Query 002971
Match_columns 862
No_of_seqs 328 out of 1520
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 14:27:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002971.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002971hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1077 Vesicle coat complex A 100.0 5E-107 1E-111 878.2 58.2 809 3-859 68-937 (938)
2 PTZ00429 beta-adaptin; Provisi 100.0 4E-107 1E-111 947.2 60.0 544 1-550 60-607 (746)
3 KOG1061 Vesicle coat complex A 100.0 3E-107 6E-112 904.3 45.9 691 1-770 41-734 (734)
4 KOG1060 Vesicle coat complex A 100.0 4.8E-97 1E-101 810.8 56.8 807 1-859 63-967 (968)
5 KOG1062 Vesicle coat complex A 100.0 5.4E-78 1.2E-82 665.9 51.5 494 3-510 64-599 (866)
6 PF01602 Adaptin_N: Adaptin N 100.0 8.1E-74 1.7E-78 673.0 38.2 482 1-491 34-524 (526)
7 COG5096 Vesicle coat complex, 100.0 1.6E-64 3.5E-69 574.8 36.2 531 1-543 47-624 (757)
8 KOG1059 Vesicle coat complex A 100.0 4.6E-56 1E-60 484.6 37.1 479 3-490 66-576 (877)
9 KOG1078 Vesicle coat complex C 100.0 2E-52 4.4E-57 461.6 48.6 778 5-856 60-864 (865)
10 KOG1058 Vesicle coat complex C 100.0 1.4E-47 3.1E-52 419.4 39.0 399 1-418 48-466 (948)
11 COG5240 SEC21 Vesicle coat com 100.0 8.4E-38 1.8E-42 333.2 43.7 469 6-491 62-555 (898)
12 PF02296 Alpha_adaptin_C: Alph 99.7 4.3E-17 9.3E-22 146.7 9.1 105 750-855 1-113 (113)
13 PF09066 B2-adapt-app_C: Beta2 99.5 2.7E-13 5.8E-18 124.5 11.0 111 750-861 1-114 (114)
14 PF01602 Adaptin_N: Adaptin N 99.4 1.9E-11 4.2E-16 144.0 25.6 356 11-380 116-486 (526)
15 PTZ00429 beta-adaptin; Provisi 99.2 2.7E-08 5.8E-13 118.3 32.9 170 48-226 34-207 (746)
16 PF14796 AP3B1_C: Clathrin-ada 99.2 2.3E-10 5.1E-15 106.4 12.0 85 634-718 56-145 (145)
17 PRK13800 putative oxidoreducta 99.0 2.8E-08 6E-13 123.3 26.0 270 48-371 623-893 (897)
18 PRK09687 putative lyase; Provi 99.0 8.4E-09 1.8E-13 109.9 18.1 252 46-372 23-277 (280)
19 PLN03200 cellulose synthase-in 99.0 1.2E-06 2.5E-11 112.2 39.5 292 201-500 407-732 (2102)
20 PRK13800 putative oxidoreducta 99.0 5.7E-08 1.2E-12 120.6 27.2 257 60-375 608-865 (897)
21 PLN03200 cellulose synthase-in 99.0 8.5E-07 1.9E-11 113.4 34.8 330 14-380 409-767 (2102)
22 PRK09687 putative lyase; Provi 98.9 2.3E-07 4.9E-12 99.0 24.4 221 13-268 27-249 (280)
23 PF12717 Cnd1: non-SMC mitotic 98.9 2.8E-08 6.2E-13 98.9 16.1 146 59-209 1-157 (178)
24 PF10508 Proteasom_PSMB: Prote 98.9 8.9E-06 1.9E-10 94.4 35.9 392 14-450 43-464 (503)
25 KOG2171 Karyopherin (importin) 98.9 3.5E-05 7.5E-10 92.2 40.5 519 9-541 4-604 (1075)
26 KOG0166 Karyopherin (importin) 98.8 3.1E-06 6.8E-11 94.5 29.0 301 10-342 67-395 (514)
27 KOG2171 Karyopherin (importin) 98.7 3.6E-05 7.9E-10 92.0 35.9 425 51-484 9-497 (1075)
28 KOG2023 Nuclear transport rece 98.7 8.2E-07 1.8E-11 99.1 19.9 404 64-494 376-821 (885)
29 KOG1058 Vesicle coat complex C 98.6 1.5E-05 3.3E-10 90.3 25.5 314 81-431 99-442 (948)
30 smart00809 Alpha_adaptinC2 Ada 98.6 2.2E-07 4.7E-12 83.9 8.8 88 644-732 4-91 (104)
31 KOG2023 Nuclear transport rece 98.6 2E-05 4.4E-10 88.3 25.3 378 41-454 85-508 (885)
32 KOG0212 Uncharacterized conser 98.5 0.0002 4.3E-09 79.3 31.9 361 13-378 4-407 (675)
33 KOG1060 Vesicle coat complex A 98.5 0.00024 5.3E-09 81.4 32.8 411 54-489 43-492 (968)
34 PF10508 Proteasom_PSMB: Prote 98.5 3.2E-05 6.9E-10 89.9 25.0 258 10-270 78-367 (503)
35 KOG1059 Vesicle coat complex A 98.4 0.00012 2.6E-09 83.1 27.6 307 40-360 138-462 (877)
36 PF02883 Alpha_adaptinC2: Adap 98.4 1.8E-06 3.9E-11 79.4 9.6 80 635-719 2-84 (115)
37 KOG0166 Karyopherin (importin) 98.4 4E-05 8.8E-10 85.8 21.1 260 9-270 109-394 (514)
38 PF14764 SPG48: AP-5 complex s 98.3 0.00057 1.2E-08 75.8 28.1 128 371-502 291-455 (459)
39 KOG0213 Splicing factor 3b, su 98.3 0.00088 1.9E-08 76.2 28.5 101 47-147 477-583 (1172)
40 KOG1020 Sister chromatid cohes 98.1 0.0084 1.8E-07 73.9 35.6 160 22-186 793-956 (1692)
41 KOG1062 Vesicle coat complex A 98.1 0.0013 2.8E-08 76.1 25.8 175 87-272 76-266 (866)
42 KOG0213 Splicing factor 3b, su 98.0 0.0085 1.8E-07 68.6 29.9 421 15-490 642-1138(1172)
43 KOG2259 Uncharacterized conser 98.0 0.00067 1.4E-08 76.5 20.5 347 40-392 152-526 (823)
44 PF05918 API5: Apoptosis inhib 97.9 0.017 3.7E-07 66.3 31.2 192 10-204 24-225 (556)
45 PF13646 HEAT_2: HEAT repeats; 97.9 4.4E-05 9.5E-10 66.3 8.4 84 49-144 2-87 (88)
46 KOG4224 Armadillo repeat prote 97.9 0.00034 7.4E-09 73.5 15.9 255 14-271 90-365 (550)
47 COG5181 HSH155 U2 snRNP splice 97.9 0.0012 2.6E-08 73.7 20.6 435 48-491 283-870 (975)
48 PF14807 AP4E_app_platf: Adapt 97.8 0.00034 7.4E-09 61.7 12.3 101 753-861 2-104 (104)
49 PF05804 KAP: Kinesin-associat 97.8 0.0099 2.1E-07 70.7 26.9 320 48-415 292-652 (708)
50 PF12717 Cnd1: non-SMC mitotic 97.6 0.0012 2.7E-08 65.6 14.8 93 94-191 1-93 (178)
51 KOG1824 TATA-binding protein-i 97.6 0.013 2.9E-07 68.9 24.5 331 11-359 773-1152(1233)
52 PF04826 Arm_2: Armadillo-like 97.6 0.0033 7.1E-08 65.9 18.3 225 85-331 16-253 (254)
53 KOG1242 Protein containing ada 97.6 0.027 5.9E-07 64.1 26.3 266 2-271 127-446 (569)
54 KOG0915 Uncharacterized conser 97.6 0.051 1.1E-06 67.4 29.7 442 10-498 819-1352(1702)
55 KOG1077 Vesicle coat complex A 97.6 0.28 6E-06 56.6 37.8 349 27-394 61-453 (938)
56 KOG1824 TATA-binding protein-i 97.5 0.01 2.2E-07 69.8 21.9 290 21-338 831-1184(1233)
57 KOG1241 Karyopherin (importin) 97.5 0.35 7.6E-06 56.4 34.7 425 10-469 260-731 (859)
58 COG5181 HSH155 U2 snRNP splice 97.5 0.2 4.4E-06 56.7 29.9 309 4-359 436-776 (975)
59 PF05804 KAP: Kinesin-associat 97.5 0.03 6.4E-07 66.7 25.0 364 124-498 254-657 (708)
60 TIGR02270 conserved hypothetic 97.4 0.0072 1.6E-07 67.9 18.8 210 47-305 87-296 (410)
61 KOG0414 Chromosome condensatio 97.4 0.0008 1.7E-08 80.7 11.5 158 8-168 918-1082(1251)
62 KOG1241 Karyopherin (importin) 97.4 0.49 1.1E-05 55.2 36.5 410 38-465 82-543 (859)
63 KOG1020 Sister chromatid cohes 97.4 0.78 1.7E-05 57.5 38.2 466 11-490 818-1404(1692)
64 COG1413 FOG: HEAT repeat [Ener 97.3 0.012 2.6E-07 65.1 19.0 185 10-225 44-240 (335)
65 cd00020 ARM Armadillo/beta-cat 97.3 0.0007 1.5E-08 62.1 7.8 105 82-186 8-116 (120)
66 COG5215 KAP95 Karyopherin (imp 97.3 0.058 1.3E-06 60.4 23.3 432 14-469 226-731 (858)
67 KOG1242 Protein containing ada 97.3 0.23 5E-06 56.8 27.9 299 44-355 94-418 (569)
68 KOG0212 Uncharacterized conser 97.3 0.046 1E-06 61.2 21.7 281 54-336 175-476 (675)
69 TIGR02270 conserved hypothetic 97.2 0.023 4.9E-07 63.9 20.0 255 59-375 38-294 (410)
70 COG5240 SEC21 Vesicle coat com 97.2 0.36 7.8E-06 54.4 28.3 237 48-304 67-331 (898)
71 KOG1061 Vesicle coat complex A 97.2 0.021 4.7E-07 66.4 19.8 172 48-227 15-189 (734)
72 KOG2259 Uncharacterized conser 97.2 0.18 3.9E-06 57.7 25.9 401 43-486 118-546 (823)
73 PF12348 CLASP_N: CLASP N term 97.2 0.0055 1.2E-07 63.7 13.6 184 88-274 14-211 (228)
74 COG5215 KAP95 Karyopherin (imp 97.2 0.58 1.3E-05 52.8 28.8 108 10-117 322-444 (858)
75 COG5064 SRP1 Karyopherin (impo 97.1 0.046 1E-06 57.5 19.2 335 10-377 72-443 (526)
76 cd00020 ARM Armadillo/beta-cat 97.1 0.0011 2.4E-08 60.7 6.8 102 47-148 8-119 (120)
77 cd00256 VATPase_H VATPase_H, r 97.1 0.074 1.6E-06 59.7 22.0 283 163-452 103-426 (429)
78 COG5096 Vesicle coat complex, 97.0 0.55 1.2E-05 56.0 29.1 170 48-225 20-193 (757)
79 PF13646 HEAT_2: HEAT repeats; 97.0 0.0036 7.8E-08 54.1 8.7 83 84-184 2-86 (88)
80 KOG1078 Vesicle coat complex C 97.0 0.14 3.1E-06 59.6 23.1 121 322-451 403-531 (865)
81 COG1413 FOG: HEAT repeat [Ener 96.9 0.13 2.8E-06 56.8 22.3 209 46-316 43-253 (335)
82 COG5064 SRP1 Karyopherin (impo 96.9 0.07 1.5E-06 56.2 18.2 255 12-269 117-398 (526)
83 KOG4224 Armadillo repeat prote 96.9 0.48 1E-05 50.6 24.3 258 8-268 166-445 (550)
84 PF04826 Arm_2: Armadillo-like 96.8 0.034 7.5E-07 58.3 15.6 167 57-226 24-204 (254)
85 KOG0211 Protein phosphatase 2A 96.8 0.39 8.5E-06 57.7 25.7 407 76-490 232-663 (759)
86 KOG1240 Protein kinase contain 96.6 0.026 5.7E-07 68.2 14.1 208 8-226 506-724 (1431)
87 COG5098 Chromosome condensatio 96.5 0.022 4.7E-07 64.9 11.9 172 12-190 895-1076(1128)
88 PF12348 CLASP_N: CLASP N term 96.4 0.036 7.9E-07 57.5 12.4 130 19-151 17-162 (228)
89 KOG0168 Putative ubiquitin fus 96.3 0.23 4.9E-06 58.5 18.9 190 48-239 169-377 (1051)
90 KOG0946 ER-Golgi vesicle-tethe 96.3 1.8 3.9E-05 50.9 25.6 133 17-151 31-197 (970)
91 PF12755 Vac14_Fab1_bd: Vacuol 96.3 0.023 5.1E-07 50.0 8.5 67 75-141 21-89 (97)
92 PF02985 HEAT: HEAT repeat; I 96.2 0.0077 1.7E-07 40.9 4.1 30 82-111 1-30 (31)
93 PF13513 HEAT_EZ: HEAT-like re 96.2 0.014 3.1E-07 45.5 5.9 49 60-108 1-55 (55)
94 KOG1240 Protein kinase contain 96.2 0.26 5.6E-06 60.2 18.6 220 43-270 459-726 (1431)
95 PF14500 MMS19_N: Dos2-interac 96.2 0.93 2E-05 47.9 21.3 234 85-357 3-255 (262)
96 KOG0414 Chromosome condensatio 96.2 0.034 7.5E-07 67.3 11.5 93 56-150 933-1028(1251)
97 KOG1943 Beta-tubulin folding c 96.1 4.8 0.0001 49.2 28.8 241 75-356 335-590 (1133)
98 COG5098 Chromosome condensatio 96.1 0.049 1.1E-06 62.2 11.8 132 21-152 274-418 (1128)
99 PF05918 API5: Apoptosis inhib 96.1 0.53 1.1E-05 54.4 20.4 120 58-186 34-158 (556)
100 PF12719 Cnd3: Nuclear condens 95.8 0.41 8.9E-06 51.9 17.4 156 310-489 25-183 (298)
101 PF13513 HEAT_EZ: HEAT-like re 95.7 0.0091 2E-07 46.6 3.1 53 95-147 1-55 (55)
102 KOG2274 Predicted importin 9 [ 95.7 3 6.5E-05 50.0 24.1 223 76-305 444-689 (1005)
103 KOG0915 Uncharacterized conser 95.7 2 4.3E-05 54.2 23.6 265 8-280 1034-1355(1702)
104 KOG1820 Microtubule-associated 95.6 0.19 4.1E-06 60.8 14.7 196 76-273 248-447 (815)
105 KOG1525 Sister chromatid cohes 95.5 9.5 0.00021 48.7 29.2 200 290-491 236-472 (1266)
106 PF12460 MMS19_C: RNAPII trans 95.4 0.35 7.5E-06 55.1 15.8 226 24-280 163-405 (415)
107 PF08752 COP-gamma_platf: Coat 95.4 0.022 4.7E-07 54.2 4.9 109 638-749 30-147 (151)
108 PF12460 MMS19_C: RNAPII trans 95.4 4.5 9.6E-05 46.1 24.6 180 308-489 186-392 (415)
109 PF12830 Nipped-B_C: Sister ch 95.4 0.13 2.8E-06 51.5 10.8 102 48-150 10-123 (187)
110 KOG1822 Uncharacterized conser 94.5 3.1 6.7E-05 53.7 21.0 225 43-273 873-1131(2067)
111 KOG0413 Uncharacterized conser 94.5 2.5 5.3E-05 50.8 18.8 88 60-147 591-683 (1529)
112 KOG1248 Uncharacterized conser 94.5 4.4 9.4E-05 50.1 21.5 219 4-225 606-854 (1176)
113 PF12719 Cnd3: Nuclear condens 94.3 1.9 4E-05 46.8 17.1 106 45-150 26-144 (298)
114 KOG1517 Guanine nucleotide bin 94.0 1.3 2.8E-05 53.6 15.5 136 10-150 513-672 (1387)
115 KOG1248 Uncharacterized conser 94.0 22 0.00048 44.3 29.8 280 94-379 586-900 (1176)
116 smart00638 LPD_N Lipoprotein N 93.9 0.2 4.3E-06 59.8 9.2 95 47-147 447-543 (574)
117 KOG0211 Protein phosphatase 2A 93.9 2.4 5.3E-05 51.1 17.9 257 8-270 397-665 (759)
118 PF12755 Vac14_Fab1_bd: Vacuol 93.7 0.16 3.5E-06 44.8 5.9 80 97-176 2-83 (97)
119 PF10363 DUF2435: Protein of u 93.6 0.49 1.1E-05 41.3 8.7 67 86-152 8-75 (92)
120 KOG1949 Uncharacterized conser 93.6 1.2 2.6E-05 51.6 13.9 139 44-188 172-329 (1005)
121 KOG2160 Armadillo/beta-catenin 92.9 2.8 6E-05 45.3 14.8 132 18-151 92-242 (342)
122 KOG2213 Apoptosis inhibitor 5/ 92.8 17 0.00038 39.7 26.3 78 13-91 29-106 (460)
123 PF10363 DUF2435: Protein of u 92.4 0.42 9.2E-06 41.6 6.6 69 48-116 5-78 (92)
124 PF14664 RICTOR_N: Rapamycin-i 92.1 11 0.00024 42.1 18.9 207 248-455 33-273 (371)
125 KOG2025 Chromosome condensatio 91.6 34 0.00074 40.4 30.2 90 51-144 90-188 (892)
126 PF05536 Neurochondrin: Neuroc 91.3 37 0.0008 40.1 26.5 238 6-271 2-263 (543)
127 PF08167 RIX1: rRNA processing 91.2 1.2 2.7E-05 43.5 9.2 124 120-279 25-153 (165)
128 PF12231 Rif1_N: Rap1-interact 91.2 25 0.00054 39.4 20.7 202 18-221 2-297 (372)
129 PF08713 DNA_alkylation: DNA a 91.1 0.46 1E-05 48.6 6.4 131 13-152 55-187 (213)
130 KOG4413 26S proteasome regulat 91.0 25 0.00053 37.6 23.9 210 16-225 89-331 (524)
131 KOG1943 Beta-tubulin folding c 90.6 53 0.0011 40.8 37.6 413 4-452 332-788 (1133)
132 KOG2956 CLIP-associating prote 90.5 12 0.00026 41.9 16.6 180 94-280 300-489 (516)
133 PF05004 IFRD: Interferon-rela 90.5 20 0.00043 39.0 18.5 187 83-270 45-258 (309)
134 KOG1222 Kinesin associated pro 90.4 35 0.00075 38.4 24.3 99 288-387 517-630 (791)
135 KOG2025 Chromosome condensatio 90.4 3.1 6.7E-05 48.5 12.4 137 7-146 83-256 (892)
136 KOG2160 Armadillo/beta-catenin 90.3 2.2 4.8E-05 46.1 10.6 108 84-192 127-242 (342)
137 PF02985 HEAT: HEAT repeat; I 90.1 0.6 1.3E-05 31.5 4.1 30 121-150 1-30 (31)
138 PF01347 Vitellogenin_N: Lipop 89.6 0.68 1.5E-05 55.8 7.1 99 43-147 487-587 (618)
139 KOG0567 HEAT repeat-containing 88.9 3.7 8.1E-05 42.5 10.4 89 47-147 188-278 (289)
140 KOG4413 26S proteasome regulat 88.9 36 0.00078 36.4 26.8 148 75-225 76-241 (524)
141 KOG1293 Proteins containing ar 88.9 18 0.00039 42.2 16.9 172 53-225 338-531 (678)
142 KOG1949 Uncharacterized conser 88.7 36 0.00077 40.1 18.9 207 205-414 181-405 (1005)
143 PF13251 DUF4042: Domain of un 88.3 5 0.00011 39.8 10.8 155 97-272 2-177 (182)
144 smart00638 LPD_N Lipoprotein N 88.2 21 0.00046 42.6 18.4 74 253-329 493-567 (574)
145 PF11698 V-ATPase_H_C: V-ATPas 86.9 1.5 3.3E-05 39.9 5.8 67 385-451 43-115 (119)
146 KOG4500 Rho/Rac GTPase guanine 86.7 47 0.001 37.0 17.6 262 12-273 226-523 (604)
147 PF10633 NPCBM_assoc: NPCBM-as 86.7 0.97 2.1E-05 38.0 4.2 61 657-718 4-65 (78)
148 KOG1991 Nuclear transport rece 86.7 90 0.002 38.5 27.0 170 259-428 391-591 (1010)
149 KOG1525 Sister chromatid cohes 86.2 1.2E+02 0.0025 39.4 25.3 187 205-397 266-473 (1266)
150 KOG2062 26S proteasome regulat 86.0 2.5 5.4E-05 49.5 8.1 160 13-184 523-693 (929)
151 PF14664 RICTOR_N: Rapamycin-i 85.7 5.2 0.00011 44.6 10.5 138 11-150 27-177 (371)
152 cd06561 AlkD_like A new struct 85.3 9.2 0.0002 38.4 11.4 107 41-152 53-173 (197)
153 PF01603 B56: Protein phosphat 84.9 34 0.00073 38.9 16.7 187 315-502 137-343 (409)
154 KOG1992 Nuclear export recepto 84.2 1E+02 0.0022 37.3 19.9 240 42-328 452-716 (960)
155 PF12830 Nipped-B_C: Sister ch 84.0 9.2 0.0002 38.2 10.4 134 309-454 6-143 (187)
156 KOG2213 Apoptosis inhibitor 5/ 83.7 75 0.0016 35.0 18.1 63 259-321 43-106 (460)
157 COG5218 YCG1 Chromosome conden 83.0 1E+02 0.0022 35.9 27.1 125 25-151 28-163 (885)
158 PLN03076 ARF guanine nucleotid 82.7 1.5E+02 0.0032 40.1 23.0 128 22-150 1110-1254(1780)
159 KOG2933 Uncharacterized conser 82.7 8.5 0.00019 40.8 9.6 120 27-150 71-200 (334)
160 PF12765 Cohesin_HEAT: HEAT re 82.2 1.9 4E-05 31.5 3.4 39 104-142 2-40 (42)
161 KOG2956 CLIP-associating prote 81.7 51 0.0011 37.2 15.5 162 289-454 300-480 (516)
162 PF11698 V-ATPase_H_C: V-ATPas 81.2 4.5 9.8E-05 36.9 6.2 69 82-150 44-116 (119)
163 KOG0168 Putative ubiquitin fus 81.2 39 0.00085 40.7 15.1 142 309-451 209-364 (1051)
164 KOG2759 Vacuolar H+-ATPase V1 80.2 1E+02 0.0023 34.3 27.6 352 58-451 62-438 (442)
165 KOG0413 Uncharacterized conser 80.2 9.6 0.00021 46.1 9.9 125 25-152 947-1076(1529)
166 KOG2032 Uncharacterized conser 80.1 21 0.00045 40.3 12.0 127 51-177 263-403 (533)
167 PF12530 DUF3730: Protein of u 79.8 81 0.0017 32.7 16.7 146 56-208 11-169 (234)
168 KOG0567 HEAT repeat-containing 79.6 3 6.5E-05 43.1 5.0 57 48-108 220-278 (289)
169 COG1470 Predicted membrane pro 79.2 5.8 0.00013 44.3 7.4 73 657-732 396-469 (513)
170 PF14500 MMS19_N: Dos2-interac 79.0 81 0.0018 33.4 15.9 29 124-152 3-31 (262)
171 PF11864 DUF3384: Domain of un 78.7 1.3E+02 0.0029 34.7 35.3 190 294-485 233-460 (464)
172 KOG2062 26S proteasome regulat 78.4 50 0.0011 39.3 14.6 136 4-151 479-620 (929)
173 cd03569 VHS_Hrs_Vps27p VHS dom 78.3 24 0.00051 33.6 10.5 94 17-110 12-114 (142)
174 PF08713 DNA_alkylation: DNA a 78.1 2.8 6.1E-05 42.7 4.6 68 51-118 125-192 (213)
175 PF08167 RIX1: rRNA processing 77.8 26 0.00056 34.2 11.0 105 47-153 26-147 (165)
176 PF14676 FANCI_S2: FANCI solen 77.7 18 0.00039 35.0 9.6 111 370-483 40-153 (158)
177 COG5116 RPN2 26S proteasome re 77.7 29 0.00063 39.8 12.2 120 20-152 493-618 (926)
178 PF01347 Vitellogenin_N: Lipop 77.7 40 0.00088 40.5 15.1 193 289-494 377-590 (618)
179 PF00790 VHS: VHS domain; Int 77.6 10 0.00022 35.9 7.8 95 16-110 12-118 (140)
180 PF07718 Coatamer_beta_C: Coat 77.1 11 0.00024 35.3 7.6 68 647-715 58-125 (140)
181 KOG4653 Uncharacterized conser 77.1 1.8E+02 0.004 35.5 18.9 73 81-153 727-801 (982)
182 KOG1243 Protein kinase [Genera 77.0 2.9 6.3E-05 48.9 4.6 99 11-109 332-436 (690)
183 COG5116 RPN2 26S proteasome re 76.7 11 0.00024 42.9 8.7 128 11-148 517-649 (926)
184 KOG1991 Nuclear transport rece 76.6 2E+02 0.0044 35.6 28.8 116 57-174 429-560 (1010)
185 cd03561 VHS VHS domain family; 76.0 29 0.00064 32.4 10.4 91 24-114 15-116 (133)
186 PF08389 Xpo1: Exportin 1-like 75.9 33 0.00072 32.2 11.1 51 95-148 2-53 (148)
187 PF11865 DUF3385: Domain of un 75.4 16 0.00034 35.6 8.6 135 39-185 7-152 (160)
188 PF12074 DUF3554: Domain of un 75.2 60 0.0013 35.8 14.4 68 43-110 19-90 (339)
189 PF03224 V-ATPase_H_N: V-ATPas 75.1 63 0.0014 35.2 14.3 134 131-268 68-226 (312)
190 KOG0946 ER-Golgi vesicle-tethe 74.2 2.1E+02 0.0045 34.7 19.8 130 241-384 61-202 (970)
191 PF13001 Ecm29: Proteasome sta 74.0 53 0.0012 38.4 14.1 167 130-304 247-442 (501)
192 PF11935 DUF3453: Domain of un 73.8 35 0.00075 35.6 11.3 126 89-225 1-143 (239)
193 PF05004 IFRD: Interferon-rela 73.3 1E+02 0.0022 33.5 15.2 98 11-108 45-158 (309)
194 KOG4653 Uncharacterized conser 72.5 84 0.0018 38.2 14.7 63 54-116 735-803 (982)
195 PF14631 FancD2: Fanconi anaem 72.3 3.4E+02 0.0073 36.2 27.4 125 199-330 436-573 (1426)
196 smart00288 VHS Domain present 72.0 46 0.001 31.1 10.6 94 18-111 9-112 (133)
197 cd06561 AlkD_like A new struct 71.3 4.7 0.0001 40.5 4.1 68 55-124 114-182 (197)
198 PF13001 Ecm29: Proteasome sta 71.1 15 0.00032 43.0 8.7 126 20-148 296-442 (501)
199 PF00514 Arm: Armadillo/beta-c 70.1 6.6 0.00014 28.2 3.5 30 119-148 11-40 (41)
200 PF02854 MIF4G: MIF4G domain; 69.4 86 0.0019 31.1 13.0 77 296-372 3-79 (209)
201 PF03224 V-ATPase_H_N: V-ATPas 69.3 22 0.00048 38.7 9.1 143 4-147 53-225 (312)
202 KOG1048 Neural adherens juncti 69.2 2.4E+02 0.0052 34.1 17.6 68 83-150 235-305 (717)
203 KOG2933 Uncharacterized conser 69.1 24 0.00052 37.6 8.5 141 82-225 89-232 (334)
204 PF08506 Cse1: Cse1; InterPro 68.8 9.5 0.00021 42.6 6.1 63 43-105 302-370 (370)
205 PF12765 Cohesin_HEAT: HEAT re 68.7 6 0.00013 28.9 3.0 25 80-104 17-41 (42)
206 PF08506 Cse1: Cse1; InterPro 68.6 64 0.0014 36.0 12.5 135 85-220 214-368 (370)
207 COG5218 YCG1 Chromosome conden 68.6 2.4E+02 0.0052 33.0 20.1 104 198-303 49-159 (885)
208 PF00514 Arm: Armadillo/beta-c 68.0 10 0.00022 27.2 4.2 28 82-109 13-40 (41)
209 KOG1967 DNA repair/transcripti 66.1 37 0.0008 41.3 10.2 170 51-225 801-980 (1030)
210 cd00238 ERp29c ERp29 and ERp38 65.7 48 0.001 28.9 8.6 59 318-378 10-72 (93)
211 PF13251 DUF4042: Domain of un 65.5 39 0.00084 33.6 9.0 119 25-149 18-174 (182)
212 PF08623 TIP120: TATA-binding 65.2 17 0.00036 35.6 6.2 59 93-152 39-97 (169)
213 cd03568 VHS_STAM VHS domain fa 64.9 72 0.0016 30.4 10.4 84 27-110 18-110 (144)
214 PF12074 DUF3554: Domain of un 64.6 2.2E+02 0.0049 31.2 17.3 110 61-171 2-113 (339)
215 KOG4500 Rho/Rac GTPase guanine 63.6 2.6E+02 0.0055 31.5 19.1 100 118-218 313-422 (604)
216 KOG2274 Predicted importin 9 [ 62.7 3.8E+02 0.0081 33.2 27.5 226 41-272 444-692 (1005)
217 PF10274 ParcG: Parkin co-regu 62.4 72 0.0016 31.6 10.1 88 81-170 38-129 (183)
218 cd07064 AlkD_like_1 A new stru 61.3 88 0.0019 31.8 11.0 66 84-153 118-183 (208)
219 KOG1820 Microtubule-associated 60.7 84 0.0018 38.7 12.3 132 20-151 306-445 (815)
220 PF10274 ParcG: Parkin co-regu 59.4 27 0.00058 34.6 6.5 52 77-130 76-127 (183)
221 PF14806 Coatomer_b_Cpla: Coat 58.3 86 0.0019 29.2 9.1 98 752-852 19-124 (129)
222 PF07749 ERp29: Endoplasmic re 57.3 55 0.0012 28.7 7.5 59 318-378 12-74 (95)
223 KOG1243 Protein kinase [Genera 57.2 3.7E+02 0.0079 32.3 16.0 142 8-150 250-399 (690)
224 cd03567 VHS_GGA VHS domain fam 56.7 93 0.002 29.4 9.5 53 99-154 19-71 (139)
225 PF14631 FancD2: Fanconi anaem 55.6 6.5E+02 0.014 33.7 24.8 96 120-224 192-288 (1426)
226 PF11701 UNC45-central: Myosin 55.3 57 0.0012 31.5 8.1 55 92-147 16-70 (157)
227 cd03572 ENTH_epsin_related ENT 55.1 15 0.00034 33.7 3.8 43 75-117 32-74 (122)
228 PF11614 FixG_C: IG-like fold 54.4 22 0.00048 32.4 4.8 68 661-731 34-101 (118)
229 PF10521 DUF2454: Protein of u 53.7 1.8E+02 0.0039 31.1 12.4 74 76-149 114-203 (282)
230 KOG4524 Uncharacterized conser 53.3 5.2E+02 0.011 32.3 16.7 54 58-111 560-619 (1014)
231 PF05327 RRN3: RNA polymerase 51.8 2.1E+02 0.0045 34.1 13.6 54 414-468 153-209 (563)
232 cd00197 VHS_ENTH_ANTH VHS, ENT 51.2 94 0.002 28.0 8.5 65 86-152 5-69 (115)
233 KOG2973 Uncharacterized conser 50.9 1.5E+02 0.0032 31.9 10.5 53 434-490 256-314 (353)
234 PF12530 DUF3730: Protein of u 50.5 3.1E+02 0.0067 28.4 18.3 133 17-151 9-153 (234)
235 cd03568 VHS_STAM VHS domain fa 49.5 1E+02 0.0022 29.4 8.6 52 100-154 19-70 (144)
236 KOG2081 Nuclear transport regu 49.4 4.9E+02 0.011 30.4 25.4 98 326-425 367-467 (559)
237 PF03896 TRAP_alpha: Transloco 49.4 1E+02 0.0022 32.9 9.4 76 659-734 100-181 (285)
238 PF09759 Atx10homo_assoc: Spin 48.6 96 0.0021 27.6 7.6 62 439-502 3-70 (102)
239 KOG2137 Protein kinase [Signal 47.3 4E+02 0.0086 32.1 14.3 205 251-455 284-500 (700)
240 PF03130 HEAT_PBS: PBS lyase H 47.0 27 0.00059 22.6 3.0 25 62-86 1-25 (27)
241 KOG2038 CAATT-binding transcri 46.7 6.2E+02 0.013 30.8 15.9 126 19-149 280-409 (988)
242 KOG2199 Signal transducing ada 46.5 1.3E+02 0.0029 33.1 9.6 94 11-104 10-112 (462)
243 PF00790 VHS: VHS domain; Int 46.4 1.4E+02 0.0031 28.1 9.1 64 86-151 10-73 (140)
244 KOG1517 Guanine nucleotide bin 46.3 79 0.0017 39.3 8.6 97 14-110 604-732 (1387)
245 PF08569 Mo25: Mo25-like; Int 46.1 4.4E+02 0.0096 29.0 18.4 229 78-338 73-333 (335)
246 PF09759 Atx10homo_assoc: Spin 45.7 61 0.0013 28.8 5.9 60 327-386 2-68 (102)
247 cd03561 VHS VHS domain family; 45.2 1.1E+02 0.0024 28.6 8.1 51 99-151 18-68 (133)
248 KOG4535 HEAT and armadillo rep 44.7 25 0.00055 39.5 4.0 129 18-149 21-179 (728)
249 PF11841 DUF3361: Domain of un 44.7 3E+02 0.0066 26.7 13.7 103 123-226 14-130 (160)
250 COG5110 RPN1 26S proteasome re 44.6 1.1E+02 0.0024 35.2 8.9 88 58-149 616-705 (881)
251 KOG0889 Histone acetyltransfer 44.5 1.3E+03 0.027 33.8 22.9 51 77-129 1122-1172(3550)
252 KOG2149 Uncharacterized conser 44.4 2.2E+02 0.0048 31.7 11.1 69 84-152 61-131 (393)
253 PF09324 DUF1981: Domain of un 43.7 87 0.0019 26.8 6.5 65 80-145 16-84 (86)
254 PF11838 ERAP1_C: ERAP1-like C 43.5 2.9E+02 0.0064 29.7 12.5 45 289-336 168-212 (324)
255 KOG2140 Uncharacterized conser 42.8 2.5E+02 0.0055 32.3 11.3 24 295-318 166-189 (739)
256 cd03569 VHS_Hrs_Vps27p VHS dom 42.5 2.2E+02 0.0047 27.0 9.7 65 86-153 9-73 (142)
257 cd08050 TAF6 TATA Binding Prot 42.5 2.7E+02 0.0059 30.7 11.9 143 5-148 174-339 (343)
258 smart00185 ARM Armadillo/beta- 41.7 35 0.00076 23.8 3.3 28 120-147 12-39 (41)
259 KOG2137 Protein kinase [Signal 41.1 7.2E+02 0.016 30.0 19.4 52 289-340 442-496 (700)
260 PF07539 DRIM: Down-regulated 40.7 60 0.0013 30.8 5.5 49 79-132 15-63 (141)
261 KOG2011 Sister chromatid cohes 40.5 2.1E+02 0.0045 36.1 11.3 55 252-306 299-356 (1048)
262 KOG2759 Vacuolar H+-ATPase V1 40.0 49 0.0011 36.8 5.3 70 81-150 366-439 (442)
263 KOG4524 Uncharacterized conser 39.9 2.3E+02 0.0051 35.1 11.2 75 77-152 799-879 (1014)
264 smart00185 ARM Armadillo/beta- 39.7 47 0.001 23.1 3.7 28 82-109 13-40 (41)
265 KOG2005 26S proteasome regulat 39.7 1.7E+02 0.0037 34.7 9.6 83 60-149 622-704 (878)
266 PF10521 DUF2454: Protein of u 38.7 1.5E+02 0.0031 31.8 8.8 39 234-272 112-151 (282)
267 PF03378 CAS_CSE1: CAS/CSE pro 38.1 6.7E+02 0.014 28.7 18.2 156 159-327 24-194 (435)
268 KOG4199 Uncharacterized conser 38.1 5.7E+02 0.012 28.0 22.9 76 50-131 81-156 (461)
269 KOG2973 Uncharacterized conser 38.1 1.1E+02 0.0024 32.8 7.3 65 84-150 6-72 (353)
270 PF07571 DUF1546: Protein of u 37.9 1.2E+02 0.0025 26.4 6.5 59 91-149 16-78 (92)
271 PF12397 U3snoRNP10: U3 small 36.9 3.2E+02 0.007 24.7 10.6 108 41-170 1-116 (121)
272 PLN03076 ARF guanine nucleotid 36.4 1.1E+03 0.025 32.2 17.7 135 208-342 1147-1301(1780)
273 KOG4535 HEAT and armadillo rep 36.4 3.5E+02 0.0077 30.9 11.1 162 91-271 6-181 (728)
274 cd03567 VHS_GGA VHS domain fam 36.1 3.8E+02 0.0082 25.3 10.5 82 28-109 20-115 (139)
275 smart00567 EZ_HEAT E-Z type HE 35.9 38 0.00082 22.3 2.5 23 61-83 2-24 (30)
276 PF14676 FANCI_S2: FANCI solen 35.0 2.2E+02 0.0047 27.6 8.4 49 100-151 37-86 (158)
277 KOG2038 CAATT-binding transcri 34.4 9.4E+02 0.02 29.4 17.0 71 81-153 304-374 (988)
278 KOG1967 DNA repair/transcripti 34.3 1E+03 0.022 29.8 22.0 74 285-358 226-303 (1030)
279 cd08050 TAF6 TATA Binding Prot 34.1 6E+02 0.013 28.0 12.9 60 57-116 189-251 (343)
280 PF10165 Ric8: Guanine nucleot 33.6 6.3E+02 0.014 29.0 13.5 62 208-272 42-111 (446)
281 PF07705 CARDB: CARDB; InterP 33.4 49 0.0011 28.6 3.5 55 657-714 18-72 (101)
282 smart00288 VHS Domain present 33.2 2.5E+02 0.0054 26.2 8.4 49 100-150 19-67 (133)
283 KOG2141 Protein involved in hi 32.7 9.7E+02 0.021 29.0 15.8 82 405-490 432-514 (822)
284 KOG2286 Exocyst complex subuni 32.5 2.9E+02 0.0063 33.2 10.5 67 338-404 576-642 (667)
285 PF13981 SopA: SopA-like centr 32.3 1.4E+02 0.003 28.1 6.4 52 435-489 66-121 (135)
286 KOG0891 DNA-dependent protein 31.7 1.1E+03 0.025 33.1 16.8 267 65-339 463-762 (2341)
287 PF11707 Npa1: Ribosome 60S bi 31.4 7.3E+02 0.016 27.1 15.0 55 213-268 129-186 (330)
288 PF07610 DUF1573: Protein of u 31.0 92 0.002 22.9 4.1 42 664-709 2-43 (45)
289 KOG2011 Sister chromatid cohes 30.5 5E+02 0.011 33.0 12.2 108 40-147 276-397 (1048)
290 PF12231 Rif1_N: Rap1-interact 30.4 8E+02 0.017 27.4 20.0 112 252-378 146-263 (372)
291 PF03378 CAS_CSE1: CAS/CSE pro 30.1 8.9E+02 0.019 27.7 13.8 172 48-225 32-230 (435)
292 cd00197 VHS_ENTH_ANTH VHS, ENT 29.7 3.3E+02 0.0072 24.4 8.5 52 22-73 13-64 (115)
293 PF00927 Transglut_C: Transglu 29.4 45 0.00097 29.7 2.6 60 657-716 14-79 (107)
294 PF05327 RRN3: RNA polymerase 29.3 9.8E+02 0.021 28.4 14.5 96 304-400 67-177 (563)
295 KOG2153 Protein involved in th 29.1 9.2E+02 0.02 28.8 13.2 42 69-110 198-239 (704)
296 PF12333 Ipi1_N: Rix1 complex 28.9 1.2E+02 0.0026 26.9 5.2 50 78-127 8-57 (102)
297 PF08631 SPO22: Meiosis protei 28.2 7.4E+02 0.016 26.2 16.4 100 255-355 81-185 (278)
298 KOG2051 Nonsense-mediated mRNA 28.2 1.3E+03 0.029 29.2 16.8 80 403-484 522-607 (1128)
299 smart00543 MIF4G Middle domain 28.2 5.7E+02 0.012 25.0 15.5 48 300-349 8-55 (200)
300 PF04388 Hamartin: Hamartin pr 27.6 2.1E+02 0.0046 34.7 8.6 101 46-152 39-143 (668)
301 PF00635 Motile_Sperm: MSP (Ma 27.3 1.5E+02 0.0032 26.1 5.7 48 658-710 18-66 (109)
302 COG4912 Predicted DNA alkylati 26.5 1.8E+02 0.0038 29.7 6.3 57 91-150 128-184 (222)
303 PF08568 Kinetochor_Ybp2: Unch 26.3 5.9E+02 0.013 30.8 12.1 64 81-148 442-506 (633)
304 PF11707 Npa1: Ribosome 60S bi 26.3 8.8E+02 0.019 26.5 12.6 98 49-146 59-184 (330)
305 KOG1988 Uncharacterized conser 26.3 8.1E+02 0.017 30.3 12.4 89 57-148 113-205 (970)
306 KOG1992 Nuclear export recepto 25.9 1.3E+03 0.029 28.4 33.1 117 12-129 40-174 (960)
307 KOG3252 Uncharacterized conser 25.6 1.7E+02 0.0038 28.7 5.8 49 68-118 12-62 (217)
308 PF08389 Xpo1: Exportin 1-like 25.4 1.2E+02 0.0026 28.3 5.0 55 80-134 81-140 (148)
309 PF00613 PI3Ka: Phosphoinositi 24.8 2E+02 0.0044 28.6 6.5 93 23-130 27-121 (184)
310 PF11841 DUF3361: Domain of un 24.8 6.5E+02 0.014 24.4 10.9 106 96-203 32-145 (160)
311 KOG1993 Nuclear transport rece 24.8 1.4E+03 0.03 28.2 20.4 305 80-454 430-772 (978)
312 cd03572 ENTH_epsin_related ENT 24.6 3.5E+02 0.0077 24.9 7.5 48 180-227 20-67 (122)
313 KOG2374 Uncharacterized conser 24.3 2.7E+02 0.0059 31.7 7.7 85 308-395 7-91 (661)
314 KOG2032 Uncharacterized conser 23.9 1.2E+03 0.025 27.1 20.1 143 80-223 257-411 (533)
315 PF06857 ACP: Malonate decarbo 23.5 1.9E+02 0.0041 25.0 5.1 45 816-861 8-53 (87)
316 KOG2549 Transcription initiati 23.5 4.4E+02 0.0096 30.7 9.4 71 79-149 286-370 (576)
317 PF07539 DRIM: Down-regulated 23.4 97 0.0021 29.4 3.8 45 48-93 19-63 (141)
318 PF14874 PapD-like: Flagellar- 23.4 4.9E+02 0.011 22.5 9.4 53 657-712 19-72 (102)
319 PF01603 B56: Protein phosphat 23.3 1.1E+03 0.024 26.6 22.9 90 61-150 109-205 (409)
320 PTZ00479 RAP Superfamily; Prov 23.1 1.1E+03 0.023 26.8 12.0 75 133-211 59-133 (435)
321 COG5066 SCS2 VAMP-associated p 23.0 2E+02 0.0043 29.0 5.7 89 662-771 21-109 (242)
322 KOG1048 Neural adherens juncti 22.6 9.1E+02 0.02 29.4 12.1 108 92-200 530-651 (717)
323 KOG1293 Proteins containing ar 22.3 1.4E+03 0.03 27.4 33.4 89 323-412 389-487 (678)
324 KOG3723 PH domain protein Melt 22.2 6.3E+02 0.014 29.5 10.1 60 375-434 226-286 (851)
325 cd07064 AlkD_like_1 A new stru 22.2 2E+02 0.0044 29.1 6.2 65 56-123 125-190 (208)
326 KOG1566 Conserved protein Mo25 22.1 4.5E+02 0.0097 28.5 8.5 139 25-191 169-315 (342)
327 PF11865 DUF3385: Domain of un 21.9 4.4E+02 0.0095 25.5 8.1 31 246-276 15-47 (160)
328 PF14837 INTS5_N: Integrator c 21.7 8.4E+02 0.018 24.9 10.1 31 311-341 3-33 (213)
329 PF06483 ChiC: Chitinase C; I 21.6 3.6E+02 0.0079 26.5 7.2 41 697-745 126-166 (180)
330 COG5369 Uncharacterized conser 21.6 3.1E+02 0.0067 31.8 7.6 138 81-218 431-585 (743)
331 KOG2611 Neurochondrin/leucine- 21.5 1.2E+03 0.025 27.0 11.8 133 92-224 73-222 (698)
332 PF11701 UNC45-central: Myosin 21.4 1.6E+02 0.0035 28.4 5.0 92 58-149 17-117 (157)
333 cd00871 PI4Ka Phosphoinositide 21.3 1.6E+02 0.0034 29.1 4.8 32 94-130 84-115 (175)
334 cd00872 PI3Ka_I Phosphoinositi 21.1 3.5E+02 0.0077 26.5 7.2 93 23-130 21-115 (171)
335 smart00802 UME Domain in UVSB 20.7 6.2E+02 0.013 22.7 9.0 35 324-358 28-62 (107)
336 COG5593 Nucleic-acid-binding p 20.5 1.1E+03 0.024 27.3 11.5 54 251-307 168-222 (821)
No 1
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.1e-107 Score=878.18 Aligned_cols=809 Identities=18% Similarity=0.245 Sum_probs=643.3
Q ss_pred CCCCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHH
Q 002971 3 VGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYL 82 (862)
Q Consensus 3 ~G~dvs~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l 82 (862)
+|+|+.|++++.+++++|+.|++|.+|||+++.+.++++|++.|++|+++|||.|+||...+|||.++++|+..+|++.+
T Consensus 68 lg~dIdFGhmEaV~LLss~kysEKqIGYl~is~L~n~n~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~ 147 (938)
T KOG1077|consen 68 LGYDIDFGHMEAVNLLSSNKYSEKQIGYLFISLLLNENSDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAF 147 (938)
T ss_pred hcCccccchHHHHHHhhcCCccHHHHhHHHHHHHHhcchHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCC--CChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccH
Q 002971 83 CDPLQRCLKD--DDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (862)
Q Consensus 83 ~~~v~~~l~d--~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~ 160 (862)
.++|.|+|.+ +.+||||+||+|++++||..||++...+|.+++..+|+|+|.+|+.++..++.-|++..++.+..-.+
T Consensus 148 ~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~ 227 (938)
T KOG1077|consen 148 ADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP 227 (938)
T ss_pred hhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH
Confidence 9999999986 78999999999999999999999998899999999999999999999999999999988765433334
Q ss_pred HHHHHHHHHhc-------------cCChhHHHHHHHHHhhccccc-HHHH---HHHHHHHHHhh---------cCCC--h
Q 002971 161 HTLSKLLTALN-------------ECTEWGQVFILDALSRYKAAD-AREA---ENIVERVTPRL---------QHAN--C 212 (862)
Q Consensus 161 ~~~~~Ll~~l~-------------~~~~w~q~~iL~~L~~~~~~~-~~~~---~~il~~v~~~l---------~~~n--~ 212 (862)
..+.+|.+... -++||+|++++++|+.|.+.+ +... .++++.++... +|+| .
T Consensus 228 ~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~n 307 (938)
T KOG1077|consen 228 LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKN 307 (938)
T ss_pred HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHH
Confidence 44555544431 258999999999999996543 2222 23444444322 3444 4
Q ss_pred HHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhCh--hhhhccce-EEEecC-C
Q 002971 213 AVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRP--TILAHEIK-VFFCKY-N 287 (862)
Q Consensus 213 aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p--~~~~~~~~-~~~~l~-~ 287 (862)
||+|||+++++++ + ++++++.. ....|+.++ ++++|+||++|+++.+++...+ +.+++|.. +|..+. +
T Consensus 308 aVLFeaI~l~~h~-D--~e~~ll~~----~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkte 380 (938)
T KOG1077|consen 308 AVLFEAISLAIHL-D--SEPELLSR----AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTE 380 (938)
T ss_pred HHHHHHHHHHHHc-C--CcHHHHHH----HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccc
Confidence 9999999999997 3 46666664 445577788 5899999999999999998765 45777866 566666 8
Q ss_pred CcHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhcchhHHH
Q 002971 288 DPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQE 367 (862)
Q Consensus 288 d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e 367 (862)
.|.+||++++|+||.|||.+|++.||+||+.|+.++|..+|++++.+++.+|+||+++.+||||++++|++.+|+|+.+|
T Consensus 381 rDvSirrravDLLY~mcD~~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsde 460 (938)
T KOG1077|consen 381 RDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDE 460 (938)
T ss_pred cchHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCcccHHHHHHHHHHhhccCCchHH-HHHHHHHHhhcccccCC-----HHHHHHHHhhhCCCCCHHHHHH
Q 002971 368 AIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEA-KASMIWIIGEYAERIDN-----ADELLESFLESFPEEPAQVQLQ 441 (862)
Q Consensus 368 ~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~-~~~~~wilGEy~~~i~~-----~~~~l~~~~~~~~~e~~~v~~~ 441 (862)
+|.++.+|+.++++.|.++.+++++++....-.+. ..+..||+||||++|.+ +...+..+.++|+.+++.+|+.
T Consensus 461 VW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~l 540 (938)
T KOG1077|consen 461 VWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRAL 540 (938)
T ss_pred HHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHH
Confidence 99999999999999999999999999864222222 23557999999999975 6789999999999999999999
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHhcccCCCChHHHHHHHHHHHHhcCCHHHHHHhhccCCCCCCCCCccCChhHHHH
Q 002971 442 LLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDE 521 (862)
Q Consensus 442 iLta~~Kl~~~~~~~~~~~~i~~~l~~~~~~s~~~dvrdRA~~y~~ll~~~~~~~~~~v~~~~p~~~~~~~~~~~~ll~~ 521 (862)
+||+.+||+..+|+ .++.|+++|+.. .+..|+|+||||+||+.|.....-.+.++|+++||||.++. +.++.+
T Consensus 541 LLtTyiKl~nl~PE--i~~~v~~vFq~~-~n~~D~ElQqRa~EYLql~k~as~dvL~~vleeMPpF~er~----ssll~k 613 (938)
T KOG1077|consen 541 LLTTYIKLINLFPE--IKSNVQKVFQLY-SNLIDVELQQRAVEYLQLSKLASTDVLQTVLEEMPPFPERE----SSLLKK 613 (938)
T ss_pred HHHHHHHHHhhChh--hhHHHHHHHHhh-cccCCHHHHHHHHHHHHHHHhccchHHHHHHhhCCCCcccc----chHHHH
Confidence 99999999999997 799999999975 56799999999999999998765567888999999998875 578887
Q ss_pred HHHhcCcccccccCCcchhcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCC-CCCCCC--
Q 002971 522 LLANIATLSSVYHKPPEAFVTRVKTTASRTDDEDYPNGSEQGYSDAPTHVADEGASPQTSSSN-APYAATR-QPAPPP-- 597 (862)
Q Consensus 522 l~~~~~~~~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~-- 597 (862)
|.+. ||+..-.+..+... ...+..+..++++++.-.- .+..+.. -|+.|+
T Consensus 614 l~~~---------~~~~~~l~~~~~~~-----------------~~~~~~~~~~~~tp~~v~~~s~st~~~~v~~~p~~n 667 (938)
T KOG1077|consen 614 LKKK---------KPSAISLRAGAGPK-----------------TLANPPPVASEPTPSKVSKRSNSTDPLSVPSPPPPN 667 (938)
T ss_pred hhcc---------CCchhccccccCCc-----------------ccCCCCcccCCCCcccccCCCCCCCcccCCCCCCCC
Confidence 6432 33221111110000 0000000001111110000 0001111 111111
Q ss_pred CCCCCCCCCCccccccc----CCCCCCcccCCCCCCCCC--CCccccccCCCCCceEEEEEEEeeCCeeEEEEEEEecCC
Q 002971 598 AAPVSPPVPDLLGDLIG----LDNSAAIVPADQAAASPV--PALPVVLPASTGQGLQIGAELTRQDGQVFYSMLFENNTQ 671 (862)
Q Consensus 598 ~~~~~~~~~~~~~dl~~----~~~~~~~~p~~~~~~~~~--~~~~~l~~~~~~~gL~I~~~~~~~~~~~~l~l~~~N~s~ 671 (862)
.+.++.+......|+|+ ..+.+.+.++|.-++.++ .+.|+++++ ..+||+++.+.+++++++.++|+|+++
T Consensus 668 ~t~~~~~~~~~~~di~s~~~~~~s~~~~p~~~~~~f~r~~~k~~GVLfed---~~iQIgvk~e~r~~~grl~LfygNkts 744 (938)
T KOG1077|consen 668 NTISSVNSQIPSVDIFSGLDGYYSRQILPGNAFYGFTRFCSKDNGVLFED---SLIQIGVKSETRNNLGRLYLFYGNKTS 744 (938)
T ss_pred CCccCCCCCCCchhhhcCccccccccCCChhhhhhhhhheeccCcEEeec---cceeEEEeeeccCcCCeEEEEeccccc
Confidence 11111111222234443 222222334444444332 357888884 669999999999999999999999999
Q ss_pred CCcccceeeeccc---ccCcccCCCCCCCcCCCCCeeeEEEeeeecCCCCCCCCCcceEEEEecCCCCeEEEEeccc--c
Q 002971 672 TPLDGFMIQFNKN---TFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKIS--L 746 (862)
Q Consensus 672 ~~it~f~~q~~~n---~~gl~~~~~~~~~~l~pg~~~~~~i~i~~~~~~~~~~~~~~l~~~~k~~~~~~~~~~l~~P--l 746 (862)
+++++|+.++-.+ .+.+..+..+..++|+||.|+++.+.+.|.+++.++| ++.+.|.++|..+ .+.-.+++| +
T Consensus 745 ~~lt~~s~~ii~~~~~~~~L~~~~kpv~~ti~~g~qvQQ~~~v~~i~d~~d~p-il~isfk~g~ti~-~~ta~l~lp~~i 822 (938)
T KOG1077|consen 745 VPLTSLSPTIIPPGNLELHLAVQNKPVTATIPPGAQVQQSLEVSCIRDFEDPP-ILAISFKFGGTIN-LKTAILKLPVLI 822 (938)
T ss_pred ccccccceeeecCCchhhhhhhcCcccCCCCCccceecceeeeeeecccccCC-eEEEEEEeCCchh-hhhhceechhhH
Confidence 9999999988753 3345554446667999999999999999999888854 7788888886555 455458888 4
Q ss_pred ccccccCCCCChHHHHHHhccCCCC-ccceeecCCCccCCHHHHHHHHHhcCceeeeeccCCCCceEEEEEEec----CC
Q 002971 747 HVLFTEDGRMERGSFLETWRSLPDS-NEVLKDLPGVVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIP----PG 821 (862)
Q Consensus 747 ~~l~~~~~~~~~~~F~~~W~~l~~~-~E~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~s~~~~----~~ 821 (862)
+.+| +|..|+.++||.||+++++. +|.|+.++...+.+...+.+++.++|..++. .+|||+++++. +|++ .+
T Consensus 823 skf~-~Pt~l~s~~Ff~rWk~ls~~~~~~q~~fk~~rpld~~~l~~~l~gf~~~l~~-~VDpnp~nlv~-agii~t~tq~ 899 (938)
T KOG1077|consen 823 SKFF-QPTELTSEDFFSRWKQLSGPQQEAQEVFKANRPLDAPSLENKLLGFGQTLLD-NVDPNPSNLVG-AGIIHTKSQN 899 (938)
T ss_pred hhhc-CcccccHHHHHHHHHhcccchhHHHHHHhcCCccccHHHHHHHhhhhHHHhc-cCCCCccceEE-EEEEeeccee
Confidence 5555 68999999999999999995 6999999888888888899999999887775 69999987655 5553 47
Q ss_pred ccEEEEEEeecCCCceEEEEecCCCchHHHHHHHHHHH
Q 002971 822 VPFLIELTTVIGNPGVKCAIKTPNPDIASLFFEAIETL 859 (862)
Q Consensus 822 ~~~L~~l~~~~~~~~~~ltvrs~~~~v~~~l~~~i~~~ 859 (862)
+|||+|++++.++..+|+|+|++++.++..++++++..
T Consensus 900 vgCL~RiEpn~~~~~~rltvrss~~tlak~l~e~l~nq 937 (938)
T KOG1077|consen 900 VGCLLRIEPNAQAQMYRLTVRTSKPTLAKELVELLKNQ 937 (938)
T ss_pred eeeEEEeccCCcceEEEEEEecCCchHHHHHHHHHhhc
Confidence 99999999998888999999999999999999998764
No 2
>PTZ00429 beta-adaptin; Provisional
Probab=100.00 E-value=4.5e-107 Score=947.18 Aligned_cols=544 Identities=37% Similarity=0.669 Sum_probs=513.9
Q ss_pred CCCCCCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHH
Q 002971 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (862)
Q Consensus 1 mt~G~dvs~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~ 80 (862)
||+|+|||++|++|+++++|+|+++|||||||+++|++.+||+++|+||+|+||++|+||++||+|||+||+|+.+++++
T Consensus 60 mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e 139 (746)
T PTZ00429 60 MTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLE 139 (746)
T ss_pred HHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccH
Q 002971 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (862)
Q Consensus 81 ~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~ 160 (862)
++.++|++++.|++|||||+|++|++|+|+.+|+.+++.+|.+.|.++|.|+|++|++||+.+|++|+..++. .+.+.+
T Consensus 140 ~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~-~l~l~~ 218 (746)
T PTZ00429 140 YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSE-KIESSN 218 (746)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCch-hhHHHH
Confidence 9999999999999999999999999999999999998788999999999999999999999999999987764 467889
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHHH
Q 002971 161 HTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK 240 (862)
Q Consensus 161 ~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~ 240 (862)
+.+++|++.+.+++||+|+.+|++|.+|.|.+.+++.++++.+.++|+|+|+||+++|+++++++.+++ +++.++++++
T Consensus 219 ~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~-~~~~~~~~~~ 297 (746)
T PTZ00429 219 EWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRC-SQELIERCTV 297 (746)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC-CHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999986543 4677888888
Q ss_pred hcccchhhcccCChhHHHHHHHHHHHHHhhChhhhhccceEEEecCCCcHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhh
Q 002971 241 KMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYA 320 (862)
Q Consensus 241 ~~~~~L~~lls~~~~iry~aL~~l~~i~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~ 320 (862)
++.++|++|+++++|+||++|++|..|++++|.+|.+|+++|||+++||.|||++||++|+.|||++|+..|++||.+|+
T Consensus 298 rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa 377 (746)
T PTZ00429 298 RVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYA 377 (746)
T ss_pred HHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHh
Confidence 89999999998999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCcccHHHHHHHHHHhh--ccCC
Q 002971 321 TEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESL--DTLD 398 (862)
Q Consensus 321 ~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l--~~~~ 398 (862)
++.|.+|++++|++||+||.|++..++||+++|+++++.+++++ .+++.++++|+|+||+.+ ++..|++.+ +.+.
T Consensus 378 ~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~~~~~v-~e~i~vik~IlrkyP~~~--il~~L~~~~~~~~i~ 454 (746)
T PTZ00429 378 SGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDRRPELL-PQVVTAAKDIVRKYPELL--MLDTLVTDYGADEVV 454 (746)
T ss_pred hcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHCccHH--HHHHHHHhhcccccc
Confidence 99999999999999999999999999999999999999887765 578999999999999863 778888765 6888
Q ss_pred chHHHHHHHHHHhhcccccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcccCCCChHH
Q 002971 399 EPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDL 478 (862)
Q Consensus 399 ~~~~~~~~~wilGEy~~~i~~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~~~~~~~~~i~~~l~~~~~~s~~~dv 478 (862)
+|+++++++||+|||++.+++++++++.++++|.+|+++||+++||+++|+|.++|++ .+++++++|+.++.++.|+||
T Consensus 455 e~~AKaaiiWILGEy~~~I~~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~-~~~~l~~vL~~~t~~~~d~DV 533 (746)
T PTZ00429 455 EEEAKVSLLWMLGEYCDFIENGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQG-MEPQLNRVLETVTTHSDDPDV 533 (746)
T ss_pred cHHHHHHHHHHHHhhHhhHhhHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHH-HHHHHHHHHHHHHhcCCChhH
Confidence 9999999999999999999999999999999999999999999999999999999976 789999999988888899999
Q ss_pred HHHHHHHHHHhcCCH--HHHHHhhccCCCCCCCCCccCChhHHHHHHHhcCcccccccCCcchhcccccccCCC
Q 002971 479 RDRAYIYWRLLSTDP--EAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTASR 550 (862)
Q Consensus 479 rdRA~~y~~ll~~~~--~~~~~~v~~~~p~~~~~~~~~~~~ll~~l~~~~~~~~~vy~~~~~~~~~~~~~~~~~ 550 (862)
||||++|||||+.++ +.++++|++++|++.......++.++++|+.+|||+|+||+||++.|+++......+
T Consensus 534 RDRA~~Y~rLLs~~~~~~~a~~iv~~~~~~i~~~~~~~d~~~l~~L~~~~~tlssvY~kp~~~f~~~~~~~~~~ 607 (746)
T PTZ00429 534 RDRAFAYWRLLSKGITVAQMKKVVHGQMVPVNVDSTFSDAMTMADLKKSLNTAAIVFARPYQSFLPPYGLADVE 607 (746)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHhcCceeeeecCCHHHhcCchhccccc
Confidence 999999999999764 668999999999987766667878999999999999999999999999887766544
No 3
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-107 Score=904.33 Aligned_cols=691 Identities=64% Similarity=0.986 Sum_probs=617.6
Q ss_pred CCCCCCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHH
Q 002971 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (862)
Q Consensus 1 mt~G~dvs~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~ 80 (862)
||+|+|||.+|++|++++++.|+++|||+|||+++|+..+|+++++++|+|.||+.|+||.+|++|+|+||+++.+.+.+
T Consensus 41 Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~e 120 (734)
T KOG1061|consen 41 MTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKITE 120 (734)
T ss_pred CccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCC-Cccccc
Q 002971 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR-PIFEIT 159 (862)
Q Consensus 81 ~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~-~~~~l~ 159 (862)
++..++.++++|.+|||||+|+.|+.|+|+.+|+++.+.++.+.|+.++.|.||+|++||+++|.+|.+.++. ..+.+.
T Consensus 121 y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~ 200 (734)
T KOG1061|consen 121 YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELN 200 (734)
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998764 568899
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHH
Q 002971 160 SHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC 239 (862)
Q Consensus 160 ~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~ 239 (862)
+..++++++.+++|+||+|+.+|+.++.|.|.++.+++++++++.++++|.|++|++.++++++++.+++. +....+.
T Consensus 201 ~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~--~~~~~~~ 278 (734)
T KOG1061|consen 201 PQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLK--QVNELLF 278 (734)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHH--HHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999876543 3556788
Q ss_pred HhcccchhhcccCChhHHHHHHHHHHHHHhhChhhhhccceEEEecCCCcHHHHHHHHHHHHHhcCcCcHHHHHHHHHHh
Q 002971 240 KKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEY 319 (862)
Q Consensus 240 ~~~~~~L~~lls~~~~iry~aL~~l~~i~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y 319 (862)
+++.++|++++++.++++|++|+++..+.+++|++|..++++|||.|+||+|||..||+++..+++.+|+.+|+.||.+|
T Consensus 279 ~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eY 358 (734)
T KOG1061|consen 279 KKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEY 358 (734)
T ss_pred HHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHh
Confidence 89999999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCcccHHHHHHHHHHhhccCCc
Q 002971 320 ATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDE 399 (862)
Q Consensus 320 ~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~ 399 (862)
+++.|.+|++++|++||+||.|++.. +.||++++++++.+.+|+++|++.++++|+|+||+.++.++..++..++.+++
T Consensus 359 atevD~~fvrkaIraig~~aik~e~~-~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~e 437 (734)
T KOG1061|consen 359 ATEVDVDFVRKAVRAIGRLAIKAEQS-NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCENLDSLQE 437 (734)
T ss_pred hhhhCHHHHHHHHHHhhhhhhhhhhh-hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhhcccccccCC
Confidence 99999999999999999999999888 88999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcccccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcccCCCChHHH
Q 002971 400 PEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLR 479 (862)
Q Consensus 400 ~~~~~~~~wilGEy~~~i~~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~~~~~~~~~i~~~l~~~~~~s~~~dvr 479 (862)
|++|++++||+|||++.+++++++|+.|+++|.+|+.+||+.+|||.+|+|.++|.+ .+++++.+|.+|+.+++|+|+|
T Consensus 438 peak~amiWilg~y~~~i~~a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~-tq~~l~~vL~~~~~d~~~~dlr 516 (734)
T KOG1061|consen 438 PEAKAALIWILGEYAERIENALELLESFLENFKDETAEVQLELLTAAIKLFLKKPTE-TQELLQGVLPLATADTDNPDLR 516 (734)
T ss_pred hHHHHHHHHHHhhhhhccCcHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCcc-HHHHHHHHHhhhhccccChhhh
Confidence 999999999999999999999999999999999999999999999999999999986 9999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHhhccCCCCCCCCCccCChhHHHHHHHhcCcccccccCCcchhcccccccCCCCCCCCCCCC
Q 002971 480 DRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTASRTDDEDYPNG 559 (862)
Q Consensus 480 dRA~~y~~ll~~~~~~~~~~v~~~~p~~~~~~~~~~~~ll~~l~~~~~~~~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (862)
||+++|||+|+.++..+++++++++|.++...+.+++.++++|+.++||+|+|||||++.|+.+.+...... ++.....
T Consensus 517 Dr~l~Y~RlLs~~~~~a~~v~~~~kP~is~~~~~~~p~~le~l~~~i~tlssVY~Kp~~~f~~~~~~~~~~~-~~~~~l~ 595 (734)
T KOG1061|consen 517 DRGLIYWRLLSEDPLIAKDVVLAEKPLISEETDSLDPTLLEELLCDIGTLSSVYHKPPSAFVEGQKGGLFKR-DEVGVLL 595 (734)
T ss_pred hhHHHHHHHhhcCHHHHHHHHhcCCCccccCCCCCCchHHHHHHHhhccccceeecChHHhcCcCcccccCC-cchhhhc
Confidence 999999999999999999999999999999988899999999999999999999999999998877765442 1110000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCCCCCCCCCCccccc
Q 002971 560 SEQGYSDAPTHVADEGASPQTSSSNAPYAATRQPAPPPAAPVSPPVPDLLGDLIGLDNSAAIVPADQAAASPVPALPVVL 639 (862)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~p~~~~~~~~~~~~~~l~ 639 (862)
. .+ ...| ..+|+++..... . ..+
T Consensus 596 ~---------~~------------------~s~~--------------~~~D~~~~~~es-~---------------~~~ 618 (734)
T KOG1061|consen 596 S---------FA------------------ESQP--------------SIGDLLGGGLES-L---------------DLF 618 (734)
T ss_pred c---------cc------------------ccCC--------------CchhhccCcccc-c---------------ccc
Confidence 0 00 0000 001222211100 0 000
Q ss_pred cCCCC--CceEEEEEEEeeCCeeEEEEEEEecCCCCcccceeeecccccCcccCCCCCCCcCCCCCeeeEEEeeeecCCC
Q 002971 640 PASTG--QGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNM 717 (862)
Q Consensus 640 ~~~~~--~gL~I~~~~~~~~~~~~l~l~~~N~s~~~it~f~~q~~~n~~gl~~~~~~~~~~l~pg~~~~~~i~i~~~~~~ 717 (862)
+...+ -.+++...|+++.+++.+...++|++.....+|..+|+ | .+.. ..-....|+++....+++.+.++.
T Consensus 619 ~~~g~~t~~~e~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~f~----~-a~s~-~~~~P~~~~~~~~~~~~l~~~~~~ 692 (734)
T KOG1061|consen 619 DLGGLGTLSLEVSSQFTRKEGELVIYMKFTNKANSIRIDFEIQFN----G-APSL-ANSKPLLPNGKAVDSLPLGTFGLM 692 (734)
T ss_pred cCCCCcccchhhhcceecccccccccccccccccchhhhhHhhcC----C-CCcc-cCCCCCccccchhhccCcchhhhh
Confidence 00000 01568888999999999999999999999999999987 3 1111 122355678889999999999998
Q ss_pred CCCCCCcceEEEEecCCCCeEEEEeccccccccccCCCCChHHHHHHhccCCC
Q 002971 718 SAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPD 770 (862)
Q Consensus 718 ~~~~~~~~l~~~~k~~~~~~~~~~l~~Pl~~l~~~~~~~~~~~F~~~W~~l~~ 770 (862)
...+|..++|++++.+- ...++..+|.+.++| |..+|+.++.
T Consensus 693 ~~~~~~~~~q~~~~~~~-------~~~~~~~~~v~~~~~----~~~t~~~~~~ 734 (734)
T KOG1061|consen 693 RPMEPLSNLQEAVKNNK-------ALNMLKTLFVEDGSM----FLATWKGIPN 734 (734)
T ss_pred ccCCCcchHHHHHhchH-------hhccchhHHHHHHHH----HHHhhccCCC
Confidence 88888889999999763 345566777777666 9999999863
No 4
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-97 Score=810.84 Aligned_cols=807 Identities=29% Similarity=0.465 Sum_probs=634.3
Q ss_pred CCCCCCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHH
Q 002971 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (862)
Q Consensus 1 mt~G~dvs~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~ 80 (862)
|..|+|||.+|++|||+++|+|.++|||+|+|+.+||+++||+++|.||||||+|.|+|+++||.|||+|++||.+.+++
T Consensus 63 iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlSsIRvp~IaP 142 (968)
T KOG1060|consen 63 IAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLSSIRVPMIAP 142 (968)
T ss_pred HhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhcchhhHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccH
Q 002971 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (862)
Q Consensus 81 ~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~ 160 (862)
.++-+|+++..|.+|||||+||+|+.|+|..+|+.-. .+.+.|..||.|++|.|+++|+.++.++|+++ ++++|
T Consensus 143 I~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~--qL~e~I~~LLaD~splVvgsAv~AF~evCPer----ldLIH 216 (968)
T KOG1060|consen 143 IMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKD--QLEEVIKKLLADRSPLVVGSAVMAFEEVCPER----LDLIH 216 (968)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHH--HHHHHHHHHhcCCCCcchhHHHHHHHHhchhH----HHHhh
Confidence 9999999999999999999999999999999999876 48999999999999999999999999997654 89999
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhhccccc---------------------------------HHHHHHHHHHHHHhh
Q 002971 161 HTLSKLLTALNECTEWGQVFILDALSRYKAAD---------------------------------AREAENIVERVTPRL 207 (862)
Q Consensus 161 ~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~---------------------------------~~~~~~il~~v~~~l 207 (862)
+.+++||+.|.+.++|+|+.++.+|.+|++.. +.+...+++..-+++
T Consensus 217 knyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl 296 (968)
T KOG1060|consen 217 KNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLL 296 (968)
T ss_pred HHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHH
Confidence 99999999999999999999999999998531 123345677888999
Q ss_pred cCCChHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhcccCChhHHHHHHHHHHHHHhhChhhhhccceEEEecCC
Q 002971 208 QHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYN 287 (862)
Q Consensus 208 ~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~lls~~~~iry~aL~~l~~i~~~~p~~~~~~~~~~~~l~~ 287 (862)
+++|++|++++++++.++.+ +... .+++.+|++||.+++++||++|++|..|+.+.|.+|.+|++.||++..
T Consensus 297 ~S~n~sVVmA~aql~y~lAP----~~~~----~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ss 368 (968)
T KOG1060|consen 297 QSRNPSVVMAVAQLFYHLAP----KNQV----TKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSS 368 (968)
T ss_pred hcCCcHHHHHHHhHHHhhCC----HHHH----HHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecC
Confidence 99999999999999998743 2222 246788999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhcchhHHH
Q 002971 288 DPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQE 367 (862)
Q Consensus 288 d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e 367 (862)
||..+|..||++|..|+|+.|+..|++||..|+.+.|.+|+..+|++||+||.+.....+.|++.|+.+++.....|..|
T Consensus 369 Dp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~e 448 (968)
T KOG1060|consen 369 DPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAE 448 (968)
T ss_pred CHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCcccHHHHHHHHHHhhccCCchHHHHHHHHHHhhcccccCC-HHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 002971 368 AIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN-ADELLESFLESFPEEPAQVQLQLLTAT 446 (862)
Q Consensus 368 ~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~-~~~~l~~~~~~~~~e~~~v~~~iLta~ 446 (862)
++.+|+.+++++|-.+..++.+|.+.++.+..|.|+++++|++|||+..++. ++|++|.++++|.+|.++||++||...
T Consensus 449 aV~vIk~Llq~~p~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e~vpri~PDVLR~laksFs~E~~evKlQILnL~ 528 (968)
T KOG1060|consen 449 AVVVIKRLLQKDPAEHLEILFQLARLLDTILVPAARAGIIWLIGEYCEIVPRIAPDVLRKLAKSFSDEGDEVKLQILNLS 528 (968)
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcchhchHHHHHHHHhhccccchhhHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999876 799999999999999999999999999
Q ss_pred HHHhhcCCCCChHHHHHHHHHhcccCCCChHHHHHHHHHHHHhcCCH---HHHHHhhccCCCCCCCCCccCChh-HHHHH
Q 002971 447 VKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDP---EAAKDVVLAEKPVISDDSNQLDPS-LLDEL 522 (862)
Q Consensus 447 ~Kl~~~~~~~~~~~~i~~~l~~~~~~s~~~dvrdRA~~y~~ll~~~~---~~~~~~v~~~~p~~~~~~~~~~~~-ll~~l 522 (862)
+|+|...+++ .+.+++++++++.+| .++|+||||+||..|+.... +.+++++++.+|........-++. .++.+
T Consensus 529 aKLyl~~~~~-~kll~~Yv~~L~~yD-~sYDiRDRaRF~r~l~~~~~~Ls~h~~ei~l~~Kpa~~~es~f~~~~~~~gsl 606 (968)
T KOG1060|consen 529 AKLYLTNIDQ-TKLLVQYVFELARYD-LSYDIRDRARFLRQLISPLEALSKHAREIFLASKPAPVLESSFKDRHYQLGSL 606 (968)
T ss_pred hhheEechhh-HHHHHHHHHHHhccC-CCcchhHHHHHHHHHhccHHHHHHHHHHHhhccCCCccCcccccCCCcccchH
Confidence 9999998876 889999999998764 89999999999999998633 577999999886443222111211 11222
Q ss_pred HHhcCcccccccCCcchhcccccc--cC-----C--CCCCCCCCC-CC--CCCCC--CCCCCC--------CCCC-----
Q 002971 523 LANIATLSSVYHKPPEAFVTRVKT--TA-----S--RTDDEDYPN-GS--EQGYS--DAPTHV--------ADEG----- 575 (862)
Q Consensus 523 ~~~~~~~~~vy~~~~~~~~~~~~~--~~-----~--~~~~~~~~~-~~--~~~~~--~~~~~~--------~~~~----- 575 (862)
-.-++.-+..|..-|.+-.....+ .. . .++.++... .+ +.+++ .+++.. .++.
T Consensus 607 S~lLn~~a~GY~~lp~~~~~~~d~~~~~~~a~~~~~~~e~~e~~~~~~~s~~~ses~~~~~~~~e~ge~~dsn~~~~~~~ 686 (968)
T KOG1060|consen 607 SLLLNAPAPGYEPLPNWPAVAPDPFPDSERAKLLDSDSEEEETGDDESWSDPESESGESSNFSREGGEENDSNEEKDSED 686 (968)
T ss_pred HHHhcCcCcCCccCCCccccCCCCCcchhhcccccCCccccccccccCCCCCccccccCCcccccccccccccccccccc
Confidence 222555566665555432211111 00 0 000111000 00 00000 000000 0000
Q ss_pred -CCCCC-----CCCCCCC-CCCCCCCCCCCCCCCCCCCCcccccccCC--CCCC----------------cccCC-----
Q 002971 576 -ASPQT-----SSSNAPY-AATRQPAPPPAAPVSPPVPDLLGDLIGLD--NSAA----------------IVPAD----- 625 (862)
Q Consensus 576 -~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~dl~~~~--~~~~----------------~~p~~----- 625 (862)
.+.|+ +.+|... ..+..-.++......+...+...|+-++. ++.. .++..
T Consensus 687 d~sdqss~~~ss~~d~~s~se~e~e~~~e~~k~~pet~~~sl~l~d~~~~n~~P~~~~~~~~~l~~d~~~~~~~~s~~~~ 766 (968)
T KOG1060|consen 687 DFSDQSSYEESSAEDSESSSEAESEPTPEKLKEKPETKDVSLDLNDFTPQNGKPVLPERNDPDLAADDEFFSLTGSRNSK 766 (968)
T ss_pred cccccchhccccccccccccccccccCCCccCCCcccccccccccccCCCCCCCCCCCCCChhhhccccccccccccccc
Confidence 00000 0000000 00000000000000000000000111110 0000 00000
Q ss_pred -CCCCCCCC-CccccccCCCCCceEEEEEEEeeCCeeEEEEEEEecCCCCcccceeeecccccCcccCCCCCCCcCCCCC
Q 002971 626 -QAAASPVP-ALPVVLPASTGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGT 703 (862)
Q Consensus 626 -~~~~~~~~-~~~~l~~~~~~~gL~I~~~~~~~~~~~~l~l~~~N~s~~~it~f~~q~~~n~~gl~~~~~~~~~~l~pg~ 703 (862)
...+...+ ...++++..+|+|+.+.|+|.|+++ +.+++.|+|++..++.++++ +-++|++++.+.++..++||+
T Consensus 767 ~~~~p~~i~~~~~ell~~~~g~gl~~~y~f~r~~~-~~i~~~~~n~~~~~~~~~~l---~~p~gm~i~ef~~i~s~~pg~ 842 (968)
T KOG1060|consen 767 PLKIPTHIEEKSIELLNEVEGSGLDLEYSFSRLPD-VSISLHFTNKSDLELLGIHL---KLPAGMSIKEFSPIESLPPGA 842 (968)
T ss_pred cccCCccCcchhHhhhhhcccCCcceeeeccCCCC-eeEEEecccCCCccccccee---eccccccccccccccccCCCc
Confidence 00000001 1236677788999999999999996 89999999999999999998 557899999999999999999
Q ss_pred eeeEEEeeeecCCCCCCCCCcceEEEEecCCCCeEEEEeccccccccccCCCCChHHHHHHhccCCCCccceeecCCCcc
Q 002971 704 SGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEVLKDLPGVVV 783 (862)
Q Consensus 704 ~~~~~i~i~~~~~~~~~~~~~~l~~~~k~~~~~~~~~~l~~Pl~~l~~~~~~~~~~~F~~~W~~l~~~~E~~~~~~~~~~ 783 (862)
+......|.|.+..+.. .|++...+ + +++++.|++++.. +..|++.+|.+....|+|++|++..+....
T Consensus 843 ~~~~~~~i~F~dst~~~----~~~l~~~~--g---~~~~~~pvge~~~-~v~~~~~~~~~E~~~L~gln~~~~~l~~~~- 911 (968)
T KOG1060|consen 843 SASVVLGIDFCDSTQAA----EWQLLTDD--G---RVRFQPPVGELVQ-PVRMSEEDFKKERGKLGGLNEHVIQLENPN- 911 (968)
T ss_pred ceeeeeeeeccccccce----eEEEEecc--C---cEEecCchhhhhc-cccCCHHHHHhhhhhhcccchhheeeeccc-
Confidence 99999999999987765 46776654 2 7889999999985 888999999999999999999987775541
Q ss_pred CCHHHHHHHHHhcCceeeeeccCCCCceEEEEEEecC-CccEEEEEEeecCCCceEEEEecCCCchHHHHHHHHHHH
Q 002971 784 SNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIPP-GVPFLIELTTVIGNPGVKCAIKTPNPDIASLFFEAIETL 859 (862)
Q Consensus 784 ~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~s~~~~~-~~~~L~~l~~~~~~~~~~ltvrs~~~~v~~~l~~~i~~~ 859 (862)
...|...++.+ .. +.|+++|.. +..||++++.. ++.|+|++.+++..+.+.+...
T Consensus 912 ----------~~an~~~~~~g----~~-~rFa~~tlss~~~~llT~~~k------~l~ince~~ViG~~ll~~~~~~ 967 (968)
T KOG1060|consen 912 ----------PSANVLFVPSG----SS-HRFAGQTLSSKSLVLLTVDEK------TLEINCEKTVIGSMLLNEVSNA 967 (968)
T ss_pred ----------chhhhhcccCC----cc-eeeeeeeccCCceEEEEeehh------eeEecchhhhHHHHHHHHHHhh
Confidence 11233344433 32 889999984 68899999753 8999999999999998877653
No 5
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.4e-78 Score=665.89 Aligned_cols=494 Identities=22% Similarity=0.330 Sum_probs=427.4
Q ss_pred CCCCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHH
Q 002971 3 VGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYL 82 (862)
Q Consensus 3 ~G~dvs~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l 82 (862)
+|||.+|+.++++|+++|++|..||+|||+++.+.++++|+.+|++|+++|||+|+|.+++|+||+++|+|.++||++++
T Consensus 64 LGypahFGqieclKLias~~f~dKRiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~Emardl 143 (866)
T KOG1062|consen 64 LGYPAHFGQIECLKLIASDNFLDKRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDL 143 (866)
T ss_pred hCCCccchhhHHHHHhcCCCchHHHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCC--cccccH
Q 002971 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP--IFEITS 160 (862)
Q Consensus 83 ~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~--~~~l~~ 160 (862)
.|.|.+++++++|||||||++|+.|+.++.|++++. |++.-.++|+|+|+||+.+++..+.++++.++.. .|+-..
T Consensus 144 apeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~--f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~ 221 (866)
T KOG1062|consen 144 APEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH--FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLV 221 (866)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH--hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999999999999999999999999999999985 9999999999999999999999999999986543 233233
Q ss_pred HHHHHHHHHhc------------cCChhHHHHHHHHHhhcccccHHHH---HHHHHHHHHh---hcCCChHHHHHHHHHH
Q 002971 161 HTLSKLLTALN------------ECTEWGQVFILDALSRYKAADAREA---ENIVERVTPR---LQHANCAVVLSAVKMI 222 (862)
Q Consensus 161 ~~~~~Ll~~l~------------~~~~w~q~~iL~~L~~~~~~~~~~~---~~il~~v~~~---l~~~n~aV~~eai~~i 222 (862)
+.+.++++.+. -++||+|++||++|+.+...|++.. .+++..+.+. -++.+.||+|||+++|
T Consensus 222 ~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI 301 (866)
T KOG1062|consen 222 PSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTI 301 (866)
T ss_pred HHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHH
Confidence 33444444443 1689999999999999987664333 2334344332 3456679999999999
Q ss_pred HHhhhccCChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhChhhhhccce-EEEecCCCcHHHHHHHHHHH
Q 002971 223 LQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIK-VFFCKYNDPIYVKMEKLEIM 300 (862)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~~~~~~~~-~~~~l~~d~~~Ik~~~L~lL 300 (862)
+.+. +...++.++ ++.|.++| +++.|+||++|..|.+.++..|.+++.|.. ++.|+.+.|.+|||+|||++
T Consensus 302 ~~I~----~~~~Lrvla---iniLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs 374 (866)
T KOG1062|consen 302 MDIR----SNSGLRVLA---INILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELS 374 (866)
T ss_pred Hhcc----CCchHHHHH---HHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 9863 344556654 44566665 789999999999999999999999999865 89999999999999999999
Q ss_pred HHhcCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhC-
Q 002971 301 IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRY- 379 (862)
Q Consensus 301 ~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~- 379 (862)
|+|+|++|+..+++||++|+..+|.+|+.+++.+|..+|++|+++..|++|++++.++.+|++|.+++|..+.+++.+-
T Consensus 375 ~~lvn~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~ 454 (866)
T KOG1062|consen 375 YALVNESNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAF 454 (866)
T ss_pred HHHhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998886
Q ss_pred cccHHHHHHHHHHhhc-----cCCchHHHHHHHHHHhhcccccCC-----------HH---HHHHHHhhhCCCCCHHHHH
Q 002971 380 PNTYESIIATLCESLD-----TLDEPEAKASMIWIIGEYAERIDN-----------AD---ELLESFLESFPEEPAQVQL 440 (862)
Q Consensus 380 p~~~~~~i~~L~~~l~-----~~~~~~~~~~~~wilGEy~~~i~~-----------~~---~~l~~~~~~~~~e~~~v~~ 440 (862)
++.+++.+.+|+..+. +++.+....+++|+|||||++.-+ .. ++++.++.++.. +..+|.
T Consensus 455 ~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s-~~~tk~ 533 (866)
T KOG1062|consen 455 QELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSS-DSTTKG 533 (866)
T ss_pred cchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccc-hHHHHH
Confidence 8999999999987653 255555678999999999987543 23 445555555544 499999
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHhcccCCCChHHHHHHHHHHHHhcCCHHHHHHhhccCCCCCCCC
Q 002971 441 QLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDD 510 (862)
Q Consensus 441 ~iLta~~Kl~~~~~~~~~~~~i~~~l~~~~~~s~~~dvrdRA~~y~~ll~~~~~~~~~~v~~~~p~~~~~ 510 (862)
++|+|++||..|++. ..+.+++++... ..|.|.|+||||+||..|+.. ...+++.+++.||.++.-
T Consensus 534 yal~Al~KLSsr~~s--~~~ri~~lI~~~-~~s~~~elQQRa~E~~~l~~~-~~~lr~siLe~mp~~e~~ 599 (866)
T KOG1062|consen 534 YALTALLKLSSRFHS--SSERIKQLISSY-KSSLDTELQQRAVEYNALFAK-DKHLRKSILERMPSCEDI 599 (866)
T ss_pred HHHHHHHHHHhhccc--cHHHHHHHHHHh-cccccHHHHHHHHHHHHHHHH-HHHHHHHhcccCcccccc
Confidence 999999999999997 477888887764 478999999999999999974 577888999999988663
No 6
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=100.00 E-value=8.1e-74 Score=673.02 Aligned_cols=482 Identities=37% Similarity=0.646 Sum_probs=434.0
Q ss_pred CCCCCCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHH
Q 002971 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (862)
Q Consensus 1 mt~G~dvs~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~ 80 (862)
|++|+|++++|++++++++|+|++.||+||+|++.+++.++|+++|++|+++|||+|+||++||+|||+||+++++++++
T Consensus 34 ~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~ 113 (526)
T PF01602_consen 34 MMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAE 113 (526)
T ss_dssp HHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHH
T ss_pred HHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccH
Q 002971 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (862)
Q Consensus 81 ~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~ 160 (862)
.+.+.|.+++.|++|||||+|++|++|+|+.+|+.+++. |++.+.++|.|+|++|+.+|+.++.++ +..+.....+.+
T Consensus 114 ~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~ 191 (526)
T PF01602_consen 114 PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIP 191 (526)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHH
Confidence 999999999999999999999999999999999999865 899999999999999999999999999 322222236778
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHH--HHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHH
Q 002971 161 HTLSKLLTALNECTEWGQVFILDALSRYKAADAREA--ENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNL 238 (862)
Q Consensus 161 ~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~--~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~ 238 (862)
..+++|++.+..++||+|++++++|..|.+.++.+. ..+++.+.+.+++.+++|+++|+++++++.+ ++...
T Consensus 192 ~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~---~~~~~--- 265 (526)
T PF01602_consen 192 KLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSP---SPELL--- 265 (526)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SHHHH---
T ss_pred HHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhc---chHHH---
Confidence 888888888899999999999999999999888888 7899999999999999999999999998742 44433
Q ss_pred HHhcccchhhcc-cCChhHHHHHHHHHHHHHhhChh-hhhccceEEEecCCCcHHHHHHHHHHHHHhcCcCcHHHHHHHH
Q 002971 239 CKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPT-ILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEF 316 (862)
Q Consensus 239 ~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~-~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL 316 (862)
..++++|++++ ++++|+||++|++|..|+..+|. ++..+...|++++++|.+||++||++|+.+++++|++.|++||
T Consensus 266 -~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL 344 (526)
T PF01602_consen 266 -QKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKEILDEL 344 (526)
T ss_dssp -HHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred -HhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHHHHHhhcccccchhhHHHHH
Confidence 34677788888 57899999999999999999954 4544555677777999999999999999999999999999999
Q ss_pred HHhhhhc-cHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCcccHHHHHHHHHHhhc
Q 002971 317 KEYATEV-DVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLD 395 (862)
Q Consensus 317 ~~y~~~~-d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~ 395 (862)
.+|+.+. |.+++++++++|+.+|.+++++.+||++++++++..+++++..++|..+++++.++|+.++.++..|++.++
T Consensus 345 ~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~ 424 (526)
T PF01602_consen 345 LKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLE 424 (526)
T ss_dssp HHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHT
T ss_pred HHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHH
Confidence 9999655 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHhhcccccCC---HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChH-HHHHHHHHhccc
Q 002971 396 TLDEPEAKASMIWIIGEYAERIDN---ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQ-QMIQVVLNNATV 471 (862)
Q Consensus 396 ~~~~~~~~~~~~wilGEy~~~i~~---~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~~~~~~~-~~i~~~l~~~~~ 471 (862)
++.+|+++++++|++|||++.+++ +.++++.++++|..+++.||+++||+++|++.+.|.++.. .+++.+.+.+.+
T Consensus 425 ~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~ 504 (526)
T PF01602_consen 425 DISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATE 504 (526)
T ss_dssp SSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHH
T ss_pred HhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcc
Confidence 999999999999999999999998 9999999999999999999999999999999999964243 667777777766
Q ss_pred CCCChHHHHHHHHHHHHhcC
Q 002971 472 ETDNPDLRDRAYIYWRLLST 491 (862)
Q Consensus 472 ~s~~~dvrdRA~~y~~ll~~ 491 (862)
+|.|+||||||+|||+||+.
T Consensus 505 ~s~~~evr~Ra~~y~~ll~~ 524 (526)
T PF01602_consen 505 DSSDPEVRDRAREYLRLLNS 524 (526)
T ss_dssp S-SSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcc
Confidence 78999999999999999974
No 7
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.6e-64 Score=574.78 Aligned_cols=531 Identities=40% Similarity=0.626 Sum_probs=458.8
Q ss_pred CCCCCCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHH
Q 002971 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (862)
Q Consensus 1 mt~G~dvs~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~ 80 (862)
|+.|+|||.+|++|+|.+.+.|.++|||+|+|+.+|++.+|++++|++|+++||++|+||++||+|||+||.++.+++++
T Consensus 47 M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~el~~ 126 (757)
T COG5096 47 MSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRVKELLG 126 (757)
T ss_pred HhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcChHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccH
Q 002971 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (862)
Q Consensus 81 ~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~ 160 (862)
+++++|++++.|++|||||+|++|+.|+|+.+|+.+.+.|....+..++.|.||.|+++|+.+|.+|.+....
T Consensus 127 ~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~a~------- 199 (757)
T COG5096 127 NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPELAH------- 199 (757)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchhhhh-------
Confidence 9999999999999999999999999999999999999888999999999999999999999999999876221
Q ss_pred HHHHHHHHHhc-------cC-ChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCCh
Q 002971 161 HTLSKLLTALN-------EC-TEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITST 232 (862)
Q Consensus 161 ~~~~~Ll~~l~-------~~-~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~ 232 (862)
+.....+..+. .+ .+|.+..++..|..+.+.++.++..+.+++.+.++|.|++|+..+++.++.+++++++.
T Consensus 200 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~s~~~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~ 279 (757)
T COG5096 200 GYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPDSAEDFEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSN 279 (757)
T ss_pred hHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCCcHHHHHHhccchhhhCcHHHHHHHHHHHHHHhhhhccc
Confidence 22222222222 22 49999999999999998888888888999999999999999999999999987766543
Q ss_pred HHHHHHHHhcccchhhcccCC-hhHHHHHHHHHHHHHhhChhhhhccceEEEecCCCcHHHHHHHHHHHHHhcCcCcHHH
Q 002971 233 DVVRNLCKKMAPPLVTLLSAE-PEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQ 311 (862)
Q Consensus 233 ~~~~~~~~~~~~~L~~lls~~-~~iry~aL~~l~~i~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~ 311 (862)
. +.....+++..|+.++ ..++|+..+....+....|..+..-.+.|+|.+++|.+++.+|++.++.+++.+|..+
T Consensus 280 ~----~~~~~~~~l~~Ll~~~~~~~~~vl~~~~~~~l~~~~k~~~~~~~~f~~~~~~~i~~~lek~~~~t~l~~~~n~~~ 355 (757)
T COG5096 280 N----LFLISSPPLVTLLAKPESLIQYVLRRNIQIDLEVCSKLLDKVKKLFLIEYNDDIYIKLEKLDQLTRLADDQNLSQ 355 (757)
T ss_pred c----HHHhhccHHHHHHcCCHHHHHHHHHHhhHHHHHhhHHHHHHHhhhhhhhccchHHHHHHHHHHHhhcCCchhhHH
Confidence 3 3345778888998655 7899999999999999999999988889999999999999999999999999999999
Q ss_pred HHHHHHHhhhh--ccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh---hhcchhHHHH-----HHHHH---HHHHh
Q 002971 312 VLLEFKEYATE--VDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIK---IKVNYVVQEA-----IIVIK---DIFRR 378 (862)
Q Consensus 312 Iv~eL~~y~~~--~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~---~~~~~v~~e~-----i~~l~---~i~~~ 378 (862)
++.|+..|+.+ .|.+++++++++||.++.+.+.....|++.++.+++ ..++|+.+|+ |.+++ .+++.
T Consensus 356 ~L~e~~~y~~~~~~~~e~v~~~ik~lgd~~sk~~s~~~~~I~~~lel~~g~~~~~~Yi~~e~~~~~~i~v~r~~~~~lr~ 435 (757)
T COG5096 356 ILLELIYYIAENHIDAEMVSEAIKALGDLASKAESSVNDCISELLELLEGVWIRGSYIVQEVRIVDCISVIRISVLVLRI 435 (757)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhccchhhccchhhhhhcccceeeeeehhcchhhh
Confidence 99999999998 999999999999999999999899999999999999 8999999998 66665 67777
Q ss_pred Cccc-HHHHHHHHHHhhccCC----chHHHHHH-----HHHHhhcccccCCH-HHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 002971 379 YPNT-YESIIATLCESLDTLD----EPEAKASM-----IWIIGEYAERIDNA-DELLESFLESFPEEPAQVQLQLLTATV 447 (862)
Q Consensus 379 ~p~~-~~~~i~~L~~~l~~~~----~~~~~~~~-----~wilGEy~~~i~~~-~~~l~~~~~~~~~e~~~v~~~iLta~~ 447 (862)
+|+- .+..+..++...+.++ .|+++.++ +|++|||++.+..- ++.++.++..|..|+.+||.+|+++.+
T Consensus 436 l~~~~~~~~~~~l~~~~e~l~~~~~~P~~k~~~~~~~~~wl~ge~~~~i~r~~~~~l~~~~~~~~~E~levq~~Il~~sv 515 (757)
T COG5096 436 LPNEYPKILLRGLYALEETLELQSREPRAKSVTDKYLGAWLLGEFSDIIPRLEPELLRIAISNFVDETLEVQYTILMSSV 515 (757)
T ss_pred cCCcchhhhHHHHHHHHHHhhccccCcHHHHHHhhhhHHHhHHHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 7765 4444444444444444 79988888 99999999998874 589999999999999999999999999
Q ss_pred HHhhcCCCCChH----HHHHHHHHhcccCCCChHHHHHHHHHHHHhcC-CHHHHHHhhccCCCCCCCCC-------ccCC
Q 002971 448 KLFLKKPTEGPQ----QMIQVVLNNATVETDNPDLRDRAYIYWRLLST-DPEAAKDVVLAEKPVISDDS-------NQLD 515 (862)
Q Consensus 448 Kl~~~~~~~~~~----~~i~~~l~~~~~~s~~~dvrdRA~~y~~ll~~-~~~~~~~~v~~~~p~~~~~~-------~~~~ 515 (862)
|++...+.. .. +..+.++++|+....++|+||||.+||++++. .++....++++++|...... ....
