGLRLGLVTNKPTPLARPLLELL-------GLAKYFSVLIGGDSLAQRKPHPDPLLLAAE 152 (213)
T ss_pred cCccCCCHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHc-------CcHhhCcEEEecCCCCCCCCChHHHHHHHH
Confidence 3678999999888886 456999999999999999999984 333455678887542 222 2333333
Q ss_pred CCCCCCcEEEEEcCCcc
Q 002970 239 DGTCHPKMALVIDDRLK 255 (862)
Q Consensus 239 ~~~~~~~~vVIIDDR~d 255 (862)
.....++-+++|+|+..
T Consensus 153 ~~~~~~~~~~~igDs~~ 169 (213)
T TIGR01449 153 RLGVAPQQMVYVGDSRV 169 (213)
T ss_pred HcCCChhHeEEeCCCHH
Confidence 22255677999999853
No 49
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=97.51 E-value=0.0005 Score=66.53 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=51.7
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEecc-CCCcc----chhhhccC
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVK-SGSRK----SLFNVFQD 239 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisre-s~~~K----sL~~lfp~ 239 (862)
+++.|++.+++..|+ .+-|.++|+|++.+.+ ..++.- ++...+|+.|++-+ .+..| .+..++..
T Consensus 84 ~~~~~g~~~~l~~l~---~~g~~~~i~Tn~~~~~-~~~~~~-------~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~ 152 (183)
T TIGR01509 84 LKPLPGVEPLLEALR---ARGKKLALLTNSPRDH-AVLVQE-------LGLRDLFDVVIFSGDVGRGKPDPDIYLLALKK 152 (183)
T ss_pred CccCcCHHHHHHHHH---HCCCeEEEEeCCchHH-HHHHHh-------cCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHH
Confidence 678899999666665 4568999999999999 555543 34344566777642 22222 23333332
Q ss_pred CCCCCcEEEEEcCCc
Q 002970 240 GTCHPKMALVIDDRL 254 (862)
Q Consensus 240 ~~~~~~~vVIIDDR~ 254 (862)
....++-+|+|||+.
T Consensus 153 ~~~~~~~~~~vgD~~ 167 (183)
T TIGR01509 153 LGLKPEECLFVDDSP 167 (183)
T ss_pred cCCCcceEEEEcCCH
Confidence 225678899999985
No 50
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=97.51 E-value=0.00066 Score=68.04 Aligned_cols=79 Identities=15% Similarity=0.028 Sum_probs=56.0
Q ss_pred eeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCCCcc----chhhhccCCC
Q 002970 166 RLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRK----SLFNVFQDGT 241 (862)
Q Consensus 166 KLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~~~K----sL~~lfp~~~ 241 (862)
+..|+..+++..|+ .+-+.+.|.|++.+.++..+++. ++...+|+.|++.++...| .+..++....
T Consensus 106 ~~~~~~~~~L~~l~---~~g~~~~i~T~~~~~~~~~~l~~-------~gl~~~f~~~~~~~~~~~KP~p~~~~~~~~~~~ 175 (197)
T TIGR01548 106 ETLLTPKGLLRELH---RAPKGMAVVTGRPRKDAAKFLTT-------HGLEILFPVQIWMEDCPPKPNPEPLILAAKALG 175 (197)
T ss_pred ccccCHHHHHHHHH---HcCCcEEEECCCCHHHHHHHHHH-------cCchhhCCEEEeecCCCCCcCHHHHHHHHHHhC
Confidence 45677789888886 45689999999999999999988 5555667788887653112 2222222223
Q ss_pred CCCcEEEEEcCCc
Q 002970 242 CHPKMALVIDDRL 254 (862)
Q Consensus 242 ~~~~~vVIIDDR~ 254 (862)
++++-+++|+|+.
T Consensus 176 ~~~~~~i~vGD~~ 188 (197)
T TIGR01548 176 VEACHAAMVGDTV 188 (197)
T ss_pred cCcccEEEEeCCH
Confidence 6677899999975
No 51
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=97.51 E-value=0.00014 Score=81.88 Aligned_cols=100 Identities=17% Similarity=0.256 Sum_probs=78.6
Q ss_pred ceEEEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-CccchhhhccC
Q 002970 161 TSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRKSLFNVFQD 239 (862)
Q Consensus 161 ~~~~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~-~~KsL~~lfp~ 239 (862)
..+||..||++.+ ||. .+++.|+++++|...+.||+.|+++||+.+ .|+..-+..+.+. ..| ..|+|..+..
T Consensus 247 ~~~~v~kRp~l~~---fl~-~ls~~~~l~~ft~s~~~y~~~v~d~l~~~k-~~~~~lfr~sc~~-~~G~~ikDis~i~r- 319 (390)
T COG5190 247 HLVYVSKRPELDY---FLG-KLSKIHELVYFTASVKRYADPVLDILDSDK-VFSHRLFRESCVS-YLGVYIKDISKIGR- 319 (390)
T ss_pred eEEEEcCChHHHH---HHh-hhhhhEEEEEEecchhhhcchHHHhccccc-eeehhhhccccee-ccCchhhhHHhhcc-
Confidence 6799999999998 887 889999999999999999999999999999 6662222122222 333 5688888874
Q ss_pred CCCCCcEEEEEcCCcccCCCCCCCCeEEeccc
Q 002970 240 GTCHPKMALVIDDRLKVWDDKDQPRVHVVPAF 271 (862)
Q Consensus 240 ~~~~~~~vVIIDDR~dVW~~~~~~~v~vV~~Y 271 (862)
+-.-++|||++.--|..+.++.| +++.+
T Consensus 320 ---~l~~viiId~~p~SY~~~p~~~i-~i~~W 347 (390)
T COG5190 320 ---SLDKVIIIDNSPASYEFHPENAI-PIEKW 347 (390)
T ss_pred ---CCCceEEeeCChhhhhhCcccee-ccCcc
Confidence 56789999999999988865444 67665
No 52
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=97.49 E-value=0.00023 Score=75.81 Aligned_cols=80 Identities=14% Similarity=0.227 Sum_probs=56.3
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-Cccc----hhhhccC
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRKS----LFNVFQD 239 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~-~~Ks----L~~lfp~ 239 (862)
+++.||+.+++..|+ ..-|-+.|.|++.+.++..+++.+ +...+|+.|++.++. ..|. +..+...
T Consensus 108 ~~l~pg~~e~L~~L~---~~g~~l~I~Tn~~~~~~~~~l~~~-------gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~ 177 (260)
T PLN03243 108 YRLRPGSREFVQALK---KHEIPIAVASTRPRRYLERAIEAV-------GMEGFFSVVLAAEDVYRGKPDPEMFMYAAER 177 (260)
T ss_pred cccCCCHHHHHHHHH---HCCCEEEEEeCcCHHHHHHHHHHc-------CCHhhCcEEEecccCCCCCCCHHHHHHHHHH
Confidence 577899999888886 567999999999999999999984 444566788887543 1111 1111111
Q ss_pred CCCCCcEEEEEcCCc
Q 002970 240 GTCHPKMALVIDDRL 254 (862)
Q Consensus 240 ~~~~~~~vVIIDDR~ 254 (862)
....++-+|+|+|+.
T Consensus 178 l~~~p~~~l~IgDs~ 192 (260)
T PLN03243 178 LGFIPERCIVFGNSN 192 (260)
T ss_pred hCCChHHeEEEcCCH
Confidence 125677899999984
No 53
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=97.47 E-value=0.00064 Score=67.15 Aligned_cols=77 Identities=19% Similarity=0.301 Sum_probs=51.4
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-C----ccc----hhh
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-S----RKS----LFN 235 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~-~----~Ks----L~~ 235 (862)
+++.|++.+ +|+ +.. |.++|+|++.+.++..+++.+ +...+|+.|+|.++. . .|- +..
T Consensus 83 ~~~~~g~~~---~L~-~L~--~~~~i~Tn~~~~~~~~~l~~~-------gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~ 149 (184)
T TIGR01993 83 LKPDPELRN---LLL-RLP--GRKIIFTNGDRAHARRALNRL-------GIEDCFDGIFCFDTANPDYLLPKPSPQAYEK 149 (184)
T ss_pred CCCCHHHHH---HHH-hCC--CCEEEEeCCCHHHHHHHHHHc-------CcHhhhCeEEEeecccCccCCCCCCHHHHHH
Confidence 567789988 554 333 679999999999999999884 334456688887542 2 132 233
Q ss_pred hccCCCCCCcEEEEEcCCc
Q 002970 236 VFQDGTCHPKMALVIDDRL 254 (862)
Q Consensus 236 lfp~~~~~~~~vVIIDDR~ 254 (862)
++......++-+++|||+.
T Consensus 150 ~~~~~~~~~~~~l~vgD~~ 168 (184)
T TIGR01993 150 ALREAGVDPERAIFFDDSA 168 (184)
T ss_pred HHHHhCCCccceEEEeCCH
Confidence 3222225677789999985
No 54
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=97.47 E-value=0.00061 Score=68.86 Aligned_cols=80 Identities=15% Similarity=0.194 Sum_probs=57.5
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-----CccchhhhccC
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-----SRKSLFNVFQD 239 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~-----~~KsL~~lfp~ 239 (862)
+++.||+.+++.+|+ ++.+.+.|.|++.+.++..+++.+ +...+|+.|++.++. ....+.++...
T Consensus 81 ~~~~~g~~~~l~~L~---~~g~~~~i~S~~~~~~~~~~l~~~-------gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~ 150 (214)
T PRK13288 81 VTEYETVYETLKTLK---KQGYKLGIVTTKMRDTVEMGLKLT-------GLDEFFDVVITLDDVEHAKPDPEPVLKALEL 150 (214)
T ss_pred cccCcCHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHc-------CChhceeEEEecCcCCCCCCCcHHHHHHHHH
Confidence 567899999888886 456899999999999999999884 445566788886542 11223333332
Q ss_pred CCCCCcEEEEEcCCc
Q 002970 240 GTCHPKMALVIDDRL 254 (862)
Q Consensus 240 ~~~~~~~vVIIDDR~ 254 (862)
....++-+++|+|+.
T Consensus 151 ~~~~~~~~~~iGDs~ 165 (214)
T PRK13288 151 LGAKPEEALMVGDNH 165 (214)
T ss_pred cCCCHHHEEEECCCH
Confidence 224567788999985
No 55
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=97.46 E-value=0.0005 Score=65.61 Aligned_cols=75 Identities=13% Similarity=0.069 Sum_probs=51.0
Q ss_pred eCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCCCcc----chhhhccCCCC
Q 002970 167 LRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRK----SLFNVFQDGTC 242 (862)
Q Consensus 167 LRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~~~K----sL~~lfp~~~~ 242 (862)
..||+.+++.+|+ ++-+.++|.|++.+.++..+++.+ -..+| +.|++.++...| .+..++....+
T Consensus 65 ~~~g~~e~l~~L~---~~g~~~~i~T~~~~~~~~~~~~~~--l~~~f------~~i~~~~~~~~Kp~~~~~~~~~~~~~~ 133 (154)
T TIGR01549 65 YIRGAADLLKRLK---EAGIKLGIISNGSLRAQKLLLRKH--LGDYF------DLILGSDEFGAKPEPEIFLAALESLGL 133 (154)
T ss_pred eccCHHHHHHHHH---HCcCeEEEEeCCchHHHHHHHHHH--HHhcC------cEEEecCCCCCCcCHHHHHHHHHHcCC
Confidence 3489999888886 456899999999999999999984 22334 578887532122 23333322224
Q ss_pred CCcEEEEEcCC
Q 002970 243 HPKMALVIDDR 253 (862)
Q Consensus 243 ~~~~vVIIDDR 253 (862)
.+ -+|+|+|+
T Consensus 134 ~~-~~l~iGDs 143 (154)
T TIGR01549 134 PP-EVLHVGDN 143 (154)
T ss_pred CC-CEEEEeCC
Confidence 55 68888887
No 56
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=97.41 E-value=0.00087 Score=66.17 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=38.3
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccc
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLIN 214 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg 214 (862)
++++||+.+++.+|+ ++-+.++|.|+|.+.++..+++.+.-+ .+|.
T Consensus 79 ~~~~~g~~e~l~~l~---~~g~~~~IvS~~~~~~~~~~l~~~g~~-~~~~ 124 (201)
T TIGR01491 79 ISLRDYAEELVRWLK---EKGLKTAIVSGGIMCLAKKVAEKLNPD-YVYS 124 (201)
T ss_pred CCCCccHHHHHHHHH---HCCCEEEEEeCCcHHHHHHHHHHhCCC-eEEE
Confidence 468899999888886 567999999999999999999987643 3455
No 57
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=97.40 E-value=0.00076 Score=72.44 Aligned_cols=80 Identities=14% Similarity=0.192 Sum_probs=54.7
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC--CccchhhhccCCCC
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG--SRKSLFNVFQDGTC 242 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~--~~KsL~~lfp~~~~ 242 (862)
+++-||+.+++.+|+ .+.+.+.|.|++.+.++..+++.++ ..++|+.|++.+.. ....+..+......
T Consensus 141 ~~l~pg~~e~L~~L~---~~gi~laIvSn~~~~~~~~~L~~~g-------l~~~F~~vi~~~~~~~k~~~~~~~l~~~~~ 210 (273)
T PRK13225 141 LQLFPGVADLLAQLR---SRSLCLGILSSNSRQNIEAFLQRQG-------LRSLFSVVQAGTPILSKRRALSQLVAREGW 210 (273)
T ss_pred CCcCCCHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHcC-------ChhheEEEEecCCCCCCHHHHHHHHHHhCc
Confidence 466799999888887 5678999999999999999998854 33445567765442 11222222221113
Q ss_pred CCcEEEEEcCCc
Q 002970 243 HPKMALVIDDRL 254 (862)
Q Consensus 243 ~~~~vVIIDDR~ 254 (862)
.++-+|+|+|+.
T Consensus 211 ~p~~~l~IGDs~ 222 (273)
T PRK13225 211 QPAAVMYVGDET 222 (273)
T ss_pred ChhHEEEECCCH
Confidence 567789999984
No 58
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=97.39 E-value=0.00074 Score=69.90 Aligned_cols=80 Identities=18% Similarity=0.074 Sum_probs=56.2
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccC-CCccc----hhhhccC
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRKS----LFNVFQD 239 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres-~~~Ks----L~~lfp~ 239 (862)
+++.||+.+++..|+ ++-|-++|.|++.+.++..+++. ++...+|+.|+|.++ +..|- +..+...
T Consensus 92 ~~~~~g~~e~L~~Lk---~~g~~~~i~Tn~~~~~~~~~l~~-------~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~ 161 (224)
T PRK14988 92 AVLREDTVPFLEALK---ASGKRRILLTNAHPHNLAVKLEH-------TGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEH 161 (224)
T ss_pred CCcCCCHHHHHHHHH---hCCCeEEEEeCcCHHHHHHHHHH-------CCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHH
Confidence 577899999888887 55788999999999999998877 344455667877643 22222 2222221
Q ss_pred CCCCCcEEEEEcCCc
Q 002970 240 GTCHPKMALVIDDRL 254 (862)
Q Consensus 240 ~~~~~~~vVIIDDR~ 254 (862)
....++-+|+|||+.
T Consensus 162 ~~~~p~~~l~igDs~ 176 (224)
T PRK14988 162 TGLKAERTLFIDDSE 176 (224)
T ss_pred cCCChHHEEEEcCCH
Confidence 125677899999985
No 59
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=97.38 E-value=0.00076 Score=76.16 Aligned_cols=81 Identities=15% Similarity=0.158 Sum_probs=59.0
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-Cccc----hhhhccC
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRKS----LFNVFQD 239 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~-~~Ks----L~~lfp~ 239 (862)
+.+.||+.+++.+|+ ..-+.+.|.|++.+.|+..+++. ++...+|+.|++.++. ..|- +......
T Consensus 215 ~~l~pGa~ElL~~Lk---~~GiklaIaSn~~~~~~~~~L~~-------lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~ 284 (381)
T PLN02575 215 YRLRTGSQEFVNVLM---NYKIPMALVSTRPRKTLENAIGS-------IGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQL 284 (381)
T ss_pred CCcCcCHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHH-------cCCHHHceEEEecCcCCCCCCCHHHHHHHHHH
Confidence 456799999888887 56799999999999999999998 5666677899998653 1111 1222211
Q ss_pred CCCCCcEEEEEcCCcc
Q 002970 240 GTCHPKMALVIDDRLK 255 (862)
Q Consensus 240 ~~~~~~~vVIIDDR~d 255 (862)
....++-+|+|+|+..
T Consensus 285 lgl~Peecl~IGDS~~ 300 (381)
T PLN02575 285 LNFIPERCIVFGNSNQ 300 (381)
T ss_pred cCCCcccEEEEcCCHH
Confidence 1256778999999753
No 60
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=97.37 E-value=0.00043 Score=73.78 Aligned_cols=80 Identities=15% Similarity=0.228 Sum_probs=55.6
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-Ccc----chhhhccC
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQD 239 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~-~~K----sL~~lfp~ 239 (862)
+++.|++.++++.|+ .+-+.+.|+|++.+.++..+++.++ ...+|+.|+|.++. ..| .+..++..
T Consensus 100 ~~~~~g~~e~L~~Lk---~~g~~l~ivTn~~~~~~~~~l~~~~-------i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~ 169 (272)
T PRK13223 100 TVVYPGVRDTLKWLK---KQGVEMALITNKPERFVAPLLDQMK-------IGRYFRWIIGGDTLPQKKPDPAALLFVMKM 169 (272)
T ss_pred CccCCCHHHHHHHHH---HCCCeEEEEECCcHHHHHHHHHHcC-------cHhhCeEEEecCCCCCCCCCcHHHHHHHHH
Confidence 577899999888886 4568999999999999998888743 23445678886532 111 23333332
Q ss_pred CCCCCcEEEEEcCCc
Q 002970 240 GTCHPKMALVIDDRL 254 (862)
Q Consensus 240 ~~~~~~~vVIIDDR~ 254 (862)
....++-+|+|+|+.
T Consensus 170 ~g~~~~~~l~IGD~~ 184 (272)
T PRK13223 170 AGVPPSQSLFVGDSR 184 (272)
T ss_pred hCCChhHEEEECCCH
Confidence 225677899999984
No 61
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=97.37 E-value=0.00069 Score=67.97 Aligned_cols=79 Identities=23% Similarity=0.288 Sum_probs=55.2
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccC-CCcc----chhhhccC
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRK----SLFNVFQD 239 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres-~~~K----sL~~lfp~ 239 (862)
++++|++.+++..|+ +. |.+.|.||+.+.++..+++- ++...+|+.|++.++ +..| -+..++..
T Consensus 96 ~~~~~g~~~~L~~l~---~~-~~~~i~Sn~~~~~~~~~l~~-------~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~ 164 (224)
T TIGR02254 96 HQLLPGAFELMENLQ---QK-FRLYIVTNGVRETQYKRLRK-------SGLFPFFDDIFVSEDAGIQKPDKEIFNYALER 164 (224)
T ss_pred CeeCccHHHHHHHHH---hc-CcEEEEeCCchHHHHHHHHH-------CCcHhhcCEEEEcCccCCCCCCHHHHHHHHHH
Confidence 678999999777775 34 99999999999999998877 455556778888643 2111 12222221
Q ss_pred C-CCCCcEEEEEcCCc
Q 002970 240 G-TCHPKMALVIDDRL 254 (862)
Q Consensus 240 ~-~~~~~~vVIIDDR~ 254 (862)
. ...++-+|+|+|+.
T Consensus 165 ~~~~~~~~~v~igD~~ 180 (224)
T TIGR02254 165 MPKFSKEEVLMIGDSL 180 (224)
T ss_pred hcCCCchheEEECCCc
Confidence 1 25678899999984
No 62
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=97.33 E-value=0.00087 Score=67.75 Aligned_cols=46 Identities=20% Similarity=0.149 Sum_probs=36.8
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccc
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLIN 214 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg 214 (862)
++++||+.+++..|+ .+-+.++|.|+|.+.++..+++.+.=.. +|+
T Consensus 84 ~~~~~g~~~~l~~l~---~~g~~~~IvS~~~~~~~~~~l~~~~i~~-~~~ 129 (219)
T TIGR00338 84 LPLTEGAEELVKTLK---EKGYKVAVISGGFDLFAEHVKDKLGLDA-AFA 129 (219)
T ss_pred CCcCCCHHHHHHHHH---HCCCEEEEECCCcHHHHHHHHHHcCCCc-eEe
Confidence 468899999777776 4569999999999999999999865332 554
No 63
>PLN02954 phosphoserine phosphatase
Probab=97.32 E-value=0.0013 Score=66.81 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=38.1
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCC-Cccc
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPES-NLIN 214 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g-~lFg 214 (862)
.+++||+.+++.+|+ ..-+.++|.|.|.+.++..+++.+.=+. .+|.
T Consensus 83 ~~l~pg~~e~l~~l~---~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~ 130 (224)
T PLN02954 83 PRLSPGIPELVKKLR---ARGTDVYLVSGGFRQMIAPVAAILGIPPENIFA 130 (224)
T ss_pred CCCCccHHHHHHHHH---HCCCEEEEECCCcHHHHHHHHHHhCCChhhEEE
Confidence 457899999999987 4678999999999999999999865332 3554
No 64
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=97.30 E-value=0.00017 Score=71.95 Aligned_cols=80 Identities=8% Similarity=0.085 Sum_probs=53.6
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccC-CCccc----hhhhccC
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRKS----LFNVFQD 239 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres-~~~Ks----L~~lfp~ 239 (862)
+++.|++.++++.|+ .+-|.++|.||+.+.++..+++.+ |...+|+.|++.++ +..|- +..++..
T Consensus 91 ~~~~~~~~~~L~~L~---~~g~~~~i~Sn~~~~~~~~~l~~~-------gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~ 160 (198)
T TIGR01428 91 LPPHPDVPAGLRALK---ERGYRLAILSNGSPAMLKSLVKHA-------GLDDPFDAVLSADAVRAYKPAPQVYQLALEA 160 (198)
T ss_pred CCCCCCHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHC-------CChhhhheeEehhhcCCCCCCHHHHHHHHHH
Confidence 356799999666665 345999999999999999998874 33455678887643 22221 2222211
Q ss_pred CCCCCcEEEEEcCCc
Q 002970 240 GTCHPKMALVIDDRL 254 (862)
Q Consensus 240 ~~~~~~~vVIIDDR~ 254 (862)
....++-+++|+|+.
T Consensus 161 ~~~~p~~~~~vgD~~ 175 (198)
T TIGR01428 161 LGVPPDEVLFVASNP 175 (198)
T ss_pred hCCChhhEEEEeCCH
Confidence 124677889999985
No 65
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=97.28 E-value=0.0011 Score=67.41 Aligned_cols=85 Identities=7% Similarity=0.120 Sum_probs=61.6
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-----CccchhhhccC
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-----SRKSLFNVFQD 239 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~-----~~KsL~~lfp~ 239 (862)
+++.||+.+++.+|+ ++-|.++|.|++.+.++..+++. ++...+|+.|+|.+.. +...+..++..
T Consensus 91 ~~~~~g~~~~l~~l~---~~g~~~~i~S~~~~~~~~~~l~~-------~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~ 160 (222)
T PRK10826 91 RPLLPGVREALALCK---AQGLKIGLASASPLHMLEAVLTM-------FDLRDYFDALASAEKLPYSKPHPEVYLNCAAK 160 (222)
T ss_pred CCCCCCHHHHHHHHH---HCCCeEEEEeCCcHHHHHHHHHh-------CcchhcccEEEEcccCCCCCCCHHHHHHHHHH
Confidence 467799999888886 56799999999999999999998 4455667788887542 22234444433
Q ss_pred CCCCCcEEEEEcCCcccCCC
Q 002970 240 GTCHPKMALVIDDRLKVWDD 259 (862)
Q Consensus 240 ~~~~~~~vVIIDDR~dVW~~ 259 (862)
....++-+|+|+|+..=...
T Consensus 161 ~~~~~~~~~~igDs~~Di~a 180 (222)
T PRK10826 161 LGVDPLTCVALEDSFNGMIA 180 (222)
T ss_pred cCCCHHHeEEEcCChhhHHH
Confidence 33567789999999754433
No 66
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=97.26 E-value=0.0019 Score=65.09 Aligned_cols=80 Identities=16% Similarity=0.202 Sum_probs=55.3
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-Ccc----chhhhccC
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQD 239 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~-~~K----sL~~lfp~ 239 (862)
++++||+.+++..|+ ...+.+.|+|++.+.++..+++.++= ..+++.+++.++. ..| .+..++..
T Consensus 92 ~~~~~g~~~~l~~l~---~~g~~~~i~S~~~~~~~~~~l~~~~l-------~~~f~~~~~~~~~~~~kp~~~~~~~~~~~ 161 (226)
T PRK13222 92 SRLYPGVKETLAALK---AAGYPLAVVTNKPTPFVAPLLEALGI-------ADYFSVVIGGDSLPNKKPDPAPLLLACEK 161 (226)
T ss_pred CccCCCHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHcCC-------ccCccEEEcCCCCCCCCcChHHHHHHHHH
Confidence 678899999777776 45799999999999999999988642 2344577776432 112 12333222
Q ss_pred CCCCCcEEEEEcCCc
Q 002970 240 GTCHPKMALVIDDRL 254 (862)
Q Consensus 240 ~~~~~~~vVIIDDR~ 254 (862)
....++-+++|+|+.
