Query 002971
Match_columns 862
No_of_seqs 328 out of 1520
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 08:30:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002971.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002971hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_B AP-2 complex subunit be 100.0 4.2E-87 1.4E-91 793.2 50.4 544 1-545 41-586 (591)
2 2vgl_A Adaptor protein complex 100.0 2.5E-82 8.6E-87 751.9 36.6 509 1-522 66-616 (621)
3 1w63_A Adapter-related protein 100.0 1.2E-75 4.1E-80 697.1 37.1 502 1-517 62-602 (618)
4 3tjz_B Coatomer subunit gamma; 100.0 1.8E-49 6.1E-54 430.1 13.5 289 1-306 55-354 (355)
5 2g30_A AP-2 complex subunit be 100.0 2.7E-37 9.2E-42 318.6 28.6 230 631-862 28-258 (258)
6 3hs8_A Adaptor protein complex 100.0 1.2E-28 4.2E-33 256.2 19.2 230 622-859 33-272 (273)
7 1kyf_A Alpha-adaptin C; protei 100.0 1.7E-27 5.8E-32 245.9 20.5 220 633-860 20-247 (247)
8 1b3u_A Protein (protein phosph 99.7 1.9E-15 6.4E-20 178.3 33.4 479 8-490 86-586 (588)
9 1b3u_A Protein (protein phosph 99.6 2.7E-13 9.3E-18 159.7 33.8 469 10-489 11-507 (588)
10 4fdd_A Transportin-1; heat rep 99.6 5.8E-13 2E-17 164.5 32.7 481 9-495 215-789 (852)
11 4fdd_A Transportin-1; heat rep 99.6 8.8E-13 3E-17 162.9 33.5 412 19-468 23-491 (852)
12 2vgl_B AP-2 complex subunit be 99.6 4.7E-14 1.6E-18 166.7 19.0 425 48-491 15-455 (591)
13 1w63_A Adapter-related protein 99.5 2.7E-13 9.2E-18 160.8 21.1 405 48-468 36-467 (618)
14 1wa5_B Importin alpha subunit; 99.5 7.3E-12 2.5E-16 146.0 30.7 341 7-378 85-458 (530)
15 2jdq_A Importin alpha-1 subuni 99.5 8.8E-12 3E-16 141.7 30.3 329 11-341 22-391 (450)
16 1u6g_C TIP120 protein, CAND1; 99.5 6.2E-12 2.1E-16 161.5 31.9 477 8-489 5-596 (1230)
17 4b8j_A Importin subunit alpha- 99.5 3.4E-11 1.2E-15 140.2 33.6 340 9-379 74-445 (528)
18 2bpt_A Importin beta-1 subunit 99.5 1.7E-10 5.9E-15 142.2 40.6 438 11-456 6-534 (861)
19 2jdq_A Importin alpha-1 subuni 99.5 3.1E-12 1.1E-16 145.5 22.7 330 46-377 20-390 (450)
20 2bpt_A Importin beta-1 subunit 99.4 5.8E-10 2E-14 137.5 41.3 480 6-488 131-708 (861)
21 2z6g_A B-catenin; FULL-length, 99.4 3.6E-11 1.2E-15 146.3 27.4 440 48-494 117-625 (780)
22 1wa5_B Importin alpha subunit; 99.4 5.7E-11 1.9E-15 138.5 27.9 333 81-415 87-457 (530)
23 2z6g_A B-catenin; FULL-length, 99.4 9.2E-11 3.1E-15 142.8 30.8 469 11-491 117-663 (780)
24 1qgr_A Protein (importin beta 99.4 2.1E-10 7E-15 141.9 32.5 472 14-489 222-869 (876)
25 1u6g_C TIP120 protein, CAND1; 99.3 1.9E-10 6.6E-15 147.6 31.8 441 9-455 48-602 (1230)
26 3ul1_B Importin subunit alpha- 99.3 3.9E-09 1.3E-13 122.2 39.3 338 9-377 57-430 (510)
27 1jdh_A Beta-catenin; beta-cate 99.3 5.9E-10 2E-14 129.4 31.5 436 41-487 12-526 (529)
28 4b8j_A Importin subunit alpha- 99.3 4.4E-10 1.5E-14 130.8 30.4 329 83-414 76-442 (528)
29 3now_A UNC-45 protein, SD10334 99.3 4.2E-10 1.4E-14 134.3 29.8 370 10-382 291-742 (810)
30 1qgr_A Protein (importin beta 99.3 2.5E-09 8.7E-14 132.0 38.2 441 11-461 3-546 (876)
31 1r4x_A Gamma1-COP, coatomer ga 99.3 9.7E-12 3.3E-16 127.7 13.0 213 638-856 40-274 (275)
32 2z6h_A Catenin beta-1, beta-ca 99.3 2.8E-09 9.7E-14 127.1 34.3 438 43-491 11-527 (644)
33 1ibr_B P95, importin beta-1 su 99.3 1E-10 3.5E-15 133.1 21.0 246 50-306 5-289 (462)
34 1pzd_A Coatomer gamma subunit; 99.3 1.7E-11 5.9E-16 129.5 12.8 213 638-856 87-321 (322)
35 3tpo_A Importin subunit alpha- 99.3 1.3E-08 4.6E-13 118.2 37.3 339 8-377 75-449 (529)
36 1oyz_A Hypothetical protein YI 99.2 1.4E-10 4.7E-15 123.2 16.3 251 47-372 24-277 (280)