T Consensus 516 kl~~~~~~~-~~~~~~~~d~~v~~~~~~~v~~~DlRDra~my~~~lst~~~~~s~~i~~e~~~s~~~~~~i~~~~~~~~t 594 (757)
T COG5096 516 KLIANSIRK-AKQCNSELDQDVLRRCFDYVLVPDLRDRARMYSRLLSTPLPEFSDPILCEAKKSNSQFEIILSALLTNQT 594 (757)
T ss_pred HHHHhCcHh-hhhccchhccHHHHHHHhccCChhHHHHHHHHHHHhcCCCccccchhhhcccccccchhhhhhhhccccC
Confidence 999998764 22 36668999998888999999999999999984 56778888888876554432 1223
Q ss_pred hhHHHHHHHh--cCcccccccCCcchhccc
Q 002971 516 PSLLDELLAN--IATLSSVYHKPPEAFVTR 543 (862)
Q Consensus 516 ~~ll~~l~~~--~~~~~~vy~~~~~~~~~~ 543 (862)
+++++.|... +|+++.+|++|+..+..+
T Consensus 595 ~~~l~nl~~~~t~~~l~~~~~~~~~~l~~~ 624 (757)
T COG5096 595 PELLENLRLDFTLGTLSTIPLKPIFNLRKG 624 (757)
T ss_pred HHHHHhhhccccccceeccCCCCcccCCCC
Confidence 4455444444 499999999998775544
No 8
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-56 Score=484.62 Aligned_cols=479 Identities=19% Similarity=0.326 Sum_probs=408.6
Q ss_pred CCCCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHH
Q 002971 3 VGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYL 82 (862)
Q Consensus 3 ~G~dvs~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l 82 (862)
+|+|++|.-++++..|++..+..||+||++...-++..+|+..|++|+++||++|+|.+-.|+||..|+++.+|++++++
T Consensus 66 lg~d~swa~f~iveVmsssk~~~krigylaa~qSf~~~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~fvTpdLARDL 145 (877)
T KOG1059|consen 66 LGVDMSWAAFHIVEVMSSSKFQQKRIGYLAASQSFHDDTDVLMLTTNLLRKDLNSSNVYEVGLALSGLSCIVTPDLARDL 145 (877)
T ss_pred HcchHHHHhhhhhhhhhhhhhHHHHHhHHHHHHhhcCCccHHHHHHHHHHHHhccCccchhhheecccccccCchhhHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHH
Q 002971 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHT 162 (862)
Q Consensus 83 ~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~ 162 (862)
.++|..+|.++.|||||+|++.++|+|.+|||.+.. -+++|.+-|.|+||+|+++|+.++||++..+|++++.+.+ .
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~--~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP-~ 222 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP--CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAP-L 222 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh--hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccH-H
Confidence 999999999999999999999999999999999986 7899999999999999999999999999999999998875 4
Q ss_pred HHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCCh-HHHHHHHHHHHHh--hhccCChHHHHHHH
Q 002971 163 LSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANC-AVVLSAVKMILQQ--MELITSTDVVRNLC 239 (862)
Q Consensus 163 ~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~-aV~~eai~~i~~~--~~~~~~~~~~~~~~ 239 (862)
+.+|+.. ..+.|.-+++|++++.+.|-+|+...++++.+..++.+..+ +++|||+++++.- ..-.++.+..-++
T Consensus 223 ffklltt--SsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqL- 299 (877)
T KOG1059|consen 223 FYKLLVT--SSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQL- 299 (877)
T ss_pred HHHHHhc--cCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHH-
Confidence 5555443 46899999999999999999999999999999998887776 8999999999864 0001122222233
Q ss_pred Hhcccchhhcc-cCChhHHHHHHHHHHHHHhhChhhhhccce-EEEecCCCcHHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q 002971 240 KKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFK 317 (862)
Q Consensus 240 ~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~~~~~~~~-~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~ 317 (862)
.+..|..|+ .+|+|+||++|-++.+|+..||..++.|-. ++.|+.|.|.+||.+|||+|+.|++++|+..|++.|+
T Consensus 300 --CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM 377 (877)
T KOG1059|consen 300 --CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLM 377 (877)
T ss_pred --HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 234456666 689999999999999999999999999987 6789999999999999999999999999999999999
Q ss_pred HhhhhccH-HHHHHHHHHHHHHHHh----hhHhHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCcccHHHHHHHHHH
Q 002971 318 EYATEVDV-DFVRKAVRAIGRCAIK----LERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCE 392 (862)
Q Consensus 318 ~y~~~~d~-~~~~~~i~~I~~la~k----~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~ 392 (862)
.|+..++. .+|.+++..|-.++.+ |-.+++||+.++++|....|..-...+...+.++..+.|..|...+..+..
T Consensus 378 ~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~~ 457 (877)
T KOG1059|consen 378 KHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQMSA 457 (877)
T ss_pred HHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheechhhhHhHHHHHHH
Confidence 99988776 8999998765444432 457899999999999999887666777788999988999999998888877
Q ss_pred hhcc------CC----chHHHHHHHHHHhhcccccCCHHHHHHHHhhhC-CCCCHHHHHHHHHHHHHHhhcCCC----C-
Q 002971 393 SLDT------LD----EPEAKASMIWIIGEYAERIDNADELLESFLESF-PEEPAQVQLQLLTATVKLFLKKPT----E- 456 (862)
Q Consensus 393 ~l~~------~~----~~~~~~~~~wilGEy~~~i~~~~~~l~~~~~~~-~~e~~~v~~~iLta~~Kl~~~~~~----~- 456 (862)
.+++ .+ -+++..+++||+|||++++.|+.++++.++..- ...+..+|...+.+++|+|+..-. .
T Consensus 458 Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~~~~leamlrpr~~~lp~~iq~vyvqni~Klfc~~~~~~ee~~ 537 (877)
T KOG1059|consen 458 LLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVENPNDTLEAMLRPRSDLLPGHIQAVYVQNIVKLFCSWCSQFEETK 537 (877)
T ss_pred HHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhCHHHHHHHHhcCccccCchHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 7762 11 356778999999999999999999999999754 478999999999999999986411 1
Q ss_pred ---ChHHHHHH---HHHhcccCCCChHHHHHHHHHHHHhc
Q 002971 457 ---GPQQMIQV---VLNNATVETDNPDLRDRAYIYWRLLS 490 (862)
Q Consensus 457 ---~~~~~i~~---~l~~~~~~s~~~dvrdRA~~y~~ll~ 490 (862)
+...++.. .|.. ...+.|.|||.||.+.+.+++
T Consensus 538 ~~e~~~sL~~~i~~~l~q-f~~s~d~EvQERA~~~~~li~ 576 (877)
T KOG1059|consen 538 DFEGIVSLVNLILSFLEQ-FSGSSDLEVQERASEVLELIR 576 (877)
T ss_pred chhHHHHHHHHHHHHhhc-ccCccchhHHHHHHHHHHHHH
Confidence 11122222 2332 346789999999666655554
No 9
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-52 Score=461.59 Aligned_cols=778 Identities=16% Similarity=0.239 Sum_probs=576.5
Q ss_pred CCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHH
Q 002971 5 KDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCD 84 (862)
Q Consensus 5 ~dvs~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~ 84 (862)
.++..+|+.+.|+++++|..+||++|+++..+.....| .+++++++.||.+..++.+|+.|||+||+|....|...+..
T Consensus 60 ~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~ised-viivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~ier 138 (865)
T KOG1078|consen 60 TEATELFFAITKLFQSKDVSLRRMVYLAIKELSKISED-VIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIER 138 (865)
T ss_pred hhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchh-hhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHH
Confidence 46788999999999999999999999999999988777 68899999999999999999999999999999999999999
Q ss_pred HHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHH
Q 002971 85 PLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLS 164 (862)
Q Consensus 85 ~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~ 164 (862)
.+++++.|+++.|+..|...-++++..+++.+.. |.+.++....+.|.+|.++|+.+|+.|.+++. -.+.
T Consensus 139 y~kqaivd~~~avSsaalvss~hll~~~~~~vkr--w~neiqea~~s~~~m~QyHalglLyqirk~dr--------la~s 208 (865)
T KOG1078|consen 139 YMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKR--WANEVQEAVNSDNIMVQYHALGLLYQIRKNDR--------LAVS 208 (865)
T ss_pred HHHhHeeccccccchHHHHHHhhhhcccHHHHHH--HHHhhhhccCcHHHHHHHHHHHHHHHHHhhhH--------HHHH
Confidence 9999999999999999999999999999999985 99999999999999999999999999987753 1345
Q ss_pred HHHHHhcc---CChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHHHh
Q 002971 165 KLLTALNE---CTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKK 241 (862)
Q Consensus 165 ~Ll~~l~~---~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~ 241 (862)
+++..+.. .+|+..+.+++........+......+...+..+++|...+|.+||++.+..+.. . .+ +.+. .
T Consensus 209 klv~~~~~~~~~~~~A~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~-~-~~---r~l~-p 282 (865)
T KOG1078|consen 209 KLVQKFTRGSLKSPLAVCMLIRIASELLKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPN-T-NS---RELA-P 282 (865)
T ss_pred HHHHHHccccccchhHHHHHHHHHHHHhhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccc-c-CH---hhcc-h
Confidence 55555433 5788888888888776655533334556777889999999999999999998732 2 22 2211 2
Q ss_pred cccchhhccc-CChhHHHHHHHHHHHHHhhChhhhhccceEEEecCCCc-HHHHHHHHHHHHHhcCcCcHHHHHHHHHHh
Q 002971 242 MAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDP-IYVKMEKLEIMIKLASDRNIDQVLLEFKEY 319 (862)
Q Consensus 242 ~~~~L~~lls-~~~~iry~aL~~l~~i~~~~p~~~~~~~~~~~~l~~d~-~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y 319 (862)
.+..|..+++ ..+-+||.|++.|++++..+|..+.-....+.-+-+|. .+|...|+..|++.++++|++.++..+..|
T Consensus 283 avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~f 362 (865)
T KOG1078|consen 283 AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSF 362 (865)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 3445556664 56789999999999999999988765544444444444 899999999999999999999999999999
Q ss_pred hhhccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhcchh-HHHHHHHHHHHHHhCcccHHHHHHHHHHhhccCC
Q 002971 320 ATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYV-VQEAIIVIKDIFRRYPNTYESIIATLCESLDTLD 398 (862)
Q Consensus 320 ~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v-~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~ 398 (862)
+.+.+++|+.-++.+|..++.+||.....++++|-++|+..|.+- ...++.+|..++..+|+.++..+.+||++++++.
T Consensus 363 v~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce 442 (865)
T KOG1078|consen 363 VSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCE 442 (865)
T ss_pred HHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999988753 3446678999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhcccccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcccCCCChHH
Q 002971 399 EPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDL 478 (862)
Q Consensus 399 ~~~~~~~~~wilGEy~~~i~~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~~~~~~~~~i~~~l~~~~~~s~~~dv 478 (862)
.++.-..+..++|+-|....+|..+++.++++...|+..||+..++|++|+....+. .++.|..+|+.|..| .|-||
T Consensus 443 ~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~--l~~sI~vllkRc~~D-~Ddev 519 (865)
T KOG1078|consen 443 FTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVV--LLPSILVLLKRCLND-SDDEV 519 (865)
T ss_pred chHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCC--ccccHHHHHHHHhcC-chHHH
Confidence 999888899999999999999999999999999999999999999999999976664 688899999999866 67799
Q ss_pred HHHHHHHHHHhcCCHHHHHHhhccCCCCCCCCCccCChhHHHHHHHhcCcccccccCCcchhcccccccCCCCCCCCCCC
Q 002971 479 RDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTASRTDDEDYPN 558 (862)
Q Consensus 479 rdRA~~y~~ll~~~~~~~~~~v~~~~p~~~~~~~~~~~~ll~~l~~~~~~~~~vy~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (862)
||||.+|.+.+...... +..+.--....-..+|.++.+++ .|. |.+|... ...+....+..+.. .
T Consensus 520 RdrAtf~l~~l~~~~~~----l~~~~~~l~~s~~~le~~l~~y~---~~~----~~~~fd~---~~v~~~s~~~~~~~-~ 584 (865)
T KOG1078|consen 520 RDRATFYLKNLEEKDDV----LNQNYSGLFVSIPGLERSLVSYI---TGS----FATPFDI---KSVPVKSQAEEPAI-N 584 (865)
T ss_pred HHHHHHHHHHhhhhhhh----hcccccccccccchhHHHHHHHh---hcc----ccccchh---hcchhhcccccccc-c
Confidence 99999999998721111 11111111111234566777776 222 2222221 22221111100000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCCCCCCCCCCcccc
Q 002971 559 GSEQGYSDAPTHVADEGASPQTSSSNAPYAATRQPAPPPAAPVSPPVPDLLGDLIGLDNSAAIVPADQAAASPVPALPVV 638 (862)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~p~~~~~~~~~~~~~~l 638 (862)
+ .. . ......+..|.....+... .. =++.+....+|.++.++ ...++
T Consensus 585 ~-~~---k--~~~~~~~~~~~~~~~d~~~-~~---------l~~i~~~~~lgpl~kSs-----------------~~i~L 631 (865)
T KOG1078|consen 585 L-EL---K--QTLVKAPEKEKIPKVDEYA-AE---------LASIPEFKALGPLFKSS-----------------RPIEL 631 (865)
T ss_pred c-cc---c--ccccCCCcccCCCccchhH-HH---------HhccchhhhcCcccccc-----------------Cccee
Confidence 0 00 0 0000000000000000000 00 00001111122222221 12234
Q ss_pred ccCCCCCceE-EEEEEEeeCCeeEEEEEEEec-CCCCcccceeeecccccCcccCCCCCCCcCCCCCeeeEEEeeeecC-
Q 002971 639 LPASTGQGLQ-IGAELTRQDGQVFYSMLFENN-TQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQ- 715 (862)
Q Consensus 639 ~~~~~~~gL~-I~~~~~~~~~~~~l~l~~~N~-s~~~it~f~~q~~~n~~gl~~~~~~~~~~l~pg~~~~~~i~i~~~~- 715 (862)
.++.....++ +++.|. +++.+++.++|+ +++.+.+..++... +.|+......+.++|++||-.+...-+++++
T Consensus 632 TE~e~e~~v~~vKh~f~---~~~V~qf~~~Ntl~d~~L~~v~vv~~~-~~~~evl~~i~~~slpy~qp~~~~tl~~~p~~ 707 (865)
T KOG1078|consen 632 TEPEAEYVVKVVKHVFK---DHVVLQFDCTNTLNDQLLENVSVVLTP-TGGEEVLEKVPTMSLPYDQPGSAFTLVEFPKD 707 (865)
T ss_pred ccccceEEeeeeehhhc---cceEEEEeccCcchHHHHhhheeeecC-CCCceeeeeccccCCCCCCCcceEEEEEcCCC
Confidence 4444434444 555553 678999999999 66889998886654 4565444455677999999888888888884
Q ss_pred -CCCCC-CCCcceEEEEecCCC--Ce---EEEEeccccccccc----cCCCCChHHHHHHhccCCCCccceeecCCCccC
Q 002971 716 -NMSAG-PPSSLLQVAVKNNQQ--PV---WYFNDKISLHVLFT----EDGRMERGSFLETWRSLPDSNEVLKDLPGVVVS 784 (862)
Q Consensus 716 -~~~~~-~~~~~l~~~~k~~~~--~~---~~~~l~~Pl~~l~~----~~~~~~~~~F~~~W~~l~~~~E~~~~~~~~~~~ 784 (862)
|...+ ...++++|.+++-.+ |. -.|..++-+..+.. .-.+.-+.+|-..|..++. |...+|......
T Consensus 708 ~p~~v~~sf~~tlkFtvkdcdp~TgepdedGyeDEY~LEdlevtv~D~iqkv~k~NF~aawde~~~--e~eetF~Ls~~~ 785 (865)
T KOG1078|consen 708 DPWAIAEGFGNTLKFTVKDCDPNTGEPDDEGYEDEYVLEDLEVTVGDFVQKVRKSNFPAAWDELGF--EAEETFNLSTVK 785 (865)
T ss_pred CchhhhccceeeEEEEEEecCCCCCCCCccCcccceeeeceeeehhhhhhHhhcccchhhHHhcCc--chheeeeccccc
Confidence 34433 567889999976221 11 23566666555543 1224457899999999994 555566555444
Q ss_pred CH-HHHHHHHHhcCceeeeec--cCCCC--ceEEEEEEecCCccEEEEEEeecC--CCceEEEEecCCCchHHHHHHHH
Q 002971 785 NV-EATLDLLAASNMFFIAKR--KNANQ--DVFYFSAKIPPGVPFLIELTTVIG--NPGVKCAIKTPNPDIASLFFEAI 856 (862)
Q Consensus 785 ~~-~~~~~~l~~~~~~~v~~~--~~~~~--~~~~~s~~~~~~~~~L~~l~~~~~--~~~~~ltvrs~~~~v~~~l~~~i 856 (862)
+. +++.+++.-+|+..|.+. ++.|+ .+++++|.+.||+.+|+|.++... +-++++++||.+..+...|...+
T Consensus 786 tl~eAv~~Ii~~LgMqpcE~sd~vPenknsHtl~LsG~frgG~~vlvr~~ma~s~~~vtm~Vtvrs~e~~~vd~Iva~v 864 (865)
T KOG1078|consen 786 SIQEAVKKIIDLLGMQPCERTEKVPENKNSHTLLLSGVFRGGYKVLVRAKMALSSGGITMKVTVRSEDELVVDLIVALV 864 (865)
T ss_pred hHHHHHHHHHHHhCCccccccccCCCCCCceEEEEeeeeeCCceEEEeeeeeecCCCcEEEEEEecCCccHHHHHHHhc
Confidence 55 688889999999999863 33444 478898989999999999998743 26799999999999988887654
No 10
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-47 Score=419.43 Aligned_cols=399 Identities=23% Similarity=0.418 Sum_probs=353.7
Q ss_pred CCCCCCcccchHHHhH-hccCCCcchHHHHHHHHHHhcCCCCc-----HHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC
Q 002971 1 MTVGKDVSSLFTDVVN-CMQTENLELKKLVYLYLINYAKSQPD-----LAILAVNTFVKDSQDPNPLIRALAVRTMGCIR 74 (862)
Q Consensus 1 mt~G~dvs~lf~~vv~-l~~s~~~~~Kkl~Yl~l~~~~~~~~e-----l~~L~intl~kDl~~~n~~ir~lALr~l~~i~ 74 (862)
|.-|++++.++++|++ ++.++|.++||+.|+|++...+.++| .++|++|.++|||+|||+++||..||++|.++
T Consensus 48 mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQHPNEyiRG~TLRFLckLk 127 (948)
T KOG1058|consen 48 MLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQHPNEYIRGSTLRFLCKLK 127 (948)
T ss_pred HHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHHHhhhccCchHhhcchhhhhhhhcC
Confidence 4579999999999999 69999999999999999999988874 69999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhh-cCCChhHHHHHHHHHHHHhhcCCC
Q 002971 75 VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLI-SDNNPMVVANAVAALAEIEENSSR 153 (862)
Q Consensus 75 ~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~~~~~ 153 (862)
.+|+.+.++|.|+.||.|+++||||.|++|+..||+..-.++++ .-+.+...| .+.||.+..+|+..|..+.+..
T Consensus 128 E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pD--apeLi~~fL~~e~DpsCkRNAFi~L~~~D~Er-- 203 (948)
T KOG1058|consen 128 EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPD--APELIESFLLTEQDPSCKRNAFLMLFTTDPER-- 203 (948)
T ss_pred cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCC--hHHHHHHHHHhccCchhHHHHHHHHHhcCHHH--
Confidence 99999999999999999999999999999999999997777775 556666654 6999999999999999886553
Q ss_pred CcccccHHHHHHHHHHhcc---CChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccC
Q 002971 154 PIFEITSHTLSKLLTALNE---CTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELIT 230 (862)
Q Consensus 154 ~~~~l~~~~~~~Ll~~l~~---~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~ 230 (862)
.+.+|..++.+ .++-+|..|++++.+-+..++.+....++.+..+|++.+++|.|||+-++..+. +
T Consensus 204 --------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS---~ 272 (948)
T KOG1058|consen 204 --------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLS---N 272 (948)
T ss_pred --------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEcc---C
Confidence 46777776654 457789999999999888888888899999999999999999999999988763 4
Q ss_pred ChHHHHHHHHhcccchhhcc--cCChhHHHHHHHHHHHHHhhChhhhhccce-EEEecCCCcHHHHHHHHHHHHHhcCcC
Q 002971 231 STDVVRNLCKKMAPPLVTLL--SAEPEIQYVALRNINLIVQRRPTILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASDR 307 (862)
Q Consensus 231 ~~~~~~~~~~~~~~~L~~ll--s~~~~iry~aL~~l~~i~~~~p~~~~~~~~-~~~~l~~d~~~Ik~~~L~lL~~l~~~~ 307 (862)
+|.+++. ++..++.|+ .++.|++.+.|+.|..+...+..+++.... ++..+..+|..+|+++|++.+.|+...
T Consensus 273 ~p~alk~----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr 348 (948)
T KOG1058|consen 273 DPTALKA----AASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR 348 (948)
T ss_pred CHHHHHH----HHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc
Confidence 6777764 555677777 368899999999999999888888887654 667888999999999999999999999
Q ss_pred cHHHHHHHHHH-hhhhc------cHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCc
Q 002971 308 NIDQVLLEFKE-YATEV------DVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYP 380 (862)
Q Consensus 308 Nv~~Iv~eL~~-y~~~~------d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p 380 (862)
|+++|+.-|+. ...+. ...+|..++++|..||.+|+..+...|..+++++...++.....++..++..++++|
T Consensus 349 Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p 428 (948)
T KOG1058|consen 349 NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFP 428 (948)
T ss_pred cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCc
Confidence 99999999974 44332 245899999999999999999999999999999999998888899999999999999
Q ss_pred ccHHHHHHHHHHhhccCCchHHHHHHHHHHhhcccccC
Q 002971 381 NTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID 418 (862)
Q Consensus 381 ~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~ 418 (862)
+++..++.+|.+.+..+..+++...++||+|||+.-..
T Consensus 429 ~Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 429 NLRASIIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred hHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 99999999999999999999998999999999997544
No 11
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=100.00 E-value=8.4e-38 Score=333.16 Aligned_cols=469 Identities=15% Similarity=0.213 Sum_probs=392.1
Q ss_pred CcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCH-HHHhHHHHHhcCCChhhhHHHHHH
Q 002971 6 DVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP-LIRALAVRTMGCIRVDKITEYLCD 84 (862)
Q Consensus 6 dvs~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~-~ir~lALr~l~~i~~~~~~~~l~~ 84 (862)
.+..+|+.+.|+++++|..+|..+|+++..+..-..| .+|.++++.||++...| .+|..|+|+|-++...+++.....
T Consensus 62 ~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~ted-vlm~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~tv~~~er 140 (898)
T COG5240 62 TATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTED-VLMGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGETVYDFER 140 (898)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchh-hhHHHHHHHHhhccCCccccccHHHHHHHHhcCcchhhhHHH
Confidence 4567999999999999999999999999999988877 78999999999999877 999999999999999999999999
Q ss_pred HHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcC----------------CChhHHHHHHHHHHHHh
Q 002971 85 PLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISD----------------NNPMVVANAVAALAEIE 148 (862)
Q Consensus 85 ~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d----------------~d~~V~~~a~~~l~~i~ 148 (862)
.+..+..|+++.+|..|+...+|++-.+-+.+.. |.+..++..-| .++.-.++|+.+|+++.
T Consensus 141 ~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~r--w~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~k 218 (898)
T COG5240 141 YLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKR--WLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSK 218 (898)
T ss_pred HhhhhccccchhhhhhHHHHhhhhccccHHHHHH--HHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHh
Confidence 9999999999999999998888888777666654 88766655322 35667889999999997
Q ss_pred hcCCCCcccccHHHHHHHHHHhc----cCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 002971 149 ENSSRPIFEITSHTLSKLLTALN----ECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQ 224 (862)
Q Consensus 149 ~~~~~~~~~l~~~~~~~Ll~~l~----~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~ 224 (862)
+++.- ...+|++.+. ..+...-+.+++....+..++++....+-..+...+++...+|-+|++|.++.
T Consensus 219 r~dkm--------a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~ 290 (898)
T COG5240 219 RTDKM--------AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCA 290 (898)
T ss_pred cccHH--------HHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHH
Confidence 76531 2234444443 33555666677777666666665555555555667778889999999999998
Q ss_pred hhh-ccCChHHHHHHHHhcccchhhccc-CChhHHHHHHHHHHHHHhhChhhhhccceEEEecC-CCcHHHHHHHHHHHH
Q 002971 225 QME-LITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKY-NDPIYVKMEKLEIMI 301 (862)
Q Consensus 225 ~~~-~~~~~~~~~~~~~~~~~~L~~lls-~~~~iry~aL~~l~~i~~~~p~~~~~~~~~~~~l~-~d~~~Ik~~~L~lL~ 301 (862)
+.. ++ .++.+. ..+..|.++|+ ...-.||.|+|.|++|+..+|+.+.-+.+.+..+- +...+|..-|+..|.
T Consensus 291 ~~~~nv-~~~~~~----~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLL 365 (898)
T COG5240 291 LSEENV-GSQFVD----QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLL 365 (898)
T ss_pred HHHhcc-CHHHHH----HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHH
Confidence 632 22 233333 35566778885 56689999999999999999987655444444333 445889999999999
Q ss_pred HhcCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhcchh-HHHHHHHHHHHHHhCc
Q 002971 302 KLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYV-VQEAIIVIKDIFRRYP 380 (862)
Q Consensus 302 ~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v-~~e~i~~l~~i~~~~p 380 (862)
+.++++|+..+++.+..|+.+..+.|+.-+|.++..++.+||..-..|+++|...|...|.+- ...++.++.+++...|
T Consensus 366 KTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p 445 (898)
T COG5240 366 KTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDP 445 (898)
T ss_pred HcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCc
Confidence 999999999999999999999999999999999999999999999999999999999888764 4456779999999999
Q ss_pred ccHHHHHHHHHHhhccCCchHHHHHHHHHHhhcccccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHH
Q 002971 381 NTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQ 460 (862)
Q Consensus 381 ~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~~~~~~~~ 460 (862)
+.++.+++.||+++++++++++...+..|+|+-|..-++|..++++++++...|+..||.+.+.|+.|++....+.-..+
T Consensus 446 ~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~ 525 (898)
T COG5240 446 DSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQ 525 (898)
T ss_pred hHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHH
Confidence 99999999999999999999998889999999999999999999999999999999999999999999998765543577
Q ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHhcC
Q 002971 461 MIQVVLNNATVETDNPDLRDRAYIYWRLLST 491 (862)
Q Consensus 461 ~i~~~l~~~~~~s~~~dvrdRA~~y~~ll~~ 491 (862)
.+..+|+.|.+| .|-||||||.+..+-+..
T Consensus 526 sv~~~lkRclnD-~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 526 SVENALKRCLND-QDDEVRDRASFLLRNMRL 555 (898)
T ss_pred HHHHHHHHHhhc-ccHHHHHHHHHHHHhhhh
Confidence 899999999855 778999999999998873
No 12
>PF02296 Alpha_adaptin_C: Alpha adaptin AP2, C-terminal domain; InterPro: IPR003164 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. AP adaptor alpha-adaptin can be divided into a trunk domain and the C-terminal appendage domain (or ear domain), separated by a linker region. The C-terminal appendage domain regulates translocation of endocytic accessory proteins to the bud site []. This entry represents a subdomain of the appendage (ear) domain of alpha-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1KYF_A 1B9K_A 1QTS_A 1KYU_A 2VJ0_A 1KY6_A 1W80_A 3HS8_A 1KYD_A 1QTP_A ....
Probab=99.70 E-value=4.3e-17 Score=146.72 Aligned_cols=105 Identities=12% Similarity=0.220 Sum_probs=82.4
Q ss_pred cccCCCCChHHHHHHhccCCC-CccceeecC---CCccCCHHHHHHHHHhcCceeeeeccCCCCceEEEEEEec----CC
Q 002971 750 FTEDGRMERGSFLETWRSLPD-SNEVLKDLP---GVVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIP----PG 821 (862)
Q Consensus 750 ~~~~~~~~~~~F~~~W~~l~~-~~E~~~~~~---~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~s~~~~----~~ 821 (862)
|++|.+|+.++|++||++|++ .+|.|..++ ...+++.+.+.++|.++|+.++. ++|||+++++.++.+- ++
T Consensus 1 F~~p~~l~~~~Ff~RWkql~~~~~E~Q~vf~~~~~~~~~~~~~~~~~l~g~~~~vl~-~vDpnp~n~v~Agi~~t~~~g~ 79 (113)
T PF02296_consen 1 FMEPTTLSSEDFFQRWKQLGGPPQEAQEVFKLKDAKRPMDLESIRRKLEGFGFAVLD-GVDPNPNNIVGAGIFHTKSSGN 79 (113)
T ss_dssp GEEE----HHHHHHHHTTT-SGGGEEEEEEE----SS---HHHHHHHHHHHTSEEET-SSSSSTTSEEEEEEEE-S-S-E
T ss_pred CCCCccCCHHHHHHHHHhccCCccccEEEEcccccCCcccHHHHHHHHhcCCeEecC-CCCCCcccEEEEEEEEecCCCc
Confidence 457999999999999999998 589899888 56678889999999999998886 6999999776644432 56
Q ss_pred ccEEEEEEeecCCCceEEEEecCCCchHHHHHHH
Q 002971 822 VPFLIELTTVIGNPGVKCAIKTPNPDIASLFFEA 855 (862)
Q Consensus 822 ~~~L~~l~~~~~~~~~~ltvrs~~~~v~~~l~~~ 855 (862)
+|||+|+|++.++++|||||||+++.++..|+++
T Consensus 80 ~gcLlRlE~n~~~~~~RlTvRst~~~vs~~l~~l 113 (113)
T PF02296_consen 80 VGCLLRLEPNQDAKMFRLTVRSTDPSVSKALCKL 113 (113)
T ss_dssp EEEEEEEEEETTTTEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEEEEeECCcCCeEEEEEEECChhHHHHHhcC
Confidence 9999999999888899999999999999998874
No 13
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=99.47 E-value=2.7e-13 Score=124.49 Aligned_cols=111 Identities=46% Similarity=0.735 Sum_probs=86.2
Q ss_pred cccCCCCChHHHHHHhccCCCCc--cceeecCCCccCCHHHHHHHHHhcCceeeeeccCC-CCceEEEEEEecCCccEEE
Q 002971 750 FTEDGRMERGSFLETWRSLPDSN--EVLKDLPGVVVSNVEATLDLLAASNMFFIAKRKNA-NQDVFYFSAKIPPGVPFLI 826 (862)
Q Consensus 750 ~~~~~~~~~~~F~~~W~~l~~~~--E~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~-~~~~~~~s~~~~~~~~~L~ 826 (862)
|.+++.|++++|.++|+++++.+ |.+.... ....+.+.+.++|+.+|++.+++|..+ +...+|+|+++.+|..+|+
T Consensus 1 f~~d~~~~~~~F~~~W~sl~~~~~~e~~~~~~-~~~~~~~~i~~~L~~~nI~~iA~~~~~~~~~~~y~s~~~~~~~~fL~ 79 (114)
T PF09066_consen 1 FVEDGSMDPEEFQEMWKSLPDSNQQELSIQLN-ASVPSPDAIEEKLQANNIFTIASGKVDNGQKFFYFSAKTTNGIWFLV 79 (114)
T ss_dssp B-TT----HHHHHHHHHHS-GGG--EEEEEET-T----HHHHHHHHHCTT-EEEEEEECTT-EEEEEEEEEBTTS-EEEE
T ss_pred CCCCCccCHHHHHHHHHhCCcccceEEEEecc-ccCCcHHHHHHHHHHCCEEEEecCCCCccccEEEEEEEcCCCcEEEE
Confidence 45789999999999999999877 5555555 355788999999999999999987665 4889999999999999999
Q ss_pred EEEeecCCCceEEEEecCCCchHHHHHHHHHHHHh
Q 002971 827 ELTTVIGNPGVKCAIKTPNPDIASLFFEAIETLLK 861 (862)
Q Consensus 827 ~l~~~~~~~~~~ltvrs~~~~v~~~l~~~i~~~l~ 861 (862)
++.++.++..+++++||+++.+++++.+++..+|+
T Consensus 80 El~~~~~~~~~~v~vK~~~~~~~~~f~~~~~~iL~ 114 (114)
T PF09066_consen 80 ELTIDPGSPSVKVTVKSENPEMAPLFLQLFESILK 114 (114)
T ss_dssp EEEE-TT-SSEEEEEEESSCCCHHHHHHHHHHHCC
T ss_pred EEEEcCCCccEEEEEecCCHHHHHHHHHHHHHHhC
Confidence 99999877799999999999999999999999875
No 14
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.43 E-value=1.9e-11 Score=143.99 Aligned_cols=356 Identities=17% Similarity=0.244 Sum_probs=154.3
Q ss_pred hHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHH-HHHHHHhhcCCCCHHHHhHHHHHhcCC-Chhh----hHHHHHH
Q 002971 11 FTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAIL-AVNTFVKDSQDPNPLIRALAVRTMGCI-RVDK----ITEYLCD 84 (862)
Q Consensus 11 f~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L-~intl~kDl~~~n~~ir~lALr~l~~i-~~~~----~~~~l~~ 84 (862)
.+.+.+++.+++..+||-+.+++..+.+..|++.-- .+..+.+-+.|+|+.+++.|+..+..+ ..++ +.+.+..
T Consensus 116 ~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~ 195 (526)
T PF01602_consen 116 IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKSLIPKLIR 195 (526)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTTHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhhhHHHHHH
Confidence 444445555555555555555555555555554333 355555555555555555555555555 2222 2344444
Q ss_pred HHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHH
Q 002971 85 PLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLS 164 (862)
Q Consensus 85 ~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~ 164 (862)
.+.+.+.+.+|.++-+++-.+.++....++......+++.+..+|.+.++.|+..|+.++..+.... .+....+.
T Consensus 196 ~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~-----~~~~~~~~ 270 (526)
T PF01602_consen 196 ILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSP-----ELLQKAIN 270 (526)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSH-----HHHHHHHH
T ss_pred HhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcch-----HHHHhhHH
Confidence 4444445555555555444444444333333210124455555555555555555555555443221 12222333
Q ss_pred HHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhc-CCChHHHHHHHHHHHHhhhccCChHHHHHHHHhcc
Q 002971 165 KLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQ-HANCAVVLSAVKMILQQMELITSTDVVRNLCKKMA 243 (862)
Q Consensus 165 ~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~-~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~ 243 (862)
.|.+.+...++=.+...|+.|..+....+..... .......+. +.+..|...++.++..+. +++-... ++
T Consensus 271 ~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~-~~~~~~~l~~~~d~~Ir~~~l~lL~~l~----~~~n~~~----Il 341 (526)
T PF01602_consen 271 PLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFN-QSLILFFLLYDDDPSIRKKALDLLYKLA----NESNVKE----IL 341 (526)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGT-HHHHHHHHHCSSSHHHHHHHHHHHHHH------HHHHHH----HH
T ss_pred HHHHHhhcccchhehhHHHHHHHhhcccchhhhh-hhhhhheecCCCChhHHHHHHHHHhhcc----cccchhh----HH
Confidence 3434444334434444555554444433222221 111111222 444555555555555442 2222222 22
Q ss_pred cchhhcc-cC-ChhHHHHHHHHHHHHHhhChhhhhccceEE-EecCCCcHHHHHHHHHHHHHhc--CcCcHHHHHHHHHH
Q 002971 244 PPLVTLL-SA-EPEIQYVALRNINLIVQRRPTILAHEIKVF-FCKYNDPIYVKMEKLEIMIKLA--SDRNIDQVLLEFKE 318 (862)
Q Consensus 244 ~~L~~ll-s~-~~~iry~aL~~l~~i~~~~p~~~~~~~~~~-~~l~~d~~~Ik~~~L~lL~~l~--~~~Nv~~Iv~eL~~ 318 (862)
+-|...+ .. ++.+|-.+++.|..++.++|......+..+ ..+.....++....+..+..+. +++.-..++..|.+
T Consensus 342 ~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~ 421 (526)
T PF01602_consen 342 DELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIE 421 (526)
T ss_dssp HHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHH
T ss_pred HHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHH
Confidence 2233333 22 444555555555555555544333333221 1222223344444444444432 22334445555555
Q ss_pred hhhh-ccHHHHHHHHHHHHHHHHhhhH--hHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCc
Q 002971 319 YATE-VDVDFVRKAVRAIGRCAIKLER--AAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYP 380 (862)
Q Consensus 319 y~~~-~d~~~~~~~i~~I~~la~k~~~--~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p 380 (862)
++.+ .++++++.+++.||..+...+. ....++..+.+.+......+...++..+.++..++|
T Consensus 422 ~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~ 486 (526)
T PF01602_consen 422 LLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNP 486 (526)
T ss_dssp HHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCC
Confidence 5443 3344555555555555554443 333444444444433333344444445555555554
No 15
>PTZ00429 beta-adaptin; Provisional
Probab=99.18 E-value=2.7e-08 Score=118.27 Aligned_cols=170 Identities=15% Similarity=0.144 Sum_probs=96.4
Q ss_pred HHHHHhhcCCCCHHHHhHHHHHh-cCCC-hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHH
Q 002971 48 VNTFVKDSQDPNPLIRALAVRTM-GCIR-VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESL 125 (862)
Q Consensus 48 intl~kDl~~~n~~ir~lALr~l-~~i~-~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l 125 (862)
++-|++.|+++|..-|.-|++.+ +.+. +.++ ..+.+.|.+++.+.+.-+||-..+.+....+..||+..- .++.+
T Consensus 34 ~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~Dv-S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL--aINtl 110 (746)
T PTZ00429 34 GAELQNDLNGTDSYRKKAAVKRIIANMTMGRDV-SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL--AVNTF 110 (746)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCc-hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH--HHHHH
Confidence 34456777777766666666533 2221 2233 345666666777777777777777777777767775431 45666
Q ss_pred HHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHH--HHHHHHHH
Q 002971 126 KDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADARE--AENIVERV 203 (862)
Q Consensus 126 ~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~--~~~il~~v 203 (862)
.+=+.|+||.+.+.|+..+..|... .+....+..+.+.+.+.+|+..-...-.+.++...+++. ...+++.+
T Consensus 111 ~KDl~d~Np~IRaLALRtLs~Ir~~------~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L 184 (746)
T PTZ00429 111 LQDTTNSSPVVRALAVRTMMCIRVS------SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDL 184 (746)
T ss_pred HHHcCCCCHHHHHHHHHHHHcCCcH------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHH
Confidence 6666677777777777777665321 122223344445556677776543322222222222222 12345555
Q ss_pred HHhhcCCChHHHHHHHHHHHHhh
Q 002971 204 TPRLQHANCAVVLSAVKMILQQM 226 (862)
Q Consensus 204 ~~~l~~~n~aV~~eai~~i~~~~ 226 (862)
..++...|+.|+..|+.++..+.
T Consensus 185 ~~LL~D~dp~Vv~nAl~aL~eI~ 207 (746)
T PTZ00429 185 VELLNDNNPVVASNAAAIVCEVN 207 (746)
T ss_pred HHHhcCCCccHHHHHHHHHHHHH
Confidence 66677777777777777776653
No 16
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=99.17 E-value=2.3e-10 Score=106.38 Aligned_cols=85 Identities=22% Similarity=0.306 Sum_probs=74.9
Q ss_pred CccccccCCCCCceEEEEEEEeeCC-----eeEEEEEEEecCCCCcccceeeecccccCcccCCCCCCCcCCCCCeeeEE
Q 002971 634 ALPVVLPASTGQGLQIGAELTRQDG-----QVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTL 708 (862)
Q Consensus 634 ~~~~l~~~~~~~gL~I~~~~~~~~~-----~~~l~l~~~N~s~~~it~f~~q~~~n~~gl~~~~~~~~~~l~pg~~~~~~ 708 (862)
...++++...|+||.|.|+|.|+++ +..|+++|+|+++.+++++++.-++-.-|+.++.+..++.|+||+++++.
T Consensus 56 k~~eLL~~v~G~GL~v~Y~F~RqP~~~s~~mvsIql~ftN~s~~~i~~I~i~~k~l~~g~~i~~F~~I~~L~pg~s~t~~ 135 (145)
T PF14796_consen 56 KKYELLNRVNGKGLSVEYRFSRQPSLYSPSMVSIQLTFTNNSDEPIKNIHIGEKKLPAGMRIHEFPEIESLEPGASVTVS 135 (145)
T ss_pred ceEEeeeccCCCceeEEEEEccCCcCCCCCcEEEEEEEEecCCCeecceEECCCCCCCCcEeeccCcccccCCCCeEEEE
Confidence 4668999999999999999999763 56899999999999999999954443669999999999999999999999
Q ss_pred EeeeecCCCC
Q 002971 709 LPMVLFQNMS 718 (862)
Q Consensus 709 i~i~~~~~~~ 718 (862)
+.|+|++..+
T Consensus 136 lgIDF~DStQ 145 (145)
T PF14796_consen 136 LGIDFNDSTQ 145 (145)
T ss_pred EEEecccCCC
Confidence 9999998653
No 17
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.04 E-value=2.8e-08 Score=123.30 Aligned_cols=270 Identities=18% Similarity=0.150 Sum_probs=136.8
Q ss_pred HHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHH
Q 002971 48 VNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKD 127 (862)
Q Consensus 48 intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~ 127 (862)
++.|..-|.|++|.+|-.|+..|+.+..++.++ .+.++|.|+++.||..|+.++.++-...+. .+.+..
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~----~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~~~L~~ 691 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTPPGFGP----ALVAALGDGAAAVRRAAAEGLRELVEVLPP-------APALRD 691 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcchhHHH----HHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------hHHHHH
Confidence 445556666666666666666666666554333 344556666666666666666655321111 134455
Q ss_pred hhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhh
Q 002971 128 LISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRL 207 (862)
Q Consensus 128 lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l 207 (862)
+|.|.|+.|..+|+.+|..+...+ ...|+..|.+.+++.+...++.|..+... +.+...+
T Consensus 692 ~L~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~~---------~~l~~~l 751 (897)
T PRK13800 692 HLGSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDDV---------ESVAGAA 751 (897)
T ss_pred HhcCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccCc---------HHHHHHh
Confidence 566666666666666665543211 12334455566666666666666554211 1234456
Q ss_pred cCCChHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhChhhhhccceEEEecC
Q 002971 208 QHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKY 286 (862)
Q Consensus 208 ~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~~~~~~~~~~~~l~ 286 (862)
.+.++.|..+++..+..+. +... ...+.|..++ ..++.+|..++..|..+.... ..... ....+.
T Consensus 752 ~D~~~~VR~~aa~aL~~~~----~~~~------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~-~~~~~---l~~aL~ 817 (897)
T PRK13800 752 TDENREVRIAVAKGLATLG----AGGA------PAGDAVRALTGDPDPLVRAAALAALAELGCPP-DDVAA---ATAALR 817 (897)
T ss_pred cCCCHHHHHHHHHHHHHhc----cccc------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc-hhHHH---HHHHhc
Confidence 6666666666666655432 1110 0112234444 345666666666665553211 11000 111234
Q ss_pred CCcHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhcchhHH
Q 002971 287 NDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQ 366 (862)
Q Consensus 287 ~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~ 366 (862)
+++..||..+++.|-.+.+++-+ .-|...+.+.+..+|..++++++.+. . .....+.|...++.....|..
T Consensus 818 d~d~~VR~~Aa~aL~~l~~~~a~----~~L~~~L~D~~~~VR~~A~~aL~~~~--~---~~~a~~~L~~al~D~d~~Vr~ 888 (897)
T PRK13800 818 ASAWQVRQGAARALAGAAADVAV----PALVEALTDPHLDVRKAAVLALTRWP--G---DPAARDALTTALTDSDADVRA 888 (897)
T ss_pred CCChHHHHHHHHHHHhccccchH----HHHHHHhcCCCHHHHHHHHHHHhccC--C---CHHHHHHHHHHHhCCCHHHHH
Confidence 55566666666666665543322 33333445566666666666665541 1 112344444555555445555
Q ss_pred HHHHH
Q 002971 367 EAIIV 371 (862)
Q Consensus 367 e~i~~ 371 (862)
+++..
T Consensus 889 ~A~~a 893 (897)
T PRK13800 889 YARRA 893 (897)
T ss_pred HHHHH
Confidence 44443
No 18
>PRK09687 putative lyase; Provisional
Probab=99.04 E-value=8.4e-09 Score=109.86 Aligned_cols=252 Identities=16% Similarity=0.153 Sum_probs=164.7
Q ss_pred HHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHH
Q 002971 46 LAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESL 125 (862)
Q Consensus 46 L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l 125 (862)
..++.|.+=|.|+|..+|..|+..|+.++.++..+. +.+++.|.++.||+.|+.++..+-. ++... ...++.|
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~----l~~ll~~~d~~vR~~A~~aLg~lg~--~~~~~-~~a~~~L 95 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGGQDVFRL----AIELCSSKNPIERDIGADILSQLGM--AKRCQ-DNVFNIL 95 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCcchHHHH----HHHHHhCCCHHHHHHHHHHHHhcCC--Cccch-HHHHHHH
Confidence 345667777899999999999999999998776665 5667899999999999999998743 22111 1256777
Q ss_pred HHh-hcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHH
Q 002971 126 KDL-ISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVT 204 (862)
Q Consensus 126 ~~l-L~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~ 204 (862)
..+ ++|+++.|..+|+.+|.+++.... .|. ...++.+.
T Consensus 96 ~~l~~~D~d~~VR~~A~~aLG~~~~~~~----------------------~~~-------------------~~a~~~l~ 134 (280)
T PRK09687 96 NNLALEDKSACVRASAINATGHRCKKNP----------------------LYS-------------------PKIVEQSQ 134 (280)
T ss_pred HHHHhcCCCHHHHHHHHHHHhccccccc----------------------ccc-------------------hHHHHHHH
Confidence 766 789999999999999988753221 010 01123334
Q ss_pred HhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhChhhhhccceEEE
Q 002971 205 PRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFF 283 (862)
Q Consensus 205 ~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~~~~~~~~~~~ 283 (862)
..+.+.++-|.+.++..+..+ .+++. ++.|+.+| +.++.+|+.+...|..+....|..+.. .+.
T Consensus 135 ~~~~D~~~~VR~~a~~aLg~~----~~~~a--------i~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~---L~~ 199 (280)
T PRK09687 135 ITAFDKSTNVRFAVAFALSVI----NDEAA--------IPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREA---FVA 199 (280)
T ss_pred HHhhCCCHHHHHHHHHHHhcc----CCHHH--------HHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHH---HHH
Confidence 455666777777777776543 34443 23455566 456778888888877773334433321 111
Q ss_pred ecCCCcHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh-hhcc
Q 002971 284 CKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIK-IKVN 362 (862)
Q Consensus 284 ~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~-~~~~ 362 (862)
.+.+++..||..++.-|-.+.++.-+..+++ ++.+.+ ++..++.++|.++.. ..+..|.+++. ....
T Consensus 200 ~L~D~~~~VR~~A~~aLg~~~~~~av~~Li~----~L~~~~--~~~~a~~ALg~ig~~------~a~p~L~~l~~~~~d~ 267 (280)
T PRK09687 200 MLQDKNEEIRIEAIIGLALRKDKRVLSVLIK----ELKKGT--VGDLIIEAAGELGDK------TLLPVLDTLLYKFDDN 267 (280)
T ss_pred HhcCCChHHHHHHHHHHHccCChhHHHHHHH----HHcCCc--hHHHHHHHHHhcCCH------hHHHHHHHHHhhCCCh
Confidence 3456668888888888888777544444444 444433 566788888877653 56777777776 4444
Q ss_pred hhHHHHHHHH
Q 002971 363 YVVQEAIIVI 372 (862)
Q Consensus 363 ~v~~e~i~~l 372 (862)
++...++..+
T Consensus 268 ~v~~~a~~a~ 277 (280)
T PRK09687 268 EIITKAIDKL 277 (280)
T ss_pred hHHHHHHHHH
Confidence 5555554443
No 19
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.03 E-value=1.2e-06 Score=112.15 Aligned_cols=292 Identities=12% Similarity=0.112 Sum_probs=193.7
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHHH-hcccchhhcc-cCChhHHHHHHHHHHHHHhhChh---hh
Q 002971 201 ERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPT---IL 275 (862)
Q Consensus 201 ~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~-~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~---~~ 275 (862)
..+..+++..+.-+.-.++.++.++.. .+.+..+.+.. ..++.|+.+| +.+.++|..+++.+..|+..+++ .+
T Consensus 407 k~LV~LL~~~~~evQ~~Av~aL~~L~~--~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aI 484 (2102)
T PLN03200 407 KVLVGLITMATADVQEELIRALSSLCC--GKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAI 484 (2102)
T ss_pred hhhhhhhccCCHHHHHHHHHHHHHHhC--CCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 445677788888898899988877643 23444444333 3567788888 46789999999999999875542 22
Q ss_pred hcc--ce-EEEecCCCcHHHHHHHHHHHHHhcC-cCcHHHHHH------HHHHhhhhccHHHHHHHHHHHHHHHHhhhHh
Q 002971 276 AHE--IK-VFFCKYNDPIYVKMEKLEIMIKLAS-DRNIDQVLL------EFKEYATEVDVDFVRKAVRAIGRCAIKLERA 345 (862)
Q Consensus 276 ~~~--~~-~~~~l~~d~~~Ik~~~L~lL~~l~~-~~Nv~~Iv~------eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~ 345 (862)
..+ +. ...++.+.+..+|..+.-.|..++. ++|+..++. -|.+.+.+.+...++.++.+|..++....
T Consensus 485 ieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d-- 562 (2102)
T PLN03200 485 TAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD-- 562 (2102)
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc--
Confidence 211 22 2335667788999999999999984 557666553 46778888899999999999999876432
Q ss_pred HHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCcc--cH------HHHHHHHHHhhccCCchHHHHHHHHHHhhccccc
Q 002971 346 AERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPN--TY------ESIIATLCESLDTLDEPEAKASMIWIIGEYAERI 417 (862)
Q Consensus 346 ~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~--~~------~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i 417 (862)
...+..++.++...+..+...++.++..|+.--.. .+ ...++.|.+.++. ..++.++.++|+|+.|+..-
T Consensus 563 -~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~s-gs~~ikk~Aa~iLsnL~a~~ 640 (2102)
T PLN03200 563 -AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSS-SKEETQEKAASVLADIFSSR 640 (2102)
T ss_pred -hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCC
Confidence 23456678888777766666666666666542111 11 2357777777764 35678888999999998633
Q ss_pred CCH------HHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChH-----HHHHHHHHhcccCCCChHHHHHHHHHH
Q 002971 418 DNA------DELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQ-----QMIQVVLNNATVETDNPDLRDRAYIYW 486 (862)
Q Consensus 418 ~~~------~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~~~~~~~-----~~i~~~l~~~~~~s~~~dvrdRA~~y~ 486 (862)
.+. ...+..++..+...+.++|...-.|+..++.....+... ..+..+.++. .+.|.++++-|..-.
T Consensus 641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL--~~~d~~v~e~Al~AL 718 (2102)
T PLN03200 641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLA--KSSSIEVAEQAVCAL 718 (2102)
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHH--hCCChHHHHHHHHHH
Confidence 221 122344555555677788888888888888532221011 1244455553 346789999999887
Q ss_pred HHhcCCHHHHHHhh
Q 002971 487 RLLSTDPEAAKDVV 500 (862)
Q Consensus 487 ~ll~~~~~~~~~~v 500 (862)
..+-.+++....+.
T Consensus 719 anLl~~~e~~~ei~ 732 (2102)
T PLN03200 719 ANLLSDPEVAAEAL 732 (2102)
T ss_pred HHHHcCchHHHHHH
Confidence 66666666555544
No 20
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.02 E-value=5.7e-08 Score=120.56 Aligned_cols=257 Identities=19% Similarity=0.183 Sum_probs=174.4
Q ss_pred HHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHH
Q 002971 60 PLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVAN 139 (862)
Q Consensus 60 ~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~ 139 (862)
+..|-+|+..|.. + ..+.+.+.|.|++|.||+.|+.++.++.. ...++.|..+|+|.|+.|...
T Consensus 608 ~~~~~~~~~~l~~---~-----~~~~L~~~L~D~d~~VR~~Av~~L~~~~~--------~~~~~~L~~aL~D~d~~VR~~ 671 (897)
T PRK13800 608 PSPRILAVLALDA---P-----SVAELAPYLADPDPGVRRTAVAVLTETTP--------PGFGPALVAALGDGAAAVRRA 671 (897)
T ss_pred chHHHHHHHhccc---h-----hHHHHHHHhcCCCHHHHHHHHHHHhhhcc--------hhHHHHHHHHHcCCCHHHHHH
Confidence 4455566766622 2 33456778889999999999999998742 236688889999999999999
Q ss_pred HHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHH
Q 002971 140 AVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAV 219 (862)
Q Consensus 140 a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai 219 (862)
|+.+|.++....+. ...|...|.+.+++.+...++.|......+. ..+...+++.++.|..+|+
T Consensus 672 Aa~aL~~l~~~~~~---------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~-------~~l~~~L~D~d~~VR~~Av 735 (897)
T PRK13800 672 AAEGLRELVEVLPP---------APALRDHLGSPDPVVRAAALDVLRALRAGDA-------ALFAAALGDPDHRVRIEAV 735 (897)
T ss_pred HHHHHHHHHhccCc---------hHHHHHHhcCCCHHHHHHHHHHHHhhccCCH-------HHHHHHhcCCCHHHHHHHH
Confidence 99999888543221 2345566777899999999998887654332 2345678899999999999
Q ss_pred HHHHHhhhccCChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhChhhhhccceEEEecCCCcHHHHHHHHH
Q 002971 220 KMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLE 298 (862)
Q Consensus 220 ~~i~~~~~~~~~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~ 298 (862)
+.+..+ ..++ .|..++ ..++++|..+...|..+....+..+.. ....+.+++..||..++.
T Consensus 736 ~aL~~~----~~~~-----------~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~---L~~ll~D~d~~VR~aA~~ 797 (897)
T PRK13800 736 RALVSV----DDVE-----------SVAGAATDENREVRIAVAKGLATLGAGGAPAGDA---VRALTGDPDPLVRAAALA 797 (897)
T ss_pred HHHhcc----cCcH-----------HHHHHhcCCCHHHHHHHHHHHHHhccccchhHHH---HHHHhcCCCHHHHHHHHH
Confidence 988754 2222 233445 467889999988888886554321111 112344666888888888
Q ss_pred HHHHhcCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhcchhHHHHHHHHHHH
Q 002971 299 IMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDI 375 (862)
Q Consensus 299 lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i 375 (862)
.|-.+.++..+ ...|...+.+.|..+|..++.+++.+.. +..++.|+.+|++....|..+++..|..+
T Consensus 798 aLg~~g~~~~~---~~~l~~aL~d~d~~VR~~Aa~aL~~l~~------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 798 ALAELGCPPDD---VAAATAALRASAWQVRQGAARALAGAAA------DVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHhcCCcchh---HHHHHHHhcCCChHHHHHHHHHHHhccc------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 88887765332 2335555667777788888888876542 23456667777666666666666665543
No 21
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.96 E-value=8.5e-07 Score=113.38 Aligned_cols=330 Identities=16% Similarity=0.179 Sum_probs=215.5
Q ss_pred HhHhccCCCcchHHHHHHHHHHhcCCCCcHHHH-----HHHHHHhhcCCCCHHHHhHHHHHhcCCC--hhhhHH-----H
Q 002971 14 VVNCMQTENLELKKLVYLYLINYAKSQPDLAIL-----AVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITE-----Y 81 (862)
Q Consensus 14 vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L-----~intl~kDl~~~n~~ir~lALr~l~~i~--~~~~~~-----~ 81 (862)
.+.++.+.+.+.+.=+-..+..+...+.+.... .++.|.+-|.+.++.+|-.|++++++|. +++-.. -
T Consensus 409 LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaG 488 (2102)
T PLN03200 409 LVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAG 488 (2102)
T ss_pred hhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 455666677777777777777777776664332 4677889999999999999999999885 333232 4
Q ss_pred HHHHHHhhhCCCChHHHHHHHHHHHHHHhhccc---cccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccc
Q 002971 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI 158 (862)
Q Consensus 82 l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l 158 (862)
.+|.+.++|.++++.+|+.|+.++..+....++ .+.+.+.++.|.++|++.++.+...|+.+|..+......
T Consensus 489 aIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~----- 563 (2102)
T PLN03200 489 GIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA----- 563 (2102)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch-----
Confidence 579999999999999999999999999874433 344457889999999999999999999999998765321
Q ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHhhccc-ccHHH-------HHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccC
Q 002971 159 TSHTLSKLLTALNECTEWGQVFILDALSRYKA-ADARE-------AENIVERVTPRLQHANCAVVLSAVKMILQQMELIT 230 (862)
Q Consensus 159 ~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~-~~~~~-------~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~ 230 (862)
..++.++..+...++-.+..+++.|..... .+.++ ....++.+..+++|.+..+.-+|+.++.++.. .
T Consensus 564 --~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a--~ 639 (2102)
T PLN03200 564 --ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFS--S 639 (2102)
T ss_pred --hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhc--C
Confidence 234666776766666777777887765432 11111 12357788889999999999999999888753 2
Q ss_pred ChHHHHH-HHHhcccchhhccc-CChhHHHHHHHHHHHHHhhChhhhhccceEEEecCCCcHHHHHHHHHHHHHhcCcCc
Q 002971 231 STDVVRN-LCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRN 308 (862)
Q Consensus 231 ~~~~~~~-~~~~~~~~L~~lls-~~~~iry~aL~~l~~i~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~N 308 (862)
+++.... +....+++|+.+|+ ++.+++.-+-.+|..+......- . +. .++..
T Consensus 640 ~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~--------------q------~~----~~v~~-- 693 (2102)
T PLN03200 640 RQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKEN--------------R------KV----SYAAE-- 693 (2102)
T ss_pred ChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHH--------------H------HH----HHHHc--
Confidence 3443322 23467888999884 67778888888888777421100 0 00 00000
Q ss_pred HHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhHh----HHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCc
Q 002971 309 IDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERA----AERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYP 380 (862)
Q Consensus 309 v~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~----~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p 380 (862)
.++.-|.+.+++.|.+++..++.+++.++..-+.. ....+..|+++|+.+.+.....+...+.++.++.|
T Consensus 694 --GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 694 --DAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred --CCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence 01222333334445555555555555554432211 12335556666666655555555556666655554
No 22
>PRK09687 putative lyase; Provisional
Probab=98.94 E-value=2.3e-07 Score=98.96 Aligned_cols=221 Identities=15% Similarity=0.134 Sum_probs=156.6
Q ss_pred HHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhh-HHHHHHHHHhh-h
Q 002971 13 DVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKI-TEYLCDPLQRC-L 90 (862)
Q Consensus 13 ~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~-~~~l~~~v~~~-l 90 (862)
+.+.++.++|..++.-+--.+..+. .++. ...+.+-++|+|+.+|..|.+.|+.++.+.- .+...+.+..+ +
T Consensus 27 ~L~~~L~d~d~~vR~~A~~aL~~~~--~~~~----~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~ 100 (280)
T PRK09687 27 ELFRLLDDHNSLKRISSIRVLQLRG--GQDV----FRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL 100 (280)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcC--cchH----HHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh
Confidence 3456778889988888777777664 2333 3334555789999999999999999986542 23445556655 6
Q ss_pred CCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHh
Q 002971 91 KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTAL 170 (862)
Q Consensus 91 ~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l 170 (862)
.|+++.||+.|+.++.++....+... ....+.+..++.|.|+.|...|+.+|.++.. ...+..|+..+
T Consensus 101 ~D~d~~VR~~A~~aLG~~~~~~~~~~--~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----------~~ai~~L~~~L 168 (280)
T PRK09687 101 EDKSACVRASAINATGHRCKKNPLYS--PKIVEQSQITAFDKSTNVRFAVAFALSVIND----------EAAIPLLINLL 168 (280)
T ss_pred cCCCHHHHHHHHHHHhcccccccccc--hHHHHHHHHHhhCCCHHHHHHHHHHHhccCC----------HHHHHHHHHHh
Confidence 89999999999999998854332222 2366778888999999999999999977642 23578888889
Q ss_pred ccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhcc
Q 002971 171 NECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL 250 (862)
Q Consensus 171 ~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~ll 250 (862)
.+.++|........|......++ ...+.+...+.+.+..|..+|+..+..+ .++.. +++|+..|
T Consensus 169 ~d~~~~VR~~A~~aLg~~~~~~~----~~~~~L~~~L~D~~~~VR~~A~~aLg~~----~~~~a--------v~~Li~~L 232 (280)
T PRK09687 169 KDPNGDVRNWAAFALNSNKYDNP----DIREAFVAMLQDKNEEIRIEAIIGLALR----KDKRV--------LSVLIKEL 232 (280)
T ss_pred cCCCHHHHHHHHHHHhcCCCCCH----HHHHHHHHHhcCCChHHHHHHHHHHHcc----CChhH--------HHHHHHHH
Confidence 89999998888888887743333 3456677788899999999999888764 34433 34455555
Q ss_pred cCChhHHHHHHHHHHHHH
Q 002971 251 SAEPEIQYVALRNINLIV 268 (862)
Q Consensus 251 s~~~~iry~aL~~l~~i~ 268 (862)
..+ .+++-+...+..|.
T Consensus 233 ~~~-~~~~~a~~ALg~ig 249 (280)
T PRK09687 233 KKG-TVGDLIIEAAGELG 249 (280)
T ss_pred cCC-chHHHHHHHHHhcC
Confidence 432 24544444444443
No 23
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.93 E-value=2.8e-08 Score=98.89 Aligned_cols=146 Identities=27% Similarity=0.471 Sum_probs=112.2
Q ss_pred CHHHHhHHHHHhc--CCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhH
Q 002971 59 NPLIRALAVRTMG--CIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMV 136 (862)
Q Consensus 59 n~~ir~lALr~l~--~i~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V 136 (862)
||.+|+.|+.+|| .++-|.+++...+.+.++|.|++|+|||.|++++.++...+.--++. .+...+..+|.|+|+.|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~-~l~~~~l~~l~D~~~~I 79 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKG-QLFSRILKLLVDENPEI 79 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehh-hhhHHHHHHHcCCCHHH
Confidence 6899999999999 67789999999999999999999999999999999999877655553 34466777889999999
Q ss_pred HHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhH---------HHHHHHHHhhcccccHHHHHHHHHHHHHhh
Q 002971 137 VANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWG---------QVFILDALSRYKAADAREAENIVERVTPRL 207 (862)
Q Consensus 137 ~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~---------q~~iL~~L~~~~~~~~~~~~~il~~v~~~l 207 (862)
...|...+.++.....+ ..+...+..++..+..+.+|. ...+++++-.+... ++..+.+++++...+
T Consensus 80 r~~A~~~~~e~~~~~~~---~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~-d~~~~~l~~kl~~~~ 155 (178)
T PF12717_consen 80 RSLARSFFSELLKKRNP---NIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK-DKQKESLVEKLCQRF 155 (178)
T ss_pred HHHHHHHHHHHHHhccc---hHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHH
Confidence 99999999999887322 223455666777777776554 34566666666543 345566666666555
Q ss_pred cC
Q 002971 208 QH 209 (862)
Q Consensus 208 ~~ 209 (862)
.+
T Consensus 156 ~~ 157 (178)
T PF12717_consen 156 LN 157 (178)
T ss_pred HH
Confidence 44
No 24
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.86 E-value=8.9e-06 Score=94.43 Aligned_cols=392 Identities=20% Similarity=0.254 Sum_probs=237.7
Q ss_pred HhHhccCCCcchHHHHHHHHHHhcCCC-C-cHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC-hh-hhH-----HHHHH
Q 002971 14 VVNCMQTENLELKKLVYLYLINYAKSQ-P-DLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-VD-KIT-----EYLCD 84 (862)
Q Consensus 14 vv~l~~s~~~~~Kkl~Yl~l~~~~~~~-~-el~~L~intl~kDl~~~n~~ir~lALr~l~~i~-~~-~~~-----~~l~~ 84 (862)
+..++++.+.+.--++--.+..++... + ++.--....|++-|.|+++.+|.+|++.++++. .. ..+ ..+++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 334666665555444444445544432 2 233445566788999999999999999998863 22 212 46789
Q ss_pred HHHhhhCCCChHHHHHHHHHHHHHHhhcccc--ccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccH--
Q 002971 85 PLQRCLKDDDPYVRKTAAICVAKLYDINAEL--VEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS-- 160 (862)
Q Consensus 85 ~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~--~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~-- 160 (862)
.|..++.|++..|.+.|+-++.++.+..+.. +-+.+....|..++...|..+...++.++.+|+..++. .+....
T Consensus 123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~-~~~~~~~s 201 (503)
T PF10508_consen 123 LIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPE-AAEAVVNS 201 (503)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHH-HHHHHHhc
Confidence 9999999999999999999999998765543 22234578899999887888888899999999877643 223222
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHH-----HHHHHHHHhhcCC------ChHHHHHHHHHHHHhhhcc
Q 002971 161 HTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE-----NIVERVTPRLQHA------NCAVVLSAVKMILQQMELI 229 (862)
Q Consensus 161 ~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~-----~il~~v~~~l~~~------n~aV~~eai~~i~~~~~~~ 229 (862)
+.+..+++.+.+-|.-.|...+++|..++.. +...+ .+++.+...+.+. +...+...++.+.++.. +
T Consensus 202 gll~~ll~eL~~dDiLvqlnalell~~La~~-~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~-~ 279 (503)
T PF10508_consen 202 GLLDLLLKELDSDDILVQLNALELLSELAET-PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLAR-V 279 (503)
T ss_pred cHHHHHHHHhcCccHHHHHHHHHHHHHHHcC-hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHh-c
Confidence 3688888888888889999999999988753 22221 2445555555432 22344555566666532 2
Q ss_pred CChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhChhhhhccceEEEecCCCcHHHHHHHHHHHHHhcCcCc
Q 002971 230 TSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRN 308 (862)
Q Consensus 230 ~~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~N 308 (862)
++..+......+...|..++ +.++..+-+|++++..|+.... ..++| .......
T Consensus 280 -~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~-----------------------G~~~L-~~~~~~~ 334 (503)
T PF10508_consen 280 -SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVE-----------------------GKQLL-LQKQGPA 334 (503)
T ss_pred -ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHH-----------------------HHHHH-HhhcchH
Confidence 33333222223333334444 5788999999999998875321 11223 3345667
Q ss_pred HHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhH-hHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHh-CcccHHHH
Q 002971 309 IDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLER-AAERCISVLLELIKIKVNYVVQEAIIVIKDIFRR-YPNTYESI 386 (862)
Q Consensus 309 v~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~-~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~-~p~~~~~~ 386 (862)
++.++..+..+......+++..++.+++.+-..... ..+......-.....-++.-... .+..++++ .||.|-.+
T Consensus 335 ~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~---~l~~~~~qPF~elr~a~ 411 (503)
T PF10508_consen 335 MKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSN---LLMSLLKQPFPELRCAA 411 (503)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHH---HHHHHhcCCchHHHHHH
Confidence 788888888888888888998888888877432221 22222222222222211111111 34444433 24554433
Q ss_pred HHHHHHhhccCCchHHHHHHHHHHhhcccccCCHHHHHHHHhhhCCCCCHHH---HHHHHHHHHHHh
Q 002971 387 IATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQV---QLQLLTATVKLF 450 (862)
Q Consensus 387 i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~~~~~l~~~~~~~~~e~~~v---~~~iLta~~Kl~ 450 (862)
..-|.. + +.--|.+-+... .+.+++.++++-.+.+.+. |..++.+++|..
T Consensus 412 ~~~l~~-l---------~~~~Wg~~~i~~----~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~ 464 (503)
T PF10508_consen 412 YRLLQA-L---------AAQPWGQREICS----SPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSS 464 (503)
T ss_pred HHHHHH-H---------hcCHHHHHHHHh----CccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 322211 1 111266655443 4567888887766555443 445555555443
No 25
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=3.5e-05 Score=92.16 Aligned_cols=519 Identities=15% Similarity=0.187 Sum_probs=305.0
Q ss_pred cchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc-CCCCHHHHhHHHHHhcCCC-------hhhhHH
Q 002971 9 SLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDS-QDPNPLIRALAVRTMGCIR-------VDKITE 80 (862)
Q Consensus 9 ~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl-~~~n~~ir~lALr~l~~i~-------~~~~~~ 80 (862)
..|-+.+.-+.|.|-+.+|=+==.+...+...+ + .+.|..=+ .+.||.+|.+|.=.+-++. ..+.-+
T Consensus 4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~-~----l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~ 78 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNEVRRQAEEALETLAKTEP-L----LPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQ 78 (1075)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHhhcccc-h----HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHH
Confidence 446667776777777778887777787777666 2 22222222 3578999999975444332 234445
Q ss_pred HHHHHHHhhhCC-CChHHHHHHHHHHHHHHhhc-cccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccc
Q 002971 81 YLCDPLQRCLKD-DDPYVRKTAAICVAKLYDIN-AELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI 158 (862)
Q Consensus 81 ~l~~~v~~~l~d-~~~yVRk~A~~~l~kl~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l 158 (862)
.+-..+..++.+ +.+.||||-+-.+.-+.+.. |+.-+ ++++.|....++.|+...-.|+..|..+...-+...-..
T Consensus 79 siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WP--ell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~ 156 (1075)
T KOG2171|consen 79 SIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWP--ELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPH 156 (1075)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchH--HHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchh
Confidence 555555566655 89999999999999999853 44111 234555677789999999999999888755432221112
Q ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHhhccccc---HHHHH-------HHHHHHHHhhcCCChHHHHHHHHHHHHhhhc
Q 002971 159 TSHTLSKLLTALNECTEWGQVFILDALSRYKAAD---AREAE-------NIVERVTPRLQHANCAVVLSAVKMILQQMEL 228 (862)
Q Consensus 159 ~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~---~~~~~-------~il~~v~~~l~~~n~aV~~eai~~i~~~~~~ 228 (862)
+....+-+.+++.+.+-=..+.-++.+..|.... ..+.. .+++.+.+.++..+....-++..++..++.
T Consensus 157 ~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e- 235 (1075)
T KOG2171|consen 157 LDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLE- 235 (1075)
T ss_pred HHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHh-
Confidence 2222233334455543327777777777665433 33322 223334445556666555666666666543
Q ss_pred cCChHHHHHHHHhcccchhhcc-cC--ChhHHHHHHHHHHHHHhhChhhhhcc-----------ceEE------------
Q 002971 229 ITSTDVVRNLCKKMAPPLVTLL-SA--EPEIQYVALRNINLIVQRRPTILAHE-----------IKVF------------ 282 (862)
Q Consensus 229 ~~~~~~~~~~~~~~~~~L~~ll-s~--~~~iry~aL~~l~~i~~~~p~~~~~~-----------~~~~------------ 282 (862)
..+..++.....++.....+. ++ ++.+|..||..|..++...|...+.+ +...
T Consensus 236 -~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~ 314 (1075)
T KOG2171|consen 236 -SEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNE 314 (1075)
T ss_pred -hchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccc
Confidence 355565544434433222222 33 56799999999988876544322111 0000
Q ss_pred Eec----CCCcHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhh----HhHHHHHHHH
Q 002971 283 FCK----YNDPIYVKMEKLEIMIK-LASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLE----RAAERCISVL 353 (862)
Q Consensus 283 ~~l----~~d~~~Ik~~~L~lL~~-l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~----~~~~~~v~~l 353 (862)
.-. ++++..+-.++||.|.. |.-+.=+..+++.+..++++.+...|..++.+|+.+++-.+ +..+.+++..
T Consensus 315 d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~V 394 (1075)
T KOG2171|consen 315 DDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIV 394 (1075)
T ss_pred cccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 011 12245566777776643 33344456677777788899999999999999999887544 3455667777
Q ss_pred HHHHhhhcchhHHHHHHHHHHHHHhC-cccHH----HHHHHHHHhhccCCchHHHHHHHHHHhhcccccCC------HHH
Q 002971 354 LELIKIKVNYVVQEAIIVIKDIFRRY-PNTYE----SIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN------ADE 422 (862)
Q Consensus 354 l~ll~~~~~~v~~e~i~~l~~i~~~~-p~~~~----~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~------~~~ 422 (862)
+..|.+....|...+...+-++-... |+.++ .+...|...+++...+.+.+.++-.+=+|.+.++. -+.
T Consensus 395 l~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~ 474 (1075)
T KOG2171|consen 395 LNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDG 474 (1075)
T ss_pred HhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 77777777788888888888876553 44433 34445555666666777654333233223332221 123
Q ss_pred HHH-HHhhhCCCCCHHHHHHHHHHHHHHhhcCCCC------ChHHHHHHHHHhcccCCCChHHHHHHHHHHHHhcC--C-
Q 002971 423 LLE-SFLESFPEEPAQVQLQLLTATVKLFLKKPTE------GPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLST--D- 492 (862)
Q Consensus 423 ~l~-~~~~~~~~e~~~v~~~iLta~~Kl~~~~~~~------~~~~~i~~~l~~~~~~s~~~dvrdRA~~y~~ll~~--~- 492 (862)
+++ .|.--....++.||.+.+||++-.+....+. ..-+.+.++|+.+. +.+..++|-...+...++.. +
T Consensus 475 lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~-~~d~r~LrgktmEcisli~~AVGk 553 (1075)
T KOG2171|consen 475 LMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNAD-DKDLRELRGKTMECLSLIARAVGK 553 (1075)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCC-chhhHHHHhhHHHHHHHHHHHhhh
Confidence 444 2222234578999999999999887754332 12234555565542 33456677777677766653 1
Q ss_pred ------HHHHHHhhccCCCCCCCCCccCChhHHHHHHHhcCcccccccCCcchhc
Q 002971 493 ------PEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFV 541 (862)
Q Consensus 493 ------~~~~~~~v~~~~p~~~~~~~~~~~~ll~~l~~~~~~~~~vy~~~~~~~~ 541 (862)
.+..-++...-. .+.-..+..+...++.-.+.++.+|++.-..|.
T Consensus 554 e~F~~~a~eliqll~~~~----~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L 604 (1075)
T KOG2171|consen 554 EKFLPLAEELIQLLLELQ----GSDQDDDDPLRSYMIAFWARMCRILGDDFAPFL 604 (1075)
T ss_pred hhhhHhHHHHHHHHHhhc----ccchhhccccHHHHHHHHHHHHHHhchhhHhHH
Confidence 122223222222 111122345667777778888889887765554
No 26
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=3.1e-06 Score=94.53 Aligned_cols=301 Identities=18% Similarity=0.183 Sum_probs=191.9
Q ss_pred chHHHhHhccCCCcchHHHHHHHHHHhcC--CCCcHHHH----HHHHHHhhcC-CCCHHHHhHHHHHhcCCCh--hhhHH
Q 002971 10 LFTDVVNCMQTENLELKKLVYLYLINYAK--SQPDLAIL----AVNTFVKDSQ-DPNPLIRALAVRTMGCIRV--DKITE 80 (862)
Q Consensus 10 lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~--~~~el~~L----~intl~kDl~-~~n~~ir~lALr~l~~i~~--~~~~~ 80 (862)
.+..++..+-|.+...+.-+--.+..+.. .+|.+... ++..|.+-|. +.+|.++-.|-.+|.+|.. .+-.+
T Consensus 67 ~~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~ 146 (514)
T KOG0166|consen 67 NLELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTK 146 (514)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcc
Confidence 35666777778887775444444444432 23443333 2344555564 5568888777777777753 33222
Q ss_pred -----HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccc---cccccchHHHHHHhhcCCCh-hHHHHHHHHHHHHhhcC
Q 002971 81 -----YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNP-MVVANAVAALAEIEENS 151 (862)
Q Consensus 81 -----~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~---~~~~~~~~~~l~~lL~d~d~-~V~~~a~~~l~~i~~~~ 151 (862)
..+|...+++.++++.||.-|+.|+..+....|+ .+.+.+.++.|..++...++ ..+.++.-+|..+|.+.
T Consensus 147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk 226 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK 226 (514)
T ss_pred ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC
Confidence 2356679999999999999999999999887764 44455777888888876665 66778888888888775
Q ss_pred -CCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHH-----HHHHHHhhcCCChHHHHHHHHHHHHh
Q 002971 152 -SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENI-----VERVTPRLQHANCAVVLSAVKMILQQ 225 (862)
Q Consensus 152 -~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~i-----l~~v~~~l~~~n~aV~~eai~~i~~~ 225 (862)
|.+-++...+.+.-|...+...++-...-....++.+.....+....+ +.++..+|.|....|+-.|++++.++
T Consensus 227 ~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNI 306 (514)
T KOG0166|consen 227 NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNI 306 (514)
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccce
Confidence 666677777777777777777777777666666665543333333333 44677788888888888888888764
Q ss_pred hhccCChHHHHHHHH--hcccchhhccc-CCh-hHHHHHHHHHHHHHhhChhhhhccceEEEecCCCcHHHHHHHHHHHH
Q 002971 226 MELITSTDVVRNLCK--KMAPPLVTLLS-AEP-EIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMI 301 (862)
Q Consensus 226 ~~~~~~~~~~~~~~~--~~~~~L~~lls-~~~-~iry~aL~~l~~i~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~ 301 (862)
. ...+...+... .+.+.|..|++ ++. .+|--|..+|..|..-.++-++.
T Consensus 307 v---tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqa------------------------ 359 (514)
T KOG0166|consen 307 V---TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQA------------------------ 359 (514)
T ss_pred e---eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHH------------------------
Confidence 2 22222222221 23333444554 222 36666777777666544432110
Q ss_pred HhcCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhh
Q 002971 302 KLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKL 342 (862)
Q Consensus 302 ~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~ 342 (862)
+.+. .++..|..-+...|.+.++++.++|+.++..-
T Consensus 360 -Vida----~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g 395 (514)
T KOG0166|consen 360 -VIDA----NLIPVLINLLQTAEFDIRKEAAWAISNLTSSG 395 (514)
T ss_pred -HHHc----ccHHHHHHHHhccchHHHHHHHHHHHhhcccC
Confidence 1111 25666777777888999999999999887654
No 27
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=3.6e-05 Score=91.97 Aligned_cols=425 Identities=16% Similarity=0.216 Sum_probs=269.0
Q ss_pred HHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCC-CChHHHHHHHHHHHHHHhh-ccccccc--cchHH-HH
Q 002971 51 FVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDI-NAELVED--RGFLE-SL 125 (862)
Q Consensus 51 l~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~d-~~~yVRk~A~~~l~kl~~~-~p~~~~~--~~~~~-~l 125 (862)
|..-|.+++-.+|.-|=+++.++...+= +.+.+...+.. .+|-||.-|+.=+.|+..+ ++.+-.+ ..+.. .|
T Consensus 9 Ll~~l~spDn~vr~~Ae~~l~~~~~~~~---~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL 85 (1075)
T KOG2171|consen 9 LLQQLLSPDNEVRRQAEEALETLAKTEP---LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLL 85 (1075)
T ss_pred HHHHhcCCCchHHHHHHHHHHHhhcccc---hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 4455667777789999999987653222 55556666654 8999999999999987754 3332221 12222 23
Q ss_pred HHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcc---cc-cHHHHHHHHH
Q 002971 126 KDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYK---AA-DAREAENIVE 201 (862)
Q Consensus 126 ~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~---~~-~~~~~~~il~ 201 (862)
...+.++.+.|.-...-++.+|+++.-+..| +..+.-|.++....++=.+-..+.+|..+. .. .......+..
T Consensus 86 ~~~~~E~~~~vr~k~~dviAeia~~~l~e~W---Pell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~ 162 (1075)
T KOG2171|consen 86 EIIQSETEPSVRHKLADVIAEIARNDLPEKW---PELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLR 162 (1075)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhccccch---HHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHH
Confidence 3445688899988888888899887644323 455677777777778877766666665442 11 1122335555
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhhhccC-ChHHHHHHHHhcccchhh----cc-cCChhHHHHHHHHHHHHHhhChhhh
Q 002971 202 RVTPRLQHANCAVVLSAVKMILQQMELIT-STDVVRNLCKKMAPPLVT----LL-SAEPEIQYVALRNINLIVQRRPTIL 275 (862)
Q Consensus 202 ~v~~~l~~~n~aV~~eai~~i~~~~~~~~-~~~~~~~~~~~~~~~L~~----ll-s~~~~iry~aL~~l~~i~~~~p~~~ 275 (862)
.+...+...+..|...|++++..+..+.+ +++..+. ...+.|.++. .+ ..+...--.+|..+..++...|.++
T Consensus 163 lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~-~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l 241 (1075)
T KOG2171|consen 163 LFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDK-FRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLL 241 (1075)
T ss_pred HHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHH-HHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHH
Confidence 56677777666699999999998876653 3333332 2234454443 33 2344456778999999999999999
Q ss_pred hccce-EE-Ee-----cCCCcHHHHHHHHHHHHHhcCc------Cc---HHHHHHHHHHhhhhccH-------------H
Q 002971 276 AHEIK-VF-FC-----KYNDPIYVKMEKLEIMIKLASD------RN---IDQVLLEFKEYATEVDV-------------D 326 (862)
Q Consensus 276 ~~~~~-~~-~~-----l~~d~~~Ik~~~L~lL~~l~~~------~N---v~~Iv~eL~~y~~~~d~-------------~ 326 (862)
.+|+. ++ +| -.+=+.++|..||++|..++.- .+ ...++.-++.-+++.+. +
T Consensus 242 ~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~ 321 (1075)
T KOG2171|consen 242 RPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDD 321 (1075)
T ss_pred HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccccccc
Confidence 98865 22 22 2234488999999999887543 11 22233334443332211 1
Q ss_pred ---HHHHHHHHHHHHHHhhhH--hHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCcccHHH----HHHHHHHhhccC
Q 002971 327 ---FVRKAVRAIGRCAIKLER--AAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYES----IIATLCESLDTL 397 (862)
Q Consensus 327 ---~~~~~i~~I~~la~k~~~--~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~----~i~~L~~~l~~~ 397 (862)
-.+-+.++|-++|.+.++ ...-.+..+-.++....-+-...+...+..+....++.-.. ++..++..+.|
T Consensus 322 ~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~D- 400 (1075)
T KOG2171|consen 322 EETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLND- 400 (1075)
T ss_pred ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCC-
Confidence 345567788888887764 33445566667777776666777777777777666654333 33444445554
Q ss_pred CchHHHHHHHHHHhhcccccCC------HHHHHHHHhhhC-CCCCHHHHHHHHHHHHHHhhcCCCCChHH----HHHHHH
Q 002971 398 DEPEAKASMIWIIGEYAERIDN------ADELLESFLESF-PEEPAQVQLQLLTATVKLFLKKPTEGPQQ----MIQVVL 466 (862)
Q Consensus 398 ~~~~~~~~~~wilGEy~~~i~~------~~~~l~~~~~~~-~~e~~~v~~~iLta~~Kl~~~~~~~~~~~----~i~~~l 466 (862)
.+|.++-+++..+|+++..+.. ...++..++... ..+++.|+...-.|+.-++..++.+-..+ ++.+.|
T Consensus 401 phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l 480 (1075)
T KOG2171|consen 401 PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKL 480 (1075)
T ss_pred CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 3688999999999999876531 112222233222 24578999999999999998887542333 333344
Q ss_pred HhcccCCCChHHHHHHHH
Q 002971 467 NNATVETDNPDLRDRAYI 484 (862)
Q Consensus 467 ~~~~~~s~~~dvrdRA~~ 484 (862)
... .++..+.||.-|.-
T Consensus 481 ~~L-~~~~~~~v~e~vvt 497 (1075)
T KOG2171|consen 481 LLL-LQSSKPYVQEQAVT 497 (1075)
T ss_pred HHH-hcCCchhHHHHHHH
Confidence 443 35678888887754
No 28
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=8.2e-07 Score=99.05 Aligned_cols=404 Identities=18% Similarity=0.238 Sum_probs=233.8
Q ss_pred hHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhh-----ccccccccchHHHHHHhhcCCChhHHH
Q 002971 64 ALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI-----NAELVEDRGFLESLKDLISDNNPMVVA 138 (862)
Q Consensus 64 ~lALr~l~~i~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~-----~p~~~~~~~~~~~l~~lL~d~d~~V~~ 138 (862)
+.||-.|+++-..++.+.+.|.+++.|.+..+.||-.+++|+.-+..- +|.+- .+++.+..+|+|+-|.|..
T Consensus 376 AAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lp---eLip~l~~~L~DKkplVRs 452 (885)
T KOG2023|consen 376 AAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLP---ELIPFLLSLLDDKKPLVRS 452 (885)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchH---HHHHHHHHHhccCccceee
Confidence 678999999999999999999999999999999999999999998764 33322 3789999999999999987
Q ss_pred HHHHHHHHHhhcC-CCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHH----HHHHHHHH---HhhcCC
Q 002971 139 NAVAALAEIEENS-SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREA----ENIVERVT---PRLQHA 210 (862)
Q Consensus 139 ~a~~~l~~i~~~~-~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~----~~il~~v~---~~l~~~ 210 (862)
-++=.|..-.+.- ....-+...+.+..|++.+-|.+-|.|-.....++.+.....++. +.|+..+. ..-++.
T Consensus 453 ITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~K 532 (885)
T KOG2023|consen 453 ITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKK 532 (885)
T ss_pred eeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhc
Confidence 6555554433210 111123455677788888889999999887777776643222222 22332222 234788
Q ss_pred ChHHHHHHHHHHHHhh-hccCChHHHHHHHHhcccchhh---cccC-ChhHHHHHHHHHHHHHhhChhhhhccceEEEec
Q 002971 211 NCAVVLSAVKMILQQM-ELITSTDVVRNLCKKMAPPLVT---LLSA-EPEIQYVALRNINLIVQRRPTILAHEIKVFFCK 285 (862)
Q Consensus 211 n~aV~~eai~~i~~~~-~~~~~~~~~~~~~~~~~~~L~~---lls~-~~~iry~aL~~l~~i~~~~p~~~~~~~~~~~~l 285 (862)
|--|+|.|+.++-.-. ..++.+..+ +.+.+||+. +++. +++ -|--|.++..++..-..-|.++.
T Consensus 533 NLlILYDAIgtlAdsvg~~Ln~~~Yi----qiLmPPLi~KW~~lsd~DKd-LfPLLEClSsia~AL~~gF~P~~------ 601 (885)
T KOG2023|consen 533 NLLILYDAIGTLADSVGHALNKPAYI----QILMPPLIEKWELLSDSDKD-LFPLLECLSSIASALGVGFLPYA------ 601 (885)
T ss_pred ceehHHHHHHHHHHHHHHhcCcHHHH----HHhccHHHHHHHhcCcccch-HHHHHHHHHHHHHHHhccccccC------
Confidence 9999999998875421 112344434 347788873 5654 444 46678888888765433343322
Q ss_pred CCCcHHHHHHHHHHHHH----hcCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhHh------HHHHHHHHHH
Q 002971 286 YNDPIYVKMEKLEIMIK----LASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERA------AERCISVLLE 355 (862)
Q Consensus 286 ~~d~~~Ik~~~L~lL~~----l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~------~~~~v~~ll~ 355 (862)
.+ +=.+..+++.+ ++...+-.. ....|.+|..-+..-+.-+|+-.... ..-.++.|++
T Consensus 602 --~~--Vy~Rc~~il~~t~q~~~~~~~~~~--------~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~ 669 (885)
T KOG2023|consen 602 --QP--VYQRCFRILQKTLQLLAKVQQDPT--------VEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQ 669 (885)
T ss_pred --HH--HHHHHHHHHHHHHHHHHhccCCcc--------ccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHH
Confidence 22 22334444432 111111000 01123333333333333333322211 1236788888
Q ss_pred HHhhhcchhHHHHHHHHHHHHHhCcccHHHHHHHHHHhhccCCchH---HHHHHHHHHhhcccccCC-----HHHHHHHH
Q 002971 356 LIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPE---AKASMIWIIGEYAERIDN-----ADELLESF 427 (862)
Q Consensus 356 ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~---~~~~~~wilGEy~~~i~~-----~~~~l~~~ 427 (862)
.+......|++.+.-.+.++..-.++.-...+......+..-..|+ +-..++|-+||-+-.+.. ...++..+
T Consensus 670 C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L 749 (885)
T KOG2023|consen 670 CLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDL 749 (885)
T ss_pred HhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHH
Confidence 8888888899988888888876654322112222222222111233 345678999998876542 12233333
Q ss_pred hhhCCC--CCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHh-cc--cCCCChHHHHHHHHH-HHHhcCCHH
Q 002971 428 LESFPE--EPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNN-AT--VETDNPDLRDRAYIY-WRLLSTDPE 494 (862)
Q Consensus 428 ~~~~~~--e~~~v~~~iLta~~Kl~~~~~~~~~~~~i~~~l~~-~~--~~s~~~dvrdRA~~y-~~ll~~~~~ 494 (862)
..-... .+..+-.-.--++.|+..-+|++ ..+.+..+.+. |+ ..-.|-|-.+-|+.- -.++..+|.
T Consensus 750 ~~iin~~~~~~tllENtAITIGrLg~~~Pe~-vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~ 821 (885)
T KOG2023|consen 750 ITIINRQNTPKTLLENTAITIGRLGYICPEE-VAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPS 821 (885)
T ss_pred HHHhcccCchHHHHHhhhhhhhhhhccCHHh-cchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCch
Confidence 322221 12222223334678888888876 55666555442 21 122344556666543 355555554
No 29
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=1.5e-05 Score=90.34 Aligned_cols=314 Identities=19% Similarity=0.238 Sum_probs=174.9
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccH
Q 002971 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (862)
Q Consensus 81 ~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~ 160 (862)
-+...+++-|.|+|.|||-...--+.|+ +.||+++. +.|.++.+|..+++-|..||+.++++|-+.. ...+.=.+
T Consensus 99 Lvcna~RkDLQHPNEyiRG~TLRFLckL--kE~ELlep--l~p~IracleHrhsYVRrNAilaifsIyk~~-~~L~pDap 173 (948)
T KOG1058|consen 99 LVCNAYRKDLQHPNEYIRGSTLRFLCKL--KEPELLEP--LMPSIRACLEHRHSYVRRNAILAIFSIYKNF-EHLIPDAP 173 (948)
T ss_pred HHHHHHhhhccCchHhhcchhhhhhhhc--CcHHHhhh--hHHHHHHHHhCcchhhhhhhheeehhHHhhh-hhhcCChH
Confidence 3468899999999999999988888877 68999986 9999999999999999999999999997762 11122223
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhh------------------cCCChHHHHHHHHHH
Q 002971 161 HTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRL------------------QHANCAVVLSAVKMI 222 (862)
Q Consensus 161 ~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l------------------~~~n~aV~~eai~~i 222 (862)
..+...+.. +.+|-..-..+=.|.. -|++.+-+.+....... .+.|++-.-.-++++
T Consensus 174 eLi~~fL~~--e~DpsCkRNAFi~L~~---~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i 248 (948)
T KOG1058|consen 174 ELIESFLLT--EQDPSCKRNAFLMLFT---TDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCI 248 (948)
T ss_pred HHHHHHHHh--ccCchhHHHHHHHHHh---cCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHH
Confidence 333333322 3333333222212211 22333333222222222 234444433334444
Q ss_pred HHhhhccCChHHHHHHHHhcccchhhcccCChhHHHHHHHHHHHHHhhChhhhhccceEEEecCCCcHHHHHHHHHHHHH
Q 002971 223 LQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIK 302 (862)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~L~~lls~~~~iry~aL~~l~~i~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~ 302 (862)
+.++.. +++..+ ..++..|+++ |++|+.--.|-+++..++-+ ..|-.+|.--||.|+.
T Consensus 249 ~~lL~s-tssaV~----fEaa~tlv~l-S~~p~alk~Aa~~~i~l~~k----------------esdnnvklIvldrl~~ 306 (948)
T KOG1058|consen 249 YNLLSS-TSSAVI----FEAAGTLVTL-SNDPTALKAAASTYIDLLVK----------------ESDNNVKLIVLDRLSE 306 (948)
T ss_pred HHHHhc-CCchhh----hhhcceEEEc-cCCHHHHHHHHHHHHHHHHh----------------ccCcchhhhhHHHHHH
Confidence 444321 111111 0122223332 23333222222333332222 3345578888888888
Q ss_pred hcCcCcHHHHHHHH----HHhhhhccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhh-c------chhHHHHHHH
Q 002971 303 LASDRNIDQVLLEF----KEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK-V------NYVVQEAIIV 371 (862)
Q Consensus 303 l~~~~Nv~~Iv~eL----~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~-~------~~v~~e~i~~ 371 (862)
+. .+-+.|+++| +..+...|.+++++.+.-.-.++.. ...+..++.|-+=+... + ....+..+..
T Consensus 307 l~--~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvss--rNvediv~~Lkke~~kT~~~e~d~~~~yRqlLikt 382 (948)
T KOG1058|consen 307 LK--ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS--RNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKT 382 (948)
T ss_pred Hh--hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhh--ccHHHHHHHHHHHHHhccccccccchHHHHHHHHH
Confidence 86 3445555555 3456678899999987655444432 34445555554433221 1 1234555566
Q ss_pred HHHHHHhCcccHHHHHHHHHHhhccCCchHHHHHHHHHHhhcccccCC-HHHHHHHHhhhC
Q 002971 372 IKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN-ADELLESFLESF 431 (862)
Q Consensus 372 l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~-~~~~l~~~~~~~ 431 (862)
+...-.++|+....++..|++++.+.. +.+-..++-.+.|--+..++ -..+++.+++.|
T Consensus 383 ih~cav~Fp~~aatvV~~ll~fisD~N-~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~ 442 (948)
T KOG1058|consen 383 IHACAVKFPEVAATVVSLLLDFISDSN-EAAASDVLMFVREAIEKFPNLRASIIEKLLETF 442 (948)
T ss_pred HHHHhhcChHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhh
Confidence 666667899999999999999887653 33334444555555444443 234455555444
No 30
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=98.58 E-value=2.2e-07 Score=83.85 Aligned_cols=88 Identities=20% Similarity=0.234 Sum_probs=67.6
Q ss_pred CCceEEEEEEEeeCCeeEEEEEEEecCCCCcccceeeecccccCcccCCCCCCCcCCCCCeeeEEEeeeecCCCCCCCCC
Q 002971 644 GQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAGPPS 723 (862)
Q Consensus 644 ~~gL~I~~~~~~~~~~~~l~l~~~N~s~~~it~f~~q~~~n~~gl~~~~~~~~~~l~pg~~~~~~i~i~~~~~~~~~~~~ 723 (862)
+++|+|.++++|+++.+++.++|+|+++++|++|.++++.+.+.......+..+.|+||+++++.+.+.+..++... +.
T Consensus 4 ~~~l~I~~~~~~~~~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~~~s~~~l~p~~~i~q~~~i~~~~~~~~~-~~ 82 (104)
T smart00809 4 KNGLQIGFKFERRPGLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQPPSSPTLPPGGQITQVLKVENPGKFPLR-LR 82 (104)
T ss_pred CCCEEEEEEEEcCCCeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEcCCCCCccCCCCCEEEEEEEECCCCCCEE-EE
Confidence 57899999999999999999999999999999999999987653222222334589999999999999988876433 23
Q ss_pred cceEEEEec
Q 002971 724 SLLQVAVKN 732 (862)
Q Consensus 724 ~~l~~~~k~ 732 (862)
..+.+.+++
T Consensus 83 ~~vsy~~~g 91 (104)
T smart00809 83 LRLSYLLGG 91 (104)
T ss_pred EEEEEEECC
Confidence 334444443
No 31
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=2e-05 Score=88.29 Aligned_cols=378 Identities=18% Similarity=0.204 Sum_probs=217.3
Q ss_pred CcHHHHHHHHHHhhcCCCCHHHHhHH---HHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccccc
Q 002971 41 PDLAILAVNTFVKDSQDPNPLIRALA---VRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE 117 (862)
Q Consensus 41 ~el~~L~intl~kDl~~~n~~ir~lA---Lr~l~~i~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~ 117 (862)
++..--+-.+..+-+-++++.||+-. ++|+.+...-..-+.+.|.+..+|.+++-..---|.-|+.|++.-+++.+.