T Consensus 162 ~~~~~~~~i~igD~~ 176 (226)
T PRK13222 162 LGLDPEEMLFVGDSR 176 (226)
T ss_pred cCCChhheEEECCCH
Confidence 225667899999984
No 67
>PRK11587 putative phosphatase; Provisional
Probab=97.25 E-value=0.00092 Score=68.17 Aligned_cols=79 Identities=13% Similarity=0.009 Sum_probs=51.5
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-----CccchhhhccC
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-----SRKSLFNVFQD 239 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~-----~~KsL~~lfp~ 239 (862)
+++.||+.+++.+|+ .+.|.+.|.|++.+.++..+.+.+.= .+| .-|+|.++. +...+......
T Consensus 82 ~~~~pg~~e~L~~L~---~~g~~~~ivTn~~~~~~~~~l~~~~l--~~~------~~i~~~~~~~~~KP~p~~~~~~~~~ 150 (218)
T PRK11587 82 ITALPGAIALLNHLN---KLGIPWAIVTSGSVPVASARHKAAGL--PAP------EVFVTAERVKRGKPEPDAYLLGAQL 150 (218)
T ss_pred ceeCcCHHHHHHHHH---HcCCcEEEEcCCCchHHHHHHHhcCC--CCc------cEEEEHHHhcCCCCCcHHHHHHHHH
Confidence 578899999888886 56799999999999988777665321 122 457776431 11112222221
Q ss_pred CCCCCcEEEEEcCCc
Q 002970 240 GTCHPKMALVIDDRL 254 (862)
Q Consensus 240 ~~~~~~~vVIIDDR~ 254 (862)
.+..++-+|+|+|+.
T Consensus 151 ~g~~p~~~l~igDs~ 165 (218)
T PRK11587 151 LGLAPQECVVVEDAP 165 (218)
T ss_pred cCCCcccEEEEecch
Confidence 225677889999985
No 68
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=97.25 E-value=0.00053 Score=61.38 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=32.6
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhC
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLD 207 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLD 207 (862)
.+++|++.++++.|+ ..-+.++|+|++.+.++..+++.+.
T Consensus 23 ~~~~~~~~~~l~~l~---~~g~~i~ivS~~~~~~~~~~~~~~~ 62 (139)
T cd01427 23 LELYPGVKEALKELK---EKGIKLALATNKSRREVLELLEELG 62 (139)
T ss_pred CCcCcCHHHHHHHHH---HCCCeEEEEeCchHHHHHHHHHHcC
Confidence 567789999666665 3458999999999999999998853
No 69
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=97.22 E-value=0.0013 Score=65.64 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=51.6
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccC-CCccc----hhhhccC
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRKS----LFNVFQD 239 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres-~~~Ks----L~~lfp~ 239 (862)
+++-|++.+++.+|+ .+.|.+.|+||+.+.+ ..+++. ++...+|+.|++.++ +..|- +..++..
T Consensus 104 ~~~~~g~~~~l~~L~---~~g~~~~i~Sn~~~~~-~~~l~~-------~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~ 172 (203)
T TIGR02252 104 WQVYPDAIKLLKDLR---ERGLILGVISNFDSRL-RGLLEA-------LGLLEYFDFVVTSYEVGAEKPDPKIFQEALER 172 (203)
T ss_pred ceeCcCHHHHHHHHH---HCCCEEEEEeCCchhH-HHHHHH-------CCcHHhcceEEeecccCCCCCCHHHHHHHHHH
Confidence 477899999888886 4568999999998865 555554 344456677877533 32221 2323222
Q ss_pred CCCCCcEEEEEcCCc
Q 002970 240 GTCHPKMALVIDDRL 254 (862)
Q Consensus 240 ~~~~~~~vVIIDDR~ 254 (862)
.++.++-+|+|+|+.
T Consensus 173 ~~~~~~~~~~IgD~~ 187 (203)
T TIGR02252 173 AGISPEEALHIGDSL 187 (203)
T ss_pred cCCChhHEEEECCCc
Confidence 235678899999984
No 70
>PLN02940 riboflavin kinase
Probab=97.20 E-value=0.00028 Score=79.08 Aligned_cols=80 Identities=19% Similarity=0.148 Sum_probs=56.7
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHH-hhCCCCCccccccccCeEEeccCC-Ccc----chhhhcc
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWR-LLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQ 238 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~r-lLDP~g~lFg~~~l~~RIisres~-~~K----sL~~lfp 238 (862)
+++.||+.+++++|+ +.-+.+.|.|++.+.++..+++ . ++..++|+.|+|.++. ..| -+..++.
T Consensus 92 ~~l~pGv~elL~~Lk---~~g~~l~IvTn~~~~~~~~~l~~~-------~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~ 161 (382)
T PLN02940 92 IKALPGANRLIKHLK---SHGVPMALASNSPRANIEAKISCH-------QGWKESFSVIVGGDEVEKGKPSPDIFLEAAK 161 (382)
T ss_pred CCCCcCHHHHHHHHH---HCCCcEEEEeCCcHHHHHHHHHhc-------cChHhhCCEEEehhhcCCCCCCHHHHHHHHH
Confidence 467799999888887 5679999999999999988775 4 4445566789887653 222 2333332
Q ss_pred CCCCCCcEEEEEcCCc
Q 002970 239 DGTCHPKMALVIDDRL 254 (862)
Q Consensus 239 ~~~~~~~~vVIIDDR~ 254 (862)
.....++-+|+|+|+.
T Consensus 162 ~lgv~p~~~l~VGDs~ 177 (382)
T PLN02940 162 RLNVEPSNCLVIEDSL 177 (382)
T ss_pred HcCCChhHEEEEeCCH
Confidence 2224567799999986
No 71
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=97.16 E-value=0.0028 Score=66.01 Aligned_cols=87 Identities=9% Similarity=0.021 Sum_probs=57.0
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-Ccc----chhhhccC
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQD 239 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~-~~K----sL~~lfp~ 239 (862)
+++.||+.+++.+|+ .+-+.+.|.|++.+.++..+++.+.=.+ +| ++.|+|.++. ..| .+...+..
T Consensus 98 ~~~~pg~~e~L~~L~---~~g~~l~IvT~~~~~~~~~~l~~~gl~~-~f-----~d~ii~~~~~~~~KP~p~~~~~a~~~ 168 (253)
T TIGR01422 98 SSPIPGVIEVIAYLR---ARGIKIGSTTGYTREMMDVVAPEAALQG-YR-----PDYNVTTDDVPAGRPAPWMALKNAIE 168 (253)
T ss_pred CccCCCHHHHHHHHH---HCCCeEEEECCCcHHHHHHHHHHHHhcC-CC-----CceEEccccCCCCCCCHHHHHHHHHH
Confidence 567899999888887 4569999999999999999998854322 22 2688887542 111 22222221
Q ss_pred CCC-CCcEEEEEcCCc-ccCCCC
Q 002970 240 GTC-HPKMALVIDDRL-KVWDDK 260 (862)
Q Consensus 240 ~~~-~~~~vVIIDDR~-dVW~~~ 260 (862)
..+ +++-+|+|+|+. |+-..+
T Consensus 169 l~~~~~~~~l~IGDs~~Di~aA~ 191 (253)
T TIGR01422 169 LGVYDVAACVKVGDTVPDIEEGR 191 (253)
T ss_pred cCCCCchheEEECCcHHHHHHHH
Confidence 113 366788899984 344333
No 72
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.00028 Score=76.80 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=62.5
Q ss_pred CCCCchHHHHHHHHhcCC-CeEEEEeeecC---CCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 002970 608 STETPSGVLQDIAMKCGT-KVEFRPALVAS---TELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLAN 677 (862)
Q Consensus 608 ~~~n~KS~LQE~~QK~~~-~l~Y~~v~~~~---Hdk~Ftv~V~i~G~~~G~G~GkSKKeAEq~AA~~AL~~L~~ 677 (862)
...+|...|-++|++.+. +++|+++.+.+ -.+.|.|.++-|.+.+|+|.|.|-|.||+.||.+||.++=.
T Consensus 230 ql~~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kkllGqG~Gesl~~A~e~AA~dAL~k~y~ 303 (333)
T KOG3769|consen 230 QLQWPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQGQGESLKLAEEQAARDALIKLYD 303 (333)
T ss_pred cccchHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCchhhccCcchHHHHHHHHHHHHHHHHHHc
Confidence 456789999999999995 69999987754 47999999999999999999999999999999999998843
No 73
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=97.15 E-value=0.0031 Score=61.21 Aligned_cols=46 Identities=17% Similarity=0.261 Sum_probs=36.4
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccc
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLIN 214 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg 214 (862)
++++|++.+++..|+ +.-+.++|.|.|.+.|+..+++.+.=+ .+|+
T Consensus 72 ~~~~~g~~~~l~~l~---~~g~~~~ivS~~~~~~i~~~~~~~g~~-~~~~ 117 (177)
T TIGR01488 72 VALRPGARELISWLK---ERGIDTVIVSGGFDFFVEPVAEKLGID-DVFA 117 (177)
T ss_pred CCcCcCHHHHHHHHH---HCCCEEEEECCCcHHHHHHHHHHcCCc-hhee
Confidence 446899999888876 456899999999999999999986433 3444
No 74
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=97.12 E-value=0.0022 Score=66.18 Aligned_cols=81 Identities=14% Similarity=-0.001 Sum_probs=55.7
Q ss_pred EEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-Ccc----chhhhcc
Q 002970 164 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQ 238 (862)
Q Consensus 164 ~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~-~~K----sL~~lfp 238 (862)
.+++.||+.++++.|+ +.-+-+.|.|++.+.++..+++.+ +...+|+.|++.++. ..| -+..+..
T Consensus 93 ~~~~~pg~~~~L~~L~---~~g~~l~i~Tn~~~~~~~~~l~~~-------~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~ 162 (229)
T PRK13226 93 QSQLFDGVEGMLQRLE---CAGCVWGIVTNKPEYLARLILPQL-------GWEQRCAVLIGGDTLAERKPHPLPLLVAAE 162 (229)
T ss_pred cCeeCCCHHHHHHHHH---HCCCeEEEECCCCHHHHHHHHHHc-------CchhcccEEEecCcCCCCCCCHHHHHHHHH
Confidence 3678899999888886 456899999999999999888874 333445677776432 111 1233322
Q ss_pred CCCCCCcEEEEEcCCc
Q 002970 239 DGTCHPKMALVIDDRL 254 (862)
Q Consensus 239 ~~~~~~~~vVIIDDR~ 254 (862)
.....++-+++|+|+.
T Consensus 163 ~l~~~p~~~l~IGDs~ 178 (229)
T PRK13226 163 RIGVAPTDCVYVGDDE 178 (229)
T ss_pred HhCCChhhEEEeCCCH
Confidence 2225678899999985
No 75
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=97.12 E-value=0.00071 Score=76.59 Aligned_cols=83 Identities=23% Similarity=0.303 Sum_probs=62.1
Q ss_pred CCchHHHHHHhhhcCCC------ceeeecCCCCCCCCCCccEEEEEEECCEEEeeeecCCHHHHHHHHHHHHHHHhhccc
Q 002970 742 MGSVSALKELCMTEGLG------VVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRSMF 815 (862)
Q Consensus 742 ~N~V~lLnELcqkeGL~------~~f~~e~v~~sGp~H~keF~aqV~IdGkvyG~GtGsSKKeAKqqAAe~AL~aL~~~~ 815 (862)
.+|+.-|+.-|-..... .+++-. ....||.+++.|+..|.++|+++|.|+|+|-|.|...||+.||+.+..
T Consensus 427 ndpkskLqq~cl~~rys~~~epdip~y~V-~~~~gpa~~r~y~Vavyf~gkrlat~~G~nik~Ae~rAA~~ALe~~~~-- 503 (533)
T KOG1817|consen 427 NDPKSKLQQCCLTLRYSLGGEPDIPLYKV-LGAKGPANDRNYKVAVYFKGKRLATGVGSNIKQAEMRAAMQALENLKM-- 503 (533)
T ss_pred cCcHHHHHHHHHHHhcccCCCCCCceEEE-ecccCCCCCCceEEEEEECCEEEeeccCchHhHHHHHHHHHHHHHHHh--
Confidence 37888998877433222 334443 334788899999999999999999999999999999999999999975
Q ss_pred CCCCCccCCCCC
Q 002970 816 GQFPQKHQGSPR 827 (862)
Q Consensus 816 ~~~~pkrq~spr 827 (862)
+-..-+||..|+
T Consensus 504 dF~k~~r~~~~~ 515 (533)
T KOG1817|consen 504 DFSKMARQKRPI 515 (533)
T ss_pred hhHHHHHhcchH
Confidence 322333444444
No 76
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=97.11 E-value=0.0051 Score=63.40 Aligned_cols=86 Identities=17% Similarity=0.218 Sum_probs=57.6
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccC-CCc----cchhhhccC
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSR----KSLFNVFQD 239 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres-~~~----KsL~~lfp~ 239 (862)
.++-|++.+++.-|+ ++-|.+.|+|+..+..+..+++. |+...+|.-|+|-++ ... ..|..++..
T Consensus 88 ~~~~~gv~e~L~~L~---~~g~~l~i~T~k~~~~~~~~l~~-------~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~ 157 (220)
T COG0546 88 SRLFPGVKELLAALK---SAGYKLGIVTNKPERELDILLKA-------LGLADYFDVIVGGDDVPPPKPDPEPLLLLLEK 157 (220)
T ss_pred CccCCCHHHHHHHHH---hCCCeEEEEeCCcHHHHHHHHHH-------hCCccccceEEcCCCCCCCCcCHHHHHHHHHH
Confidence 456699999888887 66799999999999999999998 666677778888322 222 334444432
Q ss_pred CCCCCcEEEEEcCC-cccCCCC
Q 002970 240 GTCHPKMALVIDDR-LKVWDDK 260 (862)
Q Consensus 240 ~~~~~~~vVIIDDR-~dVW~~~ 260 (862)
....++-+|+|.|+ .|+=..+
T Consensus 158 ~~~~~~~~l~VGDs~~Di~aA~ 179 (220)
T COG0546 158 LGLDPEEALMVGDSLNDILAAK 179 (220)
T ss_pred hCCChhheEEECCCHHHHHHHH
Confidence 22334355555555 4554444
No 77
>PRK09449 dUMP phosphatase; Provisional
Probab=97.08 E-value=0.0024 Score=64.85 Aligned_cols=84 Identities=13% Similarity=0.131 Sum_probs=56.2
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccC-CCcc----chhhhccC
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRK----SLFNVFQD 239 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres-~~~K----sL~~lfp~ 239 (862)
+++.||+.+++..|+ +.|-+.|.||+.+.++..+++. ++...+|+.|++.++ +..| -+..++..
T Consensus 94 ~~~~~g~~~~L~~L~----~~~~~~i~Tn~~~~~~~~~l~~-------~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~ 162 (224)
T PRK09449 94 CTPLPGAVELLNALR----GKVKMGIITNGFTELQQVRLER-------TGLRDYFDLLVISEQVGVAKPDVAIFDYALEQ 162 (224)
T ss_pred CccCccHHHHHHHHH----hCCeEEEEeCCcHHHHHHHHHh-------CChHHHcCEEEEECccCCCCCCHHHHHHHHHH
Confidence 567899999777774 3499999999999999998877 455556778887744 2222 12222222
Q ss_pred CCC-CCcEEEEEcCCc--ccCCC
Q 002970 240 GTC-HPKMALVIDDRL--KVWDD 259 (862)
Q Consensus 240 ~~~-~~~~vVIIDDR~--dVW~~ 259 (862)
..+ .++-+++|+|+. ||=..
T Consensus 163 ~~~~~~~~~~~vgD~~~~Di~~A 185 (224)
T PRK09449 163 MGNPDRSRVLMVGDNLHSDILGG 185 (224)
T ss_pred cCCCCcccEEEEcCCcHHHHHHH
Confidence 113 336799999984 66433
No 78
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=96.99 E-value=0.0022 Score=63.13 Aligned_cols=77 Identities=17% Similarity=0.157 Sum_probs=52.1
Q ss_pred eeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-Cccc----hhhhccCC
Q 002970 166 RLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRKS----LFNVFQDG 240 (862)
Q Consensus 166 KLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~-~~Ks----L~~lfp~~ 240 (862)
++-|++ +++..|. +.+.+.|.|++.+.++..+++. ++...+|+.|+|.++. ..|. +..++..-
T Consensus 88 ~~~~~~-e~L~~L~----~~~~l~I~T~~~~~~~~~~l~~-------~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~ 155 (188)
T PRK10725 88 EPLPLI-EVVKAWH----GRRPMAVGTGSESAIAEALLAH-------LGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLM 155 (188)
T ss_pred CCccHH-HHHHHHH----hCCCEEEEcCCchHHHHHHHHh-------CCcHhHceEEEehhhccCCCCChHHHHHHHHHc
Confidence 445764 6555554 3479999999999999999998 5555666789998643 2222 34433322
Q ss_pred CCCCcEEEEEcCCc
Q 002970 241 TCHPKMALVIDDRL 254 (862)
Q Consensus 241 ~~~~~~vVIIDDR~ 254 (862)
.+.++-+|+|||+.
T Consensus 156 ~~~~~~~l~igDs~ 169 (188)
T PRK10725 156 GVQPTQCVVFEDAD 169 (188)
T ss_pred CCCHHHeEEEeccH
Confidence 35677788999984
No 79
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=96.99 E-value=0.0029 Score=61.80 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=50.3
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccC-CCcc----chhhhccC
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRK----SLFNVFQD 239 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres-~~~K----sL~~lfp~ 239 (862)
+++.||+.++++.|+ +..+.++|.|++.. +..+++. ++...+|+.+++.++ +..| .+..++..
T Consensus 86 ~~~~pg~~~~L~~L~---~~g~~~~i~s~~~~--~~~~l~~-------~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~ 153 (185)
T TIGR01990 86 ADVLPGIKNLLDDLK---KNNIKIALASASKN--APTVLEK-------LGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEG 153 (185)
T ss_pred cccCccHHHHHHHHH---HCCCeEEEEeCCcc--HHHHHHh-------cCcHhhCcEEEehhhcCCCCCChHHHHHHHHH
Confidence 467799999888886 45799999998753 5556555 344566778887643 2112 22222222
Q ss_pred CCCCCcEEEEEcCCc
Q 002970 240 GTCHPKMALVIDDRL 254 (862)
Q Consensus 240 ~~~~~~~vVIIDDR~ 254 (862)
....++-+|+|+|+.
T Consensus 154 ~~~~~~~~v~vgD~~ 168 (185)
T TIGR01990 154 LGVSPSECIGIEDAQ 168 (185)
T ss_pred cCCCHHHeEEEecCH
Confidence 225667899999984
No 80
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=96.88 E-value=0.00082 Score=76.87 Aligned_cols=69 Identities=23% Similarity=0.157 Sum_probs=51.6
Q ss_pred CCCCchHHHHHHhhhcCCCceeeecCCCCCCCCCCccEEEEEEECCEEEeeeecCCHHHHHHHHHHHHHHHh
Q 002970 740 KLMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSL 811 (862)
Q Consensus 740 ~~~N~V~lLnELcqkeGL~~~f~~e~v~~sGp~H~keF~aqV~IdGkvyG~GtGsSKKeAKqqAAe~AL~aL 811 (862)
..+..|..|.||+|.---..+.|+- .....++ --|.+.|.||+..||.|+|.|||.||..||+.+|..|
T Consensus 373 ngks~vCiLhEy~q~~lk~~pvyef-~e~~n~s--tpysa~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiL 441 (650)
T KOG4334|consen 373 NGKSKVCILHEYAQQCLKSLPVYEF-AENDNNS--TPYSAGVLPDLFPYGSGVGASKKTAKLVAARDTLEIL 441 (650)
T ss_pred CCceeeehHHHHHHHHhhhcceeeh-hhccCCC--CcccccccccccccccccccchHHHHHHHHHHHHHHh
Confidence 3457899999998744333333321 1111222 3599999999999999999999999999999999998
No 81
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=96.83 E-value=0.005 Score=63.10 Aligned_cols=39 Identities=10% Similarity=0.299 Sum_probs=34.6
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhh
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLL 206 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlL 206 (862)
++++||+.+++.+|+ .+-+.+.|.|+|.+.|+..+++.+
T Consensus 73 ~~l~pG~~e~l~~l~---~~g~~~~IvS~~~~~~i~~il~~~ 111 (219)
T PRK09552 73 AEIREGFHEFVQFVK---ENNIPFYVVSGGMDFFVYPLLQGL 111 (219)
T ss_pred CCcCcCHHHHHHHHH---HcCCeEEEECCCcHHHHHHHHHHh
Confidence 578999999888886 577999999999999999999874
No 82
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=96.82 E-value=0.00084 Score=68.09 Aligned_cols=90 Identities=8% Similarity=0.006 Sum_probs=55.7
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccC-eEEecc-CCCcc----chhhhcc
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLD-RIVCVK-SGSRK----SLFNVFQ 238 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~-RIisre-s~~~K----sL~~lfp 238 (862)
+++.||+.++++.| .+.+.|.||+.+.++..+++. ++...+|+ -|+|.+ .+..| .+..++.
T Consensus 87 ~~~~~gv~~~L~~L------~~~~~ivTn~~~~~~~~~l~~-------~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~ 153 (221)
T PRK10563 87 LEPIAGANALLESI------TVPMCVVSNGPVSKMQHSLGK-------TGMLHYFPDKLFSGYDIQRWKPDPALMFHAAE 153 (221)
T ss_pred CCcCCCHHHHHHHc------CCCEEEEeCCcHHHHHHHHHh-------cChHHhCcceEeeHHhcCCCCCChHHHHHHHH
Confidence 56679999955544 289999999999999998876 44444553 566763 23222 2333332
Q ss_pred CCCCCCcEEEEEcCCcccCCCCCCCCeEE
Q 002970 239 DGTCHPKMALVIDDRLKVWDDKDQPRVHV 267 (862)
Q Consensus 239 ~~~~~~~~vVIIDDR~dVW~~~~~~~v~v 267 (862)
...+.++-+|+|+|+..=........+.+
T Consensus 154 ~~~~~p~~~l~igDs~~di~aA~~aG~~~ 182 (221)
T PRK10563 154 AMNVNVENCILVDDSSAGAQSGIAAGMEV 182 (221)
T ss_pred HcCCCHHHeEEEeCcHhhHHHHHHCCCEE
Confidence 22256677899999865443322334444
No 83
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=96.80 E-value=0.0012 Score=71.88 Aligned_cols=75 Identities=23% Similarity=0.206 Sum_probs=62.6
Q ss_pred CCCCchHHHHHHhhhcCCCceeeecCCCCCCCC-CCccEEEEEEECCEEEeeeecCCHHHHHHHHHHHHHHHhhccc
Q 002970 740 KLMGSVSALKELCMTEGLGVVFQQQPPSSANSV-QKDEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRSMF 815 (862)
Q Consensus 740 ~~~N~V~lLnELcqkeGL~~~f~~e~v~~sGp~-H~keF~aqV~IdGkvyG~GtGsSKKeAKqqAAe~AL~aL~~~~ 815 (862)
..-+|..+|-+||.++|+.-+.... +.++|.- ..+.|+.-+--|.+.+|+|.|.|-|+|+++||..||.+++.+.
T Consensus 230 ql~~P~~~L~~lckr~~l~epe~Rl-l~esGr~S~~PvyvVgiYs~kkllGqG~Gesl~~A~e~AA~dAL~k~y~~t 305 (333)
T KOG3769|consen 230 QLQWPRRLLSRLCKRRGLKEPESRL-LAESGRNSAEPVYVVGIYSGKKLLGQGQGESLKLAEEQAARDALIKLYDHT 305 (333)
T ss_pred cccchHHHHHHHHHHcCCCCchhHH-HHHhccCccCceEEEEeecCchhhccCcchHHHHHHHHHHHHHHHHHHcCC
Confidence 4559999999999999998885543 3345554 3377888888899999999999999999999999999998765
No 84
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.76 E-value=0.0018 Score=65.17 Aligned_cols=79 Identities=18% Similarity=0.188 Sum_probs=52.8
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEecc-CCCcc----chhhhccC
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVK-SGSRK----SLFNVFQD 239 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisre-s~~~K----sL~~lfp~ 239 (862)
++.-|.+.+ +|+ +..++|.|+|.|||.+.++.+.++- .|...+|+.|++.+ -|..| -...++..
T Consensus 98 ~~~~~~~~~---~L~-~l~~~~~l~ilTNg~~~~~~~~l~~-------~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~ 166 (229)
T COG1011 98 LPDYPEALE---ALK-ELGKKYKLGILTNGARPHQERKLRQ-------LGLLDYFDAVFISEDVGVAKPDPEIFEYALEK 166 (229)
T ss_pred CccChhHHH---HHH-HHHhhccEEEEeCCChHHHHHHHHH-------cCChhhhheEEEecccccCCCCcHHHHHHHHH
Confidence 455566666 665 4344499999999999999999987 34445566777663 34333 33333333
Q ss_pred CCCCCcEEEEEcCCc
Q 002970 240 GTCHPKMALVIDDRL 254 (862)
Q Consensus 240 ~~~~~~~vVIIDDR~ 254 (862)
.+..++-+|.|||+.