T Consensus 85 ~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~ld 164 (885)
T KOG2023|consen 85 SEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLD 164 (885)
T ss_pred hHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHh
Confidence 44555566667778888889888654 555555556666789999999999999988899999999999988777654
Q ss_pred c-------cchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhccc
Q 002971 118 D-------RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKA 190 (862)
Q Consensus 118 ~-------~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~ 190 (862)
. .-+++++....+..+|...+.|+..+..+..........-+-+.+..+...-+|.+|-.+..+.+.|..+..
T Consensus 165 s~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Lle 244 (885)
T KOG2023|consen 165 SDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLE 244 (885)
T ss_pred hhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 2 235677788888999999999999998865544333221111222333333357778777666665554321
Q ss_pred ccH----HHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHH
Q 002971 191 ADA----REAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNIN 265 (862)
Q Consensus 191 ~~~----~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~ 265 (862)
--+ .....+++..+.+.+..|..|.+||+..-+.+.+.--.++.+.....+++|.|+.=+ .++..+-.+. +-.
T Consensus 245 vr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~--~~e 322 (885)
T KOG2023|consen 245 VRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLK--NNE 322 (885)
T ss_pred hcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhc--Ccc
Confidence 111 123456777777788888899999999988775421124455555566777665433 2332221110 000
Q ss_pred H--HHh-----hChhhhhc--cc--------eEEEecCCCc-----HHHHH---HHHHHHHHhcCcCcHHHHHHHHHHhh
Q 002971 266 L--IVQ-----RRPTILAH--EI--------KVFFCKYNDP-----IYVKM---EKLEIMIKLASDRNIDQVLLEFKEYA 320 (862)
Q Consensus 266 ~--i~~-----~~p~~~~~--~~--------~~~~~l~~d~-----~~Ik~---~~L~lL~~l~~~~Nv~~Iv~eL~~y~ 320 (862)
. .+. ..|.+.+. |- ..+.--.+|| ..+|+ .+||+|..+-.++=...++.-|++.+
T Consensus 323 eD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L 402 (885)
T KOG2023|consen 323 EDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHL 402 (885)
T ss_pred ccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHc
Confidence 0 000 00111000 00 0000000111 12332 35555555554444444455555544
Q ss_pred hhccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCcccHHHHHHHHHHhhccCCch
Q 002971 321 TEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEP 400 (862)
Q Consensus 321 ~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~ 400 (862)
...+--.|+..|.++|.+|+ -|++.+..-| | .++..|...+++ +.|
T Consensus 403 ~~~~W~vrEagvLAlGAIAE-------GcM~g~~p~L----------------------p----eLip~l~~~L~D-Kkp 448 (885)
T KOG2023|consen 403 SSEEWKVREAGVLALGAIAE-------GCMQGFVPHL----------------------P----ELIPFLLSLLDD-KKP 448 (885)
T ss_pred CcchhhhhhhhHHHHHHHHH-------HHhhhcccch----------------------H----HHHHHHHHHhcc-Ccc
Confidence 44334444555556655554 2333222111 1 234445555544 346
Q ss_pred HHHHHHHHHHhhcccccCC--H----HHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCC
Q 002971 401 EAKASMIWIIGEYAERIDN--A----DELLESFLESFPEEPAQVQLQLLTATVKLFLKKP 454 (862)
Q Consensus 401 ~~~~~~~wilGEy~~~i~~--~----~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~~ 454 (862)
-++...+|-++.|+..+.. . ..++..++++..+....||-+.-+|++-+--...
T Consensus 449 lVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~ 508 (885)
T KOG2023|consen 449 LVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAG 508 (885)
T ss_pred ceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcc
Confidence 6677778999999887642 2 2355666677777888888888888777755443
No 32
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=0.0002 Score=79.30 Aligned_cols=361 Identities=18% Similarity=0.193 Sum_probs=240.1
Q ss_pred HHhHhccCCCcchHHHHHHHHHHhcC-----CCCcHHHHHHHHHHhhcC-CCCH-----HHHhHHHHHhcC-CChhhhHH
Q 002971 13 DVVNCMQTENLELKKLVYLYLINYAK-----SQPDLAILAVNTFVKDSQ-DPNP-----LIRALAVRTMGC-IRVDKITE 80 (862)
Q Consensus 13 ~vv~l~~s~~~~~Kkl~Yl~l~~~~~-----~~~el~~L~intl~kDl~-~~n~-----~ir~lALr~l~~-i~~~~~~~ 80 (862)
.+++.+..+-|+-||.+-+-+..+.+ .+.+-..-+|..+-+|.. +++. -.-|+|.-++|- .......+
T Consensus 4 ~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~ 83 (675)
T KOG0212|consen 4 SIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLE 83 (675)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHH
Confidence 35667777778888888887776543 345556667777778874 3333 344566555542 22333677
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccc--cchHHHHHHhhcCCChhHHHHHHH---HHHHHhhcCCCCc
Q 002971 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVA---ALAEIEENSSRPI 155 (862)
Q Consensus 81 ~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~a~~---~l~~i~~~~~~~~ 155 (862)
.+.++|..|+.|++.-||=-|+.+++.+.+.....+.. +.+.+.+.++..|+|..|...|=. ++.+|...+. ..
T Consensus 84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~-~t 162 (675)
T KOG0212|consen 84 KIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESA-ST 162 (675)
T ss_pred HhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccc-cc
Confidence 88999999999999999999999999888876544321 235567777888999999876632 2333333222 12
Q ss_pred ccccHHHHHHHHH-HhccCChhHHHHHHHHHhhcccccHHHH----HHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccC
Q 002971 156 FEITSHTLSKLLT-ALNECTEWGQVFILDALSRYKAADAREA----ENIVERVTPRLQHANCAVVLSAVKMILQQMELIT 230 (862)
Q Consensus 156 ~~l~~~~~~~Ll~-~l~~~~~w~q~~iL~~L~~~~~~~~~~~----~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~ 230 (862)
|.+ +.+..|++ .+...+|.....+++-|..+....+-+. ..+++-+...|...+..|.--|=.++..++..+.
T Consensus 163 FsL--~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~ 240 (675)
T KOG0212|consen 163 FSL--PEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR 240 (675)
T ss_pred cCH--HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh
Confidence 332 22333333 3445688888888877765433322222 2455666778888888887655555555443332
Q ss_pred -ChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhChhhhhccc-----eEEEecCCCcH-HHHHHHHH---H
Q 002971 231 -STDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEI-----KVFFCKYNDPI-YVKMEKLE---I 299 (862)
Q Consensus 231 -~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~~~~~~~-----~~~~~l~~d~~-~Ik~~~L~---l 299 (862)
+|+... ..++++.++.-+ ++++++|-.||..|..+++..|..+-.++ .++-|..+++. +||-.|-. .
T Consensus 241 s~P~s~d--~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~ 318 (675)
T KOG0212|consen 241 SSPSSMD--YDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGL 318 (675)
T ss_pred cCccccC--cccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHH
Confidence 333321 123556666555 78999999999999999999886554332 25668877765 56655543 4
Q ss_pred HHHhcCcCcHH------HHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhH----hHHHHHHHHHHHHhhhcchhHHHHH
Q 002971 300 MIKLASDRNID------QVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLER----AAERCISVLLELIKIKVNYVVQEAI 369 (862)
Q Consensus 300 L~~l~~~~Nv~------~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~----~~~~~v~~ll~ll~~~~~~v~~e~i 369 (862)
|.+++.+.--+ .|++-|..|+.+...+-|..+..-|..+-.|.+. ..+....+|++-|++..+.|+-.+.
T Consensus 319 l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L 398 (675)
T KOG0212|consen 319 LLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLAL 398 (675)
T ss_pred HHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHH
Confidence 66666654433 8999999999998889998888888777777653 4557788899999998888888777
Q ss_pred HHHHHHHHh
Q 002971 370 IVIKDIFRR 378 (862)
Q Consensus 370 ~~l~~i~~~ 378 (862)
..+..|...
T Consensus 399 ~lla~i~~s 407 (675)
T KOG0212|consen 399 SLLASICSS 407 (675)
T ss_pred HHHHHHhcC
Confidence 777777643
No 33
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=0.00024 Score=81.39 Aligned_cols=411 Identities=15% Similarity=0.180 Sum_probs=257.4
Q ss_pred hcCCCCHHHHhHHHHHhcC-CChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCC
Q 002971 54 DSQDPNPLIRALAVRTMGC-IRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDN 132 (862)
Q Consensus 54 Dl~~~n~~ir~lALr~l~~-i~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~ 132 (862)
=|++.+.-.+.-|++.+-. |..-+=+..+.|+|.|.+.+.++-|||-..+-+++.....|++.-- =++.+++.|.|.
T Consensus 43 lLdSnkd~~KleAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--SIntfQk~L~Dp 120 (968)
T KOG1060|consen 43 LLDSNKDSLKLEAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--SINTFQKALKDP 120 (968)
T ss_pred HHhccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee--eHHHHHhhhcCC
Confidence 3456666667777766544 3333347788999999999999999999999999999999997642 368899999999
Q ss_pred ChhHHHHHHHHHHHHhhcCCCCcccccHHHH-HHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCC
Q 002971 133 NPMVVANAVAALAEIEENSSRPIFEITSHTL-SKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHAN 211 (862)
Q Consensus 133 d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~-~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n 211 (862)
|+.+.+.|+.+|..|.-. .+.+++ -.+-++..|++|+..-..-..+.++-.-++++..++++.+..+|....
T Consensus 121 N~LiRasALRvlSsIRvp-------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~s 193 (968)
T KOG1060|consen 121 NQLIRASALRVLSSIRVP-------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRS 193 (968)
T ss_pred cHHHHHHHHHHHHhcchh-------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCC
Confidence 999999999999988432 222222 222244567888876555445554444556666688888888899888
Q ss_pred hHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhccc-CChhHHHHHHHHHHHHHhhC---hhhh------------
Q 002971 212 CAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRR---PTIL------------ 275 (862)
Q Consensus 212 ~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~lls-~~~~iry~aL~~l~~i~~~~---p~~~------------ 275 (862)
+-|+=.|+-++-.+. |+-+.-+-++ -..|++++- -+.==|-+.+..|.+.+... |...
T Consensus 194 plVvgsAv~AF~evC-----PerldLIHkn-yrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~ 267 (968)
T KOG1060|consen 194 PLVVGSAVMAFEEVC-----PERLDLIHKN-YRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCN 267 (968)
T ss_pred CcchhHHHHHHHHhc-----hhHHHHhhHH-HHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCccccc
Confidence 888888877775543 3322221111 223566663 23334666777777766542 3110
Q ss_pred ---------hc-----cc----eEEE-ecCCCcHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHH
Q 002971 276 ---------AH-----EI----KVFF-CKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIG 336 (862)
Q Consensus 276 ---------~~-----~~----~~~~-~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~ 336 (862)
.+ .. .... |+++...++-+-.-.+.|.|+-..-+..|++-|..-+++ ..+.+.-+++.|.
T Consensus 268 ~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~~i~kaLvrLLrs-~~~vqyvvL~nIa 346 (968)
T KOG1060|consen 268 LKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVTKIAKALVRLLRS-NREVQYVVLQNIA 346 (968)
T ss_pred ccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHHHHHHHHHHHHhc-CCcchhhhHHHHH
Confidence 01 11 1112 244556667777777777777776677777777765443 4455666677777
Q ss_pred HHHHhhhHhHHHHHHHHHHHHhhhcchhHHH-HHHHHHHHHHhCcccHHHHHHHHHHhhccCCchHHHHHHHHHHhhccc
Q 002971 337 RCAIKLERAAERCISVLLELIKIKVNYVVQE-AIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAE 415 (862)
Q Consensus 337 ~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e-~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~ 415 (862)
.++.+-+.-++-|+... ++...+.+...- =++.+..++. ..--..++..+-.|+.+-+. +.-++.+--||.++.
T Consensus 347 ~~s~~~~~lF~P~lKsF--fv~ssDp~~vk~lKleiLs~La~--esni~~ILrE~q~YI~s~d~-~faa~aV~AiGrCA~ 421 (968)
T KOG1060|consen 347 TISIKRPTLFEPHLKSF--FVRSSDPTQVKILKLEILSNLAN--ESNISEILRELQTYIKSSDR-SFAAAAVKAIGRCAS 421 (968)
T ss_pred HHHhcchhhhhhhhhce--EeecCCHHHHHHHHHHHHHHHhh--hccHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHH
Confidence 77777665555444322 122222222111 1223344432 22233455566666654433 344567788899988
Q ss_pred ccCC-HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcccCCCChHHHHHHHHHHHHh
Q 002971 416 RIDN-ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLL 489 (862)
Q Consensus 416 ~i~~-~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~~~~~~~~~i~~~l~~~~~~s~~~dvrdRA~~y~~ll 489 (862)
.+.. +...+.-++.....++..|-......+=+|..+.|.+ -.+.+.++.+.. ++. .-=+-||...|=+-
T Consensus 422 ~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~-h~~ii~~La~ll--dti-~vp~ARA~IiWLig 492 (968)
T KOG1060|consen 422 RIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAE-HLEILFQLARLL--DTI-LVPAARAGIIWLIG 492 (968)
T ss_pred hhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHH-HHHHHHHHHHHh--hhh-hhhhhhceeeeeeh
Confidence 7654 5677888888888888888888888888888887764 334666665542 322 23367787777553
No 34
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.46 E-value=3.2e-05 Score=89.86 Aligned_cols=258 Identities=16% Similarity=0.179 Sum_probs=172.5
Q ss_pred chHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHH-----HHHHHhhcCCCCHHHHhHHHHHhcCCC-hhhhHHHH-
Q 002971 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILA-----VNTFVKDSQDPNPLIRALAVRTMGCIR-VDKITEYL- 82 (862)
Q Consensus 10 lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~-----intl~kDl~~~n~~ir~lALr~l~~i~-~~~~~~~l- 82 (862)
+...+...+.+++..+|+++--.+.++++++.....++ ...+..-+.+++..+...|.+.|..+. .+.-.+.+
T Consensus 78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~ 157 (503)
T PF10508_consen 78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLF 157 (503)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHh
Confidence 34455568899999999999888988887765433332 334567779999999999999999986 34444455
Q ss_pred ----HHHHHhhhCCCChHHHHHHHHHHHHHHhhcccccc---ccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCc
Q 002971 83 ----CDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE---DRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPI 155 (862)
Q Consensus 83 ----~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~ 155 (862)
...+.+++..++..||-++..++.++.+.+|+... +.++++.+...|.++|..|..+|+-.+.+++....+..
T Consensus 158 ~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~ 237 (503)
T PF10508_consen 158 DSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQ 237 (503)
T ss_pred CcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHH
Confidence 78888888888999999999999999999997653 45789999999999999999999999999988433222
Q ss_pred ccccHHHHHHHHHHhcc--CCh-hHHHHHH---HHHhhcccccHHHH----HHHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 002971 156 FEITSHTLSKLLTALNE--CTE-WGQVFIL---DALSRYKAADAREA----ENIVERVTPRLQHANCAVVLSAVKMILQQ 225 (862)
Q Consensus 156 ~~l~~~~~~~Ll~~l~~--~~~-w~q~~iL---~~L~~~~~~~~~~~----~~il~~v~~~l~~~n~aV~~eai~~i~~~ 225 (862)
+-.....+.+|++.+.+ .+| +.-..+. +++......++... ..+++.+...+.+.+......|+-++..+
T Consensus 238 yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~i 317 (503)
T PF10508_consen 238 YLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQI 317 (503)
T ss_pred HHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 22223567788877754 356 5444433 33333332233222 34566666667777776665555555544
Q ss_pred hhccCChHHHHHHHHhc-------ccchhhcc-cCChhHHHHHHHHHHHHHhh
Q 002971 226 MELITSTDVVRNLCKKM-------APPLVTLL-SAEPEIQYVALRNINLIVQR 270 (862)
Q Consensus 226 ~~~~~~~~~~~~~~~~~-------~~~L~~ll-s~~~~iry~aL~~l~~i~~~ 270 (862)
. .+.+....+..+- ...+.... +...++|--+|+++..|...
T Consensus 318 g---st~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~ 367 (503)
T PF10508_consen 318 G---STVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTS 367 (503)
T ss_pred h---CCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 2 2333333221111 11111222 34567888888888888643
No 35
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=0.00012 Score=83.07 Aligned_cols=307 Identities=14% Similarity=0.118 Sum_probs=200.9
Q ss_pred CCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC--hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccccc
Q 002971 40 QPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE 117 (862)
Q Consensus 40 ~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~--~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~ 117 (862)
.||+|.=..+-+..=|+++-||+|--|+-.|-.+- =||-++..+|-++.-|.|++|-|-..|+-.++-+.+++|.-.-
T Consensus 138 TpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL 217 (877)
T KOG1059|consen 138 TPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL 217 (877)
T ss_pred CchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc
Confidence 57788888888888889999999999999998765 5899999999999999999999999999999999999998765
Q ss_pred ccchHHHHHHhhcC-CChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChh-HHHHHHHHHhhc-----cc
Q 002971 118 DRGFLESLKDLISD-NNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEW-GQVFILDALSRY-----KA 190 (862)
Q Consensus 118 ~~~~~~~l~~lL~d-~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w-~q~~iL~~L~~~-----~~ 190 (862)
. +.|.+.++|-+ +|-=|+.-.+.++..+.+-.|.- -.+.+..|++.+.....- +.-.+++.+-.- .+
T Consensus 218 ~--LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRL----gKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~ 291 (877)
T KOG1059|consen 218 Q--LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRL----GKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMS 291 (877)
T ss_pred c--ccHHHHHHHhccCCCeehHHHHHHHhhccccCchh----hhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCC
Confidence 3 88999999864 34444445555555555444321 122233333333221110 001111111111 11
Q ss_pred ccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhccc-CChhHHHHHHHHHHHHHh
Q 002971 191 ADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQ 269 (862)
Q Consensus 191 ~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~lls-~~~~iry~aL~~l~~i~~ 269 (862)
.+...+...+.++..++..++.-..|=...++.++++ .+|.++.. -...++++|+ +|+.||.=||+.+.-|+.
T Consensus 292 d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~k--tHp~~Vqa----~kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 292 DHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILK--THPKAVQA----HKDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred CcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhh--hCHHHHHH----hHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 2233334445556666666676666766666666654 46666543 2233467774 799999999999999887
Q ss_pred hCh--hhhhccceEEEecCCCcHHHHHHHHHHHHHhcCcCcHHHHHHH------HHHhhhhccHHHHHHHHHHHHHHHHh
Q 002971 270 RRP--TILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLE------FKEYATEVDVDFVRKAVRAIGRCAIK 341 (862)
Q Consensus 270 ~~p--~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~e------L~~y~~~~d~~~~~~~i~~I~~la~k 341 (862)
+.. ++++.-+.. ....++...|.+-+.-+..+|..+|...|.+- |.+.++-.-.+.-+.+...|-.++.|
T Consensus 366 kkNl~eIVk~LM~~--~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iR 443 (877)
T KOG1059|consen 366 KKNLMEIVKTLMKH--VEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIR 443 (877)
T ss_pred hhhHHHHHHHHHHH--HHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHhee
Confidence 642 233321111 12355678899999999999999998877552 22222222233444556667778888
Q ss_pred hhHhHHHHHHHHHHHHhhh
Q 002971 342 LERAAERCISVLLELIKIK 360 (862)
Q Consensus 342 ~~~~~~~~v~~ll~ll~~~ 360 (862)
.+..-...|+.+..++...
T Consensus 444 V~~iR~fsV~~m~~Ll~~~ 462 (877)
T KOG1059|consen 444 VPSIRPFSVSQMSALLDDP 462 (877)
T ss_pred chhhhHhHHHHHHHHHhch
Confidence 8887778888888888744
No 36
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=98.38 E-value=1.8e-06 Score=79.37 Aligned_cols=80 Identities=19% Similarity=0.243 Sum_probs=59.6
Q ss_pred ccccccCCCCCceEEEEEEEe--eCCeeEEEEEEEecCCCCcccceeeecccccCcccCCCC-CCCcCCCCCeeeEEEee
Q 002971 635 LPVVLPASTGQGLQIGAELTR--QDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGAL-QVPQLQPGTSGRTLLPM 711 (862)
Q Consensus 635 ~~~l~~~~~~~gL~I~~~~~~--~~~~~~l~l~~~N~s~~~it~f~~q~~~n~~gl~~~~~~-~~~~l~pg~~~~~~i~i 711 (862)
.+++|+ .++|+|.+++.+ +++.+++.++|+|++.++|++|.+++..+. +++..-.+ ....|+||+++++.+.|
T Consensus 2 ~~~~ye---~~~l~I~~~~~~~~~~~~~~i~~~f~N~s~~~it~f~~q~avpk-~~~l~l~~~s~~~i~p~~~i~Q~~~v 77 (115)
T PF02883_consen 2 EGVLYE---DNGLQIGFKSEKSPNPNQGRIKLTFGNKSSQPITNFSFQAAVPK-SFKLQLQPPSSSTIPPGQQITQVIKV 77 (115)
T ss_dssp EEEEEE---ETTEEEEEEEEECCETTEEEEEEEEEE-SSS-BEEEEEEEEEBT-TSEEEEEESS-SSB-TTTEEEEEEEE
T ss_pred CEEEEe---CCCEEEEEEEEecCCCCEEEEEEEEEECCCCCcceEEEEEEecc-ccEEEEeCCCCCeeCCCCeEEEEEEE
Confidence 356776 478999999998 899999999999999999999999995431 33333222 34588999999999999
Q ss_pred eecCCCCC
Q 002971 712 VLFQNMSA 719 (862)
Q Consensus 712 ~~~~~~~~ 719 (862)
.+ .++..
T Consensus 78 ~~-~~~~~ 84 (115)
T PF02883_consen 78 EN-SPFSE 84 (115)
T ss_dssp EE-SS-BS
T ss_pred EE-eeccc
Confidence 99 76654
No 37
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=4e-05 Score=85.83 Aligned_cols=260 Identities=18% Similarity=0.241 Sum_probs=191.1
Q ss_pred cchHHHhHhcc-CCCcchHHHHHHHHHHhcCCCCcHHHHHHH-----HHHhhcCCCCHHHHhHHHHHhcCCC--hhhhHH
Q 002971 9 SLFTDVVNCMQ-TENLELKKLVYLYLINYAKSQPDLAILAVN-----TFVKDSQDPNPLIRALAVRTMGCIR--VDKITE 80 (862)
Q Consensus 9 ~lf~~vv~l~~-s~~~~~Kkl~Yl~l~~~~~~~~el~~L~in-----tl~kDl~~~n~~ir~lALr~l~~i~--~~~~~~ 80 (862)
...+..|.++. .++..++.-+--++.+++...+|..-.+++ -|.+-+.++++.++.-|.-+||+|. ++..-.
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd 188 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRD 188 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHH
Confidence 45677788876 455888888999999999877665444443 3788899999999999999999997 344333
Q ss_pred HH-----HHHHHhhhCCCCh-HHHHHHHHHHHHHHhhc-cc--cccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcC
Q 002971 81 YL-----CDPLQRCLKDDDP-YVRKTAAICVAKLYDIN-AE--LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (862)
Q Consensus 81 ~l-----~~~v~~~l~d~~~-yVRk~A~~~l~kl~~~~-p~--~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 151 (862)
++ ++++...+...++ -.+|.|..++..+++.. |. .-.....++.|..+|.+.|+.|+..|+-++.++....
T Consensus 189 ~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ 268 (514)
T KOG0166|consen 189 YVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS 268 (514)
T ss_pred HHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 33 4677777777665 67889999999999854 42 2222347889999999999999999999999998664
Q ss_pred CCC-cccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHH-----HHHHhhc-CCChHHHHHHHHHHHH
Q 002971 152 SRP-IFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVE-----RVTPRLQ-HANCAVVLSAVKMILQ 224 (862)
Q Consensus 152 ~~~-~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~-----~v~~~l~-~~n~aV~~eai~~i~~ 224 (862)
... ...+..+.+++|+..|..+.+=.++-.|+.+......++...+.+++ .+..++. +....+.-||+-++.+
T Consensus 269 ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSN 348 (514)
T KOG0166|consen 269 NEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISN 348 (514)
T ss_pred hHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 322 12334456788888888888888888999998877777666555543 4455555 4455799999999988
Q ss_pred hhhccCChHHHHH-HHHhcccchhhccc-CChhHHHHHHHHHHHHHhh
Q 002971 225 QMELITSTDVVRN-LCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQR 270 (862)
Q Consensus 225 ~~~~~~~~~~~~~-~~~~~~~~L~~lls-~~~~iry~aL~~l~~i~~~ 270 (862)
+.. .+++-++. +-..+.+.|+.+|+ .+-.+|--|..+|..+...
T Consensus 349 ItA--G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 349 ITA--GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred hhc--CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 743 45544443 33367777888884 6777999999988877654
No 38
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=98.30 E-value=0.00057 Score=75.77 Aligned_cols=128 Identities=24% Similarity=0.351 Sum_probs=77.5
Q ss_pred HHHHHHHhCcccHHHHHHHHHHhhccCC----chHHHHHHHHHHhhcccccCCH---HHHHHHHhhh-------------
Q 002971 371 VIKDIFRRYPNTYESIIATLCESLDTLD----EPEAKASMIWIIGEYAERIDNA---DELLESFLES------------- 430 (862)
Q Consensus 371 ~l~~i~~~~p~~~~~~i~~L~~~l~~~~----~~~~~~~~~wilGEy~~~i~~~---~~~l~~~~~~------------- 430 (862)
.+-.+++.+|.+-...-+.+.+.+.... ..+....++|+||||+.--.+. .++++.+.+.
T Consensus 291 ~ll~lfk~~PsLvv~l~~~ilef~g~~~~~~~k~~l~~hlvWaIGEy~s~~~d~rct~~~i~~~fE~LE~llyE~~~~~~ 370 (459)
T PF14764_consen 291 QLLALFKRHPSLVVELSKEILEFLGSASNIHSKEELFTHLVWAIGEYLSVSYDRRCTVEQINEFFEALEALLYEVTQSRR 370 (459)
T ss_pred HHHHHHHhCcHHHHHhHHHHHHHhcccccccchhHHHHHHHHHHhcccccccCCccCHHHHHHHHHHHHHHHHHHhhccc
Confidence 4455666677654333344444444332 2233457899999998654332 4444443321
Q ss_pred -----CCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHh------------cccCCCChHHHHHHHHHHHHhcCCH
Q 002971 431 -----FPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNN------------ATVETDNPDLRDRAYIYWRLLSTDP 493 (862)
Q Consensus 431 -----~~~e~~~v~~~iLta~~Kl~~~~~~~~~~~~i~~~l~~------------~~~~s~~~dvrdRA~~y~~ll~~~~ 493 (862)
....++.+-+.++|+++|++.|.++ .-+.+.-.|.+ +.....+..|..||.||+.||+. |
T Consensus 371 ~~~~~~~~~~~rl~~~lmt~laKLAsr~~d--l~pRv~l~LsK~~~~~~s~~~~~~~~~~~~~~v~~RA~el~~LLk~-P 447 (459)
T PF14764_consen 371 DPSASRPSSQPRLMTVLMTALAKLASRSQD--LIPRVSLCLSKMRTLVQSPAVSSVYSEEDDEAVLTRATELLNLLKM-P 447 (459)
T ss_pred cccccCCCCchhHHHHHHHHHHHHHHhCHh--hhHHHHHHHHHHHHhccCCccccccCcccHHHHHHHHHHHHHHhcC-c
Confidence 1234577788899999999999886 33332222221 12455688999999999999985 6
Q ss_pred HHHHHhhcc
Q 002971 494 EAAKDVVLA 502 (862)
Q Consensus 494 ~~~~~~v~~ 502 (862)
..+.. |+.
T Consensus 448 svA~~-vL~ 455 (459)
T PF14764_consen 448 SVAQF-VLT 455 (459)
T ss_pred hHHHH-hcC
Confidence 65544 444
No 39
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.25 E-value=0.00088 Score=76.25 Aligned_cols=101 Identities=16% Similarity=0.170 Sum_probs=74.5
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCC-ChHHHHHHHHHHHHHHhhccc-cccc-cchHH
Q 002971 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDD-DPYVRKTAAICVAKLYDINAE-LVED-RGFLE 123 (862)
Q Consensus 47 ~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~d~-~~yVRk~A~~~l~kl~~~~p~-~~~~-~~~~~ 123 (862)
.+.+++-|..+.+|++|--.-|+.+-+.+.==++.+.+.++....++ ++--|.+.+-|+-++..+..= .++. ..+++
T Consensus 477 mistmrpDidn~deYVRnttarafavvasalgip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ 556 (1172)
T KOG0213|consen 477 MISTMRPDIDNKDEYVRNTTARAFAVVASALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVK 556 (1172)
T ss_pred HHHhhcCCcccccHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHH
Confidence 46789999999999999888888876665555567777888888885 888999999999888765321 1111 13778
Q ss_pred HHHHhhcCCChhHHH---HHHHHHHHH
Q 002971 124 SLKDLISDNNPMVVA---NAVAALAEI 147 (862)
Q Consensus 124 ~l~~lL~d~d~~V~~---~a~~~l~~i 147 (862)
.|..+|.|.+.-|.. +|+++|.+.
T Consensus 557 ii~~gl~De~qkVR~itAlalsalaea 583 (1172)
T KOG0213|consen 557 IIEHGLKDEQQKVRTITALALSALAEA 583 (1172)
T ss_pred HHHHhhcccchhhhhHHHHHHHHHHHh
Confidence 888999998877754 445555444
No 40
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.14 E-value=0.0084 Score=73.87 Aligned_cols=160 Identities=16% Similarity=0.163 Sum_probs=117.2
Q ss_pred CcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC--hhhhH--HHHHHHHHhhhCCCChHH
Q 002971 22 NLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKIT--EYLCDPLQRCLKDDDPYV 97 (862)
Q Consensus 22 ~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~--~~~~~--~~l~~~v~~~l~d~~~yV 97 (862)
++..-++.|.|+..-..-.. ..--..+.|..-+..+-+-+|.-|||+++.|. .|.+. +.+-..|..-+.|++.-|
T Consensus 793 d~~~a~li~~~la~~r~f~~-sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasV 871 (1692)
T KOG1020|consen 793 DDDDAKLIVFYLAHARSFSQ-SFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASV 871 (1692)
T ss_pred cchhHHHHHHHHHhhhHHHH-hhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHH
Confidence 34455666666543221111 11223444555567788999999999999987 34444 677788999999999999
Q ss_pred HHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhH
Q 002971 98 RKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWG 177 (862)
Q Consensus 98 Rk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~ 177 (862)
|-+|+--+.|..--+|+.+.. +.+.|.+-..|+..+|.-.++..+.+||...|. |...+....+++..+.|-..-.
T Consensus 872 REAaldLvGrfvl~~~e~~~q--yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pd--f~~i~~~cakmlrRv~DEEg~I 947 (1692)
T KOG1020|consen 872 REAALDLVGRFVLSIPELIFQ--YYDQIIERILDTGVSVRKRVIKILRDICEETPD--FSKIVDMCAKMLRRVNDEEGNI 947 (1692)
T ss_pred HHHHHHHHhhhhhccHHHHHH--HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCC--hhhHHHHHHHHHHHhccchhHH
Confidence 999999999999999999974 889999999999999999999999999998765 6666677777777766544433
Q ss_pred HHHHHHHHh
Q 002971 178 QVFILDALS 186 (862)
Q Consensus 178 q~~iL~~L~ 186 (862)
|--..+.+.
T Consensus 948 ~kLv~etf~ 956 (1692)
T KOG1020|consen 948 KKLVRETFL 956 (1692)
T ss_pred HHHHHHHHH
Confidence 433444443
No 41
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.0013 Score=76.07 Aligned_cols=175 Identities=18% Similarity=0.241 Sum_probs=118.9
Q ss_pred HhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHH
Q 002971 87 QRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKL 166 (862)
Q Consensus 87 ~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~L 166 (862)
.|++.+.+---+|.-.+|+.=+..-..|+.-- +.+.|++=|+.+|.-|++-|+++|..|+... +.+..+...
T Consensus 76 lKLias~~f~dKRiGYLaamLlLdE~qdvllL--ltNslknDL~s~nq~vVglAL~alg~i~s~E------mardlapeV 147 (866)
T KOG1062|consen 76 LKLIASDNFLDKRIGYLAAMLLLDERQDLLLL--LTNSLKNDLNSSNQYVVGLALCALGNICSPE------MARDLAPEV 147 (866)
T ss_pred HHHhcCCCchHHHHHHHHHHHHhccchHHHHH--HHHHHHhhccCCCeeehHHHHHHhhccCCHH------HhHHhhHHH
Confidence 45666666666778888877776666565431 4466777777889999999999999886431 222233333
Q ss_pred HHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHHHhcccch
Q 002971 167 LTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPL 246 (862)
Q Consensus 167 l~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L 246 (862)
-+.+...+|+..-+.+-++.++....++..+.++.....+|..++.+|+..++..+..+.. .+++.+... +++++.|
T Consensus 148 e~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~--~~~~~l~~f-r~l~~~l 224 (866)
T KOG1062|consen 148 ERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCK--ISPDALSYF-RDLVPSL 224 (866)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHh--cCHHHHHHH-HHHHHHH
Confidence 3444568999999988888888888888888888888899999999999999998887754 244444321 2233333
Q ss_pred hhcc----c------------CChhHHHHHHHHHHHHHhhCh
Q 002971 247 VTLL----S------------AEPEIQYVALRNINLIVQRRP 272 (862)
Q Consensus 247 ~~ll----s------------~~~~iry~aL~~l~~i~~~~p 272 (862)
++.| . .+|=+|.-.|+.|..+.+.++
T Consensus 225 V~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~ 266 (866)
T KOG1062|consen 225 VKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDA 266 (866)
T ss_pred HHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCc
Confidence 3222 1 245567777777777666544
No 42
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.00 E-value=0.0085 Score=68.59 Aligned_cols=421 Identities=17% Similarity=0.197 Sum_probs=221.5
Q ss_pred hHhccCCCcchHHHHHHHHHHhcCCCC---c-HHHHHHHHHHhhcCCCCHHHHhHHH-------------HHhcCCChhh
Q 002971 15 VNCMQTENLELKKLVYLYLINYAKSQP---D-LAILAVNTFVKDSQDPNPLIRALAV-------------RTMGCIRVDK 77 (862)
Q Consensus 15 v~l~~s~~~~~Kkl~Yl~l~~~~~~~~---e-l~~L~intl~kDl~~~n~~ir~lAL-------------r~l~~i~~~~ 77 (862)
++-..|+|-+.||++...+..+..... + +-.-+...|-+ ++..|-+|+ ..-..++..+
T Consensus 642 ~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~-----~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~ 716 (1172)
T KOG0213|consen 642 IREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFF-----SFWGRRMALDRRNYKQLVDTTVEIAAKVGSDP 716 (1172)
T ss_pred HHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHh-----hhhhhhhhccccchhhHHHHHHHHHHHhCchH
Confidence 345789999999999999888775531 1 00011222211 233333333 3344556665
Q ss_pred hHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccc----cchHHHHHHhhc--CCChhHHHHHHHHHHHHhhcC
Q 002971 78 ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED----RGFLESLKDLIS--DNNPMVVANAVAALAEIEENS 151 (862)
Q Consensus 78 ~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~----~~~~~~l~~lL~--d~d~~V~~~a~~~l~~i~~~~ 151 (862)
++.-+ ..-+.|.++--||-++.++-|++..-+-.=-+ +.+++-|.-.+. +..-+|+...+.++..-.-..
T Consensus 717 ~v~R~----v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r 792 (1172)
T KOG0213|consen 717 IVSRV----VLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGR 792 (1172)
T ss_pred HHHHH----hhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhc
Confidence 55544 44456777777999999999999765532211 234555544554 345567777766654322222
Q ss_pred CCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccH-HHHHHHHHH----HHHhhcCCCh---HHHHHHHHHHH
Q 002971 152 SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADA-REAENIVER----VTPRLQHANC---AVVLSAVKMIL 223 (862)
Q Consensus 152 ~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~-~~~~~il~~----v~~~l~~~n~---aV~~eai~~i~ 223 (862)
. ...+++++..++..|+..++-......+++..+.+--. -.-++++.. +...|-.-.+ .-++.|+++|.
T Consensus 793 ~---kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~ 869 (1172)
T KOG0213|consen 793 V---KPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIV 869 (1172)
T ss_pred c---ccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHH
Confidence 2 23455667778888888888777777777665543100 000122222 2233333333 33467777776
Q ss_pred HhhhccCChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhChhhhhccceEEEecCCCcHHHHHHHHHHHHH
Q 002971 224 QQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIK 302 (862)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~ 302 (862)
+......-..-++ .+.|.|.-+| +++.-++--+++.+..|+.+.|+.+.
T Consensus 870 nvigm~km~pPi~----dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~-------------------------- 919 (1172)
T KOG0213|consen 870 NVIGMTKMTPPIK----DLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVS-------------------------- 919 (1172)
T ss_pred HhccccccCCChh----hhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCC--------------------------
Confidence 5432100001122 2445555556 55667888888999999988887542
Q ss_pred hcCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhc---------------------
Q 002971 303 LASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKV--------------------- 361 (862)
Q Consensus 303 l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~--------------------- 361 (862)
..-+-.|.=||++.+..-..++||.++...|-||.-..+ ...+++|++-|+...
T Consensus 920 ---aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGP--qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF 994 (1172)
T KOG0213|consen 920 ---AREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGP--QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF 994 (1172)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCH--HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch
Confidence 112333444444444445555556555555555554432 234444544443221
Q ss_pred --------------chhHHHHHHHHHHHHHhCcccHHHHHHHHHHhhcc-C-CchHH-HH----HHH-HHHhhcccccCC
Q 002971 362 --------------NYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDT-L-DEPEA-KA----SMI-WIIGEYAERIDN 419 (862)
Q Consensus 362 --------------~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~-~-~~~~~-~~----~~~-wilGEy~~~i~~ 419 (862)
-.|.+-++..+.-+++.-.+.-..-+..++..|++ + +...+ ++ ++- -.||-||.-..+
T Consensus 995 tVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~ed 1074 (1172)
T KOG0213|consen 995 TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCED 1074 (1172)
T ss_pred hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHH
Confidence 12222222222222222111111111111111211 1 11111 11 111 346666654433
Q ss_pred -HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcccCCCChHHHHHHHHHHHHhc
Q 002971 420 -ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLS 490 (862)
Q Consensus 420 -~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~~~~~~~~~i~~~l~~~~~~s~~~dvrdRA~~y~~ll~ 490 (862)
...+|..+..+..+.++.|+.....++--+..... ...+++++++-.. +..--||+| ||+.++
T Consensus 1075 a~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg---~~~~~~Y~~QGLF--HParkVR~~---yw~vyn 1138 (1172)
T KOG0213|consen 1075 ALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALG---PQAMLKYCLQGLF--HPARKVRKR---YWTVYN 1138 (1172)
T ss_pred HHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhc---hHHHHHHHHHhcc--CcHHHHHHH---HHHHHH
Confidence 23556666678888999999999888877766544 3678888888532 456689987 666665
No 43
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.00067 Score=76.54 Aligned_cols=347 Identities=14% Similarity=0.076 Sum_probs=197.3
Q ss_pred CCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCCh-----hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccc
Q 002971 40 QPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRV-----DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE 114 (862)
Q Consensus 40 ~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~-----~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~ 114 (862)
++.-..+..+.=.+-.......+|-.++.++..++. +...+.+...+.....|.++-||+.|+.+++.+.. .-.
T Consensus 152 ~~~~i~l~~~~a~~~~~~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e-g~k 230 (823)
T KOG2259|consen 152 EDIYILLLHGVAKVRSSISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSE-GFK 230 (823)
T ss_pred hhhHHHHHhhhHHHhhhcccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcc-ccc
Confidence 333344444443433344444566666777766663 23345666668888889999999999999998876 222
Q ss_pred cccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCC------CcccccHHHHHHHHHHhccCChhHHHHHHHHHhhc
Q 002971 115 LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR------PIFEITSHTLSKLLTALNECTEWGQVFILDALSRY 188 (862)
Q Consensus 115 ~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~------~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~ 188 (862)
+-. ....+..++|.|.+..|..+|+.++.-.....|. ...++....+.++|..+.|.+=-..+..-+.|..+
T Consensus 231 L~~--~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~ 308 (823)
T KOG2259|consen 231 LSK--ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEF 308 (823)
T ss_pred ccH--HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchH
Confidence 221 2457778899999999999999988766654422 12455667788999988765322334444555444
Q ss_pred ccccHHHHHHHHHH-HHH-----hhcCCChHHHHHHHHHH--HHhhhccCChH----HHHHHHHhcccchhhcccCC-hh
Q 002971 189 KAADAREAENIVER-VTP-----RLQHANCAVVLSAVKMI--LQQMELITSTD----VVRNLCKKMAPPLVTLLSAE-PE 255 (862)
Q Consensus 189 ~~~~~~~~~~il~~-v~~-----~l~~~n~aV~~eai~~i--~~~~~~~~~~~----~~~~~~~~~~~~L~~lls~~-~~ 255 (862)
..-+.+-..+.+++ +.. ...|.-+.-+++.-..- -.|.+..++++ ...-+..-+-++++.=+..+ -+
T Consensus 309 ~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~E 388 (823)
T KOG2259|consen 309 EQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYE 388 (823)
T ss_pred HHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHH
Confidence 32222111111111 111 11122222222110000 00001111111 11111001112233223222 48
Q ss_pred HHHHHHHHHHHHHhhChhhhhccceE-EEecCCCcHHHHHHHHHHHHHhcCcCcHH-HHHHHHHHhhhhccHHHHHHHHH
Q 002971 256 IQYVALRNINLIVQRRPTILAHEIKV-FFCKYNDPIYVKMEKLEIMIKLASDRNID-QVLLEFKEYATEVDVDFVRKAVR 333 (862)
Q Consensus 256 iry~aL~~l~~i~~~~p~~~~~~~~~-~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~-~Iv~eL~~y~~~~d~~~~~~~i~ 333 (862)
+|-.|..++..++...|.+-...+.. ...++|+..-+|.+++.-|..+++.--+. +.++.+++-+.+...++|..+-.
T Consensus 389 VR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l~e 468 (823)
T KOG2259|consen 389 VRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVDVREALRE 468 (823)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999999999765443331 12344555789999999999887653332 45666666777777777766555
Q ss_pred HHHHHHHhhh--HhHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCcccHHHHHHHHHH
Q 002971 334 AIGRCAIKLE--RAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCE 392 (862)
Q Consensus 334 ~I~~la~k~~--~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~ 392 (862)
-++.+ +++ +..+.|++-|++.|..-. .-.+++|..+.+|-+|++.+...+..++.+
T Consensus 469 lL~~~--~~~d~~~i~m~v~~lL~~L~kyP-qDrd~i~~cm~~iGqnH~~lv~s~m~rfl~ 526 (823)
T KOG2259|consen 469 LLKNA--RVSDLECIDMCVAHLLKNLGKYP-QDRDEILRCMGRIGQNHRRLVLSNMGRFLE 526 (823)
T ss_pred HHHhc--CCCcHHHHHHHHHHHHHHhhhCC-CCcHHHHHHHHHHhccChhhHHHHHHHHHH
Confidence 44322 333 345566666666665432 235688889999988888776666666654
No 44
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.92 E-value=0.017 Score=66.35 Aligned_cols=192 Identities=16% Similarity=0.245 Sum_probs=116.1
Q ss_pred chHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC--hhhhHHHHHHHHH
Q 002971 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQ 87 (862)
Q Consensus 10 lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~--~~~~~~~l~~~v~ 87 (862)
.|-.++..... +...|+|+--++..|++.-|++.--++|++..=+.|.+..||--|+|.|..++ +++.+.-+.+-+.
T Consensus 24 ~y~~il~~~kg-~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~ 102 (556)
T PF05918_consen 24 DYKEILDGVKG-SPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLV 102 (556)
T ss_dssp HHHHHHHGGGS--HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHH
T ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHH
Confidence 45666666664 68999999999999999999999999999999999999999999999999998 6789999999999
Q ss_pred hhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCccc----ccHHHH
Q 002971 88 RCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFE----ITSHTL 163 (862)
Q Consensus 88 ~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~----l~~~~~ 163 (862)
++|...++-.+..+=.++..+++.+|...-. ++.+.|..- ...|..|.--++..|.+-...-+...+. .-.-.+
T Consensus 103 QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~-~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~ 180 (556)
T PF05918_consen 103 QLLQTDDPVELDAVKNSLMSLLKQDPKGTLT-GLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIV 180 (556)
T ss_dssp HHTT---HHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHhcCcHHHHH-HHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHH
Confidence 9999988888877777888888888864321 233333211 1345667777777665533322222222 111112
Q ss_pred HHHHHHhccCC--hh-HHHHHHHHHhhccc-ccHHHHHHHHHHHH
Q 002971 164 SKLLTALNECT--EW-GQVFILDALSRYKA-ADAREAENIVERVT 204 (862)
Q Consensus 164 ~~Ll~~l~~~~--~w-~q~~iL~~L~~~~~-~~~~~~~~il~~v~ 204 (862)
..+.+.|.+++ |+ +-+.+|+.+..|.. ....-...+++.+.
T Consensus 181 ~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~ 225 (556)
T PF05918_consen 181 DEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIE 225 (556)
T ss_dssp HHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHH
Confidence 23333445543 33 22344555555432 23444445555554
No 45
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.92 E-value=4.4e-05 Score=66.27 Aligned_cols=84 Identities=30% Similarity=0.453 Sum_probs=67.2
Q ss_pred HHHHhhc-CCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHH
Q 002971 49 NTFVKDS-QDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKD 127 (862)
Q Consensus 49 ntl~kDl-~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~ 127 (862)
..|.+-| +|+|+.+|..|+++|+.++.++..+. +.+++.|+++.||..|+.++.++- + ...++.|.+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~~~~~~~----L~~~l~d~~~~vr~~a~~aL~~i~--~------~~~~~~L~~ 69 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGDPEAIPA----LIELLKDEDPMVRRAAARALGRIG--D------PEAIPALIK 69 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTHHHHHHH----HHHHHTSSSHHHHHHHHHHHHCCH--H------HHTHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHhHHHH----HHHHHcCCCHHHHHHHHHHHHHhC--C------HHHHHHHHH
Confidence 4567777 89999999999999999998866554 567779999999999999999873 2 236678888
Q ss_pred hhcC-CChhHHHHHHHHH
Q 002971 128 LISD-NNPMVVANAVAAL 144 (862)
Q Consensus 128 lL~d-~d~~V~~~a~~~l 144 (862)
++.| .+..|..+|+.+|
T Consensus 70 ~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 70 LLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHTC-SSHHHHHHHHHHH
T ss_pred HHcCCCcHHHHHHHHhhc
Confidence 8865 5666777777665
No 46
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.00034 Score=73.48 Aligned_cols=255 Identities=16% Similarity=0.156 Sum_probs=161.9
Q ss_pred HhHhccCCCcchHHHHHHHHHHhcCCCCcH----HHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhh-----hHH-HHH
Q 002971 14 VVNCMQTENLELKKLVYLYLINYAKSQPDL----AILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDK-----ITE-YLC 83 (862)
Q Consensus 14 vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el----~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~-----~~~-~l~ 83 (862)
|.-++++.+....+-+--++.+++-....- .++-...+...+..++-.+||.|..++.++.+-+ ++. --.
T Consensus 90 vl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL 169 (550)
T KOG4224|consen 90 VLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGAL 169 (550)
T ss_pred HHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccch
Confidence 344677888888888888877776544321 1112222555666778889999999999887532 222 113
Q ss_pred HHHHhhhCCCChHHHHHHHHHHHHHHhhc--cccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCC--CCccccc
Q 002971 84 DPLQRCLKDDDPYVRKTAAICVAKLYDIN--AELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS--RPIFEIT 159 (862)
Q Consensus 84 ~~v~~~l~d~~~yVRk~A~~~l~kl~~~~--p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~--~~~~~l~ 159 (862)
.++.++.++++--||+.|.-+++.+-... ...+.+.+-++.|..++...|+-|..-+..++..|.-... +...+--
T Consensus 170 ~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqae 249 (550)
T KOG4224|consen 170 EPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAE 249 (550)
T ss_pred hhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcc
Confidence 45666888999999999988888765432 2233345778999999999999999999999998875421 1112223
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHH-----HHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHH
Q 002971 160 SHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENI-----VERVTPRLQHANCAVVLSAVKMILQQMELITSTDV 234 (862)
Q Consensus 160 ~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~i-----l~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~ 234 (862)
++.++.|+....+.++-.++..=-.|..+..++ +....+ +..+..++++..--.+++.+-||-++.-.--++..
T Consensus 250 p~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~l 328 (550)
T KOG4224|consen 250 PKLVPALVDLMDDGSDKVKCQAGLALRNLASDT-EYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVL 328 (550)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHhhhcccc-hhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccc
Confidence 456778888888888887776544454443322 111122 23455667776655667777777433100012222
Q ss_pred HHHHHHhcccchhhccc-CCh-hHHHHHHHHHHHHHhhC
Q 002971 235 VRNLCKKMAPPLVTLLS-AEP-EIQYVALRNINLIVQRR 271 (862)
Q Consensus 235 ~~~~~~~~~~~L~~lls-~~~-~iry~aL~~l~~i~~~~ 271 (862)
+-.. -...||+++|+ ++. ++|.-|..++..++..+
T Consensus 329 I~da--gfl~pLVrlL~~~dnEeiqchAvstLrnLAass 365 (550)
T KOG4224|consen 329 IADA--GFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS 365 (550)
T ss_pred eecc--cchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh
Confidence 2111 24557889985 555 49999999998888743
No 47
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.90 E-value=0.0012 Score=73.74 Aligned_cols=435 Identities=18% Similarity=0.187 Sum_probs=221.5
Q ss_pred HHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCC-CChHHHHHHHHHHHHHHhhcc-ccccc-cchHHH
Q 002971 48 VNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINA-ELVED-RGFLES 124 (862)
Q Consensus 48 intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~d-~~~yVRk~A~~~l~kl~~~~p-~~~~~-~~~~~~ 124 (862)
+.+++-|..+.+|++|--.=|+.+-+...==++.+.+.+..+..+ +++--|.+.+-|+.++..+.. ..+.. .++.+.
T Consensus 283 vs~mrpDi~~~deYVRnvt~ra~~vva~algv~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~c 362 (975)
T COG5181 283 VSSMRPDITSKDEYVRNVTGRAVGVVADALGVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKC 362 (975)
T ss_pred eeeccCCcccccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHH
Confidence 456889999999999988888877665554456677778888887 488899999999988876532 11111 247788
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccH---------------HHHHHHHHHhc--------cCChhHHHHH
Q 002971 125 LKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS---------------HTLSKLLTALN--------ECTEWGQVFI 181 (862)
Q Consensus 125 l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~---------------~~~~~Ll~~l~--------~~~~w~q~~i 181 (862)
|.++|.|++--|..-+..+|..+++..++......- +.+..++++.. ++.-+.....
T Consensus 363 i~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~ 442 (975)
T COG5181 363 ISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREH 442 (975)
T ss_pred HHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHH
Confidence 899999988766544444444444433221111100 11223333321 1111122233
Q ss_pred HHHHhhcccccHHHHHH-------------------HHHHHHHhh-------cC-----CChHHHHHHHHH---------
Q 002971 182 LDALSRYKAADAREAEN-------------------IVERVTPRL-------QH-----ANCAVVLSAVKM--------- 221 (862)
Q Consensus 182 L~~L~~~~~~~~~~~~~-------------------il~~v~~~l-------~~-----~n~aV~~eai~~--------- 221 (862)
++++.+-....+++... +-+.|.+-+ ++ ++--|++.++-+
T Consensus 443 m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v 522 (975)
T COG5181 443 MEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRV 522 (975)
T ss_pred HHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHH
Confidence 33333222222222211 111111111 01 111233333222
Q ss_pred HHHhhhccCChH-HHH----HHHHhcccchhhcccCC-hhHHHHHHHHHHHHHhhC--------h---h-------hhhc
Q 002971 222 ILQQMELITSTD-VVR----NLCKKMAPPLVTLLSAE-PEIQYVALRNINLIVQRR--------P---T-------ILAH 277 (862)
Q Consensus 222 i~~~~~~~~~~~-~~~----~~~~~~~~~L~~lls~~-~~iry~aL~~l~~i~~~~--------p---~-------~~~~ 277 (862)
+-+++++..++. -.+ .++.++...|.++=-.+ -+-||. +.+..-.+.. | . ..++
T Consensus 523 ~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~--d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp 600 (975)
T COG5181 523 SRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLY--DSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKP 600 (975)
T ss_pred HHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHH--HHHHHHHHhccccccEEEecccceeeehhhccCc
Confidence 222222333321 111 22233333333322122 234442 2222211211 1 0 0123
Q ss_pred cc-----eEEEecCCCcHHHHHHHHHHHHHhcCc-CcH--HHHHH----HHHHhhhhccHHHHHHHHHHHHHHHHh--hh
Q 002971 278 EI-----KVFFCKYNDPIYVKMEKLEIMIKLASD-RNI--DQVLL----EFKEYATEVDVDFVRKAVRAIGRCAIK--LE 343 (862)
Q Consensus 278 ~~-----~~~~~l~~d~~~Ik~~~L~lL~~l~~~-~Nv--~~Iv~----eL~~y~~~~d~~~~~~~i~~I~~la~k--~~ 343 (862)
|+ .++..+.+.++.+|.+++++...|+-- +|+ ...+. -|.+|+.+.+++.--.++.||+.+..- +.
T Consensus 601 ~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 601 HLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred chHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhccc
Confidence 43 245667888999999999988776421 000 11122 234677788888777777777655432 21
Q ss_pred ---HhHHHHHHHHHHHHhhhc-------------------chhHHHHHHHHH----HHHH-hCcccHH------------
Q 002971 344 ---RAAERCISVLLELIKIKV-------------------NYVVQEAIIVIK----DIFR-RYPNTYE------------ 384 (862)
Q Consensus 344 ---~~~~~~v~~ll~ll~~~~-------------------~~v~~e~i~~l~----~i~~-~~p~~~~------------ 384 (862)
+-....+..+..+|+.+. +|+...-|.+|+ +.+. .+-+.++
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 123344445555554443 344444444432 1111 1112221
Q ss_pred ----HHHHHHHHhhccCCchH---HHHHHHHHHhhcccccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCC
Q 002971 385 ----SIIATLCESLDTLDEPE---AKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEG 457 (862)
Q Consensus 385 ----~~i~~L~~~l~~~~~~~---~~~~~~wilGEy~~~i~~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~~~~~ 457 (862)
.++..|.+.|+. ++-+ +-..++-|+|||+. +-.++-.+...|..-...||--+|.|+.-+|-...+.
T Consensus 761 iGPqdvL~~LlnnLkv-qeRq~RvctsvaI~iVae~cg----pfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~- 834 (975)
T COG5181 761 IGPQDVLDILLNNLKV-QERQQRVCTSVAISIVAEYCG----PFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQA- 834 (975)
T ss_pred cCHHHHHHHHHhcchH-HHHHhhhhhhhhhhhhHhhcC----chhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHH-
Confidence 122333333321 1111 23456788999986 3456777778888778889999999999888764432
Q ss_pred hHH---HHHHHHHhcccCCCChHHHHHHHHHHHHhcC
Q 002971 458 PQQ---MIQVVLNNATVETDNPDLRDRAYIYWRLLST 491 (862)
Q Consensus 458 ~~~---~i~~~l~~~~~~s~~~dvrdRA~~y~~ll~~ 491 (862)
..+ .+.-+|+-|.. +.|+-=||-|--..+=|..
T Consensus 835 s~dYvy~itPlleDAlt-DrD~vhRqta~nvI~Hl~L 870 (975)
T COG5181 835 SLDYVYSITPLLEDALT-DRDPVHRQTAMNVIRHLVL 870 (975)
T ss_pred HHHHHHHhhHHHHhhhc-ccchHHHHHHHHHHHHHhc
Confidence 222 23445666654 4788888888777666654
No 48
>PF14807 AP4E_app_platf: Adaptin AP4 complex epsilon appendage platform
Probab=97.83 E-value=0.00034 Score=61.74 Aligned_cols=101 Identities=12% Similarity=0.233 Sum_probs=78.0
Q ss_pred CCCCChHHHHHHhccCCCCccceeecCCCccCCHHHHHHHH-HhcCceeeeeccCCCCceEEEEEEecCCcc-EEEEEEe
Q 002971 753 DGRMERGSFLETWRSLPDSNEVLKDLPGVVVSNVEATLDLL-AASNMFFIAKRKNANQDVFYFSAKIPPGVP-FLIELTT 830 (862)
Q Consensus 753 ~~~~~~~~F~~~W~~l~~~~E~~~~~~~~~~~~~~~~~~~l-~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~-~L~~l~~ 830 (862)
|-.|+-++|-++|.+.++ |...+++.....+.+.+.+.| ++.++.+|..= |.+ ..++|...++.. ||+-.++
T Consensus 2 Pl~isTeeFG~~W~s~~~--e~k~~l~~~~~~t~~~~l~~l~~~l~lh~VevI---g~E-~I~A~~ll~~~~~~L~H~~~ 75 (104)
T PF14807_consen 2 PLQISTEEFGQLWLSFSN--ERKQNLPSSSQRTLPEFLQRLQQKLRLHVVEVI---GNE-GIFACQLLNSSPVCLLHCRV 75 (104)
T ss_pred CccccHHHHHHHHHcCCC--eEEEeccccCcCCHHHHHHHHHHhcCceEEEEe---Ccc-ceeeeeccCCCCeEEEEEEe
Confidence 667999999999999966 666666544445565556555 57999999741 223 567788887766 9999998
Q ss_pred ecCCCceEEEEecCCCchHHHHHHHHHHHHh
Q 002971 831 VIGNPGVKCAIKTPNPDIASLFFEAIETLLK 861 (862)
Q Consensus 831 ~~~~~~~~ltvrs~~~~v~~~l~~~i~~~l~ 861 (862)
.. +.+.+.+|++++.++..+....+.+|.
T Consensus 76 ~~--~~l~l~vrs~~~~l~d~ll~~~~~~~~ 104 (104)
T PF14807_consen 76 NA--GTLDLWVRSSDSPLTDCLLYQCQKILQ 104 (104)
T ss_pred cC--CeEEEEEEcCCCCcHHHHHHHHHHHhC
Confidence 65 489999999999999999999888763
No 49
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.77 E-value=0.0099 Score=70.71 Aligned_cols=320 Identities=21% Similarity=0.261 Sum_probs=172.6
Q ss_pred HHHHHhhcCCCCHHHHhHHHHHhcCCCh-----hhhH-HHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccc---ccc
Q 002971 48 VNTFVKDSQDPNPLIRALAVRTMGCIRV-----DKIT-EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VED 118 (862)
Q Consensus 48 intl~kDl~~~n~~ir~lALr~l~~i~~-----~~~~-~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~---~~~ 118 (862)
+..|.+=|.+.|+....+|+++|.++.. .+|. ..+++.+.+++.+.+.-+++.|+..++.+.- +++. +..
T Consensus 292 V~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSf-d~~~R~~mV~ 370 (708)
T PF05804_consen 292 VSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSF-DPELRSQMVS 370 (708)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCc-CHHHHHHHHH
Confidence 3345666778899999999999998862 3344 3678889999999999899998887777642 3332 233
Q ss_pred cchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCC-CcccccHHHHHHHHHHhccC-ChhHHHHHHHHHhhcccccHHHH
Q 002971 119 RGFLESLKDLISDNNPMVVANAVAALAEIEENSSR-PIFEITSHTLSKLLTALNEC-TEWGQVFILDALSRYKAADAREA 196 (862)
Q Consensus 119 ~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~-~~~~l~~~~~~~Ll~~l~~~-~~w~q~~iL~~L~~~~~~~~~~~ 196 (862)
.|++|.|..+|.|.+.. ..++.+|+.++..+.. ..+.-. ..++.+++.+... ++-.+..++.++..+. .+++.+
T Consensus 371 ~GlIPkLv~LL~d~~~~--~val~iLy~LS~dd~~r~~f~~T-dcIp~L~~~Ll~~~~~~v~~eliaL~iNLa-~~~rna 446 (708)
T PF05804_consen 371 LGLIPKLVELLKDPNFR--EVALKILYNLSMDDEARSMFAYT-DCIPQLMQMLLENSEEEVQLELIALLINLA-LNKRNA 446 (708)
T ss_pred CCCcHHHHHHhCCCchH--HHHHHHHHHhccCHhhHHHHhhc-chHHHHHHHHHhCCCccccHHHHHHHHHHh-cCHHHH
Confidence 58999999999876543 3467778888765321 111111 1233333332221 2222222333332222 112222
Q ss_pred HHHHH-----HHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhcccCChhHHHHHHHHHHHHHhhC
Q 002971 197 ENIVE-----RVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRR 271 (862)
Q Consensus 197 ~~il~-----~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~lls~~~~iry~aL~~l~~i~~~~ 271 (862)
+.+.+ .+..+.-+...+.++..+|-+.. .++..+-.....+..|+..
T Consensus 447 qlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~---------------------------h~~~~k~~f~~~i~~L~~~- 498 (708)
T PF05804_consen 447 QLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQ---------------------------HDGPLKELFVDFIGDLAKI- 498 (708)
T ss_pred HHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHh---------------------------cCchHHHHHHHHHHHHHHH-
Confidence 21111 11111101111222222222211 1112222222222222211
Q ss_pred hhhhhccceEEEecCCCcHHHHHHHHHHHHHhcCc-CcHHHHHHH--HHHhhh------hccHHHHHHHHHHHHHHHHhh
Q 002971 272 PTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASD-RNIDQVLLE--FKEYAT------EVDVDFVRKAVRAIGRCAIKL 342 (862)
Q Consensus 272 p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~-~Nv~~Iv~e--L~~y~~------~~d~~~~~~~i~~I~~la~k~ 342 (862)
+...++.......|-+|..|.-+ -++..++++ |..|+. .+++++.-++|..+|.+|..
T Consensus 499 ------------v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d- 565 (708)
T PF05804_consen 499 ------------VSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD- 565 (708)
T ss_pred ------------hhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC-
Confidence 12234566777777788777643 377888775 455554 24678889999999987742
Q ss_pred hHhHH-----HHHHHHHHHHhhhc--chhHHHHHHHHHHHHHhCcccHHHHH------HHHHHhhccCCchHHHH---HH
Q 002971 343 ERAAE-----RCISVLLELIKIKV--NYVVQEAIIVIKDIFRRYPNTYESII------ATLCESLDTLDEPEAKA---SM 406 (862)
Q Consensus 343 ~~~~~-----~~v~~ll~ll~~~~--~~v~~e~i~~l~~i~~~~p~~~~~~i------~~L~~~l~~~~~~~~~~---~~ 406 (862)
+..+. .+++.++.++.... +.++-.++.++.+++.+ ++.++.++ ..|++.+.+ +.+++++ .+
T Consensus 566 ~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h-~~tr~~ll~~~~~~~ylidL~~d-~N~~ir~~~d~~ 643 (708)
T PF05804_consen 566 PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH-EETREVLLKETEIPAYLIDLMHD-KNAEIRKVCDNA 643 (708)
T ss_pred HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC-hHHHHHHHhccchHHHHHHHhcC-CCHHHHHHHHHH
Confidence 22222 45889999998765 44555566677777765 55555443 334444433 2334433 45
Q ss_pred HHHHhhccc
Q 002971 407 IWIIGEYAE 415 (862)
Q Consensus 407 ~wilGEy~~ 415 (862)
.-|++||..
T Consensus 644 Ldii~e~d~ 652 (708)
T PF05804_consen 644 LDIIAEYDE 652 (708)
T ss_pred HHHHHHhCH
Confidence 677777754
No 50
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.65 E-value=0.0012 Score=65.63 Aligned_cols=93 Identities=23% Similarity=0.307 Sum_probs=77.8
Q ss_pred ChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccC
Q 002971 94 DPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNEC 173 (862)
Q Consensus 94 ~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~ 173 (862)
+|-||..|+.++.-+...+|.+++. |.+.+..+|.|.++.|..+|+.+|..+...+. ...-...+..++..+.|.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~--~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~---ik~k~~l~~~~l~~l~D~ 75 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEP--YLPNLYKCLRDEDPLVRKTALLVLSHLILEDM---IKVKGQLFSRILKLLVDE 75 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHh--HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc---eeehhhhhHHHHHHHcCC
Confidence 5889999999999999999999985 99999999999999999999999999877653 333334458888899999
Q ss_pred ChhHHHHHHHHHhhcccc
Q 002971 174 TEWGQVFILDALSRYKAA 191 (862)
Q Consensus 174 ~~w~q~~iL~~L~~~~~~ 191 (862)
+|..+-....++..+...
T Consensus 76 ~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 76 NPEIRSLARSFFSELLKK 93 (178)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 998887777777666544
No 51
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.64 E-value=0.013 Score=68.86 Aligned_cols=331 Identities=18% Similarity=0.242 Sum_probs=189.8
Q ss_pred hHHHhHhccCCCcc-----hHHHHHHHHHHhc----CCCCcHHHHHHHHHHhhcCC--CCHHHHhHHHHHhcCCCh---h
Q 002971 11 FTDVVNCMQTENLE-----LKKLVYLYLINYA----KSQPDLAILAVNTFVKDSQD--PNPLIRALAVRTMGCIRV---D 76 (862)
Q Consensus 11 f~~vv~l~~s~~~~-----~Kkl~Yl~l~~~~----~~~~el~~L~intl~kDl~~--~n~~ir~lALr~l~~i~~---~ 76 (862)
|...+.++..+.++ +-|=+|..+-.++ ..-|+.+--.+-.+.+|+.+ .|.-+|-+|+-++|-++- .
T Consensus 773 y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~ 852 (1233)
T KOG1824|consen 773 YISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL 852 (1233)
T ss_pred HHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC
Confidence 44445555544433 3344444443332 12234344455677788874 578999999999999872 2
Q ss_pred hhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcc
Q 002971 77 KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIF 156 (862)
Q Consensus 77 ~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~ 156 (862)
.=.+.+-..+.+++.+++.-|+++|+.|++.+---+ .+ .|++.|.... +.+|-=..-.+++|-|+......
T Consensus 853 s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgn---l~--~yLpfil~qi-~sqpk~QyLLLhSlkevi~~~sv--- 923 (1233)
T KOG1824|consen 853 SPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGN---LP--KYLPFILEQI-ESQPKRQYLLLHSLKEVIVSASV--- 923 (1233)
T ss_pred CcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCc---hH--hHHHHHHHHH-hcchHhHHHHHHHHHHHHHHhcc---
Confidence 233566667899999999999999999999886421 11 2555555544 34444455556666665443221
Q ss_pred cccHHHHHHHHHHhc---cCC-hhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCCh---HHHHHHHHHHHHhhhcc
Q 002971 157 EITSHTLSKLLTALN---ECT-EWGQVFILDALSRYKAADAREAENIVERVTPRLQHANC---AVVLSAVKMILQQMELI 229 (862)
Q Consensus 157 ~l~~~~~~~Ll~~l~---~~~-~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~---aV~~eai~~i~~~~~~~ 229 (862)
+...+.+.++...|- +|. +...-.+-++|.++.--+++ .++.++...+.+..+ +.+..|+|..+.-
T Consensus 924 d~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epe---sLlpkL~~~~~S~a~~~rs~vvsavKfsisd---- 996 (1233)
T KOG1824|consen 924 DGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPE---SLLPKLKLLLRSEASNTRSSVVSAVKFSISD---- 996 (1233)
T ss_pred chhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChH---HHHHHHHHHhcCCCcchhhhhhheeeeeecC----
Confidence 122233444443331 333 34445556677766655543 456666656655544 4455555554431
Q ss_pred CChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhChhhhhc-----------------c------ceEEEec
Q 002971 230 TSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAH-----------------E------IKVFFCK 285 (862)
Q Consensus 230 ~~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~~~~~-----------------~------~~~~~~l 285 (862)
.+.-+..+.++.++....++ ..+.++|-+||..++..+...|.+++. . +.-|.--
T Consensus 997 -~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~ 1075 (1233)
T KOG1824|consen 997 -QPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHT 1075 (1233)
T ss_pred -CCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCcccc
Confidence 23333333333333334455 578899999999999988777654321 1 1234444
Q ss_pred CCCcHHHHHHHHHHHHHhcCc----CcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhh
Q 002971 286 YNDPIYVKMEKLEIMIKLASD----RNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKI 359 (862)
Q Consensus 286 ~~d~~~Ik~~~L~lL~~l~~~----~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~ 359 (862)
-||-..+|+.|.|.+|.|.+. -++.+-++.+..=+.+ ..+++--...-+.++|...|.....-+|.+++=|+.
T Consensus 1076 VDdgLd~RKaaFEcmytLLdscld~~dit~Fl~~~~~GL~D-hydiKmlt~l~l~rLa~lcPs~VlqrlD~l~EpLr~ 1152 (1233)
T KOG1824|consen 1076 VDDGLDLRKAAFECMYTLLDSCLDRLDITEFLNHVEDGLED-HYDIKMLTFLMLARLADLCPSAVLQRLDRLVEPLRK 1152 (1233)
T ss_pred ccchHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHhhcch-hhHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence 467799999999999998653 2222222222111111 134444444556677777777666667777766554
No 52
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.64 E-value=0.0033 Score=65.86 Aligned_cols=225 Identities=16% Similarity=0.236 Sum_probs=143.8
Q ss_pred HHHhhhC-CCChHHHHHHHHHHHHHH--hhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHH
Q 002971 85 PLQRCLK-DDDPYVRKTAAICVAKLY--DINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSH 161 (862)
Q Consensus 85 ~v~~~l~-d~~~yVRk~A~~~l~kl~--~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~ 161 (862)
.+..+|. ..+|+++++|..++...- ..+.+.+.+.+-++.+.++|+++++.|...|+.++..++.... ....+..
T Consensus 16 ~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e--n~~~Ik~ 93 (254)
T PF04826_consen 16 KLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE--NQEQIKM 93 (254)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh--hHHHHHH
Confidence 3455555 478999999999998863 3345667777889999999999999999999999987765432 1223334
Q ss_pred HHHHHHHHhcc--CChhHHHHHHHHHhhcccccHH--HHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHH
Q 002971 162 TLSKLLTALNE--CTEWGQVFILDALSRYKAADAR--EAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRN 237 (862)
Q Consensus 162 ~~~~Ll~~l~~--~~~w~q~~iL~~L~~~~~~~~~--~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~ 237 (862)
.+.++|+.... ++...|..-|++|..+...+.. .....+..+..++.+.+.-+...+.++++++. .++...+.
T Consensus 94 ~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS---~np~~~~~ 170 (254)
T PF04826_consen 94 YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS---ENPDMTRE 170 (254)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc---cCHHHHHH
Confidence 56666665433 3567899999999988654321 12233555667888888899999999999874 46776665
Q ss_pred HHH-hcccchhhcccC--ChhHHHHHHHHHHHHHhhC-hh--hhhccceEEEecCCCcHHHHHHHHHHHHHhcCcCcHHH
Q 002971 238 LCK-KMAPPLVTLLSA--EPEIQYVALRNINLIVQRR-PT--ILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQ 311 (862)
Q Consensus 238 ~~~-~~~~~L~~lls~--~~~iry~aL~~l~~i~~~~-p~--~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~ 311 (862)
+.. ++...++.|+.+ +.++-.-+|.-+..|.... ++ .+.. -.++.+ -|+.+..+ .+.
T Consensus 171 Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~------~~~~~~---------~L~~~~~e--~~~ 233 (254)
T PF04826_consen 171 LLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQ------DDFSED---------SLFSLFGE--SSQ 233 (254)
T ss_pred HHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceecc------ccCCch---------hHHHHHcc--HHH
Confidence 432 344456666643 3456666666666654321 11 1110 011111 12222222 456
Q ss_pred HHHHHHHhhhhccHHHHHHH
Q 002971 312 VLLEFKEYATEVDVDFVRKA 331 (862)
Q Consensus 312 Iv~eL~~y~~~~d~~~~~~~ 331 (862)
..++|..-+...|++++.++
T Consensus 234 ~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 234 LAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred HHHHHHHHHcCCCHHHhhhc
Confidence 77777776677888887764
No 53
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.027 Score=64.09 Aligned_cols=266 Identities=15% Similarity=0.146 Sum_probs=144.6
Q ss_pred CCCCCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCC---CcHHHHHHHHHHhhcCCCCHHH----HhHHHHH----h
Q 002971 2 TVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQ---PDLAILAVNTFVKDSQDPNPLI----RALAVRT----M 70 (862)
Q Consensus 2 t~G~dvs~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~---~el~~L~intl~kDl~~~n~~i----r~lALr~----l 70 (862)
..|++.+.......+++.+.++..++=+--.+-.+.+.. .+.-...+.++.+-..|.+... .++|..+ |
T Consensus 127 ~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~L 206 (569)
T KOG1242|consen 127 SKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNL 206 (569)
T ss_pred hhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhc
Confidence 356777778888888888887776543322222222221 1111233445555555554433 2333333 3
Q ss_pred cCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhc-cccccc-------------------------------
Q 002971 71 GCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN-AELVED------------------------------- 118 (862)
Q Consensus 71 ~~i~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~-p~~~~~------------------------------- 118 (862)
|.-..|.+++ +.|.|..+..|..++||..|..|+--+.+.- +.-++.
T Consensus 207 g~~~EPyiv~-~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~a 285 (569)
T KOG1242|consen 207 GPPFEPYIVP-ILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCA 285 (569)
T ss_pred CCCCCchHHh-hHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence 3333344443 4677888889999999999998887666532 222221
Q ss_pred --------cchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhh-cc
Q 002971 119 --------RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSR-YK 189 (862)
Q Consensus 119 --------~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~-~~ 189 (862)
.++++.+.+.|.|+++.|.-++..++..++.--.. ..+.+.++.|++++.+++....-.+-.+.+. |.
T Consensus 286 p~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN---~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV 362 (569)
T KOG1242|consen 286 PKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN---PDIQKIIPTLLDALADPSCYTPECLDSLGATTFV 362 (569)
T ss_pred hHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHhcCcccchHHHHHhhcceeee
Confidence 23455555666666666666666666555432110 1133455666666665553333222222211 11
Q ss_pred c-ccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHH
Q 002971 190 A-ADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLI 267 (862)
Q Consensus 190 ~-~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i 267 (862)
. -++....-++..+..-+..++....-.++..+-++...++++.-+..+...+.|.|-.-+ ...||+|+++.+.+..+
T Consensus 363 ~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l 442 (569)
T KOG1242|consen 363 AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGAL 442 (569)
T ss_pred eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHH
Confidence 0 011222233444444555666666677777776665445566655544445555554444 34699999999999888
Q ss_pred HhhC
Q 002971 268 VQRR 271 (862)
Q Consensus 268 ~~~~ 271 (862)
..+.
T Consensus 443 ~e~~ 446 (569)
T KOG1242|consen 443 LERL 446 (569)
T ss_pred HHHH
Confidence 7654
No 54
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=0.051 Score=67.37 Aligned_cols=442 Identities=13% Similarity=0.151 Sum_probs=243.5
Q ss_pred chHHHhHhccCCCcchHHHHHHHH---HHhcCCCCcHHHHHH----HHHHhhcCCCCHHHHhHHHHHhcCC---Ch----
Q 002971 10 LFTDVVNCMQTENLELKKLVYLYL---INYAKSQPDLAILAV----NTFVKDSQDPNPLIRALAVRTMGCI---RV---- 75 (862)
Q Consensus 10 lf~~vv~l~~s~~~~~Kkl~Yl~l---~~~~~~~~el~~L~i----ntl~kDl~~~n~~ir~lALr~l~~i---~~---- 75 (862)
+.-....++-|.+...|+-+.+.+ ..|...+|+..+ .. ..|..=|.|.|++++-.|-|-||-+ ++
T Consensus 819 ~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l-~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k 897 (1702)
T KOG0915|consen 819 ILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVL-MLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLK 897 (1702)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhh-ccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhH
Confidence 334445678899999999887554 445555665322 22 4466677899999999999988831 11
Q ss_pred ---------------------------------------------hhhH--------HHHHHHHHhhhCC-CChHHHHHH
Q 002971 76 ---------------------------------------------DKIT--------EYLCDPLQRCLKD-DDPYVRKTA 101 (862)
Q Consensus 76 ---------------------------------------------~~~~--------~~l~~~v~~~l~d-~~~yVRk~A 101 (862)
.|++ ++++.--.++.+| ..+.=||=|
T Consensus 898 ~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~Ga 977 (1702)
T KOG0915|consen 898 KSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGA 977 (1702)
T ss_pred HHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccch
Confidence 1111 2334444566666 566779999
Q ss_pred HHHHHHHHhhccccccc--cchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhc---cCChh
Q 002971 102 AICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALN---ECTEW 176 (862)
Q Consensus 102 ~~~l~kl~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~---~~~~w 176 (862)
|.++..+....-+.++. ..++|+|+.-=-|.|+.|..+-......+..+ ++. .....+..+++-|- .+.+|
T Consensus 978 AfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D-~k~---~vd~y~neIl~eLL~~lt~kew 1053 (1702)
T KOG0915|consen 978 AFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITD-SKK---VVDEYLNEILDELLVNLTSKEW 1053 (1702)
T ss_pred hhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccC-hHH---HHHHHHHHHHHHHHHhccchhH
Confidence 99999999877665543 13567776666799999987766655555443 221 11222333333321 36788
Q ss_pred HH-----HHHHHHHhhcccccHHHHHHHHHHHHHhhc---CCChHHHHHHH-------HHHHHhhhccCChHHHHHHHHh
Q 002971 177 GQ-----VFILDALSRYKAADAREAENIVERVTPRLQ---HANCAVVLSAV-------KMILQQMELITSTDVVRNLCKK 241 (862)
Q Consensus 177 ~q-----~~iL~~L~~~~~~~~~~~~~il~~v~~~l~---~~n~aV~~eai-------~~i~~~~~~~~~~~~~~~~~~~ 241 (862)
-. ..+.++|+. +..++..+++.+.-...++ ..-.+|.-.|- +++..+.+. .+...-++....
T Consensus 1054 RVReasclAL~dLl~g--~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~-~~~~~~~~~l~~ 1130 (1702)
T KOG0915|consen 1054 RVREASCLALADLLQG--RPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDV-TNGAKGKEALDI 1130 (1702)
T ss_pred HHHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-CCcccHHHHHHH
Confidence 43 334555543 2222223332222222221 11123332221 222222221 122222333334
Q ss_pred cccchh--hcccCChhHHHHHHHHHHHHHhhChhhhhccceE-EEecCCCcHHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q 002971 242 MAPPLV--TLLSAEPEIQYVALRNINLIVQRRPTILAHEIKV-FFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKE 318 (862)
Q Consensus 242 ~~~~L~--~lls~~~~iry~aL~~l~~i~~~~p~~~~~~~~~-~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~ 318 (862)
+.|.|. ..+|+-+++|-+++.++..|+...+..+.+|... +.|+ ... -..+=.++ +.
T Consensus 1131 iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~l---------------l~~-~s~lE~~v----Ln 1190 (1702)
T KOG0915|consen 1131 ILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLL---------------LNA-YSELEPQV----LN 1190 (1702)
T ss_pred HHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHH---------------HHH-ccccchHH----HH
Confidence 555544 2456778999999999999999999988887641 1111 111 11122222 23
Q ss_pred hhhhccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCcccHHHHHHHHHHhhccCC
Q 002971 319 YATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLD 398 (862)
Q Consensus 319 y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~ 398 (862)
|+...-.....+++.....=+.|-. -.++++-+++..-+..+-.|.+-++.+++|..-.+-.
T Consensus 1191 Yls~r~~~~e~ealDt~R~s~akss----pmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~T-------------- 1252 (1702)
T KOG0915|consen 1191 YLSLRLINIETEALDTLRASAAKSS----PMMETINKCINYIDISVLEELIPRLTELVRGSVGLGT-------------- 1252 (1702)
T ss_pred HHHHhhhhhHHHHHHHHHHhhhcCC----cHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCc--------------
Confidence 4332224444555554443333322 2356666666666666666777777777665322110
Q ss_pred chHHHHHHHHHHhhccccc-CCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcccCCCChH
Q 002971 399 EPEAKASMIWIIGEYAERI-DNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPD 477 (862)
Q Consensus 399 ~~~~~~~~~wilGEy~~~i-~~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~~~~~~~~~i~~~l~~~~~~s~~~d 477 (862)
...+-..++-+.-.|+..+ +....+++.++..+.+-++.+|-+.-.|..+++.-..+..++..+..++.....+..++-
T Consensus 1253 kvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~ 1332 (1702)
T KOG0915|consen 1253 KVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLK 1332 (1702)
T ss_pred chhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCcc
Confidence 0011111222333455433 446789999999999999999999999999998765443478888888876543322222
Q ss_pred HHHHHHHHHHHhcCCHHHHHH
Q 002971 478 LRDRAYIYWRLLSTDPEAAKD 498 (862)
Q Consensus 478 vrdRA~~y~~ll~~~~~~~~~ 498 (862)
+-++.-...+.++..+.++.
T Consensus 1333 -siscatis~Ian~s~e~Lkn 1352 (1702)
T KOG0915|consen 1333 -SISCATISNIANYSQEMLKN 1352 (1702)
T ss_pred -chhHHHHHHHHHhhHHHHHh
Confidence 33333333355554444433
No 55
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.28 Score=56.59 Aligned_cols=349 Identities=16% Similarity=0.229 Sum_probs=189.4
Q ss_pred HHHHHHHHHhcCCCCcHHHH-HHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHH
Q 002971 27 KLVYLYLINYAKSQPDLAIL-AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICV 105 (862)
Q Consensus 27 kl~Yl~l~~~~~~~~el~~L-~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l 105 (862)
||.|+|+.- .+=|...| ++| |.+.-.-+.-.|==+++..|-+ .+.++...++..|++-|.+.+|.----|..|+
T Consensus 61 KLlyI~llg---~dIdFGhmEaV~-LLss~kysEKqIGYl~is~L~n-~n~dl~klvin~iknDL~srn~~fv~LAL~~I 135 (938)
T KOG1077|consen 61 KLLYIYLLG---YDIDFGHMEAVN-LLSSNKYSEKQIGYLFISLLLN-ENSDLMKLVINSIKNDLSSRNPTFVCLALHCI 135 (938)
T ss_pred HHHHHHHhc---CccccchHHHHH-HhhcCCccHHHHhHHHHHHHHh-cchHHHHHHHHHHHhhhhcCCcHHHHHHHHHH
Confidence 455666543 22233333 333 2222233334454455555544 35788888999999999999998888888888
Q ss_pred HHHHhhccccccccchHHHHHHhhcC--CChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChh----HHH
Q 002971 106 AKLYDINAELVEDRGFLESLKDLISD--NNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEW----GQV 179 (862)
Q Consensus 106 ~kl~~~~p~~~~~~~~~~~l~~lL~d--~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w----~q~ 179 (862)
..+-.. |..+ .|.+.+.++|.. ....|.-.|..+|..+-+..|+.. .. ...+.+++..|.|.+ . ..+
T Consensus 136 ~niG~r--e~~e--a~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~-~~-~~W~~riv~LL~D~~-~gv~ta~~ 208 (938)
T KOG1077|consen 136 ANIGSR--EMAE--AFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLV-NP-GEWAQRIVHLLDDQH-MGVVTAAT 208 (938)
T ss_pred HhhccH--hHHH--HhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcccc-Ch-hhHHHHHHHHhCccc-cceeeehH
Confidence 877543 3333 377788888864 345555444444445555554321 10 123556666665543 2 235
Q ss_pred HHHHHHhhcccccHHHH-----HHHHHHHHH---hh------cCCChHHHHHHHHHHHHhhhccCChHHHHHHHHhcccc
Q 002971 180 FILDALSRYKAADAREA-----ENIVERVTP---RL------QHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPP 245 (862)
Q Consensus 180 ~iL~~L~~~~~~~~~~~-----~~il~~v~~---~l------~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~ 245 (862)
.++.+|.++.|.+-... ..+.+.+.. -+ .-.+|=.....++++..+ +...++....+ +...
T Consensus 209 sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~-p~~~D~~~r~~----l~ev 283 (938)
T KOG1077|consen 209 SLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY-PTPEDPSTRAR----LNEV 283 (938)
T ss_pred HHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC-CCCCCchHHHH----HHHH
Confidence 66777776665432111 111111110 00 011222223334444333 32223322221 1122
Q ss_pred hhhcccC-----------ChhHHHHHHH-HHHHHHhh--ChhhhhccceEE-EecCCCcHHHHHHHHHHHHHhcCcCcHH
Q 002971 246 LVTLLSA-----------EPEIQYVALR-NINLIVQR--RPTILAHEIKVF-FCKYNDPIYVKMEKLEIMIKLASDRNID 310 (862)
Q Consensus 246 L~~lls~-----------~~~iry~aL~-~l~~i~~~--~p~~~~~~~~~~-~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~ 310 (862)
|-++|++ +.|.+-.+|- +|..+... .|+++.+....+ ..+.+..+.||-.+||-+..||..+=..
T Consensus 284 l~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~ 363 (938)
T KOG1077|consen 284 LERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSI 363 (938)
T ss_pred HHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchH
Confidence 2222211 1233444432 23332222 345554433221 1234556789999999999999987666
Q ss_pred HHHHHHHH----hhh-hccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCc---cc
Q 002971 311 QVLLEFKE----YAT-EVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYP---NT 382 (862)
Q Consensus 311 ~Iv~eL~~----y~~-~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p---~~ 382 (862)
+.++.=++ -+. +.|..+|++++.-+..++.. +.++.+|+-|++.|..+...+.+|.+.-+.-+-.+|. +.
T Consensus 364 davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~W 441 (938)
T KOG1077|consen 364 DAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSW 441 (938)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhch--hhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcch
Confidence 66654333 233 67999999999988777665 5678999999999999877777777766555555653 23
Q ss_pred HHHHHHHHHHhh
Q 002971 383 YESIIATLCESL 394 (862)
Q Consensus 383 ~~~~i~~L~~~l 394 (862)
+..++-+|++.-
T Consensus 442 yVdviLqLiria 453 (938)
T KOG1077|consen 442 YVDVILQLIRIA 453 (938)
T ss_pred hHHHHHHHHHHh
Confidence 444555555433
No 56
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.54 E-value=0.01 Score=69.78 Aligned_cols=290 Identities=17% Similarity=0.201 Sum_probs=188.6
Q ss_pred CCcchHHHHHHHHHHhcCCCCcHHHH-HHHHHHhhcCCCCHHHHhHHHHHhcCCCh-------hhhHHHH----------
Q 002971 21 ENLELKKLVYLYLINYAKSQPDLAIL-AVNTFVKDSQDPNPLIRALAVRTMGCIRV-------DKITEYL---------- 82 (862)
Q Consensus 21 ~~~~~Kkl~Yl~l~~~~~~~~el~~L-~intl~kDl~~~n~~ir~lALr~l~~i~~-------~~~~~~l---------- 82 (862)
.+-..|-++.|.+..+....+..... .-.++.+.++||++.+++.|--+||++.+ |.+.+.+
T Consensus 831 s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLL 910 (1233)
T KOG1824|consen 831 SSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLL 910 (1233)
T ss_pred CchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHH
Confidence 44567778888888887665331111 11256788899999999999999999875 2222211
Q ss_pred HHHHHhhh-----------------------CCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHH
Q 002971 83 CDPLQRCL-----------------------KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVAN 139 (862)
Q Consensus 83 ~~~v~~~l-----------------------~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~ 139 (862)
...++..+ .......|--.+.|++|+...+|+. +.++|+..+...++..++.
T Consensus 911 LhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epes-----LlpkL~~~~~S~a~~~rs~ 985 (1233)
T KOG1824|consen 911 LHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPES-----LLPKLKLLLRSEASNTRSS 985 (1233)
T ss_pred HHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHH-----HHHHHHHHhcCCCcchhhh
Confidence 11222222 2244567888899999999999874 6799999999999988988
Q ss_pred HHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHH
Q 002971 140 AVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAV 219 (862)
Q Consensus 140 a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai 219 (862)
++.++-.....+|.+.-.+..+.+..++..+.+++.-..-..|..+.......+.-..++++.+.|.+.+. ..|.-|-|
T Consensus 986 vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~e-TkvrkelI 1064 (1233)
T KOG1824|consen 986 VVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSE-TKVRKELI 1064 (1233)
T ss_pred hhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHh-hhhhHhhh
Confidence 88888766666676666667777888888888888777666677776665555666777788888776432 22333333
Q ss_pred HHHHHhhhccCChHHHHHHHHhcccchhhcccCChhHHHHHHHHHHHHHhhC-----hhhhhccceEEEecCCCcHHHHH
Q 002971 220 KMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRR-----PTILAHEIKVFFCKYNDPIYVKM 294 (862)
Q Consensus 220 ~~i~~~~~~~~~~~~~~~~~~~~~~~L~~lls~~~~iry~aL~~l~~i~~~~-----p~~~~~~~~~~~~l~~d~~~Ik~ 294 (862)
+.+ .++| +-.-....-++|-.|..++..+.... +.-|..|+. .--.|-.+||+
T Consensus 1065 reV------------------eMGP-FKH~VDdgLd~RKaaFEcmytLLdscld~~dit~Fl~~~~---~GL~DhydiKm 1122 (1233)
T KOG1824|consen 1065 REV------------------EMGP-FKHTVDDGLDLRKAAFECMYTLLDSCLDRLDITEFLNHVE---DGLEDHYDIKM 1122 (1233)
T ss_pred hhh------------------cccC-ccccccchHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHH---hhcchhhHHHH
Confidence 322 1222 22223445689999999998887643 222333332 22245588999
Q ss_pred HHHHHHHHhcC--cCcHHHHHHHHHHhhhh----------------ccHHHHHHHHHHHHHH
Q 002971 295 EKLEIMIKLAS--DRNIDQVLLEFKEYATE----------------VDVDFVRKAVRAIGRC 338 (862)
Q Consensus 295 ~~L~lL~~l~~--~~Nv~~Iv~eL~~y~~~----------------~d~~~~~~~i~~I~~l 338 (862)
...-+|.++++ ++-|-+-++.+.+-++. .-.+++|.+++++..+
T Consensus 1123 lt~l~l~rLa~lcPs~VlqrlD~l~EpLr~t~~~k~k~~svKqE~ek~~eLkRSAlRav~~L 1184 (1233)
T KOG1824|consen 1123 LTFLMLARLADLCPSAVLQRLDRLVEPLRKTCTLKVKANSVKQEFEKQDELKRSALRAVAAL 1184 (1233)
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhcccccchHhHhHHHHHHHHHHHHHHHHHH
Confidence 99999988876 44455555555544332 1245666666666555
No 57
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.35 Score=56.37 Aligned_cols=425 Identities=16% Similarity=0.212 Sum_probs=231.8
Q ss_pred chHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhh
Q 002971 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRC 89 (862)
Q Consensus 10 lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~ 89 (862)
+|..-+..|.|++-+++-.+--|++...++.-|+++-.-....+++. | .-...|..++ +.+.|-+.++
T Consensus 260 lfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~-p--~~~~fa~~a~---------~~v~P~Ll~~ 327 (859)
T KOG1241|consen 260 LFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLP-P--SSKYFARQAL---------QDVVPVLLEL 327 (859)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-c--hhhHHHHHHH---------hHhhHHHHHH
Confidence 45555566667777777777777777766666666655555555554 2 1112222222 2344444444
Q ss_pred hC-------CCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCC-cccccHH
Q 002971 90 LK-------DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP-IFEITSH 161 (862)
Q Consensus 90 l~-------d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~-~~~l~~~ 161 (862)
|. +.++.+-|.|-.|+.-+-+...|.+-+ ...+.+++-+...|-.=.-+|+.++..|....... ...+.+.
T Consensus 328 L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~q 406 (859)
T KOG1241|consen 328 LTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQ 406 (859)
T ss_pred HHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhh
Confidence 43 256788888888887776665554432 36688887887777766777778887776543222 3445556
Q ss_pred HHHHHHHHhcc-------CChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhcc----C
Q 002971 162 TLSKLLTALNE-------CTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELI----T 230 (862)
Q Consensus 162 ~~~~Ll~~l~~-------~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~----~ 230 (862)
.++.+++.+.| ..+|.--+|.+.+..-+- +......++..+..-| +..+-|.-.+...+..+.+.. .
T Consensus 407 alp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~-n~~~l~~~l~~l~~gL-~DePrva~N~CWAf~~Laea~~eA~~ 484 (859)
T KOG1241|consen 407 ALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAII-NQELLQSKLSALLEGL-NDEPRVASNVCWAFISLAEAAYEAAV 484 (859)
T ss_pred hhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcc-cHhhhhHHHHHHHHHh-hhCchHHHHHHHHHHHHHHHHHHhcc
Confidence 66666666554 357777777777753221 1112222333333333 334555566666665553211 0
Q ss_pred Ch---HHHHHHHHhcccchhhcc---c-CChhHHHHHHHHHHHHHhhChhhhhccceEEEecCCCcHHHHHHHHHHHHHh
Q 002971 231 ST---DVVRNLCKKMAPPLVTLL---S-AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKL 303 (862)
Q Consensus 231 ~~---~~~~~~~~~~~~~L~~ll---s-~~~~iry~aL~~l~~i~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l 303 (862)
+. +........+++.|+.-- + ++.|.|-.+.++|..|+...|+.+.+ .+....+-++.+|
T Consensus 485 s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~-------------~v~~~~l~il~kl 551 (859)
T KOG1241|consen 485 SNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYP-------------MVQKLTLVILEKL 551 (859)
T ss_pred CCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHH-------------HHHHHHHHHHHHH
Confidence 10 000111112333333222 2 46799999999999999887764332 1222222222222
Q ss_pred cCcCcHHHHHH-HHHHhhhh-ccHHHHHHHHHHHHHHHHhh----hHhHHHHHHHHHHHHhhhcc-hhHHHHHHHHHHHH
Q 002971 304 ASDRNIDQVLL-EFKEYATE-VDVDFVRKAVRAIGRCAIKL----ERAAERCISVLLELIKIKVN-YVVQEAIIVIKDIF 376 (862)
Q Consensus 304 ~~~~Nv~~Iv~-eL~~y~~~-~d~~~~~~~i~~I~~la~k~----~~~~~~~v~~ll~ll~~~~~-~v~~e~i~~l~~i~ 376 (862)
++.+. +.+.|... .-.++...+...++.+..|+ .+..+..+..+++++..+.. .+.+|+.-.+.-++
T Consensus 552 ------~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~ 625 (859)
T KOG1241|consen 552 ------DQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLA 625 (859)
T ss_pred ------HHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHH
Confidence 11111 22222111 11234444555555555554 44555666666677776433 45556655554444
Q ss_pred HhCcccHH----HHHHHHHHhhccCCchHHHHHHHHHHhhcccccC-----CHHHHHHHHhhhCCCC--CHHHHHHHHHH
Q 002971 377 RRYPNTYE----SIIATLCESLDTLDEPEAKASMIWIIGEYAERID-----NADELLESFLESFPEE--PAQVQLQLLTA 445 (862)
Q Consensus 377 ~~~p~~~~----~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~-----~~~~~l~~~~~~~~~e--~~~v~~~iLta 445 (862)
..-...+. ...+.|..-|...++..+..+++-++|.-+.-.. -+.+++..+++.+..+ +..||-+||++
T Consensus 626 ~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~ 705 (859)
T KOG1241|consen 626 ESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSV 705 (859)
T ss_pred HHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHH
Confidence 33222222 2233344444445566677778888888766443 2567888888877654 57899999999
Q ss_pred HHHHhhcCCCCChH---HHHHHHHHhc
Q 002971 446 TVKLFLKKPTEGPQ---QMIQVVLNNA 469 (862)
Q Consensus 446 ~~Kl~~~~~~~~~~---~~i~~~l~~~ 469 (862)
+.-++.....+ .. +++..+|+.+
T Consensus 706 FgDIAlaIg~~-F~~Yl~~vm~llq~a 731 (859)
T KOG1241|consen 706 FGDIALAIGAD-FEPYLEMVMPLLQQA 731 (859)
T ss_pred HHHHHHHHHHh-HHHHHHHHHHHHHHH
Confidence 99998865432 33 3445555544
No 58
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.48 E-value=0.2 Score=56.72 Aligned_cols=309 Identities=15% Similarity=0.165 Sum_probs=151.2
Q ss_pred CCCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCC---CH-HHHh------------HHH
Q 002971 4 GKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDP---NP-LIRA------------LAV 67 (862)
Q Consensus 4 G~dvs~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~---n~-~ir~------------lAL 67 (862)
|+|.....--+...+.|+|-+.||..-+....+.+...+- .-..+|=-++ .+ ..|- ++-
T Consensus 436 ~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~t-----p~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~tt 510 (975)
T COG5181 436 CHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDT-----PWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTT 510 (975)
T ss_pred hhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCC-----HHHHHHhhcHHhhchHHHhhhcccccccceeehhH
Confidence 4444444444456899999999999999999988766441 1111111111 01 1111 222
Q ss_pred HHhcCCC-hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccccccc----chHHHHHHhhcCCC--hhHHHHH
Q 002971 68 RTMGCIR-VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDR----GFLESLKDLISDNN--PMVVANA 140 (862)
Q Consensus 68 r~l~~i~-~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~----~~~~~l~~lL~d~d--~~V~~~a 140 (862)
-.++... .+ .+..-|..-++|...--||-++.++-|++..-|-.--++ .+.+.+...+.+.+ .+++..+
T Consensus 511 vilAk~~g~~----~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~ 586 (975)
T COG5181 511 VILAKMGGDP----RVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPC 586 (975)
T ss_pred HHHHHHcCCh----HHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEec
Confidence 2223222 33 455556777788554459999999999998655432221 23333333443322 3333322
Q ss_pred HHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhccc-----ccHHHHHHHHHHHHHhhcCCChHHH
Q 002971 141 VAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKA-----ADAREAENIVERVTPRLQHANCAVV 215 (862)
Q Consensus 141 ~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~-----~~~~~~~~il~~v~~~l~~~n~aV~ 215 (862)
+.+..--..-.+ ......++..+++.|+...|-..+...++...+.+ .+.++...+=+.+...+-...+-|+
T Consensus 587 f~tv~vsl~~r~---kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvL 663 (975)
T COG5181 587 FSTVLVSLEFRG---KPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVL 663 (975)
T ss_pred ccceeeehhhcc---CcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHH
Confidence 222111000012 22344567777888877777766655555543332 1122222222223344444444444
Q ss_pred ---HHHHHHHHHhhhccCChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhChhhhhccceEEEecCCCcHH
Q 002971 216 ---LSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIY 291 (862)
Q Consensus 216 ---~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~~~~~~~~~~~~l~~d~~~ 291 (862)
+.|+.+|......-+-..-++ .+.|.|.-+| +++.-+.--.+..+..|+...|+.+.