T Consensus 167 ~g~~p~~~l~VgD~~ 181 (229)
T COG1011 167 LGVPPEEALFVGDSL 181 (229)
T ss_pred cCCCcceEEEECCCh
Confidence 335688999999985
No 85
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=96.73 E-value=0.0094 Score=59.58 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=35.5
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccc
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLIN 214 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg 214 (862)
+++.||+.+++.+|+ +. +.+.|.|++.+.++..+++.++=. .+|.
T Consensus 67 ~~~~pg~~e~L~~L~---~~-~~~~IvS~~~~~~~~~~l~~~gl~-~~f~ 111 (205)
T PRK13582 67 LDPLPGAVEFLDWLR---ER-FQVVILSDTFYEFAGPLMRQLGWP-TLFC 111 (205)
T ss_pred CCCCCCHHHHHHHHH---hc-CCEEEEeCCcHHHHHHHHHHcCCc-hhhc
Confidence 456799999888876 44 899999999999999998886533 3454
No 86
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=96.72 E-value=0.0071 Score=65.42 Aligned_cols=77 Identities=14% Similarity=0.102 Sum_probs=49.3
Q ss_pred CcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCCCccch--hhhccCCCCCCc
Q 002970 168 RPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSL--FNVFQDGTCHPK 245 (862)
Q Consensus 168 RPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~~~KsL--~~lfp~~~~~~~ 245 (862)
-||..+++.+|. ++-..++|.|+..+.+.....+.|.-.|--.- ..+.|+.+++...|.. ..|-. .-+
T Consensus 120 ipGA~e~L~~L~---~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~---~~d~lllr~~~~~K~~rr~~I~~----~y~ 189 (266)
T TIGR01533 120 VAGALDFLNYAN---SKGVKIFYVSNRSEKEKAATLKNLKRFGFPQA---DEEHLLLKKDKSSKESRRQKVQK----DYE 189 (266)
T ss_pred CccHHHHHHHHH---HCCCeEEEEeCCCcchHHHHHHHHHHcCcCCC---CcceEEeCCCCCCcHHHHHHHHh----cCC
Confidence 389999777776 56688999999887776655555544333110 1268888865543432 22322 246
Q ss_pred EEEEEcCCc
Q 002970 246 MALVIDDRL 254 (862)
Q Consensus 246 ~vVIIDDR~ 254 (862)
+++.|+|+.
T Consensus 190 Ivl~vGD~~ 198 (266)
T TIGR01533 190 IVLLFGDNL 198 (266)
T ss_pred EEEEECCCH
Confidence 799999983
No 87
>COG4996 Predicted phosphatase [General function prediction only]
Probab=96.48 E-value=0.0046 Score=61.10 Aligned_cols=93 Identities=18% Similarity=0.257 Sum_probs=63.5
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-CccchhhhccC----
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRKSLFNVFQD---- 239 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~-~~KsL~~lfp~---- 239 (862)
|+|+|.+.+++.+++ +.-|-+-.+|=+-.+-|.++++.||=. .||. =++--... .-+-|..++..
T Consensus 40 v~L~~~v~~~l~war---nsG~i~~~~sWN~~~kA~~aLral~~~-~yFh------y~ViePhP~K~~ML~~llr~i~~e 109 (164)
T COG4996 40 VHLFPDVKETLKWAR---NSGYILGLASWNFEDKAIKALRALDLL-QYFH------YIVIEPHPYKFLMLSQLLREINTE 109 (164)
T ss_pred EEEcHHHHHHHHHHH---hCCcEEEEeecCchHHHHHHHHHhchh-hhEE------EEEecCCChhHHHHHHHHHHHHHh
Confidence 899999999666665 677899999999999999999997755 3454 33332111 22334444431
Q ss_pred --CCCCCcEEEEEcCCc----ccCCCCCCCCeEEec
Q 002970 240 --GTCHPKMALVIDDRL----KVWDDKDQPRVHVVP 269 (862)
Q Consensus 240 --~~~~~~~vVIIDDR~----dVW~~~~~~~v~vV~ 269 (862)
--..|.-+|.+|||. ++|+.- .+|..++
T Consensus 110 r~~~ikP~~Ivy~DDR~iH~~~Iwe~~--G~V~~~~ 143 (164)
T COG4996 110 RNQKIKPSEIVYLDDRRIHFGNIWEYL--GNVKCLE 143 (164)
T ss_pred hccccCcceEEEEecccccHHHHHHhc--CCeeeeE
Confidence 113568899999996 678776 5665443
No 88
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=96.47 E-value=0.0068 Score=66.69 Aligned_cols=107 Identities=19% Similarity=0.290 Sum_probs=69.3
Q ss_pred EeeC-cChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCCCccchhhhccCCCCC
Q 002970 165 VRLR-PAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCH 243 (862)
Q Consensus 165 vKLR-Pgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~~~KsL~~lfp~~~~~ 243 (862)
+++| |++.+++..|+ .+-+.+.|+|+|.|.++..+++. ++...+|+-|+|-++...|.
T Consensus 146 v~irdp~V~EtL~eLk---ekGikLaIvTNg~Re~v~~~Le~-------lgL~~yFDvII~~g~i~~k~----------- 204 (303)
T PHA03398 146 VRIRDPFVYDSLDELK---ERGCVLVLWSYGNREHVVHSLKE-------TKLEGYFDIIICGGRKAGEY----------- 204 (303)
T ss_pred cccCChhHHHHHHHHH---HCCCEEEEEcCCChHHHHHHHHH-------cCCCccccEEEECCCccccc-----------
Confidence 4556 89999777776 56799999999999999999998 44445556788865433222
Q ss_pred CcEEEEEcCCcccCCCCCCCCeEEecccccccCchhhhc--cccchHHHHHHHHhhhcccchhcc
Q 002970 244 PKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEAN--NAIPVLCVARNIACNVRGGFFKEF 306 (862)
Q Consensus 244 ~~~vVIIDDR~dVW~~~~~~~v~vV~~Y~pf~~~q~e~~--~~~p~L~~a~~vl~~Vh~~FF~~~ 306 (862)
+.-+++|++.+ .+.+.. ||+....... -+.| -+++..|.+.-=.|||.+
T Consensus 205 -~~~~~~d~~~~--------~~~~~~---~f~~d~~~~~~lPKSp--rvVl~yL~~~gvn~~Kti 255 (303)
T PHA03398 205 -SRRVIVDNKYK--------MVFVKK---PFYLDVTDVKNLPKSP--RVVLWYLRKKGVNYFKTI 255 (303)
T ss_pred -ccceeecccce--------eEEecC---ceeEeCCcccCCCCCC--eehHHHHHHcCcceeccE
Confidence 24566666532 233333 3444432221 1233 558888888777889865
No 89
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=96.37 E-value=0.0049 Score=62.15 Aligned_cols=83 Identities=23% Similarity=0.158 Sum_probs=47.6
Q ss_pred EEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccC-CCcc----chhhhcc
Q 002970 164 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRK----SLFNVFQ 238 (862)
Q Consensus 164 ~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres-~~~K----sL~~lfp 238 (862)
.+++.|++.+++..|+ .+-|.++|+||+...+...+..++ . ++...+|+.|++.++ +..| -+..+..
T Consensus 92 ~~~~~~~~~~~L~~L~---~~g~~l~i~Sn~~~~~~~~~~~~~-~----~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~ 163 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLR---AKGFKTACITNNFPTDHSAEEALL-P----GDIMALFDAVVESCLEGLRKPDPRIYQLMLE 163 (211)
T ss_pred ccccChhHHHHHHHHH---HCCCeEEEEeCCCCccchhhhHhh-h----hhhHhhCCEEEEeeecCCCCCCHHHHHHHHH
Confidence 3678899999777776 456999999999866522222221 1 122345567776532 2222 2222222
Q ss_pred CCCCCCcEEEEEcCCc
Q 002970 239 DGTCHPKMALVIDDRL 254 (862)
Q Consensus 239 ~~~~~~~~vVIIDDR~ 254 (862)
.....++-+|+|||+.
T Consensus 164 ~~g~~~~~~l~i~D~~ 179 (211)
T TIGR02247 164 RLGVAPEECVFLDDLG 179 (211)
T ss_pred HcCCCHHHeEEEcCCH
Confidence 1124566677779974
No 90
>PHA02597 30.2 hypothetical protein; Provisional
Probab=96.36 E-value=0.011 Score=59.18 Aligned_cols=82 Identities=10% Similarity=0.100 Sum_probs=49.7
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCCCcc--chhhhccCCCC
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRK--SLFNVFQDGTC 242 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~~~K--sL~~lfp~~~~ 242 (862)
+++.||+.+++..|+ +.|.++|.|++.......+.+.+.-. .+|. .+|+.|++.++...| -+..+...-
T Consensus 73 ~~~~pG~~e~L~~L~----~~~~~~i~Tn~~~~~~~~~~~~~~l~-~~f~--~~f~~i~~~~~~~~kp~~~~~a~~~~-- 143 (197)
T PHA02597 73 LSAYDDALDVINKLK----EDYDFVAVTALGDSIDALLNRQFNLN-ALFP--GAFSEVLMCGHDESKEKLFIKAKEKY-- 143 (197)
T ss_pred ccCCCCHHHHHHHHH----hcCCEEEEeCCccchhHHHHhhCCHH-HhCC--CcccEEEEeccCcccHHHHHHHHHHh--
Confidence 567899999777775 23668888998876555555555322 4443 245677776554222 222222211
Q ss_pred CCcEEEEEcCCcc
Q 002970 243 HPKMALVIDDRLK 255 (862)
Q Consensus 243 ~~~~vVIIDDR~d 255 (862)
.++.+|+|||+..
T Consensus 144 ~~~~~v~vgDs~~ 156 (197)
T PHA02597 144 GDRVVCFVDDLAH 156 (197)
T ss_pred CCCcEEEeCCCHH
Confidence 1567999999853
No 91
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=96.31 E-value=0.0012 Score=64.28 Aligned_cols=73 Identities=16% Similarity=0.079 Sum_probs=49.4
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccC-CCccc----hhhhccC
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRKS----LFNVFQD 239 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres-~~~Ks----L~~lfp~ 239 (862)
+++.||+.+ +|+ .|.|.||+.+.+...+++.+ +...+++.|+|.++ +..|- ...++..
T Consensus 89 ~~~~~g~~~---~L~-------~~~i~Tn~~~~~~~~~l~~~-------~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~ 151 (175)
T TIGR01493 89 LPPWPDSAA---ALA-------RVAILSNASHWAFDQFAQQA-------GLPWYFDRAFSVDTVRAYKPDPVVYELVFDT 151 (175)
T ss_pred CCCCCchHH---HHH-------HHhhhhCCCHHHHHHHHHHC-------CCHHHHhhhccHhhcCCCCCCHHHHHHHHHH
Confidence 467899988 775 28899999999999998874 33445567888754 32221 1222221
Q ss_pred CCCCCcEEEEEcCCc
Q 002970 240 GTCHPKMALVIDDRL 254 (862)
Q Consensus 240 ~~~~~~~vVIIDDR~ 254 (862)
.++.++-+|+|+|+.
T Consensus 152 ~~~~p~~~l~vgD~~ 166 (175)
T TIGR01493 152 VGLPPDRVLMVAAHQ 166 (175)
T ss_pred HCCCHHHeEeEecCh
Confidence 125678899999983
No 92
>PRK08238 hypothetical protein; Validated
Probab=96.29 E-value=0.02 Score=66.56 Aligned_cols=79 Identities=14% Similarity=0.139 Sum_probs=53.4
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-C----cc--chhhhc
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-S----RK--SLFNVF 237 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~-~----~K--sL~~lf 237 (862)
+.++|++.++.+.++ ++-+.+.|.|++.+.|++.+++.+. +|+.|++-++. + .| .|...+
T Consensus 71 lp~~pga~e~L~~lk---~~G~~v~LaTas~~~~a~~i~~~lG----------lFd~Vigsd~~~~~kg~~K~~~l~~~l 137 (479)
T PRK08238 71 LPYNEEVLDYLRAER---AAGRKLVLATASDERLAQAVAAHLG----------LFDGVFASDGTTNLKGAAKAAALVEAF 137 (479)
T ss_pred CCCChhHHHHHHHHH---HCCCEEEEEeCCCHHHHHHHHHHcC----------CCCEEEeCCCccccCCchHHHHHHHHh
Confidence 357799999555554 6779999999999999999999962 24688887543 1 12 233334
Q ss_pred cCCCCCCcEEEEEcCCc---ccCCCCC
Q 002970 238 QDGTCHPKMALVIDDRL---KVWDDKD 261 (862)
Q Consensus 238 p~~~~~~~~vVIIDDR~---dVW~~~~ 261 (862)
+ ++.++.+.|+. .+|...+
T Consensus 138 ~-----~~~~~yvGDS~~Dlp~~~~A~ 159 (479)
T PRK08238 138 G-----ERGFDYAGNSAADLPVWAAAR 159 (479)
T ss_pred C-----ccCeeEecCCHHHHHHHHhCC
Confidence 3 23345567766 4787774
No 93
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=96.26 E-value=0.0069 Score=66.57 Aligned_cols=52 Identities=23% Similarity=0.333 Sum_probs=40.8
Q ss_pred EeeC-cChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEecc
Q 002970 165 VRLR-PAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVK 226 (862)
Q Consensus 165 vKLR-Pgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisre 226 (862)
+++| |++.|++..|+ ++.+-+.|+|.|.|.++.++++. +|...+|+-|+|-.
T Consensus 144 v~irdPgV~EaL~~Lk---ekGikLaIaTS~~Re~v~~~L~~-------lGLd~YFdvIIs~G 196 (301)
T TIGR01684 144 VRIRDPRIYDSLTELK---KRGCILVLWSYGDRDHVVESMRK-------VKLDRYFDIIISGG 196 (301)
T ss_pred cccCCHHHHHHHHHHH---HCCCEEEEEECCCHHHHHHHHHH-------cCCCcccCEEEECC
Confidence 4566 89999777776 56789999999999999999998 44444556788754
No 94
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=96.15 E-value=0.02 Score=58.62 Aligned_cols=47 Identities=6% Similarity=0.222 Sum_probs=38.8
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccc
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLIN 214 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg 214 (862)
+++|||+.+++.+|+ ..-+.++|.|.|.+.|+..+++.+.+...+|+
T Consensus 69 ~~l~pg~~e~l~~l~---~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~ 115 (214)
T TIGR03333 69 AEIREGFREFVAFIN---EHGIPFYVISGGMDFFVYPLLEGIVEKDRIYC 115 (214)
T ss_pred CcccccHHHHHHHHH---HCCCeEEEECCCcHHHHHHHHHhhCCcccEEe
Confidence 678999999888886 56789999999999999999988755444444
No 95
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=96.10 E-value=0.015 Score=58.54 Aligned_cols=82 Identities=22% Similarity=0.180 Sum_probs=50.4
Q ss_pred EEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccC-CCccc----hhhhcc
Q 002970 164 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRKS----LFNVFQ 238 (862)
Q Consensus 164 ~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres-~~~Ks----L~~lfp 238 (862)
+.++.|++.++++.|+ ++-|.++|.||+.+.....+... +.+...+|+.|++-++ +..|. +..+..
T Consensus 82 ~~~~~~g~~e~L~~l~---~~g~~~~i~Sn~~~~~~~~~~~~------~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~ 152 (199)
T PRK09456 82 FVALRPEVIAIMHKLR---EQGHRVVVLSNTNRLHTTFWPEE------YPEVRAAADHIYLSQDLGMRKPEARIYQHVLQ 152 (199)
T ss_pred HhccCHHHHHHHHHHH---hCCCcEEEEcCCchhhHHHHHhh------chhHHHhcCEEEEecccCCCCCCHHHHHHHHH
Confidence 3567899999777776 45699999999998876543322 1122334567776533 22221 222222
Q ss_pred CCCCCCcEEEEEcCCc
Q 002970 239 DGTCHPKMALVIDDRL 254 (862)
Q Consensus 239 ~~~~~~~~vVIIDDR~ 254 (862)
.....++-+|+|||+.
T Consensus 153 ~~~~~p~~~l~vgD~~ 168 (199)
T PRK09456 153 AEGFSAADAVFFDDNA 168 (199)
T ss_pred HcCCChhHeEEeCCCH
Confidence 1225678899999985
No 96
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=95.89 E-value=0.024 Score=58.52 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=35.5
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccc
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLIN 214 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg 214 (862)
++++||+.+++.+|+ + .+.+.|.|.|.+.|+..+++.|.=+ .+|.
T Consensus 67 i~l~pga~ell~~lk-~---~~~~~IVS~~~~~~~~~il~~lgi~-~~~a 111 (203)
T TIGR02137 67 LKPLEGAVEFVDWLR-E---RFQVVILSDTFYEFSQPLMRQLGFP-TLLC 111 (203)
T ss_pred CCCCccHHHHHHHHH-h---CCeEEEEeCChHHHHHHHHHHcCCc-hhhc
Confidence 457899999777775 2 3699999999999999999996543 3454
No 97
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=95.81 E-value=0.02 Score=59.53 Aligned_cols=76 Identities=16% Similarity=0.160 Sum_probs=52.2
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC---------Cccchhh
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG---------SRKSLFN 235 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~---------~~KsL~~ 235 (862)
+++.||+.+++..|+ ++..-+-|.|...|.-+..+++. .+..++|+=|++.++. ..+...+
T Consensus 85 ~~~~pGv~~~l~~L~---~~~i~~avaS~s~~~~~~~~L~~-------~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~ 154 (221)
T COG0637 85 LKPIPGVVELLEQLK---ARGIPLAVASSSPRRAAERVLAR-------LGLLDYFDVIVTADDVARGKPAPDIYLLAAER 154 (221)
T ss_pred CCCCccHHHHHHHHH---hcCCcEEEecCChHHHHHHHHHH-------ccChhhcchhccHHHHhcCCCCCHHHHHHHHH
Confidence 567799999777776 33388999999999999998877 3434444555554321 2344555
Q ss_pred hccCCCCCCcEEEEEcCCc
Q 002970 236 VFQDGTCHPKMALVIDDRL 254 (862)
Q Consensus 236 lfp~~~~~~~~vVIIDDR~ 254 (862)
+- ..+.-||+|+|..
T Consensus 155 Lg----v~P~~CvviEDs~ 169 (221)
T COG0637 155 LG----VDPEECVVVEDSP 169 (221)
T ss_pred cC----CChHHeEEEecch
Confidence 42 3578899999974
No 98
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=95.46 E-value=0.076 Score=56.71 Aligned_cols=52 Identities=12% Similarity=0.336 Sum_probs=39.7
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEe
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVC 224 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIis 224 (862)
+.+.||..++.+||. +...-||++|-..|+--|-+.|++. .|...++..|+|
T Consensus 70 ip~~pgm~~~l~~l~-~~~~~~~~~IiSDaNs~fI~~iL~~-------~gl~~~f~~I~T 121 (234)
T PF06888_consen 70 IPIDPGMKELLRFLA-KNQRGFDLIIISDANSFFIETILEH-------HGLRDCFSEIFT 121 (234)
T ss_pred CCCCccHHHHHHHHH-hcCCCceEEEEeCCcHhHHHHHHHh-------CCCccccceEEe
Confidence 445689999888885 4467899999999999999999988 444444445554
No 99
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=95.44 E-value=0.031 Score=58.29 Aligned_cols=80 Identities=13% Similarity=0.079 Sum_probs=50.6
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-Cccc----hhhhccC
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRKS----LFNVFQD 239 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~-~~Ks----L~~lfp~ 239 (862)
+++-|++.+++..|+ +.|-+.|.|||+..- ..++...+|+.|++-++. ..|- +..++..
T Consensus 112 ~~~~~gv~~~L~~L~----~~~~l~i~Tn~~~~~------------~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~ 175 (238)
T PRK10748 112 IDVPQATHDTLKQLA----KKWPLVAITNGNAQP------------ELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEK 175 (238)
T ss_pred CCCCccHHHHHHHHH----cCCCEEEEECCCchH------------HHCCcHHhhceeEecccCCcCCCcHHHHHHHHHH
Confidence 456689999666664 348999999998751 236666777888876432 2222 2222222
Q ss_pred CCCCCcEEEEEcCC--cccCCCC
Q 002970 240 GTCHPKMALVIDDR--LKVWDDK 260 (862)
Q Consensus 240 ~~~~~~~vVIIDDR--~dVW~~~ 260 (862)
..+.++-+|+|.|+ .||-..+
T Consensus 176 ~~~~~~~~~~VGD~~~~Di~~A~ 198 (238)
T PRK10748 176 LNVPIGEILHVGDDLTTDVAGAI 198 (238)
T ss_pred cCCChhHEEEEcCCcHHHHHHHH
Confidence 22567778888777 5786554
No 100
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=95.43 E-value=0.062 Score=56.09 Aligned_cols=86 Identities=17% Similarity=0.150 Sum_probs=56.7
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCc---ccccc--ccCeEEec---cCCCccchhhh
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNL---INTKE--LLDRIVCV---KSGSRKSLFNV 236 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~l---Fg~~~--l~~RIisr---es~~~KsL~~l 236 (862)
++++|+.++|..+|+ +.-+.+.|.|-|-..|+..|++.|.-+..+ +...+ +..+|+.. ..+..+.|.++
T Consensus 76 ~~l~~ga~elv~~lk---~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~ 152 (212)
T COG0560 76 LRLTPGAEELVAALK---AAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALREL 152 (212)
T ss_pred CcCCccHHHHHHHHH---HCCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHH
Confidence 788999999999998 778999999999999999999998765321 00000 11344322 22334556666
Q ss_pred ccCCCCCCcEEEEEcCC
Q 002970 237 FQDGTCHPKMALVIDDR 253 (862)
Q Consensus 237 fp~~~~~~~~vVIIDDR 253 (862)
+.......+-++.+-|.
T Consensus 153 ~~~~g~~~~~~~a~gDs 169 (212)
T COG0560 153 AAELGIPLEETVAYGDS 169 (212)
T ss_pred HHHcCCCHHHeEEEcCc
Confidence 65322344566666665
No 101
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=95.33 E-value=0.061 Score=59.60 Aligned_cols=41 Identities=17% Similarity=0.112 Sum_probs=34.7
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCC
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDP 208 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP 208 (862)
++++||+++|+..|+ +.-|.+.|+|.|...+++.+.+.|+=
T Consensus 180 l~l~pGa~elL~~Lk---~~G~~~aIvSgg~~~~~~~l~~~Lgl 220 (322)
T PRK11133 180 LPLMPGLTELVLKLQ---ALGWKVAIASGGFTYFADYLRDKLRL 220 (322)
T ss_pred CCCChhHHHHHHHHH---HcCCEEEEEECCcchhHHHHHHHcCC
Confidence 567899999888887 56689999999999999988887643
No 102
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=95.26 E-value=0.034 Score=68.15 Aligned_cols=198 Identities=13% Similarity=0.075 Sum_probs=113.9
Q ss_pred chHHHHHHHHhcCCCeEEEEeeec-CCCceEEEEEEECCEEE-EEeecCCHHHHHHHHHHHHHHHHHhhhhccccCCCCC
Q 002970 612 PSGVLQDIAMKCGTKVEFRPALVA-STELQFSIEAWFAGEKI-GEGIGRTRREAQRQAAEGSIKHLANVYMLRVKSDSGS 689 (862)
Q Consensus 612 ~KS~LQE~~QK~~~~l~Y~~v~~~-~Hdk~Ftv~V~i~G~~~-G~G~GkSKKeAEq~AA~~AL~~L~~~~~a~~~~~~~~ 689 (862)
-|+.|-.|+-|..+.+.|.+-.+. .....|.++|.+.+..+ +.|--.+||.|+..||+.-.+-|.-.-+...+..+++
T Consensus 3 ~k~fly~~~~k~~~~p~~d~~~~~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylvr~Gk~n~~d~p~~ 82 (1282)
T KOG0921|consen 3 VKEFLYAWLGKNKYGPTYDIRSEGRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLVREGKMQQSDIPTL 82 (1282)
T ss_pred HHHHHHHHHhhhccCcceehhhhcccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhhhhccccccCCccc
Confidence 478888999999988999975443 34568999999988665 3444445999999999999988865433333322222
Q ss_pred CCC---CCCCCCCccc-ccccCCCCCCCCCCCCCC--CC------CCC-CCCCcCCccc-------------------cC
Q 002970 690 GHG---DGSRFSNANE-NCFMGEINSFGGQPLAKD--ES------LSS-EPSKLVDPRL-------------------EG 737 (862)
Q Consensus 690 ~~s---D~~~~p~~~e-N~f~~~~~s~~~~~~~~~--d~------~ss-~~srl~~~~l-------------------d~ 737 (862)
..+ |++-.-+.++ ..|....--+.+++.+.+ +. +.. ...+...+.+ ..