T Consensus 664 gsil~Ai~~I~sv~~~~~mqpPi~----~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~--------------- 724 (975)
T COG5181 664 GSILKAICSIYSVHRFRSMQPPIS----GILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIG--------------- 724 (975)
T ss_pred HHHHHHHHHHhhhhcccccCCchh----hccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCC---------------
Confidence 444444443211000000112 2455555555 45556666677777777777775321
Q ss_pred HHHHHHHHHHHhcCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhh
Q 002971 292 VKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKI 359 (862)
Q Consensus 292 Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~ 359 (862)
..-+-.|.=||.+-+.+-+.++||.+....|-++.-..+ +..+++|++-|+.
T Consensus 725 --------------~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP--qdvL~~LlnnLkv 776 (975)
T COG5181 725 --------------VREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP--QDVLDILLNNLKV 776 (975)
T ss_pred --------------HHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH--HHHHHHHHhcchH
Confidence 122334444444555555556666666666655554432 2445555554443
No 59
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.45 E-value=0.03 Score=66.74 Aligned_cols=364 Identities=18% Similarity=0.229 Sum_probs=201.4
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhccccc--HHH--HHHH
Q 002971 124 SLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAAD--ARE--AENI 199 (862)
Q Consensus 124 ~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~--~~~--~~~i 199 (862)
+++.++...+ .++..|+.+|..++.+......-.....+..|++.|..-++-+.+..+.+|.++.-.. ... ...+
T Consensus 254 k~~~l~~kQe-qLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~gi 332 (708)
T PF05804_consen 254 KLQTLIRKQE-QLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGI 332 (708)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence 4445555544 5566778888888876421111122345667777777777778888888888765332 211 1246
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHHH-hcccchhhcccCChhHHHHHHHHHHHHHhhC--hhhhh
Q 002971 200 VERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLSAEPEIQYVALRNINLIVQRR--PTILA 276 (862)
Q Consensus 200 l~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~-~~~~~L~~lls~~~~iry~aL~~l~~i~~~~--p~~~~ 276 (862)
++.+...+++.+.-++-.++++++++. -+++....+.. .++|.|+.++. +++.+.+++..|..++... ...|.
T Consensus 333 V~kL~kLl~s~~~~l~~~aLrlL~NLS---fd~~~R~~mV~~GlIPkLv~LL~-d~~~~~val~iLy~LS~dd~~r~~f~ 408 (708)
T PF05804_consen 333 VEKLLKLLPSENEDLVNVALRLLFNLS---FDPELRSQMVSLGLIPKLVELLK-DPNFREVALKILYNLSMDDEARSMFA 408 (708)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhC---cCHHHHHHHHHCCCcHHHHHHhC-CCchHHHHHHHHHHhccCHhhHHHHh
Confidence 778888899988888899999999873 24554443322 46677888886 4578888999888887642 22332
Q ss_pred --ccce-EEEe-cCCCcHHHHHHHHHHHHHhc-CcCcHHHHHH-----HHHHhhhhccHHHHHHHHHHHHHHHHhhhHh-
Q 002971 277 --HEIK-VFFC-KYNDPIYVKMEKLEIMIKLA-SDRNIDQVLL-----EFKEYATEVDVDFVRKAVRAIGRCAIKLERA- 345 (862)
Q Consensus 277 --~~~~-~~~~-l~~d~~~Ik~~~L~lL~~l~-~~~Nv~~Iv~-----eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~- 345 (862)
..+. +..+ +...+..+....+-+++.++ ++.|++.+++ .|.+.+...-+.+--++++ .++..-++.
T Consensus 409 ~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIR---NiS~h~~~~k 485 (708)
T PF05804_consen 409 YTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIR---NISQHDGPLK 485 (708)
T ss_pred hcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHH---HHHhcCchHH
Confidence 1222 1111 22344556666777777765 5677776654 2333322211122223333 344432222
Q ss_pred --HHHHHHHHHHHHhhh-cchhHHHHHHHHHHHHHhCcccHH-----HHHHHHHHhhc-cCCchHH-HHHHHHHHhhccc
Q 002971 346 --AERCISVLLELIKIK-VNYVVQEAIIVIKDIFRRYPNTYE-----SIIATLCESLD-TLDEPEA-KASMIWIIGEYAE 415 (862)
Q Consensus 346 --~~~~v~~ll~ll~~~-~~~v~~e~i~~l~~i~~~~p~~~~-----~~i~~L~~~l~-~~~~~~~-~~~~~wilGEy~~ 415 (862)
...||.-+++++... ++...-|++-.+.++-..+.+... ..++.|.+.+. ....++. .+++ -++|--+.
T Consensus 486 ~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~V-i~~gtla~ 564 (708)
T PF05804_consen 486 ELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVV-ILLGTLAS 564 (708)
T ss_pred HHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHH-HHHHHHHC
Confidence 223344444555443 234455566566555322212111 23444444443 1223444 4444 44554432
Q ss_pred ccCCH-----HHHHHHHhhhC--CCCCHHHHHHHHHHHHHHhhcCCCC----ChHHHHHHHHHhcccCCCChHHHHHHHH
Q 002971 416 RIDNA-----DELLESFLESF--PEEPAQVQLQLLTATVKLFLKKPTE----GPQQMIQVVLNNATVETDNPDLRDRAYI 484 (862)
Q Consensus 416 ~i~~~-----~~~l~~~~~~~--~~e~~~v~~~iLta~~Kl~~~~~~~----~~~~~i~~~l~~~~~~s~~~dvrdRA~~ 484 (862)
.-.-+ ..+++.+++-| ..|+.+.-+|++-++-++....+.- .-.+.+.+++... ++.|++||.-|-.
T Consensus 565 d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~--~d~N~~ir~~~d~ 642 (708)
T PF05804_consen 565 DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLM--HDKNAEIRKVCDN 642 (708)
T ss_pred CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHh--cCCCHHHHHHHHH
Confidence 11101 12333343322 3578899999999999998875420 0013456777763 5689999999888
Q ss_pred HHHHhcC-CHHHHHH
Q 002971 485 YWRLLST-DPEAAKD 498 (862)
Q Consensus 485 y~~ll~~-~~~~~~~ 498 (862)
.+-++.. +.+-+++
T Consensus 643 ~Ldii~e~d~~w~~r 657 (708)
T PF05804_consen 643 ALDIIAEYDEEWAER 657 (708)
T ss_pred HHHHHHHhCHHHHHH
Confidence 8777643 4444443
No 60
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.43 E-value=0.0072 Score=67.86 Aligned_cols=210 Identities=14% Similarity=0.042 Sum_probs=128.0
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHH
Q 002971 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (862)
Q Consensus 47 ~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~ 126 (862)
++..+.+-|.|.++.+|.-|.+.|+.|+.+...+. +.+.+.|.+|.||..++-++. ....+ -.+.+.
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~----L~~~L~~~~p~vR~aal~al~-~r~~~--------~~~~L~ 153 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPW----LEPLLAASEPPGRAIGLAALG-AHRHD--------PGPALE 153 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHH----HHHHhcCCChHHHHHHHHHHH-hhccC--------hHHHHH
Confidence 48888999999999999999999999999977766 567778999999998874444 32222 236788
Q ss_pred HhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Q 002971 127 DLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPR 206 (862)
Q Consensus 127 ~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~ 206 (862)
.+|+|.|+.|...|+.++..+.... ....|...+.+.++=...-.+.-+..+.. + ++ .+.+...
T Consensus 154 ~~L~d~d~~Vra~A~raLG~l~~~~----------a~~~L~~al~d~~~~VR~aA~~al~~lG~--~-~A---~~~l~~~ 217 (410)
T TIGR02270 154 AALTHEDALVRAAALRALGELPRRL----------SESTLRLYLRDSDPEVRFAALEAGLLAGS--R-LA---WGVCRRF 217 (410)
T ss_pred HHhcCCCHHHHHHHHHHHHhhcccc----------chHHHHHHHcCCCHHHHHHHHHHHHHcCC--H-hH---HHHHHHH
Confidence 8899999999999999999886433 23445555666666655555555555532 1 22 2222322
Q ss_pred hcCCChHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhcccCChhHHHHHHHHHHHHHhhChhhhhccceEEEecC
Q 002971 207 LQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKY 286 (862)
Q Consensus 207 l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~lls~~~~iry~aL~~l~~i~~~~p~~~~~~~~~~~~l~ 286 (862)
....+..+...+. .++.+. .++..+ ..|..++. ++++|..++..+..+.. |..+..-+. .+
T Consensus 218 ~~~~g~~~~~~l~-~~lal~---~~~~a~--------~~L~~ll~-d~~vr~~a~~AlG~lg~--p~av~~L~~---~l- 278 (410)
T TIGR02270 218 QVLEGGPHRQRLL-VLLAVA---GGPDAQ--------AWLRELLQ-AAATRREALRAVGLVGD--VEAAPWCLE---AM- 278 (410)
T ss_pred HhccCccHHHHHH-HHHHhC---CchhHH--------HHHHHHhc-ChhhHHHHHHHHHHcCC--cchHHHHHH---Hh-
Confidence 2233333322222 222221 233222 22333433 34578888888877653 332221111 11
Q ss_pred CCcHHHHHHHHHHHHHhcC
Q 002971 287 NDPIYVKMEKLEIMIKLAS 305 (862)
Q Consensus 287 ~d~~~Ik~~~L~lL~~l~~ 305 (862)
+ +.++++.+-+.+-+|+-
T Consensus 279 ~-d~~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 279 R-EPPWARLAGEAFSLITG 296 (410)
T ss_pred c-CcHHHHHHHHHHHHhhC
Confidence 2 22388888888777766
No 61
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.43 E-value=0.0008 Score=80.71 Aligned_cols=158 Identities=22% Similarity=0.276 Sum_probs=122.1
Q ss_pred ccchHHHhHhc----cCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcC-CCCHHHHhHHHHHhcCCC--hhhhHH
Q 002971 8 SSLFTDVVNCM----QTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQ-DPNPLIRALAVRTMGCIR--VDKITE 80 (862)
Q Consensus 8 s~lf~~vv~l~----~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~-~~n~~ir~lALr~l~~i~--~~~~~~ 80 (862)
+.+-|-|++.+ -.+|.++..-++|++..+.--..+..--.-..|-.=++ +|+|.||+.+.-.+|-+. -|.+++
T Consensus 918 g~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie 997 (1251)
T KOG0414|consen 918 GRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIE 997 (1251)
T ss_pred HHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccc
Confidence 34556666666 45678999999999998876665544434444444454 899999999999999865 588999
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccH
Q 002971 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (862)
Q Consensus 81 ~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~ 160 (862)
.-.+.+.+-|.|.++-|||+|++.+.++... +.++-.|.+..+..+|.|.|+.+..-|=..+.|++.+. ..++.++|
T Consensus 998 ~~T~~Ly~rL~D~~~~vRkta~lvlshLILn--dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~-n~iynlLP 1074 (1251)
T KOG0414|consen 998 PWTEHLYRRLRDESPSVRKTALLVLSHLILN--DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG-NTIYNLLP 1074 (1251)
T ss_pred hhhHHHHHHhcCccHHHHHHHHHHHHHHHHh--hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc-cchhhhch
Confidence 9999999999999999999999999998764 35555578899999999999998887777888888764 45566666
Q ss_pred HHHHHHHH
Q 002971 161 HTLSKLLT 168 (862)
Q Consensus 161 ~~~~~Ll~ 168 (862)
.++.+|-+
T Consensus 1075 dil~~Ls~ 1082 (1251)
T KOG0414|consen 1075 DILSRLSN 1082 (1251)
T ss_pred HHHHhhcc
Confidence 66555533
No 62
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.49 Score=55.24 Aligned_cols=410 Identities=17% Similarity=0.188 Sum_probs=230.4
Q ss_pred CCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhH----HHHHHHHHhhhCCCCh-HHHHHHHHHHHHHHh-h
Q 002971 38 KSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKIT----EYLCDPLQRCLKDDDP-YVRKTAAICVAKLYD-I 111 (862)
Q Consensus 38 ~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~----~~l~~~v~~~l~d~~~-yVRk~A~~~l~kl~~-~ 111 (862)
...+|.--.+=|-+.+-|.++.|.++..|-.+++.|..-|+- +.++..++....+..+ .||..++.++..+.+ .
T Consensus 82 ~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i 161 (859)
T KOG1241|consen 82 QLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDI 161 (859)
T ss_pred cCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccC
Confidence 344555556667777788888888888888887777766655 4555555565556444 599999999998886 5
Q ss_pred ccccccc---cchHHHHHHhhc-CCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHH----HhccCChhHHHHHHH
Q 002971 112 NAELVED---RGFLESLKDLIS-DNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLT----ALNECTEWGQVFILD 183 (862)
Q Consensus 112 ~p~~~~~---~~~~~~l~~lL~-d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~----~l~~~~~w~q~~iL~ 183 (862)
+|+.+.. .-+...+.-+.. +++..|..+|+.+|+.-..-.. ..|.-- .--..+.. .=...+.-.|+..+.
T Consensus 162 ~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~-~nF~~E-~ern~iMqvvcEatq~~d~~i~~aa~~ 239 (859)
T KOG1241|consen 162 DPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTK-ANFNNE-MERNYIMQVVCEATQSPDEEIQVAAFQ 239 (859)
T ss_pred CHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHH-HhhccH-hhhceeeeeeeecccCCcHHHHHHHHH
Confidence 7885542 112233344443 5788899999888875321100 000000 00001111 111124446666666
Q ss_pred HHhhcccccHHHHH-----HHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhcc--cCChhH
Q 002971 184 ALSRYKAADAREAE-----NIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL--SAEPEI 256 (862)
Q Consensus 184 ~L~~~~~~~~~~~~-----~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~ll--s~~~~i 256 (862)
+|.+.-.-.-+-.. .++..-...+++.|..|.+.++..-....+ +.-+..-.+. ... ...|--
T Consensus 240 ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWstice--EEiD~~~e~~--------e~~d~~~~p~~ 309 (859)
T KOG1241|consen 240 CLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICE--EEIDLAIEYG--------EAVDQGLPPSS 309 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH--HHHHHHHHHH--------HHhhcCCCchh
Confidence 66543211111111 133334556788899999999877654321 0111111111 111 122334
Q ss_pred HHHHHHHHHHHHhhChhhhhccceEEEecCCCcHHHHHHH---HHHHHHhcCcCcHHHHHHHHHHhhhhccHHHHHHHHH
Q 002971 257 QYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEK---LEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVR 333 (862)
Q Consensus 257 ry~aL~~l~~i~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~---L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~ 333 (862)
.|.+..++..++..--+++.++- .+-++||.++.+-| |.++...|..+=+..++.-+.+.++..|-..|..++-
T Consensus 310 ~~fa~~a~~~v~P~Ll~~L~kqd---e~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavm 386 (859)
T KOG1241|consen 310 KYFARQALQDVVPVLLELLTKQD---EDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVM 386 (859)
T ss_pred hHHHHHHHhHhhHHHHHHHHhCC---CCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHH
Confidence 55555555554422112222211 12346667776654 6677777777777777777777888889889998888
Q ss_pred HHHHHHH-----hhhHhHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCcccH------HHHHHHHHHhhccCCchHH
Q 002971 334 AIGRCAI-----KLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTY------ESIIATLCESLDTLDEPEA 402 (862)
Q Consensus 334 ~I~~la~-----k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~------~~~i~~L~~~l~~~~~~~~ 402 (862)
+.|.+-+ +.-+.....+..++.++.+..-.+.+.+...+-+|....|+.. ...+..+.+-+. ++|..
T Consensus 387 AFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~--DePrv 464 (859)
T KOG1241|consen 387 AFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN--DEPRV 464 (859)
T ss_pred HHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh--hCchH
Confidence 8876533 3334455667888888886666666555445555655555421 123444444444 36887
Q ss_pred HHHHHHHHhhcccccC-----C---------HHHHHHHHhhhCCC---CCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 002971 403 KASMIWIIGEYAERID-----N---------ADELLESFLESFPE---EPAQVQLQLLTATVKLFLKKPTEGPQQMIQVV 465 (862)
Q Consensus 403 ~~~~~wilGEy~~~i~-----~---------~~~~l~~~~~~~~~---e~~~v~~~iLta~~Kl~~~~~~~~~~~~i~~~ 465 (862)
-..++|-+--.++.+. + -++++..+++.=.. .....|...-.|++-+....|.. +.++++++
T Consensus 465 a~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~-vy~~v~~~ 543 (859)
T KOG1241|consen 465 ASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDD-VYPMVQKL 543 (859)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHH-HHHHHHHH
Confidence 7778887654443221 1 12444444432111 34667888888888888877764 66666554
No 63
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.38 E-value=0.78 Score=57.51 Aligned_cols=466 Identities=12% Similarity=0.154 Sum_probs=249.8
Q ss_pred hHHHhHhccCCCcchHHHHHHHHHHhcCCCCcH-----HHHHHHHHHhhcCCCCHHHHhHHHHHhcCC--ChhhhHHHHH
Q 002971 11 FTDVVNCMQTENLELKKLVYLYLINYAKSQPDL-----AILAVNTFVKDSQDPNPLIRALAVRTMGCI--RVDKITEYLC 83 (862)
Q Consensus 11 f~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el-----~~L~intl~kDl~~~n~~ir~lALr~l~~i--~~~~~~~~l~ 83 (862)
.-.++..+..+...+|-=+-=.++.+.+.+|.+ +.++| ..=+.|..-.||-.||--+|.. ..++.++..+
T Consensus 818 Lk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~V---h~R~~DssasVREAaldLvGrfvl~~~e~~~qyY 894 (1692)
T KOG1020|consen 818 LKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAV---HGRLNDSSASVREAALDLVGRFVLSIPELIFQYY 894 (1692)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHH---HHhhccchhHHHHHHHHHHhhhhhccHHHHHHHH
Confidence 334444555555555555555566666666542 23333 3456677899999999999964 4899999999
Q ss_pred HHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhh---cCCChhHHHHHHHHHHHHhhcCCCC--cc--
Q 002971 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLI---SDNNPMVVANAVAALAEIEENSSRP--IF-- 156 (862)
Q Consensus 84 ~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL---~d~d~~V~~~a~~~l~~i~~~~~~~--~~-- 156 (862)
..|...+.|..-.|||.|+--+..+|...|+... +.+.+.++| +|..-.|.=-+.-.+..+.-..++. ..
T Consensus 895 ~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~---i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~ 971 (1692)
T KOG1020|consen 895 DQIIERILDTGVSVRKRVIKILRDICEETPDFSK---IVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPA 971 (1692)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh---HHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHH
Confidence 9999999999999999999999999999999865 444555554 4655445544455555553222211 11
Q ss_pred --cccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccH-----HH----HHHHHHHHHHh-------------hcCCCh
Q 002971 157 --EITSHTLSKLLTALNECTEWGQVFILDALSRYKAADA-----RE----AENIVERVTPR-------------LQHANC 212 (862)
Q Consensus 157 --~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~-----~~----~~~il~~v~~~-------------l~~~n~ 212 (862)
..+.......-.+..-...|.+--+..+|..+.-... +. ....++.+..+ ....+.
T Consensus 972 ~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~ 1051 (1692)
T KOG1020|consen 972 KARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESE 1051 (1692)
T ss_pred HHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccch
Confidence 1111111111122223478888777777765542100 00 11222222222 233455
Q ss_pred HHHHHHHHHHHHhhhccCChHHHH-HHHHhcccchhhcc-cCCh--hHHHHHHHHHHHHHh---hChhhhh----ccceE
Q 002971 213 AVVLSAVKMILQQMELITSTDVVR-NLCKKMAPPLVTLL-SAEP--EIQYVALRNINLIVQ---RRPTILA----HEIKV 281 (862)
Q Consensus 213 aV~~eai~~i~~~~~~~~~~~~~~-~~~~~~~~~L~~ll-s~~~--~iry~aL~~l~~i~~---~~p~~~~----~~~~~ 281 (862)
.-+++++.++..+.. ..|.+.. ..+. ...|.++.- ++.. -.-|.++..+..... .-++.|- .++..
T Consensus 1052 ~~~~~~lstL~~Fsk--irP~Llt~khv~-tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~ 1128 (1692)
T KOG1020|consen 1052 VRLLAYLSTLFVFSK--IRPQLLTKKHVI-TLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLK 1128 (1692)
T ss_pred hHHHHHHHHHHHHHh--cCchhccHHHHH-HhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH
Confidence 777888877766532 1333322 1111 112222221 2212 233333333333332 2222221 12110
Q ss_pred EEecCCCcHHHHHHHHHHHHHhcCc--CcHHHHHHHHHHhh------hhc---c-----HHHHHHHHHHHHHHHHhh---
Q 002971 282 FFCKYNDPIYVKMEKLEIMIKLASD--RNIDQVLLEFKEYA------TEV---D-----VDFVRKAVRAIGRCAIKL--- 342 (862)
Q Consensus 282 ~~~l~~d~~~Ik~~~L~lL~~l~~~--~Nv~~Iv~eL~~y~------~~~---d-----~~~~~~~i~~I~~la~k~--- 342 (862)
... .-....-..+.-.|.++++. +|++.+-.-+..|. +.. + ...-..++-.+|.++..|
T Consensus 1129 ~i~--k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~ 1206 (1692)
T KOG1020|consen 1129 RIV--KMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFP 1206 (1692)
T ss_pred HHH--hcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCC
Confidence 000 11122334566778888884 77776655444433 222 1 122345677788887643
Q ss_pred -------------hHhHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCccc--HHHHHHHHHHhhccCCchHH-HH--
Q 002971 343 -------------ERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNT--YESIIATLCESLDTLDEPEA-KA-- 404 (862)
Q Consensus 343 -------------~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~--~~~~i~~L~~~l~~~~~~~~-~~-- 404 (862)
....+.|+..|+-+.+.....+...++..+..++-++|.. .+.+...+++.|.+...+.. +.
T Consensus 1207 ~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~~ki~~ 1286 (1692)
T KOG1020|consen 1207 KPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIKSKIQL 1286 (1692)
T ss_pred CccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHHHHHHH
Confidence 1234566666666677777778888888888888888875 23333334444443332322 11
Q ss_pred -HHHHHH------------------------hhcccccC----C------HHHHHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 002971 405 -SMIWII------------------------GEYAERID----N------ADELLESFLESFPEEPAQVQLQLLTATVKL 449 (862)
Q Consensus 405 -~~~wil------------------------GEy~~~i~----~------~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl 449 (862)
...|+. +|..+.-. + ..-+++.+++.|.+.+..+|...+. ++|+
T Consensus 1287 l~n~~~yL~eee~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aik-vl~l 1365 (1692)
T KOG1020|consen 1287 LQNLELYLLEEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIK-VLKL 1365 (1692)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHH
Confidence 112221 11111000 0 1234566667788888888877654 3444
Q ss_pred hhcCCCCChHHHHHHHHHhcccCCCChHHHHHHHHHHHHhc
Q 002971 450 FLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLS 490 (862)
Q Consensus 450 ~~~~~~~~~~~~i~~~l~~~~~~s~~~dvrdRA~~y~~ll~ 490 (862)
..+..=-.-...+.+++.+. .+...+.|.||.+.+.=+.
T Consensus 1366 iL~QGLVhP~~cvPtLIAL~--Tdp~~~~r~~Ad~LL~eid 1404 (1692)
T KOG1020|consen 1366 ILNQGLVHPVHCVPTLIALE--TDPSQAIRHVADELLKEID 1404 (1692)
T ss_pred HHHccCCCccchhhhheeec--CChHHHHHHHHHHHHHHHH
Confidence 44431100134677887653 3577899999998876554
No 64
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.33 E-value=0.012 Score=65.09 Aligned_cols=185 Identities=19% Similarity=0.204 Sum_probs=120.1
Q ss_pred chHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhh
Q 002971 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRC 89 (862)
Q Consensus 10 lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~ 89 (862)
....+++++.+++...|.-+..++..+.. .-++..+.+-+.|.++.+|..|...++.++.++-++.++..+..
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~a~~~li~~l~~- 116 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGS------EEAVPLLRELLSDEDPRVRDAAADALGELGDPEAVPPLVELLEN- 116 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhch------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc-
Confidence 34566778888888888888777655532 24788889999999999999999999999999888887665555
Q ss_pred hCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCCh------------hHHHHHHHHHHHHhhcCCCCccc
Q 002971 90 LKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNP------------MVVANAVAALAEIEENSSRPIFE 157 (862)
Q Consensus 90 l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~------------~V~~~a~~~l~~i~~~~~~~~~~ 157 (862)
|.+.+||++|+.++.++.... -+..+..+++|.++ .+..+++.++..+....
T Consensus 117 --d~~~~vR~~aa~aL~~~~~~~--------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~~------ 180 (335)
T COG1413 117 --DENEGVRAAAARALGKLGDER--------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPE------ 180 (335)
T ss_pred --CCcHhHHHHHHHHHHhcCchh--------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCChh------
Confidence 899999999999999886533 24566677777663 34555555555443221
Q ss_pred ccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 002971 158 ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQ 225 (862)
Q Consensus 158 l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~ 225 (862)
....+...+.+...-.+......|......+ ..+...+...+++.+.-|...++..+...
T Consensus 181 ----~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~ 240 (335)
T COG1413 181 ----AIPLLIELLEDEDADVRRAAASALGQLGSEN----VEAADLLVKALSDESLEVRKAALLALGEI 240 (335)
T ss_pred ----hhHHHHHHHhCchHHHHHHHHHHHHHhhcch----hhHHHHHHHHhcCCCHHHHHHHHHHhccc
Confidence 1222333333343333333333333322211 23345556667777778888877776543
No 65
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.33 E-value=0.0007 Score=62.09 Aligned_cols=105 Identities=24% Similarity=0.220 Sum_probs=75.6
Q ss_pred HHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccc---cccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccc
Q 002971 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELV---EDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI 158 (862)
Q Consensus 82 l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l 158 (862)
+++.+.+.+.+.++.+|+.|+.|+..+....|+.. .+.+.++.+.++|+|+|+.|+.+|+.+|..++...+.....+
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 67778889999999999999999999998755433 224788999999999999999999999999987643211111
Q ss_pred -cHHHHHHHHHHhccCChhHHHHHHHHHh
Q 002971 159 -TSHTLSKLLTALNECTEWGQVFILDALS 186 (862)
Q Consensus 159 -~~~~~~~Ll~~l~~~~~w~q~~iL~~L~ 186 (862)
..+.+..|++.+.+.+...+...+.+|.
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~ 116 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALS 116 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHH
Confidence 1123555656665555555555555554
No 66
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.32 E-value=0.058 Score=60.41 Aligned_cols=432 Identities=13% Similarity=0.159 Sum_probs=225.5
Q ss_pred HhHhccCCCcchHHHHHHHHHHhcCCCC-------cHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhh--------
Q 002971 14 VVNCMQTENLELKKLVYLYLINYAKSQP-------DLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKI-------- 78 (862)
Q Consensus 14 vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~-------el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~-------- 78 (862)
++...+++|.++..-++-.+..+..-+- |-++ -.-.-+-+.++|+.+...|+.+-+.|...|+
T Consensus 226 vceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL--~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~ 303 (858)
T COG5215 226 VCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENAL--AALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKY 303 (858)
T ss_pred eehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhh
Confidence 3457788888766555544443322111 1111 1112345678999999999999888765543
Q ss_pred ---------------HHHHHHHHHhhhCC-------CChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhH
Q 002971 79 ---------------TEYLCDPLQRCLKD-------DDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMV 136 (862)
Q Consensus 79 ---------------~~~l~~~v~~~l~d-------~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V 136 (862)
+.++.|.+.++|.. .++.+-+.|.-|+--+-+...+.+-++ ....+.+-+...|-.=
T Consensus 304 ~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~p-Vl~FvEqni~~~~w~n 382 (858)
T COG5215 304 LPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRP-VLGFVEQNIRSESWAN 382 (858)
T ss_pred cccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHH-HHHHHHHhccCchhhh
Confidence 23466777777752 456677777777765556555554332 3455555666555555
Q ss_pred HHHHHHHHHHHhhcCCCCc-ccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHH---HHHHHHHHHhhc--CC
Q 002971 137 VANAVAALAEIEENSSRPI-FEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREA---ENIVERVTPRLQ--HA 210 (862)
Q Consensus 137 ~~~a~~~l~~i~~~~~~~~-~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~---~~il~~v~~~l~--~~ 210 (862)
.-+|+.++..+....+..+ -.+.++.++-+++...|..=|..-..-.++......-++.. ..+...+..++. .-
T Consensus 383 reaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D 462 (858)
T COG5215 383 REAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD 462 (858)
T ss_pred HHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc
Confidence 6677888888766544333 34556667777777666544544333333222210000000 000001111111 12
Q ss_pred ChHHHHHHHHHHHHhhhccCC-----hHHHHHHHHhcccchhh---cccCChhHHHHHHHHHHHHHhhChhhhhccceEE
Q 002971 211 NCAVVLSAVKMILQQMELITS-----TDVVRNLCKKMAPPLVT---LLSAEPEIQYVALRNINLIVQRRPTILAHEIKVF 282 (862)
Q Consensus 211 n~aV~~eai~~i~~~~~~~~~-----~~~~~~~~~~~~~~L~~---lls~~~~iry~aL~~l~~i~~~~p~~~~~~~~~~ 282 (862)
++-+...|...+.++.+.+.. ++.+......+++.|+. +..++.|.|-.+..+|..++...|+.+.+-+.-|
T Consensus 463 ~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~ 542 (858)
T COG5215 463 CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGF 542 (858)
T ss_pred cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 344555555555544333221 12222222234444432 2246789999999999998888887665432211
Q ss_pred EecCCCcHHHHHHHHHHHHHh-----cCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhh----HhHHHHHHHH
Q 002971 283 FCKYNDPIYVKMEKLEIMIKL-----ASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLE----RAAERCISVL 353 (862)
Q Consensus 283 ~~l~~d~~~Ik~~~L~lL~~l-----~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~----~~~~~~v~~l 353 (862)
+ ++-.+||+--..+ +.++ ...++|| ....+.-+..+..+++ +..+..+..+
T Consensus 543 ~-------~~~~~kl~~~isv~~q~l~~eD--~~~~~el-----------qSN~~~vl~aiir~~~~~ie~v~D~lm~Lf 602 (858)
T COG5215 543 Y-------DYTSKKLDECISVLGQILATED--QLLVEEL-----------QSNYIGVLEAIIRTRRRDIEDVEDQLMELF 602 (858)
T ss_pred H-------HHHHHHHHHHHHHhhhhhhhHH--HHHHHHH-----------HHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 1 1223333322211 0010 0112232 2233333333344443 4556677778
Q ss_pred HHHHhhhc-chhHHHHHHHHHHHHHhCcccH----HHHHHHHHHhhccCCchHHHHHHHHHHhhcccccCC-----HHHH
Q 002971 354 LELIKIKV-NYVVQEAIIVIKDIFRRYPNTY----ESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN-----ADEL 423 (862)
Q Consensus 354 l~ll~~~~-~~v~~e~i~~l~~i~~~~p~~~----~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~-----~~~~ 423 (862)
+++++... ..+-.++...|..+...-.+.+ +..++.|.+.+. +.+..+..+++-++|.-++.... +..+
T Consensus 603 ~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln-~~d~~v~~~avglvgdlantl~~df~~y~d~~ 681 (858)
T COG5215 603 IRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALN-CTDRFVLNSAVGLVGDLANTLGTDFNIYADVL 681 (858)
T ss_pred HHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhc-chhHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 88888773 4455666666666554323333 334555555553 33444556677788877665432 4455
Q ss_pred HHHHhhhCCCC--CHHHHHHHHHHHHHHhhcCCCC--ChHHHHHHHHHhc
Q 002971 424 LESFLESFPEE--PAQVQLQLLTATVKLFLKKPTE--GPQQMIQVVLNNA 469 (862)
Q Consensus 424 l~~~~~~~~~e--~~~v~~~iLta~~Kl~~~~~~~--~~~~~i~~~l~~~ 469 (862)
+..+++-+..+ ..++|-.+|+.+.-++...... ..-++|.-+++.+
T Consensus 682 ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqa 731 (858)
T COG5215 682 MSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQA 731 (858)
T ss_pred HHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 66666655544 4678889999988887754322 1234555566654
No 67
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.23 Score=56.83 Aligned_cols=299 Identities=16% Similarity=0.189 Sum_probs=179.5
Q ss_pred HHHHHHHHHhhcCCCCHHHHhHHHHHhcCCCh---hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcc-cccccc
Q 002971 44 AILAVNTFVKDSQDPNPLIRALAVRTMGCIRV---DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA-ELVEDR 119 (862)
Q Consensus 44 ~~L~intl~kDl~~~n~~ir~lALr~l~~i~~---~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p-~~~~~~ 119 (862)
..-++-.+..-+.-|.+.+|-.-..++..+.. ..-.+++.+.+.+++....--=|+.|+.++..+.+-++ +...+.
T Consensus 94 ~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~ 173 (569)
T KOG1242|consen 94 PISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEF 173 (569)
T ss_pred hhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhh
Confidence 34455556667777888888777777766552 22235667778888888777789999999999988665 344456
Q ss_pred chHHHHHHhhcCCChhHHH-HHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhH-------HHHHHHHHhhcccc
Q 002971 120 GFLESLKDLISDNNPMVVA-NAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWG-------QVFILDALSRYKAA 191 (862)
Q Consensus 120 ~~~~~l~~lL~d~d~~V~~-~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~-------q~~iL~~L~~~~~~ 191 (862)
+++..+.+.+.|++..-.. .+..++...+.+-+...-.-+.+.++.++.+..+..+-. ...+++.+..|.-
T Consensus 174 ~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV- 252 (569)
T KOG1242|consen 174 GFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV- 252 (569)
T ss_pred hHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh-
Confidence 7899999999997765544 233333333333232222334456777777765544332 2234444433332
Q ss_pred cHHHHHHHHHHHHHhh-cC--CChHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHH
Q 002971 192 DAREAENIVERVTPRL-QH--ANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLI 267 (862)
Q Consensus 192 ~~~~~~~il~~v~~~l-~~--~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i 267 (862)
..++..++..+ .. .......+.+.+...+ .+..+..+...++|.+..-| .+.|++|-.+..+|.++
T Consensus 253 -----K~llpsll~~l~~~kWrtK~aslellg~m~~~-----ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~ 322 (569)
T KOG1242|consen 253 -----KLLLPSLLGSLLEAKWRTKMASLELLGAMADC-----APKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKF 322 (569)
T ss_pred -----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHh-----chHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 12222221111 11 2223444555554443 45666667777888888767 68999999999999998
Q ss_pred Hhh--Chhhhhccce-EEEecCCCcHHHHHHHHHHHHHh-----cCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHH
Q 002971 268 VQR--RPTILAHEIK-VFFCKYNDPIYVKMEKLEIMIKL-----ASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCA 339 (862)
Q Consensus 268 ~~~--~p~~~~~~~~-~~~~l~~d~~~Ik~~~L~lL~~l-----~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la 339 (862)
... +|+ +++++. .+.|+.++..++ ...++.|++. +++.....++.-|..=+.+.+.+.+|+++..++.++
T Consensus 323 ~svidN~d-I~~~ip~Lld~l~dp~~~~-~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~ 400 (569)
T KOG1242|consen 323 GSVIDNPD-IQKIIPTLLDALADPSCYT-PECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMC 400 (569)
T ss_pred HHhhccHH-HHHHHHHHHHHhcCcccch-HHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHH
Confidence 864 344 455554 345653333233 3455555443 455555666666666667778888899999888888
Q ss_pred Hhh--hHhHHHHHHHHHH
Q 002971 340 IKL--ERAAERCISVLLE 355 (862)
Q Consensus 340 ~k~--~~~~~~~v~~ll~ 355 (862)
.-. +.+...|+..|+.
T Consensus 401 ~LveDp~~lapfl~~Llp 418 (569)
T KOG1242|consen 401 KLVEDPKDLAPFLPSLLP 418 (569)
T ss_pred HhhcCHHHHhhhHHHHhh
Confidence 665 3333344444433
No 68
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.046 Score=61.23 Aligned_cols=281 Identities=16% Similarity=0.206 Sum_probs=172.6
Q ss_pred hcCCCCHHHHhHHHH---HhcCCChhhhHH---HHHHHHHhhhCCCChHHHHHHHHHHHHHH---hhccccccccchHHH
Q 002971 54 DSQDPNPLIRALAVR---TMGCIRVDKITE---YLCDPLQRCLKDDDPYVRKTAAICVAKLY---DINAELVEDRGFLES 124 (862)
Q Consensus 54 Dl~~~n~~ir~lALr---~l~~i~~~~~~~---~l~~~v~~~l~d~~~yVRk~A~~~l~kl~---~~~p~~~~~~~~~~~ 124 (862)
-+...||+.|-.-+. .+-+...-+|+. .+.+.+.+.|.|+++-||.-+=.|+..+. +-.|+.+.-.+.++.
T Consensus 175 riy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~v 254 (675)
T KOG0212|consen 175 RIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINV 254 (675)
T ss_pred HHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhh
Confidence 344557777766544 444555667774 56788899999999999987777666554 467877654456777
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCCh-----hHHHH---HHHHHhhcccccHHHH
Q 002971 125 LKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTE-----WGQVF---ILDALSRYKAADAREA 196 (862)
Q Consensus 125 l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~-----w~q~~---iL~~L~~~~~~~~~~~ 196 (862)
+..=+..+++....-|+.-+.|+.+-.+...+....+++..++.++.+..+ ..|.. ++.+...+....+-+.
T Consensus 255 lv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~ 334 (675)
T KOG0212|consen 255 LVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDY 334 (675)
T ss_pred ccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccch
Confidence 777778899999999999999998877766666667777777777766544 23332 2333322222211233
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhccc-CChhHHHHHHHHHHHHHhhC--hh
Q 002971 197 ENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRR--PT 273 (862)
Q Consensus 197 ~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~lls-~~~~iry~aL~~l~~i~~~~--p~ 273 (862)
..+++.+...+.+.+..-..+|.+.+.++....+. -+-.....+.+.|..-|+ ++.++--.+|..+..|++.. |+
T Consensus 335 ~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~--ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~ 412 (675)
T KOG0212|consen 335 GSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPG--QLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPN 412 (675)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcc--hhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccccc
Confidence 46788888899999888999999999887543222 111111122222332233 45677777787777777653 22
Q ss_pred hhhccceEEEecCCCcHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhh-hhccHHHHHHHHHHHH
Q 002971 274 ILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYA-TEVDVDFVRKAVRAIG 336 (862)
Q Consensus 274 ~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~-~~~d~~~~~~~i~~I~ 336 (862)
.++--...+.....|+..++.++-=++-.||.-=|.+.|-..+-.-+ ++.|-+|+..+|+++.
T Consensus 413 ~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~ILe~e~nl~FAstMV~~Ln 476 (675)
T KOG0212|consen 413 LRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADILEREENLKFASTMVQALN 476 (675)
T ss_pred HHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 21110111112234556666666666666665555555555554433 2455566666665553
No 69
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.25 E-value=0.023 Score=63.89 Aligned_cols=255 Identities=18% Similarity=0.115 Sum_probs=157.3
Q ss_pred CHHHHhHHHHHhcCCChhhhHHHHHHHHHhhh-CCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHH
Q 002971 59 NPLIRALAVRTMGCIRVDKITEYLCDPLQRCL-KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVV 137 (862)
Q Consensus 59 n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l-~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~ 137 (862)
++-.++- |..|..++ +... +.+...+ .+.++-|+..|+.++... +.. ..++.+...|.|.+++|.
T Consensus 38 deRL~Ah-LdgL~~~G-~~a~----~~L~~aL~~d~~~ev~~~aa~al~~~---~~~-----~~~~~L~~~L~d~~~~vr 103 (410)
T TIGR02270 38 EERLLAH-VDGLVLAG-KAAT----ELLVSALAEADEPGRVACAALALLAQ---EDA-----LDLRSVLAVLQAGPEGLC 103 (410)
T ss_pred HHHHHHH-HHHHHHhh-HhHH----HHHHHHHhhCCChhHHHHHHHHHhcc---CCh-----HHHHHHHHHhcCCCHHHH
Confidence 3444443 55555555 4433 4445555 478888888777776532 211 136888889999999999
Q ss_pred HHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHH
Q 002971 138 ANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLS 217 (862)
Q Consensus 138 ~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~e 217 (862)
.++..+|.+|... .....|+..+.+.+|+.+..++..+..... ++ .+.+.+.+++.++.|.-+
T Consensus 104 ~aaa~ALg~i~~~----------~a~~~L~~~L~~~~p~vR~aal~al~~r~~-~~------~~~L~~~L~d~d~~Vra~ 166 (410)
T TIGR02270 104 AGIQAALGWLGGR----------QAEPWLEPLLAASEPPGRAIGLAALGAHRH-DP------GPALEAALTHEDALVRAA 166 (410)
T ss_pred HHHHHHHhcCCch----------HHHHHHHHHhcCCChHHHHHHHHHHHhhcc-Ch------HHHHHHHhcCCCHHHHHH
Confidence 9999999877432 245667777788899999888888876432 11 356677788999999999
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhChhhhhccceEEEecCCCcHHHHHHH
Q 002971 218 AVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEK 296 (862)
Q Consensus 218 ai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~ 296 (862)
|++++..+ ...+... .|...+ +.++++|..++..+..+.. +.....-.. | ......+.+...
T Consensus 167 A~raLG~l----~~~~a~~--------~L~~al~d~~~~VR~aA~~al~~lG~--~~A~~~l~~-~--~~~~g~~~~~~l 229 (410)
T TIGR02270 167 ALRALGEL----PRRLSES--------TLRLYLRDSDPEVRFAALEAGLLAGS--RLAWGVCRR-F--QVLEGGPHRQRL 229 (410)
T ss_pred HHHHHHhh----ccccchH--------HHHHHHcCCCHHHHHHHHHHHHHcCC--HhHHHHHHH-H--HhccCccHHHHH
Confidence 99999875 3333322 234445 5789999999999987754 332211000 0 112234444444
Q ss_pred HHHHHHhcCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhcchhHHHHHHHHHHH
Q 002971 297 LEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDI 375 (862)
Q Consensus 297 L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i 375 (862)
..++ .+.... .++.-|.+.+.+. ..++.++.++|.+..- ..+..|++.+... ++..-+-..+..|
T Consensus 230 ~~~l-al~~~~---~a~~~L~~ll~d~--~vr~~a~~AlG~lg~p------~av~~L~~~l~d~--~~aR~A~eA~~~I 294 (410)
T TIGR02270 230 LVLL-AVAGGP---DAQAWLRELLQAA--ATRREALRAVGLVGDV------EAAPWCLEAMREP--PWARLAGEAFSLI 294 (410)
T ss_pred HHHH-HhCCch---hHHHHHHHHhcCh--hhHHHHHHHHHHcCCc------chHHHHHHHhcCc--HHHHHHHHHHHHh
Confidence 4444 333222 6666666666653 3888899999977642 3455566665432 3444444444444
No 70
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.24 E-value=0.36 Score=54.38 Aligned_cols=237 Identities=15% Similarity=0.175 Sum_probs=130.6
Q ss_pred HHHHHhhcCCCCHHHHh---HHHHHhcCCChhhhHHHHHHHHHhhhCCCCh-HHHHHHHHHHHHHHhhccccccccchHH
Q 002971 48 VNTFVKDSQDPNPLIRA---LAVRTMGCIRVDKITEYLCDPLQRCLKDDDP-YVRKTAAICVAKLYDINAELVEDRGFLE 123 (862)
Q Consensus 48 intl~kDl~~~n~~ir~---lALr~l~~i~~~~~~~~l~~~v~~~l~d~~~-yVRk~A~~~l~kl~~~~p~~~~~~~~~~ 123 (862)
-=.+.|-.+|.|++.|- +|++-|+.+...-+.- ...|.+-+....| .||-.|+..+.++. +.+.+.+ +-.
T Consensus 67 ff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedvlm~--tssiMkD~~~g~~~~~kp~AiRsL~~Vi--d~~tv~~--~er 140 (898)
T COG5240 67 FFAILKLFQHKDLYLRQCVYSAIKELSKLTEDVLMG--TSSIMKDLNGGVPDDVKPMAIRSLFSVI--DGETVYD--FER 140 (898)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHhhcchhhhHH--HHHHHHhhccCCccccccHHHHHHHHhc--Ccchhhh--HHH
Confidence 33568889999998875 5788888776443332 2234444444444 78888877776653 4455543 556
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhc--------------------cCChhHHHHHHH
Q 002971 124 SLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALN--------------------ECTEWGQVFILD 183 (862)
Q Consensus 124 ~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~--------------------~~~~w~q~~iL~ 183 (862)
.+....-++.+.+..+|+..-+.+.+..- ...++.++... ..++..|-..|.
T Consensus 141 ~l~~a~Vs~~~a~~saalv~aYhLlp~~~--------~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalG 212 (898)
T COG5240 141 YLNQAFVSTSMARRSAALVVAYHLLPNNF--------NQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALG 212 (898)
T ss_pred HhhhhccccchhhhhhHHHHhhhhccccH--------HHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHH
Confidence 67777888999998888877766644321 22333332211 136778999999
Q ss_pred HHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhcccCChh-HHHHHHH
Q 002971 184 ALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPE-IQYVALR 262 (862)
Q Consensus 184 ~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~lls~~~~-iry~aL~ 262 (862)
+|-...+.|.-...++++.......-.|.---...+|.+..++. .++++..+ +.|.|-.-+++.-+ +..-+-+
T Consensus 213 lLyq~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~--~n~q~~~q----~rpfL~~wls~k~emV~lE~Ar 286 (898)
T COG5240 213 LLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLK--ENSQALLQ----LRPFLNSWLSDKFEMVFLEAAR 286 (898)
T ss_pred HHHHHhcccHHHHHHHHHHhhcccccccchhheehHHHHHHHHH--hChHHHHH----HHHHHHHHhcCcchhhhHHHHH
Confidence 99777666543333344333322222222111122444444432 35555544 23333344443333 5555677
Q ss_pred HHHHHHhhC--hhhhhccceEEE-ecCCCcHHHHHHHHHHHHHhc
Q 002971 263 NINLIVQRR--PTILAHEIKVFF-CKYNDPIYVKMEKLEIMIKLA 304 (862)
Q Consensus 263 ~l~~i~~~~--p~~~~~~~~~~~-~l~~d~~~Ik~~~L~lL~~l~ 304 (862)
++..++.++ |+.+.+-+..+. .+...-...|-.|+.+|-.|+
T Consensus 287 ~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~la 331 (898)
T COG5240 287 AVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLA 331 (898)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 777777665 444444333222 123334556667777776543
No 71
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.021 Score=66.36 Aligned_cols=172 Identities=17% Similarity=0.204 Sum_probs=115.4
Q ss_pred HHHHHhhcCCCCHHHHhHHH-HHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHH
Q 002971 48 VNTFVKDSQDPNPLIRALAV-RTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (862)
Q Consensus 48 intl~kDl~~~n~~ir~lAL-r~l~~i~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~ 126 (862)
+..+++++.+.-+.-|..|+ ++++.+....=+-.+.++|.++....+--++|-..+-+...-...|+.... .++.+.
T Consensus 15 i~elks~l~s~~~~kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~--avnt~~ 92 (734)
T KOG1061|consen 15 IPELKSQLNSQSKEKRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAIL--AVNTFL 92 (734)
T ss_pred chHHHHHhhhhhhhhHHHHHHHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHh--hhhhhh
Confidence 34456666665555555554 567777755555678899999999888777776666666666677876542 444444
Q ss_pred HhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHH--HHHHHHHHHH
Q 002971 127 DLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAR--EAENIVERVT 204 (862)
Q Consensus 127 ~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~--~~~~il~~v~ 204 (862)
+=-.|.||++.+-|+..+..+.-. .+......-|.+++++-+|+.+...--...++...+.+ +...+++.+.
T Consensus 93 kD~~d~np~iR~lAlrtm~~l~v~------~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~ 166 (734)
T KOG1061|consen 93 KDCEDPNPLIRALALRTMGCLRVD------KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALK 166 (734)
T ss_pred ccCCCCCHHHHHHHhhceeeEeeh------HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHH
Confidence 444578999998887777655321 23344566777778888898887766666665544432 2234677777
Q ss_pred HhhcCCChHHHHHHHHHHHHhhh
Q 002971 205 PRLQHANCAVVLSAVKMILQQME 227 (862)
Q Consensus 205 ~~l~~~n~aV~~eai~~i~~~~~ 227 (862)
.++...|+.|+-.|+.++..+.+
T Consensus 167 ~ll~D~~p~VVAnAlaaL~eI~e 189 (734)
T KOG1061|consen 167 DLLSDSNPMVVANALAALSEIHE 189 (734)
T ss_pred HHhcCCCchHHHHHHHHHHHHHH
Confidence 77888999999999888776643
No 72
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.18 Score=57.68 Aligned_cols=401 Identities=15% Similarity=0.134 Sum_probs=210.2
Q ss_pred HHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHH-HHHHHh-hhCCCChHHHHHHHHHHHHHHhhcccccc--c
Q 002971 43 LAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYL-CDPLQR-CLKDDDPYVRKTAAICVAKLYDINAELVE--D 118 (862)
Q Consensus 43 l~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l-~~~v~~-~l~d~~~yVRk~A~~~l~kl~~~~p~~~~--~ 118 (862)
++...++.+++.+.+.--..--.-|...++-+.++..... ...+-+ -..+.+..+|-++....+-+- ..|+.++ .
T Consensus 118 I~~~~~~~lr~e~~~~vLa~~~~~l~~~g~~~~~~~~~i~l~~~~a~~~~~~~s~~~~~~~~~~~~~lg-~~~ss~~~d~ 196 (823)
T KOG2259|consen 118 ISDYASLELRAECSDHVLAQYLDNLLAIGCPVCEEDIYILLLHGVAKVRSSISSTGNRLLLYCFHLPLG-VSPSSLTHDR 196 (823)
T ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHhccCCCchhhHHHHHhhhHHHhhhcccccchHHHHHHhhhcc-cCCCcccccH
Confidence 5666777777777765433334445555554444433321 111111 122344444444333322222 2333332 2
Q ss_pred cchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcc---c--ccH
Q 002971 119 RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYK---A--ADA 193 (862)
Q Consensus 119 ~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~---~--~~~ 193 (862)
+.....+..+-+|.|+.|..+|+.+|..+.+ -+++....+.+.++.+.|-.+-.....++++..|. | .+.
T Consensus 197 ~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e-----g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 197 EHAARGLIYLEHDQDFRVRTHAVEGLLALSE-----GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHhhcc-----cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 2344557888899999999999999988865 26677777888888888776655555555554433 2 111
Q ss_pred -HHHH----HHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHH-HHHhcccchhhcccCChhHHHHHHHHHHHH
Q 002971 194 -REAE----NIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRN-LCKKMAPPLVTLLSAEPEIQYVALRNINLI 267 (862)
Q Consensus 194 -~~~~----~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~-~~~~~~~~L~~lls~~~~iry~aL~~l~~i 267 (862)
.+-. .....|-..++..+-.|..+|++++..+. .+ +.+.+.+ +-++ ++++..--| -
T Consensus 272 e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~-~v-See~i~QTLdKK-------lms~lRRkr---------~ 333 (823)
T KOG2259|consen 272 ESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFE-QV-SEEIIQQTLDKK-------LMSRLRRKR---------T 333 (823)
T ss_pred hhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHH-Hh-HHHHHHHHHHHH-------Hhhhhhhhh---------h
Confidence 1112 23334455566677789999999987662 22 3444433 2222 222110000 1
Q ss_pred HhhChhhhhccceEEEe--cCCCc-HHHHHHHHHHHHHhcCcCcHHHH----HHHHHHhhhhccHHHHHHHHHHHHHHHH
Q 002971 268 VQRRPTILAHEIKVFFC--KYNDP-IYVKMEKLEIMIKLASDRNIDQV----LLEFKEYATEVDVDFVRKAVRAIGRCAI 340 (862)
Q Consensus 268 ~~~~p~~~~~~~~~~~~--l~~d~-~~Ik~~~L~lL~~l~~~~Nv~~I----v~eL~~y~~~~d~~~~~~~i~~I~~la~ 340 (862)
+.+.|+.....- -+-. .-++| ++= . .|++.+..| ..-+..=+.+.=.++|+.+|.+++.+|.
T Consensus 334 ahkrpk~l~s~G-ewSsGk~~~advpse---e-------~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ 402 (823)
T KOG2259|consen 334 AHKRPKALYSSG-EWSSGKEWNADVPSE---E-------DDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLAT 402 (823)
T ss_pred cccchHHHHhcC-CcccCccccccCchh---h-------ccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHc
Confidence 112222110000 0000 00111 100 0 111111111 0011111122224567788888888888
Q ss_pred hhhHhHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCcccHHHHHHHHHHhhccCCchHHHHHHHHHHhh--cccccC
Q 002971 341 KLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGE--YAERID 418 (862)
Q Consensus 341 k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGE--y~~~i~ 418 (862)
.-|+.+..+++.|++++.+....|.-.++..+..|..+ -.+++..+..+++.|++- .+++++++--+|+- |.+.-
T Consensus 403 ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~-l~i~eeql~~il~~L~D~-s~dvRe~l~elL~~~~~~d~~- 479 (823)
T KOG2259|consen 403 SSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVH-LAIREEQLRQILESLEDR-SVDVREALRELLKNARVSDLE- 479 (823)
T ss_pred CCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-heecHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCcHH-
Confidence 77778888888888888877777777788877777554 556677777777777653 46677766666653 33220
Q ss_pred CHHHHHHHHh---hhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhc-ccCCCChHHHHHHHHHH
Q 002971 419 NADELLESFL---ESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNA-TVETDNPDLRDRAYIYW 486 (862)
Q Consensus 419 ~~~~~l~~~~---~~~~~e~~~v~~~iLta~~Kl~~~~~~~~~~~~i~~~l~~~-~~~s~~~dvrdRA~~y~ 486 (862)
-..-.+..++ ..|+.. |-.++.++.|+..+-+.- ...++.++++.- +.....+++-|++|.-.
T Consensus 480 ~i~m~v~~lL~~L~kyPqD----rd~i~~cm~~iGqnH~~l-v~s~m~rfl~kh~~f~t~e~s~ed~~y~ak 546 (823)
T KOG2259|consen 480 CIDMCVAHLLKNLGKYPQD----RDEILRCMGRIGQNHRRL-VLSNMGRFLEKHTSFATIEPSLEDGFYIAK 546 (823)
T ss_pred HHHHHHHHHHHHhhhCCCC----cHHHHHHHHHHhccChhh-HHHHHHHHHHhcccccccCccccChhhhhh
Confidence 0112222222 344433 334677778887776653 566666666432 23344567777765543
No 73
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.19 E-value=0.0055 Score=63.67 Aligned_cols=184 Identities=19% Similarity=0.195 Sum_probs=113.9
Q ss_pred hhhCCCChHHHHHHHHHHHHHHhhc-cc-cccccchH-------HHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccc
Q 002971 88 RCLKDDDPYVRKTAAICVAKLYDIN-AE-LVEDRGFL-------ESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI 158 (862)
Q Consensus 88 ~~l~d~~~yVRk~A~~~l~kl~~~~-p~-~~~~~~~~-------~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l 158 (862)
+.-.+.++-.|..|+..+-++.+.+ ++ ..+ .+. ..+...+.|.+..|+..|+.++..+...-+...-..
T Consensus 14 ~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~--~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~ 91 (228)
T PF12348_consen 14 KKESESDWEERVEALQKLRSLIKGNAPEDFPP--DFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY 91 (228)
T ss_dssp HHHT-SSHHHHHHHHHHHHHHHHH-B-----H--HHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH
T ss_pred ccCCccCHHHHHHHHHHHHHHHHcCCccccHH--HHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH
Confidence 3347799999999999999998877 22 221 233 345567788889999999999999987654443234
Q ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHH-HHHHHHhhcCCChHHHHHHHHHHHHhhhccC-ChHHH-
Q 002971 159 TSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENI-VERVTPRLQHANCAVVLSAVKMILQQMELIT-STDVV- 235 (862)
Q Consensus 159 ~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~i-l~~v~~~l~~~n~aV~~eai~~i~~~~~~~~-~~~~~- 235 (862)
....+..|++.+.+...+......+.|..+...-. -...+ ...+....+|.|+.|...|+.++..++...+ +...+
T Consensus 92 ~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 92 ADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 45567788888888888877766666655543322 11233 6667788999999999999999888765443 11111
Q ss_pred -HHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhChhh
Q 002971 236 -RNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTI 274 (862)
Q Consensus 236 -~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~~ 274 (862)
......+.+.+..++ ..++++|..+-+.+..+.+..|+-
T Consensus 171 ~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred ccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 111234566667777 478999999999999998877754
No 74
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.16 E-value=0.58 Score=52.78 Aligned_cols=108 Identities=16% Similarity=0.207 Sum_probs=74.3
Q ss_pred chHHHhHhccC--CCc-----chHHHHHHHHHHhcCCCCcHHH-HHHHHHHhhcCCCCHHHHhHHHHHhcCCCh------
Q 002971 10 LFTDVVNCMQT--ENL-----ELKKLVYLYLINYAKSQPDLAI-LAVNTFVKDSQDPNPLIRALAVRTMGCIRV------ 75 (862)
Q Consensus 10 lf~~vv~l~~s--~~~-----~~Kkl~Yl~l~~~~~~~~el~~-L~intl~kDl~~~n~~ir~lALr~l~~i~~------ 75 (862)
..|.+++++.. +|+ ..-+-+--.+..|+...-|..+ -+--.+...++++|-.-|-.|.-++|++..
T Consensus 322 vlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~ 401 (858)
T COG5215 322 VLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDC 401 (858)
T ss_pred HHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHH
Confidence 45666776654 222 2333344444555554444322 233345678899999999999999999862
Q ss_pred -hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccccc
Q 002971 76 -DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE 117 (862)
Q Consensus 76 -~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~ 117 (862)
..+++...|.|.....|+.-.|+.+++.|++++...-|+.+.
T Consensus 402 lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~ 444 (858)
T COG5215 402 LTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIIS 444 (858)
T ss_pred HHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcC
Confidence 235567778888888999999999999999999887666553
No 75
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.14 E-value=0.046 Score=57.48 Aligned_cols=335 Identities=16% Similarity=0.170 Sum_probs=186.0
Q ss_pred chHHHhHhccCCCcchHHH-HHHHHHHhcCCCC-c----HHHHHHHHHHhhc-CCCCHHHHhHHHHHhcCCChhhh----
Q 002971 10 LFTDVVNCMQTENLELKKL-VYLYLINYAKSQP-D----LAILAVNTFVKDS-QDPNPLIRALAVRTMGCIRVDKI---- 78 (862)
Q Consensus 10 lf~~vv~l~~s~~~~~Kkl-~Yl~l~~~~~~~~-e----l~~L~intl~kDl-~~~n~~ir~lALr~l~~i~~~~~---- 78 (862)
-||++.+-+-|+|++...= +|=+=..+.++.+ - +.-=++.-|..-+ ++.+.+.+--|--+|.+|.+-..
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk 151 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK 151 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence 4688888888888886644 4555555555542 2 1111233444444 44444555455555555543221
Q ss_pred --HH-HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcc---ccccccchHHHHHHhhcC--CChhHHHHHHHHHHHHhhc
Q 002971 79 --TE-YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA---ELVEDRGFLESLKDLISD--NNPMVVANAVAALAEIEEN 150 (862)
Q Consensus 79 --~~-~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p---~~~~~~~~~~~l~~lL~d--~d~~V~~~a~~~l~~i~~~ 150 (862)
++ .-+|-..++|.+++.-||--|+.|+..+.--++ +.+-.-+..+.+..+|.. .+...+.++.-.|..+|..
T Consensus 152 vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRG 231 (526)
T COG5064 152 VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRG 231 (526)
T ss_pred EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCC
Confidence 11 335777899999999999999999998875443 333333556666666654 3457888999999999875
Q ss_pred -CCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHH-HHH-----HHHHHHhhcCCChHHHHHHHHHHH
Q 002971 151 -SSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREA-ENI-----VERVTPRLQHANCAVVLSAVKMIL 223 (862)
Q Consensus 151 -~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~-~~i-----l~~v~~~l~~~n~aV~~eai~~i~ 223 (862)
+|++-|.-+.+.+..|.+.+...+|-..+-....++.+. ..+.|. .-+ ..++...|.|.+.-|.--|++.+.
T Consensus 232 knP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYls-Dg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vG 310 (526)
T COG5064 232 KNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLS-DGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVG 310 (526)
T ss_pred CCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhc-cCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhc
Confidence 455667666666666655554445443333333343332 222222 222 345677788877666666666665
Q ss_pred HhhhccCChHHHHHHHHh--cccchhhcccC-ChhHHHHHHHHHHHHHhhChhhhhccceEEEecCCCcHHHHHHHHHHH
Q 002971 224 QQMELITSTDVVRNLCKK--MAPPLVTLLSA-EPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIM 300 (862)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~--~~~~L~~lls~-~~~iry~aL~~l~~i~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL 300 (862)
++. +-.+...++..+ +.+++..||++ ..++|--+..+|..|..-+.+-++
T Consensus 311 NIV---TG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiq------------------------ 363 (526)
T COG5064 311 NIV---TGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQ------------------------ 363 (526)
T ss_pred Cee---ecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHH------------------------
Confidence 542 222222222212 22334445542 336777776666665543322111
Q ss_pred HHhcCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhh---hH-----hHHHHHHHHHHHHhhhcchhHHHHHHHH
Q 002971 301 IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKL---ER-----AAERCISVLLELIKIKVNYVVQEAIIVI 372 (862)
Q Consensus 301 ~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~---~~-----~~~~~v~~ll~ll~~~~~~v~~e~i~~l 372 (862)
.+.+ .| ++.-|.+.++..+.-++++++++|....... |. ..+-+++-|.++|....+.+.+-+...+
T Consensus 364 -avid-~n---liPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~ 438 (526)
T COG5064 364 -AVID-AN---LIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAI 438 (526)
T ss_pred -HHHh-cc---cchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHH
Confidence 0011 11 2333445555667888999999997654321 21 1223456666666666665555555555
Q ss_pred HHHHH
Q 002971 373 KDIFR 377 (862)
Q Consensus 373 ~~i~~ 377 (862)
.+|++
T Consensus 439 eniLk 443 (526)
T COG5064 439 ENILK 443 (526)
T ss_pred HHHHh
Confidence 55554
No 76
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.13 E-value=0.0011 Score=60.71 Aligned_cols=102 Identities=20% Similarity=0.206 Sum_probs=81.3
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHHhcCCCh--hh----hHH-HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccc---c
Q 002971 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRV--DK----ITE-YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---V 116 (862)
Q Consensus 47 ~intl~kDl~~~n~~ir~lALr~l~~i~~--~~----~~~-~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~---~ 116 (862)
+++.+.+=+.+.|+.+|..|+.+|+++.. ++ +.+ .+++.+.+++.|+++.||+.|+.++..+.+..|+. +
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 45556666677789999999999998874 23 333 56788899999999999999999999998866542 2
Q ss_pred cccchHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 002971 117 EDRGFLESLKDLISDNNPMVVANAVAALAEIE 148 (862)
Q Consensus 117 ~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~ 148 (862)
.+.+.++.+.++|++.+..+...++.+|..++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 33568899999999999999999999888764
No 77
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.11 E-value=0.074 Score=59.66 Aligned_cols=283 Identities=17% Similarity=0.145 Sum_probs=156.2
Q ss_pred HHHHHHHhccCChhHHHHHHHHHhhccc---cc--HHHHHHHHHHHHHhhcCC-ChHHHHHHHHHHHHhhhccCChHHHH
Q 002971 163 LSKLLTALNECTEWGQVFILDALSRYKA---AD--AREAENIVERVTPRLQHA-NCAVVLSAVKMILQQMELITSTDVVR 236 (862)
Q Consensus 163 ~~~Ll~~l~~~~~w~q~~iL~~L~~~~~---~~--~~~~~~il~~v~~~l~~~-n~aV~~eai~~i~~~~~~~~~~~~~~ 236 (862)
+..++..|...+.+.+.....+|+.+.. .. ......+.+.+...+++. +..-+.-|++++..++ ..++...
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL---~~~~~R~ 179 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLL---RVDEYRF 179 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHh---CCchHHH
Confidence 4555555555677777777777776542 21 112223444555566543 2344455556654443 2233222
Q ss_pred HH-HHhcccchhhcccC---ChhHHHHHHHHHHHHHhhCh--hhhhcc--ce-EEEecCCCc-HHHHHHHHHHHHHhcCc
Q 002971 237 NL-CKKMAPPLVTLLSA---EPEIQYVALRNINLIVQRRP--TILAHE--IK-VFFCKYNDP-IYVKMEKLEIMIKLASD 306 (862)
Q Consensus 237 ~~-~~~~~~~L~~lls~---~~~iry~aL~~l~~i~~~~p--~~~~~~--~~-~~~~l~~d~-~~Ik~~~L~lL~~l~~~ 306 (862)
.+ -.+.+++|..+|++ ...++|-++-++-.+.-..+ ..+..+ +. ...+....+ .-|-|.++-+|..+.+.
T Consensus 180 ~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~ 259 (429)
T cd00256 180 AFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISK 259 (429)
T ss_pred HHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence 21 12345566677754 44799999999988865422 111111 11 111222222 44667777788888874
Q ss_pred C--------cHHHHHH-HHHHhhh------hccHHHHHHHHHHHHHHHHhhh--HhHHHHHHHH-HHHHhhhcchhHHHH
Q 002971 307 R--------NIDQVLL-EFKEYAT------EVDVDFVRKAVRAIGRCAIKLE--RAAERCISVL-LELIKIKVNYVVQEA 368 (862)
Q Consensus 307 ~--------Nv~~Iv~-eL~~y~~------~~d~~~~~~~i~~I~~la~k~~--~~~~~~v~~l-l~ll~~~~~~v~~e~ 368 (862)
. ....++. .+...+. -.|.|+..++-.--..+.+++. +..+.|..-+ ...|+-+..|-.+.-
T Consensus 260 ~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~F 339 (429)
T cd00256 260 RVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKF 339 (429)
T ss_pred ccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchH
Confidence 3 1122232 2322222 2577776665443333444332 2344444332 234444455656666
Q ss_pred HH-HHHHHHHhCcccHHHHHHHHHHhhccCCchHHHHHHHHHHhhcccccCCHHHHHHHH------hhhCCCCCHHHHHH
Q 002971 369 II-VIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESF------LESFPEEPAQVQLQ 441 (862)
Q Consensus 369 i~-~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~~~~~l~~~------~~~~~~e~~~v~~~ 441 (862)
|. ...++-.++ -.++..|++.++.-.+|...+.+++=||||....+....+++.+ .+-...++++||..
T Consensus 340 W~EN~~kf~~~~----~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~e 415 (429)
T cd00256 340 WRENADRLNEKN----YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYE 415 (429)
T ss_pred HHHHHHHHHhcc----hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHH
Confidence 65 444443222 35678888888766788888999999999999887766665532 23344678888888
Q ss_pred HHHHHHHHhhc
Q 002971 442 LLTATVKLFLK 452 (862)
Q Consensus 442 iLta~~Kl~~~ 452 (862)
.|.|.-|+...
T Consensus 416 AL~avQklm~~ 426 (429)
T cd00256 416 ALLAVQKLMVH 426 (429)
T ss_pred HHHHHHHHHHh
Confidence 88888887543
No 78
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.03 E-value=0.55 Score=56.03 Aligned_cols=170 Identities=10% Similarity=0.137 Sum_probs=118.4
Q ss_pred HHHHHhh-cCCCCHHHHhHHHHHhcC-CChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHH
Q 002971 48 VNTFVKD-SQDPNPLIRALAVRTMGC-IRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESL 125 (862)
Q Consensus 48 intl~kD-l~~~n~~ir~lALr~l~~-i~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l 125 (862)
+.+++.. +.+.|...|--|++.+=. +..-+=...+.++|.|.....+.-+||--.+-+...-+.+|+...- .++.+
T Consensus 20 ~~~~~sg~l~s~n~~~kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL--avNti 97 (757)
T COG5096 20 VAALSSGRLESSNDYKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL--AVNTI 97 (757)
T ss_pred HhhhccccccccChHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH--HHHHH
Confidence 4455666 999999999999987643 3322336677888888888999999998888888888888876542 46777
Q ss_pred HHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHH--HHHHH
Q 002971 126 KDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN--IVERV 203 (862)
Q Consensus 126 ~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~--il~~v 203 (862)
++=|.|+|+.+.+.|+..+..+... .+....+.-+.+++.+.+++..-...-.+.++-.-+.+...+ .+...
T Consensus 98 ~kDl~d~N~~iR~~AlR~ls~l~~~------el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l 171 (757)
T COG5096 98 QKDLQDPNEEIRGFALRTLSLLRVK------ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDIL 171 (757)
T ss_pred HhhccCCCHHHHHHHHHHHHhcChH------HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHH
Confidence 7788899999999999988877432 234445556666777888876555444444433333332221 23444
Q ss_pred HHhhcCCChHHHHHHHHHHHHh
Q 002971 204 TPRLQHANCAVVLSAVKMILQQ 225 (862)
Q Consensus 204 ~~~l~~~n~aV~~eai~~i~~~ 225 (862)
..++...++-|+-+|...+..+
T Consensus 172 ~~l~~D~dP~Vi~nAl~sl~~i 193 (757)
T COG5096 172 KELVADSDPIVIANALASLAEI 193 (757)
T ss_pred HHHhhCCCchHHHHHHHHHHHh
Confidence 5567788898888888887765
No 79
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.02 E-value=0.0036 Score=54.09 Aligned_cols=83 Identities=28% Similarity=0.371 Sum_probs=59.8
Q ss_pred HHHHhhh-CCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHH
Q 002971 84 DPLQRCL-KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHT 162 (862)
Q Consensus 84 ~~v~~~l-~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~ 162 (862)
+.+.+.+ .|++++||..|+.++.++. + ...++.|..+++|.|+.|...|+.+|..+... ..
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~--~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~----------~~ 63 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG--D------PEAIPALIELLKDEDPMVRRAAARALGRIGDP----------EA 63 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT--H------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHHH----------HT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC--C------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH----------HH
Confidence 4566766 8999999999999999442 2 24678999999999999999999999988532 23
Q ss_pred HHHHHHHhccCChhH-HHHHHHH
Q 002971 163 LSKLLTALNECTEWG-QVFILDA 184 (862)
Q Consensus 163 ~~~Ll~~l~~~~~w~-q~~iL~~ 184 (862)
+..|.+.+.+.+.|. +...++.
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~a 86 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEA 86 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhh
Confidence 556666665554443 4444443
No 80
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.99 E-value=0.14 Score=59.61 Aligned_cols=121 Identities=17% Similarity=0.183 Sum_probs=61.3
Q ss_pred hccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH-Hh-----CcccHHH-HHHHHHHhh
Q 002971 322 EVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIF-RR-----YPNTYES-IIATLCESL 394 (862)
Q Consensus 322 ~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~-~~-----~p~~~~~-~i~~L~~~l 394 (862)
+.-.+|++.++.+|-.+++-.+...+.-+..|..++++..- . +...++-.++ +. +|..+.. +..++. |
T Consensus 403 eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~--~-~i~~rILhlLG~EgP~a~~Pskyir~iyNRvi--L 477 (865)
T KOG1078|consen 403 EGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEF--T-QIAVRILHLLGKEGPKAPNPSKYIRFIYNRVI--L 477 (865)
T ss_pred ccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccc--h-HHHHHHHHHHhccCCCCCCcchhhHHHhhhhh--h
Confidence 44567888888888888876666667777777777776431 2 2222333333 22 3444322 111111 2
Q ss_pred ccCCchHHHHHHHHHHhhcccccCCH-HHHHHHHhhhCCCCCHHHHHHHHHHHHHHhh
Q 002971 395 DTLDEPEAKASMIWIIGEYAERIDNA-DELLESFLESFPEEPAQVQLQLLTATVKLFL 451 (862)
Q Consensus 395 ~~~~~~~~~~~~~wilGEy~~~i~~~-~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~ 451 (862)
+ ....+++++-.+..||-..... +.+.-.+..-..+.+.+||-.. |.+.|...
T Consensus 478 E---n~ivRaaAv~alaKfg~~~~~l~~sI~vllkRc~~D~DdevRdrA-tf~l~~l~ 531 (865)
T KOG1078|consen 478 E---NAIVRAAAVSALAKFGAQDVVLLPSILVLLKRCLNDSDDEVRDRA-TFYLKNLE 531 (865)
T ss_pred h---hhhhHHHHHHHHHHHhcCCCCccccHHHHHHHHhcCchHHHHHHH-HHHHHHhh
Confidence 2 3445566666666666322222 2222222222345566676533 44444444
No 81
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.94 E-value=0.13 Score=56.83 Aligned_cols=209 Identities=22% Similarity=0.303 Sum_probs=137.5
Q ss_pred HHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHH
Q 002971 46 LAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESL 125 (862)
Q Consensus 46 L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l 125 (862)
.....+.+.+.++++.+|..|...++.+...+.++. +.+.+.|.++.||..|+.++.++- +|+ -.+.+
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~~av~~----l~~~l~d~~~~vr~~a~~aLg~~~--~~~------a~~~l 110 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSEEAVPL----LRELLSDEDPRVRDAAADALGELG--DPE------AVPPL 110 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchHHHHHH----HHHHhcCCCHHHHHHHHHHHHccC--Chh------HHHHH
Confidence 467888999999999999999999999988876665 689999999999999999888763 343 34566
Q ss_pred HHhhc-CCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHH
Q 002971 126 KDLIS-DNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVT 204 (862)
Q Consensus 126 ~~lL~-d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~ 204 (862)
..+|. |.|..|...|..+|..+.... .+..++..+.+...+.+...+ +.
T Consensus 111 i~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~---------~~----------- 160 (335)
T COG1413 111 VELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAAL---------DA----------- 160 (335)
T ss_pred HHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhc---------cc-----------
Confidence 66666 899999999999999886543 244555555544333311000 00
Q ss_pred HhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhChhhhhccceEEE
Q 002971 205 PRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFF 283 (862)
Q Consensus 205 ~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~~~~~~~~~~~ 283 (862)
.+ ..+.+.++..+..+ .++..+ +.+..++ .....+|..+...+..+......+... .+.
T Consensus 161 -~~----~~~r~~a~~~l~~~----~~~~~~--------~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~~~~~~~---l~~ 220 (335)
T COG1413 161 -AL----LDVRAAAAEALGEL----GDPEAI--------PLLIELLEDEDADVRRAAASALGQLGSENVEAADL---LVK 220 (335)
T ss_pred -hH----HHHHHHHHHHHHHc----CChhhh--------HHHHHHHhCchHHHHHHHHHHHHHhhcchhhHHHH---HHH
Confidence 00 04666666666543 343322 2334444 345578888888888877654221110 111
Q ss_pred ecCCCcHHHHHHHHHHHHHhcCcCcHHHHHHHH
Q 002971 284 CKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEF 316 (862)
Q Consensus 284 ~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL 316 (862)
.+.++...+|.+++..|..+..++....++..+
T Consensus 221 ~~~~~~~~vr~~~~~~l~~~~~~~~~~~l~~~l 253 (335)
T COG1413 221 ALSDESLEVRKAALLALGEIGDEEAVDALAKAL 253 (335)
T ss_pred HhcCCCHHHHHHHHHHhcccCcchhHHHHHHHH
Confidence 244566888888888888877766655555544
No 82
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=96.93 E-value=0.07 Score=56.15 Aligned_cols=255 Identities=19% Similarity=0.178 Sum_probs=170.6
Q ss_pred HHHhHhc-cCCCcchHHHHHHHHHHhcCCCCcHHH-----HHHHHHHhhcCCCCHHHHhHHHHHhcCCC-hhhhHH-HH-
Q 002971 12 TDVVNCM-QTENLELKKLVYLYLINYAKSQPDLAI-----LAVNTFVKDSQDPNPLIRALAVRTMGCIR-VDKITE-YL- 82 (862)
Q Consensus 12 ~~vv~l~-~s~~~~~Kkl~Yl~l~~~~~~~~el~~-----L~intl~kDl~~~n~~ir~lALr~l~~i~-~~~~~~-~l- 82 (862)
+..+.+| ..+..-++.=+--++.+++.-..+... =++.-|..=|.+++..+|--|+-+||+|. ..+.++ ++
T Consensus 117 pRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL 196 (526)
T COG5064 117 PRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVL 196 (526)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHH
Confidence 3344444 333444444455566666654322111 13555777788999999999999999997 344444 33
Q ss_pred ----HHHHHhhhCCCCh--HHHHHHHHHHHHHHh-hcccc--ccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCC
Q 002971 83 ----CDPLQRCLKDDDP--YVRKTAAICVAKLYD-INAEL--VEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR 153 (862)
Q Consensus 83 ----~~~v~~~l~d~~~--yVRk~A~~~l~kl~~-~~p~~--~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~ 153 (862)
..++..++.++.+ -.-|+|-..+..+.| ++|.- -.-..-++.|.+|+...|+.|+..|+-++..+... +.
T Consensus 197 ~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg-~~ 275 (526)
T COG5064 197 QCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDG-PN 275 (526)
T ss_pred hcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccC-cH
Confidence 4677777777655 455889999999987 45531 11123578899999999999999999999988643 22
Q ss_pred Ccc--cccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHH-----HHHHHHhhcCCChHHHHHHHHHHHHhh
Q 002971 154 PIF--EITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENI-----VERVTPRLQHANCAVVLSAVKMILQQM 226 (862)
Q Consensus 154 ~~~--~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~i-----l~~v~~~l~~~n~aV~~eai~~i~~~~ 226 (862)
.+. .+......+|+..|...+--.|.-+||.+......++....-+ +..+.++|.|.-..+.-||+=++.++.
T Consensus 276 E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNIT 355 (526)
T COG5064 276 EKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNIT 355 (526)
T ss_pred HHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccc
Confidence 222 2334556778888877777778889999987765544333322 455667788877789999998887763
Q ss_pred hccCChHHHHH-HHHhcccchhhccc-CChhHHHHHHHHHHHHHh
Q 002971 227 ELITSTDVVRN-LCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQ 269 (862)
Q Consensus 227 ~~~~~~~~~~~-~~~~~~~~L~~lls-~~~~iry~aL~~l~~i~~ 269 (862)
. .+.+-++. +-.+++|+|+.+|+ .+--+|--|..++.....
T Consensus 356 A--Gnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNats 398 (526)
T COG5064 356 A--GNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATS 398 (526)
T ss_pred c--CCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 2 34444433 33478999999995 566788878777776554
No 83
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.48 Score=50.61 Aligned_cols=258 Identities=16% Similarity=0.174 Sum_probs=151.8
Q ss_pred ccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHH----HHHHHhhcCCCCHHHHhHHHHHhcCCChhhhH----
Q 002971 8 SSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILA----VNTFVKDSQDPNPLIRALAVRTMGCIRVDKIT---- 79 (862)
Q Consensus 8 s~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~----intl~kDl~~~n~~ir~lALr~l~~i~~~~~~---- 79 (862)
+.++--++++-.++|...+|-.-=++.++-+....--.|+ +..+..-+.+.|+.+|--+-.++++|++..-.
T Consensus 166 sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~L 245 (550)
T KOG4224|consen 166 SGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKIL 245 (550)
T ss_pred ccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHH
Confidence 4455667788888888888876555555443322111111 23356677899999999999999999875543
Q ss_pred ----HHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcc---ccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCC
Q 002971 80 ----EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA---ELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (862)
Q Consensus 80 ----~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p---~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~ 152 (862)
+-+++.+..++.|.++-|+=-|.+|+..+..... +++ +.+-+|.+.+||.++-.-.+.+.+..+..|.-+..
T Consensus 246 aqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv-~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl 324 (550)
T KOG4224|consen 246 AQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIV-EAGSLPLLVELLQSPMGPLILASVACIRNISIHPL 324 (550)
T ss_pred HhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHH-hcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC
Confidence 3478899999999999999999999887764321 233 35678999999987665556666666755544421
Q ss_pred CCcccccHHHHHHHHHHhcc-CChhHHHHHHHHHhhcccccHHHHHHH-----HHHHHHhhcCCChHHHHHHHHHHHHhh
Q 002971 153 RPIFEITSHTLSKLLTALNE-CTEWGQVFILDALSRYKAADAREAENI-----VERVTPRLQHANCAVVLSAVKMILQQM 226 (862)
Q Consensus 153 ~~~~~l~~~~~~~Ll~~l~~-~~~w~q~~iL~~L~~~~~~~~~~~~~i-----l~~v~~~l~~~n~aV~~eai~~i~~~~ 226 (862)
....-.....++-|+..|.- -+|-.|+.....|..+..........+ ++.+..++....-+|.-+.--+|-.+.
T Consensus 325 Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~La 404 (550)
T KOG4224|consen 325 NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLA 404 (550)
T ss_pred cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 11111222334445555532 367789988888887765433332222 344555555544455444433433321
Q ss_pred hccCChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHH
Q 002971 227 ELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIV 268 (862)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~ 268 (862)
-.-.+.+.+.. ..+.+.|+-++ +.+.|+|=-+-.++..+.
T Consensus 405 l~d~~k~~lld--~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nls 445 (550)
T KOG4224|consen 405 LNDNDKEALLD--SGIIPILIPWTGSESEEVRGNAAAALINLS 445 (550)
T ss_pred hccccHHHHhh--cCCcceeecccCccchhhcccHHHHHHhhh
Confidence 00012222211 24566666666 334456655555555544
No 84
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.84 E-value=0.034 Score=58.27 Aligned_cols=167 Identities=14% Similarity=0.183 Sum_probs=115.2
Q ss_pred CCCHHHHhHHHHHhcCCChh----hhHHH--HHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHh-h
Q 002971 57 DPNPLIRALAVRTMGCIRVD----KITEY--LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDL-I 129 (862)
Q Consensus 57 ~~n~~ir~lALr~l~~i~~~----~~~~~--l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~l-L 129 (862)
+.+|.++..|+-+|++...- +++.. .++.|.+.+.+++|-||.+|+.|+..+---.++...-..+++.+.+. +
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~ 103 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV 103 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence 46899999999999998753 34432 25788999999999999999999987754333322212356655543 4
Q ss_pred cC-CChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHH-----HHH
Q 002971 130 SD-NNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIV-----ERV 203 (862)
Q Consensus 130 ~d-~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il-----~~v 203 (862)
.+ -|..+..+++.+|..+.-.+. .-.+....+..++..|..-++-.|...|++|..+.. ++....+++ ..+
T Consensus 104 s~~lns~~Q~agLrlL~nLtv~~~--~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~~~ 180 (254)
T PF04826_consen 104 SSPLNSEVQLAGLRLLTNLTVTND--YHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE-NPDMTRELLSAQVLSSF 180 (254)
T ss_pred cCCCCCHHHHHHHHHHHccCCCcc--hhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc-CHHHHHHHHhccchhHH
Confidence 43 477888899999998854321 123344567788888888888899999999988763 344444443 334
Q ss_pred HHhhcCC-ChHHHHHHHHHHHHhh
Q 002971 204 TPRLQHA-NCAVVLSAVKMILQQM 226 (862)
Q Consensus 204 ~~~l~~~-n~aV~~eai~~i~~~~ 226 (862)
..+++.. +..+++.++..+-++.
T Consensus 181 ~~Lf~~~~~~~~l~~~l~~~~ni~ 204 (254)
T PF04826_consen 181 LSLFNSSESKENLLRVLTFFENIN 204 (254)
T ss_pred HHHHccCCccHHHHHHHHHHHHHH
Confidence 4455543 4688888888777653
No 85
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.81 E-value=0.39 Score=57.70 Aligned_cols=407 Identities=15% Similarity=0.177 Sum_probs=197.6
Q ss_pred hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCc
Q 002971 76 DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPI 155 (862)
Q Consensus 76 ~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~ 155 (862)
..+-..+.+-..++..|..|.||++++--+..+-+.-++........+....+++|..-.|..+|+..+..+...-....
T Consensus 232 ~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~ 311 (759)
T KOG0211|consen 232 DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD 311 (759)
T ss_pred HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch
Confidence 44556777788889999999999999999998888777665555678888999998888999999888888765422111
Q ss_pred ccccHHHHHHHHHHhccCChhHHHHH-----HHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccC
Q 002971 156 FEITSHTLSKLLTALNECTEWGQVFI-----LDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELIT 230 (862)
Q Consensus 156 ~~l~~~~~~~Ll~~l~~~~~w~q~~i-----L~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~ 230 (862)
+..+.....+++...+. .|-+.+. ..+-..+.+ +.. ..+....+...+++.-..+.++.++-.-.+..+.+
T Consensus 312 -d~~~~~~~~l~~~~~d~-~~~v~~~~~~~~~~L~~~~~~-~~~-~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~ 387 (759)
T KOG0211|consen 312 -DVVKSLTESLVQAVEDG-SWRVSYMVADKFSELSSAVGP-SAT-RTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLN 387 (759)
T ss_pred -hhhhhhhHHHHHHhcCh-hHHHHHHHhhhhhhHHHHhcc-ccC-cccchhhHHHHhcchhhhhhHHhhcchHHHhhhcC
Confidence 22223334444443332 3333222 111111222 000 00111112222222222333333222211111111
Q ss_pred ChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhCh--hhhhccceEEE-ecCCCcHHHHHHHHHHHHH---h
Q 002971 231 STDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRP--TILAHEIKVFF-CKYNDPIYVKMEKLEIMIK---L 303 (862)
Q Consensus 231 ~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p--~~~~~~~~~~~-~l~~d~~~Ik~~~L~lL~~---l 303 (862)
.+....-....+.+.+..+. ++...+|-.....+.-+....| ..+.+....+. .+.+++..|+.--.+.+.. .
T Consensus 388 ~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v 467 (759)
T KOG0211|consen 388 ASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEV 467 (759)
T ss_pred cccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhc
Confidence 10000000001111111222 2233333332222222222222 11222222222 3445556666655543322 2
Q ss_pred cCcCcHHHHHHHHHH----hhhhccHHHHHHHHHHHHHHHHhhh-H-hHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHH
Q 002971 304 ASDRNIDQVLLEFKE----YATEVDVDFVRKAVRAIGRCAIKLE-R-AAERCISVLLELIKIKVNYVVQEAIIVIKDIFR 377 (862)
Q Consensus 304 ~~~~Nv~~Iv~eL~~----y~~~~d~~~~~~~i~~I~~la~k~~-~-~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~ 377 (862)
-+..++..+.+-++. ...+..-..+.++++.|-.++.... . .-+.+...+...+.+....+...+...+..++.
T Consensus 468 ~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~ 547 (759)
T KOG0211|consen 468 NDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVE 547 (759)
T ss_pred cCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHH
Confidence 222333333333332 2233334455666677766665432 1 112233334444444444566666667776666
Q ss_pred hCc--ccHHHHHHHHHHhhccCCchH--HHHHHHHHHhhcccccCC---HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHh
Q 002971 378 RYP--NTYESIIATLCESLDTLDEPE--AKASMIWIIGEYAERIDN---ADELLESFLESFPEEPAQVQLQLLTATVKLF 450 (862)
Q Consensus 378 ~~p--~~~~~~i~~L~~~l~~~~~~~--~~~~~~wilGEy~~~i~~---~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~ 450 (862)
.+. ..+...+.++..... ++. .+.+++..+-+.+..... ..+++-.+.+--.+-.+.||.-++-.+-|+.
T Consensus 548 ~~G~~w~~~~~i~k~L~~~~---q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~ 624 (759)
T KOG0211|consen 548 TFGSEWARLEEIPKLLAMDL---QDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKIL 624 (759)
T ss_pred HhCcchhHHHhhHHHHHHhc---CcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHH
Confidence 554 223334444433222 221 234444444444443332 3455555555555667899998887777775
Q ss_pred hcCCCCChHHHHHHHHHhcccCCCChHHHHHHHHHHHHhc
Q 002971 451 LKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLS 490 (862)
Q Consensus 451 ~~~~~~~~~~~i~~~l~~~~~~s~~~dvrdRA~~y~~ll~ 490 (862)
..-........|..+++... .+.|.|+|-||-.-...+.
T Consensus 625 ~~L~~~~~~~~v~pll~~L~-~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 625 KLLDESVRDEEVLPLLETLS-SDQELDVRYRAILAFGSIE 663 (759)
T ss_pred hhcchHHHHHHHHHHHHHhc-cCcccchhHHHHHHHHHHH
Confidence 54322214567778877654 4689999999988776654
No 86
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.63 E-value=0.026 Score=68.24 Aligned_cols=208 Identities=15% Similarity=0.170 Sum_probs=132.4
Q ss_pred ccchHHHhHhccCCCcchHHHHHHHHH-HhcCCCCcHHHHHHHHHHhh--cCCCCHHHHhHHHHHhcCC----ChhhhHH
Q 002971 8 SSLFTDVVNCMQTENLELKKLVYLYLI-NYAKSQPDLAILAVNTFVKD--SQDPNPLIRALAVRTMGCI----RVDKITE 80 (862)
Q Consensus 8 s~lf~~vv~l~~s~~~~~Kkl~Yl~l~-~~~~~~~el~~L~intl~kD--l~~~n~~ir~lALr~l~~i----~~~~~~~ 80 (862)
..+||++-.+...++-+.-|++|--.. .+|+.-- -.+..+..++.- ++++|-. ++..- ....+.+
T Consensus 506 eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~-rFle~~q~~~~~g~~n~~nse-------t~~~~~~~~~~~~L~~ 577 (1431)
T KOG1240|consen 506 EYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY-RFLELTQELRQAGMLNDPNSE-------TAPEQNYNTELQALHH 577 (1431)
T ss_pred hhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH-HHHHHHHHHHhcccccCcccc-------cccccccchHHHHHHH
Confidence 457788777777766666677764221 1111100 011122222222 2333222 22222 2345666
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCccc-cc
Q 002971 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFE-IT 159 (862)
Q Consensus 81 ~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~-l~ 159 (862)
.+...+..++.|+.|+||++=...+..++...-..-.+.-+++.|...|+|+|....++-+-.+..++---+ +. +.
T Consensus 578 ~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG---~rs~s 654 (1431)
T KOG1240|consen 578 TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG---WRSVS 654 (1431)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe---eeeHH
Confidence 777888999999999999999999888877654433333467999999999999988765444443321111 11 22
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHhhccccc---HHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhh
Q 002971 160 SHTLSKLLTALNECTEWGQVFILDALSRYKAAD---AREAENIVERVTPRLQHANCAVVLSAVKMILQQM 226 (862)
Q Consensus 160 ~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~---~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~ 226 (862)
.-.++-|...|.|..|...++.|+.|..++... .....++++.+.|+|-|.|.=|..+++..|....
T Consensus 655 eyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~ 724 (1431)
T KOG1240|consen 655 EYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIA 724 (1431)
T ss_pred HHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHH
Confidence 234566777889999999999999998776432 3345678899999999999988888887777543
No 87
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.53 E-value=0.022 Score=64.95 Aligned_cols=172 Identities=21% Similarity=0.257 Sum_probs=118.1
Q ss_pred HHHhHhccC----CCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcC-CCCHHHHhHHHHHhcCCCh--hhhHHHHHH
Q 002971 12 TDVVNCMQT----ENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQ-DPNPLIRALAVRTMGCIRV--DKITEYLCD 84 (862)
Q Consensus 12 ~~vv~l~~s----~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~-~~n~~ir~lALr~l~~i~~--~~~~~~l~~ 84 (862)
|-|....++ +|.++.+.+|+.+..+.--..+...--...|..-+. +|+|.||+.|.-.||.+.. ...++....
T Consensus 895 pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~t~ 974 (1128)
T COG5098 895 PVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEHTH 974 (1128)
T ss_pred HHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHHHH
Confidence 334445555 788899999999887754443333323333444444 8999999999999998653 566677777
Q ss_pred HHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHH
Q 002971 85 PLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLS 164 (862)
Q Consensus 85 ~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~ 164 (862)
.+.+-|.|.+.-|||++.|.+.-+.-... +.-.|....+..+|.|.|..+---|=..+.+++.++..-+ .-+-
T Consensus 975 yLyrrL~De~~~V~rtclmti~fLilagq--~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt~y-----n~fi 1047 (1128)
T COG5098 975 YLYRRLGDEDADVRRTCLMTIHFLILAGQ--LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNTMY-----NGFI 1047 (1128)
T ss_pred HHHHHhcchhhHHHHHHHHHHHHHHHccc--eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccchh-----hhhH
Confidence 78899999999999999999987765443 3334678899999999999988888888889988763211 1112
Q ss_pred HHHHHhccCChhHH---HHHHHHHhhccc
Q 002971 165 KLLTALNECTEWGQ---VFILDALSRYKA 190 (862)
Q Consensus 165 ~Ll~~l~~~~~w~q---~~iL~~L~~~~~ 190 (862)
.+...+...++-+| -.|+++|..+..