T Consensus 83 ~s~s~~~~~~l~~~~~a~~~~~~~~g~~~q~~~qd~p~~~~p~~~d~~~~~~g~~~~~~~qkae~~~e~ea~d~~~~ihg 162 (1282)
T KOG0921|consen 83 TSSSLEASSTWQDSETATMFCGGEDGNSFQESQQPIPQKRFPWSNNAYQRNEGTHEQYITQKAEEIAESETVDLNAEIHG 162 (1282)
T ss_pred ccccccCcccccccccccccccccccccCCCCCCCcccccccccccccccCCCCCchhHHHHhhhhhhhhhhccCccccC
Confidence 111 1110000000 001111000000111000 00 000 0000000000 01
Q ss_pred CcCCCCchHHHHHHhhhcCCCceeeecCCCCCCCCCCccEEEEEEE-----CCEEEeeeecCCHHHHHHHHHHHHHHHhh
Q 002970 738 SKKLMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEI-----DGQVLGKGIGSTWDEAKMQAAEKALGSLR 812 (862)
Q Consensus 738 ~~~~~N~V~lLnELcqkeGL~~~f~~e~v~~sGp~H~keF~aqV~I-----dGkvyG~GtGsSKKeAKqqAAe~AL~aL~ 812 (862)
-.+..|-+..||++-+++.+..+|... .-|+.|.++|++...| .-++-+.++|++||.|...-|..-.+.|+
T Consensus 163 ~wt~eN~K~~ln~~~q~~~~~~~y~~~---~~g~~~~~s~~~e~si~v~~~~~~~~~~~~gsnkk~~~~~ca~s~vrqm~ 239 (1282)
T KOG0921|consen 163 NWTMENAKKALNEYLQKMRIQDNYKYT---IVGPEHVRSFEAEASIYVPQLNRNLVAKETGSNKKVAEASCALSLVRQLF 239 (1282)
T ss_pred CCCcchhHHHHhHHHhhhhhcccccee---ecCCccccchhhhHHHhhhhhchhhhhhhccccceecCcchHHHHHHHHH
Confidence 122347789999999999887776543 3689999999976554 55666789999999988777766666664
No 103
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=95.20 E-value=0.031 Score=61.09 Aligned_cols=81 Identities=16% Similarity=0.142 Sum_probs=50.2
Q ss_pred CcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCCCccchhhhccCCCCCCcEE
Q 002970 168 RPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMA 247 (862)
Q Consensus 168 RPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~~~KsL~~lfp~~~~~~~~v 247 (862)
.|++.+++..|+ ..-+-+.|||+..+..|.++++. ....|+..+.|.-+.+........+..+.......+.-+
T Consensus 33 ~~~~~e~L~~L~---~~Gi~lai~S~n~~~~a~~~l~~---~~~~~~~~~~f~~~~~~~~pk~~~i~~~~~~l~i~~~~~ 106 (320)
T TIGR01686 33 HKTLQEKIKTLK---KQGFLLALASKNDEDDAKKVFER---RKDFILQAEDFDARSINWGPKSESLRKIAKKLNLGTDSF 106 (320)
T ss_pred HHHHHHHHHHHH---hCCCEEEEEcCCCHHHHHHHHHh---CccccCcHHHeeEEEEecCchHHHHHHHHHHhCCCcCcE
Confidence 478888666665 56789999999999999988875 112333333344443332223333444433222567789
Q ss_pred EEEcCCc
Q 002970 248 LVIDDRL 254 (862)
Q Consensus 248 VIIDDR~ 254 (862)
|+|||+.
T Consensus 107 vfidD~~ 113 (320)
T TIGR01686 107 LFIDDNP 113 (320)
T ss_pred EEECCCH
Confidence 9999964
No 104
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=95.17 E-value=0.09 Score=66.59 Aligned_cols=79 Identities=19% Similarity=0.102 Sum_probs=53.7
Q ss_pred eCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-Cccc----hhhhccCCC
Q 002970 167 LRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRKS----LFNVFQDGT 241 (862)
Q Consensus 167 LRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~-~~Ks----L~~lfp~~~ 241 (862)
+-||+.+|+++|+ ++-|.+.|.|++.+.++..+++-++=.. .+|+.|++.++. ..|. +..+.....
T Consensus 162 ~~pG~~elL~~Lk---~~G~~l~IvSn~~~~~~~~~L~~~gl~~------~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lg 232 (1057)
T PLN02919 162 GFPGALELITQCK---NKGLKVAVASSADRIKVDANLAAAGLPL------SMFDAIVSADAFENLKPAPDIFLAAAKILG 232 (1057)
T ss_pred cCccHHHHHHHHH---hCCCeEEEEeCCcHHHHHHHHHHcCCCh------hHCCEEEECcccccCCCCHHHHHHHHHHcC
Confidence 4699999999987 5679999999999999999988743222 345688887543 2221 222221112
Q ss_pred CCCcEEEEEcCCc
Q 002970 242 CHPKMALVIDDRL 254 (862)
Q Consensus 242 ~~~~~vVIIDDR~ 254 (862)
..++-+|+|+|+.
T Consensus 233 v~p~e~v~IgDs~ 245 (1057)
T PLN02919 233 VPTSECVVIEDAL 245 (1057)
T ss_pred cCcccEEEEcCCH
Confidence 4667789999985
No 105
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=95.07 E-value=0.074 Score=56.72 Aligned_cols=72 Identities=8% Similarity=0.020 Sum_probs=45.3
Q ss_pred cChHHHHHHHhhhccccEEEEEEeCC----cHHHHHHHHHhhCCCCCccccccccCeEEeccCC-Ccc-chhhhccCCCC
Q 002970 169 PAWEDLRSYLTARGRKRFEVYVCTMA----ERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK-SLFNVFQDGTC 242 (862)
Q Consensus 169 Pgv~eLr~FL~a~~sk~FEl~VyTmG----~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~-~~K-sL~~lfp~~~~ 242 (862)
|++.+|+.+|. .+-+.++|+|+. .+.++..+++.+ |..+.+.-|++.++. ..| .-...+.
T Consensus 117 ~~a~elL~~l~---~~G~~i~iVTnr~~~k~~~~a~~ll~~l-------Gi~~~f~~i~~~d~~~~~Kp~~~~~l~---- 182 (237)
T TIGR01672 117 EVARQLIDMHQ---RRGDAIFFVTGRTPGKTDTVSKTLAKNF-------HIPAMNPVIFAGDKPGQYQYTKTQWIQ---- 182 (237)
T ss_pred hHHHHHHHHHH---HCCCEEEEEeCCCCCcCHHHHHHHHHHh-------CCchheeEEECCCCCCCCCCCHHHHHH----
Confidence 45999777776 677999999998 677999999874 433444556665442 111 1112222
Q ss_pred CCcEEEEEcCCc
Q 002970 243 HPKMALVIDDRL 254 (862)
Q Consensus 243 ~~~~vVIIDDR~ 254 (862)
....++.|.|+.
T Consensus 183 ~~~i~i~vGDs~ 194 (237)
T TIGR01672 183 DKNIRIHYGDSD 194 (237)
T ss_pred hCCCeEEEeCCH
Confidence 234467777764
No 106
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=95.05 E-value=0.0089 Score=59.60 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=37.3
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccc
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLIN 214 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg 214 (862)
.+++|++.+++..|+ +.-+.++|.|++.+.|+..+++.|.=+ .+|+
T Consensus 86 ~~~~~~~~~~l~~l~---~~g~~v~ivS~s~~~~v~~~~~~lg~~-~~~~ 131 (202)
T TIGR01490 86 SILYPEARDLIRWHK---AEGHTIVLVSASLTILVKPLARILGID-NAIG 131 (202)
T ss_pred HhccHHHHHHHHHHH---HCCCEEEEEeCCcHHHHHHHHHHcCCc-ceEe
Confidence 467899999777776 566899999999999999999987654 3566
No 107
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=94.90 E-value=0.036 Score=66.31 Aligned_cols=60 Identities=23% Similarity=0.273 Sum_probs=45.8
Q ss_pred ccccchHHHHHHHHhhhcccchhcchhhhhhccccccccCcCCCCCCCCccccceeccccccccCCCCCccCCCC
Q 002970 282 NNAIPVLCVARNIACNVRGGFFKEFDEGLLQRIPEISYEDDVKDIPSPPDVSNYLVSEDDAATANGIKDPLSFDG 356 (862)
Q Consensus 282 ~~~~p~L~~a~~vl~~Vh~~FF~~~de~l~~ri~ev~~e~~~~~~~~~pDv~~~l~~e~~~~~~~~~~~~~~~~g 356 (862)
...++.|...+++|++||..||...+ +....+..+||+. ++.|-+-.++-||.+++.+-.
T Consensus 394 ~~~D~~L~~~~kvl~~vH~~ff~~~~--------------~~~e~~~~~Dvr~-~i~~~~~~v~~~~~~vfSg~~ 453 (635)
T KOG0323|consen 394 SDEDGELANLLKVLKPVHKGFFAKYD--------------EVEETLESPDVRL-LIPELRTKVLKGSQIVFSGLH 453 (635)
T ss_pred cccchhHHHHhhhhcccchhhhhccc--------------cccccccCCChhh-hhhhhhhHHhhccceeecccc
Confidence 44456899999999999999999765 2234455899999 677777777888888876533
No 108
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=94.79 E-value=0.036 Score=58.92 Aligned_cols=78 Identities=21% Similarity=0.324 Sum_probs=59.0
Q ss_pred eCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-----------Cccchhh
Q 002970 167 LRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-----------SRKSLFN 235 (862)
Q Consensus 167 LRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~-----------~~KsL~~ 235 (862)
|-|-+ .||++|- .+.+++ .+|||||-|..|..+++. +|.+++|+.|+|-+.. ..+..+.
T Consensus 99 LkPD~-~LRnlLL-~l~~r~-k~~FTNa~k~HA~r~Lk~-------LGieDcFegii~~e~~np~~~~~vcKP~~~afE~ 168 (244)
T KOG3109|consen 99 LKPDP-VLRNLLL-SLKKRR-KWIFTNAYKVHAIRILKK-------LGIEDCFEGIICFETLNPIEKTVVCKPSEEAFEK 168 (244)
T ss_pred cCCCH-HHHHHHH-hCcccc-EEEecCCcHHHHHHHHHH-------hChHHhccceeEeeccCCCCCceeecCCHHHHHH
Confidence 44444 2677888 777877 999999999999999999 8999999999998532 2244555
Q ss_pred hccCCCC-CCcEEEEEcCCc
Q 002970 236 VFQDGTC-HPKMALVIDDRL 254 (862)
Q Consensus 236 lfp~~~~-~~~~vVIIDDR~ 254 (862)
++.-.+. +++-++++||+.
T Consensus 169 a~k~agi~~p~~t~FfDDS~ 188 (244)
T KOG3109|consen 169 AMKVAGIDSPRNTYFFDDSE 188 (244)
T ss_pred HHHHhCCCCcCceEEEcCch
Confidence 5443223 488999999985
No 109
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=94.38 E-value=0.035 Score=53.06 Aligned_cols=86 Identities=16% Similarity=0.179 Sum_probs=56.7
Q ss_pred eeCcChHHHHHHHhhhccccEEEEEEeCC-cHHHHHHHHHhhCCCCCccccccccCeEEeccC-CCccchhhhccCCC--
Q 002970 166 RLRPAWEDLRSYLTARGRKRFEVYVCTMA-ERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRKSLFNVFQDGT-- 241 (862)
Q Consensus 166 KLRPgv~eLr~FL~a~~sk~FEl~VyTmG-~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres-~~~KsL~~lfp~~~-- 241 (862)
++.||+.+++..|+ +.-|.+.|.|++ .+.|+..+++.+.+.+.+.+...+|+-+++-+. ...+.+..+....+
T Consensus 29 ~~~~gv~e~L~~Lk---~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~~~~~~~~pkp~~~~~a~~~lg~~ 105 (128)
T TIGR01681 29 VTIKEIRDKLQTLK---KNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDPLTIGYWLPKSPRLVEIALKLNGV 105 (128)
T ss_pred HHHHHHHHHHHHHH---HCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhhhhhcCCCcHHHHHHHHHHHhcCC
Confidence 56699999888886 567999999999 999999999987642222223344556555422 22222332222222
Q ss_pred CCCcEEEEEcCCc
Q 002970 242 CHPKMALVIDDRL 254 (862)
Q Consensus 242 ~~~~~vVIIDDR~ 254 (862)
+.++-+++|||+.
T Consensus 106 ~~p~~~l~igDs~ 118 (128)
T TIGR01681 106 LKPKSILFVDDRP 118 (128)
T ss_pred CCcceEEEECCCH
Confidence 5678999999985
No 110
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=94.25 E-value=0.14 Score=54.67 Aligned_cols=38 Identities=8% Similarity=-0.033 Sum_probs=30.8
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeC----CcHHHHHHHHHh
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTM----AERDYALEMWRL 205 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTm----G~R~YA~~I~rl 205 (862)
.++-||+.+|+.+|. .+-++|+|.|+ ..+.++..+++.
T Consensus 113 a~p~~Ga~elL~~L~---~~G~~I~iVTnR~~~k~~~t~~~Llk~ 154 (237)
T PRK11009 113 SIPKEVARQLIDMHV---KRGDSIYFITGRTATKTETVSKTLADD 154 (237)
T ss_pred CcchHHHHHHHHHHH---HCCCeEEEEeCCCCcccHHHHHHHHHH
Confidence 556678999777776 67899999998 567789988885
No 111
>PRK11590 hypothetical protein; Provisional
Probab=94.09 E-value=0.079 Score=54.36 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=32.7
Q ss_pred EeeCcChHHHH-HHHhhhccccEEEEEEeCCcHHHHHHHHHhhC
Q 002970 165 VRLRPAWEDLR-SYLTARGRKRFEVYVCTMAERDYALEMWRLLD 207 (862)
Q Consensus 165 vKLRPgv~eLr-~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLD 207 (862)
++++|++.+++ ..|+ +.-+.+.|.|+..+.|+..+++.|.
T Consensus 94 ~~~~pga~e~L~~~l~---~~G~~l~IvSas~~~~~~~il~~l~ 134 (211)
T PRK11590 94 VTAFPVVQERLTTYLL---SSDADVWLITGSPQPLVEQVYFDTP 134 (211)
T ss_pred CcCCccHHHHHHHHHH---hCCCEEEEEeCCcHHHHHHHHHHcc
Confidence 46689999955 4554 5689999999999999999998743
No 112
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=92.64 E-value=1 Score=44.68 Aligned_cols=80 Identities=14% Similarity=0.135 Sum_probs=53.7
Q ss_pred EEEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEecc--CCCccchhhhccCC
Q 002970 163 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVK--SGSRKSLFNVFQDG 240 (862)
Q Consensus 163 ~~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisre--s~~~KsL~~lfp~~ 240 (862)
+...+||++.+++..|+ ..-+.++|+|..++..|..+++.|.-.. ..|+++. ....|.+.++....
T Consensus 124 ~~d~~~~~~~~~l~~L~---~~Gi~~~i~TGD~~~~a~~~~~~lgi~~---------~~v~a~~~~kP~~k~~~~~i~~l 191 (215)
T PF00702_consen 124 LRDPLRPGAKEALQELK---EAGIKVAILTGDNESTASAIAKQLGIFD---------SIVFARVIGKPEPKIFLRIIKEL 191 (215)
T ss_dssp EEEEBHTTHHHHHHHHH---HTTEEEEEEESSEHHHHHHHHHHTTSCS---------EEEEESHETTTHHHHHHHHHHHH
T ss_pred ecCcchhhhhhhhhhhh---ccCcceeeeecccccccccccccccccc---------ccccccccccccchhHHHHHHHH
Confidence 45678999999777776 4568999999999999999999976521 1233333 44444333333221
Q ss_pred CCCCcEEEEEcCCc
Q 002970 241 TCHPKMALVIDDRL 254 (862)
Q Consensus 241 ~~~~~~vVIIDDR~ 254 (862)
...+.-|+.|.|..
T Consensus 192 ~~~~~~v~~vGDg~ 205 (215)
T PF00702_consen 192 QVKPGEVAMVGDGV 205 (215)
T ss_dssp TCTGGGEEEEESSG
T ss_pred hcCCCEEEEEccCH
Confidence 13456788888864
No 113
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=91.19 E-value=0.25 Score=45.28 Aligned_cols=63 Identities=21% Similarity=0.078 Sum_probs=36.7
Q ss_pred hHHHHHHhhhcCCC------ceeeecCCCCCCCCCCccEEEEEEECC-----EEEeeeecCCHHHHHHHHHHHHHHHhhc
Q 002970 745 VSALKELCMTEGLG------VVFQQQPPSSANSVQKDEVYAQVEIDG-----QVLGKGIGSTWDEAKMQAAEKALGSLRS 813 (862)
Q Consensus 745 V~lLnELcqkeGL~------~~f~~e~v~~sGp~H~keF~aqV~IdG-----kvyG~GtGsSKKeAKqqAAe~AL~aL~~ 813 (862)
|++||+||+...-. ..|+-. .....|.++|.+=. .+.|. .-+|||.||+.||-+|+..|..
T Consensus 2 i~lL~~yC~~Lp~d~~~~~~P~~~~~-------~~~~~~~c~v~LP~~~pi~~i~g~-~~~sk~~AK~sAAf~Ac~~L~~ 73 (90)
T PF03368_consen 2 ISLLNRYCSTLPSDSFTNLKPEFEIE-------KIGSGFICTVILPINSPIRSIEGP-PMRSKKLAKRSAAFEACKKLHE 73 (90)
T ss_dssp HHHHHHHHTTSSS-TT--SS-EEEEE-------E--G-EEEEEE--TT-SS--EEEE---SSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCccCCceEEEE-------EcCCcEEEEEECCCCCCCCeEEcc-ccccHHHHHHHHHHHHHHHHHH
Confidence 67899999843221 112211 00115777766521 24544 6789999999999999999986
Q ss_pred cc
Q 002970 814 MF 815 (862)
Q Consensus 814 ~~ 815 (862)
+.
T Consensus 74 ~g 75 (90)
T PF03368_consen 74 AG 75 (90)
T ss_dssp H-
T ss_pred cC
Confidence 53
No 114
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=90.84 E-value=0.9 Score=46.50 Aligned_cols=88 Identities=19% Similarity=0.260 Sum_probs=46.4
Q ss_pred EEEeeCcChHHHHHHHhhhccccEEEEEEe-CCcHHHHHHHHHhhCCC---CCccccccccCeEEeccCC-Cccchhhhc
Q 002970 163 VLVRLRPAWEDLRSYLTARGRKRFEVYVCT-MAERDYALEMWRLLDPE---SNLINTKELLDRIVCVKSG-SRKSLFNVF 237 (862)
Q Consensus 163 ~~vKLRPgv~eLr~FL~a~~sk~FEl~VyT-mG~R~YA~~I~rlLDP~---g~lFg~~~l~~RIisres~-~~KsL~~lf 237 (862)
.-++|-|.+.+++.-|+ ..-.+|-|.+ ..+-+.|.+++++|+=. +......++|+- +-.-.+ ..+.+.++.
T Consensus 42 ~~v~lypdv~~iL~~L~---~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~-~eI~~gsK~~Hf~~i~ 117 (169)
T PF12689_consen 42 EEVSLYPDVPEILQELK---ERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDY-LEIYPGSKTTHFRRIH 117 (169)
T ss_dssp -EE---TTHHHHHHHHH---HCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECE-EEESSS-HHHHHHHHH
T ss_pred CEEEeCcCHHHHHHHHH---HCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcch-hheecCchHHHHHHHH
Confidence 34788899999888887 5889999999 67889999999998765 111111122222 112223 334455555
Q ss_pred cCCCCCCcEEEEEcCCc
Q 002970 238 QDGTCHPKMALVIDDRL 254 (862)
Q Consensus 238 p~~~~~~~~vVIIDDR~ 254 (862)
...+...+-++++||..
T Consensus 118 ~~tgI~y~eMlFFDDe~ 134 (169)
T PF12689_consen 118 RKTGIPYEEMLFFDDES 134 (169)
T ss_dssp HHH---GGGEEEEES-H
T ss_pred HhcCCChhHEEEecCch
Confidence 43334556789999964
No 115
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=90.53 E-value=0.52 Score=54.19 Aligned_cols=78 Identities=15% Similarity=0.296 Sum_probs=55.9
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCCC--cc--chhhhccCC
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGS--RK--SLFNVFQDG 240 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~~--~K--sL~~lfp~~ 240 (862)
+++.||+.+++.+|+ ++-+.+.|.|++.+.|+..+++. ++...+|+.|+|.++.. .| -+......
T Consensus 329 ~~l~pG~~e~L~~Lk---~~g~~l~IvS~~~~~~~~~~l~~-------~~l~~~f~~i~~~d~v~~~~kP~~~~~al~~- 397 (459)
T PRK06698 329 GALYPNVKEIFTYIK---ENNCSIYIASNGLTEYLRAIVSY-------YDLDQWVTETFSIEQINSLNKSDLVKSILNK- 397 (459)
T ss_pred CCcCCCHHHHHHHHH---HCCCeEEEEeCCchHHHHHHHHH-------CCcHhhcceeEecCCCCCCCCcHHHHHHHHh-
Confidence 678899999999997 56799999999999999999988 44455666888875431 11 12222211
Q ss_pred CCCCcEEEEEcCCc
Q 002970 241 TCHPKMALVIDDRL 254 (862)
Q Consensus 241 ~~~~~~vVIIDDR~ 254 (862)
..++-+|+|.|+.
T Consensus 398 -l~~~~~v~VGDs~ 410 (459)
T PRK06698 398 -YDIKEAAVVGDRL 410 (459)
T ss_pred -cCcceEEEEeCCH
Confidence 2345688888875
No 116
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=90.30 E-value=0.34 Score=47.37 Aligned_cols=78 Identities=18% Similarity=0.210 Sum_probs=51.1
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-Ccc----chhhhccC
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQD 239 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~-~~K----sL~~lfp~ 239 (862)
+++.||+.+++++|+ ...|.+.|.|++ .++..+++. ++...+++-|++.++. ..| .+..+...
T Consensus 87 ~~~~~g~~~~l~~l~---~~g~~i~i~S~~--~~~~~~l~~-------~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~ 154 (185)
T TIGR02009 87 AEVLPGIENFLKRLK---KKGIAVGLGSSS--KNADRILAK-------LGLTDYFDAIVDADEVKEGKPHPETFLLAAEL 154 (185)
T ss_pred CCCCcCHHHHHHHHH---HcCCeEEEEeCc--hhHHHHHHH-------cChHHHCCEeeehhhCCCCCCChHHHHHHHHH
Confidence 578899999888886 457899999998 777777776 4444555677775432 111 12222221
Q ss_pred CCCCCcEEEEEcCCc
Q 002970 240 GTCHPKMALVIDDRL 254 (862)
Q Consensus 240 ~~~~~~~vVIIDDR~ 254 (862)
....++-+|+|+|+.
T Consensus 155 ~~~~~~~~v~IgD~~ 169 (185)
T TIGR02009 155 LGVSPNECVVFEDAL 169 (185)
T ss_pred cCCCHHHeEEEeCcH
Confidence 124567788899984
No 117
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=89.50 E-value=0.66 Score=49.13 Aligned_cols=81 Identities=11% Similarity=0.056 Sum_probs=53.8
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-Ccc----chhhhccC
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQD 239 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~-~~K----sL~~lfp~ 239 (862)
+++-||+.+++.+|+ ++-|.+.|.|++.+.++..+++.+.=.+ +|- +.|+|.++. ..| -+..++..
T Consensus 100 ~~~~pg~~elL~~L~---~~g~~l~I~T~~~~~~~~~~l~~~~l~~-~~~-----d~i~~~~~~~~~KP~p~~~~~a~~~ 170 (267)
T PRK13478 100 ATPIPGVLEVIAALR---ARGIKIGSTTGYTREMMDVVVPLAAAQG-YRP-----DHVVTTDDVPAGRPYPWMALKNAIE 170 (267)
T ss_pred CCCCCCHHHHHHHHH---HCCCEEEEEcCCcHHHHHHHHHHHhhcC-CCc-----eEEEcCCcCCCCCCChHHHHHHHHH
Confidence 466799999988887 5679999999999999999988743222 222 578777542 122 12222221
Q ss_pred CCCC-CcEEEEEcCCc
Q 002970 240 GTCH-PKMALVIDDRL 254 (862)
Q Consensus 240 ~~~~-~~~vVIIDDR~ 254 (862)
.... ++-+|+|+|+.
T Consensus 171 l~~~~~~e~l~IGDs~ 186 (267)
T PRK13478 171 LGVYDVAACVKVDDTV 186 (267)
T ss_pred cCCCCCcceEEEcCcH
Confidence 1133 47799999986
No 118
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=89.29 E-value=0.82 Score=50.51 Aligned_cols=102 Identities=19% Similarity=0.260 Sum_probs=61.9
Q ss_pred cChHHHHHHHhhhccccE-EEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCCCccchhhhccCCCCCCcEE
Q 002970 169 PAWEDLRSYLTARGRKRF-EVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMA 247 (862)
Q Consensus 169 Pgv~eLr~FL~a~~sk~F-El~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~~~KsL~~lfp~~~~~~~~v 247 (862)
|.+.+ .|. +..+.+ -|+++.-|+++|+...++.+ +.+++|+=|||...... ....-
T Consensus 145 ~~v~~---sL~-~Lk~~g~vLvLWSyG~~eHV~~sl~~~-------~L~~~Fd~ii~~G~~~~------------~~~~~ 201 (297)
T PF05152_consen 145 PAVYD---SLR-ELKEQGCVLVLWSYGNREHVRHSLKEL-------KLEGYFDIIICGGNKAG------------EYNSR 201 (297)
T ss_pred hHHHH---HHH-HHHHcCCEEEEecCCCHHHHHHHHHHh-------CCccccEEEEeCCccCC------------cCCcc
Confidence 45555 444 444444 99999999999999999995 44456678999743321 11222
Q ss_pred EEEcCCcccCCCCCCCCeEEecccccccCchhhhc--cccchHHHHHHHHhhhcccchhcc
Q 002970 248 LVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEAN--NAIPVLCVARNIACNVRGGFFKEF 306 (862)
Q Consensus 248 VIIDDR~dVW~~~~~~~v~vV~~Y~pf~~~q~e~~--~~~p~L~~a~~vl~~Vh~~FF~~~ 306 (862)
+++|...+ .+.+.. ||+....... -+.| -+++..|.+.-=.|||.+
T Consensus 202 ~~~d~~~~--------~~f~~~---~FylDv~~~~~LPKSP--rVVL~yL~k~gvny~Kti 249 (297)
T PF05152_consen 202 VIVDRQYK--------VIFVSK---PFYLDVTNVNNLPKSP--RVVLWYLRKKGVNYFKTI 249 (297)
T ss_pred ceeecccc--------eEEecc---ceEEeCCcCCCCCCCC--eehHHHHHHcCCceeeeE
Confidence 56666532 233333 3444432221 2233 558888888777899865
No 119
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=89.22 E-value=0.59 Score=49.31 Aligned_cols=84 Identities=13% Similarity=0.115 Sum_probs=53.2
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCC--CCCccccccccCeEEeccCCCccchhhhccCCCC
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDP--ESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTC 242 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP--~g~lFg~~~l~~RIisres~~~KsL~~lfp~~~~ 242 (862)
.++.|++.++++.|+ ++-|.++|||+|.+.+...+.+.++- =..+|. .+++-+++.+.. ...+..++.....
T Consensus 94 ~~lypgv~e~L~~Lk---~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~--~~fd~~~g~KP~-p~~y~~i~~~lgv 167 (220)
T TIGR01691 94 SHLYPDVPPALEAWL---QLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFS--GYFDTTVGLKTE-AQSYVKIAGQLGS 167 (220)
T ss_pred cCcCcCHHHHHHHHH---HCCCEEEEEeCCCHHHHHHHHhhccccchhhhcc--eEEEeCcccCCC-HHHHHHHHHHhCc
Confidence 567899999777776 56799999999999999888876531 112343 222333343322 1223333322225
Q ss_pred CCcEEEEEcCCc
Q 002970 243 HPKMALVIDDRL 254 (862)
Q Consensus 243 ~~~~vVIIDDR~ 254 (862)
.++-+++|+|+.
T Consensus 168 ~p~e~lfVgDs~ 179 (220)
T TIGR01691 168 PPREILFLSDII 179 (220)
T ss_pred ChhHEEEEeCCH
Confidence 678899999985
No 120
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=88.71 E-value=2.6 Score=45.24 Aligned_cols=95 Identities=12% Similarity=0.040 Sum_probs=54.0
Q ss_pred cChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEecc-CCCc------cc--hhhhccC
Q 002970 169 PAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVK-SGSR------KS--LFNVFQD 239 (862)
Q Consensus 169 Pgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisre-s~~~------Ks--L~~lfp~ 239 (862)
|++.+|.++|. ++-++++++|.=.........+-|.-.| |. + .++++-|. ++.. |+ ...+-.
T Consensus 123 p~al~l~~~l~---~~G~~Vf~lTGR~e~~r~~T~~nL~~~G--~~--~-~~~LiLR~~~d~~~~~~~yKs~~R~~l~~- 193 (229)
T TIGR01675 123 PEGLKLYQKII---ELGIKIFLLSGRWEELRNATLDNLINAG--FT--G-WKHLILRGLEDSNKTVVTYKSEVRKSLME- 193 (229)
T ss_pred HHHHHHHHHHH---HCCCEEEEEcCCChHHHHHHHHHHHHcC--CC--C-cCeeeecCCCCCCchHhHHHHHHHHHHHh-
Confidence 67777666665 7788999999887766555555554344 22 1 15777774 2222 22 222332
Q ss_pred CCCCCcEEEEEcCCcccCCCCCC-CCeEEecccccc
Q 002970 240 GTCHPKMALVIDDRLKVWDDKDQ-PRVHVVPAFAPY 274 (862)
Q Consensus 240 ~~~~~~~vVIIDDR~dVW~~~~~-~~v~vV~~Y~pf 274 (862)
..-+.+.+|||...=-..... .+....|-.+||
T Consensus 194 --~GYrIv~~iGDq~sDl~G~~~~~RtFKLPNPmYy 227 (229)
T TIGR01675 194 --EGYRIWGNIGDQWSDLLGSPPGRRTFKLPNPMYY 227 (229)
T ss_pred --CCceEEEEECCChHHhcCCCccCceeeCCCCccc
Confidence 134788999998432232222 256566666665
No 121
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=87.90 E-value=1.2 Score=43.60 Aligned_cols=38 Identities=13% Similarity=0.106 Sum_probs=29.6
Q ss_pred cChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCC
Q 002970 169 PAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPE 209 (862)
Q Consensus 169 Pgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~ 209 (862)
|.+.+++..|+ +.-++++|.|.|.+.|+..+++.+.=+
T Consensus 92 ~~~~e~i~~~~---~~~~~v~IvS~~~~~~i~~~~~~~~i~ 129 (192)
T PF12710_consen 92 PDAMELIRELK---DNGIKVVIVSGSPDEIIEPIAERLGID 129 (192)
T ss_dssp TTHHHHHHHHH---HTTSEEEEEEEEEHHHHHHHHHHTTSS
T ss_pred hhHHHHHHHHH---HCCCEEEEECCCcHHHHHHHHHHcCCC
Confidence 34448665555 668999999999999999999876533
No 122
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=86.98 E-value=1.2 Score=44.62 Aligned_cols=79 Identities=16% Similarity=0.215 Sum_probs=51.2
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCC---------------cHHHHHHHHHhhCCCCCccccccccCeEEe----c
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMA---------------ERDYALEMWRLLDPESNLINTKELLDRIVC----V 225 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG---------------~R~YA~~I~rlLDP~g~lFg~~~l~~RIis----r 225 (862)
+++-||+.++++.|+ .+-|.++|.||. .+.|+..+++.++-. |. +-++| .
T Consensus 28 ~~~~pgv~e~L~~L~---~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~---fd-----~ii~~~~~~~ 96 (161)
T TIGR01261 28 LRFEKGVIPALLKLK---KAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII---FD-----DVLICPHFPD 96 (161)
T ss_pred eeECCCHHHHHHHHH---HCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc---ee-----EEEECCCCCC
Confidence 567799999888886 567999999996 356777777765543 44 34555 2
Q ss_pred cC-CC----ccchhhhccCCCCCCcEEEEEcCCc
Q 002970 226 KS-GS----RKSLFNVFQDGTCHPKMALVIDDRL 254 (862)
Q Consensus 226 es-~~----~KsL~~lfp~~~~~~~~vVIIDDR~ 254 (862)
++ +. ...+..++....++++-+++|+|+.
T Consensus 97 ~~~~~~KP~~~~~~~~~~~~~~~~~e~l~IGD~~ 130 (161)
T TIGR01261 97 DNCDCRKPKIKLLEPYLKKNLIDKARSYVIGDRE 130 (161)
T ss_pred CCCCCCCCCHHHHHHHHHHcCCCHHHeEEEeCCH
Confidence 22 11 1223444333335678899999983
No 123
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=86.79 E-value=0.91 Score=49.21 Aligned_cols=95 Identities=15% Similarity=0.140 Sum_probs=57.6
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccC-CCcc----chhhhccC
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRK----SLFNVFQD 239 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres-~~~K----sL~~lfp~ 239 (862)
+++.||+.+++.+|+ .+.|.|.|.|++.+.++..+++.+.= -.+|. .++ +++.++ +..| -+..++..
T Consensus 143 ~~l~pGv~elL~~L~---~~g~~l~IvTn~~~~~~~~~l~~~~~-~~~~~---~~~-~v~~~~~~~~KP~p~~~~~a~~~ 214 (286)
T PLN02779 143 LPLRPGVLRLMDEAL---AAGIKVAVCSTSNEKAVSKIVNTLLG-PERAQ---GLD-VFAGDDVPKKKPDPDIYNLAAET 214 (286)
T ss_pred CCchhhHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHhcc-ccccC---ceE-EEeccccCCCCCCHHHHHHHHHH
Confidence 578899999888887 56799999999999999998886521 12333 112 333322 1112 22222221
Q ss_pred CCCCCcEEEEEcCCcccCCCCCCCCeEE
Q 002970 240 GTCHPKMALVIDDRLKVWDDKDQPRVHV 267 (862)
Q Consensus 240 ~~~~~~~vVIIDDR~dVW~~~~~~~v~v 267 (862)
....++-+|+|+|+..=+.......+.+
T Consensus 215 ~~~~p~~~l~IGDs~~Di~aA~~aG~~~ 242 (286)
T PLN02779 215 LGVDPSRCVVVEDSVIGLQAAKAAGMRC 242 (286)
T ss_pred hCcChHHEEEEeCCHHhHHHHHHcCCEE
Confidence 1256678999999975444333334443
No 124
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=86.41 E-value=3.4 Score=37.92 Aligned_cols=62 Identities=23% Similarity=0.181 Sum_probs=41.3
Q ss_pred hHHHHHHHHhcC------CCeEEEEeeecCCCceEEEEEEECCE-----EEEEeecCCHHHHHHHHHHHHHHHHHhh
Q 002970 613 SGVLQDIAMKCG------TKVEFRPALVASTELQFSIEAWFAGE-----KIGEGIGRTRREAQRQAAEGSIKHLANV 678 (862)
Q Consensus 613 KS~LQE~~QK~~------~~l~Y~~v~~~~Hdk~Ftv~V~i~G~-----~~G~G~GkSKKeAEq~AA~~AL~~L~~~ 678 (862)
.+.|+.||++.. ..+.|.+..... .|.++|.+=.. ..|. .-.|||.|++.||-.|++.|-+.
T Consensus 2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~---~~~c~v~LP~~~pi~~i~g~-~~~sk~~AK~sAAf~Ac~~L~~~ 74 (90)
T PF03368_consen 2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS---GFICTVILPINSPIRSIEGP-PMRSKKLAKRSAAFEACKKLHEA 74 (90)
T ss_dssp HHHHHHHHTTSSS-TT--SS-EEEEEE--G----EEEEEE--TT-SS--EEEE---SSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCccCCceEEEEEcCC---cEEEEEECCCCCCCCeEEcc-ccccHHHHHHHHHHHHHHHHHHc
Confidence 578999998743 246787653322 78888876542 4555 67899999999999999999764
No 125
>PF14954 LIX1: Limb expression 1
Probab=86.11 E-value=1.1 Score=47.70 Aligned_cols=74 Identities=22% Similarity=0.165 Sum_probs=50.2
Q ss_pred CCchHHHHHHhhh---cCCCceeeecCCCCCCCCCCccEEEEEEE-CCEEEee-eecCCHHHHHHHHHHHHHH-Hhhccc
Q 002970 742 MGSVSALKELCMT---EGLGVVFQQQPPSSANSVQKDEVYAQVEI-DGQVLGK-GIGSTWDEAKMQAAEKALG-SLRSMF 815 (862)
Q Consensus 742 ~N~V~lLnELcqk---eGL~~~f~~e~v~~sGp~H~keF~aqV~I-dGkvyG~-GtGsSKKeAKqqAAe~AL~-aL~~~~ 815 (862)
-|-|..|+|+=+. .|..+.-...-+-++.|+..+-|+|-|++ ||--||. -+..||.||++.||+.||- +++|..
T Consensus 21 vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs~ps~~ppyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALmNSvfNEh 100 (252)
T PF14954_consen 21 VNVVEALQEFWQMKQSRGADLKSEALVVYESVPSPSPPYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALMNSVFNEH 100 (252)
T ss_pred chHHHHHHHHHHHHHhccccCCCCCeeeeeccCCCCCCeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHHHHHHhcC
Confidence 4999999998642 23222200000112456666679999998 7777876 6789999999999999964 566654
No 126
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=85.17 E-value=1.7 Score=45.47 Aligned_cols=29 Identities=31% Similarity=0.306 Sum_probs=20.1
Q ss_pred EEEeCcchhhhhccccchHHHHHHHHhhhc
Q 002970 50 IVFDLDETLIVANTMRSFEDRIEALLRKIS 79 (862)
Q Consensus 50 lV~DLDeTLi~a~t~~~~e~ri~~l~~~~~ 79 (862)
+++||||||+.... .--+..+++++++..
T Consensus 2 i~~DlDGTLl~~~~-~i~~~~~~~i~~l~~ 30 (256)
T TIGR00099 2 IFIDLDGTLLNDDH-TISPSTKEALAKLRE 30 (256)
T ss_pred EEEeCCCCCCCCCC-ccCHHHHHHHHHHHH
Confidence 78999999997532 112556777777664
No 127
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=82.48 E-value=1.3 Score=47.77 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=31.3
Q ss_pred cChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHh
Q 002970 169 PAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRL 205 (862)
Q Consensus 169 Pgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rl 205 (862)
||+-+|.+|++ +.-. ||+.|..-++.-+-+++++.
T Consensus 87 Pgmv~lik~~a-k~g~-~eliIVSDaNsfFIe~~Lea 121 (256)
T KOG3120|consen 87 PGMVRLIKSAA-KLGC-FELIIVSDANSFFIEEILEA 121 (256)
T ss_pred ccHHHHHHHHH-hCCC-ceEEEEecCchhHHHHHHHH
Confidence 89999999998 5444 99999999999999999998
No 128
>PLN02811 hydrolase
Probab=81.12 E-value=2.3 Score=43.68 Aligned_cols=79 Identities=20% Similarity=0.130 Sum_probs=51.2
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHH-HHHhhCCCCCccccccccCeEEecc--CC-C--------ccc
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALE-MWRLLDPESNLINTKELLDRIVCVK--SG-S--------RKS 232 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~-I~rlLDP~g~lFg~~~l~~RIisre--s~-~--------~Ks 232 (862)
+++.||+.+++++|+ ..-|.+.|-|++.+.+... +.+. ++...+|+.|+|.+ +- . .+.
T Consensus 77 ~~l~~gv~e~l~~L~---~~g~~~~i~S~~~~~~~~~~~~~~-------~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a 146 (220)
T PLN02811 77 SDLMPGAERLVRHLH---AKGIPIAIATGSHKRHFDLKTQRH-------GELFSLMHHVVTGDDPEVKQGKPAPDIFLAA 146 (220)
T ss_pred CCCCccHHHHHHHHH---HCCCcEEEEeCCchhhHHHHHccc-------HHHHhhCCEEEECChhhccCCCCCcHHHHHH
Confidence 567899999888887 4579999999999876643 2221 12223556888876 21 1 123
Q ss_pred hhhhccCCCCCCcEEEEEcCCc
Q 002970 233 LFNVFQDGTCHPKMALVIDDRL 254 (862)
Q Consensus 233 L~~lfp~~~~~~~~vVIIDDR~ 254 (862)
++++- .+...++-+|+|+|+.
T Consensus 147 ~~~~~-~~~~~~~~~v~IgDs~ 167 (220)
T PLN02811 147 ARRFE-DGPVDPGKVLVFEDAP 167 (220)
T ss_pred HHHhC-CCCCCccceEEEeccH
Confidence 34332 1124577899999986
No 129
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=80.68 E-value=3 Score=40.50 Aligned_cols=40 Identities=28% Similarity=0.245 Sum_probs=31.8
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcH---------------HHHHHHHHhhC
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAER---------------DYALEMWRLLD 207 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R---------------~YA~~I~rlLD 207 (862)
+++.|++.+++.+|+ .+-|.+.|.||+.+ .++..+++.++
T Consensus 26 ~~~~~g~~~~l~~Lk---~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (147)
T TIGR01656 26 WQLRPGAVPALLTLR---AAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLG 80 (147)
T ss_pred eEEcCChHHHHHHHH---HCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCC
Confidence 467799999888887 78899999999985 56666666644
No 130
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=80.14 E-value=1.9 Score=46.19 Aligned_cols=80 Identities=14% Similarity=0.185 Sum_probs=58.1
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEecc--------CC--------
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVK--------SG-------- 228 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisre--------s~-------- 228 (862)
..+.|++.+++..|. ..-+.+.|.|+....++..+++.|+-.+.+|. .|++.+ .+
T Consensus 186 ~~~~~~~~~~l~~l~---~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~f~------~i~~~~~~~~~~~~~~~~kp~p~~ 256 (300)
T PHA02530 186 DKPNPMVVELVKMYK---AAGYEIIVVSGRDGVCEEDTVEWLRQTDIWFD------DLIGRPPDMHFQREQGDKRPDDVV 256 (300)
T ss_pred CCCChhHHHHHHHHH---hCCCEEEEEeCCChhhHHHHHHHHHHcCCchh------hhhCCcchhhhcccCCCCCCcHHH
Confidence 467899999777775 55799999999999999999999988887776 444443 11
Q ss_pred CccchhhhccCCCCCCcEEEEEcCCccc
Q 002970 229 SRKSLFNVFQDGTCHPKMALVIDDRLKV 256 (862)
Q Consensus 229 ~~KsL~~lfp~~~~~~~~vVIIDDR~dV 256 (862)
..+.|.++.. ..++-+|.|||+..+
T Consensus 257 ~~~~l~~~~~---~~~~~~~~vgD~~~d 281 (300)
T PHA02530 257 KEEIFWEKIA---PKYDVLLAVDDRDQV 281 (300)
T ss_pred HHHHHHHHhc---cCceEEEEEcCcHHH
Confidence 1233444421 145889999999765
No 131
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=79.78 E-value=1.4 Score=44.12 Aligned_cols=29 Identities=34% Similarity=0.313 Sum_probs=22.5
Q ss_pred EEEeCcchhhhhccccchHHHHHHHHhhhc
Q 002970 50 IVFDLDETLIVANTMRSFEDRIEALLRKIS 79 (862)
Q Consensus 50 lV~DLDeTLi~a~t~~~~e~ri~~l~~~~~ 79 (862)
|++||||||+.....= -+..+++|++|..
T Consensus 1 i~~DlDGTLl~~~~~i-~~~~~~al~~l~~ 29 (254)
T PF08282_consen 1 IFSDLDGTLLNSDGKI-SPETIEALKELQE 29 (254)
T ss_dssp EEEECCTTTCSTTSSS-CHHHHHHHHHHHH
T ss_pred cEEEECCceecCCCee-CHHHHHHHHhhcc
Confidence 6899999999865552 3777788888774
No 132
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=76.99 E-value=2 Score=43.64 Aligned_cols=28 Identities=39% Similarity=0.493 Sum_probs=18.2
Q ss_pred EEEeCcchhhhhccccch-HHHHHHHHhhhc
Q 002970 50 IVFDLDETLIVANTMRSF-EDRIEALLRKIS 79 (862)
Q Consensus 50 lV~DLDeTLi~a~t~~~~-e~ri~~l~~~~~ 79 (862)
|+|||||||+... +.+ +..+++|+++..
T Consensus 1 i~~DlDGTLl~~~--~~i~~~~~~al~~l~~ 29 (225)
T TIGR01482 1 IASDIDGTLTDPN--RAINESALEAIRKAES 29 (225)
T ss_pred CeEeccCccCCCC--cccCHHHHHHHHHHHH
Confidence 5899999999543 333 344566666543
No 133
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=76.42 E-value=2 Score=45.51 Aligned_cols=80 Identities=15% Similarity=0.134 Sum_probs=41.6
Q ss_pred cChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCCC--------ccc--hhhhcc
Q 002970 169 PAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGS--------RKS--LFNVFQ 238 (862)
Q Consensus 169 Pgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~~--------~Ks--L~~lfp 238 (862)
|+..+|..++. +.-++|++.|+=....-..-++-|.-.| |. . .+.++-+..+. -|+ ...|-.
T Consensus 118 p~a~~l~~~~~---~~G~~V~~iT~R~~~~r~~T~~nL~~~G--~~--~-~~~l~lr~~~~~~~~~~~~yK~~~r~~i~~ 189 (229)
T PF03767_consen 118 PGALELYNYAR---SRGVKVFFITGRPESQREATEKNLKKAG--FP--G-WDHLILRPDKDPSKKSAVEYKSERRKEIEK 189 (229)
T ss_dssp TTHHHHHHHHH---HTTEEEEEEEEEETTCHHHHHHHHHHHT--TS--T-BSCGEEEEESSTSS------SHHHHHHHHH
T ss_pred HHHHHHHHHHH---HCCCeEEEEecCCchhHHHHHHHHHHcC--CC--c-cchhccccccccccccccccchHHHHHHHH
Confidence 67778666665 6779999999855553333333333333 22 0 13444442111 122 222222
Q ss_pred CCCCCCcEEEEEcCCcccCCC
Q 002970 239 DGTCHPKMALVIDDRLKVWDD 259 (862)
Q Consensus 239 ~~~~~~~~vVIIDDR~dVW~~ 259 (862)
..-+.++.|+|..+=+..
T Consensus 190 ---~Gy~Ii~~iGD~~~D~~~ 207 (229)
T PF03767_consen 190 ---KGYRIIANIGDQLSDFSG 207 (229)
T ss_dssp ---TTEEEEEEEESSGGGCHC
T ss_pred ---cCCcEEEEeCCCHHHhhc
Confidence 123688889988665544
No 134
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=76.39 E-value=1.1 Score=46.86 Aligned_cols=14 Identities=50% Similarity=0.520 Sum_probs=12.5
Q ss_pred ceeEEEeCcchhhh
Q 002970 47 CLGIVFDLDETLIV 60 (862)
Q Consensus 47 ~L~lV~DLDeTLi~ 60 (862)
++.|+.||||||+.
T Consensus 1 ~~li~tDlDGTLl~ 14 (249)
T TIGR01485 1 RLLLVSDLDNTLVD 14 (249)
T ss_pred CeEEEEcCCCcCcC
Confidence 47899999999996
No 135
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=74.07 E-value=26 Score=37.58 Aligned_cols=42 Identities=21% Similarity=0.190 Sum_probs=36.6
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCC
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPE 209 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~ 209 (862)
.+|-||++||-++|. .+--.+|+-.-|=|..|.-|...|+=+
T Consensus 87 ~~lT~Gi~eLv~~L~---~~~~~v~liSGGF~~~i~~Va~~Lgi~ 128 (227)
T KOG1615|consen 87 PTLTPGIRELVSRLH---ARGTQVYLISGGFRQLIEPVAEQLGIP 128 (227)
T ss_pred CccCCCHHHHHHHHH---HcCCeEEEEcCChHHHHHHHHHHhCCc
Confidence 356699999999998 566789999999999999999999844
No 136
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=73.49 E-value=7.3 Score=39.21 Aligned_cols=79 Identities=11% Similarity=0.091 Sum_probs=46.3
Q ss_pred eCcChHHHHHHHhhhccccEEEEEEeCCcHH---------HHHHHHHhhCCCCCccccccccCeEEeccCC-Cc----cc
Q 002970 167 LRPAWEDLRSYLTARGRKRFEVYVCTMAERD---------YALEMWRLLDPESNLINTKELLDRIVCVKSG-SR----KS 232 (862)
Q Consensus 167 LRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~---------YA~~I~rlLDP~g~lFg~~~l~~RIisres~-~~----Ks 232 (862)
+-||+.+++..|+ .+-|.+.|.|++... +...|.++|+--|..+ .-+++-+.. .. ..
T Consensus 43 ~~pgv~e~L~~Lk---~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~~------~~ii~~~~~~~~KP~p~~ 113 (166)
T TIGR01664 43 LYPEIPAKLQELD---DEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVPI------QVLAATHAGLYRKPMTGM 113 (166)
T ss_pred ecCCHHHHHHHHH---HCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCCE------EEEEecCCCCCCCCccHH
Confidence 4599999888776 678999999998874 3233334444333222 234443222 11 23
Q ss_pred hhhhccCCC--CCCcEEEEEcCCc
Q 002970 233 LFNVFQDGT--CHPKMALVIDDRL 254 (862)
Q Consensus 233 L~~lfp~~~--~~~~~vVIIDDR~ 254 (862)
+..+..... ++++-+++|+|+.
T Consensus 114 ~~~~~~~~~~~~~~~~~v~VGD~~ 137 (166)
T TIGR01664 114 WEYLQSQYNSPIKMTRSFYVGDAA 137 (166)
T ss_pred HHHHHHHcCCCCCchhcEEEECCC
Confidence 333333222 5677899999985
No 137
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=72.55 E-value=3.7 Score=43.10 Aligned_cols=28 Identities=36% Similarity=0.356 Sum_probs=19.9
Q ss_pred ceeEEEeCcchhhhhccccchHHHHHHHH
Q 002970 47 CLGIVFDLDETLIVANTMRSFEDRIEALL 75 (862)
Q Consensus 47 ~L~lV~DLDeTLi~a~t~~~~e~ri~~l~ 75 (862)
.-.|++||||||+..+.. --+..+++|+
T Consensus 3 ~kli~~DlDGTLl~~~~~-i~~~~~~al~ 30 (264)
T COG0561 3 IKLLAFDLDGTLLDSNKT-ISPETKEALA 30 (264)
T ss_pred eeEEEEcCCCCccCCCCc-cCHHHHHHHH
Confidence 347899999999988754 2355555555
No 138
>PTZ00174 phosphomannomutase; Provisional
Probab=70.13 E-value=5.8 Score=41.88 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=20.6
Q ss_pred ceeEEEeCcchhhhhccccch-HHHHHHHHhhhc
Q 002970 47 CLGIVFDLDETLIVANTMRSF-EDRIEALLRKIS 79 (862)
Q Consensus 47 ~L~lV~DLDeTLi~a~t~~~~-e~ri~~l~~~~~ 79 (862)
.-.|++||||||+... +.+ +..+++++++..