T Consensus 1048 difs~ls~~ae~g~e~fk~II~FLt~fI~ 1076 (1128)
T COG5098 1048 DIFSTLSSDAENGQEPFKLIIGFLTDFIS 1076 (1128)
T ss_pred HHHHHcCchhhcCCCcHHHHHHHHHHHHH
Confidence 23334433333333 357788887764
No 88
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.40 E-value=0.036 Score=57.46 Aligned_cols=130 Identities=18% Similarity=0.225 Sum_probs=82.5
Q ss_pred cCCCcchHHHHHHHHHHhcCCC-----CcHHHH----HHHHHHhhcCCCCHHHHhHHHHHhcCCC------hhhhHHHHH
Q 002971 19 QTENLELKKLVYLYLINYAKSQ-----PDLAIL----AVNTFVKDSQDPNPLIRALAVRTMGCIR------VDKITEYLC 83 (862)
Q Consensus 19 ~s~~~~~Kkl~Yl~l~~~~~~~-----~el~~L----~intl~kDl~~~n~~ir~lALr~l~~i~------~~~~~~~l~ 83 (862)
.+.|-+.|.=+..-+..+...+ ++...- +...+.+.++|.+..+...|+.+++.+. ....++.++
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4455555555666666665444 222222 2246668888888889999998888764 234567889
Q ss_pred HHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccch-HHHHHHhhcCCChhHHHHHHHHHHHHhhcC
Q 002971 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGF-LESLKDLISDNNPMVVANAVAALAEIEENS 151 (862)
Q Consensus 84 ~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~-~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 151 (862)
+.+.+.+.|++..||..|..|+..+.+..+ ... .. .+.+...+.++++.|...++..+..+...-
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~--~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~ 162 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCS-YSP--KILLEILSQGLKSKNPQVREECAEWLAIILEKW 162 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS--H----HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999776 111 24 678888899999999998888887776543
No 89
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.23 Score=58.47 Aligned_cols=190 Identities=14% Similarity=0.120 Sum_probs=123.3
Q ss_pred HHHHHhhcCCC-CHHHHhHHHHHhcC---CChhh-----hHHHHHHHHHhhhCC-CChHHHHHHHHHHHHHHhhccccc-
Q 002971 48 VNTFVKDSQDP-NPLIRALAVRTMGC---IRVDK-----ITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAELV- 116 (862)
Q Consensus 48 intl~kDl~~~-n~~ir~lALr~l~~---i~~~~-----~~~~l~~~v~~~l~d-~~~yVRk~A~~~l~kl~~~~p~~~- 116 (862)
.+.|..-|+.. +|..+--||.-||- +++.+ .++.++|.+.++|+| .++-+---|+-|+..++...|..+
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 45566666655 89999999998885 34444 347889999999999 788899999999999999999753
Q ss_pred --cccchHHHHHHhhcC-CChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccc--
Q 002971 117 --EDRGFLESLKDLISD-NNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAA-- 191 (862)
Q Consensus 117 --~~~~~~~~l~~lL~d-~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~-- 191 (862)
.+.+.++.+..-|.. .-.-|.=.++.+|..|....+..+++. ..+...+..|.-++--.|-+.|-+....+.+
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~A--G~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQA--GALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345677777654433 444566688999999988777655443 2233333344334555777777777766543
Q ss_pred --cHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhc-cCChHHHHHHH
Q 002971 192 --DAREAENIVERVTPRLQHANCAVVLSAVKMILQQMEL-ITSTDVVRNLC 239 (862)
Q Consensus 192 --~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~-~~~~~~~~~~~ 239 (862)
+..-.-+.+..+.++|++.+.=++-.+.-++.++.+. ...++.+.++|
T Consensus 327 sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~ 377 (1051)
T KOG0168|consen 327 SDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLC 377 (1051)
T ss_pred CccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHh
Confidence 2222334455667788877654444444444444322 23566666654
No 90
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=1.8 Score=50.94 Aligned_cols=133 Identities=18% Similarity=0.166 Sum_probs=85.5
Q ss_pred hccCCCcchHHHHHHHHHHhcCCCCcH-----HHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhh--------------
Q 002971 17 CMQTENLELKKLVYLYLINYAKSQPDL-----AILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDK-------------- 77 (862)
Q Consensus 17 l~~s~~~~~Kkl~Yl~l~~~~~~~~el-----~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~-------------- 77 (862)
+-.+.=++.||=+-+++.-+++...+. +--.+++|++|-. ||.+...||.+++.+-..+
T Consensus 31 vessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~--D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd 108 (970)
T KOG0946|consen 31 VESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYM--DPEIIKYALDTLLILTSHDDSPEVMDDSTQSDD 108 (970)
T ss_pred HhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccC--CHHHHHHHHHHHHHHHhcCcchhhcccchhhhH
Confidence 345677899999999999998876542 2346888999877 5678899999999875332
Q ss_pred ----hH------HHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccc-----cchHHHHHHhhcCCChhHHHHHHH
Q 002971 78 ----IT------EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED-----RGFLESLKDLISDNNPMVVANAVA 142 (862)
Q Consensus 78 ----~~------~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~-----~~~~~~l~~lL~d~d~~V~~~a~~ 142 (862)
++ +..+..+...+.+.+-|||+.|+--+-.+.+.-|--+.+ +.-+..+..+|.|...-+.-.|+.
T Consensus 109 ~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iL 188 (970)
T KOG0946|consen 109 LGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAIL 188 (970)
T ss_pred HHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHH
Confidence 11 123445555566667777777776666666655533221 123456666666666555556666
Q ss_pred HHHHHhhcC
Q 002971 143 ALAEIEENS 151 (862)
Q Consensus 143 ~l~~i~~~~ 151 (862)
+|+++.+..
T Consensus 189 lL~eL~k~n 197 (970)
T KOG0946|consen 189 LLSELVKDN 197 (970)
T ss_pred HHHHHHccC
Confidence 666665543
No 91
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.28 E-value=0.023 Score=50.04 Aligned_cols=67 Identities=19% Similarity=0.305 Sum_probs=55.8
Q ss_pred hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccc--cchHHHHHHhhcCCChhHHHHHH
Q 002971 75 VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAV 141 (862)
Q Consensus 75 ~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~a~ 141 (862)
..+-.+.++++|.+++.|+++-||-.|+.|++.+.+..++.+-. .+.++.|.+++.|.|+.|..+|-
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~ 89 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAE 89 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHH
Confidence 56677899999999999999999999999999999887655432 23567778899999999998773
No 92
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.23 E-value=0.0077 Score=40.86 Aligned_cols=30 Identities=33% Similarity=0.474 Sum_probs=25.5
Q ss_pred HHHHHHhhhCCCChHHHHHHHHHHHHHHhh
Q 002971 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDI 111 (862)
Q Consensus 82 l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~ 111 (862)
++|.+.+++.|++|.||+.|+.|+.++.+.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 467889999999999999999999998764
No 93
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.17 E-value=0.014 Score=45.48 Aligned_cols=49 Identities=31% Similarity=0.376 Sum_probs=37.1
Q ss_pred HHHHhHHHHHhcCCC--h----hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHH
Q 002971 60 PLIRALAVRTMGCIR--V----DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKL 108 (862)
Q Consensus 60 ~~ir~lALr~l~~i~--~----~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl 108 (862)
|.+|..|+.+||.+. . ....+.+++.+.++|.|+++.||.+|+.|+.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 567888888888765 1 234457778888888888889999888888654
No 94
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.16 E-value=0.26 Score=60.17 Aligned_cols=220 Identities=20% Similarity=0.222 Sum_probs=134.9
Q ss_pred HHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCCh----------hhhHHHHHHHHHhhhCC-CChHHHHHHHHHHHHHHhh
Q 002971 43 LAILAVNTFVKDSQDPNPLIRALAVRTMGCIRV----------DKITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDI 111 (862)
Q Consensus 43 l~~L~intl~kDl~~~n~~ir~lALr~l~~i~~----------~~~~~~l~~~v~~~l~d-~~~yVRk~A~~~l~kl~~~ 111 (862)
..--+..-+.--+.|+.+.||+.||.||+.+-. .-..||+.|.+..++.| ...+||-+=|-|+.++.+.
T Consensus 459 ~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t 538 (1431)
T KOG1240|consen 459 KLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT 538 (1431)
T ss_pred HHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH
Confidence 344577778888999999999999999987531 12348999999999999 8889998888888776431
Q ss_pred ------------------cccc--ccc-----------cchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccH
Q 002971 112 ------------------NAEL--VED-----------RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (862)
Q Consensus 112 ------------------~p~~--~~~-----------~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~ 160 (862)
+|+. ..+ ....+....||.|.++.|..+.+-.+..+|.-=++. .-.-
T Consensus 539 A~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~--ksND 616 (1431)
T KOG1240|consen 539 AYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE--KSND 616 (1431)
T ss_pred HHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc--cccc
Confidence 1221 111 012234457889999999888877777776421111 0011
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHh---hcc-cccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhh--ccCChHH
Q 002971 161 HTLSKLLTALNECTEWGQVFILDALS---RYK-AADAREAENIVERVTPRLQHANCAVVLSAVKMILQQME--LITSTDV 234 (862)
Q Consensus 161 ~~~~~Ll~~l~~~~~w~q~~iL~~L~---~~~-~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~--~~~~~~~ 234 (862)
-++.+|+..|++-++-+.....+-+. -|. ....+ +-++..+...|....++|+-.|..++-.+.. .+..+ .
T Consensus 617 ~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~s--eyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~-~ 693 (1431)
T KOG1240|consen 617 VILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVS--EYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKP-A 693 (1431)
T ss_pred chHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHH--HHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchH-H
Confidence 24788999999885556777777665 222 22211 2345555666777888998777766654421 12111 2
Q ss_pred HHHHHHhcccchhhcccCChhHHHHHHHHHHHHHhh
Q 002971 235 VRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQR 270 (862)
Q Consensus 235 ~~~~~~~~~~~L~~lls~~~~iry~aL~~l~~i~~~ 270 (862)
+.++.+.+.+ .|...+.=||+.++.-|..+.+.
T Consensus 694 v~~i~~~v~P---lL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 694 VKDILQDVLP---LLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred HHHHHHhhhh---heeCchHHHHHHHHHHHHHHHhh
Confidence 2222222221 11122333777777777666554
No 95
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=96.15 E-value=0.93 Score=47.93 Aligned_cols=234 Identities=13% Similarity=0.201 Sum_probs=113.8
Q ss_pred HHHhhhCCCChHHHHHHHHHHHHHHhhcc-ccccccchHHHHHHhhcC--CChhHHHHHHHHHHHHhhcCCCCcccccHH
Q 002971 85 PLQRCLKDDDPYVRKTAAICVAKLYDINA-ELVEDRGFLESLKDLISD--NNPMVVANAVAALAEIEENSSRPIFEITSH 161 (862)
Q Consensus 85 ~v~~~l~d~~~yVRk~A~~~l~kl~~~~p-~~~~~~~~~~~l~~lL~d--~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~ 161 (862)
.+...|++.++-+|.+|..++..+...-| +.+.. +-+..|.+.+.+ .|+.++..++.++..+..... +...
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~-~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~-----~~~~ 76 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSR-QEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN-----FSPE 76 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccH-HHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC-----CChh
Confidence 35677889999999999999998887655 33332 122333333222 355556555777766654321 1112
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHHHh
Q 002971 162 TLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKK 241 (862)
Q Consensus 162 ~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~ 241 (862)
....+++.+- ..+..+ +--.++.+.+.+++-.++. ...+.++.+...
T Consensus 77 ~~~~i~~~l~--------------~~~~~q-----------------~~~q~~R~~~~~ll~~l~~--~~~~~l~~~~~~ 123 (262)
T PF14500_consen 77 SAVKILRSLF--------------QNVDVQ-----------------SLPQSTRYAVYQLLDSLLE--NHREALQSMGDD 123 (262)
T ss_pred hHHHHHHHHH--------------HhCChh-----------------hhhHHHHHHHHHHHHHHHH--HhHHHHHhchhH
Confidence 2333333221 111100 0001112222222111111 011111111111
Q ss_pred cccchhhcc--cCChhHHHHHHHHHHHHHhhCh------hh---hhccceE-EEecCCCcHHHHHHHHH--HHHHhcC-c
Q 002971 242 MAPPLVTLL--SAEPEIQYVALRNINLIVQRRP------TI---LAHEIKV-FFCKYNDPIYVKMEKLE--IMIKLAS-D 306 (862)
Q Consensus 242 ~~~~L~~ll--s~~~~iry~aL~~l~~i~~~~p------~~---~~~~~~~-~~~l~~d~~~Ik~~~L~--lL~~l~~-~ 306 (862)
.+..++.+. .+||.---++.+.+..+.+..+ ++ +.-|..+ |.--.+||.-|.+.-|. +.-.|+. +
T Consensus 124 fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~ 203 (262)
T PF14500_consen 124 FVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP 203 (262)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH
Confidence 222223344 2566555555666666665544 11 2234443 33344666555555443 3333443 2
Q ss_pred CcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhH-hHHHHHHHHHHHH
Q 002971 307 RNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLER-AAERCISVLLELI 357 (862)
Q Consensus 307 ~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~-~~~~~v~~ll~ll 357 (862)
.=.+..+.-|++=+.+.....+.++.+.+..|+.+|+. ....++..+.+-|
T Consensus 204 ~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 204 LFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred hhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 22345666666666677778999999999999998864 2344444444443
No 96
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.15 E-value=0.034 Score=67.31 Aligned_cols=93 Identities=20% Similarity=0.257 Sum_probs=84.0
Q ss_pred CCCCHHHHhHHHHHhcCCC--hhhhHHHHHHHHHhhhC-CCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCC
Q 002971 56 QDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQRCLK-DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDN 132 (862)
Q Consensus 56 ~~~n~~ir~lALr~l~~i~--~~~~~~~l~~~v~~~l~-d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~ 132 (862)
...||.++..|-=++|++. +.++++.=.+.+...+. +++|.||-.++.|+.-+---.|.+++. |.+.++..|.|.
T Consensus 933 ~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~--~T~~Ly~rL~D~ 1010 (1251)
T KOG0414|consen 933 LFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEP--WTEHLYRRLRDE 1010 (1251)
T ss_pred cCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccch--hhHHHHHHhcCc
Confidence 5678999999999999876 78889888888888887 899999999999999999999999986 999999999999
Q ss_pred ChhHHHHHHHHHHHHhhc
Q 002971 133 NPMVVANAVAALAEIEEN 150 (862)
Q Consensus 133 d~~V~~~a~~~l~~i~~~ 150 (862)
++.|.-+|+..|..+.-+
T Consensus 1011 ~~~vRkta~lvlshLILn 1028 (1251)
T KOG0414|consen 1011 SPSVRKTALLVLSHLILN 1028 (1251)
T ss_pred cHHHHHHHHHHHHHHHHh
Confidence 999999999999876544
No 97
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=4.8 Score=49.23 Aligned_cols=241 Identities=22% Similarity=0.237 Sum_probs=124.3
Q ss_pred hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCC-ChhHHHHHHHHHHHHhhcCCC
Q 002971 75 VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDN-NPMVVANAVAALAEIEENSSR 153 (862)
Q Consensus 75 ~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~-d~~V~~~a~~~l~~i~~~~~~ 153 (862)
+|+++|.+++.+...++|.+..||-.||-++.|+....|-.+-+ ..+..+.++++-- ++..--.|+.+|.|++...
T Consensus 335 v~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-- 411 (1133)
T KOG1943|consen 335 VPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRG-- 411 (1133)
T ss_pred cHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC--
Confidence 46899999999999999999999999999999999888733222 2445555555532 3555557777888887543
Q ss_pred CcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcC-CChHHHHHHHHHHHHhhhccCCh
Q 002971 154 PIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQH-ANCAVVLSAVKMILQQMELITST 232 (862)
Q Consensus 154 ~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~-~n~aV~~eai~~i~~~~~~~~~~ 232 (862)
+ +.+..+..++- .|++.|. |. ..+-++ .+..|.=+|+-++-.+. .-.++
T Consensus 412 --l-Llps~l~dVvp-----------lI~kaL~-Yd--------------~~~G~~s~G~~VRDaAcY~~WAf~-Rays~ 461 (1133)
T KOG1943|consen 412 --L-LLPSLLEDVVP-----------LILKALH-YD--------------VRRGQHSVGQHVRDAACYVCWAFA-RAYSP 461 (1133)
T ss_pred --C-cchHHHHHHHH-----------HHHHHhh-hh--------------hhhcccccccchHHHHHHHHHHHH-hcCCh
Confidence 1 11111111111 1112221 10 001111 22223222222221111 11234
Q ss_pred HHHHHHHHhcccchh-h-cccCChhHHHHHHHHHHHHHhhChhh-----hhccceEEEecCCCcHHHHHH---HHHHHHH
Q 002971 233 DVVRNLCKKMAPPLV-T-LLSAEPEIQYVALRNINLIVQRRPTI-----LAHEIKVFFCKYNDPIYVKME---KLEIMIK 302 (862)
Q Consensus 233 ~~~~~~~~~~~~~L~-~-lls~~~~iry~aL~~l~~i~~~~p~~-----~~~~~~~~~~l~~d~~~Ik~~---~L~lL~~ 302 (862)
+.++.+..++...|+ . +...+-|+|+.|--++...+.+.++. +..+. |..++..+ =+++-..
T Consensus 462 ~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~--------dy~sV~~rsNcy~~l~~~ 533 (1133)
T KOG1943|consen 462 SDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTI--------DYFSVTNRSNCYLDLCVS 533 (1133)
T ss_pred hhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhc--------chhhhhhhhhHHHHHhHH
Confidence 444444444444443 2 33678899999999999998886543 11111 11111111 1111111
Q ss_pred hcC-cCcHHHHHHHHHHh-hhhccHHHHHHHHHHHHHHHHhhhHhHH-HHHHHHHHH
Q 002971 303 LAS-DRNIDQVLLEFKEY-ATEVDVDFVRKAVRAIGRCAIKLERAAE-RCISVLLEL 356 (862)
Q Consensus 303 l~~-~~Nv~~Iv~eL~~y-~~~~d~~~~~~~i~~I~~la~k~~~~~~-~~v~~ll~l 356 (862)
++. +.=.+.++++|..- +..=|..++..+..++.+++...++... .++.-+++.
T Consensus 534 ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~ 590 (1133)
T KOG1943|consen 534 IAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDS 590 (1133)
T ss_pred HHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhh
Confidence 111 11123344444322 3334777888888888888887766433 334444443
No 98
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.11 E-value=0.049 Score=62.17 Aligned_cols=132 Identities=18% Similarity=0.250 Sum_probs=110.4
Q ss_pred CCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC-----hhhhHH-------HHHHHHHh
Q 002971 21 ENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-----VDKITE-------YLCDPLQR 88 (862)
Q Consensus 21 ~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~-----~~~~~~-------~l~~~v~~ 88 (862)
+|..--|-+-+++..+.+-.|.+++---+.+.+=|.+..-..||.-+...+++. .++|.+ .++.-+..
T Consensus 274 ~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~E 353 (1128)
T COG5098 274 PDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVE 353 (1128)
T ss_pred ccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHH
Confidence 555555778889999999999999999999999999999999999999999864 455665 66777788
Q ss_pred hhCCCChHHHHHHHHHHHHHHhhcccccc-ccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCC
Q 002971 89 CLKDDDPYVRKTAAICVAKLYDINAELVE-DRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (862)
Q Consensus 89 ~l~d~~~yVRk~A~~~l~kl~~~~p~~~~-~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~ 152 (862)
-+.|.+||+|-||+..+.|+|..+.-... ...++......|.|+...|..+|+.++..+.-..|
T Consensus 354 Rl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 354 RLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred HhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 88999999999999999999997665543 23577778889999999999999999988765544
No 99
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.11 E-value=0.53 Score=54.44 Aligned_cols=120 Identities=19% Similarity=0.227 Sum_probs=82.8
Q ss_pred CCHHHHhHHHHHhcCCC--hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChh
Q 002971 58 PNPLIRALAVRTMGCIR--VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPM 135 (862)
Q Consensus 58 ~n~~ir~lALr~l~~i~--~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~ 135 (862)
.++-.+-||-.++...- -|++.+.-+..+..++.|.+.-||+.|+-.+..+.+-+|+.+.. ..+.|.+||...++.
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k--vaDvL~QlL~tdd~~ 111 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK--VADVLVQLLQTDDPV 111 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH--HHHHHHHHTT---HH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH--HHHHHHHHHhcccHH
Confidence 46778888888888763 58999999999999999999999999999999999999999874 899999999987777
Q ss_pred HHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhc---cCChhHHHHHHHHHh
Q 002971 136 VVANAVAALAEIEENSSRPIFEITSHTLSKLLTALN---ECTEWGQVFILDALS 186 (862)
Q Consensus 136 V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~---~~~~w~q~~iL~~L~ 186 (862)
.+..+=.+|.++...++. ..+.-|++.+. .-++-..-++|++|.
T Consensus 112 E~~~v~~sL~~ll~~d~k-------~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 112 ELDAVKNSLMSLLKQDPK-------GTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HHHHHHHHHHHHHHH-HH-------HHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcH-------HHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 666666666666655543 23455555553 446666677787775
No 100
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.81 E-value=0.41 Score=51.87 Aligned_cols=156 Identities=15% Similarity=0.228 Sum_probs=102.8
Q ss_pred HHHHHHHH-HhhhhccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCcccHHHHHH
Q 002971 310 DQVLLEFK-EYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIA 388 (862)
Q Consensus 310 ~~Iv~eL~-~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~ 388 (862)
..+++.|. ..++..|..+|+.+++++|-++.--...+..++..+...++.+.+.+.-.++..+.+++..|+-
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~------- 97 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGI------- 97 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCc-------
Confidence 37777776 5678889999999999999999887788889999999999766666777777888888776641
Q ss_pred HHHHhhccCCchHHHHHHHHHHhhcccccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHh
Q 002971 389 TLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNN 468 (862)
Q Consensus 389 ~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~~~~~~~~~i~~~l~~ 468 (862)
+.++....+. .-.....+++.+.+-+..+++++|..+...++||+...--.+....+..++-.
T Consensus 98 ---~~~~~~~~~~--------------~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~ 160 (298)
T PF12719_consen 98 ---DIFDSESDND--------------ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLL 160 (298)
T ss_pred ---hhccchhccC--------------ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 1121111111 11124456666666666678899999999999998865432113455554433
Q ss_pred cc--cCCCChHHHHHHHHHHHHh
Q 002971 469 AT--VETDNPDLRDRAYIYWRLL 489 (862)
Q Consensus 469 ~~--~~s~~~dvrdRA~~y~~ll 489 (862)
.. ....|..+||-=..+....
T Consensus 161 yF~p~t~~~~~LrQ~L~~Ffp~y 183 (298)
T PF12719_consen 161 YFNPSTEDNQRLRQCLSVFFPVY 183 (298)
T ss_pred HcCcccCCcHHHHHHHHHHHHHH
Confidence 22 1234566777444444333
No 101
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.74 E-value=0.0091 Score=46.58 Aligned_cols=53 Identities=32% Similarity=0.427 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHhhccccccc--cchHHHHHHhhcCCChhHHHHHHHHHHHH
Q 002971 95 PYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAEI 147 (862)
Q Consensus 95 ~yVRk~A~~~l~kl~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~a~~~l~~i 147 (862)
|.||+.|+.++..+....++.... ...++.|..+|+|+++.|..+|+.+|..|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 679999999999877666665542 24678888999999999999999888653
No 102
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=95.68 E-value=3 Score=49.96 Aligned_cols=223 Identities=18% Similarity=0.228 Sum_probs=127.2
Q ss_pred hhhHHHHHHHHHhhhCC-CChHHHHHHHHHHHHHHhh---ccccccccchHHHHHH-hhcCCChhHHHHHHHHHHHHhhc
Q 002971 76 DKITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDI---NAELVEDRGFLESLKD-LISDNNPMVVANAVAALAEIEEN 150 (862)
Q Consensus 76 ~~~~~~l~~~v~~~l~d-~~~yVRk~A~~~l~kl~~~---~p~~~~~~~~~~~l~~-lL~d~d~~V~~~a~~~l~~i~~~ 150 (862)
.+....++..+...+.+ ..|..--+|..++.|+... .|+.... |...... +..|.-+.+..+|+.+++..+
T Consensus 444 dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~~~~~ki~a~~~~~~~~-- 519 (1005)
T KOG2274|consen 444 DDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDVPPPVKISAVRAFCGYC-- 519 (1005)
T ss_pred HHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCCCCchhHHHHHHHHhcc--
Confidence 34555666666666665 6676666999999988765 3444432 4444433 445778889999999998887
Q ss_pred CCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHH-----hhcCC-ChHHHHHHHHHHHH
Q 002971 151 SSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTP-----RLQHA-NCAVVLSAVKMILQ 224 (862)
Q Consensus 151 ~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~-----~l~~~-n~aV~~eai~~i~~ 224 (862)
+++.+..+.+.++.-|.....+.+.-.-.-+++.|...+.-|++.+...=+.+.| .++.+ ++-|.-.+--++-.
T Consensus 520 ~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~e 599 (1005)
T KOG2274|consen 520 KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEE 599 (1005)
T ss_pred CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 3444566677777777666666666666666777766555555444322222222 23333 34222222222222
Q ss_pred hhhccCChHHHHHHHHhcccchhhccc-C----ChhHHHHHHHHHHHHHhhChhhhh----cc-c-eEEEe-cCCCcHHH
Q 002971 225 QMELITSTDVVRNLCKKMAPPLVTLLS-A----EPEIQYVALRNINLIVQRRPTILA----HE-I-KVFFC-KYNDPIYV 292 (862)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~L~~lls-~----~~~iry~aL~~l~~i~~~~p~~~~----~~-~-~~~~~-l~~d~~~I 292 (862)
++. ...-...++.+.+|.|+..|. . .+.....+++-|..++...|.-+. .+ . .+..| +.+||...
T Consensus 600 l~q---~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~t 676 (1005)
T KOG2274|consen 600 LLQ---IAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHET 676 (1005)
T ss_pred HHH---HHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHH
Confidence 211 111122344567788887773 2 367899999999988877653221 11 1 12223 55666555
Q ss_pred HHHHHHHHHHhcC
Q 002971 293 KMEKLEIMIKLAS 305 (862)
Q Consensus 293 k~~~L~lL~~l~~ 305 (862)
-..+=|.|-.+.+
T Consensus 677 lQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 677 LQNATECLRALIS 689 (1005)
T ss_pred HHhHHHHHHHHHh
Confidence 5555566655544
No 103
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.67 E-value=2 Score=54.17 Aligned_cols=265 Identities=14% Similarity=0.197 Sum_probs=154.2
Q ss_pred ccchHHHh----HhccCCCcchHHHHHHHHHHhcCCCCc------HHHHHHHH--HHhhcCCCCHHHHhHHHHHhcCCC-
Q 002971 8 SSLFTDVV----NCMQTENLELKKLVYLYLINYAKSQPD------LAILAVNT--FVKDSQDPNPLIRALAVRTMGCIR- 74 (862)
Q Consensus 8 s~lf~~vv----~l~~s~~~~~Kkl~Yl~l~~~~~~~~e------l~~L~int--l~kDl~~~n~~ir~lALr~l~~i~- 74 (862)
+.+|-+|. ..+.++-...|--..|++.-+....|- +--+-.-. .+.|.++.--..--.|.++++++.
T Consensus 1034 d~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~v 1113 (1702)
T KOG0915|consen 1034 DEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCV 1113 (1702)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444554 467888899999999999998876542 11112222 245665433333344566776653
Q ss_pred ----------hhhhHHHHHHHHH-hhhCCCChHHHHHHHHHHHHHHhhccccccc--cchHHHHHHhhcCCChhHHHHHH
Q 002971 75 ----------VDKITEYLCDPLQ-RCLKDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAV 141 (862)
Q Consensus 75 ----------~~~~~~~l~~~v~-~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~a~ 141 (862)
..+.+..+.|.+. +.+.++-+-|||-++-.+.++.+.++..+.. +++++.+.++.+.-.|.|+.-..
T Consensus 1114 r~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls 1193 (1702)
T KOG0915|consen 1114 RICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLS 1193 (1702)
T ss_pred hhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHH
Confidence 2355566666653 4455889999999999999999998876653 23556666666677788764332
Q ss_pred HHHHHHhhcC----------CCCccc------------ccHHHHHHHHHHhcc---------CChhHHHHHHHHHhhccc
Q 002971 142 AALAEIEENS----------SRPIFE------------ITSHTLSKLLTALNE---------CTEWGQVFILDALSRYKA 190 (862)
Q Consensus 142 ~~l~~i~~~~----------~~~~~~------------l~~~~~~~Ll~~l~~---------~~~w~q~~iL~~L~~~~~ 190 (862)
.=+.++.... ..+.|+ ...+.++++++.+.. |+-+...-..|+.....|
T Consensus 1194 ~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP 1273 (1702)
T KOG0915|consen 1194 LRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTP 1273 (1702)
T ss_pred HhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCc
Confidence 2223332210 111121 112223333333321 233333333333333333
Q ss_pred ccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhcccCChhHHHHHHHHHHHHHhh
Q 002971 191 ADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQR 270 (862)
Q Consensus 191 ~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~lls~~~~iry~aL~~l~~i~~~ 270 (862)
...+++..+.+.++.+|++|....+.+..++..+ ++++.-..+.... +.-++.+++-.+-++..++..|...
T Consensus 1274 ----~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~-Ss~dq~qKLie~~---l~~~l~k~es~~siscatis~Ian~ 1345 (1702)
T KOG0915|consen 1274 ----YSGKLLRALFPGAKDRNESVRKAFASAMGYLAKF-SSPDQMQKLIETL---LADLLGKDESLKSISCATISNIANY 1345 (1702)
T ss_pred ----chhHHHHHHhhccccccHHHHHHHHHHHHHHHhc-CChHHHHHHHHHH---HHHHhccCCCccchhHHHHHHHHHh
Confidence 3347788899999999999999999999988653 4554333322221 2334444333336666666668888
Q ss_pred Chhhhhccce
Q 002971 271 RPTILAHEIK 280 (862)
Q Consensus 271 ~p~~~~~~~~ 280 (862)
.++.+.+|..
T Consensus 1346 s~e~Lkn~as 1355 (1702)
T KOG0915|consen 1346 SQEMLKNYAS 1355 (1702)
T ss_pred hHHHHHhhHH
Confidence 8888887754
No 104
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=95.58 E-value=0.19 Score=60.75 Aligned_cols=196 Identities=17% Similarity=0.189 Sum_probs=138.7
Q ss_pred hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcc-ccccc-cchHH-HHHHhhcCCChhHHHHHHHHHHHHhhcCC
Q 002971 76 DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA-ELVED-RGFLE-SLKDLISDNNPMVVANAVAALAEIEENSS 152 (862)
Q Consensus 76 ~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p-~~~~~-~~~~~-~l~~lL~d~d~~V~~~a~~~l~~i~~~~~ 152 (862)
.++..-+.+.+...+.|+++-=|+.|+..+.++..--+ +.... .+.+- .+.-.+.|.|..|+..|...|..|+...+
T Consensus 248 ~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr 327 (815)
T KOG1820|consen 248 VDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLR 327 (815)
T ss_pred hhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcc
Confidence 35556677888899999999999999999999987655 22221 12222 33445679999999999999999998766
Q ss_pred CCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCCh
Q 002971 153 RPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITST 232 (862)
Q Consensus 153 ~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~ 232 (862)
..........+..++..+.+--+.+.-.++.++..+.-.. -...+.+.+...+++.|+.+.-+|..++-.++......
T Consensus 328 ~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~--~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 328 PLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNST--PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred hhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence 5555566666777888887777777777777776665422 24567888899999999999999887776654433211
Q ss_pred HHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhChh
Q 002971 233 DVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPT 273 (862)
Q Consensus 233 ~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~ 273 (862)
..-+.....+++.++... .++.++|-+++.++.-+...+.+
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhH
Confidence 111112223455555666 46889999999999999887653
No 105
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.48 E-value=9.5 Score=48.73 Aligned_cols=200 Identities=14% Similarity=0.136 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHh--cCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhh-hHhHHHHHHHHHHHHh---hhcch
Q 002971 290 IYVKMEKLEIMIKL--ASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKL-ERAAERCISVLLELIK---IKVNY 363 (862)
Q Consensus 290 ~~Ik~~~L~lL~~l--~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~-~~~~~~~v~~ll~ll~---~~~~~ 363 (862)
.+++..--++++.| +.++-+-.|+.+|..-+...+.++|.+++.-+|++-... ...++.|-++...+|. .....
T Consensus 236 ~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~ 315 (1266)
T KOG1525|consen 236 SSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVE 315 (1266)
T ss_pred cchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChh
Confidence 45666667777776 445556667778877777888899999999999865432 2222334444444443 34456
Q ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHhhccCCchHHHHHHHHHHhh--cccc-cCCHHHHHHHHhhhCCCCCHHHHH
Q 002971 364 VVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGE--YAER-IDNADELLESFLESFPEEPAQVQL 440 (862)
Q Consensus 364 v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGE--y~~~-i~~~~~~l~~~~~~~~~e~~~v~~ 440 (862)
|.-+++....+++.++|+..+.....+.-...+. +++.+....-+++. .... ....++++....++..+-...||.
T Consensus 316 vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~-D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~ 394 (1266)
T KOG1525|consen 316 VRMECVESIKQCLLNNPSIAKASTILLALRERDL-DEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRK 394 (1266)
T ss_pred hhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcC-ChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHH
Confidence 8889999999999999987665544333222233 23322111111111 1110 011223788888888888999999
Q ss_pred HHHHHHHHHhhcC---CCC-------------------------ChHHHHHHHHHhcccCCCChHHHHHHHHHHHHhcC
Q 002971 441 QLLTATVKLFLKK---PTE-------------------------GPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLST 491 (862)
Q Consensus 441 ~iLta~~Kl~~~~---~~~-------------------------~~~~~i~~~l~~~~~~s~~~dvrdRA~~y~~ll~~ 491 (862)
+.+..++++|.+. .++ +.+..+..+|..+. -..+++.|+|-.-.+.++..
T Consensus 395 ~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L-~P~~l~~q~Rmk~l~~~l~~ 472 (1266)
T KOG1525|consen 395 QAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYL-VPYPLSTQERMKHLYQLLAG 472 (1266)
T ss_pred HHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHhc
Confidence 9999999999851 100 12344556666544 34678899998888888864
No 106
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.45 E-value=0.35 Score=55.11 Aligned_cols=226 Identities=14% Similarity=0.257 Sum_probs=109.2
Q ss_pred chHHHHHHHHHHhcCCCCcHHH----HHHHHHHh-hcCCCCHHHHhHHHHHhcCCChh----hhHHHHHHHHHhhh-CCC
Q 002971 24 ELKKLVYLYLINYAKSQPDLAI----LAVNTFVK-DSQDPNPLIRALAVRTMGCIRVD----KITEYLCDPLQRCL-KDD 93 (862)
Q Consensus 24 ~~Kkl~Yl~l~~~~~~~~el~~----L~intl~k-Dl~~~n~~ir~lALr~l~~i~~~----~~~~~l~~~v~~~l-~d~ 93 (862)
..+++++++...+..-+++..+ -.++.+.+ -+...++..|-.|++.+|.+.+. +..+.+...+...+ ...
T Consensus 163 ~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~ 242 (415)
T PF12460_consen 163 QQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSE 242 (415)
T ss_pred ccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccC
Confidence 5667777777776655544322 12223332 33445688888888888876543 22333333343333 333
Q ss_pred ChHHHHHHHHHH-----HHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCccc-ccHHHHHHHH
Q 002971 94 DPYVRKTAAICV-----AKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFE-ITSHTLSKLL 167 (862)
Q Consensus 94 ~~yVRk~A~~~l-----~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~-l~~~~~~~Ll 167 (862)
.+-.|..++..+ +-+.|.+|.... +.+.+.++|.|.+ +-..|..++.-+....+ .... -.+..++-|.
T Consensus 243 ~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~---~~~~L~~lL~~~~--~g~~aA~~f~il~~d~~-~~l~~~~~a~vklLy 316 (415)
T PF12460_consen 243 DSELRPQALEILIWITKALVMRGHPLATE---LLDKLLELLSSPE--LGQQAAKAFGILLSDSD-DVLNKENHANVKLLY 316 (415)
T ss_pred CcchhHHHHHHHHHHHHHHHHcCCchHHH---HHHHHHHHhCChh--hHHHHHHHHhhHhcCcH-HhcCccccchhhhHH
Confidence 444455554444 234455665443 7777878887733 22233333433332211 1100 0111122221
Q ss_pred HHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchh
Q 002971 168 TALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLV 247 (862)
Q Consensus 168 ~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~ 247 (862)
+ |-. ...++..+....+..+..+.-....++.+++..++.+-...+ ...+.|.|+
T Consensus 317 k---------QR~---------------F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~-l~~LlPLLl 371 (415)
T PF12460_consen 317 K---------QRF---------------FTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPE-LPTLLPLLL 371 (415)
T ss_pred h---------HHH---------------HHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHH-HHHHHHHHH
Confidence 1 110 011222222223333322211122222222233332222222 234566666
Q ss_pred hccc-CChhHHHHHHHHHHHHHhhChhhhhccce
Q 002971 248 TLLS-AEPEIQYVALRNINLIVQRRPTILAHEIK 280 (862)
Q Consensus 248 ~lls-~~~~iry~aL~~l~~i~~~~p~~~~~~~~ 280 (862)
.-|+ .++++++.+|+++..++...|+++.+|+.
T Consensus 372 qsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~ 405 (415)
T PF12460_consen 372 QSLSLPDADVLLSSLETLKMILEEAPELISEHLS 405 (415)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 6554 67889999999999999999999988865
No 107
>PF08752 COP-gamma_platf: Coatomer gamma subunit appendage platform subdomain; InterPro: IPR014863 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal appendage domain of the gamma subunit of coatomer complexes. The appendage domain of the gamma coatomer subunit has a similar overall structural fold to the appendage domain of clathrin adaptors, and can also share the same motif-based cargo recognition and accessory factor recruitment mechanisms. The coatomer gamma subunit appendage domain contains a protein-protein interaction site and a second proposed binding site that interacts with the alpha, beta, epsilon COPI subcomplex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0005798 Golgi-associated vesicle; PDB: 1PZD_A 1R4X_A.
Probab=95.44 E-value=0.022 Score=54.18 Aligned_cols=109 Identities=14% Similarity=0.124 Sum_probs=67.1
Q ss_pred cccCCCCCceE-EEEEEEeeCCeeEEEEEEEec-CCCCcccceeeecccccCcccCCCCCCCcCCCCCeeeEEEeeeecC
Q 002971 638 VLPASTGQGLQ-IGAELTRQDGQVFYSMLFENN-TQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQ 715 (862)
Q Consensus 638 l~~~~~~~gL~-I~~~~~~~~~~~~l~l~~~N~-s~~~it~f~~q~~~n~~gl~~~~~~~~~~l~pg~~~~~~i~i~~~~ 715 (862)
|.++.....+. |++-| ..|+.+++.++|+ .++.+++.++++.....++......++++|+||+...+++-+....
T Consensus 30 LTE~EtEY~V~~vKHiF---~~hiVlQF~v~NTL~dq~LenV~V~~~~~~~~~~~~~~ipi~~L~~~~~~~~yV~l~~~~ 106 (151)
T PF08752_consen 30 LTESETEYVVSCVKHIF---AEHIVLQFNVTNTLNDQVLENVSVVLEPSEEEFEEVFIIPIPSLPYNEPGSCYVVLKRPP 106 (151)
T ss_dssp -S-TTSSEEEEEEEEE----SSEEEEEEEEEE--TTEEEEEEEEEEEESSS--EEEEEE-EEEE-CT--EEEEEEEE-SS
T ss_pred ccCcccEEEEEEEEEEe---cccEEEEEEEeeccCceeeeeEEEEEecCCceEEEEEEEEhhhCCCCCCeeEEEEEEeCC
Confidence 34445556666 88888 4799999999999 7899999999998765457776667888999999999999888743
Q ss_pred CCCC--CCCCcceEEEEecCCC-----CeEEEEeccccccc
Q 002971 716 NMSA--GPPSSLLQVAVKNNQQ-----PVWYFNDKISLHVL 749 (862)
Q Consensus 716 ~~~~--~~~~~~l~~~~k~~~~-----~~~~~~l~~Pl~~l 749 (862)
+... ....+.|.|.++.-.+ ..-.|..++|+..+
T Consensus 107 ~~~~~~~~f~~~LkF~vke~Dp~tge~~~~GyeDEY~lEdl 147 (151)
T PF08752_consen 107 PGSIPSGTFSNTLKFTVKEVDPSTGEPEDEGYEDEYQLEDL 147 (151)
T ss_dssp STT---EEEEEEEEEEEEEB-TTT--B-S--EEEEEE---E
T ss_pred CCCceeeeEEeEEEEEEEeecCCCCCcCCCCccceEEeccE
Confidence 3222 2456678898876111 01366677776554
No 108
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.41 E-value=4.5 Score=46.12 Aligned_cols=180 Identities=16% Similarity=0.224 Sum_probs=107.4
Q ss_pred cHHHHHHHHHHhhhhc-cHHHHHHHHHHHHHHHHhhhHh--HHHHHHHHHHHH-hhhcchhHHH---HHH-HHHHHHHhC
Q 002971 308 NIDQVLLEFKEYATEV-DVDFVRKAVRAIGRCAIKLERA--AERCISVLLELI-KIKVNYVVQE---AII-VIKDIFRRY 379 (862)
Q Consensus 308 Nv~~Iv~eL~~y~~~~-d~~~~~~~i~~I~~la~k~~~~--~~~~v~~ll~ll-~~~~~~v~~e---~i~-~l~~i~~~~ 379 (862)
+...+++++.+.+... +...+..+.+.++.++.|++.. .+..++.+..-+ .......... +|. ..+-++.++
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 5667899998887654 4556666778899999997554 344455554444 1111222222 222 335555554
Q ss_pred cccHHHHHHHHHHhhccCCchH-HHHHHHHHHhhcccccCC---H-----------HHHHHHHhhhCCCCCHHHHHHHHH
Q 002971 380 PNTYESIIATLCESLDTLDEPE-AKASMIWIIGEYAERIDN---A-----------DELLESFLESFPEEPAQVQLQLLT 444 (862)
Q Consensus 380 p~~~~~~i~~L~~~l~~~~~~~-~~~~~~wilGEy~~~i~~---~-----------~~~l~~~~~~~~~e~~~v~~~iLt 444 (862)
.......+.+|++.+.+-+... +-.+.--+++++.+.... + ..++..+++.|...+.+.|...|+
T Consensus 266 ~~~~~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ 345 (415)
T PF12460_consen 266 HPLATELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLT 345 (415)
T ss_pred CchHHHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHH
Confidence 4445566778888776522111 223334555664333221 1 245566777888777789999999
Q ss_pred HHHHHhhcCCCC----ChHHHHHHHHHhcccCCCChHHHHHHHHHHHHh
Q 002971 445 ATVKLFLKKPTE----GPQQMIQVVLNNATVETDNPDLRDRAYIYWRLL 489 (862)
Q Consensus 445 a~~Kl~~~~~~~----~~~~~i~~~l~~~~~~s~~~dvrdRA~~y~~ll 489 (862)
|+.-+....|.+ +...++.-+++. . +..|.+++--+.+....+
T Consensus 346 ALs~ll~~vP~~vl~~~l~~LlPLLlqs-L-~~~~~~v~~s~L~tL~~~ 392 (415)
T PF12460_consen 346 ALSHLLKNVPKSVLLPELPTLLPLLLQS-L-SLPDADVLLSSLETLKMI 392 (415)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHH
Confidence 999999988853 134445555553 3 567788887776665444
No 109
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=95.40 E-value=0.13 Score=51.52 Aligned_cols=102 Identities=15% Similarity=0.180 Sum_probs=74.0
Q ss_pred HHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHH--HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHH
Q 002971 48 VNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE--YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESL 125 (862)
Q Consensus 48 intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~--~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l 125 (862)
.+.+.+-+.+++..+|-+|++.+..+-..-++. ..+|.+.-+..|+++++|++|...+..+++++|+.+.. .+.+-+
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~-~~~~gi 88 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES-RYSEGI 88 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH-HHHHHH
Confidence 345666778999999999999999876555553 45678888999999999999999999999999998864 344433
Q ss_pred HH------hh-cCCChhH---HHHHHHHHHHHhhc
Q 002971 126 KD------LI-SDNNPMV---VANAVAALAEIEEN 150 (862)
Q Consensus 126 ~~------lL-~d~d~~V---~~~a~~~l~~i~~~ 150 (862)
+. .+ .|..... ..+.+..++++...
T Consensus 89 ~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~ 123 (187)
T PF12830_consen 89 RLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRS 123 (187)
T ss_pred HHHHHHHHHhcCCccccccccchHHHHHHHHHHhc
Confidence 32 22 2322222 55666667777663
No 110
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.52 E-value=3.1 Score=53.67 Aligned_cols=225 Identities=20% Similarity=0.218 Sum_probs=121.5
Q ss_pred HHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC----hhhhHHHHHHHHHhhhCC-CChHHHHHHHHHHHHHHhhcccccc
Q 002971 43 LAILAVNTFVKDSQDPNPLIRALAVRTMGCIR----VDKITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAELVE 117 (862)
Q Consensus 43 l~~L~intl~kDl~~~n~~ir~lALr~l~~i~----~~~~~~~l~~~v~~~l~d-~~~yVRk~A~~~l~kl~~~~p~~~~ 117 (862)
+--+..--+..++..+||..|+.|-.+++.+. .+..+-.+.....+-+.+ .+|+-|---.++++.++|..-....
T Consensus 873 v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s 952 (2067)
T KOG1822|consen 873 VRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGS 952 (2067)
T ss_pred HHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCC
Confidence 44455555678999999999999988888753 223333333334444555 6666666667777777776555544
Q ss_pred ccchHH---HHHHhhcCCCh-hHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccH
Q 002971 118 DRGFLE---SLKDLISDNNP-MVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADA 193 (862)
Q Consensus 118 ~~~~~~---~l~~lL~d~d~-~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~ 193 (862)
...+.. .+..+-.|+++ .|...++.++..|.....+-++.+..+.+. ++..+--..|...+.+.+...+..-.+.
T Consensus 953 ~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tls-l~~~lLls~p~~~~ev~q~~~R~~~~~~ 1031 (2067)
T KOG1822|consen 953 GQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLS-LCLKLLLSVPTSHVEVHQCYNRCFNGDD 1031 (2067)
T ss_pred chhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHH-HHHHHcCCCCcchhhhhhhhccccccch
Confidence 333433 56666778654 888999999998877655444444443333 3333322333344444444433221111
Q ss_pred HHHHHHHHHH------------------------HHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhc
Q 002971 194 REAENIVERV------------------------TPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTL 249 (862)
Q Consensus 194 ~~~~~il~~v------------------------~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~l 249 (862)
.+. .++..+ .-.+.|.++-+--++++++-++. ... |... . ...++..|+.+
T Consensus 1032 ~~~-alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlh-lFa-pr~~-n-~~~lV~~L~~~ 1106 (2067)
T KOG1822|consen 1032 DED-ALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLH-LFA-PRHV-N-LDSLVLQLCSL 1106 (2067)
T ss_pred hHH-HHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHH-hhc-chhc-c-HHHHHHHHHHH
Confidence 110 111111 11245667777778888876652 111 1110 0 11233445555
Q ss_pred cc-CChhHHHHHHHHHHHHHhhChh
Q 002971 250 LS-AEPEIQYVALRNINLIVQRRPT 273 (862)
Q Consensus 250 ls-~~~~iry~aL~~l~~i~~~~p~ 273 (862)
++ +.--+|-..+.++..++++.-.
T Consensus 1107 l~s~~~i~r~~~~~clrql~~Re~s 1131 (2067)
T KOG1822|consen 1107 LSSSYLILRRASFSCLRQLVQREAS 1131 (2067)
T ss_pred hcchhhhhhhhHHhhhhHHhHHHHH
Confidence 54 3333445556666666666543
No 111
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=94.47 E-value=2.5 Score=50.78 Aligned_cols=88 Identities=19% Similarity=0.194 Sum_probs=69.0
Q ss_pred HHHHhHHHHHhcCCC----hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccccc-ccchHHHHHHhhcCCCh
Q 002971 60 PLIRALAVRTMGCIR----VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE-DRGFLESLKDLISDNNP 134 (862)
Q Consensus 60 ~~ir~lALr~l~~i~----~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~-~~~~~~~l~~lL~d~d~ 134 (862)
.-++-.|++.+-++- ...+.+...-.++.+.+|+-.-|||+++-++.++....|-.+. ...|+..+..+++|.+.
T Consensus 591 ~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es 670 (1529)
T KOG0413|consen 591 APVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTES 670 (1529)
T ss_pred cccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHH
Confidence 345555666655543 3556677677788888999889999999999999999997762 23699999999999999
Q ss_pred hHHHHHHHHHHHH
Q 002971 135 MVVANAVAALAEI 147 (862)
Q Consensus 135 ~V~~~a~~~l~~i 147 (862)
.|...|...+...
T Consensus 671 ~v~e~a~~~i~k~ 683 (1529)
T KOG0413|consen 671 DVTEHARKLIMKV 683 (1529)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877665
No 112
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.46 E-value=4.4 Score=50.13 Aligned_cols=219 Identities=16% Similarity=0.155 Sum_probs=126.5
Q ss_pred CCCcccchHHHhHhccCCCcchHHHHHHHHHH------hcCCCCcHHHHHHHHHH-hhcCCCCHHHHhHHHHHhcCCC--
Q 002971 4 GKDVSSLFTDVVNCMQTENLELKKLVYLYLIN------YAKSQPDLAILAVNTFV-KDSQDPNPLIRALAVRTMGCIR-- 74 (862)
Q Consensus 4 G~dvs~lf~~vv~l~~s~~~~~Kkl~Yl~l~~------~~~~~~el~~L~intl~-kDl~~~n~~ir~lALr~l~~i~-- 74 (862)
+.|+...+.+.+...++..- ..+.-+.+++. ++...++-.+-..+++. .+.++.+.-+|.-|-|.|..+.
T Consensus 606 ~~dv~~~l~~s~~e~as~~~-~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~ 684 (1176)
T KOG1248|consen 606 PTDVVGSLKDSAGELASDLD-ESVASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSS 684 (1176)
T ss_pred cHHHHHHHHHHHHhHhccch-hhhhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcC
Confidence 45677777777776554331 22222222222 23344443333444444 4555668888888777665543
Q ss_pred ------hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcc----ccccccchHHHHHHhhcCCChhHHHHHHHHH
Q 002971 75 ------VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA----ELVEDRGFLESLKDLISDNNPMVVANAVAAL 144 (862)
Q Consensus 75 ------~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p----~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l 144 (862)
...-++++...+.+.+.+.+.+.|+.++-|+..+|+..| +.+.. .++.+.-+++|.|..-..+|+.+|
T Consensus 685 ~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k--~I~EvIL~~Ke~n~~aR~~Af~lL 762 (1176)
T KOG1248|consen 685 PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK--LIPEVILSLKEVNVKARRNAFALL 762 (1176)
T ss_pred CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH--HHHHHHHhcccccHHHHhhHHHHH
Confidence 234556677777777778999999999999999999998 33332 333333344788888888999999
Q ss_pred HHHh--hcCCCCcccccHHHHHHHHHHhccC----ChhHHH----HHHHHHhhccc-ccHHHHHHHHHHHHHhhcCCChH
Q 002971 145 AEIE--ENSSRPIFEITSHTLSKLLTALNEC----TEWGQV----FILDALSRYKA-ADAREAENIVERVTPRLQHANCA 213 (862)
Q Consensus 145 ~~i~--~~~~~~~~~l~~~~~~~Ll~~l~~~----~~w~q~----~iL~~L~~~~~-~~~~~~~~il~~v~~~l~~~n~a 213 (862)
..|+ ...-...-+-....+...+..+..- ..-... .+=.++..+.. -+.+....+++.|.-+|.+.++.
T Consensus 763 ~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sre 842 (1176)
T KOG1248|consen 763 VFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSRE 842 (1176)
T ss_pred HHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHH
Confidence 9998 3211100000112344444433211 111111 11122222221 23445567788888889999999
Q ss_pred HHHHHHHHHHHh
Q 002971 214 VVLSAVKMILQQ 225 (862)
Q Consensus 214 V~~eai~~i~~~ 225 (862)
|+-.||..+--+
T Consensus 843 I~kaAI~fikvl 854 (1176)
T KOG1248|consen 843 IAKAAIGFIKVL 854 (1176)
T ss_pred HHHHHHHHHHHH
Confidence 999998877654
No 113
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.35 E-value=1.9 Score=46.77 Aligned_cols=106 Identities=21% Similarity=0.309 Sum_probs=82.4
Q ss_pred HHHHHHHHhhcCCCCHHHHhHHHHHhcCCC--hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcc-ccccc---
Q 002971 45 ILAVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA-ELVED--- 118 (862)
Q Consensus 45 ~L~intl~kDl~~~n~~ir~lALr~l~~i~--~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p-~~~~~--- 118 (862)
-+.-+-+..-++++++.+|..|+++||-.+ ..+++..-++-+.+.+...++-||-+|+.++.-+...++ +.+..
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 455556668889999999999999998654 788898888888888866799999999999999887765 22221
Q ss_pred -------cchHHHHHHhhcCCChhHHHHHHHHHHHHhhc
Q 002971 119 -------RGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (862)
Q Consensus 119 -------~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 150 (862)
..+.+.+.+.|.+.++.+...|+-.+..+.-.
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred cCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 23566778888888888888887777766443
No 114
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.98 E-value=1.3 Score=53.59 Aligned_cols=136 Identities=27% Similarity=0.314 Sum_probs=97.2
Q ss_pred chHHHhHhccCCCcchHHH-HHHHHHHhcCCCCcHHHHHHHHHHhh---------c---CCCCHHHHhHHHHHhcCCChh
Q 002971 10 LFTDVVNCMQTENLELKKL-VYLYLINYAKSQPDLAILAVNTFVKD---------S---QDPNPLIRALAVRTMGCIRVD 76 (862)
Q Consensus 10 lf~~vv~l~~s~~~~~Kkl-~Yl~l~~~~~~~~el~~L~intl~kD---------l---~~~n~~ir~lALr~l~~i~~~ 76 (862)
.||.|+||++|+-.++|-+ +|+-..+++-..+=.+- |.|| | +.-++.-|++|--.|+.|...
T Consensus 513 IFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~d-----LvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~n 587 (1387)
T KOG1517|consen 513 IFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQAD-----LVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRN 587 (1387)
T ss_pred hHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHH-----HHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcc
Confidence 6999999999999999986 66666666543221111 3344 1 223568899999988876421
Q ss_pred ------hhH-HHHHHHHHhhhCC-CChHHHHHHHHHHHHHHhhccccc---cccchHHHHHHhhcCCChhHHHHHHHHHH
Q 002971 77 ------KIT-EYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAELV---EDRGFLESLKDLISDNNPMVVANAVAALA 145 (862)
Q Consensus 77 ------~~~-~~l~~~v~~~l~d-~~~yVRk~A~~~l~kl~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~ 145 (862)
+.. ..++..-...+.| +.|..|.-.++|+.+++.-+++.- .+....++|..+|.|.-|.|.++|+-||.
T Consensus 588 f~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALg 667 (1387)
T KOG1517|consen 588 FKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALG 667 (1387)
T ss_pred cchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 111 2333344455566 589999999999999999887641 12356789999999999999999999998
Q ss_pred HHhhc
Q 002971 146 EIEEN 150 (862)
Q Consensus 146 ~i~~~ 150 (862)
.....
T Consensus 668 tfl~~ 672 (1387)
T KOG1517|consen 668 TFLSN 672 (1387)
T ss_pred HHhcc
Confidence 87654
No 115
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.97 E-value=22 Score=44.31 Aligned_cols=280 Identities=15% Similarity=0.193 Sum_probs=138.7
Q ss_pred ChHHHHHHHHHHH-HHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHH-hhcCCCCcccccHHHHHHHHHH--
Q 002971 94 DPYVRKTAAICVA-KLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEI-EENSSRPIFEITSHTLSKLLTA-- 169 (862)
Q Consensus 94 ~~yVRk~A~~~l~-kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i-~~~~~~~~~~l~~~~~~~Ll~~-- 169 (862)
..-.|++-+..+. ..+...|.-+.. .+.+.+.++..|.|.++..--...+..+ ..-.+ ......+.++.+.
T Consensus 586 ~l~~~~~~L~~i~~~~~~~t~~dv~~-~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~----~~~e~~vs~l~~v~~ 660 (1176)
T KOG1248|consen 586 ILASRSTVLEIIRVDYFTVTPTDVVG-SLKDSAGELASDLDESVASFKTLSLLDLLIALAP----VQTESQVSKLFTVDP 660 (1176)
T ss_pred cHHHHHHHHHHHHHHHhhcccHHHHH-HHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhc----cccchhHHHHHHhhH
Confidence 3445666666666 334445543332 3677777787777766644322222222 21111 0011223333322
Q ss_pred -hccC-ChhHHHHHHHHHhhccccc------HHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHHHh
Q 002971 170 -LNEC-TEWGQVFILDALSRYKAAD------AREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKK 241 (862)
Q Consensus 170 -l~~~-~~w~q~~iL~~L~~~~~~~------~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~ 241 (862)
...+ +.-.|-+.-++|....+.. .+....+.+.+.+-.++....+..+..+++-.+++..+ .+...-+.+.
T Consensus 661 ~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~-~e~~~~i~k~ 739 (1176)
T KOG1248|consen 661 EFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLS-AEHCDLIPKL 739 (1176)
T ss_pred HhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc-HHHHHHHHHH
Confidence 2223 6667888888887665542 23445677777787887777666666555554443222 1111111111
Q ss_pred cccchhhcccCChhHHHHHHHHHHHHH--hhC------h--hhhhccceEEEe-cCCCcHHHHHH---HHHHHH----Hh
Q 002971 242 MAPPLVTLLSAEPEIQYVALRNINLIV--QRR------P--TILAHEIKVFFC-KYNDPIYVKME---KLEIMI----KL 303 (862)
Q Consensus 242 ~~~~L~~lls~~~~iry~aL~~l~~i~--~~~------p--~~~~~~~~~~~~-l~~d~~~Ik~~---~L~lL~----~l 303 (862)
+...++.+-.-+...|-.+..+|..|. +.+ | ..+..++.++.- +-.|..-.+-. ++..++ ..
T Consensus 740 I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ 819 (1176)
T KOG1248|consen 740 IPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNI 819 (1176)
T ss_pred HHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcc
Confidence 111122221112336666777776666 221 1 123333333222 11222222211 221111 13
Q ss_pred cCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhH-----hHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHh
Q 002971 304 ASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLER-----AAERCISVLLELIKIKVNYVVQEAIIVIKDIFRR 378 (862)
Q Consensus 304 ~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~-----~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~ 378 (862)
.+..-+..+++.+.-|+.+...++++.+|..|..+..++|. ..+..+..++.++.....++...+-..+..++++
T Consensus 820 ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirk 899 (1176)
T KOG1248|consen 820 LDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRK 899 (1176)
T ss_pred ccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 44555666777777778888888888888888877777653 2233445555555554455555555555555555
Q ss_pred C
Q 002971 379 Y 379 (862)
Q Consensus 379 ~ 379 (862)
+
T Consensus 900 f 900 (1176)
T KOG1248|consen 900 F 900 (1176)
T ss_pred h
Confidence 4
No 116
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.89 E-value=0.2 Score=59.82 Aligned_cols=95 Identities=17% Similarity=0.139 Sum_probs=75.0
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHH
Q 002971 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (862)
Q Consensus 47 ~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~ 126 (862)
+...|.++.+..+...+-++|++||+++.+..+..+.+.+. .-...++++|..|+.|+.++-..+|+.+. +.+.
T Consensus 447 l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~-----~~l~ 520 (574)
T smart00638 447 LHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQ-----EVLL 520 (574)
T ss_pred HHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHH-----HHHH
Confidence 44445555566788889999999999999999999888776 33457889999999999999988998765 4555
Q ss_pred Hhhc--CCChhHHHHHHHHHHHH
Q 002971 127 DLIS--DNNPMVVANAVAALAEI 147 (862)
Q Consensus 127 ~lL~--d~d~~V~~~a~~~l~~i 147 (862)
.++. +.++-|..+|+.+|..-
T Consensus 521 ~i~~n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 521 PIYLNRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred HHHcCCCCChHHHHHHHHHHHhc
Confidence 5554 46788999998888764
No 117
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=93.86 E-value=2.4 Score=51.14 Aligned_cols=257 Identities=16% Similarity=0.155 Sum_probs=160.6
Q ss_pred ccchHHHhHhccCCCcchHHHHHHHHHHhcCCCC--cHHHHHHHHHHhhcCCCCHHHHh-------HHHHHhcCCChhhh
Q 002971 8 SSLFTDVVNCMQTENLELKKLVYLYLINYAKSQP--DLAILAVNTFVKDSQDPNPLIRA-------LAVRTMGCIRVDKI 78 (862)
Q Consensus 8 s~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~--el~~L~intl~kDl~~~n~~ir~-------lALr~l~~i~~~~~ 78 (862)
+..++.+-.++.+++...|...-..+......-+ ...-....-+..-+++..+.+|. .+...++.++..-.
T Consensus 397 ~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~ 476 (759)
T KOG0211|consen 397 SSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTV 476 (759)
T ss_pred hhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhh
Confidence 3456777778888887777665444444432211 10011111122334444555554 44456666777777
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccc
Q 002971 79 TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI 158 (862)
Q Consensus 79 ~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l 158 (862)
.+.+.+.+..+..|.++-||.+..-.+..+....-..+-++.+.+.+..-|.|....+.-+|...+..+...-+ ..|..
T Consensus 477 s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~~ 555 (759)
T KOG0211|consen 477 SNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEWAR 555 (759)
T ss_pred hhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cchhH
Confidence 88889999999999999999988888876655433222222355555556667777777777777777776654 33332
Q ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHhhcccc--cHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHH
Q 002971 159 TSHTLSKLLTALNECTEWGQVFILDALSRYKAA--DAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVR 236 (862)
Q Consensus 159 ~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~--~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~ 236 (862)
+..+.+++....+.+=|....++..+..+.+- .+-..++++..+.....+..+-|.+.+++.+-.+.+.+ +++..+
T Consensus 556 -~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L-~~~~~~ 633 (759)
T KOG0211|consen 556 -LEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLL-DESVRD 633 (759)
T ss_pred -HHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhc-chHHHH
Confidence 24566777766555556666666666654432 22234566777777788889999999999988776554 334444
Q ss_pred HHHHhcccchhhccc-CChhHHHHHHHHHHHHHhh
Q 002971 237 NLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQR 270 (862)
Q Consensus 237 ~~~~~~~~~L~~lls-~~~~iry~aL~~l~~i~~~ 270 (862)
. .+.+.+.+|.+ .+.++||.+..++..+...
T Consensus 634 ~---~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 634 E---EVLPLLETLSSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred H---HHHHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence 3 24455566664 5778999999888877653
No 118
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.72 E-value=0.16 Score=44.76 Aligned_cols=80 Identities=18% Similarity=0.113 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHhhccccccc--cchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCC
Q 002971 97 VRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECT 174 (862)
Q Consensus 97 VRk~A~~~l~kl~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~ 174 (862)
-||-+++|+..+..--++.+.+ ..+++.+..++.|.|+.|...|+-+|+.|.+...+..+.....++..|++.+.|.+
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 3888888888876544433321 23667778889999999999999999999877554444444455555555555554
Q ss_pred hh
Q 002971 175 EW 176 (862)
Q Consensus 175 ~w 176 (862)
+=
T Consensus 82 ~~ 83 (97)
T PF12755_consen 82 EN 83 (97)
T ss_pred hh
Confidence 43
No 119
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.62 E-value=0.49 Score=41.25 Aligned_cols=67 Identities=21% Similarity=0.307 Sum_probs=37.5
Q ss_pred HHhhhCCCChHHHHHHHHHHHHHHhhcc-ccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCC
Q 002971 86 LQRCLKDDDPYVRKTAAICVAKLYDINA-ELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (862)
Q Consensus 86 v~~~l~d~~~yVRk~A~~~l~kl~~~~p-~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~ 152 (862)
+..-+.|+.+.||--|..-+.++.+... ........+..+...|.|.|+-|=.+|+..|..++...|
T Consensus 8 al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 8 ALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 3444455555566666666655555443 222222344555666677777777777777776665544
No 120
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.60 E-value=1.2 Score=51.56 Aligned_cols=139 Identities=24% Similarity=0.239 Sum_probs=96.0
Q ss_pred HHHHHHHHHhhcCCCCHHHHhHHHHHhcC---CChhhh--------HHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhc
Q 002971 44 AILAVNTFVKDSQDPNPLIRALAVRTMGC---IRVDKI--------TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN 112 (862)
Q Consensus 44 ~~L~intl~kDl~~~n~~ir~lALr~l~~---i~~~~~--------~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~ 112 (862)
-.|.-.-+-+-|+-+|-.+|+.|+..+-. |+.|+. ++.-...+.++|.|.-|-||..|+.++.|++.+.
T Consensus 172 ~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f 251 (1005)
T KOG1949|consen 172 YRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKF 251 (1005)
T ss_pred HHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 34555567789999999999999887765 445544 3444677889999999999999999999998877
Q ss_pred cccccccchHHHHHHhh----cCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHh----ccCChhHHHHHHHH
Q 002971 113 AELVEDRGFLESLKDLI----SDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTAL----NECTEWGQVFILDA 184 (862)
Q Consensus 113 p~~~~~~~~~~~l~~lL----~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l----~~~~~w~q~~iL~~ 184 (862)
=+.++..-+.+.+.+.. .|+...|..+.+..|.+|..+. ..++.+..++..+ .|.++-..+...++
T Consensus 252 We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np------~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ 325 (1005)
T KOG1949|consen 252 WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP------LSHPLLEQLLPALRYSLHDNSEKVRVAFVDM 325 (1005)
T ss_pred HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc------cchhHHHHHHHhcchhhhccchhHHHHHHHH
Confidence 66666533344444333 4666788888888888886542 2334455555443 45566666666666
Q ss_pred Hhhc
Q 002971 185 LSRY 188 (862)
Q Consensus 185 L~~~ 188 (862)
|.+.
T Consensus 326 ll~i 329 (1005)
T KOG1949|consen 326 LLKI 329 (1005)
T ss_pred HHHH
Confidence 6554
No 121
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.94 E-value=2.8 Score=45.34 Aligned_cols=132 Identities=20% Similarity=0.224 Sum_probs=85.0
Q ss_pred ccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHH-----HHhhcCCCCHHHHhHHHHHhcCCC--hhhhHHHH-----HHH
Q 002971 18 MQTENLELKKLVYLYLINYAKSQPDLAILAVNT-----FVKDSQDPNPLIRALAVRTMGCIR--VDKITEYL-----CDP 85 (862)
Q Consensus 18 ~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~int-----l~kDl~~~n~~ir~lALr~l~~i~--~~~~~~~l-----~~~ 85 (862)
-++.+.+.|--+.==+..+.+.- |-|...++. +..=++++++.+|.+|.+++|... +|..-+.+ ...
T Consensus 92 ~~s~~le~ke~ald~Le~lve~i-DnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~ 170 (342)
T KOG2160|consen 92 SSSVDLEDKEDALDNLEELVEDI-DNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSK 170 (342)
T ss_pred cccCCHHHHHHHHHHHHHHHHhh-hhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHH
Confidence 34556666655554444444432 222222221 233678999999999999999875 55554443 345
Q ss_pred HHhhhC-CCChHHHHHHHHHHHHHHhhccccccc----cchHHHHHHhhcC--CChhHHHHHHHHHHHHhhcC
Q 002971 86 LQRCLK-DDDPYVRKTAAICVAKLYDINAELVED----RGFLESLKDLISD--NNPMVVANAVAALAEIEENS 151 (862)
Q Consensus 86 v~~~l~-d~~~yVRk~A~~~l~kl~~~~p~~~~~----~~~~~~l~~lL~d--~d~~V~~~a~~~l~~i~~~~ 151 (862)
+.+.+. +.+-.||+||..|+.-+.|.+|-.... .+ ...|...|.+ .+.....-++.++..+.+.+
T Consensus 171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~ 242 (342)
T KOG2160|consen 171 LLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQED 242 (342)
T ss_pred HHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh
Confidence 555555 477789999999999999998854431 23 3678888887 55666667777777666543
No 122
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=92.82 E-value=17 Score=39.70 Aligned_cols=78 Identities=18% Similarity=0.224 Sum_probs=66.0
Q ss_pred HHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhC
Q 002971 13 DVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLK 91 (862)
Q Consensus 13 ~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~ 91 (862)
.|++... .....||++--++-+|+++-|+++.-+++.-..-+.|.+--||--|+|-|...+..+...-+.+.+.++|.
T Consensus 29 ~il~~~k-~~~k~k~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 29 GILKAVK-GTSKEKRLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLN 106 (460)
T ss_pred HHHHHhh-cchHHHHHHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHH
Confidence 3444443 35678999999999999999999999999877777888899999999999998877888888888888887
No 123
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=92.42 E-value=0.42 Score=41.64 Aligned_cols=69 Identities=26% Similarity=0.269 Sum_probs=58.0
Q ss_pred HHHHHhhcCCCCHHHHhHHHHHhcCCCh-h----hhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccc
Q 002971 48 VNTFVKDSQDPNPLIRALAVRTMGCIRV-D----KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELV 116 (862)
Q Consensus 48 intl~kDl~~~n~~ir~lALr~l~~i~~-~----~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~ 116 (862)
.+...++++|+.+-+||-||..|+.+.. . .-.+.+..-....+.|+++||==.|+-|+.-+...+|+.+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~v 78 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEV 78 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHH
Confidence 4566789999999999999999998642 2 2346777888899999999999999999999999999743
No 124
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=92.10 E-value=11 Score=42.08 Aligned_cols=207 Identities=15% Similarity=0.224 Sum_probs=134.1
Q ss_pred hcccCChhHHHHHHHHHHHHHhhChh---hhhccceEEE--ecCCCc--HHHHHHHHHHHHHhcCcCc-H----HHHHHH
Q 002971 248 TLLSAEPEIQYVALRNINLIVQRRPT---ILAHEIKVFF--CKYNDP--IYVKMEKLEIMIKLASDRN-I----DQVLLE 315 (862)
Q Consensus 248 ~lls~~~~iry~aL~~l~~i~~~~p~---~~~~~~~~~~--~l~~d~--~~Ik~~~L~lL~~l~~~~N-v----~~Iv~e 315 (862)
.+|+.++++|-.++|.+..+...... +.+-|+..|. |+..|. ..=|..||.+.-++.+-.+ . ..|++-
T Consensus 33 ~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvra 112 (371)
T PF14664_consen 33 MLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRA 112 (371)
T ss_pred HHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHH
Confidence 35666699999999999888765432 2344665543 443332 3458889999888776532 3 457888
Q ss_pred HHHhhhhccHHHHHHHHHHHHHHHHhhhHhHHHH--HHHHHHHHhhhcchhHHHHHHHHHHHHHhCcccHHHH-----HH
Q 002971 316 FKEYATEVDVDFVRKAVRAIGRCAIKLERAAERC--ISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESI-----IA 388 (862)
Q Consensus 316 L~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~--v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~-----i~ 388 (862)
+..-+.+.++.++.-++..++.++..-|.-.-+| +.++++.+..+.-.+.+-++..+..++ +.|+.|.++ ++
T Consensus 113 lvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~ 191 (371)
T PF14664_consen 113 LVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLL-DSPRTRKYLRPGFDLE 191 (371)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh-CCcchhhhhcCCccHH
Confidence 8888888899999999999999999887755554 677777776633234444455666665 457666543 23
Q ss_pred HHHHhhccC------Cch------HHHHHHHHHHhhcccccC---CHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcC
Q 002971 389 TLCESLDTL------DEP------EAKASMIWIIGEYAERID---NADELLESFLESFPEEPAQVQLQLLTATVKLFLKK 453 (862)
Q Consensus 389 ~L~~~l~~~------~~~------~~~~~~~wilGEy~~~i~---~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~ 453 (862)
.++..+-+. ++. .++.++.-++--+...+. +...-++.+++.+....+++|-++|..+..++.-.
T Consensus 192 ~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik 271 (371)
T PF14664_consen 192 SLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIK 271 (371)
T ss_pred HHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC
Confidence 333322222 111 123345566655555442 22256788888887778889999999998888755
Q ss_pred CC
Q 002971 454 PT 455 (862)
Q Consensus 454 ~~ 455 (862)
+.
T Consensus 272 ~p 273 (371)
T PF14664_consen 272 PP 273 (371)
T ss_pred CC
Confidence 43
No 125
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.62 E-value=34 Score=40.40 Aligned_cols=90 Identities=23% Similarity=0.364 Sum_probs=59.0
Q ss_pred HHhhcCCCCHHHHhHHHHHhcCCC------hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHh--hccccccccchH
Q 002971 51 FVKDSQDPNPLIRALAVRTMGCIR------VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYD--INAELVEDRGFL 122 (862)
Q Consensus 51 l~kDl~~~n~~ir~lALr~l~~i~------~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~--~~p~~~~~~~~~ 122 (862)
+.|-..+++-.+|--.+.-++.+. ..++..-+...+..-+.|..|.||.-|+.|+.|+-. .+|+ + ...
T Consensus 90 lLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee-~---~v~ 165 (892)
T KOG2025|consen 90 LLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEE-C---PVV 165 (892)
T ss_pred HHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCc-c---cHH
Confidence 445556666666554444444433 345566667777777889999999999999988753 2222 2 255
Q ss_pred HHHHHhh-cCCChhHHHHHHHHH
Q 002971 123 ESLKDLI-SDNNPMVVANAVAAL 144 (862)
Q Consensus 123 ~~l~~lL-~d~d~~V~~~a~~~l 144 (862)
..+..++ +|+++-|..+|+..+
T Consensus 166 n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 166 NLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred HHHHHHHhcCCcHHHHHHHHHhh
Confidence 6777777 488899988875543
No 126
>PF05536 Neurochondrin: Neurochondrin
Probab=91.26 E-value=37 Score=40.08 Aligned_cols=238 Identities=12% Similarity=0.130 Sum_probs=129.7
Q ss_pred CcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHH
Q 002971 6 DVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDP 85 (862)
Q Consensus 6 dvs~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~ 85 (862)
+.+..+-.+++++++.+=+.|-.|-+-+..+.+.++.... .-. ... .++| . ..
T Consensus 2 ~~~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~-~~~----------~v~-----~aig---~--------~F 54 (543)
T PF05536_consen 2 GQSASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQ-TRR----------RVF-----EAIG---F--------KF 54 (543)
T ss_pred CchHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHH-HHH----------HHH-----HhcC---h--------hH
Confidence 3455677888999999966666666666666554432110 000 011 1111 1 12
Q ss_pred HHhhhCC------CChHHHHHHHHHHHHHHhhccccccccchH---HHHHHhhcCCCh-hHHHHHHHHHHHHhhcCCCCc
Q 002971 86 LQRCLKD------DDPYVRKTAAICVAKLYDINAELVEDRGFL---ESLKDLISDNNP-MVVANAVAALAEIEENSSRPI 155 (862)
Q Consensus 86 v~~~l~d------~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~---~~l~~lL~d~d~-~V~~~a~~~l~~i~~~~~~~~ 155 (862)
+.++|+. .++..-+.-+++++..|-.+|++..+.+++ |.+.+.+...+. .++.-|+..|..|+.+..+..
T Consensus 55 l~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~ 134 (543)
T PF05536_consen 55 LDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAK 134 (543)
T ss_pred HHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHH
Confidence 2333332 366777888888888888888887665554 555566655444 888888888888885533321
Q ss_pred ccccHHHHHHHHHHhccCChhHHHHHHHHHhh----ccc----ccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhh
Q 002971 156 FEITSHTLSKLLTALNECTEWGQVFILDALSR----YKA----ADAREAENIVERVTPRLQHANCAVVLSAVKMILQQME 227 (862)
Q Consensus 156 ~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~----~~~----~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~ 227 (862)
--+....+..|+..+.. .+..+-..+.++.. ... ........++..+....+.....-.++....+..++.
T Consensus 135 aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~ 213 (543)
T PF05536_consen 135 ALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLP 213 (543)
T ss_pred HHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcC
Confidence 11122345566666554 44433333333332 221 1122233445555555555555566777777766654
Q ss_pred ccCC-h---HHHHHHHHhcccchhhcc-cC-ChhHHHHHHHHHHHHHhhC
Q 002971 228 LITS-T---DVVRNLCKKMAPPLVTLL-SA-EPEIQYVALRNINLIVQRR 271 (862)
Q Consensus 228 ~~~~-~---~~~~~~~~~~~~~L~~ll-s~-~~~iry~aL~~l~~i~~~~ 271 (862)
..+. + ..-..+...+...+..++ ++ .+.-|-.++.....+.+..
T Consensus 214 ~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~ 263 (543)
T PF05536_consen 214 RSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLL 263 (543)
T ss_pred cCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 3210 0 011223333444455666 43 5678888888888887764
No 127
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=91.20 E-value=1.2 Score=43.53 Aligned_cols=124 Identities=19% Similarity=0.298 Sum_probs=71.9
Q ss_pred chHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHH
Q 002971 120 GFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENI 199 (862)
Q Consensus 120 ~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~i 199 (862)
.|..++.++|.++++.-.-.++.++..+++..+. + .++ ..+.+|.+. ++.+|+.
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~---e-------~l~---~~~~~W~~~-Ll~~L~~------------ 78 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW---E-------ILL---SHGSQWLRA-LLSILEK------------ 78 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH---H-------HHH---HHHHHHHHH-HHHHHcC------------
Confidence 5888999999988888777888877777665421 1 111 234566655 4455543
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhhccC-ChHHHHHHHH----hcccchhhcccCChhHHHHHHHHHHHHHhhChhh
Q 002971 200 VERVTPRLQHANCAVVLSAVKMILQQMELIT-STDVVRNLCK----KMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTI 274 (862)
Q Consensus 200 l~~v~~~l~~~n~aV~~eai~~i~~~~~~~~-~~~~~~~~~~----~~~~~L~~lls~~~~iry~aL~~l~~i~~~~p~~ 274 (862)
.....++-.|+.++..++..+. .++..+++.. +++++++.++++ +...-.+|+.+..+...||..
T Consensus 79 ---------~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~-~~~~~~~l~~L~~ll~~~ptt 148 (165)
T PF08167_consen 79 ---------PDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD-SSCPETALDALATLLPHHPTT 148 (165)
T ss_pred ---------CCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHCCcc
Confidence 1122333333444433333222 2344444322 233334444443 567778999999999999999
Q ss_pred hhccc
Q 002971 275 LAHEI 279 (862)
Q Consensus 275 ~~~~~ 279 (862)
|.+|.
T Consensus 149 ~rp~~ 153 (165)
T PF08167_consen 149 FRPFA 153 (165)
T ss_pred ccchH
Confidence 88764
No 128
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=91.16 E-value=25 Score=39.39 Aligned_cols=202 Identities=13% Similarity=0.102 Sum_probs=109.5
Q ss_pred ccCCCcchHHHHHHHHHHhcCCC---Cc------HHHHHHHHHHhhcCC-------CCHHHHhHHHHHhcCCC-hhhhH-
Q 002971 18 MQTENLELKKLVYLYLINYAKSQ---PD------LAILAVNTFVKDSQD-------PNPLIRALAVRTMGCIR-VDKIT- 79 (862)
Q Consensus 18 ~~s~~~~~Kkl~Yl~l~~~~~~~---~e------l~~L~intl~kDl~~-------~n~~ir~lALr~l~~i~-~~~~~- 79 (862)
+++.+.+.|.=+|+.+....+.. |+ -+-+.+..+++|+.+ .+..+..-|||+++.+- .++++
T Consensus 2 la~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~ 81 (372)
T PF12231_consen 2 LAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVS 81 (372)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHh
Confidence 34566677777888877766543 22 355667778888876 35566677888887532 22222
Q ss_pred --------------------------------------------------HHHHHHHHhhhC-CCChHHHHHHHHHHHHH
Q 002971 80 --------------------------------------------------EYLCDPLQRCLK-DDDPYVRKTAAICVAKL 108 (862)
Q Consensus 80 --------------------------------------------------~~l~~~v~~~l~-d~~~yVRk~A~~~l~kl 108 (862)
+.+...+...-. =.+.-|=--++.++-++
T Consensus 82 ~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~l 161 (372)
T PF12231_consen 82 TLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRL 161 (372)
T ss_pred hCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHH
Confidence 222222222111 13333445566677777
Q ss_pred Hhhccccccc--cchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCC---------ccc--cc-----HHHHHHHHHHh
Q 002971 109 YDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP---------IFE--IT-----SHTLSKLLTAL 170 (862)
Q Consensus 109 ~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~---------~~~--l~-----~~~~~~Ll~~l 170 (862)
..++|+.+.. ..|.+.+...+-+....+...|+.++.++...-++. .++ +. .-...+|-+.+
T Consensus 162 l~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi 241 (372)
T PF12231_consen 162 LSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMI 241 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHH
Confidence 7788876532 249998888877777777777777777765332111 000 00 00111122222
Q ss_pred cc---C----ChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 002971 171 NE---C----TEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKM 221 (862)
Q Consensus 171 ~~---~----~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~ 221 (862)
.+ . .=|..+ +.+|..-....-+...+.+.....++++.++++..+|..+
T Consensus 242 ~~~~~~~~a~~iW~~~--i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~a 297 (372)
T PF12231_consen 242 KSKDEYKLAMQIWSVV--ILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKA 297 (372)
T ss_pred hCcCCcchHHHHHHHH--HHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 22 1 224432 2233211112223345566666778899999988888744
No 129
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=91.10 E-value=0.46 Score=48.59 Aligned_cols=131 Identities=19% Similarity=0.188 Sum_probs=89.0
Q ss_pred HHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCC--HHHHhHHHHHhcCCChhhhHHHHHHHHHhhh
Q 002971 13 DVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPN--PLIRALAVRTMGCIRVDKITEYLCDPLQRCL 90 (862)
Q Consensus 13 ~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n--~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l 90 (862)
.+-.++++..++.|-++++++....+...+- .+..+.+-+.+-+ ...=++|-+.++.+.... +.+.+.+.+-+
T Consensus 55 l~~~L~~~~~~E~~~la~~il~~~~~~~~~~---~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~--~~~~~~~~~W~ 129 (213)
T PF08713_consen 55 LADELWESGYREERYLALLILDKRRKKLTEE---DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH--PEALELLEKWA 129 (213)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHCGGG--HH---HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH--GGHHHHHHHHH
T ss_pred HHHHHcCCchHHHHHHHHHHhHHHhhhhhHH---HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh--HHHHHHHHHHH
Confidence 3445788888888888888887655443221 3444455444432 234455566666543222 45666788899
Q ss_pred CCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCC
Q 002971 91 KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (862)
Q Consensus 91 ~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~ 152 (862)
.|.++++||.|+.++.+.++. +..+ .+...+..++.|.+..|.-+.--+|.++...++
T Consensus 130 ~s~~~w~rR~~~v~~~~~~~~--~~~~--~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 130 KSDNEWVRRAAIVMLLRYIRK--EDFD--ELLEIIEALLKDEEYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp HCSSHHHHHHHHHCTTTHGGG--CHHH--HHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-H
T ss_pred hCCcHHHHHHHHHHHHHHHHh--cCHH--HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCH
Confidence 999999999999999988776 2222 366777888899999999998899999987764
No 130
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=90.97 E-value=25 Score=37.58 Aligned_cols=210 Identities=12% Similarity=0.175 Sum_probs=124.4
Q ss_pred HhccCCCcchHHHHHHHHHHhcCCCC--c--HHHHHHH-HHHhh----cCCCCHHHHhHHHHHhcCCC-hhhhHHHHHH-
Q 002971 16 NCMQTENLELKKLVYLYLINYAKSQP--D--LAILAVN-TFVKD----SQDPNPLIRALAVRTMGCIR-VDKITEYLCD- 84 (862)
Q Consensus 16 ~l~~s~~~~~Kkl~Yl~l~~~~~~~~--e--l~~L~in-tl~kD----l~~~n~~ir~lALr~l~~i~-~~~~~~~l~~- 84 (862)
.-+..+|-++|-+..=.+..+.+... + ..++++| -+.|- .-..|..+.-.|+.++.+|. .|.-.+.+.+
T Consensus 89 rGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeS 168 (524)
T KOG4413|consen 89 RGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFES 168 (524)
T ss_pred hcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhccc
Confidence 34455666666666555554444322 1 2334444 34442 24577888888888888876 3444443321
Q ss_pred ------HHHhhhCCCChHHHHHHHHHHHHHHhhcccccc---ccchHHHHHHhhcC-CChhHHHHHHHHHHHHhhcCCCC
Q 002971 85 ------PLQRCLKDDDPYVRKTAAICVAKLYDINAELVE---DRGFLESLKDLISD-NNPMVVANAVAALAEIEENSSRP 154 (862)
Q Consensus 85 ------~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~---~~~~~~~l~~lL~d-~d~~V~~~a~~~l~~i~~~~~~~ 154 (862)
.+.++..-.+..+|-....-+.++|..+|+... ..++++.|..=|.- .|..|+.+++-+.+++.....+.
T Consensus 169 ellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgr 248 (524)
T KOG4413|consen 169 ELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGR 248 (524)
T ss_pred ccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhh
Confidence 233444456778888888888999999887643 35777777666654 89999999999999988654333
Q ss_pred cccccHHHHHHHHHHhc--cCChhHHHHHHHHHhhcc-ccc-----H-HHHHHH---HHHHHHhhcCCChHHHHHHHHHH
Q 002971 155 IFEITSHTLSKLLTALN--ECTEWGQVFILDALSRYK-AAD-----A-REAENI---VERVTPRLQHANCAVVLSAVKMI 222 (862)
Q Consensus 155 ~~~l~~~~~~~Ll~~l~--~~~~w~q~~iL~~L~~~~-~~~-----~-~~~~~i---l~~v~~~l~~~n~aV~~eai~~i 222 (862)
.|-.....+..+++++. +.+||..-..|-...++. ... + ...+.+ ++.....+...++...=.|+-++
T Consensus 249 eflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDal 328 (524)
T KOG4413|consen 249 EFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDAL 328 (524)
T ss_pred hhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHH
Confidence 34334456777888775 568887764433333332 211 1 111222 23334445556665555566666
Q ss_pred HHh
Q 002971 223 LQQ 225 (862)
Q Consensus 223 ~~~ 225 (862)
..+
T Consensus 329 Gil 331 (524)
T KOG4413|consen 329 GIL 331 (524)
T ss_pred Hhc
Confidence 554
No 131
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=90.61 E-value=53 Score=40.78 Aligned_cols=413 Identities=14% Similarity=0.174 Sum_probs=207.6
Q ss_pred CCCcccchHHHhH----hccCCCcchHHHHHHHHHHhcCCC-CcHHHHHHHHHHh---hcCCCCH-HHHhHHHHHhcC--
Q 002971 4 GKDVSSLFTDVVN----CMQTENLELKKLVYLYLINYAKSQ-PDLAILAVNTFVK---DSQDPNP-LIRALAVRTMGC-- 72 (862)
Q Consensus 4 G~dvs~lf~~vv~----l~~s~~~~~Kkl~Yl~l~~~~~~~-~el~~L~intl~k---Dl~~~n~-~ir~lALr~l~~-- 72 (862)
|.||+.+.-.+++ .+...|..++.=+-=.+......- ++++.-++.+... -.++.+. .=-||||--|+.
T Consensus 332 ~edv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG 411 (1133)
T KOG1943|consen 332 GEDVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG 411 (1133)
T ss_pred ccccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC
Confidence 5666655545554 455566665554444444444433 5777777766554 2232333 334566666654
Q ss_pred CChhhhHHHHHHHHHhhhC--------CCChHHHHHHHHHHHHHHhhc-cccccccchHHH-----HHHhhcCCChhHHH
Q 002971 73 IRVDKITEYLCDPLQRCLK--------DDDPYVRKTAAICVAKLYDIN-AELVEDRGFLES-----LKDLISDNNPMVVA 138 (862)
Q Consensus 73 i~~~~~~~~l~~~v~~~l~--------d~~~yVRk~A~~~l~kl~~~~-p~~~~~~~~~~~-----l~~lL~d~d~~V~~ 138 (862)
+-.|..++.+.|.|.+.+. +....||-.|+..+--++|-+ |+.+.. +... +...+-|++..+..
T Consensus 412 lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p--~l~~L~s~LL~~AlFDrevncRR 489 (1133)
T KOG1943|consen 412 LLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP--VLQSLASALLIVALFDREVNCRR 489 (1133)
T ss_pred CcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH--HHHHHHHHHHHHHhcCchhhHhH
Confidence 4478888999999988886 255679999999888888854 444443 3332 34566799999999
Q ss_pred HHHHHHHHHhhcCCCC--cccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHh-hcCCChHHH
Q 002971 139 NAVAALAEIEENSSRP--IFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPR-LQHANCAVV 215 (862)
Q Consensus 139 ~a~~~l~~i~~~~~~~--~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~-l~~~n~aV~ 215 (862)
+|.+|+.|..-..+.. -++++. ++... ..-...+-|+++.. .++ +-+.-.+.+++.+... +.|=+..+.
T Consensus 490 AAsAAlqE~VGR~~n~p~Gi~Lis-~~dy~-sV~~rsNcy~~l~~--~ia----~~~~y~~~~f~~L~t~Kv~HWd~~ir 561 (1133)
T KOG1943|consen 490 AASAALQENVGRQGNFPHGISLIS-TIDYF-SVTNRSNCYLDLCV--SIA----EFSGYREPVFNHLLTKKVCHWDVKIR 561 (1133)
T ss_pred HHHHHHHHHhccCCCCCCchhhhh-hcchh-hhhhhhhHHHHHhH--HHH----hhhhHHHHHHHHHHhcccccccHHHH
Confidence 9999999975432211 112211 01000 00011233554322 122 2222334556655443 778888899
Q ss_pred HHHHHHHHHhhhccCChHHHHHHHHhcccchh-hcccCChhHHHHHHHHHHHHHhhChhhhhccceEEEecCCCcHHHHH
Q 002971 216 LSAVKMILQQMELITSTDVVRNLCKKMAPPLV-TLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKM 294 (862)
Q Consensus 216 ~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~-~lls~~~~iry~aL~~l~~i~~~~p~~~~~~~~~~~~l~~d~~~Ik~ 294 (862)
..++.++.++.. ..|+.... -..++|+ ..++++.+.|....-....++...-.+- + ++ .++..
T Consensus 562 elaa~aL~~Ls~--~~pk~~a~---~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~-~---~~-------~~l~e 625 (1133)
T KOG1943|consen 562 ELAAYALHKLSL--TEPKYLAD---YVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLE-P---VI-------KGLDE 625 (1133)
T ss_pred HHHHHHHHHHHH--hhHHhhcc---cchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhh-h---hh-------hhhHH
Confidence 888888877521 23433321 1233444 4557888888887766666654311100 0 00 00000
Q ss_pred HHHHHHHHhcCcCcHHHHHHHHH-Hhh-hhccHHHHHHHHHHHHHHHHh-h----hHhHHHHHHHHHHHHhhhcchhHHH
Q 002971 295 EKLEIMIKLASDRNIDQVLLEFK-EYA-TEVDVDFVRKAVRAIGRCAIK-L----ERAAERCISVLLELIKIKVNYVVQE 367 (862)
Q Consensus 295 ~~L~lL~~l~~~~Nv~~Iv~eL~-~y~-~~~d~~~~~~~i~~I~~la~k-~----~~~~~~~v~~ll~ll~~~~~~v~~e 367 (862)
..+.-+. .|+..+. .|. +....-++....+.|..+... . +...+.+-.++.+.++.. +.+.++
T Consensus 626 ~~i~~l~---------~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~-n~i~~~ 695 (1133)
T KOG1943|consen 626 NRIAGLL---------SIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLP-NQIRDA 695 (1133)
T ss_pred HHhhhhh---------hhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcch-HHHHHH
Confidence 0000000 0111110 000 000011111222222222111 0 112222233444444322 256677
Q ss_pred HHHHHHHHHHhC----cccHHHHHHHHHHhhccCCchHHHHHHHHHHhhcccc-cCC--HHHHHHHHhhhCCCC-CHHHH
Q 002971 368 AIIVIKDIFRRY----PNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAER-IDN--ADELLESFLESFPEE-PAQVQ 439 (862)
Q Consensus 368 ~i~~l~~i~~~~----p~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~-i~~--~~~~l~~~~~~~~~e-~~~v~ 439 (862)
++..+.+++..| +..-..++.+....+.++.+...+..++-++|--... +.- -..+.+.++.-++.. .++-|
T Consensus 696 av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR 775 (1133)
T KOG1943|consen 696 AVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEAR 775 (1133)
T ss_pred HHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHH
Confidence 777777776543 2222235566666665554444555566666644322 111 123344455555555 67788
Q ss_pred HHHHHHHHHHhhc
Q 002971 440 LQLLTATVKLFLK 452 (862)
Q Consensus 440 ~~iLta~~Kl~~~ 452 (862)
.+.+-++.++...
T Consensus 776 ~~~V~al~~v~~~ 788 (1133)
T KOG1943|consen 776 QQNVKALAHVCKT 788 (1133)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888777654
No 132
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=90.53 E-value=12 Score=41.85 Aligned_cols=180 Identities=18% Similarity=0.239 Sum_probs=107.5
Q ss_pred ChHHHHHHHHHHHHHHhhccccccccc---hHHHHHHhhcC-CChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHH
Q 002971 94 DPYVRKTAAICVAKLYDINAELVEDRG---FLESLKDLISD-NNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTA 169 (862)
Q Consensus 94 ~~yVRk~A~~~l~kl~~~~p~~~~~~~---~~~~l~~lL~d-~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~ 169 (862)
..-=||-|..-+.++..-....+=+.. ++..+.+.|.| .|+....-|+..|.+++.+.+...++-..-.+.+++.+
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Lea 379 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEA 379 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHH
Confidence 444566666668888765543332211 23344566778 88888888999999999988766665555556666665
Q ss_pred hccCChh----HHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHHHhcccc
Q 002971 170 LNECTEW----GQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPP 245 (862)
Q Consensus 170 l~~~~~w----~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~ 245 (862)
-.+..+- .---++++++.+.|. .-+..+.+++.+.+.-....+++..-++.+.++ .+.+..+...+.|.
T Consensus 380 a~ds~~~v~~~Aeed~~~~las~~P~------~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~-~EeL~~ll~diaP~ 452 (516)
T KOG2956|consen 380 AKDSQDEVMRVAEEDCLTTLASHLPL------QCIVNISPLILTADEPRAVAVIKMLTKLFERLS-AEELLNLLPDIAPC 452 (516)
T ss_pred HhCCchhHHHHHHHHHHHHHHhhCch------hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcC-HHHHHHhhhhhhhH
Confidence 5444321 111234445444432 113334455656665555566666666555453 34444455567776
Q ss_pred hhhcc-cCChhHHHHHHHHHHHHHhhCh-hhhhccce
Q 002971 246 LVTLL-SAEPEIQYVALRNINLIVQRRP-TILAHEIK 280 (862)
Q Consensus 246 L~~ll-s~~~~iry~aL~~l~~i~~~~p-~~~~~~~~ 280 (862)
++.-- |.+.-+|-.+.-+|..|+.+-. +-+.+|+.
T Consensus 453 ~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~ 489 (516)
T KOG2956|consen 453 VIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLE 489 (516)
T ss_pred HHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhh
Confidence 66544 5677788888888877777655 66677764
No 133
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=90.49 E-value=20 Score=39.02 Aligned_cols=187 Identities=18% Similarity=0.210 Sum_probs=104.0
Q ss_pred HHHHHhhhCCCChHHHHHHHHHHHHHHhhc--cccccc--cchHHHHHHhhcCCC--hhHHHHHHHHHHHHhhcCCCCcc
Q 002971 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDIN--AELVED--RGFLESLKDLISDNN--PMVVANAVAALAEIEENSSRPIF 156 (862)
Q Consensus 83 ~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~--p~~~~~--~~~~~~l~~lL~d~d--~~V~~~a~~~l~~i~~~~~~~~~ 156 (862)
+......+.+++.-.|..|..++.+++... |+.+.+ ..+.+.+.+.++-.. ....+.-+..|.-|.-..+...-
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 334556667888999999999999998653 344432 134556666676433 33333222223223211111122
Q ss_pred cccHHHHHHHHHHhccCCh--hHHHH---HHHHHhhcccccHHHHH---HHHHHHHH--hhcC----------CChHHHH
Q 002971 157 EITSHTLSKLLTALNECTE--WGQVF---ILDALSRYKAADAREAE---NIVERVTP--RLQH----------ANCAVVL 216 (862)
Q Consensus 157 ~l~~~~~~~Ll~~l~~~~~--w~q~~---iL~~L~~~~~~~~~~~~---~il~~v~~--~l~~----------~n~aV~~ 216 (862)
.+.....+.|.+.+.+.+. -.... .|-++..++-.+.++.. +.++.+.. ..+. .+++|+-
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 3333334444455555432 22223 44555555666666666 44442221 1221 1246777
Q ss_pred HHHHHHHHhhhccCChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhh
Q 002971 217 SAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQR 270 (862)
Q Consensus 217 eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~ 270 (862)
+|+..-.-++..++ ...+........+.|..+| +.+.++|-.|=.+|..|...
T Consensus 205 aAL~aW~lLlt~~~-~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 205 AALSAWALLLTTLP-DSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 77777665554443 3233455556677788888 67899999999999988654
No 134
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.44 E-value=35 Score=38.39 Aligned_cols=99 Identities=22% Similarity=0.252 Sum_probs=58.7
Q ss_pred CcHHHHHHHHHHHHHhc-CcCcHHHHHHHH--HHhhhh------ccHHHHHHHHHHHHHHHHhhhH----hHHHHHHHHH
Q 002971 288 DPIYVKMEKLEIMIKLA-SDRNIDQVLLEF--KEYATE------VDVDFVRKAVRAIGRCAIKLER----AAERCISVLL 354 (862)
Q Consensus 288 d~~~Ik~~~L~lL~~l~-~~~Nv~~Iv~eL--~~y~~~------~d~~~~~~~i~~I~~la~k~~~----~~~~~v~~ll 354 (862)
++.+.-.+.|-.|..|. ..--+..|+++. ..|+++ ...+++-++|.++|.+|..... .....+++++
T Consensus 517 ~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tli 596 (791)
T KOG1222|consen 517 NSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLI 596 (791)
T ss_pred chHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHH
Confidence 33444445555554443 234566666653 345542 2456888899999987764321 1225789999
Q ss_pred HHHhhh--cchhHHHHHHHHHHHHHhCcccHHHHH
Q 002971 355 ELIKIK--VNYVVQEAIIVIKDIFRRYPNTYESII 387 (862)
Q Consensus 355 ~ll~~~--~~~v~~e~i~~l~~i~~~~p~~~~~~i 387 (862)
+||... .+.++-.++.++.+++++ .-.++.++
T Consensus 597 eLL~a~QeDDEfV~QiiyVF~Q~l~H-e~tr~~mi 630 (791)
T KOG1222|consen 597 ELLQACQEDDEFVVQIIYVFLQFLKH-ELTRRLMI 630 (791)
T ss_pred HHHHhhcccchHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 999754 345555677788888776 33344444
No 135
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.43 E-value=3.1 Score=48.53 Aligned_cols=137 Identities=18% Similarity=0.163 Sum_probs=92.6
Q ss_pred cccchHHHhHhccCCCcchHHHHHHHHHHhcCCC----CcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChh------
Q 002971 7 VSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQ----PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVD------ 76 (862)
Q Consensus 7 vs~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~----~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~------ 76 (862)
|..+|-++++-..+++..+|+=+...+..+..+. .++.-...-.+.+=+.|+.|.+|--|+-+||.+...
T Consensus 83 V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~ 162 (892)
T KOG2025|consen 83 VAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC 162 (892)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc
Confidence 3457889999999999999888888887777643 456666666677778899999999999999998732
Q ss_pred hhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccc---------------------------cchHHHHHHhh
Q 002971 77 KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED---------------------------RGFLESLKDLI 129 (862)
Q Consensus 77 ~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~---------------------------~~~~~~l~~lL 129 (862)
++...+...|+ .|+++-|||.|..++.-=-...|-+++. ...+-.++.-|
T Consensus 163 ~v~n~l~~liq---nDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~anRrlvY~r~lpkid~r~lsi~krv~LlewgL 239 (892)
T KOG2025|consen 163 PVVNLLKDLIQ---NDPSDEVRRAALSNISVDNSTLPCIVERARDVSGANRRLVYERCLPKIDLRSLSIDKRVLLLEWGL 239 (892)
T ss_pred cHHHHHHHHHh---cCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhh
Confidence 12233222222 5899999999988764211111211110 12344556667
Q ss_pred cCCChhHHHHHHHHHHH
Q 002971 130 SDNNPMVVANAVAALAE 146 (862)
Q Consensus 130 ~d~d~~V~~~a~~~l~~ 146 (862)
+|++-.|..++.-++..
T Consensus 240 nDRe~sVk~A~~d~il~ 256 (892)
T KOG2025|consen 240 NDREFSVKGALVDAILS 256 (892)
T ss_pred hhhhhHHHHHHHHHHHH
Confidence 88888888777766654
No 136
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.32 E-value=2.2 Score=46.08 Aligned_cols=108 Identities=23% Similarity=0.187 Sum_probs=75.1
Q ss_pred HHHHhhhCCCChHHHHHHHHHHHHHHhhcccc---ccccchHHHHHHhhc-CCChhHHHHHHHHHHHHhhcCCCC--ccc
Q 002971 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLIS-DNNPMVVANAVAALAEIEENSSRP--IFE 157 (862)
Q Consensus 84 ~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~---~~~~~~~~~l~~lL~-d~d~~V~~~a~~~l~~i~~~~~~~--~~~ 157 (862)
..+...+.++++-||+.|+..+..+.+-+|.. +-+.++.+.|...|. |.+-.|...|+.|++-...+.+.. .|.
T Consensus 127 ~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl 206 (342)
T KOG2160|consen 127 VPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFL 206 (342)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 45566889999999999999999999999953 333467788887776 556677789999998877665321 122
Q ss_pred ccHHHHHHHHHHhcc--CChhHHHHHHHHHhhccccc
Q 002971 158 ITSHTLSKLLTALNE--CTEWGQVFILDALSRYKAAD 192 (862)
Q Consensus 158 l~~~~~~~Ll~~l~~--~~~w~q~~iL~~L~~~~~~~ 192 (862)
.+.. +.-|.+.+.. .+.-.|.+++.++..+...+
T Consensus 207 ~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~ 242 (342)
T KOG2160|consen 207 KLNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQED 242 (342)
T ss_pred hcCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh
Confidence 2222 4445555554 56677788877777665443
No 137
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=90.10 E-value=0.6 Score=31.50 Aligned_cols=30 Identities=33% Similarity=0.464 Sum_probs=25.5
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHHhhc
Q 002971 121 FLESLKDLISDNNPMVVANAVAALAEIEEN 150 (862)
Q Consensus 121 ~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 150 (862)
+++.+.++++|+++.|..+|+.+|..|.++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 367889999999999999999999988753
No 138
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=89.59 E-value=0.68 Score=55.84 Aligned_cols=99 Identities=13% Similarity=0.114 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchH
Q 002971 43 LAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFL 122 (862)
Q Consensus 43 l~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~ 122 (862)
+.-...+.+.+.....+..-+-++|++||+++.++.++.+.+.+..-- +.+..+|..|+.|+.++-..+|+.+.
T Consensus 487 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~i~~~~-~~~~~~R~~Ai~Alr~~~~~~~~~v~----- 560 (618)
T PF01347_consen 487 YVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVLLPYIEGKE-EVPHFIRVAAIQALRRLAKHCPEKVR----- 560 (618)
T ss_dssp GTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTTSTTSS--S-HHHHHHHHHTTTTGGGT-HHHHH-----
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHHHhHhhhcc-ccchHHHHHHHHHHHHHhhcCcHHHH-----
Confidence 444445556655567788999999999999999988887654443322 45899999999999999777876553
Q ss_pred HHHHHhhcC--CChhHHHHHHHHHHHH
Q 002971 123 ESLKDLISD--NNPMVVANAVAALAEI 147 (862)
Q Consensus 123 ~~l~~lL~d--~d~~V~~~a~~~l~~i 147 (862)
+.+..++.| .++-|..+|+.+|..-
T Consensus 561 ~~l~~I~~n~~e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 561 EILLPIFMNTTEDPEVRIAAYLILMRC 587 (618)
T ss_dssp HHHHHHHH-TTS-HHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCChhHHHHHHHHHHhc
Confidence 566666654 5788998888877764
No 139
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=88.91 E-value=3.7 Score=42.46 Aligned_cols=89 Identities=25% Similarity=0.368 Sum_probs=73.3
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCC--CChHHHHHHHHHHHHHHhhccccccccchHHH
Q 002971 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD--DDPYVRKTAAICVAKLYDINAELVEDRGFLES 124 (862)
Q Consensus 47 ~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~d--~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~ 124 (862)
+||.|-.-+.+...++|--+--++|.+.++.-++.+ .+.|.| .+|+||--|+.|+..+-. + +-++.
T Consensus 188 aI~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~~L----~k~L~d~~E~pMVRhEaAeALGaIa~--e------~~~~v 255 (289)
T KOG0567|consen 188 AINALIDGLADDSALFRHEVAFVFGQLQSPAAIPSL----IKVLLDETEHPMVRHEAAEALGAIAD--E------DCVEV 255 (289)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhhccchhhhHHH----HHHHHhhhcchHHHHHHHHHHHhhcC--H------HHHHH
Confidence 688889999999999999999999999999777765 455555 789999999999997743 2 35688
Q ss_pred HHHhhcCCChhHHHHHHHHHHHH
Q 002971 125 LKDLISDNNPMVVANAVAALAEI 147 (862)
Q Consensus 125 l~~lL~d~d~~V~~~a~~~l~~i 147 (862)
|++.+.|.++.|.-++..+|.-.
T Consensus 256 L~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 256 LKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHH
Confidence 99999999999888887777443
No 140
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=88.90 E-value=36 Score=36.39 Aligned_cols=148 Identities=18% Similarity=0.280 Sum_probs=87.3
Q ss_pred hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcc-c------cccccchHHHHHHhhcCCChhHHHHHHHHHHHH
Q 002971 75 VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA-E------LVEDRGFLESLKDLISDNNPMVVANAVAALAEI 147 (862)
Q Consensus 75 ~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p-~------~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i 147 (862)
...+++.+.+.+++.|.+.+..|+--|+-.++++...+. + .+.+.++.+.|..++-..|..|.-+|+-.+..|
T Consensus 76 gahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikri 155 (524)
T KOG4413|consen 76 GAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRI 155 (524)
T ss_pred chhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 456777888888888888888888888888888876443 1 122345666666777777888887777777666
Q ss_pred hhcCCC--Cccc---ccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHH-----HHHHHHHHhhcC-CChHHHH
Q 002971 148 EENSSR--PIFE---ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE-----NIVERVTPRLQH-ANCAVVL 216 (862)
Q Consensus 148 ~~~~~~--~~~~---l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~-----~il~~v~~~l~~-~n~aV~~ 216 (862)
+.-... ..|+ +..- ++.+.-..|+....+.++.++-.+..-+++.+. -+++.+..-++- .+.-|..
T Consensus 156 alfpaaleaiFeSellDdl---hlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVia 232 (524)
T KOG4413|consen 156 ALFPAALEAIFESELLDDL---HLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIA 232 (524)
T ss_pred HhcHHHHHHhcccccCChH---HHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehh
Confidence 532100 0111 0111 222222357777888888777665443333322 234444443443 4456666
Q ss_pred HHHHHHHHh
Q 002971 217 SAVKMILQQ 225 (862)
Q Consensus 217 eai~~i~~~ 225 (862)
.|+..+..+
T Consensus 233 nciElvteL 241 (524)
T KOG4413|consen 233 NCIELVTEL 241 (524)
T ss_pred hHHHHHHHH
Confidence 777666654
No 141
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=88.88 E-value=18 Score=42.22 Aligned_cols=172 Identities=11% Similarity=0.067 Sum_probs=107.9
Q ss_pred hhcCCCCHHHHhHHHHHhcCCChh----------hhHHHHHHHH-HhhhCCCChHHHHHHHHHHHHHHhh----cccccc
Q 002971 53 KDSQDPNPLIRALAVRTMGCIRVD----------KITEYLCDPL-QRCLKDDDPYVRKTAAICVAKLYDI----NAELVE 117 (862)
Q Consensus 53 kDl~~~n~~ir~lALr~l~~i~~~----------~~~~~l~~~v-~~~l~d~~~yVRk~A~~~l~kl~~~----~p~~~~ 117 (862)
..++...|.+|.++++-.+....- ++.++....+ .....+++.-++++|++|+.-+-+. .-+ ..
T Consensus 338 ~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg-~~ 416 (678)
T KOG1293|consen 338 ASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTG-LK 416 (678)
T ss_pred HHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcC-Cc
Confidence 345667788888888876654321 2223222222 2223358888999999998766553 333 33
Q ss_pred ccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCC-cccccHHHHHHHHHHhccCChhHHHHHHHHHhhccccc-HHH
Q 002971 118 DRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP-IFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAAD-ARE 195 (862)
Q Consensus 118 ~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~-~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~-~~~ 195 (862)
+.+..+.+.++|.|.+.+|..+++.+++.+.-+-... -.-+...-+.++.+.+.++++-....-+++|...--.+ .++
T Consensus 417 ~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~ 496 (678)
T KOG1293|consen 417 RNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEE 496 (678)
T ss_pred cchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHH
Confidence 3467889999999999999999999999876442111 01122234567777777788877787788886432222 222
Q ss_pred HHHHH-----HHHHHhhcCCChHHHHHHHHHHHHh
Q 002971 196 AENIV-----ERVTPRLQHANCAVVLSAVKMILQQ 225 (862)
Q Consensus 196 ~~~il-----~~v~~~l~~~n~aV~~eai~~i~~~ 225 (862)
.+..+ +.+..+.+....+|.=.|.++.-++
T Consensus 497 k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl 531 (678)
T KOG1293|consen 497 KFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNL 531 (678)
T ss_pred HHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 22333 2345556777778888887777665
No 142
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.68 E-value=36 Score=40.15 Aligned_cols=207 Identities=13% Similarity=0.098 Sum_probs=112.0
Q ss_pred HhhcCCChHHHHHHHHHHHHhhhccCChHH----HHHHHHhcccchhhccc-CChhHHHHHHHHHHHHHhhChh-----h
Q 002971 205 PRLQHANCAVVLSAVKMILQQMELITSTDV----VRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPT-----I 274 (862)
Q Consensus 205 ~~l~~~n~aV~~eai~~i~~~~~~~~~~~~----~~~~~~~~~~~L~~lls-~~~~iry~aL~~l~~i~~~~p~-----~ 274 (862)
..|+-.|+-|...|+.+++.+.+. .+|+. ...+..+--.-|..||+ .-|.+|-.|...+.++...+-. +
T Consensus 181 R~L~a~Ns~VrsnAa~lf~~~fP~-~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i 259 (1005)
T KOG1949|consen 181 RGLKARNSEVRSNAALLFVEAFPI-RDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTI 259 (1005)
T ss_pred HhhccCchhhhhhHHHHHHHhccC-CCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 457889999999999999998763 35443 23334444444567785 4689999999999999887632 3
Q ss_pred hhccce-EEEecCCCc-HHHHHHHHHHHHHhcCcCcHHHHHHHHH----HhhhhccHHHHHHHHHHHHHHH-HhhhHhHH
Q 002971 275 LAHEIK-VFFCKYNDP-IYVKMEKLEIMIKLASDRNIDQVLLEFK----EYATEVDVDFVRKAVRAIGRCA-IKLERAAE 347 (862)
Q Consensus 275 ~~~~~~-~~~~l~~d~-~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~----~y~~~~d~~~~~~~i~~I~~la-~k~~~~~~ 347 (862)
+..-++ ++.-...|. .++|....+=|..|..-.-...+++.++ .-+.+....+|-.++.-|.++- .|+.+..+
T Consensus 260 ~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~~f~~ 339 (1005)
T KOG1949|consen 260 LIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAAKFWK 339 (1005)
T ss_pred HHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhhhhhc
Confidence 333333 343232233 5688877777766655444444444443 3344555556666666555442 23333222
Q ss_pred HH-HHHHHHHHhhhcchhHHHHHHHHHHHHHhCcccHHHHHHHHHHhhccCCchHHHHHHHHHHhhcc
Q 002971 348 RC-ISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYA 414 (862)
Q Consensus 348 ~~-v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~ 414 (862)
-| +|.++.-|....-++..-.+.-|..+.--...--++.+++....+. ..+.|.+...-.+|+.+
T Consensus 340 I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k~ee~~c~Rc~tlv~--~n~~A~~rf~~~l~~~~ 405 (1005)
T KOG1949|consen 340 ICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVNKPEEVWCERCVTLVQ--MNHAAARRFYQYLHEHT 405 (1005)
T ss_pred cccHHHHHHHHhccccHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHc--cCHHHHHHHHHHhcccc
Confidence 22 4556555655554444433333322211000112233443333332 14555555566666665
No 143
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=88.31 E-value=5 Score=39.75 Aligned_cols=155 Identities=21% Similarity=0.287 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHhh-ccc--------ccccc------chHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHH
Q 002971 97 VRKTAAICVAKLYDI-NAE--------LVEDR------GFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSH 161 (862)
Q Consensus 97 VRk~A~~~l~kl~~~-~p~--------~~~~~------~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~ 161 (862)
||-.|+.|+.-+.+. +|- ++++. .....+.-++.|.++.|..+|+.++..+.+.. +.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs-k~------- 73 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGS-KP------- 73 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHcc-HH-------
Confidence 788888888888876 332 22221 23345666789999999999999999887653 11
Q ss_pred HHHHHHHHhc----cCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcC-CChHHHHHHHHHHHHhhhccCChHHHH
Q 002971 162 TLSKLLTALN----ECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQH-ANCAVVLSAVKMILQQMELITSTDVVR 236 (862)
Q Consensus 162 ~~~~Ll~~l~----~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~-~n~aV~~eai~~i~~~~~~~~~~~~~~ 236 (862)
.+..- +.-. .+.++...-- .. ..++-..+...+++ .++.++-++.|++..+....+-..+-.
T Consensus 74 ~L~~A-e~~~~~~~sFtslS~tLa-~~-----------i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~ 140 (182)
T PF13251_consen 74 FLAQA-EESKGPSGSFTSLSSTLA-SM-----------IMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPP 140 (182)
T ss_pred HHHHH-HhcCCCCCCcccHHHHHH-HH-----------HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCH
Confidence 11111 1000 1122221100 00 01111223333433 455677777777665533222111112
Q ss_pred HHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhCh
Q 002971 237 NLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRP 272 (862)
Q Consensus 237 ~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p 272 (862)
.+...++..+..++ ++|++++-.+|-.+..+....+
T Consensus 141 ~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 141 GLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred hHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence 33333444444444 6899999999999998887644
No 144
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=88.22 E-value=21 Score=42.55 Aligned_cols=74 Identities=14% Similarity=0.247 Sum_probs=49.7
Q ss_pred ChhHHHHHHHHHHHHHhhChhhhhccceEEEecCCCcHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhhh-hccHHHHH
Q 002971 253 EPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYAT-EVDVDFVR 329 (862)
Q Consensus 253 ~~~iry~aL~~l~~i~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~-~~d~~~~~ 329 (862)
++.+|..|+.+|.+++..+|..+.+.+-.+|.-..+|..+|..|+.+|... +++ ..++..+..++. +.+.+++.
T Consensus 493 ~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t-~P~--~~~l~~ia~~l~~E~~~QV~s 567 (574)
T smart00638 493 STFIRLAAILALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVLVLMET-KPS--VALLQRIAELLNKEPNLQVAS 567 (574)
T ss_pred CHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCCCCChHHHHHHHHHHHhc-CCC--HHHHHHHHHHHhhcCcHHHHH
Confidence 457999999999999988898777655444455577888999999888874 232 233444444443 34444443
No 145
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=86.94 E-value=1.5 Score=39.88 Aligned_cols=67 Identities=27% Similarity=0.428 Sum_probs=48.4
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHhhcccccCCHHHHHHH------HhhhCCCCCHHHHHHHHHHHHHHhh
Q 002971 385 SIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLES------FLESFPEEPAQVQLQLLTATVKLFL 451 (862)
Q Consensus 385 ~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~~~~~l~~------~~~~~~~e~~~v~~~iLta~~Kl~~ 451 (862)
.++..|++.|+.-.+|...+.++.=||||....++...+++. +.+-...++++||...|.|+-|+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 567788888865557788889999999999888776665543 2344456788899888888888764
No 146
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=86.71 E-value=47 Score=37.01 Aligned_cols=262 Identities=13% Similarity=0.133 Sum_probs=143.0
Q ss_pred HHHhHhccCC-CcchHHHHHHHHHHhcCCC--------CcHHHHHHHHHH--hhcCCCCH----HHHhHHHHHhcCCChh
Q 002971 12 TDVVNCMQTE-NLELKKLVYLYLINYAKSQ--------PDLAILAVNTFV--KDSQDPNP----LIRALAVRTMGCIRVD 76 (862)
Q Consensus 12 ~~vv~l~~s~-~~~~Kkl~Yl~l~~~~~~~--------~el~~L~intl~--kDl~~~n~----~ir~lALr~l~~i~~~ 76 (862)
++.++++++. +....-|++-.+--.++.+ ..+..-.+|-++ ||+.++.+ +-|+.-|-.+-..+..
T Consensus 226 ~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDe 305 (604)
T KOG4500|consen 226 FMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDE 305 (604)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCch
Confidence 3445555443 3444445544433333322 124445566665 47776544 4455555555555655
Q ss_pred hhH-----HHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccc--cccchHHHHHHhhc-----CCChhHHHHHHHHH
Q 002971 77 KIT-----EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELV--EDRGFLESLKDLIS-----DNNPMVVANAVAAL 144 (862)
Q Consensus 77 ~~~-----~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~--~~~~~~~~l~~lL~-----d~d~~V~~~a~~~l 144 (862)
.|- +.+...+...+.+.+...--.+++++..+.|.+...+ .+.++.+.|.++|. |.|..++.+++++|
T Consensus 306 SMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsAL 385 (604)
T KOG4500|consen 306 SMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSAL 385 (604)
T ss_pred HHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHH
Confidence 543 2366677888888888899999999999999776432 23478888888774 56778888999999
Q ss_pred HHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHH------HHHHHHHHHhhcCCChH-HHHH
Q 002971 145 AEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREA------ENIVERVTPRLQHANCA-VVLS 217 (862)
Q Consensus 145 ~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~------~~il~~v~~~l~~~n~a-V~~e 217 (862)
..+.---+....-+..+....++..+.--.|-.+-+++..++...-.-+.-+ .++++++...-++.+.+ |.-|
T Consensus 386 Rnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gE 465 (604)
T KOG4500|consen 386 RNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGE 465 (604)
T ss_pred HhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhh
Confidence 8764211110011111234455555555555555666666654432222112 23456666666777764 8889
Q ss_pred HHHHHHHhhhccCChHHHHHHHH-hcccchhhcc-cCChhHHHHHHHHHHHHHhhChh
Q 002971 218 AVKMILQQMELITSTDVVRNLCK-KMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPT 273 (862)
Q Consensus 218 ai~~i~~~~~~~~~~~~~~~~~~-~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~ 273 (862)
.-|+..-+.......+.+..+.+ ..+..+++.+ +.+-+++--+|-++..+...++.
T Consensus 466 SnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~yl~ 523 (604)
T KOG4500|consen 466 SNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTESKYLI 523 (604)
T ss_pred hhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHHhcc
Confidence 88887755321001111111110 0011233433 33445666666666666665554
No 147
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=86.69 E-value=0.97 Score=38.03 Aligned_cols=61 Identities=18% Similarity=0.303 Sum_probs=36.7
Q ss_pred CCeeEEEEEEEecCCCCcccceeeecccccCcccCCC-CCCCcCCCCCeeeEEEeeeecCCCC
Q 002971 657 DGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGA-LQVPQLQPGTSGRTLLPMVLFQNMS 718 (862)
Q Consensus 657 ~~~~~l~l~~~N~s~~~it~f~~q~~~n~~gl~~~~~-~~~~~l~pg~~~~~~i~i~~~~~~~ 718 (862)
|....+.++++|....++.++.+.++. +.|+..... ..++.|+||++.++.+.|.......
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~~-P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~ 65 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLSL-PEGWTVSASPASVPSLPPGESVTVTFTVTVPADAA 65 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE---TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEeC-CCCccccCCccccccCCCCCEEEEEEEEECCCCCC
Confidence 345689999999999999999998886 458872222 2355999999999988887765433
No 148
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.66 E-value=90 Score=38.50 Aligned_cols=170 Identities=15% Similarity=0.159 Sum_probs=97.0
Q ss_pred HHHHHHHHHHhhC-hhhhhccc----eEEE-----ecCCCcHHHHHHHHHHHHHhcC----cCcHHHHHHHHH-Hhh---
Q 002971 259 VALRNINLIVQRR-PTILAHEI----KVFF-----CKYNDPIYVKMEKLEIMIKLAS----DRNIDQVLLEFK-EYA--- 320 (862)
Q Consensus 259 ~aL~~l~~i~~~~-p~~~~~~~----~~~~-----~l~~d~~~Ik~~~L~lL~~l~~----~~Nv~~Iv~eL~-~y~--- 320 (862)
.+++.+..++.++ ++.|.+-+ .+|. ...++++--|--||.++..+++ .+-++..++.++ .|+
T Consensus 391 Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~ 470 (1010)
T KOG1991|consen 391 AALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPE 470 (1010)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHh
Confidence 5677778888777 55444322 2222 0234556667778887777663 223334444332 222
Q ss_pred -hhccHHHHHHHHHHHHHHH-Hhhh--HhHHHHHHHHHHHHhh-hcchhHHHHHHHHHHHHHhCcccHHHH-------HH
Q 002971 321 -TEVDVDFVRKAVRAIGRCA-IKLE--RAAERCISVLLELIKI-KVNYVVQEAIIVIKDIFRRYPNTYESI-------IA 388 (862)
Q Consensus 321 -~~~d~~~~~~~i~~I~~la-~k~~--~~~~~~v~~ll~ll~~-~~~~v~~e~i~~l~~i~~~~p~~~~~~-------i~ 388 (862)
++.-..+|.+++.-++..+ +.|+ ......++...+.+.. +.--|.-|+...++-.+++.+...+++ .+
T Consensus 471 f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq 550 (1010)
T KOG1991|consen 471 FQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQ 550 (1010)
T ss_pred hcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHH
Confidence 3344557888999998888 5553 3444556666666663 333466788888888888877654433 22
Q ss_pred HHHHhhccCCchHHHHHHHHHHhhcccccCC-HHHHHHHHh
Q 002971 389 TLCESLDTLDEPEAKASMIWIIGEYAERIDN-ADELLESFL 428 (862)
Q Consensus 389 ~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~-~~~~l~~~~ 428 (862)
.|.......+....-.++=-++++|++.+.- +.++...+.
T Consensus 551 ~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La 591 (1010)
T KOG1991|consen 551 ELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLA 591 (1010)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Confidence 3333333333222334555788999987753 455444443
No 149
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.22 E-value=1.2e+02 Score=39.36 Aligned_cols=187 Identities=14% Similarity=0.122 Sum_probs=102.4
Q ss_pred HhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHHHh----cccchhhcccCChhHHHHHHHHHHHHHhhChhhhhccce
Q 002971 205 PRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKK----MAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIK 280 (862)
Q Consensus 205 ~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~----~~~~L~~lls~~~~iry~aL~~l~~i~~~~p~~~~~~~~ 280 (862)
--|++.+..++.+|++++..++. ++.. .+... ....|.++-..+.++|..+++........+|.....-..
T Consensus 266 ~eL~se~~~~Rl~a~~lvg~~~~---~~~~--~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~ 340 (1266)
T KOG1525|consen 266 FELLSEQEEVRLKAVKLVGRMFS---DKDS--QLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTI 340 (1266)
T ss_pred HHHhcchHHHHHHHHHHHHHHHh---cchh--hhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHH
Confidence 34567888999999999987742 2211 11000 011233454578899999999999988888865432211
Q ss_pred EE-EecCCCcHHHHHHHHHHHHHhcCcCc----HHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHh-h----------hH
Q 002971 281 VF-FCKYNDPIYVKMEKLEIMIKLASDRN----IDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIK-L----------ER 344 (862)
Q Consensus 281 ~~-~~l~~d~~~Ik~~~L~lL~~l~~~~N----v~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k-~----------~~ 344 (862)
.. .+..+-|.-+|.+..-+.....-..- +..++..+.+=+++--..+|..++..+..+-.+ | .+
T Consensus 341 ~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~ 420 (1266)
T KOG1525|consen 341 LLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITP 420 (1266)
T ss_pred HHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCcccccc
Confidence 11 11123334444444322222111111 111444444555566778888888888776654 1 24
Q ss_pred hHHHHHHHHHHHHhhhcchhHHHHHH-HHHHHHHhCcccHHHHHHHHHHhhccC
Q 002971 345 AAERCISVLLELIKIKVNYVVQEAII-VIKDIFRRYPNTYESIIATLCESLDTL 397 (862)
Q Consensus 345 ~~~~~v~~ll~ll~~~~~~v~~e~i~-~l~~i~~~~p~~~~~~i~~L~~~l~~~ 397 (862)
..+|+-+.++.++-.++.... ..+. .+.+.+.-++---+.-+..|+..+..+
T Consensus 421 ~~swIp~kLL~~~y~~~~~~r-~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~ 473 (1266)
T KOG1525|consen 421 PFSWIPDKLLHLYYENDLDDR-LLVERILAEYLVPYPLSTQERMKHLYQLLAGL 473 (1266)
T ss_pred cccccchhHHhhHhhccccHH-HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcc
Confidence 567999999999887764333 2333 344444444322233455555555443
No 150
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=86.00 E-value=2.5 Score=49.46 Aligned_cols=160 Identities=18% Similarity=0.169 Sum_probs=95.3
Q ss_pred HHhHhccCCCcchHHHHHHHHHH-hcCC-CCcHHHHHHHHHHh-hcCCCCHHHHhHHHHHhcCCC--hhhhHHHHHHHHH
Q 002971 13 DVVNCMQTENLELKKLVYLYLIN-YAKS-QPDLAILAVNTFVK-DSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQ 87 (862)
Q Consensus 13 ~vv~l~~s~~~~~Kkl~Yl~l~~-~~~~-~~el~~L~intl~k-Dl~~~n~~ir~lALr~l~~i~--~~~~~~~l~~~v~ 87 (862)
-|-+++..+|..+|+-|-+.+-. |.-. +.. +|-.+.. ..+|.|..+|-.|...||-+. .|+.++.. .
T Consensus 523 lI~el~~dkdpilR~~Gm~t~alAy~GTgnnk----air~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~----V 594 (929)
T KOG2062|consen 523 LIKELLRDKDPILRYGGMYTLALAYVGTGNNK----AIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPST----V 594 (929)
T ss_pred HHHHHhcCCchhhhhhhHHHHHHHHhccCchh----hHHHhhcccccccchHHHHHHHHHheeeEecChhhchHH----H
Confidence 34457888888888877655433 2222 211 2333222 356889999999999998764 67666543 4
Q ss_pred hhhC-CCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHH-hhcCCCC--cccccHHHH
Q 002971 88 RCLK-DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEI-EENSSRP--IFEITSHTL 163 (862)
Q Consensus 88 ~~l~-d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i-~~~~~~~--~~~l~~~~~ 163 (862)
.+|. +-||+||=-||+|+.-...-... - .-++.|..|..|..--|.-.|+.++.-| +++.... ...-+.+.+
T Consensus 595 ~lLses~N~HVRyGaA~ALGIaCAGtG~-~---eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l 670 (929)
T KOG2062|consen 595 SLLSESYNPHVRYGAAMALGIACAGTGL-K---EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQL 670 (929)
T ss_pred HHHhhhcChhhhhhHHHHHhhhhcCCCc-H---HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHH
Confidence 4444 57999999999998855542222 1 2678888888898888887777666544 3333221 233333445
Q ss_pred HHHHHHh-cc-CChhHHHHHHHH
Q 002971 164 SKLLTAL-NE-CTEWGQVFILDA 184 (862)
Q Consensus 164 ~~Ll~~l-~~-~~~w~q~~iL~~ 184 (862)
.+++.-- .+ ...++-+..=.+
T Consensus 671 ~kvI~dKhEd~~aK~GAilAqGi 693 (929)
T KOG2062|consen 671 EKVINDKHEDGMAKFGAILAQGI 693 (929)
T ss_pred HHHhhhhhhHHHHHHHHHHHhhh
Confidence 5554432 22 345665544333
No 151
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=85.71 E-value=5.2 Score=44.60 Aligned_cols=138 Identities=15% Similarity=0.214 Sum_probs=97.2
Q ss_pred hHHHhHhccCCCcchHHHHHHHHHHhcCCCCc--------HHHHHHHHHHhhcCCCCHHHHhHHHHHhcCC-----Chhh
Q 002971 11 FTDVVNCMQTENLELKKLVYLYLINYAKSQPD--------LAILAVNTFVKDSQDPNPLIRALAVRTMGCI-----RVDK 77 (862)
Q Consensus 11 f~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~e--------l~~L~intl~kDl~~~n~~ir~lALr~l~~i-----~~~~ 77 (862)
...+..++-+++-+++-.||=.+..+...... +-.+++=+|.+|.+ ++.-|--||+.+-.+ +..+
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~--~~~ER~QALkliR~~l~~~~~~~~ 104 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNK--NDVEREQALKLIRAFLEIKKGPKE 104 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCC--ChHHHHHHHHHHHHHHHhcCCccc
Confidence 33444344455588888999887766544322 34556667777764 577788888776543 3456
Q ss_pred hHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhc
Q 002971 78 ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (862)
Q Consensus 78 ~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 150 (862)
+-..++..|..+..+.+.-.|..|+.++..+.-.+|+++-..+=+..|.+.+.|....+.-+.+.++..+...
T Consensus 105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~ 177 (371)
T PF14664_consen 105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDS 177 (371)
T ss_pred CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCC
Confidence 6778888899999999999999999999999999999986555557777777676555555566666665443
No 152
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=85.27 E-value=9.2 Score=38.36 Aligned_cols=107 Identities=20% Similarity=0.247 Sum_probs=73.8
Q ss_pred CcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHH--------------HHHHhhhCCCChHHHHHHHHHHH
Q 002971 41 PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLC--------------DPLQRCLKDDDPYVRKTAAICVA 106 (862)
Q Consensus 41 ~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~--------------~~v~~~l~d~~~yVRk~A~~~l~ 106 (862)
-++.++++.-+.+. .++..........+..+.+.++++.+. +.+.+-+.|.++++||.|..++.
T Consensus 53 ~~~~~lal~~~~~~--~~~~~~~~~~~~~i~~~~~W~~~D~~~~~~~~~~~~~~~~~~~~~~w~~s~~~~~rR~~~~~~~ 130 (197)
T cd06561 53 REAQYLALDLLDKK--ELKEEDLERFEPWIEYIDNWDLVDSLCANLLGKLLYAEPELDLLEEWAKSENEWVRRAAIVLLL 130 (197)
T ss_pred HHHHHHHHHHHHHh--cCCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCcchHHHHHHHhCCcHHHHHHHHHHHH
Confidence 55555555555544 444444455555555555555554332 35677778899999999999999
Q ss_pred HHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCC
Q 002971 107 KLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (862)
Q Consensus 107 kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~ 152 (862)
+.+....+ .. .+++.+..++.|.+..|.-+.--+|.++....+
T Consensus 131 ~~~~~~~~-~~--~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~ 173 (197)
T cd06561 131 RLIKKETD-FD--LLLEIIERLLHDEEYFVQKAVGWALREYGKKDP 173 (197)
T ss_pred HHHHhccc-HH--HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCH
Confidence 98887222 21 367888889999999999988888999987754
No 153
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=84.94 E-value=34 Score=38.88 Aligned_cols=187 Identities=13% Similarity=0.206 Sum_probs=103.3
Q ss_pred HHHHhhhhccHHHHHHHHHHHHHHHHhhhH----hHHHHHHHHHHHHhhhc-chhHHHHHHHHHHHHHhCc-ccHHHHHH
Q 002971 315 EFKEYATEVDVDFVRKAVRAIGRCAIKLER----AAERCISVLLELIKIKV-NYVVQEAIIVIKDIFRRYP-NTYESIIA 388 (862)
Q Consensus 315 eL~~y~~~~d~~~~~~~i~~I~~la~k~~~----~~~~~v~~ll~ll~~~~-~~v~~e~i~~l~~i~~~~p-~~~~~~i~ 388 (862)
.|++-+.+.|+.=|..+..-+.++-.|+.. -...+.+.+.+++.... .+-..|+...+..|+.... .+.+.-..
T Consensus 137 ~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~ 216 (409)
T PF01603_consen 137 KLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQ 216 (409)
T ss_dssp HHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHH
Confidence 333444444544444333333333334332 22344455555555433 3456788888888888643 23222222
Q ss_pred HHHHh---hccCC-chHHHHHHHHHHhhcccccCC-HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHH
Q 002971 389 TLCES---LDTLD-EPEAKASMIWIIGEYAERIDN-ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQ 463 (862)
Q Consensus 389 ~L~~~---l~~~~-~~~~~~~~~wilGEy~~~i~~-~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~~~~~~~~~i~ 463 (862)
.+.+. |.... .+.-..-+..++..|.+.-+. +..+++.+++.|+..++.-+...|.-+..+....+++.......
T Consensus 217 fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~ 296 (409)
T PF01603_consen 217 FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMV 296 (409)
T ss_dssp HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 22222 22222 122245677777777765443 67899999999999999999999999999988776532333333
Q ss_pred ---HHHHhcccCCCChHHHHHHHHHH------HHhcCCHHHHHHhhcc
Q 002971 464 ---VVLNNATVETDNPDLRDRAYIYW------RLLSTDPEAAKDVVLA 502 (862)
Q Consensus 464 ---~~l~~~~~~s~~~dvrdRA~~y~------~ll~~~~~~~~~~v~~ 502 (862)
+.+..|. +|.+..|-+||..+| .+++.+.+..-.++++
T Consensus 297 ~lf~~la~ci-~S~h~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~ 343 (409)
T PF01603_consen 297 PLFKRLAKCI-SSPHFQVAERALYFWNNEYFLSLISQNSRVILPIIFP 343 (409)
T ss_dssp HHHHHHHHHH-TSSSHHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHCCHHHHHHHHhChHHHHHHHHH
Confidence 3444565 689999999999887 3334444444444443
No 154
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.18 E-value=1e+02 Score=37.34 Aligned_cols=240 Identities=16% Similarity=0.209 Sum_probs=139.6
Q ss_pred cHHHHHHHHHHhhcCC----CCHHHHhHHHHHhcCCC---hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccc
Q 002971 42 DLAILAVNTFVKDSQD----PNPLIRALAVRTMGCIR---VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE 114 (862)
Q Consensus 42 el~~L~intl~kDl~~----~n~~ir~lALr~l~~i~---~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~ 114 (862)
|+.--.+|.+.-||.+ .+|..++-|++.+-..| .++.+=.++|.+.+.|...++-|-+-||.|+=|+.-...+
T Consensus 452 dv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~ 531 (960)
T KOG1992|consen 452 DVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVREN 531 (960)
T ss_pred cHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccC
Confidence 4555677888999988 45899999999988777 4666667788888889999999999999999998754333
Q ss_pred ----cccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhc----cCChhHHHHHHHHHh
Q 002971 115 ----LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALN----ECTEWGQVFILDALS 186 (862)
Q Consensus 115 ----~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~----~~~~w~q~~iL~~L~ 186 (862)
+.....+ -|.|.. .+..|.+.+. .-+|++--.|+|++.
T Consensus 532 ~~~~if~~~~i-----------ap~~~~-----------------------ll~nLf~a~s~p~~~EneylmKaImRii~ 577 (960)
T KOG1992|consen 532 SNAKIFGAEDI-----------APFVEI-----------------------LLTNLFKALSLPGKAENEYLMKAIMRIIS 577 (960)
T ss_pred ccccccchhhc-----------chHHHH-----------------------HHHHHHHhccCCcccccHHHHHHHHHHHH
Confidence 1110001 111111 1122222221 125666666666665
Q ss_pred hcc----cccHHHHHHHHHHHHHhhcCCC----hHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhcccCC-hhHH
Q 002971 187 RYK----AADAREAENIVERVTPRLQHAN----CAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAE-PEIQ 257 (862)
Q Consensus 187 ~~~----~~~~~~~~~il~~v~~~l~~~n----~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~lls~~-~~ir 257 (862)
... |.-+.....+.+.+...-++.+ ..-+||++.+++...-. .+++++..+...+.|.+...++.| .|.-
T Consensus 578 i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~-~~~~~vs~~e~aL~p~fq~Il~eDI~Efi 656 (960)
T KOG1992|consen 578 ILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCK-ANPSAVSSLEEALFPVFQTILSEDIQEFI 656 (960)
T ss_pred hCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhc-cCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 1112222233333333334432 26889999888875432 356666666666777667777654 3544
Q ss_pred HHHHHHHHHHHhhChhhhh-ccceEEEecCCCcHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhhhhccHHHH
Q 002971 258 YVALRNINLIVQRRPTILA-HEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFV 328 (862)
Q Consensus 258 y~aL~~l~~i~~~~p~~~~-~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~ 328 (862)
=.+++.+..++..+..... .+...|-++-++. |- ....|+..++.-|..++......+.
T Consensus 657 PYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~----------lW--~r~gNipalvrLl~aflk~g~~~~~ 716 (960)
T KOG1992|consen 657 PYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPN----------LW--KRSGNIPALVRLLQAFLKTGSQIVE 716 (960)
T ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHH----------HH--hhcCCcHHHHHHHHHHHhcCchhhc
Confidence 4467888877766533221 1122222221111 11 2467888888888888776554444
No 155
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=84.00 E-value=9.2 Score=38.24 Aligned_cols=134 Identities=12% Similarity=0.124 Sum_probs=88.2
Q ss_pred HHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCcccHHHHHH
Q 002971 309 IDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIA 388 (862)
Q Consensus 309 v~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~ 388 (862)
++.-++.+++.+.+.+..++..+++-|+.+...-=-.+..|+.+++-|..+....+...+...++.+..++|+.-..
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~--- 82 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES--- 82 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH---
Confidence 34556667777777888999999988887776544456689999999999988899998988999998888764221
Q ss_pred HHHHhhccCCchHHHHHHHHHHhhcccccC----CHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCC
Q 002971 389 TLCESLDTLDEPEAKASMIWIIGEYAERID----NADELLESFLESFPEEPAQVQLQLLTATVKLFLKKP 454 (862)
Q Consensus 389 ~L~~~l~~~~~~~~~~~~~wilGEy~~~i~----~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~~ 454 (862)
.+.+ .++.+.-+...-+++... .....+..++.-+. .+...|-..|++++|.|....
T Consensus 83 ~~~~--------gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~-~~r~~R~~Fl~~l~k~f~~~~ 143 (187)
T PF12830_consen 83 RYSE--------GIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR-SNRKSRRKFLKSLLKQFDFDL 143 (187)
T ss_pred HHHH--------HHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh-cccHhHHHHHHHHHHHHHhhc
Confidence 1111 112223233222222211 13445555555444 566777888888888887654
No 156
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=83.67 E-value=75 Score=35.02 Aligned_cols=63 Identities=10% Similarity=0.091 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhChhhhhccce-EEEecCCCcHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhhh
Q 002971 259 VALRNINLIVQRRPTILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYAT 321 (862)
Q Consensus 259 ~aL~~l~~i~~~~p~~~~~~~~-~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~ 321 (862)
+|-+-|-+.-...|++-..-+. .|.|..++|..||+.|+.=|-.+|..++...+.++|.+.+.
T Consensus 43 lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 43 LASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLN 106 (460)
T ss_pred HHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHH
Confidence 3444444444556655433333 45677789999999999999999999998888887766554
No 157
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=83.00 E-value=1e+02 Score=35.91 Aligned_cols=125 Identities=25% Similarity=0.212 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCC----C--h---hhhHHHHHHHHHhhhCCCCh
Q 002971 25 LKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI----R--V---DKITEYLCDPLQRCLKDDDP 95 (862)
Q Consensus 25 ~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i----~--~---~~~~~~l~~~v~~~l~d~~~ 95 (862)
-|.++-|.-..+++.-.+-.+-++|++.--=+ ||.+-.--|+++..+ . . .+++...+..+.+.+.+++-
T Consensus 28 rk~~a~l~~~~t~~~f~~~flr~vn~IL~~Kk--~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk 105 (885)
T COG5218 28 RKSLAELMEMLTAHEFSEEFLRVVNTILACKK--NPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDK 105 (885)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhhcccc--CCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcch
Confidence 34555566666776666667778888754322 233323333333322 1 2 45778888889999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccc--cchHHHHHHhhcCCChhHHHHHHHHHHHHhhcC
Q 002971 96 YVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (862)
Q Consensus 96 yVRk~A~~~l~kl~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 151 (862)
-||+..+.-+..+...-.++=+. .+++..|.+-+-|+.+.|...|+.+|+......
T Consensus 106 ~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~ 163 (885)
T COG5218 106 KVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEME 163 (885)
T ss_pred hHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc
Confidence 99999998888887654432111 256677777788999999999999998876543
No 158
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=82.75 E-value=1.5e+02 Score=40.07 Aligned_cols=128 Identities=15% Similarity=0.213 Sum_probs=85.8
Q ss_pred CcchHHHHHHHHHHhcCCC---CcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC-----hhh-----hHHHHHHHHHh
Q 002971 22 NLELKKLVYLYLINYAKSQ---PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-----VDK-----ITEYLCDPLQR 88 (862)
Q Consensus 22 ~~~~Kkl~Yl~l~~~~~~~---~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~-----~~~-----~~~~l~~~v~~ 88 (862)
-|.+.||+-+...+.-+.. +.+=-.+.+.|.+=-.++|..++..|+.+|..+. ..| +-+.+..++..
T Consensus 1110 ~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~ 1189 (1780)
T PLN03076 1110 VFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVI 1189 (1780)
T ss_pred hhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHH
Confidence 4667777777665554332 3333345666777666778888888877654432 223 22356666666
Q ss_pred hhCC-CChHHHHHHHHHHHHHHhhccccccccchHHHH---HHhhcCCChhHHHHHHHHHHHHhhc
Q 002971 89 CLKD-DDPYVRKTAAICVAKLYDINAELVEDRGFLESL---KDLISDNNPMVVANAVAALAEIEEN 150 (862)
Q Consensus 89 ~l~d-~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l---~~lL~d~d~~V~~~a~~~l~~i~~~ 150 (862)
.+.+ .++-||...+-|+..|.....+.+.. ||-..+ .....|+++.++..|+-.+..|..+
T Consensus 1190 im~~s~~~eVrE~ILeCv~qmI~s~~~nIkS-GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d 1254 (1780)
T PLN03076 1190 VMRKSNAVEIRELIIRCVSQMVLSRVNNVKS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRE 1254 (1780)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHhhhhc-CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHh
Confidence 5554 78899999999999999887777764 885544 3345688888888888888777654
No 159
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.66 E-value=8.5 Score=40.82 Aligned_cols=120 Identities=13% Similarity=0.202 Sum_probs=84.0
Q ss_pred HHHHHHHHHhcCCC-CcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC--hhh----hHHHHHHHHHhhhCCCChHHHH
Q 002971 27 KLVYLYLINYAKSQ-PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--VDK----ITEYLCDPLQRCLKDDDPYVRK 99 (862)
Q Consensus 27 kl~Yl~l~~~~~~~-~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~--~~~----~~~~l~~~v~~~l~d~~~yVRk 99 (862)
..-|+...+|-.-+ || .+.+...+-|.|.|-...+-+|.+|.++. .+| +...++..|.+.++....-|-|
T Consensus 71 ~~e~~~sk~l~~fd~p~---~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~Vsr 147 (334)
T KOG2933|consen 71 SVEYIVSKNLSPFDDPE---AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSR 147 (334)
T ss_pred cHHHhhhcccCccCcHH---HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 55677777765543 45 46677788899999999998888887654 223 3345677888889999999999
Q ss_pred HHHHHHHHHHhhccccccccchHHHHHHhhc---CCChhHHHHHHHHHHHHhhc
Q 002971 100 TAAICVAKLYDINAELVEDRGFLESLKDLIS---DNNPMVVANAVAALAEIEEN 150 (862)
Q Consensus 100 ~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~---d~d~~V~~~a~~~l~~i~~~ 150 (862)
+|++|+.-+|..+.+.+.+ ..-..+..||. +++--|.-.|-.+|..+..+
T Consensus 148 aA~~t~~difs~ln~~i~~-~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~ 200 (334)
T KOG2933|consen 148 AACMTLADIFSSLNNSIDQ-ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNH 200 (334)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhc
Confidence 9999999999987776654 23344445553 34556666666666665443
No 160
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=82.21 E-value=1.9 Score=31.54 Aligned_cols=39 Identities=18% Similarity=0.338 Sum_probs=22.1
Q ss_pred HHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHH
Q 002971 104 CVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVA 142 (862)
Q Consensus 104 ~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~ 142 (862)
|+..+...+|+++....+.+.+...|.|+++.|.-+|+-
T Consensus 2 ~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ 40 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVD 40 (42)
T ss_pred hHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHH
Confidence 344555556665554445555666666666666655544
No 161
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=81.68 E-value=51 Score=37.16 Aligned_cols=162 Identities=18% Similarity=0.199 Sum_probs=74.9
Q ss_pred cHHHHHHHHHHHHHhcCc-------CcHHHHHHHHHHhhhh-ccHHHHHHHHHHHHHHHHhh----hHhHHHHHHHHHHH
Q 002971 289 PIYVKMEKLEIMIKLASD-------RNIDQVLLEFKEYATE-VDVDFVRKAVRAIGRCAIKL----ERAAERCISVLLEL 356 (862)
Q Consensus 289 ~~~Ik~~~L~lL~~l~~~-------~Nv~~Iv~eL~~y~~~-~d~~~~~~~i~~I~~la~k~----~~~~~~~v~~ll~l 356 (862)
..+=+..+|.=|..|..+ ++..+|+.-+.+-+.+ .|...+..+.+-|+.+...- ..+.+-.+..+++-
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Lea 379 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEA 379 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHH
Confidence 444555666534443332 2355666666666666 44445555566666554432 22333333333333
Q ss_pred HhhhcchhHHHHHHHHHHHHH-hCcccHHHHHHHHHHhhccCCchHHHHHHHHHHhhcccccCC------HHHHHHHHhh
Q 002971 357 IKIKVNYVVQEAIIVIKDIFR-RYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN------ADELLESFLE 429 (862)
Q Consensus 357 l~~~~~~v~~e~i~~l~~i~~-~~p~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~------~~~~l~~~~~ 429 (862)
-.+..+.+...+......++. ..|.. .|..++..|-..++|.+.+ ++-++-+-.+.+.- .+|+.--+++
T Consensus 380 a~ds~~~v~~~Aeed~~~~las~~P~~---~I~~i~~~Ilt~D~~~~~~-~iKm~Tkl~e~l~~EeL~~ll~diaP~~iq 455 (516)
T KOG2956|consen 380 AKDSQDEVMRVAEEDCLTTLASHLPLQ---CIVNISPLILTADEPRAVA-VIKMLTKLFERLSAEELLNLLPDIAPCVIQ 455 (516)
T ss_pred HhCCchhHHHHHHHHHHHHHHhhCchh---HHHHHhhHHhcCcchHHHH-HHHHHHHHHhhcCHHHHHHhhhhhhhHHHH
Confidence 333333333333332222222 22322 2333333333334444322 33333333333321 2345555566
Q ss_pred hCCCCCHHHHHHHHHHHHHHhhcCC
Q 002971 430 SFPEEPAQVQLQLLTATVKLFLKKP 454 (862)
Q Consensus 430 ~~~~e~~~v~~~iLta~~Kl~~~~~ 454 (862)
.|...+..||-..+-+++-++.+..
T Consensus 456 ay~S~SS~VRKtaVfCLVamv~~vG 480 (516)
T KOG2956|consen 456 AYDSTSSTVRKTAVFCLVAMVNRVG 480 (516)
T ss_pred HhcCchHHhhhhHHHhHHHHHHHHh
Confidence 6666677777776666666666654
No 162
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=81.21 E-value=4.5 Score=36.91 Aligned_cols=69 Identities=25% Similarity=0.307 Sum_probs=46.9
Q ss_pred HHHHHHhhh-CCCChHHHHHHHHHHHHHHhhcccc---ccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhc
Q 002971 82 LCDPLQRCL-KDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (862)
Q Consensus 82 l~~~v~~~l-~d~~~yVRk~A~~~l~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 150 (862)
++..+.++| .+.+|-+--.|+.=+..+.+.+|+- +.+.+.-+.+.+|+.+.|+.|...|+.++..+..+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 344455555 3457777777788888888888863 33445667788888888888888888888776543
No 163
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.16 E-value=39 Score=40.73 Aligned_cols=142 Identities=16% Similarity=0.188 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhHhHHHHHH-----H-HHHHHhhhcchhHHHHHHHHHHHHHhCcc
Q 002971 309 IDQVLLEFKEYAT-EVDVDFVRKAVRAIGRCAIKLERAAERCIS-----V-LLELIKIKVNYVVQEAIIVIKDIFRRYPN 381 (862)
Q Consensus 309 v~~Iv~eL~~y~~-~~d~~~~~~~i~~I~~la~k~~~~~~~~v~-----~-ll~ll~~~~~~v~~e~i~~l~~i~~~~p~ 381 (862)
++.++.-|..-++ +.+.++.-.+++++..+++-+|+.....|+ + +-+|+...---+.+.+++.+..|-|++|.
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~ 288 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK 288 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence 3445555555554 456788888999999999998887666555 3 33455554444677788888888888875
Q ss_pred c--HHHHHHHHHHhhccCCchHHHHHHHHHHhhcccccCC-----HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhh
Q 002971 382 T--YESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN-----ADELLESFLESFPEEPAQVQLQLLTATVKLFL 451 (862)
Q Consensus 382 ~--~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~-----~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~ 451 (862)
. +...+.....+|+-. .-.+.++++-|....|..+.. ..+.+-.+...|..++..+-.....+++|+..
T Consensus 289 AiL~AG~l~a~LsylDFF-Si~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d 364 (1051)
T KOG0168|consen 289 AILQAGALSAVLSYLDFF-SIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIAD 364 (1051)
T ss_pred HHHhcccHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 2 333333344444422 233444455555555544431 12333333444444444333344444444443
No 164
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=80.24 E-value=1e+02 Score=34.33 Aligned_cols=352 Identities=15% Similarity=0.171 Sum_probs=175.0
Q ss_pred CCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHH
Q 002971 58 PNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVV 137 (862)
Q Consensus 58 ~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~ 137 (862)
.|+.....-+.-|+.+..++.++++..-+-..|......++ +.+.+...+.-.+ |.+.+ .+|.+.|...+
T Consensus 62 ~~~~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~------lf~~~a~~~k~~~---~~~fl-~ll~r~d~~iv 131 (442)
T KOG2759|consen 62 NNAQYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVD------LFHDYAHKLKRTE---WLSFL-NLLNRQDTFIV 131 (442)
T ss_pred ccHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHH------HHHHHHHhhhccc---hHHHH-HHHhcCChHHH
Confidence 45567777788888888899999888888887776443322 3344443333222 54444 45666666555
Q ss_pred HHHHHHHHHHhhcCC----CCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHH----HHHHHHHHhh--
Q 002971 138 ANAVAALAEIEENSS----RPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE----NIVERVTPRL-- 207 (862)
Q Consensus 138 ~~a~~~l~~i~~~~~----~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~----~il~~v~~~l-- 207 (862)
.-+...+..+..... ...+.+....+..+++. ...+...++ ..++|+.+...++-... +-...+...+
T Consensus 132 ~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~-~~~~~~~~~-~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s 209 (442)
T KOG2759|consen 132 EMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQS-STNNDYIQF-AARCLQTLLRVDEYRYAFVIADGVSLLIRILAS 209 (442)
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhc-cCCCchHHH-HHHHHHHHhcCcchhheeeecCcchhhHHHHhc
Confidence 433333433332211 11122222223333222 122333333 33555544433221000 0011222222
Q ss_pred cCCChHHHHHHHHHHHHhhhccCChHHHHHHHH--hcccchhhccc---CChhHHHHHHHHHHHHHhhChhhhhccceEE
Q 002971 208 QHANCAVVLSAVKMILQQMELITSTDVVRNLCK--KMAPPLVTLLS---AEPEIQYVALRNINLIVQRRPTILAHEIKVF 282 (862)
Q Consensus 208 ~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~--~~~~~L~~lls---~~~~iry~aL~~l~~i~~~~p~~~~~~~~~~ 282 (862)
.+.+-=+.|+.+-|+-.+. . +|.+.+.+ + ++++.|..+++ ++.-+| +++-.+..++.+.
T Consensus 210 ~~~~~QlQYqsifciWlLt--F-n~~~ae~~-~~~~li~~L~~Ivk~~~KEKV~R-ivlai~~Nll~k~----------- 273 (442)
T KOG2759|consen 210 TKCGFQLQYQSIFCIWLLT--F-NPHAAEKL-KRFDLIQDLSDIVKESTKEKVTR-IVLAIFRNLLDKG----------- 273 (442)
T ss_pred cCcchhHHHHHHHHHHHhh--c-CHHHHHHH-hhccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccC-----------
Confidence 3344567777777765542 1 34433322 1 22333344442 122233 3344444444332
Q ss_pred EecCCCcHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhh--HhHHHHHHHH-HHHHhh
Q 002971 283 FCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLE--RAAERCISVL-LELIKI 359 (862)
Q Consensus 283 ~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~--~~~~~~v~~l-l~ll~~ 359 (862)
++.+.|+...-.+. ++ ++...++-|.+- .-.|.|++.++-.--..+...+- +..+.|..-+ ...|.-
T Consensus 274 -----~~~~~~k~~~~~mv-~~---~v~k~l~~L~~r-kysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~W 343 (442)
T KOG2759|consen 274 -----PDRETKKDIASQMV-LC---KVLKTLQSLEER-KYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEW 343 (442)
T ss_pred -----chhhHHHHHHHHHH-hc---CchHHHHHHHhc-CCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCC
Confidence 23444443332222 12 234444444321 12455555443322222222211 2233443332 334555
Q ss_pred hcchhHHHHHH-HHHHHHHhCcccHHHHHHHHHHhhccCCchHHHHHHHHHHhhcccccCCHHHHHHH------HhhhCC
Q 002971 360 KVNYVVQEAII-VIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLES------FLESFP 432 (862)
Q Consensus 360 ~~~~v~~e~i~-~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~~~~~l~~------~~~~~~ 432 (862)
+..|....-|. .+..+-.+ .-.++..|.+.|+.-.+|...+++++=||||....+....+++. +.+-..
T Consensus 344 SP~Hk~e~FW~eNa~rlnen----nyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Lln 419 (442)
T KOG2759|consen 344 SPVHKSEKFWRENADRLNEN----NYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLN 419 (442)
T ss_pred CccccccchHHHhHHHHhhc----cHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhc
Confidence 55666666776 33333222 23467888888887778999999999999999888776655543 345566
Q ss_pred CCCHHHHHHHHHHHHHHhh
Q 002971 433 EEPAQVQLQLLTATVKLFL 451 (862)
Q Consensus 433 ~e~~~v~~~iLta~~Kl~~ 451 (862)
.++++||...|.|+-|+-.
T Consensus 420 h~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 420 HEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred CCCchHHHHHHHHHHHHHh
Confidence 7888999888888887754
No 165
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=80.16 E-value=9.6 Score=46.07 Aligned_cols=125 Identities=20% Similarity=0.228 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCC-CCHHHHhHHHHHhcCCChhh--hHHHHHHHHHhhhCCCChHHHHHH
Q 002971 25 LKKLVYLYLINYAKSQPDLAILAVNTFVKDSQD-PNPLIRALAVRTMGCIRVDK--ITEYLCDPLQRCLKDDDPYVRKTA 101 (862)
Q Consensus 25 ~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~-~n~~ir~lALr~l~~i~~~~--~~~~l~~~v~~~l~d~~~yVRk~A 101 (862)
++--+.+.+..+.=.+.+++--.+..|.|.|+- ....+|..-+-+||.|++.= |++--+|-|-.+|.|+++.|||-+
T Consensus 947 vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRrqt 1026 (1529)
T KOG0413|consen 947 VRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIVRRQT 1026 (1529)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHHHHHH
Confidence 444556666555556667888788888888863 33456666666788887654 888889999999999999999999
Q ss_pred HHHHHHHHhhcccccc--ccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCC
Q 002971 102 AICVAKLYDINAELVE--DRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (862)
Q Consensus 102 ~~~l~kl~~~~p~~~~--~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~ 152 (862)
++-+.++.+.. .+. ..-|+..+.. |-|.++-+..-|=-.+.++.+...
T Consensus 1027 ~ilL~rLLq~~--~vKw~G~Lf~Rf~l~-l~D~~edIr~~a~f~~~~vL~~~~ 1076 (1529)
T KOG0413|consen 1027 IILLARLLQFG--IVKWNGELFIRFMLA-LLDANEDIRNDAKFYISEVLQSEE 1076 (1529)
T ss_pred HHHHHHHHhhh--hhhcchhhHHHHHHH-HcccCHHHHHHHHHHHHHHHhhcC
Confidence 99999997643 222 1012223333 347888888777777777766543
No 166
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.11 E-value=21 Score=40.34 Aligned_cols=127 Identities=18% Similarity=0.233 Sum_probs=85.1
Q ss_pred HHhhcCCCCHHHHhHHHHHhcCCCh------hhhHHHHHHHHHhhhCC-CChHHHHHHHHHHHHHHhhcc-ccccc--cc
Q 002971 51 FVKDSQDPNPLIRALAVRTMGCIRV------DKITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINA-ELVED--RG 120 (862)
Q Consensus 51 l~kDl~~~n~~ir~lALr~l~~i~~------~~~~~~l~~~v~~~l~d-~~~yVRk~A~~~l~kl~~~~p-~~~~~--~~ 120 (862)
+-.-..||+..+|++|+|.|++... ..+...+...|...|-| .+.-|-=.|+.|+.++..+-- ..+.. -+
T Consensus 263 la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ 342 (533)
T KOG2032|consen 263 LANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLN 342 (533)
T ss_pred HHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchh
Confidence 3344578999999999999998753 23445677777777776 567788888888888876422 11111 02
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccc----cHHHHHHHHHHhccCChhH
Q 002971 121 FLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI----TSHTLSKLLTALNECTEWG 177 (862)
Q Consensus 121 ~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l----~~~~~~~Ll~~l~~~~~w~ 177 (862)
...+++.+..|.++.+..+|+.++..+++-.++..-.. ..+....|+-.|.+++|..
T Consensus 343 ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v 403 (533)
T KOG2032|consen 343 IALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV 403 (533)
T ss_pred HHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH
Confidence 45678899999999999999999988887644432221 1222334444555666644
No 167
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=79.76 E-value=81 Score=32.74 Aligned_cols=146 Identities=16% Similarity=0.160 Sum_probs=73.0
Q ss_pred CCCCHHHHhHHHHHhcCCChh--hhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHH-HHH-----
Q 002971 56 QDPNPLIRALAVRTMGCIRVD--KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLES-LKD----- 127 (862)
Q Consensus 56 ~~~n~~ir~lALr~l~~i~~~--~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~-l~~----- 127 (862)
+.++|......|++|..+... ...+.+...+..+....+.-++-.+..-+.++.+.++-..+ ++.. +..
T Consensus 11 ~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~---~L~~~L~~~~~r~ 87 (234)
T PF12530_consen 11 KISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFP---FLQPLLLLLILRI 87 (234)
T ss_pred CCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHH---HHHHHHHHHHhhc
Confidence 345555666666666555432 34444444455555555544455555666666666654432 2211 111
Q ss_pred --hhc--CCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHh-ccCChhHHHHHHHHHhhcccccHHHHHHHHHH
Q 002971 128 --LIS--DNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTAL-NECTEWGQVFILDALSRYKAADAREAENIVER 202 (862)
Q Consensus 128 --lL~--d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~ 202 (862)
... +....+..+....+.+|+..+|..-. ..+..+-..+ .++++=.+..-|+.+..+++.+--+.....+.
T Consensus 88 ~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~----~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~v 163 (234)
T PF12530_consen 88 PSSFSSKDEFWECLISIAASIRDICCSRPDHGV----DLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKV 163 (234)
T ss_pred ccccCCCcchHHHHHHHHHHHHHHHHhChhhHH----HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 011 22333444444556666666554212 2233333344 56677777777777777775544344444555
Q ss_pred HHHhhc
Q 002971 203 VTPRLQ 208 (862)
Q Consensus 203 v~~~l~ 208 (862)
+.+.+.
T Consensus 164 l~~~l~ 169 (234)
T PF12530_consen 164 LQKKLS 169 (234)
T ss_pred HHHhcC
Confidence 555553
No 168
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=79.63 E-value=3 Score=43.10 Aligned_cols=57 Identities=25% Similarity=0.465 Sum_probs=49.9
Q ss_pred HHHHHhhcCC--CCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHH
Q 002971 48 VNTFVKDSQD--PNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKL 108 (862)
Q Consensus 48 intl~kDl~~--~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl 108 (862)
|.++.|-|.+ .+|++|..|..+|+.|++++-++. +++.+.|..+.||+.+..++--+
T Consensus 220 i~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~~~~v----L~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 220 IPSLIKVLLDETEHPMVRHEAAEALGAIADEDCVEV----LKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred hHHHHHHHHhhhcchHHHHHHHHHHHhhcCHHHHHH----HHHHcCCcHHHHHHHHHHHHHHH
Confidence 8888888876 579999999999999999987776 68889999999999999988543
No 169
>COG1470 Predicted membrane protein [Function unknown]
Probab=79.24 E-value=5.8 Score=44.26 Aligned_cols=73 Identities=21% Similarity=0.333 Sum_probs=55.1
Q ss_pred CCeeEEEEEEEecCCCCcccceeeecccccCcccCCCC-CCCcCCCCCeeeEEEeeeecCCCCCCCCCcceEEEEec
Q 002971 657 DGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGAL-QVPQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKN 732 (862)
Q Consensus 657 ~~~~~l~l~~~N~s~~~it~f~~q~~~n~~gl~~~~~~-~~~~l~pg~~~~~~i~i~~~~~~~~~~~~~~l~~~~k~ 732 (862)
|....+.+.+.|....|+|++.+.++.+. |+..+... .+|.|+||++.++.+.|..+....... ..+++..+.
T Consensus 396 Gee~~i~i~I~NsGna~LtdIkl~v~~Pq-gWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGd--Y~i~i~~ks 469 (513)
T COG1470 396 GEEKTIRISIENSGNAPLTDIKLTVNGPQ-GWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGD--YRITITAKS 469 (513)
T ss_pred CccceEEEEEEecCCCccceeeEEecCCc-cceEEECcccccccCCCCcceEEEEEEcCCCCCCCc--EEEEEEEee
Confidence 34567889999999999999999999765 78776653 689999999999998888776443332 345555554
No 170
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=79.02 E-value=81 Score=33.36 Aligned_cols=29 Identities=28% Similarity=0.510 Sum_probs=23.4
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHhhcCC
Q 002971 124 SLKDLISDNNPMVVANAVAALAEIEENSS 152 (862)
Q Consensus 124 ~l~~lL~d~d~~V~~~a~~~l~~i~~~~~ 152 (862)
.|..-|.+.|+.+...|+.+|.++...-+
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp 31 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLP 31 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCC
Confidence 45667888999999999999998876644
No 171
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=78.72 E-value=1.3e+02 Score=34.70 Aligned_cols=190 Identities=15% Similarity=0.136 Sum_probs=92.8
Q ss_pred HHHHHHHHHhcCcCcHHHHHHHHHHhhhhc------cHHHHHHHHHHHHHHHHhh-----hH---hHHHHHHHHHHHHhh
Q 002971 294 MEKLEIMIKLASDRNIDQVLLEFKEYATEV------DVDFVRKAVRAIGRCAIKL-----ER---AAERCISVLLELIKI 359 (862)
Q Consensus 294 ~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~------d~~~~~~~i~~I~~la~k~-----~~---~~~~~v~~ll~ll~~ 359 (862)
..+-+++-.|+.+......+.-|..++.+. +....|-+|.-++.+..+. +. .....++.+...++.
T Consensus 233 ~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~ 312 (464)
T PF11864_consen 233 KPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKS 312 (464)
T ss_pred hhHHHHHHHHHcCccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhC
Confidence 345556666666666666666666666322 3334455566565554443 11 112366777777777
Q ss_pred hcchhHHHHHHHHHHHH-HhCccc--------HHHHHHHHHHhhccCCchH--------HHHHH------HHHHhhcccc
Q 002971 360 KVNYVVQEAIIVIKDIF-RRYPNT--------YESIIATLCESLDTLDEPE--------AKASM------IWIIGEYAER 416 (862)
Q Consensus 360 ~~~~v~~e~i~~l~~i~-~~~p~~--------~~~~i~~L~~~l~~~~~~~--------~~~~~------~wilGEy~~~ 416 (862)
+.+-|..|++..+..++ +++... .-.++..+.+.+.....+. ....+ +.-+=|=++.
T Consensus 313 ~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ie~L~~~~~~ 392 (464)
T PF11864_consen 313 NSPRVDYEILLLINRLLDGKYGRELSEEDWDIILDIIEEIFDKIQPFDSWYSNSSSLDQLSSNLHSLLSSIESLYEQHDF 392 (464)
T ss_pred CCCeehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHHHHHhhccccccccccccchHHHHHHHHHHHHHHHHHHhCCCc
Confidence 77777777777777777 443211 0122222333332222111 11111 1111111111
Q ss_pred cCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCC-ChHHHHHHHHHhcccCCCChHHHHHHHHH
Q 002971 417 IDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTE-GPQQMIQVVLNNATVETDNPDLRDRAYIY 485 (862)
Q Consensus 417 i~~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~~~~-~~~~~i~~~l~~~~~~s~~~dvrdRA~~y 485 (862)
.....++++.|.+....-++..-..+| ..+.-.-.|.. +=.+.+..+++.....+.++++|-+|...
T Consensus 393 ~g~~~~~~~f~~~~~~~lp~s~~~~vl--~~~~~~~~Ps~~~W~~n~~~ll~~F~~~~~~~~vRi~aL~~ 460 (464)
T PF11864_consen 393 NGPKDKLFNFFERVHSYLPDSSALLVL--FYEERSCSPSNPDWLDNLQKLLDRFYNRDRRSEVRIKALDV 460 (464)
T ss_pred CccHHHHHHHHHHHhccCCHHHHHHHH--HHHhcccCCCChHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence 112445666565555555554444444 22222233442 12445566666544456788999888764
No 172
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=78.41 E-value=50 Score=39.30 Aligned_cols=136 Identities=20% Similarity=0.229 Sum_probs=83.2
Q ss_pred CCCcccchHHHhHhcc-CCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhc--CC--Chhhh
Q 002971 4 GKDVSSLFTDVVNCMQ-TENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMG--CI--RVDKI 78 (862)
Q Consensus 4 G~dvs~lf~~vv~l~~-s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~--~i--~~~~~ 78 (862)
|.--...+-++....+ ++.-..+|=.-+.+....--..|.+--.|+.+. .|.||..|....-+++ .. ++...
T Consensus 479 Gt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~---~dkdpilR~~Gm~t~alAy~GTgnnka 555 (929)
T KOG2062|consen 479 GTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELL---RDKDPILRYGGMYTLALAYVGTGNNKA 555 (929)
T ss_pred CcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHh---cCCchhhhhhhHHHHHHHHhccCchhh
Confidence 3333445555555433 344445555444444433333344444555554 4558888854443332 22 23444
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcC-CChhHHHHHHHHHHHHhhcC
Q 002971 79 TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISD-NNPMVVANAVAALAEIEENS 151 (862)
Q Consensus 79 ~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d-~d~~V~~~a~~~l~~i~~~~ 151 (862)
++.+ +.=.+.|.|.-|||.|+.|+.=+.-.+|+.+ +...++|.+ -||.|.+.|..+|-.-|...
T Consensus 556 ir~l---Lh~aVsD~nDDVrRaAVialGFVl~~dp~~~------~s~V~lLses~N~HVRyGaA~ALGIaCAGt 620 (929)
T KOG2062|consen 556 IRRL---LHVAVSDVNDDVRRAAVIALGFVLFRDPEQL------PSTVSLLSESYNPHVRYGAAMALGIACAGT 620 (929)
T ss_pred HHHh---hcccccccchHHHHHHHHHheeeEecChhhc------hHHHHHHhhhcChhhhhhHHHHHhhhhcCC
Confidence 4443 2334578999999999999998888899876 456677765 69999999888887776654
No 173
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=78.32 E-value=24 Score=33.55 Aligned_cols=94 Identities=15% Similarity=0.086 Sum_probs=61.9
Q ss_pred hccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---h----hhhH-HHHHHHHHh
Q 002971 17 CMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---V----DKIT-EYLCDPLQR 88 (862)
Q Consensus 17 l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~---~----~~~~-~~l~~~v~~ 88 (862)
+.+....+.---.-+-++-....+++-..-++..|+|-++++||.++-+||..|-.+. . .+++ ..+...+.+
T Consensus 12 ATs~~l~~~dw~~ileicD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~ 91 (142)
T cd03569 12 ATSELLGEPDLASILEICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKD 91 (142)
T ss_pred HcCcccCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHH
Confidence 3333334444444555666666666677889999999999999999999997665432 1 1222 344555666
Q ss_pred hhC-CCChHHHHHHHHHHHHHHh
Q 002971 89 CLK-DDDPYVRKTAAICVAKLYD 110 (862)
Q Consensus 89 ~l~-d~~~yVRk~A~~~l~kl~~ 110 (862)
++. ..++-||++++..+..-..
T Consensus 92 l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 92 LIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHcccCCHHHHHHHHHHHHHHHH
Confidence 665 4788888888877765544
No 174
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=78.15 E-value=2.8 Score=42.71 Aligned_cols=68 Identities=18% Similarity=0.189 Sum_probs=56.9
Q ss_pred HHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccc
Q 002971 51 FVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED 118 (862)
Q Consensus 51 l~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~ 118 (862)
+.+=+.|.|+..|-.|+-++......+-.+.+...+...+.|++.||||....++..+++.+|+.+..
T Consensus 125 ~~~W~~s~~~w~rR~~~v~~~~~~~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~ 192 (213)
T PF08713_consen 125 LEKWAKSDNEWVRRAAIVMLLRYIRKEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLE 192 (213)
T ss_dssp HHHHHHCSSHHHHHHHHHCTTTHGGGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 34445789999999999888887777777888888999999999999999999999999999988763
No 175
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=77.81 E-value=26 Score=34.24 Aligned_cols=105 Identities=22% Similarity=0.258 Sum_probs=69.5
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHHhcCCC---hhhhH-H---HHHHHHHhhhCC-CChHHHHHHHHHHHHHHhh---cccc
Q 002971 47 AVNTFVKDSQDPNPLIRALAVRTMGCIR---VDKIT-E---YLCDPLQRCLKD-DDPYVRKTAAICVAKLYDI---NAEL 115 (862)
Q Consensus 47 ~intl~kDl~~~n~~ir~lALr~l~~i~---~~~~~-~---~l~~~v~~~l~d-~~~yVRk~A~~~l~kl~~~---~p~~ 115 (862)
.+.-+.+=|+|+++.-|-.+++.+..+. .+|+. + ..+..+.+.|.. ..+.+++.|+.++.++|.. .|++
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l 105 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTL 105 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCch
Confidence 3445667778889999988888777654 24555 3 334445555554 6778899999999999964 6766
Q ss_pred ccc------cchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCC
Q 002971 116 VED------RGFLESLKDLISDNNPMVVANAVAALAEIEENSSR 153 (862)
Q Consensus 116 ~~~------~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~ 153 (862)
.++ ..++..+.+++++ ..+...++.+|..+.+..|.
T Consensus 106 ~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 106 TREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT 147 (165)
T ss_pred HHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence 543 1344444455554 56666777777777776554
No 176
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=77.73 E-value=18 Score=35.02 Aligned_cols=111 Identities=18% Similarity=0.247 Sum_probs=75.6
Q ss_pred HHHHHHHHhCcccHHHHHHHHHHhhccCC-chHH--HHHHHHHHhhcccccCCHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 002971 370 IVIKDIFRRYPNTYESIIATLCESLDTLD-EPEA--KASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTAT 446 (862)
Q Consensus 370 ~~l~~i~~~~p~~~~~~i~~L~~~l~~~~-~~~~--~~~~~wilGEy~~~i~~~~~~l~~~~~~~~~e~~~v~~~iLta~ 446 (862)
..+..+++.++..+..+++++.+.+-... .|.. .....|++-.+...+.+...-++.+.+.+..-+..+-..++.|+
T Consensus 40 ~IL~~~fk~h~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~~~a~~ll~Al 119 (158)
T PF14676_consen 40 QILLELFKVHEMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAPLTVLECSSKLKELLDYLSFLPGDVAIGLLRAL 119 (158)
T ss_dssp HHHHHHHHH-GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45677777888888888888887664222 2222 23455666666666666667778888888888999999999999
Q ss_pred HHHhhcCCCCChHHHHHHHHHhcccCCCChHHHHHHH
Q 002971 447 VKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAY 483 (862)
Q Consensus 447 ~Kl~~~~~~~~~~~~i~~~l~~~~~~s~~~dvrdRA~ 483 (862)
.=+....+. .++.+..+|.++.. +.+.+.|.-|.
T Consensus 120 ~PLi~~s~~--lrd~lilvLRKamf-~r~~~~R~~Av 153 (158)
T PF14676_consen 120 LPLIKFSPS--LRDSLILVLRKAMF-SRELDARQMAV 153 (158)
T ss_dssp HHHHTT-HH--HHHHHHHHHHHHTT--SSHHHHHHHH
T ss_pred HHHHhcCHH--HHHHHHHHHHHHHc-cccHHHHHHHH
Confidence 999877764 89999999999864 57778877664
No 177
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=77.69 E-value=29 Score=39.78 Aligned_cols=120 Identities=20% Similarity=0.225 Sum_probs=71.7
Q ss_pred CCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHh-----HHHHHhcCCChhhhHHHHHHHHHhhhCCCC
Q 002971 20 TENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRA-----LAVRTMGCIRVDKITEYLCDPLQRCLKDDD 94 (862)
Q Consensus 20 s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~-----lALr~l~~i~~~~~~~~l~~~v~~~l~d~~ 94 (862)
++.-..||-.-+.+..+.--.+|++-=.||-+..|. ++..|. +||-..+. ++..++..+ +.-.+.|.+
T Consensus 493 Tqhe~i~Rglgig~aLi~ygrqe~add~I~ell~d~---ds~lRy~G~fs~alAy~GT-gn~~vv~~l---Lh~avsD~n 565 (926)
T COG5116 493 TQHERIKRGLGIGFALILYGRQEMADDYINELLYDK---DSILRYNGVFSLALAYVGT-GNLGVVSTL---LHYAVSDGN 565 (926)
T ss_pred hhhhhHHhhhhhhhhHhhhhhHHHHHHHHHHHhcCc---hHHhhhccHHHHHHHHhcC-CcchhHhhh---heeecccCc
Confidence 344456666555555444445566666666665554 455553 33333322 333444443 233467889
Q ss_pred hHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcC-CChhHHHHHHHHHHHHhhcCC
Q 002971 95 PYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISD-NNPMVVANAVAALAEIEENSS 152 (862)
Q Consensus 95 ~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d-~d~~V~~~a~~~l~~i~~~~~ 152 (862)
.-|||.|+.|+.-+.-.+|+.+ ....++|.+ .|+.|......+|..-|...+
T Consensus 566 DDVrRAAViAlGfvc~~D~~~l------v~tvelLs~shN~hVR~g~AvaLGiacag~G 618 (926)
T COG5116 566 DDVRRAAVIALGFVCCDDRDLL------VGTVELLSESHNFHVRAGVAVALGIACAGTG 618 (926)
T ss_pred hHHHHHHHHheeeeEecCcchh------hHHHHHhhhccchhhhhhhHHHhhhhhcCCc
Confidence 9999999999998877777754 345566665 678887766666665555443
No 178
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=77.67 E-value=40 Score=40.54 Aligned_cols=193 Identities=18% Similarity=0.292 Sum_probs=102.3
Q ss_pred cHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhc----chh
Q 002971 289 PIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKV----NYV 364 (862)
Q Consensus 289 ~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~----~~v 364 (862)
....|..=+|+|....+...+..|.+.+.. .+.+..- +.+.+..++.....-...+++.+.+|++... .++
T Consensus 377 ~~~~r~~~lDal~~aGT~~av~~i~~~I~~--~~~~~~e---a~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l 451 (618)
T PF01347_consen 377 KEQARKIFLDALPQAGTNPAVKFIKDLIKS--KKLTDDE---AAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYL 451 (618)
T ss_dssp -HHHHHHHHHHHHHH-SHHHHHHHHHHHHT--T-S-HHH---HHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHc--CCCCHHH---HHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhH
Confidence 466788888888888887777777766654 2222222 3333433333321223567777777776432 356
Q ss_pred HHHHHHHHHHHHHhC--------------cccHHHHHHHHHHhhc---cCCchHHHHHHHHHHhhcccccCCHHHHHHHH
Q 002971 365 VQEAIIVIKDIFRRY--------------PNTYESIIATLCESLD---TLDEPEAKASMIWIIGEYAERIDNADELLESF 427 (862)
Q Consensus 365 ~~e~i~~l~~i~~~~--------------p~~~~~~i~~L~~~l~---~~~~~~~~~~~~wilGEy~~~i~~~~~~l~~~ 427 (862)
...++..+..+++++ ....+..+..+.+.+. +-.+.+-+..++-.||.-|.. .....+..+
T Consensus 452 ~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~--~~i~~l~~~ 529 (618)
T PF01347_consen 452 RETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP--ESIPVLLPY 529 (618)
T ss_dssp HHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G--GGHHHHHTT
T ss_pred HHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc--hhhHHHHhH
Confidence 666676666665542 1112223333333333 111223345566678877642 233444444
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcccCCCChHHHHHHHHHHHHhcCCHH
Q 002971 428 LESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 494 (862)
Q Consensus 428 ~~~~~~e~~~v~~~iLta~~Kl~~~~~~~~~~~~i~~~l~~~~~~s~~~dvrdRA~~y~~ll~~~~~ 494 (862)
+..-...+..+|.+.+.|+-|+....|.. .++.+..++.- ...++|||=-| |..|+..+|.
T Consensus 530 i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~-v~~~l~~I~~n---~~e~~EvRiaA--~~~lm~~~P~ 590 (618)
T PF01347_consen 530 IEGKEEVPHFIRVAAIQALRRLAKHCPEK-VREILLPIFMN---TTEDPEVRIAA--YLILMRCNPS 590 (618)
T ss_dssp STTSS-S-HHHHHHHHHTTTTGGGT-HHH-HHHHHHHHHH----TTS-HHHHHHH--HHHHHHT---
T ss_pred hhhccccchHHHHHHHHHHHHHhhcCcHH-HHHHHHHHhcC---CCCChhHHHHH--HHHHHhcCCC
Confidence 44333557899999999999997777754 56666666653 45678888777 5667776553
No 179
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=77.62 E-value=10 Score=35.95 Aligned_cols=95 Identities=18% Similarity=0.198 Sum_probs=65.9
Q ss_pred HhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---hhhhH-----HHHHHHHH
Q 002971 16 NCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---VDKIT-----EYLCDPLQ 87 (862)
Q Consensus 16 ~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~---~~~~~-----~~l~~~v~ 87 (862)
+..+....+.---..+-++-....+++-+--++..|+|-|+++||.++-+||..+-.+. .+.+- +.+...+.
T Consensus 12 kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~ 91 (140)
T PF00790_consen 12 KATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELV 91 (140)
T ss_dssp HHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHH
T ss_pred HHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHH
Confidence 45555555555666677888888888889999999999999999999999998876542 22322 24567777
Q ss_pred hhhCC--CChH--HHHHHHHHHHHHHh
Q 002971 88 RCLKD--DDPY--VRKTAAICVAKLYD 110 (862)
Q Consensus 88 ~~l~d--~~~y--VRk~A~~~l~kl~~ 110 (862)
+++.+ ..+. ||+++...+.....
T Consensus 92 ~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 92 KLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 77765 2333 89888866654443
No 180
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=77.13 E-value=11 Score=35.30 Aligned_cols=68 Identities=16% Similarity=0.123 Sum_probs=52.4
Q ss_pred eEEEEEEEeeCCeeEEEEEEEecCCCCcccceeeecccccCcccCCCCCCCcCCCCCeeeEEEeeeecC
Q 002971 647 LQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQ 715 (862)
Q Consensus 647 L~I~~~~~~~~~~~~l~l~~~N~s~~~it~f~~q~~~n~~gl~~~~~~~~~~l~pg~~~~~~i~i~~~~ 715 (862)
+-+.+-...+..-+.+.+.+.|.|...+.|+++++-. .-.|++...++.-.|.|++....+..|++..
T Consensus 58 vYaEA~v~v~q~DIvLDvllvNqT~~tLqNl~vElat-~gdLklve~p~~~tL~P~~~~~i~~~iKVsS 125 (140)
T PF07718_consen 58 VYAEAYVTVHQYDIVLDVLLVNQTNETLQNLTVELAT-LGDLKLVERPQPITLAPHGFARIKATIKVSS 125 (140)
T ss_pred eEEEEEEEEEeeeEEEEEEEEeCChhhhhcEEEEEEe-cCCcEEccCCCceeeCCCcEEEEEEEEEEEe
Confidence 3355555555567899999999999999999999975 3367777767666899999888877776554
No 181
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.06 E-value=1.8e+02 Score=35.47 Aligned_cols=73 Identities=18% Similarity=0.197 Sum_probs=54.0
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHHHhh--ccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCC
Q 002971 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDI--NAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR 153 (862)
Q Consensus 81 ~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~--~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~ 153 (862)
.........+.|+-+-+|--|+.-+.+++++ ....+...+.+....+.|.|.|+-|-.||+..+.-+|...++
T Consensus 727 e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e 801 (982)
T KOG4653|consen 727 EPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE 801 (982)
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch
Confidence 3345556667788889999999999999983 333443446778889999999999988888865555554443
No 182
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=77.04 E-value=2.9 Score=48.91 Aligned_cols=99 Identities=16% Similarity=0.289 Sum_probs=48.6
Q ss_pred hHHHhHhccCCCcchHHHHHHHHHHhcCCCCc--HHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCCh---hh-hHHHHHH
Q 002971 11 FTDVVNCMQTENLELKKLVYLYLINYAKSQPD--LAILAVNTFVKDSQDPNPLIRALAVRTMGCIRV---DK-ITEYLCD 84 (862)
Q Consensus 11 f~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~e--l~~L~intl~kDl~~~n~~ir~lALr~l~~i~~---~~-~~~~l~~ 84 (862)
.+.+++++++.|-..|-+.--|+..|.++=++ +---+...+..-+.|+|+.+|..+|++|..+.. +. +-..+..
T Consensus 332 ~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr 411 (690)
T KOG1243|consen 332 IPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLR 411 (690)
T ss_pred hhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHH
Confidence 34455555555555555555555555543221 222234444555555556666666655554431 11 2233444
Q ss_pred HHHhhhCCCChHHHHHHHHHHHHHH
Q 002971 85 PLQRCLKDDDPYVRKTAAICVAKLY 109 (862)
Q Consensus 85 ~v~~~l~d~~~yVRk~A~~~l~kl~ 109 (862)
.+.+.-.|.++-+|-+...|+.|+-
T Consensus 412 ~~ar~q~d~~~~irtntticlgki~ 436 (690)
T KOG1243|consen 412 YLARLQPDEHGGIRTNTTICLGKIA 436 (690)
T ss_pred HHHhhCccccCcccccceeeecccc
Confidence 4444444555555555555555554
No 183
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=76.66 E-value=11 Score=42.93 Aligned_cols=128 Identities=20% Similarity=0.151 Sum_probs=77.5
Q ss_pred hHHHh-HhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHh-hcCCCCHHHHhHHHHHhcCCC--hhhhHHHHHHHH
Q 002971 11 FTDVV-NCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVK-DSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPL 86 (862)
Q Consensus 11 f~~vv-~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~k-Dl~~~n~~ir~lALr~l~~i~--~~~~~~~l~~~v 86 (862)
+-+.+ +++.+.|..+|--|-+.+..-.--...+ -++.++.. ..+|.|..+|-.|..+|+-++ .++... ..
T Consensus 517 add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~--~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~lv----~t 590 (926)
T COG5116 517 ADDYINELLYDKDSILRYNGVFSLALAYVGTGNL--GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDLLV----GT 590 (926)
T ss_pred HHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcc--hhHhhhheeecccCchHHHHHHHHheeeeEecCcchhh----HH
Confidence 33444 4677777777766655544322222121 13334333 357788888888888888765 343332 23
Q ss_pred HhhhC-CCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 002971 87 QRCLK-DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIE 148 (862)
Q Consensus 87 ~~~l~-d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~ 148 (862)
.++|. +.+++||--.+.++.-...-..+.+ ..+.|..|..|.+.-|..+|..++.-|.
T Consensus 591 velLs~shN~hVR~g~AvaLGiacag~G~~~----a~diL~~L~~D~~dfVRQ~AmIa~~mIl 649 (926)
T COG5116 591 VELLSESHNFHVRAGVAVALGIACAGTGDKV----ATDILEALMYDTNDFVRQSAMIAVGMIL 649 (926)
T ss_pred HHHhhhccchhhhhhhHHHhhhhhcCCccHH----HHHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence 33443 4788888888887775544333322 4577788888888888877777765553
No 184
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.62 E-value=2e+02 Score=35.65 Aligned_cols=116 Identities=20% Similarity=0.267 Sum_probs=79.2
Q ss_pred CCCHHHHhHHHHHhcCCCh---------hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhh---ccccccccchHHH
Q 002971 57 DPNPLIRALAVRTMGCIRV---------DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI---NAELVEDRGFLES 124 (862)
Q Consensus 57 ~~n~~ir~lALr~l~~i~~---------~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~---~p~~~~~~~~~~~ 124 (862)
..|+.-.--|||.+|++.. .+|--.+...|.-.++++.-|.|.+|+..+.++... +|.... ...+.
T Consensus 429 ~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~--~ale~ 506 (1010)
T KOG1991|consen 429 NKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLS--EALEL 506 (1010)
T ss_pred ccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHH--HHHHH
Confidence 3466666789999998752 233345678888889999999999999999998743 444443 24555
Q ss_pred HHHhhc-CCChhHHHHHHHHHHHHhhcCCCC---cccccHHHHHHHHHHhccCC
Q 002971 125 LKDLIS-DNNPMVVANAVAALAEIEENSSRP---IFEITSHTLSKLLTALNECT 174 (862)
Q Consensus 125 l~~lL~-d~d~~V~~~a~~~l~~i~~~~~~~---~~~l~~~~~~~Ll~~l~~~~ 174 (862)
..++|. |++.-|..-|.-||.-...+.... .-..++++..+|++..++..
T Consensus 507 t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~E 560 (1010)
T KOG1991|consen 507 THNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVE 560 (1010)
T ss_pred HHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcc
Confidence 566665 888888887777776655443221 23455667777777766653
No 185
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=76.02 E-value=29 Score=32.44 Aligned_cols=91 Identities=19% Similarity=0.144 Sum_probs=59.7
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---h----hhhHH-HHHHHHHhhhCC---
Q 002971 24 ELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---V----DKITE-YLCDPLQRCLKD--- 92 (862)
Q Consensus 24 ~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~---~----~~~~~-~l~~~v~~~l~d--- 92 (862)
+.-.-+-+.++-.....++-+..++..|+|=++++||.++-+||..+-.+. . .+++. .....+.+++..
T Consensus 15 ~~D~~~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~ 94 (133)
T cd03561 15 EPDWALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPK 94 (133)
T ss_pred CccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCC
Confidence 333444555666666667777888888888899999988888888775442 1 22232 333456666654
Q ss_pred CChHHHHHHHHHHHHHHhhccc
Q 002971 93 DDPYVRKTAAICVAKLYDINAE 114 (862)
Q Consensus 93 ~~~yVRk~A~~~l~kl~~~~p~ 114 (862)
.++-||++++..+.......+.
T Consensus 95 ~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 95 YDPKVREKALELILAWSESFGG 116 (133)
T ss_pred CCHHHHHHHHHHHHHHHHHhcC
Confidence 5778888888777766554443
No 186
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=75.85 E-value=33 Score=32.17 Aligned_cols=51 Identities=24% Similarity=0.408 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHhhc-cccccccchHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 002971 95 PYVRKTAAICVAKLYDIN-AELVEDRGFLESLKDLISDNNPMVVANAVAALAEIE 148 (862)
Q Consensus 95 ~yVRk~A~~~l~kl~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~ 148 (862)
++||++.+.++..++..+ |+.-++ +++.+.+++.. ++.-....+..|..+.
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~Wp~--~l~~l~~~~~~-~~~~~~~~L~iL~~l~ 53 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQWPD--FLEDLLQLLQS-SPQHLELVLRILRILP 53 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSTT--HHHHHHHHHHT-THHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHChhhCch--HHHHHHHHhcc-chhHHHHHHHHHHHHH
Confidence 689999999999999864 887764 88888888876 3444444444444443
No 187
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=75.37 E-value=16 Score=35.57 Aligned_cols=135 Identities=16% Similarity=0.236 Sum_probs=72.0
Q ss_pred CCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC--hhhhHHHHHHHHHhhhCCC-----ChHHHHHHHHHHHHHHhh
Q 002971 39 SQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQRCLKDD-----DPYVRKTAAICVAKLYDI 111 (862)
Q Consensus 39 ~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~--~~~~~~~l~~~v~~~l~d~-----~~yVRk~A~~~l~kl~~~ 111 (862)
..|++.-+..+-++.+ + ++.+|--|+|+||.|| +|--.. .+.+...+. +....-... .....
T Consensus 7 ~yP~LL~~L~~iLk~e-~--s~~iR~E~lr~lGilGALDP~~~k----~~~~~~~~~~~~~~~~~~~~~~l----~~~~~ 75 (160)
T PF11865_consen 7 DYPELLDILLNILKTE-Q--SQSIRREALRVLGILGALDPYKHK----SIQKSLDSKSSENSNDESTDISL----PMMGI 75 (160)
T ss_pred HhHHHHHHHHHHHHhC-C--CHHHHHHHHHHhhhccccCcHHHh----cccccCCccccccccccchhhHH----hhccC
Confidence 4588888999999998 4 4899999999999998 332222 122222211 111111111 11111
Q ss_pred cc---ccccccchHHHHHHhhcCCChhH-HHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHH
Q 002971 112 NA---ELVEDRGFLESLKDLISDNNPMV-VANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDAL 185 (862)
Q Consensus 112 ~p---~~~~~~~~~~~l~~lL~d~d~~V-~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L 185 (862)
.| |... .-.+..|...|+|....- -.+++.++..|.+..+..+....++.++.+++.+..|.+-.+-.+++-|
T Consensus 76 ~~~~ee~y~-~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL 152 (160)
T PF11865_consen 76 SPSSEEYYP-TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQL 152 (160)
T ss_pred CCchHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHH
Confidence 11 1111 112345555666643222 2244555566655544556777777788888877777664444444433
No 188
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=75.22 E-value=60 Score=35.78 Aligned_cols=68 Identities=16% Similarity=0.207 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhhc-CCCCHHHHhHHHHHhcCCC---hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHh
Q 002971 43 LAILAVNTFVKDS-QDPNPLIRALAVRTMGCIR---VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYD 110 (862)
Q Consensus 43 l~~L~intl~kDl-~~~n~~ir~lALr~l~~i~---~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~ 110 (862)
++--+++.|..=+ +..||...+.++.+++.=. ..++-+.++..+++++.|+.+-|||.-+.+++.++.
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 4444444443333 2367888888887777522 467788999999999999999999999999999987
No 189
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=75.08 E-value=63 Score=35.16 Aligned_cols=134 Identities=16% Similarity=0.203 Sum_probs=68.8
Q ss_pred CCChhHHHHHHHHHHHHhhcCCCCcccccH--------HHHHHHHHHhccCChhHHHHHHHHHhhcccccH----HHHHH
Q 002971 131 DNNPMVVANAVAALAEIEENSSRPIFEITS--------HTLSKLLTALNECTEWGQVFILDALSRYKAADA----REAEN 198 (862)
Q Consensus 131 d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~--------~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~----~~~~~ 198 (862)
.++..++...+..+.++...++.. .++.. ..+..+++.+...+++.+...+.+|+.+....+ ....+
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~-~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~ 146 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSR-VELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKE 146 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSS-HHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHH-HHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHH
Confidence 457778888888888887776532 11111 146677777777788888887777776543321 11124
Q ss_pred HHHHHHHhhc----CCChHHHHHHHHHHHHhhhccCChHHHHHHH-Hhcccchhhcc------cC--ChhHHHHHHHHHH
Q 002971 199 IVERVTPRLQ----HANCAVVLSAVKMILQQMELITSTDVVRNLC-KKMAPPLVTLL------SA--EPEIQYVALRNIN 265 (862)
Q Consensus 199 il~~v~~~l~----~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~-~~~~~~L~~ll------s~--~~~iry~aL~~l~ 265 (862)
+++.+...++ +.+..+..-|++++..++ ..++....+. .+.++.|..++ ++ ...++|-++-++.