T Consensus 5 ~klia~DlDGTLL~~~--~~is~~~~~ai~~l~~ 36 (247)
T PTZ00174 5 KTILLFDVDGTLTKPR--NPITQEMKDTLAKLKS 36 (247)
T ss_pred CeEEEEECcCCCcCCC--CCCCHHHHHHHHHHHH
Confidence 4568999999999654 222 345666766543
No 139
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=69.48 E-value=6.4 Score=39.42 Aligned_cols=82 Identities=17% Similarity=0.144 Sum_probs=50.4
Q ss_pred eeCcChHHHHHHHhhhccccEEEEEEeCCc-HHHHHHHHHhhCCCCCccccccccCeEEeccCCCccchhhhccCCCCCC
Q 002970 166 RLRPAWEDLRSYLTARGRKRFEVYVCTMAE-RDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHP 244 (862)
Q Consensus 166 KLRPgv~eLr~FL~a~~sk~FEl~VyTmG~-R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~~~KsL~~lfp~~~~~~ 244 (862)
++-|++.+++++|+ ..-+.++|.||+. +..+..+++.++-.- +++ +.+. ...-+..++......+
T Consensus 43 ~~~pgv~e~L~~Lk---~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~-~~~---------~~KP-~p~~~~~~l~~~~~~~ 108 (170)
T TIGR01668 43 EAYPALRDWIEELK---AAGRKLLIVSNNAGEQRAKAVEKALGIPV-LPH---------AVKP-PGCAFRRAHPEMGLTS 108 (170)
T ss_pred CcChhHHHHHHHHH---HcCCEEEEEeCCchHHHHHHHHHHcCCEE-EcC---------CCCC-ChHHHHHHHHHcCCCH
Confidence 44589999777775 3448999999999 788888877654210 111 1122 1122333333222556
Q ss_pred cEEEEEcCCc--ccCCCCC
Q 002970 245 KMALVIDDRL--KVWDDKD 261 (862)
Q Consensus 245 ~~vVIIDDR~--dVW~~~~ 261 (862)
+-+++|+|+. |+-..+.
T Consensus 109 ~~~l~IGDs~~~Di~aA~~ 127 (170)
T TIGR01668 109 EQVAVVGDRLFTDVMGGNR 127 (170)
T ss_pred HHEEEECCcchHHHHHHHH
Confidence 7899999995 7876653
No 140
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=69.06 E-value=4.4 Score=45.27 Aligned_cols=66 Identities=18% Similarity=0.164 Sum_probs=38.2
Q ss_pred eEEEeCcchhhhhccccchHHHHHHHHhhhccCCChhhh--hhhHHHHHHhhhhHHHHHHHhhcCccccCCeEEE
Q 002970 49 GIVFDLDETLIVANTMRSFEDRIEALLRKISTEVDPQRI--AGMQAEVKRYQDDKNILKQYAENDQVNENGKVIK 121 (862)
Q Consensus 49 ~lV~DLDeTLi~a~t~~~~e~ri~~l~~~~~~~~dp~~~--~~~~~e~kr~~~d~~lL~q~~~~d~v~~ng~~~~ 121 (862)
.|++||||||+...+- ..+..+++|++.... .-|--+ .....|++.+..... .+.-.+..||-.|.
T Consensus 3 LIftDLDGTLLd~~~~-~~~~a~~aL~~Lk~~-GI~vVlaTGRt~~ev~~l~~~Lg-----l~~p~I~eNGA~I~ 70 (302)
T PRK12702 3 LVLSSLDGSLLDLEFN-SYGAARQALAALERR-SIPLVLYSLRTRAQLEHLCRQLR-----LEHPFICEDGSAIY 70 (302)
T ss_pred EEEEeCCCCCcCCCCc-CCHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHhC-----CCCeEEEeCCcEEE
Confidence 5788999999987654 467777777655432 222111 124556666654322 12235777886554
No 141
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=68.35 E-value=3.7 Score=43.03 Aligned_cols=29 Identities=31% Similarity=0.155 Sum_probs=21.3
Q ss_pred eEEEeCcchhhhhccccchHHHHHHHHhhhc
Q 002970 49 GIVFDLDETLIVANTMRSFEDRIEALLRKIS 79 (862)
Q Consensus 49 ~lV~DLDeTLi~a~t~~~~e~ri~~l~~~~~ 79 (862)
.++|||||||+.... ..+..+++++++..
T Consensus 1 li~~DlDGTLl~~~~--~~~~~~~ai~~l~~ 29 (225)
T TIGR02461 1 VIFTDLDGTLLPPGY--EPGPAREALEELKD 29 (225)
T ss_pred CEEEeCCCCCcCCCC--CchHHHHHHHHHHH
Confidence 378999999998544 35567788776654
No 142
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=67.82 E-value=3.8 Score=43.65 Aligned_cols=32 Identities=31% Similarity=0.259 Sum_probs=22.4
Q ss_pred ceeEEEeCcchhhhhccccchHHHHHHHHhhhc
Q 002970 47 CLGIVFDLDETLIVANTMRSFEDRIEALLRKIS 79 (862)
Q Consensus 47 ~L~lV~DLDeTLi~a~t~~~~e~ri~~l~~~~~ 79 (862)
...|++||||||+..... .-+..++++++...
T Consensus 7 ~~lI~~DlDGTLL~~~~~-i~~~~~~ai~~l~~ 38 (271)
T PRK03669 7 PLLIFTDLDGTLLDSHTY-DWQPAAPWLTRLRE 38 (271)
T ss_pred CeEEEEeCccCCcCCCCc-CcHHHHHHHHHHHH
Confidence 467889999999975422 23667777776543
No 143
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=67.73 E-value=4.3 Score=41.44 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=19.6
Q ss_pred eEEEeCcchhhhhccccch-HHHHHHHHhhh
Q 002970 49 GIVFDLDETLIVANTMRSF-EDRIEALLRKI 78 (862)
Q Consensus 49 ~lV~DLDeTLi~a~t~~~~-e~ri~~l~~~~ 78 (862)
.|++||||||+... +.+ +..+++|+++.
T Consensus 5 li~~DlDGTLl~~~--~~i~~~~~~al~~l~ 33 (230)
T PRK01158 5 AIAIDIDGTITDKD--RRLSLKAVEAIRKAE 33 (230)
T ss_pred EEEEecCCCcCCCC--CccCHHHHHHHHHHH
Confidence 57899999999543 323 56667777665
No 144
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=66.48 E-value=8 Score=40.56 Aligned_cols=80 Identities=9% Similarity=0.053 Sum_probs=45.8
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHH--HHHHhhCCCCCccccccccCeEEeccCCCccchhhhccCCCC
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYAL--EMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTC 242 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~--~I~rlLDP~g~lFg~~~l~~RIisres~~~KsL~~lfp~~~~ 242 (862)
.++-||+.|++..|+ +.-+.++|.||++|..+. +.++-+.-+.. .++-|++-.......|.........
T Consensus 23 ~~~~pga~e~L~~L~---~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~------~~~~Ii~s~~~~~~~l~~~~~~~~~ 93 (242)
T TIGR01459 23 NHTYPGAVQNLNKII---AQGKPVYFVSNSPRNIFSLHKTLKSLGINAD------LPEMIISSGEIAVQMILESKKRFDI 93 (242)
T ss_pred CccCccHHHHHHHHH---HCCCEEEEEeCCCCChHHHHHHHHHCCCCcc------ccceEEccHHHHHHHHHhhhhhccC
Confidence 345699999888886 567899999999998776 44454332210 3457777543212223332221112
Q ss_pred CCcEEEEEcCC
Q 002970 243 HPKMALVIDDR 253 (862)
Q Consensus 243 ~~~~vVIIDDR 253 (862)
.++-+++|.|+
T Consensus 94 ~~~~~~~vGd~ 104 (242)
T TIGR01459 94 RNGIIYLLGHL 104 (242)
T ss_pred CCceEEEeCCc
Confidence 33445555554
No 145
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=66.23 E-value=8.6 Score=42.46 Aligned_cols=38 Identities=18% Similarity=0.307 Sum_probs=33.5
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHh
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRL 205 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rl 205 (862)
+++|||+.+|+.+|+ ..-..+.|.|.|-+.++..+++.
T Consensus 120 l~l~pG~~efl~~L~---~~GIpv~IvS~G~~~~Ie~vL~~ 157 (277)
T TIGR01544 120 VMLKDGYENFFDKLQ---QHSIPVFIFSAGIGNVLEEVLRQ 157 (277)
T ss_pred CccCcCHHHHHHHHH---HCCCcEEEEeCCcHHHHHHHHHH
Confidence 678999999777776 55689999999999999999995
No 146
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=65.38 E-value=42 Score=36.35 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=18.7
Q ss_pred cchhhhccCCCCCCcEEEEEcCCcc
Q 002970 231 KSLFNVFQDGTCHPKMALVIDDRLK 255 (862)
Q Consensus 231 KsL~~lfp~~~~~~~~vVIIDDR~d 255 (862)
..|..+|......++-+|+|||+.+
T Consensus 165 ~~L~~fL~~~~~~pk~IIfIDD~~~ 189 (252)
T PF11019_consen 165 EVLKYFLDKINQSPKKIIFIDDNKE 189 (252)
T ss_pred HHHHHHHHHcCCCCCeEEEEeCCHH
Confidence 4566666655568899999999864
No 147
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=64.58 E-value=8.7 Score=43.59 Aligned_cols=60 Identities=17% Similarity=0.180 Sum_probs=43.9
Q ss_pred EEEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhh-CCCCCccccccccCeEEec
Q 002970 163 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLL-DPESNLINTKELLDRIVCV 225 (862)
Q Consensus 163 ~~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlL-DP~g~lFg~~~l~~RIisr 225 (862)
-||+.-|++.+++..|+ +.-..+.|.||+.+.|++.+++.| ++....=+-.++|+-||+-
T Consensus 181 ~yv~~~pgl~elL~~Lr---~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~ 241 (343)
T TIGR02244 181 KYVLRDPKLPLFLSKLK---EHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFDVVIVD 241 (343)
T ss_pred HHhccchhHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCcEEEeC
Confidence 46888999999888886 456788899999999999999996 6322111123455677764
No 148
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=64.36 E-value=19 Score=35.92 Aligned_cols=29 Identities=10% Similarity=0.052 Sum_probs=24.5
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcH
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAER 196 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R 196 (862)
+++-||+.+++..|+ ++-|.|.|.||..+
T Consensus 25 ~~~~pgv~e~L~~Lk---~~G~~l~i~TN~~~ 53 (176)
T TIGR00213 25 FEFIDGVIDALRELK---KMGYALVLVTNQSG 53 (176)
T ss_pred eEECCCHHHHHHHHH---HCCCEEEEEeCCcc
Confidence 566799999888886 56799999999985
No 149
>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]
Probab=64.18 E-value=5.1 Score=48.92 Aligned_cols=62 Identities=15% Similarity=0.006 Sum_probs=50.2
Q ss_pred CCCchHHHHHHHHhcCCCeEEEEeeec---CCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 002970 609 TETPSGVLQDIAMKCGTKVEFRPALVA---STELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHL 675 (862)
Q Consensus 609 ~~n~KS~LQE~~QK~~~~l~Y~~v~~~---~Hdk~Ftv~V~i~G~~~G~G~GkSKKeAEq~AA~~AL~~L 675 (862)
.++..-.|.|- ....+|++..++ +|+++|...|.+.|+++ .|.|-.||-|..-||-.|++.+
T Consensus 505 lK~vsd~L~Ek----~rg~k~El~set~~gs~~~R~v~gV~rvG~~a-kG~~~~gd~a~~~a~Lca~~pt 569 (816)
T KOG3792|consen 505 LKLVSDELAEK----RRGDKYELPSETGTGSHDKRFVKGVMRVGILA-KGLLLNGDRAVELALLCAEKPT 569 (816)
T ss_pred hcchhHHHhhh----ccccceecccccCCCCCCceeeeeeeeeehhh-ccccccchHHHHHHHHhccCcc
Confidence 34456666663 445678887664 59999999999999997 9999999999999998887766
No 150
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=63.94 E-value=5.6 Score=41.80 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=20.1
Q ss_pred eEEEeCcchhhhhccccch-HHHHHHHHhhhc
Q 002970 49 GIVFDLDETLIVANTMRSF-EDRIEALLRKIS 79 (862)
Q Consensus 49 ~lV~DLDeTLi~a~t~~~~-e~ri~~l~~~~~ 79 (862)
.|++||||||+... +.+ +..+++++++..
T Consensus 5 li~~DlDGTLl~~~--~~i~~~~~~ai~~l~~ 34 (270)
T PRK10513 5 LIAIDMDGTLLLPD--HTISPAVKQAIAAARA 34 (270)
T ss_pred EEEEecCCcCcCCC--CccCHHHHHHHHHHHH
Confidence 57899999999653 223 566777776543
No 151
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=63.82 E-value=5.8 Score=38.00 Aligned_cols=14 Identities=57% Similarity=0.750 Sum_probs=12.4
Q ss_pred eEEEeCcchhhhhc
Q 002970 49 GIVFDLDETLIVAN 62 (862)
Q Consensus 49 ~lV~DLDeTLi~a~ 62 (862)
.||||||+||+..+
T Consensus 2 li~~DlD~Tl~~~~ 15 (128)
T TIGR01681 2 VIVFDLDNTLWTGE 15 (128)
T ss_pred EEEEeCCCCCCCCC
Confidence 48999999999885
No 152
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=63.79 E-value=5.9 Score=38.88 Aligned_cols=13 Identities=38% Similarity=0.723 Sum_probs=11.3
Q ss_pred eEEEeCcchhhhh
Q 002970 49 GIVFDLDETLIVA 61 (862)
Q Consensus 49 ~lV~DLDeTLi~a 61 (862)
.+||||||||+..
T Consensus 3 ~i~~DiDGTL~~~ 15 (126)
T TIGR01689 3 RLVMDLDNTITLT 15 (126)
T ss_pred EEEEeCCCCcccC
Confidence 6899999999854
No 153
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=63.67 E-value=7.9 Score=38.95 Aligned_cols=13 Identities=54% Similarity=0.846 Sum_probs=11.2
Q ss_pred EEEeCcchhhhhc
Q 002970 50 IVFDLDETLIVAN 62 (862)
Q Consensus 50 lV~DLDeTLi~a~ 62 (862)
|++||||||+...
T Consensus 2 i~~D~DgTL~~~~ 14 (204)
T TIGR01484 2 LFFDLDGTLLDPN 14 (204)
T ss_pred EEEeCcCCCcCCC
Confidence 7899999999754
No 154
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=63.32 E-value=20 Score=35.77 Aligned_cols=29 Identities=17% Similarity=0.071 Sum_probs=23.7
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcH
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAER 196 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R 196 (862)
+++.||+.++++.|+ .+-|.+.|.||+++
T Consensus 28 ~~~~pgv~e~L~~Lk---~~g~~l~I~Tn~~~ 56 (181)
T PRK08942 28 WIPIPGSIEAIARLK---QAGYRVVVATNQSG 56 (181)
T ss_pred eEECCCHHHHHHHHH---HCCCEEEEEeCCcc
Confidence 456799999888886 45699999999974
No 155
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=62.09 E-value=5.8 Score=43.84 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=13.4
Q ss_pred ccceeEEEeCcchhh
Q 002970 45 LRCLGIVFDLDETLI 59 (862)
Q Consensus 45 ~r~L~lV~DLDeTLi 59 (862)
..+.++|||+|||+|
T Consensus 99 ~~~dA~V~DIDET~L 113 (275)
T TIGR01680 99 HEKDTFLFNIDGTAL 113 (275)
T ss_pred CCCCEEEEECccccc
Confidence 356999999999999
No 156
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=61.71 E-value=13 Score=42.29 Aligned_cols=79 Identities=14% Similarity=0.280 Sum_probs=47.2
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCC---------------cHHHHHHHHHhhCCCCCccccccccCeEEec----
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMA---------------ERDYALEMWRLLDPESNLINTKELLDRIVCV---- 225 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG---------------~R~YA~~I~rlLDP~g~lFg~~~l~~RIisr---- 225 (862)
+++.|++.+++.+|+ .+-|.+.|.||+ .+.++..+++. .+.+|. .-++|-
T Consensus 29 ~~l~pGV~e~L~~Lk---~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~---~gl~fd-----~i~i~~~~~s 97 (354)
T PRK05446 29 LAFEPGVIPALLKLQ---KAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFES---QGIKFD-----EVLICPHFPE 97 (354)
T ss_pred ceECcCHHHHHHHHH---hCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHH---cCCcee-----eEEEeCCcCc
Confidence 788899999777776 677999999994 24444444444 343343 233442
Q ss_pred cC-CCcc----chhhhccCCCCCCcEEEEEcCCc
Q 002970 226 KS-GSRK----SLFNVFQDGTCHPKMALVIDDRL 254 (862)
Q Consensus 226 es-~~~K----sL~~lfp~~~~~~~~vVIIDDR~ 254 (862)
++ +..| -+..++.....+++-+++|.|+.
T Consensus 98 d~~~~rKP~p~~l~~a~~~l~v~~~~svmIGDs~ 131 (354)
T PRK05446 98 DNCSCRKPKTGLVEEYLAEGAIDLANSYVIGDRE 131 (354)
T ss_pred ccCCCCCCCHHHHHHHHHHcCCCcccEEEEcCCH
Confidence 11 1222 23333332235667888999984
No 157
>PF14954 LIX1: Limb expression 1
Probab=61.03 E-value=16 Score=39.32 Aligned_cols=63 Identities=24% Similarity=0.238 Sum_probs=43.7
Q ss_pred CCchHHHHHHHH-h--cCCC------eEEEEeeecCCCceEEEEEEECC-EEEEEee-cCCHHHHHHHHHHHHHHH
Q 002970 610 ETPSGVLQDIAM-K--CGTK------VEFRPALVASTELQFSIEAWFAG-EKIGEGI-GRTRREAQRQAAEGSIKH 674 (862)
Q Consensus 610 ~n~KS~LQE~~Q-K--~~~~------l~Y~~v~~~~Hdk~Ftv~V~i~G-~~~G~G~-GkSKKeAEq~AA~~AL~~ 674 (862)
-|-...|||+=| | .+.. +.|+. .++..+-|..-|.+-| -.||.=. =.||-||.+.|||.||-+
T Consensus 21 vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs--~ps~~ppyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALmN 94 (252)
T PF14954_consen 21 VNVVEALQEFWQMKQSRGADLKSEALVVYES--VPSPSPPYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALMN 94 (252)
T ss_pred chHHHHHHHHHHHHHhccccCCCCCeeeeec--cCCCCCCeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHHH
Confidence 367899999663 3 2321 46764 3667788988888765 4444322 469999999999999843
No 158
>PRK10976 putative hydrolase; Provisional
Probab=60.40 E-value=6.7 Score=41.20 Aligned_cols=30 Identities=23% Similarity=0.129 Sum_probs=20.7
Q ss_pred eEEEeCcchhhhhccccchHHHHHHHHhhhc
Q 002970 49 GIVFDLDETLIVANTMRSFEDRIEALLRKIS 79 (862)
Q Consensus 49 ~lV~DLDeTLi~a~t~~~~e~ri~~l~~~~~ 79 (862)
.+++||||||+.... .--+..+++++++..
T Consensus 4 li~~DlDGTLl~~~~-~is~~~~~ai~~l~~ 33 (266)
T PRK10976 4 VVASDLDGTLLSPDH-TLSPYAKETLKLLTA 33 (266)
T ss_pred EEEEeCCCCCcCCCC-cCCHHHHHHHHHHHH
Confidence 578999999997642 112556777777654
No 159
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=59.94 E-value=6.7 Score=41.01 Aligned_cols=30 Identities=33% Similarity=0.463 Sum_probs=20.5
Q ss_pred eEEEeCcchhhhhccccchHHHHHHHHhhhc
Q 002970 49 GIVFDLDETLIVANTMRSFEDRIEALLRKIS 79 (862)
Q Consensus 49 ~lV~DLDeTLi~a~t~~~~e~ri~~l~~~~~ 79 (862)
.|++||||||+.... .--+..+++++++..
T Consensus 5 li~~DlDGTLl~~~~-~i~~~~~~ai~~~~~ 34 (272)
T PRK10530 5 VIALDLDGTLLTPKK-TILPESLEALARARE 34 (272)
T ss_pred EEEEeCCCceECCCC-ccCHHHHHHHHHHHH
Confidence 578999999996532 123456777777654
No 160
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=59.46 E-value=15 Score=44.04 Aligned_cols=37 Identities=14% Similarity=0.069 Sum_probs=27.1
Q ss_pred CcChHHHHHHHhhhccccEEEEEEeCCcH------------HHHHHHHHhhC
Q 002970 168 RPAWEDLRSYLTARGRKRFEVYVCTMAER------------DYALEMWRLLD 207 (862)
Q Consensus 168 RPgv~eLr~FL~a~~sk~FEl~VyTmG~R------------~YA~~I~rlLD 207 (862)
-|++.+++..|. ..-|.|.|+||-.. .++..|++.|+
T Consensus 199 ~pgV~e~L~~L~---~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lg 247 (526)
T TIGR01663 199 FPEIPEKLKELE---ADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLG 247 (526)
T ss_pred ccCHHHHHHHHH---HCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcC
Confidence 388989777776 67799999999655 45666666653
No 161
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=59.44 E-value=6.9 Score=41.39 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=20.4
Q ss_pred eEEEeCcchhhhhccccchHHHHHHHHhhhc
Q 002970 49 GIVFDLDETLIVANTMRSFEDRIEALLRKIS 79 (862)
Q Consensus 49 ~lV~DLDeTLi~a~t~~~~e~ri~~l~~~~~ 79 (862)
.+++||||||+.... .--+..+++++++..
T Consensus 4 li~~DlDGTLl~~~~-~i~~~~~~ai~~l~~ 33 (272)
T PRK15126 4 LAAFDMDGTLLMPDH-HLGEKTLSTLARLRE 33 (272)
T ss_pred EEEEeCCCcCcCCCC-cCCHHHHHHHHHHHH
Confidence 578999999996542 123556677777653
No 162
>PRK06769 hypothetical protein; Validated
Probab=59.21 E-value=18 Score=36.40 Aligned_cols=29 Identities=14% Similarity=0.109 Sum_probs=23.8
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcH
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAER 196 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R 196 (862)
+.+-|++.+++.+|+ .+-|.|.|.||+..
T Consensus 27 ~~~~pgv~e~L~~Lk---~~G~~l~I~Tn~~~ 55 (173)
T PRK06769 27 FTLFPFTKASLQKLK---ANHIKIFSFTNQPG 55 (173)
T ss_pred eEECCCHHHHHHHHH---HCCCEEEEEECCch
Confidence 456799999888887 45699999999875
No 163
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=59.06 E-value=7.1 Score=39.87 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=19.2
Q ss_pred EEEeCcchhhhhccccchHHHHHHHHhhh
Q 002970 50 IVFDLDETLIVANTMRSFEDRIEALLRKI 78 (862)
Q Consensus 50 lV~DLDeTLi~a~t~~~~e~ri~~l~~~~ 78 (862)
|++||||||+..... ..+..+++|+.+.
T Consensus 2 i~~DlDGTLL~~~~~-~~~~~~~~l~~l~ 29 (221)
T TIGR02463 2 VFSDLDGTLLDSHSY-DWQPAAPWLTRLQ 29 (221)
T ss_pred EEEeCCCCCcCCCCC-CcHHHHHHHHHHH
Confidence 799999999976532 2444666666543
No 164
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=58.74 E-value=15 Score=34.50 Aligned_cols=84 Identities=15% Similarity=0.173 Sum_probs=51.7
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCc--------HHHHHHHHHhhCCCCCccccccccCeEEec---cCCCccch
Q 002970 165 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAE--------RDYALEMWRLLDPESNLINTKELLDRIVCV---KSGSRKSL 233 (862)
Q Consensus 165 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~--------R~YA~~I~rlLDP~g~lFg~~~l~~RIisr---es~~~KsL 233 (862)
.++.|++.+++.+|+ ..-|.++|.||+. +.++.++++.+.=. |- .-++|- +. ....+
T Consensus 24 ~~~~~~v~~~l~~L~---~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~---~~-----~~~~~~~~~KP-~~~~~ 91 (132)
T TIGR01662 24 RILYPEVPDALAELK---EAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP---ID-----VLYACPHCRKP-KPGMF 91 (132)
T ss_pred heeCCCHHHHHHHHH---HCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC---EE-----EEEECCCCCCC-ChHHH
Confidence 456699999888886 5679999999999 88888888876432 11 112221 11 11122
Q ss_pred hhhccCC-CCCCcEEEEEcCC--cccCCCC
Q 002970 234 FNVFQDG-TCHPKMALVIDDR--LKVWDDK 260 (862)
Q Consensus 234 ~~lfp~~-~~~~~~vVIIDDR--~dVW~~~ 260 (862)
..+.... ..+++-++.|+|+ .|+....