T Consensus 147 ~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL---~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lW 223 (312)
T PF03224_consen 147 ALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL---RSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLW 223 (312)
T ss_dssp HHHHHHHHHH-TT-HHHH---HHHHHHHHHHH---TSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh---CcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHH
Confidence 4455444443 334445567777776654 2333322211 22334444555 22 3457787777777
Q ss_pred HHH
Q 002971 266 LIV 268 (862)
Q Consensus 266 ~i~ 268 (862)
.+.
T Consensus 224 lLS 226 (312)
T PF03224_consen 224 LLS 226 (312)
T ss_dssp HHT
T ss_pred HHh
Confidence 664
No 190
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.24 E-value=2.1e+02 Score=34.68 Aligned_cols=130 Identities=19% Similarity=0.288 Sum_probs=83.3
Q ss_pred hcccchhhccc---CChhHHHHHHHHHHHHHhhC--hhhhhccceEEEecCCCcHHHHHHHHHHHHHhcCcCcHHHHHHH
Q 002971 241 KMAPPLVTLLS---AEPEIQYVALRNINLIVQRR--PTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLE 315 (862)
Q Consensus 241 ~~~~~L~~lls---~~~~iry~aL~~l~~i~~~~--p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~e 315 (862)
.-.++|+.-|. .++++--++|+++..+..+. |.+.... ...|+.. ..--|.+. -+++|+.-++.
T Consensus 61 ~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds------~qsdd~g--~~iae~fi--k~qd~I~lll~- 129 (970)
T KOG0946|consen 61 QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDS------TQSDDLG--LWIAEQFI--KNQDNITLLLQ- 129 (970)
T ss_pred cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccc------hhhhHHH--HHHHHHHH--cCchhHHHHHH-
Confidence 34456666562 47888888999999888764 2221110 0011111 11122222 35667665544
Q ss_pred HHHhhhhccHHHHHHHHHHHHHHHHhhhHhHHHH-------HHHHHHHHhhhcchhHHHHHHHHHHHHHhCcccHH
Q 002971 316 FKEYATEVDVDFVRKAVRAIGRCAIKLERAAERC-------ISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYE 384 (862)
Q Consensus 316 L~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~-------v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~ 384 (862)
|+..-|..+|+.+|+-|..+-..-++....+ |..|+++|.+.-+-|+.|++-.+..+++.++..|+
T Consensus 130 ---~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQK 202 (970)
T KOG0946|consen 130 ---SLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQK 202 (970)
T ss_pred ---HHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHH
Confidence 5556688888888888876544444433333 77899999999999999999999999999987654
No 191
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=74.04 E-value=53 Score=38.38 Aligned_cols=167 Identities=22% Similarity=0.256 Sum_probs=91.7
Q ss_pred cCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhc-----------cCChhHHHHHHHHHhhcccccHHHHHH
Q 002971 130 SDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALN-----------ECTEWGQVFILDALSRYKAADAREAEN 198 (862)
Q Consensus 130 ~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~-----------~~~~w~q~~iL~~L~~~~~~~~~~~~~ 198 (862)
.|.+..|...|-..|-.+... |+ ....+.+|+.... -.++-.|.+||.+|.+=... ......
T Consensus 247 ad~~~~V~~~ae~~LKr~~~~-----~e-d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A-a~~~~~ 319 (501)
T PF13001_consen 247 ADSNSSVSDRAEDLLKRLSVS-----LE-DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA-ATSFPN 319 (501)
T ss_pred eCCcchHHHHHHHHHhhcCCC-----CC-CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH-HhCCcc
Confidence 577777766665555443221 21 2345566666554 24678999999999763211 111234
Q ss_pred HHHHHHHhhcCC--ChHHHHHHHHHH---HHhhhccCChHHHHHHHHhcccchhhcc---------cCChhHHHHHHHHH
Q 002971 199 IVERVTPRLQHA--NCAVVLSAVKMI---LQQMELITSTDVVRNLCKKMAPPLVTLL---------SAEPEIQYVALRNI 264 (862)
Q Consensus 199 il~~v~~~l~~~--n~aV~~eai~~i---~~~~~~~~~~~~~~~~~~~~~~~L~~ll---------s~~~~iry~aL~~l 264 (862)
++..+...+.+. +.-+.-.++..+ ......+ .+..++.+...+..-+..++ +.+.+.|-.+.++|
T Consensus 320 ~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~-~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~l 398 (501)
T PF13001_consen 320 ILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHI-SPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETL 398 (501)
T ss_pred HHHHHhccccCCccccccchhcchhhhcchHHhhhc-CHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHH
Confidence 555666666665 333322333333 2221111 34444443333333333333 23567999999999
Q ss_pred HHHHhhChhhhhccce----EEEecCCCcHHHHHHHHHHHHHhc
Q 002971 265 NLIVQRRPTILAHEIK----VFFCKYNDPIYVKMEKLEIMIKLA 304 (862)
Q Consensus 265 ~~i~~~~p~~~~~~~~----~~~~l~~d~~~Ik~~~L~lL~~l~ 304 (862)
..|+++.|.+|...+. .|..+.+++..+|.-.-+.|..|+
T Consensus 399 G~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~ 442 (501)
T PF13001_consen 399 GLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLA 442 (501)
T ss_pred HHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHH
Confidence 9999999998865432 233455666667666666665554
No 192
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=73.78 E-value=35 Score=35.61 Aligned_cols=126 Identities=18% Similarity=0.215 Sum_probs=69.7
Q ss_pred hhCCCChHHHHHHHHHHHHHHhhccccc------cc-----cchHHHHHHhhcCCChhHHHHHHHHHHHHhhcC-CCCcc
Q 002971 89 CLKDDDPYVRKTAAICVAKLYDINAELV------ED-----RGFLESLKDLISDNNPMVVANAVAALAEIEENS-SRPIF 156 (862)
Q Consensus 89 ~l~d~~~yVRk~A~~~l~kl~~~~p~~~------~~-----~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~-~~~~~ 156 (862)
++.|.++.|.|.|+.|...+|+.-=+.+ ++ ..+.+.+..++.+.+++|..+|+..+..+.... ++..-
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~ 80 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSD 80 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TT
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCC
Confidence 4789999999999999999998632222 10 124456667788899999999999988764321 11000
Q ss_pred cccH---HHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCC--hHHHHHHHHHHHHh
Q 002971 157 EITS---HTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHAN--CAVVLSAVKMILQQ 225 (862)
Q Consensus 157 ~l~~---~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n--~aV~~eai~~i~~~ 225 (862)
.-.. +.-.. +..+..-.|.+...-| ..|+..+++.+...++... +.++..+++++..+
T Consensus 81 ~~~~~~~~~d~S-L~~vp~~Hp~l~~~~L----------e~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~I 143 (239)
T PF11935_consen 81 SPPRRGSPNDFS-LSSVPPNHPLLNPQQL----------EAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNI 143 (239)
T ss_dssp S---GGGTTS---GGGS-TT-SSS-HHHH----------HHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHH
T ss_pred CccccccccCCC-HHHcCCCCCcCCHHHH----------HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 0000 00000 0111111222222111 3577788888888887655 55666666665544
No 193
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=73.32 E-value=1e+02 Score=33.53 Aligned_cols=98 Identities=20% Similarity=0.282 Sum_probs=62.2
Q ss_pred hHHHhHhccCCCcchHHHHHHHHHHhcCCC--CcH----HHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC--------hh
Q 002971 11 FTDVVNCMQTENLELKKLVYLYLINYAKSQ--PDL----AILAVNTFVKDSQDPNPLIRALAVRTMGCIR--------VD 76 (862)
Q Consensus 11 f~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~--~el----~~L~intl~kDl~~~n~~ir~lALr~l~~i~--------~~ 76 (862)
+-+++..+..++-..|--++-.+...+..+ +|. ..-++..+.|.++.....-+.+|++.++-+. ..
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 446666666666665555555555554332 221 2234666778887776677788877766432 46
Q ss_pred hhHHHHHHHHHhhhCCCC--hHHHHHHHHHHHHH
Q 002971 77 KITEYLCDPLQRCLKDDD--PYVRKTAAICVAKL 108 (862)
Q Consensus 77 ~~~~~l~~~v~~~l~d~~--~yVRk~A~~~l~kl 108 (862)
++.+.+.+.+++.+.|.+ +-+|-.++.|+.-+
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~ 158 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAIC 158 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHH
Confidence 888899999999999854 44555555555544
No 194
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.46 E-value=84 Score=38.20 Aligned_cols=63 Identities=21% Similarity=0.187 Sum_probs=52.7
Q ss_pred hcCCCCHHHHhHHHHHhcCCCh------hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccc
Q 002971 54 DSQDPNPLIRALAVRTMGCIRV------DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELV 116 (862)
Q Consensus 54 Dl~~~n~~ir~lALr~l~~i~~------~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~ 116 (862)
-+.|+-+.+||-||+.|..+.. ..+-+-+.......++|.++||==.|+-++..+...+|+.+
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~i 803 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDI 803 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhh
Confidence 4567888999999999997643 34456778888999999999999999999999999998754
No 195
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=72.30 E-value=3.4e+02 Score=36.19 Aligned_cols=125 Identities=15% Similarity=0.153 Sum_probs=69.0
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhcc-c-CChhHHHHHHHHHHHHHhhChhhhh
Q 002971 199 IVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-S-AEPEIQYVALRNINLIVQRRPTILA 276 (862)
Q Consensus 199 il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~ll-s-~~~~iry~aL~~l~~i~~~~p~~~~ 276 (862)
++.....++++.++.|.-=+......+... -....++ .++..|++.+ + .+.++- .||+.|..|+..+|+.+.
T Consensus 436 iL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~--fds~~qq---eVv~~Lvthi~sg~~~ev~-~aL~vL~~L~~~~~~~l~ 509 (1426)
T PF14631_consen 436 ILSLAQSLLRSKEPSVREFGSHLYKYLFKE--FDSYCQQ---EVVGALVTHIGSGNSQEVD-AALDVLCELAEKNPSELQ 509 (1426)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHHHS--S-HHHHH---HHHHHHHHHHHH--HHHHH-HHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhh--ccchhHH---HHHHHHHHHHcCCcHHHHH-HHHHHHHHHHhccHHHHH
Confidence 445555677777776543333333333222 2222222 3555667666 4 455775 789999999999998776
Q ss_pred cc---ce-EEEecCCC-cHHHHHHHHHHHHHhcC--cCcHHHHHHHH----HHhhhhccHHHHHH
Q 002971 277 HE---IK-VFFCKYND-PIYVKMEKLEIMIKLAS--DRNIDQVLLEF----KEYATEVDVDFVRK 330 (862)
Q Consensus 277 ~~---~~-~~~~l~~d-~~~Ik~~~L~lL~~l~~--~~Nv~~Iv~eL----~~y~~~~d~~~~~~ 330 (862)
++ ++ ++.++.+= ...||+. .++|..|+- .++...|-+|| .+++...+..+++.
T Consensus 510 ~fa~~l~giLD~l~~Ls~~qiR~l-f~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~ 573 (1426)
T PF14631_consen 510 PFATFLKGILDYLDNLSLQQIRKL-FDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRI 573 (1426)
T ss_dssp HTHHHHHGGGGGGGG--HHHHHHH-HHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHH
Confidence 54 33 44444332 2456554 888888873 22234555554 36677777777664
No 196
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=72.01 E-value=46 Score=31.14 Aligned_cols=94 Identities=20% Similarity=0.182 Sum_probs=66.0
Q ss_pred ccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---h----hhhH-HHHHHHHHhh
Q 002971 18 MQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---V----DKIT-EYLCDPLQRC 89 (862)
Q Consensus 18 ~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~---~----~~~~-~~l~~~v~~~ 89 (862)
.+....+.-.-.-+.++-....+++-+.-++..|+|=++++||.+.-+||..|-.+. . .+++ ..+...+.++
T Consensus 9 Ts~~l~~~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l 88 (133)
T smart00288 9 TSPSLLEEDWELILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKL 88 (133)
T ss_pred cCcCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHH
Confidence 333444444555577777777778888999999999999999999999998886542 1 2232 3456677777
Q ss_pred hCC--CChHHHHHHHHHHHHHHhh
Q 002971 90 LKD--DDPYVRKTAAICVAKLYDI 111 (862)
Q Consensus 90 l~d--~~~yVRk~A~~~l~kl~~~ 111 (862)
+.+ ..+.||++++..+..-...
T Consensus 89 ~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 89 IKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred HcCCCCcHHHHHHHHHHHHHHHHH
Confidence 776 3344899888777665543
No 197
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=71.28 E-value=4.7 Score=40.52 Aligned_cols=68 Identities=21% Similarity=0.278 Sum_probs=54.8
Q ss_pred cCCCCHHHHhHHHHHhcCCChh-hhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHH
Q 002971 55 SQDPNPLIRALAVRTMGCIRVD-KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLES 124 (862)
Q Consensus 55 l~~~n~~ir~lALr~l~~i~~~-~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~ 124 (862)
..|.|+..|-.|.-++...... .-.+.+...+..++.|.+.||||...-++..+++.+|+.+.+ |+..
T Consensus 114 ~~s~~~~~rR~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~--~l~~ 182 (197)
T cd06561 114 AKSENEWVRRAAIVLLLRLIKKETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIA--FLEK 182 (197)
T ss_pred HhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHH--HHHH
Confidence 3678998888888777664443 566777888899999999999999999999999999987753 5444
No 198
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=71.13 E-value=15 Score=42.96 Aligned_cols=126 Identities=18% Similarity=0.168 Sum_probs=87.4
Q ss_pred CCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCC--CHHHHhHHHHHh---cCCC---hhh----hHHHHHHHHH
Q 002971 20 TENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDP--NPLIRALAVRTM---GCIR---VDK----ITEYLCDPLQ 87 (862)
Q Consensus 20 s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~--n~~ir~lALr~l---~~i~---~~~----~~~~l~~~v~ 87 (862)
+..+..|-|.||.=+..+-...+-.+ ..+...+.++ |.-.|.+|+.++ ..+. .+. +.+.+.....
T Consensus 296 ~~~lq~kIL~~L~kS~~Aa~~~~~~~---~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~ 372 (501)
T PF13001_consen 296 SPRLQEKILSLLSKSVIAATSFPNIL---QIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGW 372 (501)
T ss_pred CHHHHHHHHHHHHHhHHHHhCCccHH---HHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCc
Confidence 44566777777777766665543222 2234577777 788999999999 4332 333 3345555555
Q ss_pred hhhC--------CCChHHHHHHHHHHHHHHhhccccc-cccchHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 002971 88 RCLK--------DDDPYVRKTAAICVAKLYDINAELV-EDRGFLESLKDLISDNNPMVVANAVAALAEIE 148 (862)
Q Consensus 88 ~~l~--------d~~~yVRk~A~~~l~kl~~~~p~~~-~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~ 148 (862)
+.+. ..+.-.|..|..|++.+.+..|.++ .+-+++..+-+.|.+.++.|..+.--+|..+.
T Consensus 373 p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~ 442 (501)
T PF13001_consen 373 PLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLA 442 (501)
T ss_pred cccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHH
Confidence 5562 2577899999999999999999998 44456777777778888888877766666654
No 199
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=70.07 E-value=6.6 Score=28.18 Aligned_cols=30 Identities=27% Similarity=0.371 Sum_probs=20.3
Q ss_pred cchHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 002971 119 RGFLESLKDLISDNNPMVVANAVAALAEIE 148 (862)
Q Consensus 119 ~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~ 148 (862)
.+.++.|.++|.+.|+.|+.+|+.+|..|+
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 456677777777777777777777766653
No 200
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=69.38 E-value=86 Score=31.12 Aligned_cols=77 Identities=10% Similarity=0.012 Sum_probs=50.7
Q ss_pred HHHHHHHhcCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhcchhHHHHHHHH
Q 002971 296 KLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVI 372 (862)
Q Consensus 296 ~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l 372 (862)
++.-+..=.++.|++.++++|.+...+.+.+....+++.|-..|..-+.....|...+-.+-...+..+...++..+
T Consensus 3 ~v~~~lnklt~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~l~~~~~~~f~~~ll~~~ 79 (209)
T PF02854_consen 3 KVRGILNKLTPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEPNFSPLYARLCAALNSRFPSEFRSLLLNRC 79 (209)
T ss_dssp HHHHHHHHCSSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred hHHHHHHHCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCchHHHHHHHHHHHHhccchhhHHHHHHHHH
Confidence 44444444459999999999998777668889999999998888777666666655544433333213344444433
No 201
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=69.33 E-value=22 Score=38.70 Aligned_cols=143 Identities=17% Similarity=0.206 Sum_probs=72.6
Q ss_pred CCCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHH-----------HHHHHHhhcCCCCHHHHhHHHHHhcC
Q 002971 4 GKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAIL-----------AVNTFVKDSQDPNPLIRALAVRTMGC 72 (862)
Q Consensus 4 G~dvs~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L-----------~intl~kDl~~~n~~ir~lALr~l~~ 72 (862)
|.....+|..+++-+ +++....+.+-..+..+...+|+..-+ ....|.+-+.+++.+++-.|.+.++.
T Consensus 53 ~~~~~~~~l~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~ 131 (312)
T PF03224_consen 53 GDQYASLFLNLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTS 131 (312)
T ss_dssp ---------HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 445566777777766 344444443333344444444432111 34567778888899999999999887
Q ss_pred CCh-------h---hhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhc--cccccccchHHHHHHhh-----cC--CC
Q 002971 73 IRV-------D---KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN--AELVEDRGFLESLKDLI-----SD--NN 133 (862)
Q Consensus 73 i~~-------~---~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~--p~~~~~~~~~~~l~~lL-----~d--~d 133 (862)
+.. . +.++.+...+...+.+.+.-+...|+.|+..+.+.. ...+-+.+.++.+..+| .+ .+
T Consensus 132 Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~ 211 (312)
T PF03224_consen 132 LLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSG 211 (312)
T ss_dssp HHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------H
T ss_pred HHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCc
Confidence 631 2 455555566666555566667788888888887642 22333345677777777 22 34
Q ss_pred hhHHHHHHHHHHHH
Q 002971 134 PMVVANAVAALAEI 147 (862)
Q Consensus 134 ~~V~~~a~~~l~~i 147 (862)
..+.+.++.++..+
T Consensus 212 ~Ql~Y~~ll~lWlL 225 (312)
T PF03224_consen 212 IQLQYQALLCLWLL 225 (312)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 55566666666554
No 202
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=69.21 E-value=2.4e+02 Score=34.07 Aligned_cols=68 Identities=24% Similarity=0.239 Sum_probs=52.2
Q ss_pred HHHHHhhhCCCChHHHHHHHHHHHHHHhhcccc---ccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhc
Q 002971 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (862)
Q Consensus 83 ~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 150 (862)
.+.+...|.+.+|.|.-.|+.-+.++..-+-+. +..-+=++.|..+|...+..|..+|+.+|-.+.-.
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~ 305 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFG 305 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcc
Confidence 455677788999999998888888776554433 22223478889999999999999999999887654
No 203
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.07 E-value=24 Score=37.61 Aligned_cols=141 Identities=16% Similarity=0.130 Sum_probs=85.3
Q ss_pred HHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHH---HhhcCCChhHHHHHHHHHHHHhhcCCCCcccc
Q 002971 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK---DLISDNNPMVVANAVAALAEIEENSSRPIFEI 158 (862)
Q Consensus 82 l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~---~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l 158 (862)
......+.|.+.++.+.=-++-.+-++...+||.+.+ .+...+. +-++....+|-.+|+..+.+|.......+.+.
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~-~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ 167 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNP-MLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQE 167 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667788889988888888888899999987754 3444443 44556778999999999988866432222222
Q ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 002971 159 TSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQ 225 (862)
Q Consensus 159 ~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~ 225 (862)
....+..|+..-.+.+-|..--..+.|...... -....++..+.+.++|.|+-+...+..++.++
T Consensus 168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~--vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVNH--VTPQKLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhc--cChHHHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 222233333322233444433333333322111 11235677888889999988877776666543
No 204
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=68.76 E-value=9.5 Score=42.55 Aligned_cols=63 Identities=17% Similarity=0.213 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhhcC---CCCHHHHhHHHHHhcCCC---hhhhHHHHHHHHHhhhCCCChHHHHHHHHHH
Q 002971 43 LAILAVNTFVKDSQ---DPNPLIRALAVRTMGCIR---VDKITEYLCDPLQRCLKDDDPYVRKTAAICV 105 (862)
Q Consensus 43 l~~L~intl~kDl~---~~n~~ir~lALr~l~~i~---~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l 105 (862)
+.-...+.+.-||+ +..|..|+-|++++...| .++....+++.+.++|.+++.-|+--||.|+
T Consensus 302 v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 302 VVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 34444555556666 678999999999998776 5778888999999999999999999999886
No 205
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=68.67 E-value=6 Score=28.87 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=20.6
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHH
Q 002971 80 EYLCDPLQRCLKDDDPYVRKTAAIC 104 (862)
Q Consensus 80 ~~l~~~v~~~l~d~~~yVRk~A~~~ 104 (862)
+.+...|.+.+.|++|-||+.|+-.
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 3677788999999999999988753
No 206
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=68.58 E-value=64 Score=36.03 Aligned_cols=135 Identities=16% Similarity=0.161 Sum_probs=71.8
Q ss_pred HHHhhhCCCChHHHHHHHHHHH-HHHhhccccccccchHHHHHHhhc------CCChhHHHHHHHHHHHHhhcCCC----
Q 002971 85 PLQRCLKDDDPYVRKTAAICVA-KLYDINAELVEDRGFLESLKDLIS------DNNPMVVANAVAALAEIEENSSR---- 153 (862)
Q Consensus 85 ~v~~~l~d~~~yVRk~A~~~l~-kl~~~~p~~~~~~~~~~~l~~lL~------d~d~~V~~~a~~~l~~i~~~~~~---- 153 (862)
.|++-+..++.+-||.||.-++ .+.+..++.+.. -+...+..+|. ..|+.-.=.|+.++..++.....
T Consensus 214 YIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~-i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~G 292 (370)
T PF08506_consen 214 YIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTS-ILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSG 292 (370)
T ss_dssp HHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB
T ss_pred HHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCC
Confidence 3344443344444555666555 466666665542 24456666665 34555566788888888755311
Q ss_pred -----CcccccHHHHHHHHHHhc---cCChhHHHHHHHHHhhcccc-cHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 002971 154 -----PIFEITSHTLSKLLTALN---ECTEWGQVFILDALSRYKAA-DAREAENIVERVTPRLQHANCAVVLSAVK 220 (862)
Q Consensus 154 -----~~~~l~~~~~~~Ll~~l~---~~~~w~q~~iL~~L~~~~~~-~~~~~~~il~~v~~~l~~~n~aV~~eai~ 220 (862)
..+++..=...+++-.|. ...||++...++.+..|... +.+....++..+..+|++.+..|---|+.
T Consensus 293 vt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~ 368 (370)
T PF08506_consen 293 VTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAI 368 (370)
T ss_dssp -S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHH
T ss_pred cccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhh
Confidence 011111000111111222 45799999999999988654 33455677888888998877765444443
No 207
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=68.55 E-value=2.4e+02 Score=32.99 Aligned_cols=104 Identities=13% Similarity=0.112 Sum_probs=52.4
Q ss_pred HHHHHHHHhhc-CCChHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhChh--
Q 002971 198 NIVERVTPRLQ-HANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPT-- 273 (862)
Q Consensus 198 ~il~~v~~~l~-~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~-- 273 (862)
++++.++++-+ .+++.=++.-++.|+.+. .-.+|+..+-+. ....-+++-+ +++.++||=.|+.|..++..-.+
T Consensus 49 r~vn~IL~~Kk~~si~dRil~fl~~f~~Y~-~~~dpeg~~~V~-~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eID 126 (885)
T COG5218 49 RVVNTILACKKNPSIPDRILSFLKRFFEYD-MPDDPEGEELVA-GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREID 126 (885)
T ss_pred HHHHHhhccccCCCcHHHHHHHHHHHHHhc-CCCChhhhHHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHH
Confidence 44556666555 445555566666666642 123565433211 1111122223 57889999999888888754221
Q ss_pred -hhhcc-c-eEEEecCCCcHHHHHHHHHHHHHh
Q 002971 274 -ILAHE-I-KVFFCKYNDPIYVKMEKLEIMIKL 303 (862)
Q Consensus 274 -~~~~~-~-~~~~~l~~d~~~Ik~~~L~lL~~l 303 (862)
.+.+- . +...-+++....+|+.|+-.|...
T Consensus 127 e~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~ 159 (885)
T COG5218 127 EVLANGLLEKLSERLFDREKAVRREAVKVLCYY 159 (885)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 11110 0 011122345566666666666554
No 208
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=68.01 E-value=10 Score=27.16 Aligned_cols=28 Identities=36% Similarity=0.417 Sum_probs=24.9
Q ss_pred HHHHHHhhhCCCChHHHHHHHHHHHHHH
Q 002971 82 LCDPLQRCLKDDDPYVRKTAAICVAKLY 109 (862)
Q Consensus 82 l~~~v~~~l~d~~~yVRk~A~~~l~kl~ 109 (862)
.++.+.++|.+.++-||+.|+.|+..+.
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 5788999999999999999999998764
No 209
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=66.08 E-value=37 Score=41.33 Aligned_cols=170 Identities=14% Similarity=0.105 Sum_probs=101.2
Q ss_pred HHhhcCC-CCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHH-HHhhccccccccchHHHHHHh
Q 002971 51 FVKDSQD-PNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAK-LYDINAELVEDRGFLESLKDL 128 (862)
Q Consensus 51 l~kDl~~-~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~k-l~~~~p~~~~~~~~~~~l~~l 128 (862)
+-|-|-. .+|..-++|.+.|..+.+|++-.......--.+.|.++ ++|.+-.+-.+ +|+.. .+- +..|.+.+.
T Consensus 801 v~KaLl~R~~~~s~~ia~klld~Ls~~~~g~~aa~~fsiim~D~~~-~~~r~~~a~~riLykQR--fF~--~ivP~l~~~ 875 (1030)
T KOG1967|consen 801 VTKALLLRNHPESSEIAEKLLDLLSGPSTGSPAAKLFSIIMSDSNP-LLKRKGHAEPRILYKQR--FFC--DIVPILVSK 875 (1030)
T ss_pred HHHHHHHcCCcccchHHHHHHHhcCCccccchHHHhhHhhhccChH-HhhhccccchhHHHHHH--HHH--hhHHHHHHH
Confidence 3454433 35777899999999999988887766555555556555 56666666654 44421 111 245666666
Q ss_pred hcCCChhHHHHHHHHHHHHhhcCCCC-cccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccH----HHHHHHHHHH
Q 002971 129 ISDNNPMVVANAVAALAEIEENSSRP-IFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADA----REAENIVERV 203 (862)
Q Consensus 129 L~d~d~~V~~~a~~~l~~i~~~~~~~-~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~----~~~~~il~~v 203 (862)
..-...++..+-+.+|..+..+-|.+ ..+-.+..++=|++.|..++.-.|+..++++.......+ +....++..+
T Consensus 876 ~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~l 955 (1030)
T KOG1967|consen 876 FETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYL 955 (1030)
T ss_pred hccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHH
Confidence 65444455566677777777666654 344455667777888887788788887777765543322 2233333333
Q ss_pred HHhhc-CC-Ch-HHHHHHHHHHHHh
Q 002971 204 TPRLQ-HA-NC-AVVLSAVKMILQQ 225 (862)
Q Consensus 204 ~~~l~-~~-n~-aV~~eai~~i~~~ 225 (862)
...-+ +. |+ +|+..|.+++-.+
T Consensus 956 Lsls~~~~n~~~~VR~~ALqcL~aL 980 (1030)
T KOG1967|consen 956 LSLSSDNDNNMMVVREDALQCLNAL 980 (1030)
T ss_pred HhcCCCCCcchhHHHHHHHHHHHHH
Confidence 33222 22 23 5556666666544
No 210
>cd00238 ERp29c ERp29 and ERp38, C-terminal domain; composed of the protein disulfide isomerase (PDI)-like proteins ERp29 and ERp38. ERp29 (also called ERp28) is a ubiquitous endoplasmic reticulum (ER)-resident protein expressed in high levels in secretory cells. It contains a redox inactive TRX-like domain at the N-terminus. The expression profile of ERp29 suggests a role in secretory protein production, distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex and is essential in regulating the secretion of thyroglobulin. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. ERp38 is a P5-like protein, first isolated from alfalfa (the cDNA clone was named G1), which contains two redox active TRX domains at the N-terminus, like human P5.
Probab=65.69 E-value=48 Score=28.94 Aligned_cols=59 Identities=15% Similarity=0.352 Sum_probs=42.8
Q ss_pred HhhhhccHHHHHHHHHHHHHHHHhhh----HhHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHh
Q 002971 318 EYATEVDVDFVRKAVRAIGRCAIKLE----RAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRR 378 (862)
Q Consensus 318 ~y~~~~d~~~~~~~i~~I~~la~k~~----~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~ 378 (862)
+|+...+ +-+.+++..+...+..+. ..+..|+.++-+++..+.+|+..| +.++..|+.+
T Consensus 10 ~f~~~~~-~~~~~~l~~~~~~~~~l~~~~~~~a~~Y~kvm~Ki~~kg~~yv~~E-~~RL~~iL~~ 72 (93)
T cd00238 10 EFVDASD-EERKELLEKVKEAVEKLKEAEAKYAKYYVKVMEKILEKGEDYVEKE-LARLERLLEK 72 (93)
T ss_pred HHhccch-hHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHcchhHHHHH-HHHHHHHHhc
Confidence 4555444 446667776666665542 567889999999888888898887 6888888887
No 211
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=65.52 E-value=39 Score=33.56 Aligned_cols=119 Identities=19% Similarity=0.299 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHhcCCC---Cc--HHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC-------------------------
Q 002971 25 LKKLVYLYLINYAKSQ---PD--LAILAVNTFVKDSQDPNPLIRALAVRTMGCIR------------------------- 74 (862)
Q Consensus 25 ~Kkl~Yl~l~~~~~~~---~e--l~~L~intl~kDl~~~n~~ir~lALr~l~~i~------------------------- 74 (862)
.||..|=|+..+.... +. -.-| ...+ +.|+++-+|+.|+.+++.+-
T Consensus 18 ~~r~l~~yW~~llP~~~~~~~~~~~sL-lt~i---l~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~ 93 (182)
T PF13251_consen 18 DKRSLFGYWPALLPDSVLQGRPATPSL-LTCI---LKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSS 93 (182)
T ss_pred CCceeHhhHHHHCCCCCCcCCCCCcch-hHHH---HcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHH
Confidence 4788899999998776 11 0111 1122 35789999999999998641
Q ss_pred -hhhhHHHHHHHHHhhhCC-CChHHHHHHHHHHHHHHhh------ccccccccchHHHHHHhhcCCChhHHHHHHHHHHH
Q 002971 75 -VDKITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDI------NAELVEDRGFLESLKDLISDNNPMVVANAVAALAE 146 (862)
Q Consensus 75 -~~~~~~~l~~~v~~~l~d-~~~yVRk~A~~~l~kl~~~------~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~ 146 (862)
...++..+...+..+|.+ .++-+---.+-|+.-+... .++++.. ++..+..++.+.|+.|..+++.++.-
T Consensus 94 tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~--~v~~v~~~l~~~d~~v~v~~l~~~~~ 171 (182)
T PF13251_consen 94 TLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTE--VVTQVRPLLRHRDPNVRVAALSCLGA 171 (182)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHH--HHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 112333444555555554 4555555555555555443 3455543 77788888999999999888888876
Q ss_pred Hhh
Q 002971 147 IEE 149 (862)
Q Consensus 147 i~~ 149 (862)
+..
T Consensus 172 l~s 174 (182)
T PF13251_consen 172 LLS 174 (182)
T ss_pred HHc
Confidence 654
No 212
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=65.25 E-value=17 Score=35.55 Aligned_cols=59 Identities=19% Similarity=0.243 Sum_probs=44.2
Q ss_pred CChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCC
Q 002971 93 DDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (862)
Q Consensus 93 ~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~ 152 (862)
.---+||.|.-|++.+....++.+.-..|.+++..-|.| ++.+..-+...+..++...|
T Consensus 39 DGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p 97 (169)
T PF08623_consen 39 DGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAP 97 (169)
T ss_dssp GGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-H
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCH
Confidence 334699999999999999888777656688999999999 77777766666666655443
No 213
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=64.86 E-value=72 Score=30.37 Aligned_cols=84 Identities=15% Similarity=0.179 Sum_probs=60.2
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---h----hhhH-HHHHHHHHhhhCC-CChHH
Q 002971 27 KLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---V----DKIT-EYLCDPLQRCLKD-DDPYV 97 (862)
Q Consensus 27 kl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~---~----~~~~-~~l~~~v~~~l~d-~~~yV 97 (862)
--+-|-++-....+++-+.-++..|+|=++++||.+.-+||..|-.+. . .+++ ..+...+.+++.+ .++-|
T Consensus 18 w~~il~icD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~V 97 (144)
T cd03568 18 WGLILDVCDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTV 97 (144)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHH
Confidence 334455666666667778889999999999999999999988775432 1 2333 3556677788877 78889
Q ss_pred HHHHHHHHHHHHh
Q 002971 98 RKTAAICVAKLYD 110 (862)
Q Consensus 98 Rk~A~~~l~kl~~ 110 (862)
|++....+.....
T Consensus 98 k~kil~li~~W~~ 110 (144)
T cd03568 98 KEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 9888777765543
No 214
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=64.59 E-value=2.2e+02 Score=31.21 Aligned_cols=110 Identities=15% Similarity=0.164 Sum_probs=70.2
Q ss_pred HHHhHHHHHhcCCChhhhHHHHHHHHHhhhC-CCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHH
Q 002971 61 LIRALAVRTMGCIRVDKITEYLCDPLQRCLK-DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVAN 139 (862)
Q Consensus 61 ~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~-d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~ 139 (862)
..|.+..+.|+.+....+...+...+...+. +.|.-....++-++.+-+...-..++ ...++.+.+-|.|+.+.|...
T Consensus 2 d~r~~~~~~L~~l~~~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~-~~~~~~~~kGl~~kk~~vR~~ 80 (339)
T PF12074_consen 2 DQRVLHASMLSSLPSSSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELP-KKVVDAFKKGLKDKKPPVRRA 80 (339)
T ss_pred cHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCC-HHHHHHHHHHhcCCCCcHHHH
Confidence 4567777777777754455555555555554 58888888888888876655522222 258899999999999888887
Q ss_pred HHHHHHHHhhcCC-CCcccccHHHHHHHHHHhc
Q 002971 140 AVAALAEIEENSS-RPIFEITSHTLSKLLTALN 171 (862)
Q Consensus 140 a~~~l~~i~~~~~-~~~~~l~~~~~~~Ll~~l~ 171 (862)
-+..+.++....+ .....+....+..|++.+.
T Consensus 81 w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 113 (339)
T PF12074_consen 81 WLLCLGEALWESPNSDSLKFAEPFLPKLLQSLK 113 (339)
T ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHHHHHH
Confidence 7777777765110 1123334445555555553
No 215
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=63.64 E-value=2.6e+02 Score=31.54 Aligned_cols=100 Identities=17% Similarity=0.233 Sum_probs=62.4
Q ss_pred ccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccc-cHHHHHHHHHHhcc-----CChhHHHHHHHHHhhccc-
Q 002971 118 DRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI-TSHTLSKLLTALNE-----CTEWGQVFILDALSRYKA- 190 (862)
Q Consensus 118 ~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l-~~~~~~~Ll~~l~~-----~~~w~q~~iL~~L~~~~~- 190 (862)
++++.+.+.+.+...|...+..+..++...+..+. .++.+ ....+.+|+.++.. -+--.|..++..|+.+..
T Consensus 313 ~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP 391 (604)
T KOG4500|consen 313 DPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP 391 (604)
T ss_pred CcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc
Confidence 34588888899988888888888888888776653 23332 34566777777643 344567777888876542
Q ss_pred ccHHHH---HHHHHHHHHhhcCCChHHHHHH
Q 002971 191 ADAREA---ENIVERVTPRLQHANCAVVLSA 218 (862)
Q Consensus 191 ~~~~~~---~~il~~v~~~l~~~n~aV~~ea 218 (862)
...+.. --+.+.+.+.++...|-|.|--
T Consensus 392 v~nka~~~~aGvteaIL~~lk~~~ppv~fkl 422 (604)
T KOG4500|consen 392 VSNKAHFAPAGVTEAILLQLKLASPPVTFKL 422 (604)
T ss_pred CCchhhccccchHHHHHHHHHhcCCcchHHH
Confidence 211111 1234566677776666666543
No 216
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=62.72 E-value=3.8e+02 Score=33.16 Aligned_cols=226 Identities=13% Similarity=0.112 Sum_probs=124.5
Q ss_pred CcHHHHHHHHHHhhcCCC-CHHHHhHHHHHhcCCCh-----hhhHHHHH-HHHHhhhCCCChHHHHHHHHHHHHHHhhcc
Q 002971 41 PDLAILAVNTFVKDSQDP-NPLIRALAVRTMGCIRV-----DKITEYLC-DPLQRCLKDDDPYVRKTAAICVAKLYDINA 113 (862)
Q Consensus 41 ~el~~L~intl~kDl~~~-n~~ir~lALr~l~~i~~-----~~~~~~l~-~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p 113 (862)
.+...-.++.+...+.+. -|..-+-|+-+++.... +.+.+... ..+.-+..|..|+||-+|+.++.-.. .+
T Consensus 444 dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~~ 521 (1005)
T KOG2274|consen 444 DDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC--KV 521 (1005)
T ss_pred HHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc--Cc
Confidence 455666777888888653 57666788888886543 44444433 34445556899999999998777655 33
Q ss_pred cccc--ccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhc--cCChhHHHHHHHHHhhcc
Q 002971 114 ELVE--DRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALN--ECTEWGQVFILDALSRYK 189 (862)
Q Consensus 114 ~~~~--~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~--~~~~w~q~~iL~~L~~~~ 189 (862)
+.+. .+.+++.|..+..+...-|.....-+|+.+++-+|..-...-.++..-+.+... .-+|.......+++....
T Consensus 522 ~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~ 601 (1005)
T KOG2274|consen 522 KVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELL 601 (1005)
T ss_pred eeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 3332 135777888888888888888778888888887765322111111122222211 123432222222222211
Q ss_pred ccc---HHHHHHHHHHHHHhhcCCC-------hHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhcc--cCChhHH
Q 002971 190 AAD---AREAENIVERVTPRLQHAN-------CAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL--SAEPEIQ 257 (862)
Q Consensus 190 ~~~---~~~~~~il~~v~~~l~~~n-------~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~ll--s~~~~ir 257 (862)
... ....+..+..+...++..+ .++....+.+++... ++| +-..+...+.+++.++. +.|.+.-
T Consensus 602 q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~t---p~p-L~~~l~~~~FpaVak~tlHsdD~~tl 677 (1005)
T KOG2274|consen 602 QIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNT---PSP-LPNLLICYAFPAVAKITLHSDDHETL 677 (1005)
T ss_pred HHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcC---CCC-ccHHHHHHHhHHhHhheeecCChHHH
Confidence 100 0122344555555555433 256666667676643 222 33333344666665543 6677666
Q ss_pred HHHHHHHHHHHhhCh
Q 002971 258 YVALRNINLIVQRRP 272 (862)
Q Consensus 258 y~aL~~l~~i~~~~p 272 (862)
-.+=.++..++...+
T Consensus 678 Q~~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 678 QNATECLRALISVTL 692 (1005)
T ss_pred HhHHHHHHHHHhcCH
Confidence 666666666665543
No 217
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=62.42 E-value=72 Score=31.61 Aligned_cols=88 Identities=20% Similarity=0.246 Sum_probs=57.5
Q ss_pred HHHHHHHhhhCC-CChHHHHHHHHHHHHHHhh-ccccccc--cchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcc
Q 002971 81 YLCDPLQRCLKD-DDPYVRKTAAICVAKLYDI-NAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIF 156 (862)
Q Consensus 81 ~l~~~v~~~l~d-~~~yVRk~A~~~l~kl~~~-~p~~~~~--~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~ 156 (862)
.+.+-....|.. .+|| |=-|..++..+.+. .++.+-. .+++..|+..|+.+|+.|+.+++.+|..+....+.--
T Consensus 38 ~~Lpif~dGL~Et~~Py-~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG- 115 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPY-RFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG- 115 (183)
T ss_pred hHHHHHHhhhhccCccH-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh-
Confidence 555666677766 6666 57788888888877 5554321 2467778899999999999999999988844332110
Q ss_pred cccHHHHHHHHHHh
Q 002971 157 EITSHTLSKLLTAL 170 (862)
Q Consensus 157 ~l~~~~~~~Ll~~l 170 (862)
+.+.+.+++|+-.+
T Consensus 116 ~aLvPyyrqLLp~l 129 (183)
T PF10274_consen 116 EALVPYYRQLLPVL 129 (183)
T ss_pred HHHHHHHHHHHHHH
Confidence 12234456655443
No 218
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=61.26 E-value=88 Score=31.81 Aligned_cols=66 Identities=14% Similarity=0.191 Sum_probs=46.6
Q ss_pred HHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCC
Q 002971 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR 153 (862)
Q Consensus 84 ~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~ 153 (862)
+.+.+-..|.+.++||.|+.+..+.-+ ..+ .. .+...+..++.|++-.|.-+.-=+|-++.+.++.
T Consensus 118 ~~l~~W~~s~~~W~rR~ai~~~l~~~~-~~~-~~--~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~ 183 (208)
T cd07064 118 PVMDEWSTDENFWLRRTAILHQLKYKE-KTD-TD--LLFEIILANLGSKEFFIRKAIGWALREYSKTNPD 183 (208)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHH-ccC-HH--HHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHH
Confidence 456777788999999999998776433 222 11 2456667778888877776666778888877654
No 219
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=60.68 E-value=84 Score=38.74 Aligned_cols=132 Identities=15% Similarity=0.193 Sum_probs=95.2
Q ss_pred CCCcchHHHHHHHHHHhcCCCC----cHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCCh
Q 002971 20 TENLELKKLVYLYLINYAKSQP----DLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDP 95 (862)
Q Consensus 20 s~~~~~Kkl~Yl~l~~~~~~~~----el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~d~~~ 95 (862)
..|.....+.-.++..++..-. ..+..+.+.|..-+.+..+.+|-.++.++=.+...--...+.+.|...+++.+|
T Consensus 306 DaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~knp 385 (815)
T KOG1820|consen 306 DANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALKGKNP 385 (815)
T ss_pred CcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCh
Confidence 3455555566666666665443 357778888888888888888887777776666555556677778888999999
Q ss_pred HHHHHHHHHHHHHHhhcc-ccccc---cchHHHHHHhhcCCChhHHHHHHHHHHHHhhcC
Q 002971 96 YVRKTAAICVAKLYDINA-ELVED---RGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (862)
Q Consensus 96 yVRk~A~~~l~kl~~~~p-~~~~~---~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 151 (862)
-+|--....+-+.++..+ ..+.. .+..+.+....+|++.-|.-+|..++..+....
T Consensus 386 ~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 386 QIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVH 445 (815)
T ss_pred hhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHh
Confidence 999888888888888765 22221 246677778888999999988888887776543
No 220
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=59.42 E-value=27 Score=34.59 Aligned_cols=52 Identities=21% Similarity=0.283 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhc
Q 002971 77 KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLIS 130 (862)
Q Consensus 77 ~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~ 130 (862)
-+++.++.+++++|..+++-|.+.++.++-++...++-.-+ .+.+.++++|-
T Consensus 76 PvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~--aLvPyyrqLLp 127 (183)
T PF10274_consen 76 PVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE--ALVPYYRQLLP 127 (183)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHHHH
Confidence 34567788888888888888888888888888655443322 35555555543
No 221
>PF14806 Coatomer_b_Cpla: Coatomer beta subunit appendage platform
Probab=58.30 E-value=86 Score=29.16 Aligned_cols=98 Identities=14% Similarity=0.144 Sum_probs=58.6
Q ss_pred cCCCCChHHHHHHhccCCCCccceeecCCCccCCH-HHHHHHHHhcCceeeeecc-CCCCceEE---EEEEecCCccEEE
Q 002971 752 EDGRMERGSFLETWRSLPDSNEVLKDLPGVVVSNV-EATLDLLAASNMFFIAKRK-NANQDVFY---FSAKIPPGVPFLI 826 (862)
Q Consensus 752 ~~~~~~~~~F~~~W~~l~~~~E~~~~~~~~~~~~~-~~~~~~l~~~~~~~v~~~~-~~~~~~~~---~s~~~~~~~~~L~ 826 (862)
+|..++..+|.+.|....= |-...+...- .+. +-+...++.-|+..+.... ..+...++ ++|++.-|-.+|+
T Consensus 19 ~Pa~~~~~~FR~mW~eFEW--ENKi~V~t~~-~dl~~yl~~i~k~tnM~~Ltp~~~l~~~~~fl~~Nlya~S~fgedaL~ 95 (129)
T PF14806_consen 19 KPATCSDEEFRSMWAEFEW--ENKISVNTNI-TDLREYLDHIMKSTNMKCLTPESALSGDCGFLSANLYARSIFGEDALA 95 (129)
T ss_pred CcccCCHHHHHHHHHhhee--eeeEEEecCC-CCHHHHHHHHHHhcCcceeccccccCCCCCEEEEEEEEEeccCCeeEE
Confidence 6999999999999988743 2233333221 244 4455556777887776421 11222111 4466666777898
Q ss_pred EEEeec-CCCc--eEEEEecCCCchHHHH
Q 002971 827 ELTTVI-GNPG--VKCAIKTPNPDIASLF 852 (862)
Q Consensus 827 ~l~~~~-~~~~--~~ltvrs~~~~v~~~l 852 (862)
-+.+.. +++. -.+-+||...+++--+
T Consensus 96 Nlsiek~~~~~i~G~vRIRSk~qgia~sl 124 (129)
T PF14806_consen 96 NLSIEKQADGKISGHVRIRSKTQGIALSL 124 (129)
T ss_pred EEEEEecCCCeEEEEEEEeeCCcChhhhh
Confidence 887765 2233 3567777777765433
No 222
>PF07749 ERp29: Endoplasmic reticulum protein ERp29, C-terminal domain; InterPro: IPR011679 ERp29 is a ubiquitously expressed endoplasmic reticulum protein found in mammals []. This protein is found associated with an N-terminal thioredoxin-like domain (IPR006662 from INTERPRO), which is homologous to the domain of human protein disulphide isomerase (PDI). ERp29 may help mediate the chaperone function of PDI. The C-terminal Erp29 domain has a 5-helical bundle fold. ERp29 is thought to form part of the thyroglobulin folding complex []. ; GO: 0005783 endoplasmic reticulum; PDB: 2QC7_B 1G7D_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_A.
Probab=57.26 E-value=55 Score=28.70 Aligned_cols=59 Identities=22% Similarity=0.338 Sum_probs=43.6
Q ss_pred HhhhhccHHHHHHHHHHHHHHHHhhh----HhHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHh
Q 002971 318 EYATEVDVDFVRKAVRAIGRCAIKLE----RAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRR 378 (862)
Q Consensus 318 ~y~~~~d~~~~~~~i~~I~~la~k~~----~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~ 378 (862)
+|+...+ +=+.+++......+...+ ..+.+|+.++-+++..+.+|+..| +.++..|+..
T Consensus 12 ~f~~~~~-~~~~~i~~~~~~~~~~l~~~~~~~a~~Yvkvm~Ki~~~g~~fv~~E-~~RL~~lL~~ 74 (95)
T PF07749_consen 12 EFVAASD-DEREEILEEAKAAAEKLEDSAAKYAKYYVKVMEKIIEKGEEFVAKE-IARLERLLEG 74 (95)
T ss_dssp HHHHS-C-HHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHHHHHHSGTHHHHHH-HHHHHHHHHS
T ss_pred HHHcCcH-HHHHHHHHHHHHHHHhccchhhHhHHHHHHHHHHHHHccchHHHHH-HHHHHHHHhc
Confidence 5555555 556667776666666543 568899999999999999999888 6788888873
No 223
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=57.17 E-value=3.7e+02 Score=32.26 Aligned_cols=142 Identities=13% Similarity=0.130 Sum_probs=94.4
Q ss_pred ccchHHHhHh---ccCCCcchHHHHHHHHHHhcCCCCcH--HHHHHHHHHhhcCCCC--HHHHhHHHHHhcCCChhhhHH
Q 002971 8 SSLFTDVVNC---MQTENLELKKLVYLYLINYAKSQPDL--AILAVNTFVKDSQDPN--PLIRALAVRTMGCIRVDKITE 80 (862)
Q Consensus 8 s~lf~~vv~l---~~s~~~~~Kkl~Yl~l~~~~~~~~el--~~L~intl~kDl~~~n--~~ir~lALr~l~~i~~~~~~~ 80 (862)
+.-|.++... +..++.++|.=-+-.+....+.-||. +..+.+-+..++.-.+ ..+.-..+..---+..++.-.
T Consensus 250 ~n~fvd~~~fLeel~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~~eyq~ 329 (690)
T KOG1243|consen 250 RNDFVDTLLFLEELRLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDEEEYQV 329 (690)
T ss_pred cchHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhcccccccc
Confidence 3345555543 45577778877777777766655552 3334444444443332 334444444444455667777
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHHHhh-ccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhc
Q 002971 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (862)
Q Consensus 81 ~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~-~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 150 (862)
.++|.|.++....+.-||-.=+.-+-+.... .++.+.+ ...+.+..-+.|+|+.++..++..+..++..
T Consensus 330 ~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d-~I~phv~~G~~DTn~~Lre~Tlksm~~La~k 399 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILND-QIFPHVALGFLDTNATLREQTLKSMAVLAPK 399 (690)
T ss_pred chhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcc-hhHHHHHhhcccCCHHHHHHHHHHHHHHHhh
Confidence 8899999999999999998766666665553 4444543 6788888999999999999999888877654
No 224
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=56.74 E-value=93 Score=29.43 Aligned_cols=53 Identities=13% Similarity=0.012 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCC
Q 002971 99 KTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP 154 (862)
Q Consensus 99 k~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~ 154 (862)
-.+.+-+.-+....|+... ..+..|.+-|+.+||.|+.-|+.+|..+.++ |+.
T Consensus 19 w~~ileicD~In~~~~~~k--~a~rai~krl~~~n~~v~l~AL~LLe~~vkN-CG~ 71 (139)
T cd03567 19 WEAIQAFCEQINKEPEGPQ--LAVRLLAHKIQSPQEKEALQALTVLEACMKN-CGE 71 (139)
T ss_pred HHHHHHHHHHHHcCCccHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-cCH
Confidence 4556667766666666443 3667888889999999999999988777665 553
No 225
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=55.62 E-value=6.5e+02 Score=33.65 Aligned_cols=96 Identities=23% Similarity=0.282 Sum_probs=52.1
Q ss_pred chHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHH-HHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHH
Q 002971 120 GFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHT-LSKLLTALNECTEWGQVFILDALSRYKAADAREAEN 198 (862)
Q Consensus 120 ~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~-~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~ 198 (862)
.+.+.|.++|.-....+.--.+..|-||...+. |.. +..|...+ ..++-+.+-+|+.|..+.-. ++...+
T Consensus 192 ~l~~kl~~~l~~ap~~lq~eiI~~LPeIl~ds~-------h~~v~~~L~~ll-~~~~~L~~~iLd~Ls~L~Ls-~~~l~~ 262 (1426)
T PF14631_consen 192 ELTDKLFEVLSIAPVELQKEIISSLPEILDDSQ-------HDEVVEELLELL-QENPELTVPILDALSNLNLS-PELLEE 262 (1426)
T ss_dssp HHHHHHHHHHHHS-TTTHHHHHHTHHHHS-GGG-------HHHHHHHHHHHH-HH-STTHHHHHHHHHHS----HHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcchh-------HHHHHHHHHHHH-hcCCchhhhHHHHHhcCCCC-HHHHHH
Confidence 455666666665555566667777777764432 222 33333333 33555678889999887643 344455
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHH
Q 002971 199 IVERVTPRLQHANCAVVLSAVKMILQ 224 (862)
Q Consensus 199 il~~v~~~l~~~n~aV~~eai~~i~~ 224 (862)
+-+.+...+.+.....+=..++.+++
T Consensus 263 vr~~vl~~L~s~~~e~LP~lirFLL~ 288 (1426)
T PF14631_consen 263 VREKVLEKLSSVDLEDLPVLIRFLLQ 288 (1426)
T ss_dssp HHHHHHHSTTSS-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChhhhHHHHHHHHH
Confidence 55666666665554444444556555
No 226
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=55.31 E-value=57 Score=31.51 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=36.6
Q ss_pred CCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHH
Q 002971 92 DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEI 147 (862)
Q Consensus 92 d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i 147 (862)
...+-||-.|.+++.|+++..++...+ .+.+.+..++.+.+..-...++.++..+
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~l 70 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTAL 70 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHH
Confidence 467779999999999998777766553 3556667777654433444445555444
No 227
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=55.08 E-value=15 Score=33.72 Aligned_cols=43 Identities=16% Similarity=0.117 Sum_probs=35.4
Q ss_pred hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccccc
Q 002971 75 VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE 117 (862)
Q Consensus 75 ~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~ 117 (862)
++.-+..+.+.+.+-|.|++|+|+.||+-.+-++.+..++.+.
T Consensus 32 s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~ 74 (122)
T cd03572 32 SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFK 74 (122)
T ss_pred CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHH
Confidence 4556778888889999999999999999999999888775443
No 228
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=54.40 E-value=22 Score=32.43 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=40.0
Q ss_pred EEEEEEEecCCCCcccceeeecccccCcccCCCCCCCcCCCCCeeeEEEeeeecCCCCCCCCCcceEEEEe
Q 002971 661 FYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVK 731 (862)
Q Consensus 661 ~l~l~~~N~s~~~it~f~~q~~~n~~gl~~~~~~~~~~l~pg~~~~~~i~i~~~~~~~~~~~~~~l~~~~k 731 (862)
.+.+.+.|++..+.+ |.+.+...+ |+.+......-.|+||+.....+-|.......... ...+.|.+.
T Consensus 34 ~Y~lkl~Nkt~~~~~-~~i~~~g~~-~~~l~~~~~~i~v~~g~~~~~~v~v~~p~~~~~~~-~~~i~f~v~ 101 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRT-YTISVEGLP-GAELQGPENTITVPPGETREVPVFVTAPPDALKSG-STPITFTVT 101 (118)
T ss_dssp EEEEEEEE-SSS-EE-EEEEEES-S-S-EE-ES--EEEE-TT-EEEEEEEEEE-GGG-SSS-EEEEEEEEE
T ss_pred EEEEEEEECCCCCEE-EEEEEecCC-CeEEECCCcceEECCCCEEEEEEEEEECHHHccCC-CeeEEEEEE
Confidence 588999999999877 787777533 66663322333789999999998888876553321 124666664
No 229
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=53.66 E-value=1.8e+02 Score=31.14 Aligned_cols=74 Identities=15% Similarity=0.187 Sum_probs=53.7
Q ss_pred hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccc----cccch----HHHHHHhhc--------CCChhHHHH
Q 002971 76 DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELV----EDRGF----LESLKDLIS--------DNNPMVVAN 139 (862)
Q Consensus 76 ~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~----~~~~~----~~~l~~lL~--------d~d~~V~~~ 139 (862)
.+..+-++|++..++.|.++.+|..++.|+.++....|... ...|+ .+.+..+|. +..+.++..
T Consensus 114 ~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ 193 (282)
T PF10521_consen 114 SQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQA 193 (282)
T ss_pred HHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHH
Confidence 34456789999999999999999999999999998766433 33333 344555555 566667777
Q ss_pred HHHHHHHHhh
Q 002971 140 AVAALAEIEE 149 (862)
Q Consensus 140 a~~~l~~i~~ 149 (862)
|..++..+.+
T Consensus 194 ay~~L~~L~~ 203 (282)
T PF10521_consen 194 AYPALLSLLK 203 (282)
T ss_pred HHHHHHHHHH
Confidence 7777766644
No 230
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.28 E-value=5.2e+02 Score=32.27 Aligned_cols=54 Identities=17% Similarity=0.284 Sum_probs=37.8
Q ss_pred CCHHHHhHHHHHhcCCC---hhhhHHHHHHH---HHhhhCCCChHHHHHHHHHHHHHHhh
Q 002971 58 PNPLIRALAVRTMGCIR---VDKITEYLCDP---LQRCLKDDDPYVRKTAAICVAKLYDI 111 (862)
Q Consensus 58 ~n~~ir~lALr~l~~i~---~~~~~~~l~~~---v~~~l~d~~~yVRk~A~~~l~kl~~~ 111 (862)
.|..-.|.+|..++.+. ..+..+.++.. |..-+.+++++|+..|..|+.++...
T Consensus 560 Snv~~~Ci~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a 619 (1014)
T KOG4524|consen 560 SNEFAVCIVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADA 619 (1014)
T ss_pred cchhhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 46666678887777664 44555544433 33345679999999999999998764
No 231
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=51.77 E-value=2.1e+02 Score=34.08 Aligned_cols=54 Identities=9% Similarity=0.281 Sum_probs=24.5
Q ss_pred ccccCCH-HHHHHHHhhhCCC--CCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHh
Q 002971 414 AERIDNA-DELLESFLESFPE--EPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNN 468 (862)
Q Consensus 414 ~~~i~~~-~~~l~~~~~~~~~--e~~~v~~~iLta~~Kl~~~~~~~~~~~~i~~~l~~ 468 (862)
...++.+ .-+...+.++|+. .+..+....+..+.++..-.|.- ..+++.-+++.
T Consensus 153 l~lvP~s~~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~~Y~P~L-~~~Il~lIi~r 209 (563)
T PF05327_consen 153 LRLVPTSPSFLIPILVQNFPHKRKSKDEHVNYVRNLLRLTEYCPEL-RSDILSLIIER 209 (563)
T ss_dssp HHH-GGGHHHHHHHHHHTS--TTS-HHHHHHHHHHHHHHHCC-GGG-HHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHcCcCCCCChHHHHHHHHHHHHHHcchHHH-HHHHHHHHHHH
Confidence 3444433 3344455556653 44555566666666666555542 23344444444
No 232
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=51.18 E-value=94 Score=28.04 Aligned_cols=65 Identities=15% Similarity=0.210 Sum_probs=45.4
Q ss_pred HHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCC
Q 002971 86 LQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (862)
Q Consensus 86 v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~ 152 (862)
|.++-.+..+-.-....+-+..+...+++...+ ....|.+-|.++|+.|+.-|+.+|..+.++.+
T Consensus 5 v~~AT~~~~~~p~~~~i~~i~d~~~~~~~~~~~--~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g 69 (115)
T cd00197 5 VEKATSNENMGPDWPLIMEICDLINETNVGPKE--AVDAIKKRINNKNPHVVLKALTLLEYCVKNCG 69 (115)
T ss_pred HHHHcCCCCCCCCHHHHHHHHHHHHCCCccHHH--HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcc
Confidence 344444433333445566666666666665543 77888888999999999999999998888754
No 233
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.95 E-value=1.5e+02 Score=31.87 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCC------ChHHHHHHHHHhcccCCCChHHHHHHHHHHHHhc
Q 002971 434 EPAQVQLQLLTATVKLFLKKPTE------GPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLS 490 (862)
Q Consensus 434 e~~~v~~~iLta~~Kl~~~~~~~------~~~~~i~~~l~~~~~~s~~~dvrdRA~~y~~ll~ 490 (862)
.++.+|.++|.|++-+....+.- +..++++.+-++ ..|+|+|.-+...-.+|-
T Consensus 256 pdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~----e~ded~~~ace~vvq~Lv 314 (353)
T KOG2973|consen 256 PDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKW----EEDEDIREACEQVVQMLV 314 (353)
T ss_pred CChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcC----CCcHHHHHHHHHHHHHHH
Confidence 34555666666666555544320 123333333332 256777766655555543
No 234
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=50.45 E-value=3.1e+02 Score=28.39 Aligned_cols=133 Identities=17% Similarity=0.079 Sum_probs=83.5
Q ss_pred hccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCCh--hhhHHHHHHHHHh------
Q 002971 17 CMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRV--DKITEYLCDPLQR------ 88 (862)
Q Consensus 17 l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~--~~~~~~l~~~v~~------ 88 (862)
+-..++.+...-..-.+-.++.++.+..-+++.++..=.+.+....++.++|-++.+-. +...+.+-+.+..
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~~ 88 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRIP 88 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence 33444444444333344444444436666777777766666666668888888887752 2222333322222
Q ss_pred -hhC--CCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhh-cCCChhHHHHHHHHHHHHhhcC
Q 002971 89 -CLK--DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLI-SDNNPMVVANAVAALAEIEENS 151 (862)
Q Consensus 89 -~l~--d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~~~ 151 (862)
... +....+.-..+.++.-+.+..|+.-. +++..|..+| .+.++.+.+.++-++..+++.+
T Consensus 89 ~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~--~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~ 153 (234)
T PF12530_consen 89 SSFSSKDEFWECLISIAASIRDICCSRPDHGV--DLLPLLSGCLNQSCDEVAQALALEALAPLCEAE 153 (234)
T ss_pred cccCCCcchHHHHHHHHHHHHHHHHhChhhHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 222 23344444556778888889999544 4889999999 7888899999999999998654
No 235
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=49.54 E-value=1e+02 Score=29.35 Aligned_cols=52 Identities=15% Similarity=0.177 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCC
Q 002971 100 TAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP 154 (862)
Q Consensus 100 ~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~ 154 (862)
..++-+.-+.+..++... ..+..|.+-|..+||.|+.-|+.+|..+.++ |+.
T Consensus 19 ~~il~icD~I~~~~~~~k--~a~ral~KRl~~~n~~v~l~AL~LLe~~vkN-CG~ 70 (144)
T cd03568 19 GLILDVCDKVKSDENGAK--DCLKAIMKRLNHKDPNVQLRALTLLDACAEN-CGK 70 (144)
T ss_pred HHHHHHHHHHhcCCccHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-CCH
Confidence 344455555555544333 3667788888899999999999988777666 443
No 236
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.44 E-value=4.9e+02 Score=30.40 Aligned_cols=98 Identities=18% Similarity=0.352 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhh-cc-hhHHHHHHHHHHHHHhCcccHHHHHHHHHHhhccCC-chHH
Q 002971 326 DFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK-VN-YVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLD-EPEA 402 (862)
Q Consensus 326 ~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~-~~-~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~-~~~~ 402 (862)
+||.++...+..++--...+ .|+..+..-++.+ .+ ...+.++-.++.+..+-+.-...++..+.+.+-.+. ....
T Consensus 367 ~fR~~v~dvl~Dv~~iigs~--e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp~Q~~~ 444 (559)
T KOG2081|consen 367 EFRLKVGDVLKDVAFIIGSD--ECLKQMYIRLKENNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLPEQAPL 444 (559)
T ss_pred HHHHHHHHHHHHHHHHhCcH--HHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCccchhH
Confidence 46767776666666554433 5566655555542 22 234444445666665544444455555555443322 2226
Q ss_pred HHHHHHHHhhcccccCCHHHHHH
Q 002971 403 KASMIWIIGEYAERIDNADELLE 425 (862)
Q Consensus 403 ~~~~~wilGEy~~~i~~~~~~l~ 425 (862)
+.+.+-++|+|++-++..+..++
T Consensus 445 ~~ts~ll~g~~~ew~~~~p~~le 467 (559)
T KOG2081|consen 445 RYTSILLLGEYSEWVEQHPELLE 467 (559)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHH
Confidence 77888999999998876554443
No 237
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=49.39 E-value=1e+02 Score=32.91 Aligned_cols=76 Identities=11% Similarity=0.178 Sum_probs=46.9
Q ss_pred eeEEEEEEEecCCCCcccceeee--c-ccccCcccCCCCC--C-CcCCCCCeeeEEEeeeecCCCCCCCCCcceEEEEec
Q 002971 659 QVFYSMLFENNTQTPLDGFMIQF--N-KNTFGLAAGGALQ--V-PQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKN 732 (862)
Q Consensus 659 ~~~l~l~~~N~s~~~it~f~~q~--~-~n~~gl~~~~~~~--~-~~l~pg~~~~~~i~i~~~~~~~~~~~~~~l~~~~k~ 732 (862)
...+-+.|+|+...+++-..+.- . +..|..-+++... . ..++||++.+..-.+.....+...+..+.+.+.+++
T Consensus 100 ~~~~LvgftN~g~~~~~V~~i~aSl~~p~d~~~~iqNfTa~~y~~~V~pg~~aT~~YsF~~~~~l~pr~f~L~i~l~y~d 179 (285)
T PF03896_consen 100 PVKFLVGFTNKGSEPFTVESIEASLRYPQDYSYYIQNFTAVRYNREVPPGEEATFPYSFTPSEELAPRPFGLVINLIYED 179 (285)
T ss_pred eEEEEEEEEeCCCCCEEEEEEeeeecCccccceEEEeecccccCcccCCCCeEEEEEEEecchhcCCcceEEEEEEEEEe
Confidence 34677888898887776666532 2 2233333333322 2 288899977776666555566666666777778875
Q ss_pred CC
Q 002971 733 NQ 734 (862)
Q Consensus 733 ~~ 734 (862)
..
T Consensus 180 ~~ 181 (285)
T PF03896_consen 180 SD 181 (285)
T ss_pred CC
Confidence 44
No 238
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=48.65 E-value=96 Score=27.62 Aligned_cols=62 Identities=19% Similarity=0.320 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhcCCCCChHHH------HHHHHHhcccCCCChHHHHHHHHHHHHhcCCHHHHHHhhcc
Q 002971 439 QLQLLTATVKLFLKKPTEGPQQM------IQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLA 502 (862)
Q Consensus 439 ~~~iLta~~Kl~~~~~~~~~~~~------i~~~l~~~~~~s~~~dvrdRA~~y~~ll~~~~~~~~~~v~~ 502 (862)
|..++..++-+..+++. .++. +.-+|+.|..|..||-+|++|.+-.|-|-.+.+...++|..
T Consensus 3 K~~lvrlianl~~~~~~--~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKE--VQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHH--HHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 44455555566666554 3433 45678888889999999999999998887666666666644
No 239
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=47.29 E-value=4e+02 Score=32.08 Aligned_cols=205 Identities=11% Similarity=0.092 Sum_probs=89.0
Q ss_pred cCChhHHHHHHHHHHHHHhhChhhh--hccceEEE-ecCCCcHHHHHHHHHHHHHhcCcCc--HHHHHHHHHHhhh-hcc
Q 002971 251 SAEPEIQYVALRNINLIVQRRPTIL--AHEIKVFF-CKYNDPIYVKMEKLEIMIKLASDRN--IDQVLLEFKEYAT-EVD 324 (862)
Q Consensus 251 s~~~~iry~aL~~l~~i~~~~p~~~--~~~~~~~~-~l~~d~~~Ik~~~L~lL~~l~~~~N--v~~Iv~eL~~y~~-~~d 324 (862)
.+++.-|+.-++.|..+....|.-+ .+-+..+. -+.++...=..+=+=+++.-+-..| ...++..|..-.+ ...
T Consensus 284 ~kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~ 363 (700)
T KOG2137|consen 284 QKDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNTKMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDP 363 (700)
T ss_pred ccCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhccccccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCc
Confidence 4677888888888888887766421 11110000 0001110000011111222222233 3334444433222 222
Q ss_pred HHHHHHHHHHHHHHHHhhhH--hHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHh--CcccHHHHHHHHHHhhccCCch
Q 002971 325 VDFVRKAVRAIGRCAIKLER--AAERCISVLLELIKIKVNYVVQEAIIVIKDIFRR--YPNTYESIIATLCESLDTLDEP 400 (862)
Q Consensus 325 ~~~~~~~i~~I~~la~k~~~--~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~--~p~~~~~~i~~L~~~l~~~~~~ 400 (862)
.+..--+++.+--|.+|.++ ..+.+++.|..-++...-.+.++++.++-....- ++-.++.++.++....-.....
T Consensus 364 ~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~ 443 (700)
T KOG2137|consen 364 KQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNL 443 (700)
T ss_pred ccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccch
Confidence 22333334444445555432 2334444444444444334444444433222111 2333445555544332111233
Q ss_pred HHHHHHHHHHhhcccccCC--HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCC
Q 002971 401 EAKASMIWIIGEYAERIDN--ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPT 455 (862)
Q Consensus 401 ~~~~~~~wilGEy~~~i~~--~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~~~ 455 (862)
..+..++=++|+..+.++. ..+.+--+.......++.+.+..+....+++.+.+.
T Consensus 444 ~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~ 500 (700)
T KOG2137|consen 444 YVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYS 500 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhccc
Confidence 3455566666666655442 234444455555555666666666666666666554
No 240
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=47.00 E-value=27 Score=22.59 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=18.8
Q ss_pred HHhHHHHHhcCCChhhhHHHHHHHH
Q 002971 62 IRALAVRTMGCIRVDKITEYLCDPL 86 (862)
Q Consensus 62 ir~lALr~l~~i~~~~~~~~l~~~v 86 (862)
+|..|.+.|+.|+.++-++.|...+
T Consensus 1 VR~~Aa~aLg~igd~~ai~~L~~~L 25 (27)
T PF03130_consen 1 VRRAAARALGQIGDPRAIPALIEAL 25 (27)
T ss_dssp HHHHHHHHHGGG-SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 5788999999999987777765544
No 241
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=46.70 E-value=6.2e+02 Score=30.82 Aligned_cols=126 Identities=17% Similarity=0.091 Sum_probs=92.0
Q ss_pred cCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC--hhhhHHHHHHHHHhhhCCCChH
Q 002971 19 QTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQRCLKDDDPY 96 (862)
Q Consensus 19 ~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~--~~~~~~~l~~~v~~~l~d~~~y 96 (862)
.+++...|+|..-|+..+++.-=. -.|..|.--..++=+.++.-||.++..+- -||--..|...+.+-|.|+.--
T Consensus 280 ~~~~~~~k~Ll~WyfE~~LK~ly~---rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lVNKlGDpqnK 356 (988)
T KOG2038|consen 280 TNKRLRDKILLMWYFEHELKILYF---RFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNLLVLLVNKLGDPQNK 356 (988)
T ss_pred cccccccceehHHHHHHHHHHHHH---HHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCcchh
Confidence 366777777877777777665322 23444444445566899999999998764 5777788889999999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhH--HHHHHHHHHHHhh
Q 002971 97 VRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMV--VANAVAALAEIEE 149 (862)
Q Consensus 97 VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V--~~~a~~~l~~i~~ 149 (862)
+-.+|..-+..+...+|..-.- .++.|..++--+|.+- .+.|+..|.++.-
T Consensus 357 iaskAsylL~~L~~~HPnMK~V--vi~EIer~~FRpn~~~ra~Yyav~fLnQ~~L 409 (988)
T KOG2038|consen 357 IASKASYLLEGLLAKHPNMKIV--VIDEIERLAFRPNVSERAHYYAVIFLNQMKL 409 (988)
T ss_pred hhhhHHHHHHHHHhhCCcceee--hHHHHHHHHcccCccccceeehhhhhhhhHh
Confidence 9999999999999999987542 6778888876555433 4466777776643
No 242
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=46.52 E-value=1.3e+02 Score=33.10 Aligned_cols=94 Identities=14% Similarity=0.116 Sum_probs=71.9
Q ss_pred hHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC-------hhhhH-HHH
Q 002971 11 FTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-------VDKIT-EYL 82 (862)
Q Consensus 11 f~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~-------~~~~~-~~l 82 (862)
=-.+.|...-++-.++.=+-|-++-....++|...-++-.|.|=|++.||.|.-+||..+..+. ..|++ +..
T Consensus 10 e~~v~KAT~e~nT~enW~~IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F 89 (462)
T KOG2199|consen 10 EQDVEKATDEKNTSENWSLILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDF 89 (462)
T ss_pred HHHHHHhcCcccccccHHHHHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhH
Confidence 3445566666666677777788888889999999999999999999999999999998887542 12333 566
Q ss_pred HHHHHhhhC-CCChHHHHHHHHH
Q 002971 83 CDPLQRCLK-DDDPYVRKTAAIC 104 (862)
Q Consensus 83 ~~~v~~~l~-d~~~yVRk~A~~~ 104 (862)
...+++++. ..++-|+++-...
T Consensus 90 ~~el~al~~~~~h~kV~~k~~~l 112 (462)
T KOG2199|consen 90 TTELRALIESKAHPKVCEKMRDL 112 (462)
T ss_pred HHHHHHHHhhcccHHHHHHHHHH
Confidence 778888888 5788888775443
No 243
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=46.40 E-value=1.4e+02 Score=28.08 Aligned_cols=64 Identities=14% Similarity=0.227 Sum_probs=43.8
Q ss_pred HHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcC
Q 002971 86 LQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (862)
Q Consensus 86 v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 151 (862)
|.++..+..+----.+++-+.-+.+.+++...+ .+..|.+-|...||.|+..|+.+|..+.++-
T Consensus 10 i~kATs~~~~~~Dw~~~l~icD~i~~~~~~~ke--a~~~l~krl~~~~~~vq~~aL~lld~lvkNc 73 (140)
T PF00790_consen 10 IEKATSESLPSPDWSLILEICDLINSSPDGAKE--AARALRKRLKHGNPNVQLLALTLLDALVKNC 73 (140)
T ss_dssp HHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHH--HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcC
Confidence 444444433333446677777777777665543 6788888899999999999999988777763
No 244
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=46.31 E-value=79 Score=39.26 Aligned_cols=97 Identities=19% Similarity=0.225 Sum_probs=51.3
Q ss_pred HhHhccCC-CcchHHHHHHHHHHhcCCCCcHH-----HHHHHHHHhhcCCCCHHHHhHHHHHhcCCChh-----------
Q 002971 14 VVNCMQTE-NLELKKLVYLYLINYAKSQPDLA-----ILAVNTFVKDSQDPNPLIRALAVRTMGCIRVD----------- 76 (862)
Q Consensus 14 vv~l~~s~-~~~~Kkl~Yl~l~~~~~~~~el~-----~L~intl~kDl~~~n~~ir~lALr~l~~i~~~----------- 76 (862)
++..+.+. ..-+|..+.+.+..+....++-- .++.--+..-|.|+-|.||+.|+-+|+.+-..
T Consensus 604 Cle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~ 683 (1387)
T KOG1517|consen 604 CLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLV 683 (1387)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhh
Confidence 33444442 45566666666666666554421 22333345556667777777777666653221
Q ss_pred -----------hhHHHHHH----HHHhhhCCCChHHHHHHHHHHHHHHh
Q 002971 77 -----------KITEYLCD----PLQRCLKDDDPYVRKTAAICVAKLYD 110 (862)
Q Consensus 77 -----------~~~~~l~~----~v~~~l~d~~~yVRk~A~~~l~kl~~ 110 (862)
.-+|.++. .+...++|.+|.||+..+.++.++..
T Consensus 684 ~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~ 732 (1387)
T KOG1517|consen 684 VEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVV 732 (1387)
T ss_pred hhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 00222222 44455566666666666666665544
No 245
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=46.14 E-value=4.4e+02 Score=28.98 Aligned_cols=229 Identities=19% Similarity=0.198 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccc-------ccccchHHHHHHhhcC-CChhHHHHHHHHHHHHhh
Q 002971 78 ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL-------VEDRGFLESLKDLISD-NNPMVVANAVAALAEIEE 149 (862)
Q Consensus 78 ~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~-------~~~~~~~~~l~~lL~d-~d~~V~~~a~~~l~~i~~ 149 (862)
....+...+...|..-+--.||.++.....+.+..++. .-...+-+.+..|+.- .++-+..++=..|-|..+
T Consensus 73 ~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k 152 (335)
T PF08569_consen 73 YRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIK 152 (335)
T ss_dssp HHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTT
T ss_pred HHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHh
Q ss_pred cCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHH--------HHHHHHHHHhhcCCChHHHHHHHHH
Q 002971 150 NSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREA--------ENIVERVTPRLQHANCAVVLSAVKM 221 (862)
Q Consensus 150 ~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~--------~~il~~v~~~l~~~n~aV~~eai~~ 221 (862)
+..-..+-+..+.+.++.+.+...+=-...-.+..+..+-.....-. ..+......++.+.|......++++
T Consensus 153 ~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 153 HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Q ss_pred HHHhh----------hccCChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhChhhhhccceEEEecCCCcH
Q 002971 222 ILQQM----------ELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPI 290 (862)
Q Consensus 222 i~~~~----------~~~~~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~~~~~~~~~~~~l~~d~~ 290 (862)
+..++ .++++++-++.++ .|| +++.+||+-|...+...+.. .+.|.
T Consensus 233 L~ellldr~n~~vm~~yi~~~~nLkl~M--------~lL~d~sk~Iq~eAFhvFKvFVAN---------------p~K~~ 289 (335)
T PF08569_consen 233 LGELLLDRSNFNVMTRYISSPENLKLMM--------NLLRDKSKNIQFEAFHVFKVFVAN---------------PNKPP 289 (335)
T ss_dssp HHHHHHSGGGHHHHHHHTT-HHHHHHHH--------HHTT-S-HHHHHHHHHHHHHHHH----------------SS-BH
T ss_pred HHHHHHchhHHHHHHHHHCCHHHHHHHH--------HHhcCcchhhhHHHHHHHHHHHhC---------------CCCCh
Q ss_pred HHHHHHHHHHHHhcCcCcHHHHHHHHHHhhhhc--cHHHHHH---HHHHHHHH
Q 002971 291 YVKMEKLEIMIKLASDRNIDQVLLEFKEYATEV--DVDFVRK---AVRAIGRC 338 (862)
Q Consensus 291 ~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~--d~~~~~~---~i~~I~~l 338 (862)
.| .++|.+ |=+.++.-|..|..+. |.+|..+ +|+.|..+
T Consensus 290 ~I----~~iL~~-----Nr~kLl~fl~~f~~~~~~D~qf~~EK~~li~~i~~L 333 (335)
T PF08569_consen 290 PI----VDILIK-----NREKLLRFLKDFHTDRTDDEQFEDEKAYLIKQIESL 333 (335)
T ss_dssp HH----HHHHHH-----THHHHHHHHHTTTTT--S-CHHHHHHHHHHHHHHT-
T ss_pred HH----HHHHHH-----HHHHHHHHHHhCCCCCCccccHHHHHHHHHHHHHhC
No 246
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=45.66 E-value=61 Score=28.82 Aligned_cols=60 Identities=25% Similarity=0.354 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHhhhHhHHHH-----HHHHHHH--HhhhcchhHHHHHHHHHHHHHhCcccHHHH
Q 002971 327 FVRKAVRAIGRCAIKLERAAERC-----ISVLLEL--IKIKVNYVVQEAIIVIKDIFRRYPNTYESI 386 (862)
Q Consensus 327 ~~~~~i~~I~~la~k~~~~~~~~-----v~~ll~l--l~~~~~~v~~e~i~~l~~i~~~~p~~~~~~ 386 (862)
||+.+|+.||.++-+-+..-+.. +..++.. +....+|+.+-++..|++++..+++.|+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I 68 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFI 68 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 67788888888876654433322 3333333 223456888889999999999999877654
No 247
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=45.16 E-value=1.1e+02 Score=28.58 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcC
Q 002971 99 KTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (862)
Q Consensus 99 k~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 151 (862)
-.+.+.+.-+.+..++...+ .+..|.+-|..+||.|+..|+.+|..+.++-
T Consensus 18 ~~~il~icd~I~~~~~~~k~--a~raL~krl~~~n~~vql~AL~lLd~~vkNc 68 (133)
T cd03561 18 WALNLELCDLINLKPNGPKE--AARAIRKKIKYGNPHVQLLALTLLELLVKNC 68 (133)
T ss_pred HHHHHHHHHHHhCCCCCHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhC
Confidence 45566666666666554443 6788888899999999999999888777663
No 248
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=44.73 E-value=25 Score=39.48 Aligned_cols=129 Identities=19% Similarity=0.246 Sum_probs=83.0
Q ss_pred ccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHH-HHhhcCCCCHHHHhHHHHHhcCCC--hhhhH---------------
Q 002971 18 MQTENLELKKLVYLYLINYAKSQPDLAILAVNT-FVKDSQDPNPLIRALAVRTMGCIR--VDKIT--------------- 79 (862)
Q Consensus 18 ~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~int-l~kDl~~~n~~ir~lALr~l~~i~--~~~~~--------------- 79 (862)
....+--.||..|=|+..+....|++. +.+ +.--|+|+||--|++||..++.|- +..+.
T Consensus 21 ~~~~~~~~~~~~ygyw~~~~pd~~~~g---~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~ 97 (728)
T KOG4535|consen 21 LSTIKSIEKKVLYGYWSAFIPDTPELG---SPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFS 97 (728)
T ss_pred HHHHhhhhhhhhhceeeeecCCCCCCC---CceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchH
Confidence 344556789999999999988776632 222 123578999999999999988652 11111
Q ss_pred -------HHHHHHHHhhhC-CCChHHHHHHHHHHHHHHhhccc-cccc---cchHHHHHHhhcCCChhHHHHHHHHHHHH
Q 002971 80 -------EYLCDPLQRCLK-DDDPYVRKTAAICVAKLYDINAE-LVED---RGFLESLKDLISDNNPMVVANAVAALAEI 147 (862)
Q Consensus 80 -------~~l~~~v~~~l~-d~~~yVRk~A~~~l~kl~~~~p~-~~~~---~~~~~~l~~lL~d~d~~V~~~a~~~l~~i 147 (862)
..+...+.-.|. ..+|-|----+-|+..+.+..|- .++- .++...++.+++.+|+.|..+++.++.-|
T Consensus 98 v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~ 177 (728)
T KOG4535|consen 98 VMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAI 177 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHH
Confidence 111222222222 34444555566777777766552 1110 13678899999999999999999988776
Q ss_pred hh
Q 002971 148 EE 149 (862)
Q Consensus 148 ~~ 149 (862)
..
T Consensus 178 v~ 179 (728)
T KOG4535|consen 178 VS 179 (728)
T ss_pred Hh
Confidence 54
No 249
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=44.67 E-value=3e+02 Score=26.66 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=64.9
Q ss_pred HHHHHhhcCCC------hhHHHHHHHHHHHHhhcCCCCccc-ccHHHHHHHHHHhccC--ChhHHHHHHHHHhhcccccH
Q 002971 123 ESLKDLISDNN------PMVVANAVAALAEIEENSSRPIFE-ITSHTLSKLLTALNEC--TEWGQVFILDALSRYKAADA 193 (862)
Q Consensus 123 ~~l~~lL~d~d------~~V~~~a~~~l~~i~~~~~~~~~~-l~~~~~~~Ll~~l~~~--~~w~q~~iL~~L~~~~~~~~ 193 (862)
..|.+++.+.. ...++.++.++.++.+++ .-.|+ +....+.|+...++.. ++=.+-..|.+|......++
T Consensus 14 ~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~ 92 (160)
T PF11841_consen 14 TLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSP 92 (160)
T ss_pred HHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCH
Confidence 45555665543 356778899999999885 22355 3445567777766532 33344455666666655544
Q ss_pred HHHHHH-----HHHHHHhhcCCChHHHHHHHHHHHHhh
Q 002971 194 REAENI-----VERVTPRLQHANCAVVLSAVKMILQQM 226 (862)
Q Consensus 194 ~~~~~i-----l~~v~~~l~~~n~aV~~eai~~i~~~~ 226 (862)
.....+ ++.+...|+..+.-+...|+.++..++
T Consensus 93 ~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 93 KLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALF 130 (160)
T ss_pred HHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 322222 566778888888888888887777664
No 250
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=44.57 E-value=1.1e+02 Score=35.25 Aligned_cols=88 Identities=17% Similarity=0.227 Sum_probs=62.2
Q ss_pred CCHHHHhHHHHHhcCCC-hhhhHHHH-HHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChh
Q 002971 58 PNPLIRALAVRTMGCIR-VDKITEYL-CDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPM 135 (862)
Q Consensus 58 ~n~~ir~lALr~l~~i~-~~~~~~~l-~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~ 135 (862)
....+..+|+-..+-|. ..++-..+ ...+-..+.-.++.+||.--+|..-++-.+|+.- .++.|.+...|.|..
T Consensus 616 ~ea~ie~~a~Lg~AliamGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~SnPQm~----vfDtL~r~shd~dl~ 691 (881)
T COG5110 616 EEALIESLALLGCALIAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQMN----VFDTLERSSHDGDLN 691 (881)
T ss_pred hHHHHHHHHHhhhHHhhhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccCCCcchH----HHHHHHHhccccchh
Confidence 34566666665555544 23333222 2233333334899999999999999988888753 679999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 002971 136 VVANAVAALAEIEE 149 (862)
Q Consensus 136 V~~~a~~~l~~i~~ 149 (862)
|..+++.++.-+..
T Consensus 692 v~~ntIfamGLiGA 705 (881)
T COG5110 692 VIINTIFAMGLIGA 705 (881)
T ss_pred HHHHHHHHhhcccc
Confidence 99999998876643
No 251
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=44.49 E-value=1.3e+03 Score=33.75 Aligned_cols=51 Identities=22% Similarity=0.278 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhh
Q 002971 77 KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLI 129 (862)
Q Consensus 77 ~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL 129 (862)
..+..+..++..-+.++++.||+.+.-++..+.....-.+. ++.++++++|
T Consensus 1122 ~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~--~L~~p~K~~l 1172 (3550)
T KOG0889|consen 1122 KSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVV--KLLEPFKDVL 1172 (3550)
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHH--HHHHHHHHHH
Confidence 34456677888888999999999999999999887632232 3777777766
No 252
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.38 E-value=2.2e+02 Score=31.68 Aligned_cols=69 Identities=22% Similarity=0.272 Sum_probs=53.6
Q ss_pred HHHHhhhCCCChHHHHHHHHHHHHHHhhccccccc--cchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCC
Q 002971 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (862)
Q Consensus 84 ~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~ 152 (862)
.++..-+.|.+.-|||.|...+-.+...+|+.+.. ...++.+..+..|.+..|.....-++..+....+
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~ 131 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPAC 131 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcc
Confidence 34556678999999999999999999989987642 1345667778889999999888888877554443
No 253
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=43.73 E-value=87 Score=26.82 Aligned_cols=65 Identities=17% Similarity=0.285 Sum_probs=46.8
Q ss_pred HHHHHHHHhhhCC-CChHHHHHHHHHHHHHHhhccccccccchHHH---HHHhhcCCChhHHHHHHHHHH
Q 002971 80 EYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAELVEDRGFLES---LKDLISDNNPMVVANAVAALA 145 (862)
Q Consensus 80 ~~l~~~v~~~l~d-~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~---l~~lL~d~d~~V~~~a~~~l~ 145 (862)
..+..+....+.+ .+.-||...+.|+..+.....+.+. .||-.. +.....|.+..++..|.-.+.
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~-SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIK-SGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHH-hccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 4555666666544 7889999999999999998888776 478544 444556777777777765543
No 254
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=43.48 E-value=2.9e+02 Score=29.71 Aligned_cols=45 Identities=11% Similarity=0.133 Sum_probs=21.5
Q ss_pred cHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHH
Q 002971 289 PIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIG 336 (862)
Q Consensus 289 ~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~ 336 (862)
|+.+|...+-...+-.+++-++.+.+. |..+.+.+.+..++.++|
T Consensus 168 ~~dlr~~v~~~~~~~g~~~~~~~l~~~---~~~~~~~~~k~~~l~aLa 212 (324)
T PF11838_consen 168 PPDLRWAVYCAGVRNGDEEEWDFLWEL---YKNSTSPEEKRRLLSALA 212 (324)
T ss_dssp -HHHHHHHHHHHTTS--HHHHHHHHHH---HHTTSTHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhhHhhHHHHHHH---HhccCCHHHHHHHHHhhh
Confidence 455666655555544443333333332 334455666666666664
No 255
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=42.84 E-value=2.5e+02 Score=32.33 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=18.8
Q ss_pred HHHHHHHHhcCcCcHHHHHHHHHH
Q 002971 295 EKLEIMIKLASDRNIDQVLLEFKE 318 (862)
Q Consensus 295 ~~L~lL~~l~~~~Nv~~Iv~eL~~ 318 (862)
+.+.=|..=+|.+|+..|+.||.+
T Consensus 166 ksInglInkvn~sNi~~ii~eLfq 189 (739)
T KOG2140|consen 166 KSINGLINKVNASNIQEIIRELFQ 189 (739)
T ss_pred HHhHHHHhhhhHHHHHHHHHHHHH
Confidence 445556666899999999999974
No 256
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=42.53 E-value=2.2e+02 Score=27.01 Aligned_cols=65 Identities=12% Similarity=0.079 Sum_probs=41.5
Q ss_pred HHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCC
Q 002971 86 LQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR 153 (862)
Q Consensus 86 v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~ 153 (862)
|.++-.+...-.--...+-+.-+.+..+.-.. +.+..|++-|..+|+.|+.-|+.+|..+.++ |+
T Consensus 9 I~kATs~~l~~~dw~~ileicD~In~~~~~~k--~a~ral~krl~~~n~~vql~AL~LLe~~vkN-CG 73 (142)
T cd03569 9 IEKATSELLGEPDLASILEICDMIRSKDVQPK--YAMRALKKRLLSKNPNVQLYALLLLESCVKN-CG 73 (142)
T ss_pred HHHHcCcccCccCHHHHHHHHHHHhCCCCCHH--HHHHHHHHHHcCCChHHHHHHHHHHHHHHHH-CC
Confidence 33333333333334455566666665554333 3678888888999999999999988776665 44
No 257
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=42.51 E-value=2.7e+02 Score=30.75 Aligned_cols=143 Identities=15% Similarity=0.176 Sum_probs=79.6
Q ss_pred CCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCC---CcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcC------CCh
Q 002971 5 KDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQ---PDLAILAVNTFVKDSQDPNPLIRALAVRTMGC------IRV 75 (862)
Q Consensus 5 ~dvs~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~---~el~~L~intl~kDl~~~n~~ir~lALr~l~~------i~~ 75 (862)
++.-.+|-.|++.+-+++...++.++--+..-..-+ |-+...+...+..-+.. |-..-.-.+|.+.. +..
T Consensus 174 ~Elq~yf~~It~a~~~~~~~~r~~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~-nl~~L~~lm~~v~ALl~N~~l~l 252 (343)
T cd08050 174 KELQLYFEEITEALVGSNEEKRREALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQ-NLALLIYLMRMVRALLDNPNLHL 252 (343)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCCCCch
Confidence 344456778888777777666666554443322222 33445555555544442 32222222333332 223
Q ss_pred hhhHHHHHHHHHhhhC----------CCChHHHHHHHHHHHHHHhhccccccc--cchHHHHHHhhcC-CC-hhHHHHHH
Q 002971 76 DKITEYLCDPLQRCLK----------DDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISD-NN-PMVVANAV 141 (862)
Q Consensus 76 ~~~~~~l~~~v~~~l~----------d~~~yVRk~A~~~l~kl~~~~p~~~~~--~~~~~~l~~lL~d-~d-~~V~~~a~ 141 (862)
..-+..+++.+..|+. +.+..+|.-|+..+..+.+++...... ......+.+.|.| .. ....+.|+
T Consensus 253 e~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi 332 (343)
T cd08050 253 EPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAI 332 (343)
T ss_pred HHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHH
Confidence 3333456777777773 345799999999999999886654432 1244444444444 33 34477888
Q ss_pred HHHHHHh
Q 002971 142 AALAEIE 148 (862)
Q Consensus 142 ~~l~~i~ 148 (862)
..|..+.
T Consensus 333 ~GL~~lG 339 (343)
T cd08050 333 VGLSALG 339 (343)
T ss_pred HHHHHhC
Confidence 7777764
No 258
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=41.70 E-value=35 Score=23.83 Aligned_cols=28 Identities=32% Similarity=0.434 Sum_probs=18.1
Q ss_pred chHHHHHHhhcCCChhHHHHHHHHHHHH
Q 002971 120 GFLESLKDLISDNNPMVVANAVAALAEI 147 (862)
Q Consensus 120 ~~~~~l~~lL~d~d~~V~~~a~~~l~~i 147 (862)
+.++.|.++|...|+.++.+|+.+|..|
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4556666666666677777776666655
No 259
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=41.11 E-value=7.2e+02 Score=30.00 Aligned_cols=52 Identities=23% Similarity=0.213 Sum_probs=22.5
Q ss_pred cHHHHHHHHHHHHHhcCcCcHHHHHHHHHHh---hhhccHHHHHHHHHHHHHHHH
Q 002971 289 PIYVKMEKLEIMIKLASDRNIDQVLLEFKEY---ATEVDVDFVRKAVRAIGRCAI 340 (862)
Q Consensus 289 ~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y---~~~~d~~~~~~~i~~I~~la~ 340 (862)
+.++|.-.|..+-.++..--.-.+++++... ....|++++-..++....++.
T Consensus 442 ~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~ 496 (700)
T KOG2137|consen 442 NLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALAL 496 (700)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 3444444444444333221122344444332 334466666555555554443
No 260
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=40.71 E-value=60 Score=30.77 Aligned_cols=49 Identities=31% Similarity=0.499 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCC
Q 002971 79 TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDN 132 (862)
Q Consensus 79 ~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~ 132 (862)
.+.+...+.++|.+.++-|.|.|.-|++.. ++|.+.+ +-+.|..|++|.
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~~--k~~~l~p---Y~d~L~~Lldd~ 63 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLTW--KDPYLTP---YKDNLENLLDDK 63 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CcHHHHh---HHHHHHHHcCcc
Confidence 456777788999999999999999999863 3555544 668888888774
No 261
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=40.55 E-value=2.1e+02 Score=36.10 Aligned_cols=55 Identities=18% Similarity=0.343 Sum_probs=45.0
Q ss_pred CChhHHHHHHHHHHHHHhhChhhhh--ccceEEE-ecCCCcHHHHHHHHHHHHHhcCc
Q 002971 252 AEPEIQYVALRNINLIVQRRPTILA--HEIKVFF-CKYNDPIYVKMEKLEIMIKLASD 306 (862)
Q Consensus 252 ~~~~iry~aL~~l~~i~~~~p~~~~--~~~~~~~-~l~~d~~~Ik~~~L~lL~~l~~~ 306 (862)
-+|+||.+.+..|..=++.+|+.|- .+++.+- -+.|....||++.+.+|..|...
T Consensus 299 V~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 299 VDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK 356 (1048)
T ss_pred CchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999874 3566553 46666789999999999888654
No 262
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=40.04 E-value=49 Score=36.78 Aligned_cols=70 Identities=23% Similarity=0.246 Sum_probs=55.5
Q ss_pred HHHHHHHhhhCC-CChHHHHHHHHHHHHHHhhcccc---ccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhc
Q 002971 81 YLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (862)
Q Consensus 81 ~l~~~v~~~l~d-~~~yVRk~A~~~l~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 150 (862)
.+..-+.++|.. .+|.+---|+.=+....+.+|+- ++.-+--+++.+||+.+||.|..+|+.++..+.-+
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 445556667765 45999999999999999999974 33345567889999999999999999998876543
No 263
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.85 E-value=2.3e+02 Score=35.07 Aligned_cols=75 Identities=15% Similarity=0.167 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHhhhCCCChHHHHHHHHHHHHH---Hhhcccccc---ccchHHHHHHhhcCCChhHHHHHHHHHHHHhhc
Q 002971 77 KITEYLCDPLQRCLKDDDPYVRKTAAICVAKL---YDINAELVE---DRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (862)
Q Consensus 77 ~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl---~~~~p~~~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 150 (862)
+|+..+....+..|.|.+-.+|=+|..++.-. ...+++.+- +..| +.+...+.++||.++.-|+..+..++.+
T Consensus 799 ~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W-~~vie~~~~k~~L~v~~a~~~i~~m~~~ 877 (1014)
T KOG4524|consen 799 KIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTW-PSVIECLLCKDPLIVQRAFSCIEQMGKY 877 (1014)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhh-hHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 57788888889999999999999999888653 344565432 2234 6666777788999999999999999887
Q ss_pred CC
Q 002971 151 SS 152 (862)
Q Consensus 151 ~~ 152 (862)
.+
T Consensus 878 sg 879 (1014)
T KOG4524|consen 878 SG 879 (1014)
T ss_pred hh
Confidence 64
No 264
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=39.75 E-value=47 Score=23.14 Aligned_cols=28 Identities=32% Similarity=0.249 Sum_probs=23.1
Q ss_pred HHHHHHhhhCCCChHHHHHHHHHHHHHH
Q 002971 82 LCDPLQRCLKDDDPYVRKTAAICVAKLY 109 (862)
Q Consensus 82 l~~~v~~~l~d~~~yVRk~A~~~l~kl~ 109 (862)
.++.+.+++.+.++-+++.|+.++..+.
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4667788888889999999999988763
No 265
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=39.71 E-value=1.7e+02 Score=34.66 Aligned_cols=83 Identities=19% Similarity=0.257 Sum_probs=65.0
Q ss_pred HHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHH
Q 002971 60 PLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVAN 139 (862)
Q Consensus 60 ~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~ 139 (862)
+-+-|.||-+||-=...+|+ ...+-..+.-.+|.+||..=+|+.-++-.+|+.- ..+.|.+...|.|+.|..|
T Consensus 622 ~avLgiAliAMgeeig~eM~---lR~f~h~l~yge~~iRravPLal~llsvSNPq~~----vlDtLsk~shd~D~eva~n 694 (878)
T KOG2005|consen 622 LAVLGIALIAMGEEIGSEMV---LRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQVN----VLDTLSKFSHDGDLEVAMN 694 (878)
T ss_pred chhhhhhhhhhhhhhhhHHH---HHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcch----HHHHHHHhccCcchHHHHH
Confidence 55667777777754444443 3345566667899999999999999999999863 7799999999999999999
Q ss_pred HHHHHHHHhh
Q 002971 140 AVAALAEIEE 149 (862)
Q Consensus 140 a~~~l~~i~~ 149 (862)
|+.++--|..
T Consensus 695 aIfamGLiGA 704 (878)
T KOG2005|consen 695 AIFAMGLIGA 704 (878)
T ss_pred HHHHhccccC
Confidence 9999877754
No 266
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=38.69 E-value=1.5e+02 Score=31.82 Aligned_cols=39 Identities=21% Similarity=0.450 Sum_probs=31.0
Q ss_pred HHHHHHHhcccchhhccc-CChhHHHHHHHHHHHHHhhCh
Q 002971 234 VVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP 272 (862)
Q Consensus 234 ~~~~~~~~~~~~L~~lls-~~~~iry~aL~~l~~i~~~~p 272 (862)
.+.+....+.|+++.++. .++++|.-|++.+..+..+-|
T Consensus 112 ~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~ 151 (282)
T PF10521_consen 112 WISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVP 151 (282)
T ss_pred hHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCC
Confidence 345555568888889995 588999999999999998654
No 267
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=38.09 E-value=6.7e+02 Score=28.73 Aligned_cols=156 Identities=15% Similarity=0.229 Sum_probs=87.1
Q ss_pred cHHHHHHHHHHhcc----CChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhh----cC-CCh---HHHHHHHHHHHHhh
Q 002971 159 TSHTLSKLLTALNE----CTEWGQVFILDALSRYKAADAREAENIVERVTPRL----QH-ANC---AVVLSAVKMILQQM 226 (862)
Q Consensus 159 ~~~~~~~Ll~~l~~----~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l----~~-~n~---aV~~eai~~i~~~~ 226 (862)
....+.+|+..+.. -||++--.++|++..+...-..-+..+++.+...+ ++ +|+ --+||++.+++.+.
T Consensus 24 ~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~ 103 (435)
T PF03378_consen 24 AQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFV 103 (435)
T ss_dssp HHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhc
Confidence 34556666666643 37888777888887654332222333444433322 22 233 47899999998863
Q ss_pred hccCChHHHHHHHHhcccchhhcccCC-hhHHHHHHHHHHHHHhhCh-hhhhccce-EEEecCCCcHHHHHHHHHHHHHh
Q 002971 227 ELITSTDVVRNLCKKMAPPLVTLLSAE-PEIQYVALRNINLIVQRRP-TILAHEIK-VFFCKYNDPIYVKMEKLEIMIKL 303 (862)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~L~~lls~~-~~iry~aL~~l~~i~~~~p-~~~~~~~~-~~~~l~~d~~~Ik~~~L~lL~~l 303 (862)
.. .+++.+..+-..+.+++...|..| .|.-=-+++-+..++..+| .-+.+.+. .|-++.++. +-
T Consensus 104 ~~-~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~----------lW-- 170 (435)
T PF03378_consen 104 CE-ADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPA----------LW-- 170 (435)
T ss_dssp -G-GGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGG----------GG--
T ss_pred cC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcc----------hh--
Confidence 21 245655566667788888888655 4533345888888888887 33332222 222332221 11
Q ss_pred cCcCcHHHHHHHHHHhhhhccHHH
Q 002971 304 ASDRNIDQVLLEFKEYATEVDVDF 327 (862)
Q Consensus 304 ~~~~Nv~~Iv~eL~~y~~~~d~~~ 327 (862)
-...|+..+++-|..|++.....+
T Consensus 171 e~~gniPalvrLL~a~i~k~~~~i 194 (435)
T PF03378_consen 171 ERRGNIPALVRLLQAYIKKDPSFI 194 (435)
T ss_dssp GSTTTHHHHHHHHHHHHHHHGGG-
T ss_pred ccCCCcCcHHHHHHHHHHhCchhh
Confidence 256799999999988887655444
No 268
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.09 E-value=5.7e+02 Score=27.97 Aligned_cols=76 Identities=13% Similarity=0.135 Sum_probs=44.5
Q ss_pred HHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhh
Q 002971 50 TFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLI 129 (862)
Q Consensus 50 tl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL 129 (862)
.+.+-+.+ +--.++|-|+++.=... .+.++.. .++..+++.-|-+++..++.++-+.-|++..-. -...+.++|
T Consensus 81 ~ll~~l~d--~ck~~~A~r~la~~~ga--~~~~it~-~~la~~~~~~~l~ksL~al~~lt~~qpdl~da~-g~~vvv~lL 154 (461)
T KOG4199|consen 81 ELLEQLAD--ECKKSLAHRVLAGKNGA--HDALITL-LELAESPNESVLKKSLEAINSLTHKQPDLFDAE-AMAVVLKLL 154 (461)
T ss_pred HHHHHHHH--HHhhhHHHHHHhccCCC--cchhhhH-HHHhhCCchhHHHHHHHHHHHhhcCCcchhccc-cHHHHHHHH
Confidence 34444443 55667777777643221 1112222 224556777888888888888888888877643 345666666
Q ss_pred cC
Q 002971 130 SD 131 (862)
Q Consensus 130 ~d 131 (862)
.+
T Consensus 155 ~~ 156 (461)
T KOG4199|consen 155 AL 156 (461)
T ss_pred hc
Confidence 54
No 269
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.09 E-value=1.1e+02 Score=32.79 Aligned_cols=65 Identities=25% Similarity=0.321 Sum_probs=42.5
Q ss_pred HHHHhhhCCCChHHHHHHHHHHHHHHhhcccccc--ccchHHHHHHhhcCCChhHHHHHHHHHHHHhhc
Q 002971 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE--DRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (862)
Q Consensus 84 ~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~--~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 150 (862)
..+...+.+.+|-|||.|+.-+.-+---.-.... ....++.+.+|+.|.++ ...|+.++..+.++
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~ 72 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK 72 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh
Confidence 3578889999999999998665544322001110 12356778899999888 55666677776654
No 270
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=37.87 E-value=1.2e+02 Score=26.45 Aligned_cols=59 Identities=15% Similarity=0.082 Sum_probs=42.6
Q ss_pred CCCChHHHHHHHHHHHHHHhhccccccc--cchHHHHHHhhcC--CChhHHHHHHHHHHHHhh
Q 002971 91 KDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISD--NNPMVVANAVAALAEIEE 149 (862)
Q Consensus 91 ~d~~~yVRk~A~~~l~kl~~~~p~~~~~--~~~~~~l~~lL~d--~d~~V~~~a~~~l~~i~~ 149 (862)
.+.+..+|..|+..+..+.+.+.+.... ..+...+.+.+.| +.......|+..|.++..
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 3568899999999999999886544321 1355556666654 556788899999988854
No 271
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=36.87 E-value=3.2e+02 Score=24.75 Aligned_cols=108 Identities=19% Similarity=0.322 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHhhcC-CCCHHHHhHHHHHhcCCC-----hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhc--
Q 002971 41 PDLAILAVNTFVKDSQ-DPNPLIRALAVRTMGCIR-----VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN-- 112 (862)
Q Consensus 41 ~el~~L~intl~kDl~-~~n~~ir~lALr~l~~i~-----~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~-- 112 (862)
.+...-+..++.+-|. +..+..|..|.-.++.+. .+++++.++..|.+....... .|.|.+|+..+++..
T Consensus 1 E~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q~~ 78 (121)
T PF12397_consen 1 EDILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQEN 78 (121)
T ss_pred CcHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcccc
Q ss_pred cccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHh
Q 002971 113 AELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTAL 170 (862)
Q Consensus 113 p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l 170 (862)
.+.+++ ..++.++.-++ ....+.++.+... +.+++..+
T Consensus 79 ~~~lp~----~~~~~l~~~~~------l~~~L~~l~~~~~----------i~~fl~~l 116 (121)
T PF12397_consen 79 VDSLPR----KVFKALLKLPD------LIELLSELSEKYD----------IDKFLRAL 116 (121)
T ss_pred cccCCH----HHHHHHHcCcc------HHHHHHHHHhcCC----------HHHHHHHH
No 272
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=36.44 E-value=1.1e+03 Score=32.18 Aligned_cols=135 Identities=18% Similarity=0.282 Sum_probs=76.6
Q ss_pred cCCChHHHHHHHHHHHHhhh-ccCChHHH-HHHHHhcccchhhcc--cCChhHHHHHHHHHHHHHhhChhhh-hccceEE
Q 002971 208 QHANCAVVLSAVKMILQQME-LITSTDVV-RNLCKKMAPPLVTLL--SAEPEIQYVALRNINLIVQRRPTIL-AHEIKVF 282 (862)
Q Consensus 208 ~~~n~aV~~eai~~i~~~~~-~~~~~~~~-~~~~~~~~~~L~~ll--s~~~~iry~aL~~l~~i~~~~p~~~-~~~~~~~ 282 (862)
.|.|..|.+-|+..+-++.- .+..+++. -..-+.+..|+..++ +.+.++|-.+|+++..|+..+.+-+ +.+-.+|
T Consensus 1147 ~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF 1226 (1780)
T PLN03076 1147 CSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMF 1226 (1780)
T ss_pred CCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHH
Confidence 46677788878765543311 11122210 011223456666666 3567999999999999988765433 3333333
Q ss_pred Eec----CCCcHHHHHHHHHHHHHhcCc----------CcHHHHHHHHHHhhhhc-cHHHHHHHHHHHHHHHHhh
Q 002971 283 FCK----YNDPIYVKMEKLEIMIKLASD----------RNIDQVLLEFKEYATEV-DVDFVRKAVRAIGRCAIKL 342 (862)
Q Consensus 283 ~~l----~~d~~~Ik~~~L~lL~~l~~~----------~Nv~~Iv~eL~~y~~~~-d~~~~~~~i~~I~~la~k~ 342 (862)
.++ .++...+-+.+.+.+-.++++ +++...++-|.+|+... +.++.-.++.-+..|+.++
T Consensus 1227 ~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076 1227 MVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHH
Confidence 222 244577888888887765443 56677777777777532 3334334444444444433
No 273
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=36.41 E-value=3.5e+02 Score=30.88 Aligned_cols=162 Identities=16% Similarity=0.153 Sum_probs=84.0
Q ss_pred CCCChHHHHHHHHHHHHHHhhccc---------cccc--cchHHHHHHh-hcCCChhHHHHHHHHHHHHhhcCCCCcccc
Q 002971 91 KDDDPYVRKTAAICVAKLYDINAE---------LVED--RGFLESLKDL-ISDNNPMVVANAVAALAEIEENSSRPIFEI 158 (862)
Q Consensus 91 ~d~~~yVRk~A~~~l~kl~~~~p~---------~~~~--~~~~~~l~~l-L~d~d~~V~~~a~~~l~~i~~~~~~~~~~l 158 (862)
+|-..-||..|..|+..+.+.-|. .+++ ++=.+.|..+ |+|.++.+.+.|+-++..|...+.
T Consensus 6 r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk------ 79 (728)
T KOG4535|consen 6 RSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSK------ 79 (728)
T ss_pred hhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhH------
Confidence 345567899999998877654332 1121 1112334333 789999999999888888765431
Q ss_pred cHHHHHHHHHHh-ccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHH
Q 002971 159 TSHTLSKLLTAL-NECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRN 237 (862)
Q Consensus 159 ~~~~~~~Ll~~l-~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~ 237 (862)
..+..-+..- ..+.||.....-.++..| .++= .-+.....+-++-.+++|+-.+....+-..+--.
T Consensus 80 --~fls~a~~~~~~~ftpf~v~~a~si~~~~---------r~l~--~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~ 146 (728)
T KOG4535|consen 80 --QFLSVAEDTSDHAFTPFSVMIACSIRELH---------RCLL--LALVAESSSQTVTQIIKCLANLVSNAPYDRLKLS 146 (728)
T ss_pred --HHHHHHhccCCcCCCchHHHHHHHHHHHH---------HHHH--HHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHH
Confidence 1111111110 124566544333333222 1111 1112233455677777777665321111111111
Q ss_pred HHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhC
Q 002971 238 LCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRR 271 (862)
Q Consensus 238 ~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~ 271 (862)
+..+..+-+-.++ ++|++++..+|-.+..|+..+
T Consensus 147 ~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~ 181 (728)
T KOG4535|consen 147 LLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTH 181 (728)
T ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcC
Confidence 1222222222344 689999999999999998765
No 274
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=36.06 E-value=3.8e+02 Score=25.31 Aligned_cols=82 Identities=11% Similarity=0.054 Sum_probs=55.7
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---h----hhhH-HHHHHHHHhhhCC------C
Q 002971 28 LVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---V----DKIT-EYLCDPLQRCLKD------D 93 (862)
Q Consensus 28 l~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~---~----~~~~-~~l~~~v~~~l~d------~ 93 (862)
-+-+-++-....+++-+.-++-.|+|=++++||.+.-+||..|-.+. . .+++ ..+...+.+++.. .
T Consensus 20 ~~ileicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~ 99 (139)
T cd03567 20 EAIQAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRT 99 (139)
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCC
Confidence 34444555556677778889999999999999999888887664331 1 2333 3555667777753 5
Q ss_pred ChHHHHHHHHHHHHHH
Q 002971 94 DPYVRKTAAICVAKLY 109 (862)
Q Consensus 94 ~~yVRk~A~~~l~kl~ 109 (862)
++-||++.+..+..-.
T Consensus 100 ~~~Vk~kil~li~~W~ 115 (139)
T cd03567 100 SEKVKTKIIELLYSWT 115 (139)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 7888888776555433
No 275
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=35.88 E-value=38 Score=22.26 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=16.8
Q ss_pred HHHhHHHHHhcCCChhhhHHHHH
Q 002971 61 LIRALAVRTMGCIRVDKITEYLC 83 (862)
Q Consensus 61 ~ir~lALr~l~~i~~~~~~~~l~ 83 (862)
.+|..|..+|+.++.++-++.|.
T Consensus 2 ~vR~~aa~aLg~~~~~~a~~~L~ 24 (30)
T smart00567 2 LVRHEAAFALGQLGDEEAVPALI 24 (30)
T ss_pred HHHHHHHHHHHHcCCHhHHHHHH
Confidence 57778888888888776666543
No 276
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=34.95 E-value=2.2e+02 Score=27.63 Aligned_cols=49 Identities=12% Similarity=0.281 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhccccccccchHHHHHHh-hcCCChhHHHHHHHHHHHHhhcC
Q 002971 100 TAAICVAKLYDINAELVEDRGFLESLKDL-ISDNNPMVVANAVAALAEIEENS 151 (862)
Q Consensus 100 ~A~~~l~kl~~~~p~~~~~~~~~~~l~~l-L~d~d~~V~~~a~~~l~~i~~~~ 151 (862)
-+..=+.++|+.+++...+ .++.+.+- +...+. ....-+-+|.+|+...
T Consensus 37 LG~~IL~~~fk~h~~~r~~--Ile~l~~rI~~~s~~-~~~~~idlL~~lv~~~ 86 (158)
T PF14676_consen 37 LGIQILLELFKVHEMIRSE--ILEQLLNRIVTKSSS-PSSQYIDLLSELVRKA 86 (158)
T ss_dssp HHHHHHHHHHHH-GGGHHH--HHHHHHHHHHH--SS---HHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhHHHHHH--HHHHHHHHHHhcCcc-chhHHHHHHHHHHHHC
Confidence 4555567788888776653 55555443 334333 2233456666666554
No 277
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=34.39 E-value=9.4e+02 Score=29.38 Aligned_cols=71 Identities=18% Similarity=0.156 Sum_probs=57.0
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCC
Q 002971 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR 153 (862)
Q Consensus 81 ~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~ 153 (862)
..+..+..+..|+=+.||+.|+-.++-+..--||.-. .++-.+..-|.|.+--+.+.|..+|..+....|.
T Consensus 304 rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~--~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPn 374 (988)
T KOG2038|consen 304 RFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQEN--NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPN 374 (988)
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHH--HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCc
Confidence 3345555666688999999999999999988898654 3777778888899999999999999988766553
No 278
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=34.33 E-value=1e+03 Score=29.76 Aligned_cols=74 Identities=19% Similarity=0.220 Sum_probs=52.4
Q ss_pred cCCCcHHHHHHHHHHHHH--h-cCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhh-HhHHHHHHHHHHHHh
Q 002971 285 KYNDPIYVKMEKLEIMIK--L-ASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLE-RAAERCISVLLELIK 358 (862)
Q Consensus 285 l~~d~~~Ik~~~L~lL~~--l-~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~-~~~~~~v~~ll~ll~ 358 (862)
-.+|+..||+.-|.+-.+ + +++.=.+..+.-|.+=+...++..+.+....+-.|+.+|. ....|...-+...++
T Consensus 226 pk~D~~~I~reDL~~sLr~al~stP~Fa~~~lp~LlEKL~as~~~~K~DsL~~L~ec~~~ygv~~~~~~~~~lWsaik 303 (1030)
T KOG1967|consen 226 PKDDTITIRREDLKASLRSALVSTPSFAPFALPLLLEKLNASDPSAKVDSLDTLNECCLKYGVRRMLPAQKKLWSAIK 303 (1030)
T ss_pred CCCCcccccHHHHHHHHHHHHhcCccchhhHHHHHHHHhccccchhhhhHHHHHHHHHHHhCchhhhhhHHHHHHHHH
Confidence 457777788776654444 3 3444466677778888888888888899999999999987 445566666666555
No 279
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=34.15 E-value=6e+02 Score=28.04 Aligned_cols=60 Identities=10% Similarity=0.040 Sum_probs=37.2
Q ss_pred CCCHHHHhHHHHHhcCCC-hhhhHHHHHHHHHhhhCCCC--hHHHHHHHHHHHHHHhhccccc
Q 002971 57 DPNPLIRALAVRTMGCIR-VDKITEYLCDPLQRCLKDDD--PYVRKTAAICVAKLYDINAELV 116 (862)
Q Consensus 57 ~~n~~ir~lALr~l~~i~-~~~~~~~l~~~v~~~l~d~~--~yVRk~A~~~l~kl~~~~p~~~ 116 (862)
+.++.-|..||..|..=. ...++++++..|-..+.... ..-.-...+.+.+-.-.+|.+.
T Consensus 189 ~~~~~~r~~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~ 251 (343)
T cd08050 189 GSNEEKRREALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLH 251 (343)
T ss_pred CCCHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 478999999999998743 56666776666665555422 1223344455555455677664
No 280
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=33.61 E-value=6.3e+02 Score=29.00 Aligned_cols=62 Identities=18% Similarity=0.285 Sum_probs=39.6
Q ss_pred cCCChHHHHHHHHHHHHhhhccCChHHHHHHHHh--cccchhhccc-C-----ChhHHHHHHHHHHHHHhhCh
Q 002971 208 QHANCAVVLSAVKMILQQMELITSTDVVRNLCKK--MAPPLVTLLS-A-----EPEIQYVALRNINLIVQRRP 272 (862)
Q Consensus 208 ~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~--~~~~L~~lls-~-----~~~iry~aL~~l~~i~~~~p 272 (862)
...+..|..||.||+.+.+ ..++.+.+ .+.. ....++..|+ . ++++.|+.+|-+-.+....+
T Consensus 42 ~~~~~~v~~EALKCL~N~l--f~s~~aR~-~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~ 111 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNAL--FLSPSARQ-IFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRP 111 (446)
T ss_pred cCCChHHHHHHHHHHHHHH--hCCHHHHH-HHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCh
Confidence 3445789999999999874 34555543 3222 2233444452 2 57899999998887776544
No 281
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=33.37 E-value=49 Score=28.60 Aligned_cols=55 Identities=15% Similarity=0.246 Sum_probs=36.2
Q ss_pred CCeeEEEEEEEecCCCCcccceeeecccccCcccCCCCCCCcCCCCCeeeEEEeeeec
Q 002971 657 DGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLF 714 (862)
Q Consensus 657 ~~~~~l~l~~~N~s~~~it~f~~q~~~n~~gl~~~~~~~~~~l~pg~~~~~~i~i~~~ 714 (862)
|....+.+++.|.......++.+++..+.... ....++.|+||++..+.+.+...
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLDGNSV---STVTIPSLAPGESETVTFTWTPP 72 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEETTEEE---EEEEESEB-TTEEEEEEEEEE-S
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEECCcee---ccEEECCcCCCcEEEEEEEEEeC
Confidence 45678899999998888899998875432111 22345789999988887776655
No 282
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=33.18 E-value=2.5e+02 Score=26.18 Aligned_cols=49 Identities=20% Similarity=0.256 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhc
Q 002971 100 TAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (862)
Q Consensus 100 ~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 150 (862)
..++.+.-+.+..++...+ .+..|.+-|..+||.|+.-|+.+|..+.++
T Consensus 19 ~~~l~icD~i~~~~~~~k~--a~r~l~krl~~~n~~v~l~AL~lLe~~vkN 67 (133)
T smart00288 19 ELILEICDLINSTPDGPKD--AVRLLKKRLNNKNPHVALLALTLLDACVKN 67 (133)
T ss_pred HHHHHHHHHHhCCCccHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4455566666666544443 677888888899999999999988777666
No 283
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=32.67 E-value=9.7e+02 Score=29.01 Aligned_cols=82 Identities=12% Similarity=0.175 Sum_probs=49.1
Q ss_pred HHHHHHhhcccccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcccCCCChH-HHHHHH
Q 002971 405 SMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPD-LRDRAY 483 (862)
Q Consensus 405 ~~~wilGEy~~~i~~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~~~~~~~~~i~~~l~~~~~~s~~~d-vrdRA~ 483 (862)
+.+|.+|=+...+ .-|+|+.|..++..-+.+.-+.|+..+.+...+..+-.+++++..+...+.. -.++ .+-|++
T Consensus 432 ~ylynF~ivs~~L--iydiI~kl~~~l~e~~ve~ll~ii~~~G~~LRkDDp~alk~~i~eiq~~a~~--a~~s~~~pR~r 507 (822)
T KOG2141|consen 432 SYLYNFGIVSCSL--IYDIIRKLAENLNETNVEALLTIIANCGFSLRKDDPLALKDIITEIQSKAAS--AKISAISPRLR 507 (822)
T ss_pred HHHHHhhcccHHH--HHHHHHHHHhchhhhhHHHHHHHHHHccchhcCCChHHHHHHHHHHHHHhhc--CCccccchHHH
Confidence 3445566554432 4588899998888777776555555555544433222267778777776532 2233 477888
Q ss_pred HHHHHhc
Q 002971 484 IYWRLLS 490 (862)
Q Consensus 484 ~y~~ll~ 490 (862)
|...-++
T Consensus 508 Fmleti~ 514 (822)
T KOG2141|consen 508 FMLETIS 514 (822)
T ss_pred HHHHHHH
Confidence 7765544
No 284
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.52 E-value=2.9e+02 Score=33.25 Aligned_cols=67 Identities=13% Similarity=0.141 Sum_probs=44.7
Q ss_pred HHHhhhHhHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCcccHHHHHHHHHHhhccCCchHHHH
Q 002971 338 CAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKA 404 (862)
Q Consensus 338 la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~~~ 404 (862)
+..+|.++.+|+++++..+...-...-.+-....+..++..||+.....+..+...=.++...+.+.
T Consensus 576 ~f~~~~~~~~~~~~~~~~l~el~~~~d~d~~~~~~~~l~~~YpD~~~~~l~~il~~R~dls~~~~k~ 642 (667)
T KOG2286|consen 576 FFRKYGSDVDTLISTISTLAELISLQDPDLIKLEVSTLLECYPDIPKDHLEAILKIRGDLSRSEKKK 642 (667)
T ss_pred HHHHhCcchhhhhhhhHHHHHHHhcCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhcCCCHHHHHH
Confidence 3344555788888887776554333222333446677888899999988888887667777666654
No 285
>PF13981 SopA: SopA-like central domain; PDB: 3NB2_B 3NAW_B 3SQV_B 2QZA_B 3SY2_B 2QYU_A.
Probab=32.29 E-value=1.4e+02 Score=28.14 Aligned_cols=52 Identities=13% Similarity=0.289 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCh----HHHHHHHHHhcccCCCChHHHHHHHHHHHHh
Q 002971 435 PAQVQLQLLTATVKLFLKKPTEGP----QQMIQVVLNNATVETDNPDLRDRAYIYWRLL 489 (862)
Q Consensus 435 ~~~v~~~iLta~~Kl~~~~~~~~~----~~~i~~~l~~~~~~s~~~dvrdRA~~y~~ll 489 (862)
.......+|..+.+.|.+.|+- + .--+|.+.+ |.. +.|+++++.|...+.--
T Consensus 66 ~~~~~~~~l~~~i~~F~r~pel-m~~~N~~FIQ~i~~-~~~-~~~~~~k~~A~~LY~~Y 121 (135)
T PF13981_consen 66 KDKLNQAILNFFIDRFSRQPEL-MISNNGAFIQLIAQ-AMT-HGDDEIKQKARDLYKKY 121 (135)
T ss_dssp -HHHHHHCHHHHHHHHHHTTTH-HHHTHHHHHHHHHH-HCC--TSCCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHhCHhH-HHHcccHHHHHHHH-HHH-hccHHHHHHHHHHHHHH
Confidence 3445568999999999999973 2 223444444 554 34889999998766543
No 286
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=31.74 E-value=1.1e+03 Score=33.05 Aligned_cols=267 Identities=18% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHhcCCC--hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccc--------c--ccccchHHHHHHh-hcC
Q 002971 65 LAVRTMGCIR--VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE--------L--VEDRGFLESLKDL-ISD 131 (862)
Q Consensus 65 lALr~l~~i~--~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~--------~--~~~~~~~~~l~~l-L~d 131 (862)
+|+++++++. .......+-..+...+.+.++-+||.|++++..+++..+. + +.. ....+..+ +.|
T Consensus 463 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~--vl~~ll~~aia~ 540 (2341)
T KOG0891|consen 463 LAFKTLGGFKFSGYSLTLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKE--VLSALLTVAIAD 540 (2341)
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHH--HHHHHHHHhccC
Q ss_pred CChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccH----HHHHHHHHHHHHhh
Q 002971 132 NNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADA----REAENIVERVTPRL 207 (862)
Q Consensus 132 ~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~----~~~~~il~~v~~~l 207 (862)
.||.++...+..+. .+-...-.-+..++.++..+.+..=-.|......+.+..-.++ .......-....-+
T Consensus 541 ~~~~i~~~v~~~l~-----~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l 615 (2341)
T KOG0891|consen 541 TDPDIRIRVLSSLN-----ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTEL 615 (2341)
T ss_pred CCcchhhhHHhhhc-----cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchh
Q ss_pred cCCChHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhChhhhhccceEEEecC
Q 002971 208 QHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKY 286 (862)
Q Consensus 208 ~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~~~~~~~~~~~~l~ 286 (862)
..++.++.-+-.-.-++.+ ....+..++....++...+...+ ..++...-.++.++..|++..........+..+++.
T Consensus 616 ~~sg~~r~~~~~a~~~~~~-i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~ 694 (2341)
T KOG0891|consen 616 EFSGMARTKEESAKLLCEL-IISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLI 694 (2341)
T ss_pred hhcchHHhHHHHHHHhhHH-HHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHH
Q ss_pred CCcHH------HHHHHHHHHHHhcCcCcH--------HHHHHHHHHhh-hhccHHHHHHHHHHHHHHH
Q 002971 287 NDPIY------VKMEKLEIMIKLASDRNI--------DQVLLEFKEYA-TEVDVDFVRKAVRAIGRCA 339 (862)
Q Consensus 287 ~d~~~------Ik~~~L~lL~~l~~~~Nv--------~~Iv~eL~~y~-~~~d~~~~~~~i~~I~~la 339 (862)
.+... .|+-++..+.+++..+-+ ..+++-|...+ +.....+++.+++.+|.++
T Consensus 695 ~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g 762 (2341)
T KOG0891|consen 695 IKMLQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLG 762 (2341)
T ss_pred HHHHHHhhhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhc
No 287
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=31.37 E-value=7.3e+02 Score=27.15 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhhhccCChHHHHHHHHh--cccchhhccc-CChhHHHHHHHHHHHHH
Q 002971 213 AVVLSAVKMILQQMELITSTDVVRNLCKK--MAPPLVTLLS-AEPEIQYVALRNINLIV 268 (862)
Q Consensus 213 aV~~eai~~i~~~~~~~~~~~~~~~~~~~--~~~~L~~lls-~~~~iry~aL~~l~~i~ 268 (862)
.|....++.++.++.. .++...+.+..+ ....+.+-|. .++++--.+|..+..=+
T Consensus 129 siR~~fI~F~Lsfl~~-~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~V 186 (330)
T PF11707_consen 129 SIRTNFIRFWLSFLSS-GDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKV 186 (330)
T ss_pred CHHHHHHHHHHHHHcc-CCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHh
Confidence 7788888888877643 355555554321 1223344443 44566666777776433
No 288
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=31.02 E-value=92 Score=22.95 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=26.7
Q ss_pred EEEEecCCCCcccceeeecccccCcccCCCCCCCcCCCCCeeeEEE
Q 002971 664 MLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLL 709 (862)
Q Consensus 664 l~~~N~s~~~it~f~~q~~~n~~gl~~~~~~~~~~l~pg~~~~~~i 709 (862)
|.|+|.++.++.--.++-.. |=.... ..-..|+||++....+
T Consensus 2 F~~~N~g~~~L~I~~v~tsC---gCt~~~-~~~~~i~PGes~~i~v 43 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQTSC---GCTTAE-YSKKPIAPGESGKIKV 43 (45)
T ss_pred EEEEECCCCcEEEEEeeEcc---CCEEee-CCcceECCCCEEEEEE
Confidence 68999999988776665432 221111 1224789999877655
No 289
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=30.53 E-value=5e+02 Score=32.97 Aligned_cols=108 Identities=21% Similarity=0.269 Sum_probs=75.7
Q ss_pred CCcHHHHHHHHHHhhc-----CCCCHHHHhHHHHHhcCCC--hhhhH--HHHHHHHHhhhCCCChHHHHHHHHHHHHHHh
Q 002971 40 QPDLAILAVNTFVKDS-----QDPNPLIRALAVRTMGCIR--VDKIT--EYLCDPLQRCLKDDDPYVRKTAAICVAKLYD 110 (862)
Q Consensus 40 ~~el~~L~intl~kDl-----~~~n~~ir~lALr~l~~i~--~~~~~--~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~ 110 (862)
+.|...-++|.+-+-+ .|-.|.||+--+..||.-. -|+.. ...+..+-=.|.|.+.-||++.+-++.++|.
T Consensus 276 ~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e 355 (1048)
T KOG2011|consen 276 QQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYE 355 (1048)
T ss_pred HHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHh
Confidence 3444444555555544 6788999999999998532 23332 4556677788999999999999999999999
Q ss_pred hcccc--ccc--cchHHHHHHhh-cCCChhHHHHHHHHHHHH
Q 002971 111 INAEL--VED--RGFLESLKDLI-SDNNPMVVANAVAALAEI 147 (862)
Q Consensus 111 ~~p~~--~~~--~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i 147 (862)
++-.. ++. ..|-++|.++. .|.|++|.+.++..+...
T Consensus 356 ~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~ 397 (1048)
T KOG2011|consen 356 KDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLL 397 (1048)
T ss_pred ccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence 84322 110 24777888887 577888887776666554
No 290
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=30.41 E-value=8e+02 Score=27.35 Aligned_cols=112 Identities=10% Similarity=0.119 Sum_probs=59.5
Q ss_pred CChhHHHHHHHHHHHHHhhChhhhhccce----E-EEecCCCcHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhhhhccHH
Q 002971 252 AEPEIQYVALRNINLIVQRRPTILAHEIK----V-FFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVD 326 (862)
Q Consensus 252 ~~~~iry~aL~~l~~i~~~~p~~~~~~~~----~-~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~ 326 (862)
...++-+-.|..+.+++..+|..+..|.. . |..+-+-...||.+++.++..+.- .-..+..
T Consensus 146 ~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~--------------~l~~~~~ 211 (372)
T PF12231_consen 146 PSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKK--------------CLGPNKE 211 (372)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH--------------HhChhHH
Confidence 35678888999999999999988766543 1 222223344456656555544321 0001111
Q ss_pred HHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhcch-hHHHHHHHHHHHHHh
Q 002971 327 FVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNY-VVQEAIIVIKDIFRR 378 (862)
Q Consensus 327 ~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~-v~~e~i~~l~~i~~~ 378 (862)
+.+.+ ..+-.....-.+..+.+.+.|.+++..++++ ..-++|..+..+++.
T Consensus 212 ~s~~~-~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~ 263 (372)
T PF12231_consen 212 LSKSV-LEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGS 263 (372)
T ss_pred HHHHH-HHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCC
Confidence 11111 1110000000023556777777888774433 456788888877754
No 291
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=30.07 E-value=8.9e+02 Score=27.75 Aligned_cols=172 Identities=15% Similarity=0.241 Sum_probs=88.6
Q ss_pred HHHHHhhcCCCCHHHHhHHHHHhcCCCh------hhhHHHHHHHHHhhhCC-CChHHHHHHHHHHHHHHhh----ccccc
Q 002971 48 VNTFVKDSQDPNPLIRALAVRTMGCIRV------DKITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDI----NAELV 116 (862)
Q Consensus 48 intl~kDl~~~n~~ir~lALr~l~~i~~------~~~~~~l~~~v~~~l~d-~~~yVRk~A~~~l~kl~~~----~p~~~ 116 (862)
...+.++-.-.|+++--.-.|.++.++. ..+++.+...+....+. ++|.-=--...++.-+.+. +|+.+
T Consensus 32 f~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v 111 (435)
T PF03378_consen 32 FALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAV 111 (435)
T ss_dssp HHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH--
T ss_pred HHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHH
Confidence 3344555557899998888999887662 34445555555555554 6665555555555555543 45533
Q ss_pred c--ccchHHHHHHhhcCCChhH---HHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHH----HHHHHHHhh
Q 002971 117 E--DRGFLESLKDLISDNNPMV---VANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQ----VFILDALSR 187 (862)
Q Consensus 117 ~--~~~~~~~l~~lL~d~d~~V---~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q----~~iL~~L~~ 187 (862)
. +..+.+.+...|..+=.-. +...++.+.|..+. ... ++.+..|+..|-.+.-|-. --+.|+|+.
T Consensus 112 ~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~--~~~----p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a 185 (435)
T PF03378_consen 112 SQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPS--SPL----PDAYKQLFPPLLSPALWERRGNIPALVRLLQA 185 (435)
T ss_dssp -HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS----S------TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCC----cHHHHHHHHHHcCcchhccCCCcCcHHHHHHH
Confidence 2 1246677777776432222 23445555565541 111 1223344444445566742 346677776
Q ss_pred cccccHHH------HHHHHHHHHHhhcCC-ChHHHHHHHHHHHHh
Q 002971 188 YKAADARE------AENIVERVTPRLQHA-NCAVVLSAVKMILQQ 225 (862)
Q Consensus 188 ~~~~~~~~------~~~il~~v~~~l~~~-n~aV~~eai~~i~~~ 225 (862)
|...++.. .+.++.....++.+. +..--|+-...++..
T Consensus 186 ~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~gF~LL~~iv~~ 230 (435)
T PF03378_consen 186 YIKKDPSFIVANNQLEPILGVFQKLIASKANDHYGFDLLESIVEN 230 (435)
T ss_dssp HHHHHGGG----S-CHHHHHHHHHHHT-TTCHHHHHHHHHHHHHH
T ss_pred HHHhCchhhcchhhHHHHHHHHHHHHCCCCcchHHHHHHHHHHHH
Confidence 66554332 235566666666654 445556666666654
No 292
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=29.68 E-value=3.3e+02 Score=24.40 Aligned_cols=52 Identities=13% Similarity=0.082 Sum_probs=34.1
Q ss_pred CcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCC
Q 002971 22 NLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI 73 (862)
Q Consensus 22 ~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i 73 (862)
......-..+.++.+...+++-+--++..|.|=|+++|+.+.-.||..|=.+
T Consensus 13 ~~~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~l 64 (115)
T cd00197 13 NMGPDWPLIMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYC 64 (115)
T ss_pred CCCCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 3344444445555555555666667788888888888888887777766543
No 293
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=29.39 E-value=45 Score=29.73 Aligned_cols=60 Identities=18% Similarity=0.191 Sum_probs=38.0
Q ss_pred CCeeEEEEEEEecCCCCcccceeeeccc---ccCccc---CCCCCCCcCCCCCeeeEEEeeeecCC
Q 002971 657 DGQVFYSMLFENNTQTPLDGFMIQFNKN---TFGLAA---GGALQVPQLQPGTSGRTLLPMVLFQN 716 (862)
Q Consensus 657 ~~~~~l~l~~~N~s~~~it~f~~q~~~n---~~gl~~---~~~~~~~~l~pg~~~~~~i~i~~~~~ 716 (862)
|.-+.+.+.|+|.++.++.++.+.+... .-|+.. ........|+||+..+..+.+...+.
T Consensus 14 G~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~~y 79 (107)
T PF00927_consen 14 GQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITPSQY 79 (107)
T ss_dssp TSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HHSH
T ss_pred CCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEceeE
Confidence 4567899999999999999866654210 115532 11123458999999999998877765
No 294
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=29.31 E-value=9.8e+02 Score=28.44 Aligned_cols=96 Identities=13% Similarity=0.130 Sum_probs=59.4
Q ss_pred cCcCcHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhcchhH--------------HHH
Q 002971 304 ASDRNIDQVLLEFKEYAT-EVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVV--------------QEA 368 (862)
Q Consensus 304 ~~~~Nv~~Iv~eL~~y~~-~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~--------------~e~ 368 (862)
.+.+ .+.+|+.++.+-= ..+.++++..+.=++.++...+.....|++.|++.+.-...... +.+
T Consensus 67 Ld~~-~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~~~yl~~vl~~LV~~f~p~~~~~~~~~~~~~~~~~~~~~~v 145 (563)
T PF05327_consen 67 LDSS-CKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQPKYLSPVLSMLVKNFIPPPSSIAEWPGCPPEKRREIYERV 145 (563)
T ss_dssp G-SC-CHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH-GGGHHHHHHHHHHGGGS-HHHHHH---------------H
T ss_pred hhhH-HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccCCCccccccchhhhhhhhhhHHHH
Confidence 3444 7788888876521 46788888888888888887787888888888877654432211 123
Q ss_pred HHHHHHHHHhCcccHHHHHHHHHHhhccCCch
Q 002971 369 IIVIKDIFRRYPNTYESIIATLCESLDTLDEP 400 (862)
Q Consensus 369 i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~ 400 (862)
-..++.|++-.|.....+...+.+.+.....+
T Consensus 146 H~~L~~Il~lvP~s~~~L~~~l~~~FP~~~~~ 177 (563)
T PF05327_consen 146 HDALQKILRLVPTSPSFLIPILVQNFPHKRKS 177 (563)
T ss_dssp HHHHHHHHHH-GGGHHHHHHHHHHTS--TTS-
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCcCCCCC
Confidence 44678888888887777777777666544433
No 295
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.06 E-value=9.2e+02 Score=28.81 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=30.8
Q ss_pred HhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHh
Q 002971 69 TMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYD 110 (862)
Q Consensus 69 ~l~~i~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~ 110 (862)
+.+-+..|+=--..+..|...+.+.+|-+||-|.+++..+|+
T Consensus 198 ~s~llenPE~N~~~L~~l~eml~s~n~~~~Kl~~lSLlaVFK 239 (704)
T KOG2153|consen 198 CSKLLENPEENLKKLKELFEMLDSQNPKAKKLALLSLLAVFK 239 (704)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Confidence 333344555444556777888888888999999999999886
No 296
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=28.91 E-value=1.2e+02 Score=26.89 Aligned_cols=50 Identities=12% Similarity=0.185 Sum_probs=40.2
Q ss_pred hHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHH
Q 002971 78 ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKD 127 (862)
Q Consensus 78 ~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~ 127 (862)
.++.++..+..+++|-+|.||.-|..-+--+.+.+|+.+-...|...+..
T Consensus 8 ~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~ 57 (102)
T PF12333_consen 8 FFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPN 57 (102)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHH
Confidence 45677888999999999999999999999999999998332356665543
No 297
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=28.21 E-value=7.4e+02 Score=26.23 Aligned_cols=100 Identities=19% Similarity=0.281 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHhh--Chhhhhcc---ceEEEecCCCcHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhhhhccHHHHH
Q 002971 255 EIQYVALRNINLIVQR--RPTILAHE---IKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVR 329 (862)
Q Consensus 255 ~iry~aL~~l~~i~~~--~p~~~~~~---~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~ 329 (862)
++|+.+|+.+....-. .++-+... ++.+.--+.+++.+...+++++.+..+.+-+..++.++..-+.-.+..| .
T Consensus 81 elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~-~ 159 (278)
T PF08631_consen 81 ELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNF-D 159 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchH-H
Confidence 6888888777665432 22222211 1222233456678888999999996666666666666655443233333 3
Q ss_pred HHHHHHHHHHHhhhHhHHHHHHHHHH
Q 002971 330 KAVRAIGRCAIKLERAAERCISVLLE 355 (862)
Q Consensus 330 ~~i~~I~~la~k~~~~~~~~v~~ll~ 355 (862)
.++..|..++.+-++.+-.+++.++.
T Consensus 160 ~~l~~i~~l~~~~~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 160 SILHHIKQLAEKSPELAAFCLDYLLL 185 (278)
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 45666667777766666666655443
No 298
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=28.20 E-value=1.3e+03 Score=29.23 Aligned_cols=80 Identities=16% Similarity=0.284 Sum_probs=54.4
Q ss_pred HHHHHHHHhhcccc--cC--CHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCC--ChHHHHHHHHHhcccCCCCh
Q 002971 403 KASMIWIIGEYAER--ID--NADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTE--GPQQMIQVVLNNATVETDNP 476 (862)
Q Consensus 403 ~~~~~wilGEy~~~--i~--~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~~~~--~~~~~i~~~l~~~~~~s~~~ 476 (862)
+-.++-.|||-+.. ++ ..-..++.++..|...+-++-+.+|..+.+++.+.|+- .++.++..+...+ .....
T Consensus 522 k~~~VrfIsEL~KF~lv~~~~if~cLk~ll~dF~~hnIEm~c~lLE~~GrfLlr~pEt~lrM~~~Le~i~rkK--~a~~l 599 (1128)
T KOG2051|consen 522 KLKIVRFISELCKFQLVPKFEIFSCLKMLLNDFTHHNIEMACVLLESCGRFLLRSPETKLRMRVFLEQIKRKK--RASAL 599 (1128)
T ss_pred hhhhhhhHHhhhhhCccChHHHHHHHHHHHHhcccccHHHHHHHHHhcchhhhcChhHHHHHHHHHHHHHHHH--HHhhh
Confidence 44567788987654 22 13467888999999999999999999999999999973 1334444444332 23445
Q ss_pred HHHHHHHH
Q 002971 477 DLRDRAYI 484 (862)
Q Consensus 477 dvrdRA~~ 484 (862)
|=|+-+..
T Consensus 600 Dsr~~~~i 607 (1128)
T KOG2051|consen 600 DSRQATLI 607 (1128)
T ss_pred chHHHHHH
Confidence 55555444
No 299
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=28.17 E-value=5.7e+02 Score=24.95 Aligned_cols=48 Identities=17% Similarity=0.184 Sum_probs=32.6
Q ss_pred HHHhcCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhHhHHHH
Q 002971 300 MIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERC 349 (862)
Q Consensus 300 L~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~ 349 (862)
+-++ +++|++.++.+|.+...+ +++.+..+++.|-..+...+....-|
T Consensus 8 lnkL-s~~n~~~~~~~l~~~~~~-~~~~~~~l~~~i~~~~~~~~~~~~~y 55 (200)
T smart00543 8 INKL-SPSNFESIIKELLKLNNS-DKNLRKYILELIFEKAVEEPNFIPAY 55 (200)
T ss_pred HhhC-CHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHcCcchHHHH
Confidence 3344 478999999999876544 35677888888877776555433333
No 300
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=27.57 E-value=2.1e+02 Score=34.72 Aligned_cols=101 Identities=18% Similarity=0.140 Sum_probs=63.7
Q ss_pred HHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccc---cccchH
Q 002971 46 LAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELV---EDRGFL 122 (862)
Q Consensus 46 L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~---~~~~~~ 122 (862)
..+|.+..=--+.+.. .|+..|++++.|. -..+...+-..+..+ --|..|+.-+..+.+..|--+ .+..++
T Consensus 39 ~l~~~l~~y~~~t~s~---~~~~il~~~~~P~-~K~~~~~l~~~~~~~--~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf 112 (668)
T PF04388_consen 39 WLVNGLVDYYLSTNSQ---RALEILVGVQEPH-DKHLFDKLNDYFVKP--SYRLQALTLLGHFVRSQPPWLYKILQTPLF 112 (668)
T ss_pred HHHHHHHHHHhhcCcH---HHHHHHHhcCCcc-HHHHHHHHHHHHcCc--hhHHHHHHHHHHHHhcCCchHHHHhcChhH
Confidence 3466665443333332 2677788888661 112333344455543 458888888889999887533 223455
Q ss_pred HHHHH-hhcCCChhHHHHHHHHHHHHhhcCC
Q 002971 123 ESLKD-LISDNNPMVVANAVAALAEIEENSS 152 (862)
Q Consensus 123 ~~l~~-lL~d~d~~V~~~a~~~l~~i~~~~~ 152 (862)
+.|.+ |..|.+..|+..|+.+|.-+.++-|
T Consensus 113 ~~LLk~L~~D~~~~~~~~al~~LimlLP~ip 143 (668)
T PF04388_consen 113 KSLLKCLQFDTSITVVSSALLVLIMLLPHIP 143 (668)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHhcccc
Confidence 55544 4569999999999999988877654
No 301
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=27.33 E-value=1.5e+02 Score=26.14 Aligned_cols=48 Identities=17% Similarity=0.304 Sum_probs=28.4
Q ss_pred CeeEEEEEEEecCCCCcccceeeeccc-ccCcccCCCCCCCcCCCCCeeeEEEe
Q 002971 658 GQVFYSMLFENNTQTPLDGFMIQFNKN-TFGLAAGGALQVPQLQPGTSGRTLLP 710 (862)
Q Consensus 658 ~~~~l~l~~~N~s~~~it~f~~q~~~n-~~gl~~~~~~~~~~l~pg~~~~~~i~ 710 (862)
....-.++++|.++.++ -|.+..+.+ .|.+. +..+.|.||++.++.|.
T Consensus 18 ~~~~~~l~l~N~s~~~i-~fKiktt~~~~y~v~----P~~G~i~p~~~~~i~I~ 66 (109)
T PF00635_consen 18 KQQSCELTLTNPSDKPI-AFKIKTTNPNRYRVK----PSYGIIEPGESVEITIT 66 (109)
T ss_dssp S-EEEEEEEEE-SSSEE-EEEEEES-TTTEEEE----SSEEEE-TTEEEEEEEE
T ss_pred ceEEEEEEEECCCCCcE-EEEEEcCCCceEEec----CCCEEECCCCEEEEEEE
Confidence 34578889999998763 355554432 23332 45668999998766663
No 302
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=26.50 E-value=1.8e+02 Score=29.73 Aligned_cols=57 Identities=19% Similarity=0.266 Sum_probs=29.2
Q ss_pred CCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhc
Q 002971 91 KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (862)
Q Consensus 91 ~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 150 (862)
.+.++-.|+.|+.+.+.--+..+... .+.+.+..+|.|.+..|.-+.==+|-++..+
T Consensus 128 ~~~~~w~rraaiv~~l~~~k~~~~~~---~if~i~E~~l~d~e~fV~KAigWaLrq~~k~ 184 (222)
T COG4912 128 EEDNRWERRAAIVHQLVYKKKTLDLL---EIFEIIELLLGDKEFFVQKAIGWALRQIGKH 184 (222)
T ss_pred ccchHHHHHHHHHHHHHHhcCccchh---HHHHHHHHHccChHHHHHHHHHHHHHHHHhh
Confidence 33445555555555544444444333 2555566666666555555544455555553
No 303
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=26.30 E-value=5.9e+02 Score=30.80 Aligned_cols=64 Identities=19% Similarity=0.224 Sum_probs=48.7
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcC-CChhHHHHHHHHHHHHh
Q 002971 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISD-NNPMVVANAVAALAEIE 148 (862)
Q Consensus 81 ~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d-~d~~V~~~a~~~l~~i~ 148 (862)
++-.-+.....++++.+|+.+.--+.++....|+... ...|+.+|.+ ..+++.+.++..+-+..
T Consensus 442 ~~q~L~~i~~~~p~~~lR~~~~~ll~~iL~~~p~~~r----f~~i~dlLe~c~~~~~k~~~I~~lKd~i 506 (633)
T PF08568_consen 442 FLQALLLISVYCPSPELRKIAFTLLTRILHLFPEETR----FKFIRDLLENCPFESLKASAIGWLKDEI 506 (633)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCcHhH----HHHHHHHHhcCCCHhHHHHHHHHHHHHH
Confidence 3333444455679999999999999999999998652 3777888865 67889999888887643
No 304
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=26.27 E-value=8.8e+02 Score=26.49 Aligned_cols=98 Identities=12% Similarity=0.195 Sum_probs=61.2
Q ss_pred HHHHhhcCCCCHHHHhHHHHHhcCCCh---hhhHHHHH-------HHHHhhhCCCC-------------hHHHHHHHHHH
Q 002971 49 NTFVKDSQDPNPLIRALAVRTMGCIRV---DKITEYLC-------DPLQRCLKDDD-------------PYVRKTAAICV 105 (862)
Q Consensus 49 ntl~kDl~~~n~~ir~lALr~l~~i~~---~~~~~~l~-------~~v~~~l~d~~-------------~yVRk~A~~~l 105 (862)
..+.+-|++..+.+...|||-|..|.. ...++.+. +.+.+++..+. +-||..++.-+
T Consensus 59 k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~ 138 (330)
T PF11707_consen 59 KLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFW 138 (330)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHHH
Confidence 345677788888888899999887754 45555543 34445543211 37899988888
Q ss_pred HHHHhhcccc-----ccccchHHHHHHhhcCCChhHHHHHHHHHHH
Q 002971 106 AKLYDINAEL-----VEDRGFLESLKDLISDNNPMVVANAVAALAE 146 (862)
Q Consensus 106 ~kl~~~~p~~-----~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~ 146 (862)
+.+....+.. +...++...+-+-|.++++.++...+..|.+
T Consensus 139 Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~ 184 (330)
T PF11707_consen 139 LSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKD 184 (330)
T ss_pred HHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHH
Confidence 8887754432 2223344455555555666667666666664
No 305
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.25 E-value=8.1e+02 Score=30.30 Aligned_cols=89 Identities=12% Similarity=0.234 Sum_probs=47.2
Q ss_pred CCCHHHHhHHHHHhcCCC--hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCCh
Q 002971 57 DPNPLIRALAVRTMGCIR--VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNP 134 (862)
Q Consensus 57 ~~n~~ir~lALr~l~~i~--~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~ 134 (862)
+.+|.-|+++|+.++... .||..+ .-..|...+.+.+..=-+.|..|..++-..+.+... .+...+.+++...+.
T Consensus 113 snDp~aRAllL~ilg~~s~lipEfn~-~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk~FA~--si~gkis~mIef~d~ 189 (970)
T KOG1988|consen 113 SNDPVARALLLRILGQLSALIPEFNQ-VHHLIRISLDSHHELEVEAAEFAAACFAAQSKDFAC--SICGKISDMIEFLDL 189 (970)
T ss_pred CCCHHHHHHHHHHHHHhhhhcccccc-hhHHHHHHhcCccchhhHHHHHHHhhhhhhhhhhHH--HHHHHHHHHhhcccC
Confidence 456788888888888765 344332 223355555444433335556666555554444332 244555566654332
Q ss_pred h--HHHHHHHHHHHHh
Q 002971 135 M--VVANAVAALAEIE 148 (862)
Q Consensus 135 ~--V~~~a~~~l~~i~ 148 (862)
. ....++.++..+.
T Consensus 190 ~~~mkL~li~Vfs~M~ 205 (970)
T KOG1988|consen 190 PVPMKLSLIPVFSHMH 205 (970)
T ss_pred CCCcchhHhHHHHHhc
Confidence 2 2345555565554
No 306
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.95 E-value=1.3e+03 Score=28.45 Aligned_cols=117 Identities=14% Similarity=0.105 Sum_probs=69.5
Q ss_pred HHHhHhccC--CCcchHHHHHHHHHHhcCCC----CcHHHH----HHHHHHh----h-cCCCC--HHHHhHHHHHhcCCC
Q 002971 12 TDVVNCMQT--ENLELKKLVYLYLINYAKSQ----PDLAIL----AVNTFVK----D-SQDPN--PLIRALAVRTMGCIR 74 (862)
Q Consensus 12 ~~vv~l~~s--~~~~~Kkl~Yl~l~~~~~~~----~el~~L----~intl~k----D-l~~~n--~~ir~lALr~l~~i~ 74 (862)
..+++++.. .|...|-.+.+|..+|.+.+ +|.... .-+.|++ - +++++ ...-+-||..+|+-.
T Consensus 40 l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~D 119 (960)
T KOG1992|consen 40 LLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRD 119 (960)
T ss_pred HHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccc
Confidence 345566654 37889999999999998743 221000 0111111 1 12221 233366888888877
Q ss_pred hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHH-HHhhccccccccchHHHHHHhh
Q 002971 75 VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAK-LYDINAELVEDRGFLESLKDLI 129 (862)
Q Consensus 75 ~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~k-l~~~~p~~~~~~~~~~~l~~lL 129 (862)
-|+=.+.|++++..-+...+- +--+++++..+ +|+++.-..+...+...|+..|
T Consensus 120 FP~kWptLl~dL~~~ls~~D~-~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vL 174 (960)
T KOG1992|consen 120 FPDKWPTLLPDLVARLSSGDF-NVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVL 174 (960)
T ss_pred cchhhHHHHHHHHhhccccch-HHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHH
Confidence 888899999999999986554 44555555555 8887654443333444455444
No 307
>KOG3252 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.57 E-value=1.7e+02 Score=28.75 Aligned_cols=49 Identities=24% Similarity=0.289 Sum_probs=34.9
Q ss_pred HHhcCCC--hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccc
Q 002971 68 RTMGCIR--VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED 118 (862)
Q Consensus 68 r~l~~i~--~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~ 118 (862)
..|..|. +||....|...|..-.++ +.| -+-|-+|++|+|+.+|+.+..
T Consensus 12 e~l~ginryNPE~latLe~yVq~qak~-ntY-dleanL~vLkLYQfnP~~~nt 62 (217)
T KOG3252|consen 12 ELLVGINRYNPENLATLENYVQAQAKE-NTY-DLEANLAVLKLYQFNPEFFNT 62 (217)
T ss_pred HHHHhcccCChhHHHHHHHHHHHHHhc-ccc-chhHHHHHHHHHhcCHHHhhh
Confidence 3444443 688887777777655544 334 478999999999999998764
No 308
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=25.39 E-value=1.2e+02 Score=28.27 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=33.9
Q ss_pred HHHHHHHHhhhCC----CChHHHHHHHHHHHHHHhhc-cccccccchHHHHHHhhcCCCh
Q 002971 80 EYLCDPLQRCLKD----DDPYVRKTAAICVAKLYDIN-AELVEDRGFLESLKDLISDNNP 134 (862)
Q Consensus 80 ~~l~~~v~~~l~d----~~~yVRk~A~~~l~kl~~~~-p~~~~~~~~~~~l~~lL~d~d~ 134 (862)
+.+...+.+.+.. .++.+.+++.-|+....+.- ++.+...++++.+..+|.+.+.
T Consensus 81 ~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~ 140 (148)
T PF08389_consen 81 PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPEL 140 (148)
T ss_dssp HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHH
Confidence 3334444444443 23788888888888877743 3444444678888888855443
No 309
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=24.80 E-value=2e+02 Score=28.59 Aligned_cols=93 Identities=19% Similarity=0.177 Sum_probs=57.1
Q ss_pred cchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCC--CChHHHHH
Q 002971 23 LELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD--DDPYVRKT 100 (862)
Q Consensus 23 ~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~d--~~~yVRk~ 100 (862)
.+.|.+.+=+= .+...+|+... .+.+-..-.|+....-|+..|..-...+.... ..+|.. +++.||+-
T Consensus 27 ~~ek~~lW~~R-~~l~~~p~aL~----~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~A-----L~LL~~~f~~~~VR~y 96 (184)
T PF00613_consen 27 EEEKELLWKYR-YYLMNNPEALP----KLLRSVDWWNPEEVSEAYQLLLQWPPISPEDA-----LELLSPNFPDPFVRQY 96 (184)
T ss_dssp HHHHHHHHHTH-HHHTTSGGGHH----HHHTTSTTTSHHHHHHHHHHHHTSHCTTHHHH-----HHCTSTT---HHHHHH
T ss_pred HHHHHHHHHCC-HHhhhCchHHH----HHHhhCCCCchhhHHHHHHHHHcCCCCCHHHH-----HHHHHhhccHHHHHHH
Confidence 34667666654 56667777332 44445566777777888888876544333332 344443 56899999
Q ss_pred HHHHHHHHHhhccccccccchHHHHHHhhc
Q 002971 101 AAICVAKLYDINAELVEDRGFLESLKDLIS 130 (862)
Q Consensus 101 A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~ 130 (862)
|+-++-+ ..++.+. .+++.|.++|+
T Consensus 97 Av~~L~~---~~d~~l~--~yLpQLVQaLr 121 (184)
T PF00613_consen 97 AVRRLES---LSDEELL--FYLPQLVQALR 121 (184)
T ss_dssp HHHHHCT---S-HHHHH--HHHHHHHHHGG
T ss_pred HHHHHHH---cCchHHH--HHHHHHHHHhe
Confidence 8888755 3344444 38888888886
No 310
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=24.76 E-value=6.5e+02 Score=24.43 Aligned_cols=106 Identities=16% Similarity=0.250 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHhhcc---ccccccchHHHHHHhhcC--CChhHHHHHHHHHHHHhhcCCCCccccc--HHHHHHHHH
Q 002971 96 YVRKTAAICVAKLYDINA---ELVEDRGFLESLKDLISD--NNPMVVANAVAALAEIEENSSRPIFEIT--SHTLSKLLT 168 (862)
Q Consensus 96 yVRk~A~~~l~kl~~~~p---~~~~~~~~~~~l~~lL~d--~d~~V~~~a~~~l~~i~~~~~~~~~~l~--~~~~~~Ll~ 168 (862)
-.-.-|.-|+..+..+.- |.+. ..|+.++...++- .|+.|...|++.|..+..+++.. +... .-.+..|+.
T Consensus 32 ~~La~~L~af~eLMeHg~vsWd~l~-~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~l-y~~V~~evt~~~Li~ 109 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSWDTLS-DSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKL-YQLVEQEVTLESLIR 109 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCchhhcc-HHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHH-HHHHhccCCHHHHHH
Confidence 344556666666666421 3333 2588888777763 37899999999998888765431 1111 113567778
Q ss_pred HhccCChhHHHHHHHHHhhc-ccccHHHHHHHHHHH
Q 002971 169 ALNECTEWGQVFILDALSRY-KAADAREAENIVERV 203 (862)
Q Consensus 169 ~l~~~~~w~q~~iL~~L~~~-~~~~~~~~~~il~~v 203 (862)
.|...++=.|.+.+.++..+ ...++.+...+.+.+
T Consensus 110 hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~~~l 145 (160)
T PF11841_consen 110 HLQVSNQEIQTNAIALINALFLKADDSKRKEIAETL 145 (160)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 88788888888887777643 344444444544443
No 311
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.76 E-value=1.4e+03 Score=28.22 Aligned_cols=305 Identities=14% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHhhh------------CCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHH
Q 002971 80 EYLCDPLQRCL------------KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEI 147 (862)
Q Consensus 80 ~~l~~~v~~~l------------~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i 147 (862)
+.+.|.+.+.+ .|-+..++|-|+.+..-+.-..=.-.-+ |-.-+...+ +-|+
T Consensus 430 qllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~d--F~~Wl~~~l--------------lpEl 493 (978)
T KOG1993|consen 430 QLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILD--FDKWLQEAL--------------LPEL 493 (978)
T ss_pred HhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHhh--------------CHHh
Q ss_pred hhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCC-ChHHHHHHHHHHHHhh
Q 002971 148 EENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHA-NCAVVLSAVKMILQQM 226 (862)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~-n~aV~~eai~~i~~~~ 226 (862)
. ......++++..+--++.. |.-+++.+=+.... +..+..+++.. +..|.+++++++--..
T Consensus 494 ~--~~~~~~RiiRRRVa~ilg~------Wvsvq~~~e~k~l~----------Y~a~lnLL~d~~D~vV~Ltt~~tlkl~v 555 (978)
T KOG1993|consen 494 A--NDHGNSRIIRRRVAWILGQ------WVSVQQKLELKPLL----------YCAFLNLLQDQNDLVVRLTTARTLKLVV 555 (978)
T ss_pred h--hcccchhHHHHHHHHHHhh------hhheechHhHHHHH----------HHHHHHhcCccccceeehHHHHHHHHhh
Q ss_pred hccC-ChHHHHHHHHhcccchhhcc--cCChhHHHHHHHHHHHHHhhChhhhhccceEEEecCCCcHHHHHHHHHHHHHh
Q 002971 227 ELIT-STDVVRNLCKKMAPPLVTLL--SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKL 303 (862)
Q Consensus 227 ~~~~-~~~~~~~~~~~~~~~L~~ll--s~~~~iry~aL~~l~~i~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l 303 (862)
+..+ +++....+..++-..+..++ -.+-+.|-.+|..|..++.+-.+.+++
T Consensus 556 DD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P-------------------------- 609 (978)
T KOG1993|consen 556 DDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAP-------------------------- 609 (978)
T ss_pred hhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhH--------------------------
Q ss_pred cCcCcHHHHHHHHHHhhh------hccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhcc----------hhHHH
Q 002971 304 ASDRNIDQVLLEFKEYAT------EVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVN----------YVVQE 367 (862)
Q Consensus 304 ~~~~Nv~~Iv~eL~~y~~------~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~----------~v~~e 367 (862)
...++..|+. +..+=++..++.++..+.........-+-+++...+..+-+ .-.-|
T Consensus 610 --------~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgme 681 (978)
T KOG1993|consen 610 --------YASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGME 681 (978)
T ss_pred --------HHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHH
Q ss_pred HHHHHHHHHHhCcccHHHHHHHHHHhhccCCchHHHHHHHHHHhhcccccCC------HHHHHHHHhhhCCCCCHHHHHH
Q 002971 368 AIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN------ADELLESFLESFPEEPAQVQLQ 441 (862)
Q Consensus 368 ~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~------~~~~l~~~~~~~~~e~~~v~~~ 441 (862)
.|.....-...-++..-..+++|...++ ...+....+.-|+.-|.=+... +..+++.+.+-+.+-..+...+
T Consensus 682 LW~~~L~n~~~l~p~ll~L~p~l~~~iE--~ste~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dvr~egl~a 759 (978)
T KOG1993|consen 682 LWLTTLMNSQKLTPELLLLFPHLLYIIE--QSTENLPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDVRNEGLQA 759 (978)
T ss_pred HHHHHHhcccccCHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q ss_pred HHHHHHHHhhcCC
Q 002971 442 LLTATVKLFLKKP 454 (862)
Q Consensus 442 iLta~~Kl~~~~~ 454 (862)
+|...--+...+|
T Consensus 760 vLkiveili~t~~ 772 (978)
T KOG1993|consen 760 VLKIVEILIKTNP 772 (978)
T ss_pred HHHHHHHHHhhhH
No 312
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=24.64 E-value=3.5e+02 Score=24.94 Aligned_cols=48 Identities=17% Similarity=0.362 Sum_probs=36.5
Q ss_pred HHHHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhh
Q 002971 180 FILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQME 227 (862)
Q Consensus 180 ~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~ 227 (862)
++++=++.....+..+..++++.+..+|++.++-|.+.|.+++-++..
T Consensus 20 y~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~ 67 (122)
T cd03572 20 YLYEEIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCE 67 (122)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHh
Confidence 334444444455667788899999999999999898999999887654
No 313
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.27 E-value=2.7e+02 Score=31.67 Aligned_cols=85 Identities=16% Similarity=0.193 Sum_probs=58.5
Q ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCcccHHHHH
Q 002971 308 NIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESII 387 (862)
Q Consensus 308 Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i 387 (862)
|+..+++||.. +...++-....++|..++.....-......+|+.+++.++..+..-+.+.+-.++.+.+-.+..++
T Consensus 7 kl~~lIeelT~---sg~~~~~p~~~k~lkkiv~~sdee~~~~~~~L~~~~~~~h~~vR~l~lqii~elF~rs~~FR~lii 83 (661)
T KOG2374|consen 7 KLIGLIEELTK---SGAQEVDPRLLKALKKIVRYSDEEVRLSSQTLMELMRHNHSQVRYLTLQIIDELFMRSKLFRTLII 83 (661)
T ss_pred HHHHHHHHHhh---cCCcccChHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44555555542 222334344455555555544445667789999999999988888888888888888888888888
Q ss_pred HHHHHhhc
Q 002971 388 ATLCESLD 395 (862)
Q Consensus 388 ~~L~~~l~ 395 (862)
..+-++|+
T Consensus 84 ~n~~efLe 91 (661)
T KOG2374|consen 84 ENLDEFLE 91 (661)
T ss_pred hCHHHHHH
Confidence 87777765
No 314
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.93 E-value=1.2e+03 Score=27.07 Aligned_cols=143 Identities=19% Similarity=0.174 Sum_probs=82.8
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccccccc--chH-HHHHHhhcCCChhHHHHHHHHHHHHhhcCCC-Cc
Q 002971 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDR--GFL-ESLKDLISDNNPMVVANAVAALAEIEENSSR-PI 155 (862)
Q Consensus 80 ~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~--~~~-~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~-~~ 155 (862)
..+...+-.-..|++.-+|.-|+-++..++...|+-+... ..+ ..+..|.++.|..|+..++.+|.-+.+.-.. ..
T Consensus 257 ~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l 336 (533)
T KOG2032|consen 257 GSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL 336 (533)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch
Confidence 3445555566678999999999999999999888866421 123 3445566677899999888888776554211 11
Q ss_pred ccccHHHHHHHHHHhccCChh---HHHHHHHHHhhcccccHHH--HHHHHHHHHH---hhcCCChHHHHHHHHHHH
Q 002971 156 FEITSHTLSKLLTALNECTEW---GQVFILDALSRYKAADARE--AENIVERVTP---RLQHANCAVVLSAVKMIL 223 (862)
Q Consensus 156 ~~l~~~~~~~Ll~~l~~~~~w---~q~~iL~~L~~~~~~~~~~--~~~il~~v~~---~l~~~n~aV~~eai~~i~ 223 (862)
-....++.-++.+...+-++- .-..++..|..|+-..-++ .+.+.....+ .++..|+-|.-+ ++..+
T Consensus 337 ~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~A-Cr~~~ 411 (533)
T KOG2032|consen 337 ESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARA-CRSEL 411 (533)
T ss_pred hhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHH-HHHHH
Confidence 112223334444444332222 3345666777776443332 2234333334 356777766544 34443
No 315
>PF06857 ACP: Malonate decarboxylase delta subunit (MdcD); InterPro: IPR023439 This family consists of the acyl carrier protein found in malonate decarboxylase and citrate lyase. This subunit has the same covalently bound prosthetic group, derived from and similar to coenzyme A, as does citrate lyase, although this protein and the acyl carrier protein of citrate lyase do not show significant sequence similarity. Both malonyl and acetyl groups are transferred to the prosthetic group for catalysis.
Probab=23.53 E-value=1.9e+02 Score=24.96 Aligned_cols=45 Identities=9% Similarity=0.129 Sum_probs=35.6
Q ss_pred EEecCCccEEEEEEeecCCCceEEEEecC-CCchHHHHHHHHHHHHh
Q 002971 816 AKIPPGVPFLIELTTVIGNPGVKCAIKTP-NPDIASLFFEAIETLLK 861 (862)
Q Consensus 816 ~~~~~~~~~L~~l~~~~~~~~~~ltvrs~-~~~v~~~l~~~i~~~l~ 861 (862)
+|+.....|++.+++... +.+.+.++|+ ..+....+.+.+...|.
T Consensus 8 aGtleSsD~~V~v~p~~~-~gi~i~l~S~v~~~fg~~i~~vi~~~l~ 53 (87)
T PF06857_consen 8 AGTLESSDLEVTVEPAES-GGIEIELESSVVKQFGDQIRAVIRETLE 53 (87)
T ss_pred EcccccCcEEEEEEeCCC-CcEEEEEEchHHhhhHHHHHHHHHHHHH
Confidence 667777789999998754 6799999999 66688888888777664
No 316
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=23.48 E-value=4.4e+02 Score=30.69 Aligned_cols=71 Identities=20% Similarity=0.229 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhhC----------CCChHHHHHHHHHHHHHHhhccccccc--cchHHHHHHhhcC--CChhHHHHHHHHH
Q 002971 79 TEYLCDPLQRCLK----------DDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISD--NNPMVVANAVAAL 144 (862)
Q Consensus 79 ~~~l~~~v~~~l~----------d~~~yVRk~A~~~l~kl~~~~p~~~~~--~~~~~~l~~lL~d--~d~~V~~~a~~~l 144 (862)
+..|+|.|.-|+. |.++.+|.-|+.-+.++++..++.... ..++..+.+.+.| +..+..+.|+..|
T Consensus 286 lh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL 365 (576)
T KOG2549|consen 286 LHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGL 365 (576)
T ss_pred HHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHH
Confidence 3445556655553 467789999999999998887776542 1233444455544 4677777887777
Q ss_pred HHHhh
Q 002971 145 AEIEE 149 (862)
Q Consensus 145 ~~i~~ 149 (862)
.++..
T Consensus 366 ~~lg~ 370 (576)
T KOG2549|consen 366 SELGH 370 (576)
T ss_pred HHhhh
Confidence 77643
No 317
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=23.40 E-value=97 Score=29.37 Aligned_cols=45 Identities=20% Similarity=0.308 Sum_probs=36.3
Q ss_pred HHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCC
Q 002971 48 VNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDD 93 (862)
Q Consensus 48 intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~d~ 93 (862)
-+.+..=|.++|+.++.+||.+|.....+.+.+| -+.+.+++.|.
T Consensus 19 ~~~~~~LL~~~d~~vQklAL~cll~~k~~~l~pY-~d~L~~Lldd~ 63 (141)
T PF07539_consen 19 YDALLRLLSSRDPEVQKLALDCLLTWKDPYLTPY-KDNLENLLDDK 63 (141)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHhH-HHHHHHHcCcc
Confidence 3445667789999999999999999999988887 46677777663
No 318
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=23.36 E-value=4.9e+02 Score=22.51 Aligned_cols=53 Identities=13% Similarity=0.110 Sum_probs=33.3
Q ss_pred CCeeEEEEEEEecCCCCcccceeeecc-cccCcccCCCCCCCcCCCCCeeeEEEeee
Q 002971 657 DGQVFYSMLFENNTQTPLDGFMIQFNK-NTFGLAAGGALQVPQLQPGTSGRTLLPMV 712 (862)
Q Consensus 657 ~~~~~l~l~~~N~s~~~it~f~~q~~~-n~~gl~~~~~~~~~~l~pg~~~~~~i~i~ 712 (862)
+......++++|.+..+. .|++.... ....+.. .+....|+||++.+..+.+.
T Consensus 19 g~~~~~~v~l~N~s~~p~-~f~v~~~~~~~~~~~v--~~~~g~l~PG~~~~~~V~~~ 72 (102)
T PF14874_consen 19 GQTYSRTVTLTNTSSIPA-RFRVRQPESLSSFFSV--EPPSGFLAPGESVELEVTFS 72 (102)
T ss_pred CCEEEEEEEEEECCCCCE-EEEEEeCCcCCCCEEE--ECCCCEECCCCEEEEEEEEE
Confidence 445678999999998873 56665432 1111211 22345899999877777665
No 319
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=23.35 E-value=1.1e+03 Score=26.64 Aligned_cols=90 Identities=16% Similarity=0.189 Sum_probs=58.0
Q ss_pred HHHhHHHHHhcCCChhh----hHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccc--cchHHHHHHhhc-CCC
Q 002971 61 LIRALAVRTMGCIRVDK----ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLIS-DNN 133 (862)
Q Consensus 61 ~ir~lALr~l~~i~~~~----~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~--~~~~~~l~~lL~-d~d 133 (862)
.+=.+=++.+.+-.... +-..++..+..++.+++|.-|...-..+.++|.+.++.-.- ..+.+.+.+.+. ...
T Consensus 109 ~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~ 188 (409)
T PF01603_consen 109 LVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETER 188 (409)
T ss_dssp HHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCccc
Confidence 34455666776655433 45677778889999999999999999999999998876531 122334444444 456
Q ss_pred hhHHHHHHHHHHHHhhc
Q 002971 134 PMVVANAVAALAEIEEN 150 (862)
Q Consensus 134 ~~V~~~a~~~l~~i~~~ 150 (862)
+..++.++-.+..|...
T Consensus 189 ~~gI~elLeil~sii~g 205 (409)
T PF01603_consen 189 HNGIAELLEILGSIING 205 (409)
T ss_dssp -STHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHhc
Confidence 66677777777777653
No 320
>PTZ00479 RAP Superfamily; Provisional
Probab=23.09 E-value=1.1e+03 Score=26.78 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=50.8
Q ss_pred ChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCC
Q 002971 133 NPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHAN 211 (862)
Q Consensus 133 d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n 211 (862)
|+.-+++++---..+.+++ ..+.+..-++++...+...|.-...|+--+.+..-.+.+-...+++.+...+.+-+
T Consensus 59 d~~~is~~vqkaat~rkhD----~~Lw~~f~~Rilel~dtL~Pqqig~Ilyg~gKsr~~~~efy~~~~~~v~~~L~~fs 133 (435)
T PTZ00479 59 DGWYLSACVQKAATLRKHD----LELWHGFTNRLLELSDTLTPQQIGYIFYGYGKSRFLNPEFYEKMLKFVQPLLPNFY 133 (435)
T ss_pred CHHHHHHHHHHHHhhhhch----HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhhcC
Confidence 3344455544444444444 46667778899999999999999999988887666666666667777666655433
No 321
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=23.04 E-value=2e+02 Score=28.95 Aligned_cols=89 Identities=15% Similarity=0.247 Sum_probs=49.2
Q ss_pred EEEEEEecCCCCcccceeeecccccCcccCCCCCCCcCCCCCeeeEEEeeeecCCCCCCCCCcceEEEEecCCCCeEEEE
Q 002971 662 YSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFN 741 (862)
Q Consensus 662 l~l~~~N~s~~~it~f~~q~~~n~~gl~~~~~~~~~~l~pg~~~~~~i~i~~~~~~~~~~~~~~l~~~~k~~~~~~~~~~ 741 (862)
=.+.+.|+++.++ +|.+....+.+ + ..-++.+.|.|++.+++.+-+.-.+.... | .|.|.+-+ +.
T Consensus 21 e~~sv~Nnspepv-gfKVKTTaPK~-Y--cVRPN~g~Iep~stv~VeVilq~l~eEpa-p-----dfKCrdKF-----Li 85 (242)
T COG5066 21 EMFSVQNNSPEPV-GFKVKTTAPKD-Y--CVRPNMGLIEPMSTVEVEVILQGLTEEPA-P-----DFKCRDKF-----LI 85 (242)
T ss_pred eeeEeecCCCCce-eEEeeccCCcc-e--eEcCCCceeccCCeeEEEEEeeccccCCC-C-----Ccccccee-----EE
Confidence 3455677777774 56664433221 1 11246678999998888776543332211 2 45566532 11
Q ss_pred eccccccccccCCCCChHHHHHHhccCCCC
Q 002971 742 DKISLHVLFTEDGRMERGSFLETWRSLPDS 771 (862)
Q Consensus 742 l~~Pl~~l~~~~~~~~~~~F~~~W~~l~~~ 771 (862)
..+++ +-.++..+|...|.++...
T Consensus 86 qs~~~------~~~l~g~d~ad~wt~~sk~ 109 (242)
T COG5066 86 QSYRF------DWRLSGSDFADHWTSSSKK 109 (242)
T ss_pred EEecc------ChhhccchHHHHHHhhccc
Confidence 11121 2345568999999998764
No 322
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=22.57 E-value=9.1e+02 Score=29.37 Aligned_cols=108 Identities=15% Similarity=0.146 Sum_probs=65.8
Q ss_pred CCChHHHHHHHHHHHHHHhhc---cc-----cccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHH
Q 002971 92 DDDPYVRKTAAICVAKLYDIN---AE-----LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTL 163 (862)
Q Consensus 92 d~~~yVRk~A~~~l~kl~~~~---p~-----~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~ 163 (862)
+.++++-++++=++--+---. ++ .++.+.-.+.|.+||.-.|..|+.++..+|..+..+-. ..-.+-...+
T Consensus 530 s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~r-nk~ligk~a~ 608 (717)
T KOG1048|consen 530 SKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIR-NKELIGKYAI 608 (717)
T ss_pred hcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCch-hhhhhhcchH
Confidence 355666666665555443211 11 11223346889999998899999999999988865421 1111224568
Q ss_pred HHHHHHhccCCh-----hH-HHHHHHHHhhcccccHHHHHHHH
Q 002971 164 SKLLTALNECTE-----WG-QVFILDALSRYKAADAREAENIV 200 (862)
Q Consensus 164 ~~Ll~~l~~~~~-----w~-q~~iL~~L~~~~~~~~~~~~~il 200 (862)
+.|+++|.+..+ |- .+.++..|..+...+...+.+++
T Consensus 609 ~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~ 651 (717)
T KOG1048|consen 609 PDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLL 651 (717)
T ss_pred HHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHH
Confidence 899999987554 53 34566666666655555555543
No 323
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=22.35 E-value=1.4e+03 Score=27.41 Aligned_cols=89 Identities=16% Similarity=0.220 Sum_probs=59.8
Q ss_pred ccHHHHHHHHHHHHHHHHh-----hhHhHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCcccHHHH-----HHHHHH
Q 002971 323 VDVDFVRKAVRAIGRCAIK-----LERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESI-----IATLCE 392 (862)
Q Consensus 323 ~d~~~~~~~i~~I~~la~k-----~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~-----i~~L~~ 392 (862)
.|.+|++.+.......+.. -..+.....+-|++++......|-..+..++++++-++.+.+... |..+..
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s 468 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILES 468 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHH
Confidence 4778888776555443332 223444667778888877666676667779999999988877654 445555
Q ss_pred hhccCCchHHHHHHHHHHhh
Q 002971 393 SLDTLDEPEAKASMIWIIGE 412 (862)
Q Consensus 393 ~l~~~~~~~~~~~~~wilGE 412 (862)
++.+. .+..++...|++-.
T Consensus 469 ~~~~~-~~n~r~~~~~~Lr~ 487 (678)
T KOG1293|consen 469 MLTDP-DFNSRANSLWVLRH 487 (678)
T ss_pred HhcCC-CchHHHHHHHHHHH
Confidence 55433 45678888999865
No 324
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=22.24 E-value=6.3e+02 Score=29.50 Aligned_cols=60 Identities=18% Similarity=0.144 Sum_probs=34.6
Q ss_pred HHHhCcccHHHHHHHHHHhhccCCchHHHHHHHHHHhhcccccC-CHHHHHHHHhhhCCCC
Q 002971 375 IFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID-NADELLESFLESFPEE 434 (862)
Q Consensus 375 i~~~~p~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~-~~~~~l~~~~~~~~~e 434 (862)
|.++.++.-+.++..|+-.+.+-+.......++-+|..|+.... ...+.++.+...+...
T Consensus 226 I~Qk~~evL~~ciP~L~g~l~ds~~~~i~~~Ilk~ia~~~pv~l~~~~E~l~e~~~~~p~~ 286 (851)
T KOG3723|consen 226 IKQKQLEVLQKCIPFLIGHLKDSTHNDIILNILKEIAVYEPVALNSFLEMLKEIGERFPYL 286 (851)
T ss_pred HHhccHHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCccchhhHHHHHHHHHHhCCCc
Confidence 44455666666666676666555555555556666666665432 2445566666555543
No 325
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=22.23 E-value=2e+02 Score=29.13 Aligned_cols=65 Identities=20% Similarity=0.306 Sum_probs=46.0
Q ss_pred CCCCHHHHhHHHHH-hcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHH
Q 002971 56 QDPNPLIRALAVRT-MGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLE 123 (862)
Q Consensus 56 ~~~n~~ir~lALr~-l~~i~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~ 123 (862)
.|.|...|-.|+-+ +..+...+ .+.+...+..++.|+.-+|+|...-++--+.+.+|+.+.+ |+.
T Consensus 125 ~s~~~W~rR~ai~~~l~~~~~~~-~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~--fl~ 190 (208)
T cd07064 125 TDENFWLRRTAILHQLKYKEKTD-TDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRD--FVA 190 (208)
T ss_pred cCCcHHHHHHHHHHHHHHHHccC-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHH--HHH
Confidence 66777666555543 33233222 3566667888899999999999999999999999987764 543
No 326
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=22.08 E-value=4.5e+02 Score=28.46 Aligned_cols=139 Identities=14% Similarity=0.201 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHH
Q 002971 25 LKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAIC 104 (862)
Q Consensus 25 ~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~ 104 (862)
.|+--|+.+..+ |++..+..|++.-++.. ...-..++.+=-..- ......+++.+.|-..|+-+.-.
T Consensus 169 ~~FF~~vq~p~F-----diasdA~~tfK~llt~H----k~~vaEfl~~n~d~f----f~e~~~~Ll~s~Nyvtkrqs~kl 235 (342)
T KOG1566|consen 169 EKFFLYVQLPNF-----DIASDAFSTFKELLTRH----KSVVAEFLIRNYDNF----FAEVYEKLLRSENYVTKRQSLKL 235 (342)
T ss_pred HHHHHHHhccch-----HHHHHHHHHHHHHHHHh----HHHHHHHHHhChhhh----HHHHHHHHhcccceehHHHHHHh
Confidence 444455544433 56666666666555433 111222222211111 12336778888888888888888
Q ss_pred HHHHHhhcccccccc------chHHHHHHhhcCCChhHHHHHHHHHHHHhhc--CCCCcccccHHHHHHHHHHhccCChh
Q 002971 105 VAKLYDINAELVEDR------GFLESLKDLISDNNPMVVANAVAALAEIEEN--SSRPIFEITSHTLSKLLTALNECTEW 176 (862)
Q Consensus 105 l~kl~~~~p~~~~~~------~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~--~~~~~~~l~~~~~~~Ll~~l~~~~~w 176 (862)
++.++.-.|+.-... .-...+..+|.|+.......|...+--...+ .+.+. ..++..
T Consensus 236 lg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V--------~~IL~~------- 300 (342)
T KOG1566|consen 236 LGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPV--------RDILVR------- 300 (342)
T ss_pred HHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchH--------HHHHHh-------
Confidence 888887766543322 2345667889999999999998887654433 23222 222211
Q ss_pred HHHHHHHHHhhcccc
Q 002971 177 GQVFILDALSRYKAA 191 (862)
Q Consensus 177 ~q~~iL~~L~~~~~~ 191 (862)
-+-++++++..|.+.
T Consensus 301 Nr~KLl~~l~~f~~d 315 (342)
T KOG1566|consen 301 NRPKLLELLHDFHTD 315 (342)
T ss_pred CcHHHHHHHHHhCCC
Confidence 245677888887754
No 327
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=21.91 E-value=4.4e+02 Score=25.47 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=24.3
Q ss_pred hhhccc--CChhHHHHHHHHHHHHHhhChhhhh
Q 002971 246 LVTLLS--AEPEIQYVALRNINLIVQRRPTILA 276 (862)
Q Consensus 246 L~~lls--~~~~iry~aL~~l~~i~~~~p~~~~ 276 (862)
|..++. .+..+|.-+++.|..|..-+|..++
T Consensus 15 L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k 47 (160)
T PF11865_consen 15 LLNILKTEQSQSIRREALRVLGILGALDPYKHK 47 (160)
T ss_pred HHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh
Confidence 455663 3578999999999999998886554
No 328
>PF14837 INTS5_N: Integrator complex subunit 5 N-terminus
Probab=21.74 E-value=8.4e+02 Score=24.90 Aligned_cols=31 Identities=26% Similarity=0.475 Sum_probs=21.0
Q ss_pred HHHHHHHHhhhhccHHHHHHHHHHHHHHHHh
Q 002971 311 QVLLEFKEYATEVDVDFVRKAVRAIGRCAIK 341 (862)
Q Consensus 311 ~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k 341 (862)
.+++||..|++..+..+....++...++|..
T Consensus 3 ~~l~~L~~fi~~~~~~~~~~~~~~lvk~al~ 33 (213)
T PF14837_consen 3 NLLDELKSFIRGVRPCYSNKSVEDLVKCALS 33 (213)
T ss_pred hHHHHHHHHHhcCCcccccccHHHHHHHHHH
Confidence 4788888888887776655555555555554
No 329
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=21.64 E-value=3.6e+02 Score=26.49 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=26.2
Q ss_pred CcCCCCCeeeEEEeeeecCCCCCCCCCcceEEEEecCCCCeEEEEeccc
Q 002971 697 PQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKIS 745 (862)
Q Consensus 697 ~~l~pg~~~~~~i~i~~~~~~~~~~~~~~l~~~~k~~~~~~~~~~l~~P 745 (862)
..|+||++++..+..-.. +.. +.++.|.+++. .|.+.-.+|
T Consensus 126 qslapG~s~~~~~~YyLP--iSg---PsN~tv~~~g~---~Yal~~d~p 166 (180)
T PF06483_consen 126 QSLAPGASVELDMVYYLP--ISG---PSNFTVNIGGK---TYALKFDYP 166 (180)
T ss_pred cccCCCCEEEEeEEEEec--cCC---CceEEEEECCE---EEEEecccC
Confidence 488899987776654332 222 23678888775 367777777
No 330
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=21.63 E-value=3.1e+02 Score=31.81 Aligned_cols=138 Identities=14% Similarity=0.191 Sum_probs=84.2
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccc---cccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCC-cc
Q 002971 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP-IF 156 (862)
Q Consensus 81 ~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~-~~ 156 (862)
.+...+.++|.+++-.|.-.+..++....-.... -+-..++++.|.+++..+|....++.+-.+..+.-+.... .+
T Consensus 431 ~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf 510 (743)
T COG5369 431 PIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKF 510 (743)
T ss_pred chHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhh
Confidence 4556678888888888888887777754432222 1223478999999998888888888888887765543221 23
Q ss_pred cccHHH-HHHHHHHhccCChhHHHHHHHHHhhcccccHH--HH----------HHHHHHHHHhhcCCChHHHHHH
Q 002971 157 EITSHT-LSKLLTALNECTEWGQVFILDALSRYKAADAR--EA----------ENIVERVTPRLQHANCAVVLSA 218 (862)
Q Consensus 157 ~l~~~~-~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~--~~----------~~il~~v~~~l~~~n~aV~~ea 218 (862)
+++.++ +.+++...++++=-.|..++++|+.+...... +. .-+.+++...+...|+.-..+.
T Consensus 511 ~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~ 585 (743)
T COG5369 511 KFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEG 585 (743)
T ss_pred hhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhh
Confidence 333222 45555555554433588999999987652211 11 1134455556666666555554
No 331
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=21.51 E-value=1.2e+03 Score=26.99 Aligned_cols=133 Identities=12% Similarity=0.101 Sum_probs=79.7
Q ss_pred CCChHHHHHHHHHHHHHHhhccccccccchHHHHH---Hhhc---CCC----hhHHHHHHHHHHHHhhcCCCCcccccHH
Q 002971 92 DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK---DLIS---DNN----PMVVANAVAALAEIEENSSRPIFEITSH 161 (862)
Q Consensus 92 d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~---~lL~---d~d----~~V~~~a~~~l~~i~~~~~~~~~~l~~~ 161 (862)
|.-+.|-|.-.++++.+|-..||+..+.+.+++|- +.+. |.| -.++.-+...|.-++.+.++..--+...
T Consensus 73 dcpd~Vy~~i~itvLacFC~~pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G 152 (698)
T KOG2611|consen 73 DCPDDVYLQISITVLACFCRVPELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASG 152 (698)
T ss_pred CCcHHHHHHHHHHHHHHHhCChhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcC
Confidence 45678999999999999999999887666655544 3343 333 4577778888888877755543333344
Q ss_pred HHHHHHHHhc--c--CChhHHHHHHHHHhh---cccccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 002971 162 TLSKLLTALN--E--CTEWGQVFILDALSR---YKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQ 224 (862)
Q Consensus 162 ~~~~Ll~~l~--~--~~~w~q~~iL~~L~~---~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~ 224 (862)
.++.++++.. + .+.-+..+++.++.. .-+.+++....++..+..-++....+--||.++++-.
T Consensus 153 ~~~~~~Q~y~~~~~~~d~alal~Vlll~~~~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~ 222 (698)
T KOG2611|consen 153 GLRVIAQMYELPDGSHDMALALKVLLLLVSKLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSA 222 (698)
T ss_pred chHHHHHHHhCCCCchhHHHHHHHHHHHHHhcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5666664432 1 123333333333321 1234444444556666655566666788888877653
No 332
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=21.44 E-value=1.6e+02 Score=28.38 Aligned_cols=92 Identities=20% Similarity=0.205 Sum_probs=61.5
Q ss_pred CCHHHHhHHHHHhcCCC---hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccc----ccccchHHHHHHhhc
Q 002971 58 PNPLIRALAVRTMGCIR---VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL----VEDRGFLESLKDLIS 130 (862)
Q Consensus 58 ~n~~ir~lALr~l~~i~---~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~----~~~~~~~~~l~~lL~ 130 (862)
..+.+|+.|+=.++.+- ..+.-+.+.+.+...+.+...--...|+.++.-+|...|+. +..+++.+.+..+..
T Consensus 17 ~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~ 96 (157)
T PF11701_consen 17 QPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLAS 96 (157)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHh
Confidence 45677888877777663 12233455566666665532224556777788889888875 334689999999988
Q ss_pred --CCChhHHHHHHHHHHHHhh
Q 002971 131 --DNNPMVVANAVAALAEIEE 149 (862)
Q Consensus 131 --d~d~~V~~~a~~~l~~i~~ 149 (862)
.+|..+..+++-+|..-+-
T Consensus 97 ~~~~~~~~~~~~lell~aAc~ 117 (157)
T PF11701_consen 97 RKSKDRKVQKAALELLSAACI 117 (157)
T ss_dssp -CTS-HHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHHHHc
Confidence 6788888888887766543
No 333
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=21.32 E-value=1.6e+02 Score=29.09 Aligned_cols=32 Identities=16% Similarity=0.178 Sum_probs=16.2
Q ss_pred ChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhc
Q 002971 94 DPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLIS 130 (862)
Q Consensus 94 ~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~ 130 (862)
+|.||.-|+-++-+ ..+|.+- -+++.|.+.|+
T Consensus 84 ~~~Vr~yAvr~L~~---~~~e~l~--~YlpQLVQaLr 115 (175)
T cd00871 84 HPLVLQYAVRVLES---YPVETVF--FYIPQIVQALR 115 (175)
T ss_pred CHHHHHHHHHHHHh---CCHHHHH--HHHHHHHHHHh
Confidence 56666666655554 1223332 25555555554
No 334
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=21.07 E-value=3.5e+02 Score=26.54 Aligned_cols=93 Identities=17% Similarity=0.119 Sum_probs=59.1
Q ss_pred cchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCC--CChHHHHH
Q 002971 23 LELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD--DDPYVRKT 100 (862)
Q Consensus 23 ~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~d--~~~yVRk~ 100 (862)
-+.|.+.+-+ ..+...+|+.. ..+.+-..-.|+.-+.-|..-|..-...+..+. ..+|.. .++.||+-
T Consensus 21 ~eek~llW~~-R~~~~~~p~aL----~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~a-----LeLL~~~f~d~~VR~y 90 (171)
T cd00872 21 EEDKELLWKL-RHECRKKPQAL----PKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQA-----LELLDCNFPDEHVREF 90 (171)
T ss_pred HHHHHHHHHH-HHHHhhCcHHH----HHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHHH-----HHHCCCcCCCHHHHHH
Confidence 4577887776 44555557743 333455566777777888888876544333332 344443 67899999
Q ss_pred HHHHHHHHHhhccccccccchHHHHHHhhc
Q 002971 101 AAICVAKLYDINAELVEDRGFLESLKDLIS 130 (862)
Q Consensus 101 A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~ 130 (862)
|+-++-++ .++.+. .+++.|.+.|+
T Consensus 91 AV~~L~~~---sd~eL~--~yL~QLVQaLK 115 (171)
T cd00872 91 AVRCLEKL---SDDELL--QYLLQLVQVLK 115 (171)
T ss_pred HHHHHHhC---CHHHHH--HHHHHHHHHHH
Confidence 99887763 444444 38888888886
No 335
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=20.66 E-value=6.2e+02 Score=22.70 Aligned_cols=35 Identities=11% Similarity=0.238 Sum_probs=19.4
Q ss_pred cHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh
Q 002971 324 DVDFVRKAVRAIGRCAIKLERAAERCISVLLELIK 358 (862)
Q Consensus 324 d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~ 358 (862)
+..-++.++++|+.+.....+....+...+.-.|+
T Consensus 28 ~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~ 62 (107)
T smart00802 28 PYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQ 62 (107)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557788888887765444443444443333333
No 336
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=20.51 E-value=1.1e+03 Score=27.35 Aligned_cols=54 Identities=22% Similarity=0.340 Sum_probs=36.8
Q ss_pred cCChhHHHHHHHHHHHHHhhChhhhhccceEEEecCCCc-HHHHHHHHHHHHHhcCcC
Q 002971 251 SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDP-IYVKMEKLEIMIKLASDR 307 (862)
Q Consensus 251 s~~~~iry~aL~~l~~i~~~~p~~~~~~~~~~~~l~~d~-~~Ik~~~L~lL~~l~~~~ 307 (862)
|..-+-+|+..+.+...+.. ++-..+.++..+..|| .+||...+.++|.|....
T Consensus 168 sk~v~~k~l~~~~fesflk~---l~fr~levle~ls~d~i~~Vk~qvv~~VydLL~a~ 222 (821)
T COG5593 168 SKEVQNKYLKQRIFESFLKN---LRFRVLEVLEVLSHDPIQYVKKQVVRLVYDLLEAR 222 (821)
T ss_pred hhhhcchHHHHHHHHHHHHH---HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcC
Confidence 44455567766666555442 3334455667788888 899999999999987654
Done!