T Consensus 92 ~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~ 121 (132)
T TIGR01662 92 LEALKRFNEIDPEESVYVGDQDLTDLQAAK 121 (132)
T ss_pred HHHHHHcCCCChhheEEEcCCCcccHHHHH
Confidence 3333222 1467789999995 5665443
No 165
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=57.28 E-value=3.3 Score=48.05 Aligned_cols=66 Identities=24% Similarity=0.264 Sum_probs=54.9
Q ss_pred CCchHHHHHHHHhcCC-CeEEEEeeecCCCceEEEEEEECCEEEEEeec-CCHHHHHHHHHHHHHHHHHh
Q 002970 610 ETPSGVLQDIAMKCGT-KVEFRPALVASTELQFSIEAWFAGEKIGEGIG-RTRREAQRQAAEGSIKHLAN 677 (862)
Q Consensus 610 ~n~KS~LQE~~QK~~~-~l~Y~~v~~~~Hdk~Ftv~V~i~G~~~G~G~G-kSKKeAEq~AA~~AL~~L~~ 677 (862)
.++|..|-.|+-+.+. .+.|+++.. .++.|..-+.+.|++|-.+.+ ++||.|||.||..||.+...
T Consensus 375 ~~~k~~l~~~~~~~~~~~~~ye~~~~--~d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l~~s~l 442 (477)
T KOG2334|consen 375 DTPKMVLADLCVKTKANGPVYETVQR--TDKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVALRKSNL 442 (477)
T ss_pred CCHHHHHHHhhhhhcCCCcchhhhhh--hhhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHhcCc
Confidence 4789999999998774 578887532 688999999999999988765 78999999999999987753
No 166
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=56.28 E-value=5 Score=39.27 Aligned_cols=14 Identities=21% Similarity=0.676 Sum_probs=12.1
Q ss_pred eEEEeCcchhhhhc
Q 002970 49 GIVFDLDETLIVAN 62 (862)
Q Consensus 49 ~lV~DLDeTLi~a~ 62 (862)
+|+|||||||+...
T Consensus 3 ~iiFD~DGTL~ds~ 16 (185)
T TIGR02009 3 AVIFDMDGVIVDTA 16 (185)
T ss_pred eEEEcCCCcccCCh
Confidence 58999999999665
No 167
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=55.70 E-value=9.5 Score=38.93 Aligned_cols=28 Identities=36% Similarity=0.436 Sum_probs=18.0
Q ss_pred eEEEeCcchhhhhccccch-HHHHHHHHhhh
Q 002970 49 GIVFDLDETLIVANTMRSF-EDRIEALLRKI 78 (862)
Q Consensus 49 ~lV~DLDeTLi~a~t~~~~-e~ri~~l~~~~ 78 (862)
.|++||||||+... +.+ +..+++++++.
T Consensus 3 ~v~~DlDGTLl~~~--~~i~~~~~~~i~~l~ 31 (215)
T TIGR01487 3 LVAIDIDGTLTEPN--RMISERAIEAIRKAE 31 (215)
T ss_pred EEEEecCCCcCCCC--cccCHHHHHHHHHHH
Confidence 57899999999532 223 44455665553
No 168
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=51.29 E-value=6.4 Score=41.74 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=12.3
Q ss_pred eEEEeCcchhhhhc
Q 002970 49 GIVFDLDETLIVAN 62 (862)
Q Consensus 49 ~lV~DLDeTLi~a~ 62 (862)
+|+||||||||...
T Consensus 6 ~vIFDlDGTLiDs~ 19 (267)
T PRK13478 6 AVIFDWAGTTVDFG 19 (267)
T ss_pred EEEEcCCCCeecCC
Confidence 78999999999753
No 169
>PF02169 LPP20: LPP20 lipoprotein; InterPro: IPR002217 A major antigen has been recognised in Helicobacter pylori, a protein with an apparent molecular weight of 20,000 and mass 18,283 kDa []. DNA sequence analysis revealed a 525 bp gene, encoding a 175-amino acid residue product with a typical 21-residue lipoprotein signal peptide and consensus prolipoprotein processing site []. Results of experimental work with Lpp20 are consistent with it being a nonessential lipoprotein []. Prokaryotic membrane lipoproteins are synthesised with precursor signal peptides that are cleaved by specific peptidases (signal peptidase II). The enzyme recognises a conserved sequence, cutting upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [].; GO: 0009279 cell outer membrane
Probab=49.77 E-value=20 Score=31.85 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=23.4
Q ss_pred CEEEeeeecCCHHHHHHHHHHHHHHHhh
Q 002970 785 GQVLGKGIGSTWDEAKMQAAEKALGSLR 812 (862)
Q Consensus 785 GkvyG~GtGsSKKeAKqqAAe~AL~aL~ 812 (862)
+..+|.|.|.+.+.|++.|-...-+.|+
T Consensus 12 ~~l~a~G~~~~~~~A~~~A~~~la~~i~ 39 (92)
T PF02169_consen 12 QYLYAVGSGSSREQAKQDALANLAEQIS 39 (92)
T ss_pred cEEEEEEcccChHHHHHHHHHHHHHhee
Confidence 4578999999999999998777777675
No 170
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=49.67 E-value=14 Score=34.74 Aligned_cols=12 Identities=58% Similarity=0.852 Sum_probs=10.8
Q ss_pred eEEEeCcchhhh
Q 002970 49 GIVFDLDETLIV 60 (862)
Q Consensus 49 ~lV~DLDeTLi~ 60 (862)
+|+||+|+||+.
T Consensus 2 ~~~~D~dgtL~~ 13 (132)
T TIGR01662 2 GVVLDLDGTLTD 13 (132)
T ss_pred EEEEeCCCceec
Confidence 589999999994
No 171
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=48.78 E-value=12 Score=41.38 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=21.4
Q ss_pred eeEEEeCcchhhhhccccchHHHHHHHHhh
Q 002970 48 LGIVFDLDETLIVANTMRSFEDRIEALLRK 77 (862)
Q Consensus 48 L~lV~DLDeTLi~a~t~~~~e~ri~~l~~~ 77 (862)
++++||+||||+..... ++.-.++++..
T Consensus 1 ~~~ifD~DGvL~~g~~~--i~ga~eal~~L 28 (321)
T TIGR01456 1 FGFAFDIDGVLFRGKKP--IAGASDALRRL 28 (321)
T ss_pred CEEEEeCcCceECCccc--cHHHHHHHHHH
Confidence 58999999999976644 77777666543
No 172
>PLN02151 trehalose-phosphatase
Probab=48.04 E-value=18 Score=41.36 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=20.6
Q ss_pred hHHHHHHHHhccceeEEEeCcchhh
Q 002970 35 LYNSCLTMLNLRCLGIVFDLDETLI 59 (862)
Q Consensus 35 ~~~~~~~ll~~r~L~lV~DLDeTLi 59 (862)
.++....+...++++|+||+||||+
T Consensus 86 ~~~~~~~~~~~~~~ll~lDyDGTL~ 110 (354)
T PLN02151 86 MFEEILHKSEGKQIVMFLDYDGTLS 110 (354)
T ss_pred HHHHHHHhhcCCceEEEEecCccCC
Confidence 4555566667788999999999999
No 173
>PLN03017 trehalose-phosphatase
Probab=47.63 E-value=12 Score=42.92 Aligned_cols=33 Identities=18% Similarity=0.362 Sum_probs=24.8
Q ss_pred EEEecccc--hHHHHHHHHhccceeEEEeCcchhh
Q 002970 27 WAFSVGSG--LYNSCLTMLNLRCLGIVFDLDETLI 59 (862)
Q Consensus 27 ~~~~~~~~--~~~~~~~ll~~r~L~lV~DLDeTLi 59 (862)
|--..|.. .++....+...+++.|+||+||||+
T Consensus 89 w~~~~psal~~~~~~~~~~~~k~~llflD~DGTL~ 123 (366)
T PLN03017 89 WIMQHPSALEMFEQIMEASRGKQIVMFLDYDGTLS 123 (366)
T ss_pred HHhhCChHHHHHHHHHHHhcCCCeEEEEecCCcCc
Confidence 43334443 5666677788999999999999999
No 174
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=47.32 E-value=13 Score=39.16 Aligned_cols=28 Identities=32% Similarity=0.318 Sum_probs=19.2
Q ss_pred EEEeCcchhhhhccccchHHHHHHHHhhh
Q 002970 50 IVFDLDETLIVANTMRSFEDRIEALLRKI 78 (862)
Q Consensus 50 lV~DLDeTLi~a~t~~~~e~ri~~l~~~~ 78 (862)
|++||||||+..... ..+..++++++..
T Consensus 2 i~~DlDGTll~~~~~-~~~~~~~~i~~l~ 29 (256)
T TIGR01486 2 IFTDLDGTLLDPHGY-DWGPAKEVLERLQ 29 (256)
T ss_pred EEEcCCCCCcCCCCc-CchHHHHHHHHHH
Confidence 789999999977641 2344666666543
No 175
>PLN02887 hydrolase family protein
Probab=47.06 E-value=14 Score=44.58 Aligned_cols=31 Identities=29% Similarity=0.320 Sum_probs=22.1
Q ss_pred eeEEEeCcchhhhhccccchHHHHHHHHhhhc
Q 002970 48 LGIVFDLDETLIVANTMRSFEDRIEALLRKIS 79 (862)
Q Consensus 48 L~lV~DLDeTLi~a~t~~~~e~ri~~l~~~~~ 79 (862)
=.|++||||||+.... .--+..+++++++..
T Consensus 309 KLIa~DLDGTLLn~d~-~Is~~t~eAI~kl~e 339 (580)
T PLN02887 309 SYIFCDMDGTLLNSKS-QISETNAKALKEALS 339 (580)
T ss_pred cEEEEeCCCCCCCCCC-ccCHHHHHHHHHHHH
Confidence 3689999999996531 113677888887764
No 176
>PF02169 LPP20: LPP20 lipoprotein; InterPro: IPR002217 A major antigen has been recognised in Helicobacter pylori, a protein with an apparent molecular weight of 20,000 and mass 18,283 kDa []. DNA sequence analysis revealed a 525 bp gene, encoding a 175-amino acid residue product with a typical 21-residue lipoprotein signal peptide and consensus prolipoprotein processing site []. Results of experimental work with Lpp20 are consistent with it being a nonessential lipoprotein []. Prokaryotic membrane lipoproteins are synthesised with precursor signal peptides that are cleaved by specific peptidases (signal peptidase II). The enzyme recognises a conserved sequence, cutting upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [].; GO: 0009279 cell outer membrane
Probab=46.01 E-value=28 Score=31.01 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=22.1
Q ss_pred CEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 002970 649 GEKIGEGIGRTRREAQRQAAEGSIKHLAN 677 (862)
Q Consensus 649 G~~~G~G~GkSKKeAEq~AA~~AL~~L~~ 677 (862)
+..+|.|.|.+++.|+++|-.+..+.|..
T Consensus 12 ~~l~a~G~~~~~~~A~~~A~~~la~~i~~ 40 (92)
T PF02169_consen 12 QYLYAVGSGSSREQAKQDALANLAEQISV 40 (92)
T ss_pred cEEEEEEcccChHHHHHHHHHHHHHheeE
Confidence 45789999999988888886666555533
No 177
>PLN02423 phosphomannomutase
Probab=45.29 E-value=17 Score=38.69 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=18.0
Q ss_pred ceeEEEeCcchhhhhccccch-HHHHHHHHhh
Q 002970 47 CLGIVFDLDETLIVANTMRSF-EDRIEALLRK 77 (862)
Q Consensus 47 ~L~lV~DLDeTLi~a~t~~~~-e~ri~~l~~~ 77 (862)
++.++|||||||+..+ +.+ +..++++++.
T Consensus 7 ~~i~~~D~DGTLl~~~--~~i~~~~~~ai~~l 36 (245)
T PLN02423 7 GVIALFDVDGTLTAPR--KEATPEMLEFMKEL 36 (245)
T ss_pred ceEEEEeccCCCcCCC--CcCCHHHHHHHHHH
Confidence 3556699999999654 223 4445555443
No 178
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=44.70 E-value=16 Score=38.99 Aligned_cols=29 Identities=38% Similarity=0.338 Sum_probs=19.2
Q ss_pred eeEEEeCcchhhhhccccchHHHHHHHHhh
Q 002970 48 LGIVFDLDETLIVANTMRSFEDRIEALLRK 77 (862)
Q Consensus 48 L~lV~DLDeTLi~a~t~~~~e~ri~~l~~~ 77 (862)
-.|++||||||+.... ...+.-+++++..
T Consensus 5 kli~~DlDGTLl~~~~-~~~~~~~~ai~~l 33 (273)
T PRK00192 5 LLVFTDLDGTLLDHHT-YSYEPAKPALKAL 33 (273)
T ss_pred eEEEEcCcccCcCCCC-cCcHHHHHHHHHH
Confidence 3689999999997432 2245556666554
No 179
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=43.74 E-value=9.6 Score=41.42 Aligned_cols=14 Identities=29% Similarity=0.617 Sum_probs=12.0
Q ss_pred eEEEeCcchhhhhc
Q 002970 49 GIVFDLDETLIVAN 62 (862)
Q Consensus 49 ~lV~DLDeTLi~a~ 62 (862)
+|+|||||||+.+.
T Consensus 42 ~VIFDlDGTLvDS~ 55 (286)
T PLN02779 42 ALLFDCDGVLVETE 55 (286)
T ss_pred EEEEeCceeEEccc
Confidence 68999999999644
No 180
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=42.87 E-value=9.3 Score=41.89 Aligned_cols=17 Identities=35% Similarity=0.458 Sum_probs=13.9
Q ss_pred ccceeEEEeCcchhhhh
Q 002970 45 LRCLGIVFDLDETLIVA 61 (862)
Q Consensus 45 ~r~L~lV~DLDeTLi~a 61 (862)
-++-+||+|||||+|.-
T Consensus 77 ~K~~aVvlDlDETvLdN 93 (274)
T COG2503 77 GKKKAVVLDLDETVLDN 93 (274)
T ss_pred CCCceEEEecchHhhcC
Confidence 44569999999999953
No 181
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=42.01 E-value=14 Score=38.49 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=17.0
Q ss_pred HHHhccceeEEEeCcchhhhhc
Q 002970 41 TMLNLRCLGIVFDLDETLIVAN 62 (862)
Q Consensus 41 ~ll~~r~L~lV~DLDeTLi~a~ 62 (862)
.|.++--=+|++|||+|||-=.
T Consensus 22 ~L~~~Gikgvi~DlDNTLv~wd 43 (175)
T COG2179 22 ILKAHGIKGVILDLDNTLVPWD 43 (175)
T ss_pred HHHHcCCcEEEEeccCceeccc
Confidence 4566666799999999999443
No 182
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=41.81 E-value=16 Score=37.84 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=16.7
Q ss_pred EEEeCcchhhhhccccchHHHHHHH
Q 002970 50 IVFDLDETLIVANTMRSFEDRIEAL 74 (862)
Q Consensus 50 lV~DLDeTLi~a~t~~~~e~ri~~l 74 (862)
|++||||||+. +.+.+.++.+.+
T Consensus 2 i~~DlDgTLl~--~~~~~~~~~~~~ 24 (236)
T TIGR02471 2 IITDLDNTLLG--DDEGLASFVELL 24 (236)
T ss_pred eEEeccccccC--CHHHHHHHHHHH
Confidence 78999999995 456666665433
No 183
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=39.93 E-value=12 Score=38.97 Aligned_cols=38 Identities=13% Similarity=0.147 Sum_probs=31.7
Q ss_pred EeeCcChHHHHH-HHhhhccccEEEEEEeCCcHHHHHHHHHh
Q 002970 165 VRLRPAWEDLRS-YLTARGRKRFEVYVCTMAERDYALEMWRL 205 (862)
Q Consensus 165 vKLRPgv~eLr~-FL~a~~sk~FEl~VyTmG~R~YA~~I~rl 205 (862)
++++|++.+++. .|+ ++-+.+.|.|+..+.|+..+++.
T Consensus 93 ~~l~pga~e~L~~~l~---~~G~~v~IvSas~~~~~~~ia~~ 131 (210)
T TIGR01545 93 VTAFPLVAERLRQYLE---SSDADIWLITGSPQPLVEAVYFD 131 (210)
T ss_pred CCCCccHHHHHHHHHH---hCCCEEEEEcCCcHHHHHHHHHh
Confidence 367899999553 554 56899999999999999999976
No 184
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=39.91 E-value=18 Score=38.60 Aligned_cols=13 Identities=46% Similarity=0.347 Sum_probs=11.8
Q ss_pred ceeEEEeCcchhh
Q 002970 47 CLGIVFDLDETLI 59 (862)
Q Consensus 47 ~L~lV~DLDeTLi 59 (862)
++.||.|||+|||
T Consensus 2 ~~ll~sDlD~Tl~ 14 (247)
T PF05116_consen 2 PRLLASDLDGTLI 14 (247)
T ss_dssp SEEEEEETBTTTB
T ss_pred CEEEEEECCCCCc
Confidence 4679999999999
No 185
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=39.83 E-value=23 Score=38.28 Aligned_cols=15 Identities=40% Similarity=0.437 Sum_probs=13.2
Q ss_pred ceeEEEeCcchhhhh
Q 002970 47 CLGIVFDLDETLIVA 61 (862)
Q Consensus 47 ~L~lV~DLDeTLi~a 61 (862)
++.|+||+||||+..
T Consensus 14 ~~li~~D~DGTLl~~ 28 (266)
T PRK10187 14 NYAWFFDLDGTLAEI 28 (266)
T ss_pred CEEEEEecCCCCCCC
Confidence 589999999999964
No 186
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=37.49 E-value=26 Score=33.99 Aligned_cols=15 Identities=13% Similarity=0.226 Sum_probs=12.6
Q ss_pred eEEEeCcchhhhhcc
Q 002970 49 GIVFDLDETLIVANT 63 (862)
Q Consensus 49 ~lV~DLDeTLi~a~t 63 (862)
++.||+|+||+.-..
T Consensus 2 ~~~~d~dgtl~~~~~ 16 (147)
T TIGR01656 2 ALFLDRDGVINEDTV 16 (147)
T ss_pred eEEEeCCCceeccCC
Confidence 578999999997664
No 187
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=37.33 E-value=25 Score=35.19 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=15.1
Q ss_pred eEEEeCcchhhhhccccchHH
Q 002970 49 GIVFDLDETLIVANTMRSFED 69 (862)
Q Consensus 49 ~lV~DLDeTLi~a~t~~~~e~ 69 (862)
.+++|+|+||+...+...+-+
T Consensus 1 iVisDIDGTL~~sd~~~~~~~ 21 (157)
T smart00775 1 IVISDIDGTITKSDVLGHVVP 21 (157)
T ss_pred CEEEecCCCCccccccccccc
Confidence 379999999997765443333
No 188
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=35.60 E-value=22 Score=37.87 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=21.6
Q ss_pred eEEEeCcchhhhhccccchHHHHHHHHhhhc
Q 002970 49 GIVFDLDETLIVANTMRSFEDRIEALLRKIS 79 (862)
Q Consensus 49 ~lV~DLDeTLi~a~t~~~~e~ri~~l~~~~~ 79 (862)
.++|||||||+.... .+...+++++++..
T Consensus 3 ~~~~D~DGtl~~~~~--~i~~a~~~l~~l~~ 31 (249)
T TIGR01457 3 GYLIDLDGTMYKGKE--RIPEAETFVHELQK 31 (249)
T ss_pred EEEEeCCCceEcCCe--eCcCHHHHHHHHHH
Confidence 589999999997764 45667777766553
No 189
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=34.72 E-value=20 Score=37.88 Aligned_cols=15 Identities=40% Similarity=0.439 Sum_probs=13.2
Q ss_pred cceeEEEeCcchhhh
Q 002970 46 RCLGIVFDLDETLIV 60 (862)
Q Consensus 46 r~L~lV~DLDeTLi~ 60 (862)
|+..|+||+||||+-
T Consensus 2 ~~~~l~lD~DGTL~~ 16 (244)
T TIGR00685 2 RKRAFFFDYDGTLSE 16 (244)
T ss_pred CcEEEEEecCccccC
Confidence 578899999999985
No 190
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=33.56 E-value=16 Score=42.30 Aligned_cols=14 Identities=36% Similarity=0.800 Sum_probs=12.1
Q ss_pred eEEEeCcchhhhhc
Q 002970 49 GIVFDLDETLIVAN 62 (862)
Q Consensus 49 ~lV~DLDeTLi~a~ 62 (862)
+++||||||||.+.
T Consensus 243 ~vIFDlDGTLiDs~ 256 (459)
T PRK06698 243 ALIFDMDGTLFQTD 256 (459)
T ss_pred heeEccCCceecch
Confidence 68999999999654
No 191
>PLN02382 probable sucrose-phosphatase
Probab=32.19 E-value=30 Score=40.00 Aligned_cols=17 Identities=41% Similarity=0.362 Sum_probs=14.5
Q ss_pred ccceeEEEeCcchhhhh
Q 002970 45 LRCLGIVFDLDETLIVA 61 (862)
Q Consensus 45 ~r~L~lV~DLDeTLi~a 61 (862)
.-+|.||-|||||||..
T Consensus 7 ~~~~lI~sDLDGTLL~~ 23 (413)
T PLN02382 7 SPRLMIVSDLDHTMVDH 23 (413)
T ss_pred CCCEEEEEcCCCcCcCC
Confidence 45799999999999954
No 192
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=31.96 E-value=24 Score=37.78 Aligned_cols=34 Identities=9% Similarity=-0.091 Sum_probs=24.2
Q ss_pred cChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHh
Q 002970 169 PAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRL 205 (862)
Q Consensus 169 Pgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rl 205 (862)
+.+.+...+|. ..-+.+.|.|+..+.|+......
T Consensus 123 ~~l~~a~~~L~---~~~~~~~iatn~~~~~~~~~~~~ 156 (257)
T TIGR01458 123 QILNQAFRLLL---DGAKPLLIAIGKGRYYKRKDGLA 156 (257)
T ss_pred HHHHHHHHHHH---cCCCCEEEEeCCCCCCcCCCCCC
Confidence 56777677776 45567889999998887654444
No 193
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=31.78 E-value=24 Score=27.51 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=16.0
Q ss_pred HHhhcCccccCCeEEEeeccc
Q 002970 106 QYAENDQVNENGKVIKVQSEV 126 (862)
Q Consensus 106 q~~~~d~v~~ng~~~~~q~E~ 126 (862)
.|..+|.|++||++++++--.
T Consensus 9 ~Y~~Gd~V~~~g~~y~a~~~~ 29 (41)
T PF02839_consen 9 TYNAGDRVSYNGKLYQAKWWT 29 (41)
T ss_dssp EE-TT-EEEETTEEEEESSSC
T ss_pred EEcCCCEEEECCCEEEEeecc
Confidence 477899999999999987643
No 194
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=31.09 E-value=1.9e+02 Score=26.81 Aligned_cols=76 Identities=17% Similarity=0.202 Sum_probs=50.3
Q ss_pred ccccceeeccccceeeeecCCCCCCceEEEeeCcChHHHHHHHhhhc--cccEEEEEEeCCcHHHHHHHHHhhCCCCCcc
Q 002970 136 ALVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARG--RKRFEVYVCTMAERDYALEMWRLLDPESNLI 213 (862)
Q Consensus 136 ~~~rpvirl~~~n~~ltrI~P~~r~~~~~vKLRPgv~eLr~FL~a~~--sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lF 213 (862)
++++=.||+|....+-.|.+... -+.+|+.|+.... ...|+| -|+ |
T Consensus 4 ~~t~i~vRlP~G~r~~rrF~~~~-----------~L~~v~~fv~~~g~~~~~f~L--~t~-------------------F 51 (82)
T cd01773 4 PKARLMLRYPDGKREQIALPEQA-----------KLLALVRHVQSKGYPNERFEL--LTN-------------------F 51 (82)
T ss_pred CeeEEEEECCCCCEEEEEeCCCC-----------cHHHHHHHHHhcCCCCCCEEE--ecC-------------------C
Confidence 45666899999888777776544 2667788886321 122333 232 7
Q ss_pred ccccccCeEEeccCCCccchhhhccCCCCCCcEEEEEcCC
Q 002970 214 NTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMALVIDDR 253 (862)
Q Consensus 214 g~~~l~~RIisres~~~KsL~~lfp~~~~~~~~vVIIDDR 253 (862)
. .|+++-++-+ ++|+.+- -.++.+|||-||
T Consensus 52 P-----Rr~~~~~d~~-~TL~e~G----L~P~~~LfVq~r 81 (82)
T cd01773 52 P-----RRKLSHLDYD-ITLQEAG----LCPQETVFVQER 81 (82)
T ss_pred C-----CcccCCcccC-CCHHHcC----CCCCcEEEEecC
Confidence 7 7888765444 5777664 357899999998
No 195
>PRK10444 UMP phosphatase; Provisional
Probab=29.86 E-value=30 Score=37.17 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=20.5
Q ss_pred eEEEeCcchhhhhccccchHHHHHHHHhh
Q 002970 49 GIVFDLDETLIVANTMRSFEDRIEALLRK 77 (862)
Q Consensus 49 ~lV~DLDeTLi~a~t~~~~e~ri~~l~~~ 77 (862)
.++|||||||+...+ -++.-++++++.
T Consensus 3 ~v~~DlDGtL~~~~~--~~p~a~~~l~~L 29 (248)
T PRK10444 3 NVICDIDGVLMHDNV--AVPGAAEFLHRI 29 (248)
T ss_pred EEEEeCCCceEeCCe--eCccHHHHHHHH
Confidence 589999999998874 367777776544
No 196
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=28.58 E-value=43 Score=41.54 Aligned_cols=33 Identities=27% Similarity=0.176 Sum_probs=22.9
Q ss_pred cceeEEEeCcchhhhhccccchHHHHHHHHhhhc
Q 002970 46 RCLGIVFDLDETLIVANTMRSFEDRIEALLRKIS 79 (862)
Q Consensus 46 r~L~lV~DLDeTLi~a~t~~~~e~ri~~l~~~~~ 79 (862)
.+-.|++||||||+...+. ..+..+++|++...
T Consensus 415 ~~KLIfsDLDGTLLd~d~~-i~~~t~eAL~~L~e 447 (694)
T PRK14502 415 FKKIVYTDLDGTLLNPLTY-SYSTALDALRLLKD 447 (694)
T ss_pred eeeEEEEECcCCCcCCCCc-cCHHHHHHHHHHHH
Confidence 3357889999999986553 24566777766553
No 197
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=28.22 E-value=70 Score=41.00 Aligned_cols=65 Identities=15% Similarity=0.179 Sum_probs=52.5
Q ss_pred CchHHHHHHhhhcCCCceeeecCCCCCCCCCCccEEEEEEECCEEEeeeecCC--HHHHHHHHHHHHHHHh
Q 002970 743 GSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGST--WDEAKMQAAEKALGSL 811 (862)
Q Consensus 743 N~V~lLnELcqkeGL~~~f~~e~v~~sGp~H~keF~aqV~IdGkvyG~GtGsS--KKeAKqqAAe~AL~aL 811 (862)
+-+..|-.+|.+..+...|. +..+++.....|.|.|.|.+..| .+.|++ ||.|...||+--++-|
T Consensus 2 d~k~fly~~~~k~~~~p~~d---~~~~~~~~rqrf~ce~~~~~~~~-~~~~~stnkKda~knac~dfv~yl 68 (1282)
T KOG0921|consen 2 DVKEFLYAWLGKNKYGPTYD---IRSEGRKGRQRFLCEVRVEGFGY-TAVGNSTNKKDAATNAAQDFCQYL 68 (1282)
T ss_pred cHHHHHHHHHhhhccCccee---hhhhcccchhheeeeeeccCCcc-eeeecccccchhhHHHHHHHHHHh
Confidence 34667888888888886566 45688888889999999998887 666665 9999999999887777
No 198
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=28.22 E-value=28 Score=35.00 Aligned_cols=16 Identities=44% Similarity=0.621 Sum_probs=11.3
Q ss_pred EEEeCcchhhhhcccc
Q 002970 50 IVFDLDETLIVANTMR 65 (862)
Q Consensus 50 lV~DLDeTLi~a~t~~ 65 (862)
+-||||+|||...+..
T Consensus 3 a~fD~DgTLi~~~s~~ 18 (159)
T PF08645_consen 3 AFFDLDGTLIKTKSGK 18 (159)
T ss_dssp EEE-SCTTTEE-STST
T ss_pred EEEeCCCCccCCCCCC
Confidence 5799999999887554
No 199
>PF09003 Phage_integ_N: Bacteriophage lambda integrase, N-terminal domain ; InterPro: IPR015094 The amino terminal domain of bacteriophage lambda integrase folds into a three-stranded, antiparallel beta-sheet that packs against a C-terminal alpha-helix, adopting a fold that is structurally related to the three-stranded beta-sheet family of DNA-binding domains (which includes the GCC-box DNA-binding domain and the N-terminal domain of Tn916 integrase). This domain is responsible for high-affinity binding to each of the five DNA arm-type sites and is also a context-sensitive modulator of DNA cleavage []. ; GO: 0003677 DNA binding, 0008907 integrase activity, 0015074 DNA integration; PDB: 1Z1G_B 1Z1B_A 2WCC_3 1KJK_A.
Probab=27.40 E-value=51 Score=30.17 Aligned_cols=32 Identities=31% Similarity=0.256 Sum_probs=20.7
Q ss_pred EEEEEEECCEEEeeeecCCHHHHHHHHHHHHHHH
Q 002970 777 VYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGS 810 (862)
Q Consensus 777 F~aqV~IdGkvyG~GtGsSKKeAKqqAAe~AL~a 810 (862)
|.+.--|.|+.+|-| +++.+|+.+|.++=...
T Consensus 29 y~Yr~P~tGk~~~LG--~d~~~Ai~~A~eaN~~i 60 (75)
T PF09003_consen 29 YQYRNPITGKEHGLG--TDRAEAIAQAIEANLRI 60 (75)
T ss_dssp EEEE-TTTS-EEEEE--S-HHHHHHHHHHHHHHH
T ss_pred EEEecCCCCceeeCC--CCHHHHHHHHHHHHHHH
Confidence 335556889988555 59999999998875443
No 200
>PF00333 Ribosomal_S5: Ribosomal protein S5, N-terminal domain; InterPro: IPR013810 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S5 is one of the proteins from the small ribosomal subunit, and is a protein of 166 to 254 amino-acid residues. In Escherichia coli, S5 is known to be important in the assembly and function of the 30S ribosomal subunit. Mutations in S5 have been shown to increase translational error frequencies. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, ], groups bacterial, cyanelle, red algal chloroplast, archaeal and fungal mitochondrial S5; mammalian, Caenorhabditis elegans, Drosophila and plant S2; and yeast S4 (SUP44). This entry represents the N-terminal domain of ribosomal protein S5, which has an alpha-beta(3)-alpha structure that folds into two layers, alpha/beta.; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2ZKQ_e 2XZN_E 2XZM_E 3O30_B 1S1H_E 3IZB_E 3U5C_C 3U5G_C 3O2Z_B 3BBN_E ....
Probab=27.16 E-value=52 Score=29.24 Aligned_cols=39 Identities=21% Similarity=0.254 Sum_probs=28.6
Q ss_pred CCceEEEEEEECCEE----EEEeecCCHHHHHHHHHHHHHHHH
Q 002970 637 TELQFSIEAWFAGEK----IGEGIGRTRREAQRQAAEGSIKHL 675 (862)
Q Consensus 637 Hdk~Ftv~V~i~G~~----~G~G~GkSKKeAEq~AA~~AL~~L 675 (862)
.-..|.+-|.+++.. ||.|.++.-..|-++|-+.|.++|
T Consensus 20 r~~~~~alvvvGn~~G~vG~G~gKa~~~~~Ai~kA~~~A~knl 62 (67)
T PF00333_consen 20 RIFSFRALVVVGNGNGLVGFGVGKAKEVPDAIRKAKRKAKKNL 62 (67)
T ss_dssp EEEEEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHHHCSE
T ss_pred ceeEEEEEEEEecCCCcEecCcccchhHHHHHHHHHHHHHhCC
Confidence 346788888887643 666777777888888888887654
No 201
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=27.12 E-value=33 Score=40.25 Aligned_cols=67 Identities=18% Similarity=0.085 Sum_probs=53.8
Q ss_pred CCCCchHHHHHHhhhcCCCceeeecCCCCCCCCCCccEEEEEEECCEEEeeeec-CCHHHHHHHHHHHHHHHh
Q 002970 740 KLMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIG-STWDEAKMQAAEKALGSL 811 (862)
Q Consensus 740 ~~~N~V~lLnELcqkeGL~~~f~~e~v~~sGp~H~keF~aqV~IdGkvyG~GtG-sSKKeAKqqAAe~AL~aL 811 (862)
....+++-|-.||.+.+.+-+-|+. ...-.+.|.+.++++|+.|..+.+ .|||.|+|.||..||...
T Consensus 373 ~~~~~k~~l~~~~~~~~~~~~~ye~-----~~~~d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l~~s 440 (477)
T KOG2334|consen 373 KWDTPKMVLADLCVKTKANGPVYET-----VQRTDKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVALRKS 440 (477)
T ss_pred CCCCHHHHHHHhhhhhcCCCcchhh-----hhhhhhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHhc
Confidence 3357899999999988887775532 122557899999999999988766 589999999999998775
No 202
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=26.82 E-value=33 Score=36.93 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=19.7
Q ss_pred eEEEeCcchhhhhccccchHHHHHHHHhhh
Q 002970 49 GIVFDLDETLIVANTMRSFEDRIEALLRKI 78 (862)
Q Consensus 49 ~lV~DLDeTLi~a~t~~~~e~ri~~l~~~~ 78 (862)
+++||+||||+...+ .++...++|+++.
T Consensus 4 ~~~~D~DGtl~~~~~--~~~ga~e~l~~L~ 31 (279)
T TIGR01452 4 GFIFDCDGVLWLGER--VVPGAPELLDRLA 31 (279)
T ss_pred EEEEeCCCceEcCCe--eCcCHHHHHHHHH
Confidence 688999999997653 4666556665543
No 203
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=26.33 E-value=96 Score=37.03 Aligned_cols=43 Identities=21% Similarity=0.148 Sum_probs=36.8
Q ss_pred EEEeeCcChHHHHHHHhhhcccc-EEEEEEeCCcHHHHHHHHHhhCC
Q 002970 163 VLVRLRPAWEDLRSYLTARGRKR-FEVYVCTMAERDYALEMWRLLDP 208 (862)
Q Consensus 163 ~~vKLRPgv~eLr~FL~a~~sk~-FEl~VyTmG~R~YA~~I~rlLDP 208 (862)
+...+||++.++.+.|+ +.- +.++|.|...+.+|..+++.++=
T Consensus 381 ~~d~~~~g~~e~l~~L~---~~g~i~v~ivTgd~~~~a~~i~~~lgi 424 (556)
T TIGR01525 381 LRDQLRPEAKEAIAALK---RAGGIKLVMLTGDNRSAAEAVAAELGI 424 (556)
T ss_pred ecccchHhHHHHHHHHH---HcCCCeEEEEeCCCHHHHHHHHHHhCC
Confidence 34579999999888886 456 99999999999999999999654
No 204
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.78 E-value=35 Score=40.82 Aligned_cols=26 Identities=27% Similarity=0.192 Sum_probs=19.7
Q ss_pred HHHHHHHhccceeEEEeCcchhhhhc
Q 002970 37 NSCLTMLNLRCLGIVFDLDETLIVAN 62 (862)
Q Consensus 37 ~~~~~ll~~r~L~lV~DLDeTLi~a~ 62 (862)
.....|--.++=+||+|||+||..-.
T Consensus 212 Sl~~A~~g~~kK~LVLDLDNTLWGGV 237 (574)
T COG3882 212 SLLAAMSGKSKKALVLDLDNTLWGGV 237 (574)
T ss_pred HHHHHhhCcccceEEEecCCcccccc
Confidence 33445667777899999999998554
No 205
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=24.66 E-value=55 Score=33.82 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=15.4
Q ss_pred hccceeEEEeCcchhhhhccc
Q 002970 44 NLRCLGIVFDLDETLIVANTM 64 (862)
Q Consensus 44 ~~r~L~lV~DLDeTLi~a~t~ 64 (862)
..--=+||||+|.||..-+..
T Consensus 38 ~~Gik~li~DkDNTL~~~~~~ 58 (168)
T PF09419_consen 38 KKGIKALIFDKDNTLTPPYED 58 (168)
T ss_pred hcCceEEEEcCCCCCCCCCcC
Confidence 334468999999999865543
No 206
>PHA02629 A-type inclusion body protein; Provisional
Probab=24.59 E-value=1.6e+02 Score=25.55 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=23.4
Q ss_pred hhhhhHHHHHHhhhhHHHHHHHhhcCcc
Q 002970 86 RIAGMQAEVKRYQDDKNILKQYAENDQV 113 (862)
Q Consensus 86 ~~~~~~~e~kr~~~d~~lL~q~~~~d~v 113 (862)
++..+.+|++|-.+....|..|++.|.+
T Consensus 34 ~iavleaelr~~metik~lekf~efdrl 61 (61)
T PHA02629 34 IIAVLEAELRKSMETIKALEKFMEFDRL 61 (61)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3556788999999899999999998864
No 207
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=24.37 E-value=33 Score=33.87 Aligned_cols=73 Identities=14% Similarity=0.132 Sum_probs=43.9
Q ss_pred eeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCCCccchhhhccCCCCCCc
Q 002970 166 RLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPK 245 (862)
Q Consensus 166 KLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~~~KsL~~lfp~~~~~~~ 245 (862)
.++++. ..+.|+ .+-+.+.|.|++.+..+..+++.+.=+ .+|. +.+ +....+..+...-...++
T Consensus 30 ~~~~~~--~i~~Lk---~~G~~i~IvTn~~~~~~~~~l~~~gi~-~~~~---------~~~-~k~~~~~~~~~~~~~~~~ 93 (154)
T TIGR01670 30 NVRDGY--GIRCAL---KSGIEVAIITGRKAKLVEDRCKTLGIT-HLYQ---------GQS-NKLIAFSDILEKLALAPE 93 (154)
T ss_pred echhHH--HHHHHH---HCCCEEEEEECCCCHHHHHHHHHcCCC-EEEe---------ccc-chHHHHHHHHHHcCCCHH
Confidence 344443 456786 577999999999999999999885433 2232 111 122223333322124566
Q ss_pred EEEEEcCCc
Q 002970 246 MALVIDDRL 254 (862)
Q Consensus 246 ~vVIIDDR~ 254 (862)
-++.|.|+.
T Consensus 94 ~~~~vGDs~ 102 (154)
T TIGR01670 94 NVAYIGDDL 102 (154)
T ss_pred HEEEECCCH
Confidence 788888874
No 208
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=23.70 E-value=89 Score=32.65 Aligned_cols=19 Identities=47% Similarity=0.583 Sum_probs=15.5
Q ss_pred eEEEeCcchhhhhccccch
Q 002970 49 GIVFDLDETLIVANTMRSF 67 (862)
Q Consensus 49 ~lV~DLDeTLi~a~t~~~~ 67 (862)
..+||+||||+.-.|+..|
T Consensus 7 la~FDfDgTLt~~ds~~~f 25 (210)
T TIGR01545 7 IIFFDLDGTLHQQDMFGSF 25 (210)
T ss_pred EEEEcCCCCCccCccHHHH
Confidence 3789999999988877644
No 209
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=23.23 E-value=2e+02 Score=34.37 Aligned_cols=37 Identities=16% Similarity=0.453 Sum_probs=29.5
Q ss_pred hhhHHHHHH-------h-hhhHHHHHHHhhcCccccCCeEEEeec
Q 002970 88 AGMQAEVKR-------Y-QDDKNILKQYAENDQVNENGKVIKVQS 124 (862)
Q Consensus 88 ~~~~~e~kr-------~-~~d~~lL~q~~~~d~v~~ng~~~~~q~ 124 (862)
-.+++|+++ | -.|..+.++|++.=+|+..|+++-++.
T Consensus 197 L~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~ 241 (534)
T COG4172 197 LDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGT 241 (534)
T ss_pred HHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCc
Confidence 345666664 2 389999999999999999999988765
No 210
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=23.04 E-value=2e+02 Score=23.17 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=15.0
Q ss_pred EEEEEeecCCHHHHHHHHHHH
Q 002970 650 EKIGEGIGRTRREAQRQAAEG 670 (862)
Q Consensus 650 ~~~G~G~GkSKKeAEq~AA~~ 670 (862)
+.+-.+-.+|||||+..+++.
T Consensus 17 k~~~k~GF~TkkeA~~~~~~~ 37 (46)
T PF14657_consen 17 KQKTKRGFKTKKEAEKALAKI 37 (46)
T ss_pred EEEEcCCCCcHHHHHHHHHHH
Confidence 344455579999999887663
No 211
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=22.97 E-value=2.3e+02 Score=27.92 Aligned_cols=12 Identities=8% Similarity=0.252 Sum_probs=6.4
Q ss_pred HHHHHHHHHhhC
Q 002970 196 RDYALEMWRLLD 207 (862)
Q Consensus 196 R~YA~~I~rlLD 207 (862)
......+.++++
T Consensus 75 ~~k~~~~~~~~~ 86 (154)
T TIGR01670 75 SNKLIAFSDILE 86 (154)
T ss_pred cchHHHHHHHHH
Confidence 445555555544
No 212
>cd00036 ChtBD3 Chitin/cellulose binding domain. Putative carbohydrate binding domain found in many different glycosyl hydrolase enzymes. May occur in tandem arrangements.
Probab=22.88 E-value=48 Score=25.80 Aligned_cols=19 Identities=42% Similarity=0.523 Sum_probs=16.6
Q ss_pred HHhhcCccccCCeEEEeec
Q 002970 106 QYAENDQVNENGKVIKVQS 124 (862)
Q Consensus 106 q~~~~d~v~~ng~~~~~q~ 124 (862)
-|..+|.|++||++|+++-
T Consensus 7 ~Y~~Gd~V~~~g~~y~a~w 25 (41)
T cd00036 7 VYTAGDLVSYNGKVYKAKW 25 (41)
T ss_pred EecCCCEEEECCeEEEEee
Confidence 4778999999999999865
No 213
>PF09921 DUF2153: Uncharacterized protein conserved in archaea (DUF2153); InterPro: IPR014450 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.63 E-value=1.2e+02 Score=30.25 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=25.8
Q ss_pred chHHHHHHHHhhhccCCChhhhh----hhHHHHHHhhhhHHHHHHHhhc
Q 002970 66 SFEDRIEALLRKISTEVDPQRIA----GMQAEVKRYQDDKNILKQYAEN 110 (862)
Q Consensus 66 ~~e~ri~~l~~~~~~~~dp~~~~----~~~~e~kr~~~d~~lL~q~~~~ 110 (862)
-+.++|++...|+ .||.-++ .|+.||++.- +++|.+|++=
T Consensus 41 hm~RTlKaFd~WL---qdP~ItshMPreML~dv~~~~--~~il~~llel 84 (126)
T PF09921_consen 41 HMMRTLKAFDQWL---QDPMITSHMPREMLEDVWETL--REILEQLLEL 84 (126)
T ss_pred HHHHHHHHHHHHH---cCchhHhcCCHHHHHHHHHHH--HHHHHHHHHH
Confidence 3678899999999 4565543 5677776433 3455555543
No 214
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=22.62 E-value=40 Score=34.00 Aligned_cols=13 Identities=54% Similarity=0.777 Sum_probs=10.7
Q ss_pred EEEeCcchhhhhc
Q 002970 50 IVFDLDETLIVAN 62 (862)
Q Consensus 50 lV~DLDeTLi~a~ 62 (862)
++||+|+||+..+
T Consensus 16 ~~~D~Dgtl~~~~ 28 (166)
T TIGR01664 16 AAFDLDGTLITTR 28 (166)
T ss_pred EEEeCCCceEecC
Confidence 7789999999643
No 215
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=22.44 E-value=38 Score=34.36 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=0.0
Q ss_pred eEEEeCcchhh
Q 002970 49 GIVFDLDETLI 59 (862)
Q Consensus 49 ~lV~DLDeTLi 59 (862)
.||||+|+||+
T Consensus 23 li~~D~Dgtl~ 33 (183)
T PRK09484 23 LLICDVDGVFS 33 (183)
T ss_pred EEEEcCCeeee
No 216
>PF10195 Phospho_p8: DNA-binding nuclear phosphoprotein p8; InterPro: IPR018792 P8 is a short 80-82 amino acid protein that is conserved from nematodes to humans. It carries at least one protein kinase C domain suggesting a possible role in signal transduction and it is thought to be a phosphoprotein, but the sites of phosphorylation and the kinases involved remain to be determined [].
Probab=21.65 E-value=39 Score=29.73 Aligned_cols=14 Identities=50% Similarity=0.902 Sum_probs=11.5
Q ss_pred EEeecCCHHHHHHH
Q 002970 653 GEGIGRTRREAQRQ 666 (862)
Q Consensus 653 G~G~GkSKKeAEq~ 666 (862)
|.|.|+|||||...
T Consensus 23 GsgKgRTK~E~~~h 36 (60)
T PF10195_consen 23 GSGKGRTKKEAAEH 36 (60)
T ss_pred CCCCCccHHHHHHh
Confidence 57889999998764
No 217
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=20.87 E-value=2.8e+02 Score=35.42 Aligned_cols=39 Identities=26% Similarity=0.343 Sum_probs=23.0
Q ss_pred ChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCC
Q 002970 170 AWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPE 209 (862)
Q Consensus 170 gv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~ 209 (862)
+..|+.+-|+|-++..|-+.+.-.-+|. -...++.|||.
T Consensus 208 ~~~eiIrClka~mNn~~Gl~~vL~~e~~-lllla~aldpr 246 (1102)
T KOG1924|consen 208 NLQEIIRCLKAFMNNKFGLVLVLRRERS-LLLLARALDPR 246 (1102)
T ss_pred HHHHHHHHHHHHhccccceeeeecCCcc-HHHHHHhcCcc
Confidence 3555566666666666666665555555 44555666664
No 218
>TIGR01021 rpsE_bact ribosomal protein S5, bacterial/organelle type. This model finds chloroplast ribosomal protein S5 as well as bacterial ribosomal protein S5. A candidate mitochondrial form (Saccharomyces cerevisiae YBR251W and its homolog) differs substantially and is not included in this model.
Probab=20.85 E-value=1.1e+02 Score=31.32 Aligned_cols=41 Identities=27% Similarity=0.323 Sum_probs=28.5
Q ss_pred CCceEEEEEEECCEE----EEEeecCCHHHHHHHHHHHHHHHHHh
Q 002970 637 TELQFSIEAWFAGEK----IGEGIGRTRREAQRQAAEGSIKHLAN 677 (862)
Q Consensus 637 Hdk~Ftv~V~i~G~~----~G~G~GkSKKeAEq~AA~~AL~~L~~ 677 (862)
--..|.+-|.+++.. ||.|.++.-.+|-++|.+.|.++|..
T Consensus 20 r~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~kA~~~Ak~nl~~ 64 (154)
T TIGR01021 20 RRFSFSALVVVGDGKGRVGFGFGKAKEVPDAIKKAVEKARKNLIN 64 (154)
T ss_pred cEEEEEEEEEEECCCCeEeeeeeecchHHHHHHHHHHHHHhCeEE
Confidence 345788888887654 55555555678888888888777743
No 219
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=20.37 E-value=1.3e+02 Score=36.15 Aligned_cols=42 Identities=24% Similarity=0.198 Sum_probs=35.8
Q ss_pred EEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCC
Q 002970 164 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDP 208 (862)
Q Consensus 164 ~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP 208 (862)
..++||++.++.+.|+ +.-++++|.|...+.+|+.+++.+.=
T Consensus 403 ~d~l~~~a~e~i~~Lk---~~Gi~v~ilSgd~~~~a~~ia~~lgi 444 (562)
T TIGR01511 403 EDQLRPEAKEVIQALK---RRGIEPVMLTGDNRKTAKAVAKELGI 444 (562)
T ss_pred cccccHHHHHHHHHHH---HcCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 4568999999888886 45689999999999999999998644
No 220
>PF04098 Rad52_Rad22: Rad52/22 family double-strand break repair protein; InterPro: IPR007232 The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent and RecA-independent DNA recombination pathways. This family includes proteins related to Rad52. These proteins contain two helix-hairpin-helix motifs [].; GO: 0006281 DNA repair, 0006310 DNA recombination; PDB: 1KN0_I 1H2I_U.
Probab=20.25 E-value=1.9e+02 Score=29.11 Aligned_cols=65 Identities=11% Similarity=0.092 Sum_probs=30.9
Q ss_pred chHHHHHHHHhcCCCeEEEEeee---cCCC--------ceEEEEEEECCEE----EEEeecCC-----------HHHHHH
Q 002970 612 PSGVLQDIAMKCGTKVEFRPALV---ASTE--------LQFSIEAWFAGEK----IGEGIGRT-----------RREAQR 665 (862)
Q Consensus 612 ~KS~LQE~~QK~~~~l~Y~~v~~---~~Hd--------k~Ftv~V~i~G~~----~G~G~GkS-----------KKeAEq 665 (862)
....|+|++--.++..+|..... ..+. -...|+|.+.+-. +|.|+... ||+|--
T Consensus 38 vi~~aN~vfGfngWs~~i~~~~~~~~~~~~~~~~~~~~~~~~vritLkdg~~~e~~G~g~~~~~~~k~~a~~~akK~Avt 117 (154)
T PF04098_consen 38 VIELANEVFGFNGWSSEIISLEQDFVEEEPGEGKYSVGYSAIVRITLKDGTYREDIGYGWSENMDGKGMAIEKAKKGAVT 117 (154)
T ss_dssp HHHHHHHHH-TTTEEEEEEEEEEEEEEESSS--SEEEEEEEEEEEEETTS-EEEEEEEEEEESES-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCceEEEeeEeeeeeccCCceeEEEEEEEEEEEEEeCCceeeecceEEEecCCccchhhhhhHHHHHH
Confidence 35666666655666555554332 1121 1445666664433 45555442 455555
Q ss_pred HHHHHHHHHHH
Q 002970 666 QAAEGSIKHLA 676 (862)
Q Consensus 666 ~AA~~AL~~L~ 676 (862)
.|=+.|+..+.
T Consensus 118 dAlKRA~~~fG 128 (154)
T PF04098_consen 118 DALKRALRSFG 128 (154)
T ss_dssp HHHHHHHHTT-
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 221
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=20.01 E-value=52 Score=32.88 Aligned_cols=13 Identities=31% Similarity=0.414 Sum_probs=10.4
Q ss_pred eEEEeCcchhhhh
Q 002970 49 GIVFDLDETLIVA 61 (862)
Q Consensus 49 ~lV~DLDeTLi~a 61 (862)
+|.||+|+||+..
T Consensus 5 ~~~~d~~~t~~~~ 17 (181)
T PRK08942 5 AIFLDRDGVINVD 17 (181)
T ss_pred EEEEECCCCcccC
Confidence 5889999997543
Done!