37 1jdh_A Beta-catenin; beta-cate 99.2 4.4E-09 1.5E-13 122.0 29.5 434 10-449 18-528 (529)
38 2vgl_A Adaptor protein complex 99.2 6.8E-09 2.3E-13 122.7 31.0 372 25-413 59-472 (621)
39 3now_A UNC-45 protein, SD10334 99.2 2E-08 6.8E-13 120.0 33.9 400 11-415 248-737 (810)
40 2z6h_A Catenin beta-1, beta-ca 99.1 1.9E-08 6.4E-13 120.0 31.4 412 75-494 8-489 (644)
41 3ul1_B Importin subunit alpha- 99.1 1.2E-08 4E-13 118.2 27.2 256 83-340 59-345 (510)
42 3tpo_A Importin subunit alpha- 99.1 5.6E-08 1.9E-12 113.0 30.6 189 82-272 77-283 (529)
43 1ibr_B P95, importin beta-1 su 99.1 1E-08 3.5E-13 116.5 23.4 395 11-430 3-459 (462)
44 1oyz_A Hypothetical protein YI 99.0 1.6E-08 5.6E-13 107.1 22.1 193 11-225 25-219 (280)
45 3ltm_A Alpha-REP4; protein eng 99.0 1.2E-08 4E-13 103.3 17.6 185 47-271 20-205 (211)
46 3ltj_A Alpharep-4; protein eng 98.9 2.9E-08 9.9E-13 99.5 18.2 181 47-267 15-196 (201)
47 4hxt_A De novo protein OR329; 98.9 8.8E-08 3E-12 99.1 21.0 224 48-273 4-245 (252)
48 3ltj_A Alpharep-4; protein eng 98.9 7.7E-08 2.6E-12 96.4 18.8 184 8-225 13-196 (201)
49 3ltm_A Alpha-REP4; protein eng 98.9 8E-08 2.7E-12 97.0 18.8 184 8-225 18-201 (211)
50 4db8_A Armadillo-repeat protei 98.8 5.8E-08 2E-12 100.8 15.5 220 6-225 9-249 (252)
51 4hxt_A De novo protein OR329; 98.8 2.6E-07 9E-12 95.4 20.2 217 10-226 3-240 (252)
52 4db8_A Armadillo-repeat protei 98.7 9.8E-08 3.3E-12 99.1 15.0 219 48-268 14-250 (252)
53 3tjz_B Coatomer subunit gamma; 98.7 3.5E-07 1.2E-11 98.9 18.5 275 81-370 68-346 (355)
54 4db6_A Armadillo repeat protei 98.6 3.8E-07 1.3E-11 91.8 15.4 148 4-151 7-169 (210)
55 1xm9_A Plakophilin 1; armadill 98.6 5.8E-06 2E-10 94.0 23.7 166 83-251 4-195 (457)
56 2qk2_A LP04448P; mini spindles 98.5 2.1E-06 7.1E-11 88.7 16.6 198 79-279 13-216 (242)
57 4db6_A Armadillo repeat protei 98.4 4.2E-06 1.4E-10 84.0 16.1 187 80-268 11-208 (210)
58 1wa5_C Importin alpha RE-expor 98.4 0.00043 1.5E-08 86.2 37.4 407 13-451 9-525 (960)
59 3l6x_A Catenin delta-1; cateni 98.4 6.5E-05 2.2E-09 86.8 27.3 186 82-269 49-270 (584)
60 3l6x_A Catenin delta-1; cateni 98.3 4.2E-05 1.4E-09 88.4 23.5 349 47-416 49-477 (584)
61 2qk1_A Protein STU2; STU2P, XM 98.3 5.2E-06 1.8E-10 86.1 14.3 210 84-300 19-245 (249)
62 3b2a_A TON_1937, putative unch 98.3 5.2E-06 1.8E-10 81.9 13.1 190 121-318 34-231 (265)
63 2x19_B Importin-13; nuclear tr 98.3 0.00016 5.6E-09 90.0 30.5 459 12-484 27-592 (963)
64 1xm9_A Plakophilin 1; armadill 98.3 6.9E-05 2.4E-09 85.0 22.9 295 9-307 44-451 (457)
65 1te4_A Conserved protein MTH18 98.2 5.5E-07 1.9E-11 83.5 3.8 118 10-146 13-130 (131)
66 3opb_A SWI5-dependent HO expre 98.2 7E-05 2.4E-09 88.1 22.0 285 59-346 307-689 (778)
67 4ady_A RPN2, 26S proteasome re 98.2 0.00066 2.3E-08 81.5 30.0 267 48-341 394-677 (963)
68 1te4_A Conserved protein MTH18 98.2 9.2E-07 3.1E-11 82.0 4.1 118 47-187 13-130 (131)
69 3nmz_A APC variant protein; pr 98.2 8.4E-05 2.9E-09 83.7 20.4 332 47-383 33-456 (458)
70 2qk2_A LP04448P; mini spindles 98.1 2.9E-05 1E-09 80.0 14.9 140 6-150 11-163 (242)
71 2db0_A 253AA long hypothetical 98.1 0.0015 5.1E-08 61.9 23.2 213 80-340 31-246 (253)
72 2x1g_F Cadmus; transport prote 98.0 0.00027 9.3E-09 88.1 23.9 428 13-454 11-575 (971)
73 1wa5_C Importin alpha RE-expor 98.0 0.00043 1.5E-08 86.2 24.7 243 23-271 375-672 (960)
74 3nmw_A APC variant protein; AR 98.0 0.00022 7.5E-09 77.7 18.7 216 58-275 96-340 (354)
75 1xqr_A HSPBP1 protein; armadil 97.9 0.00026 9E-09 75.0 18.1 186 5-191 24-239 (296)
76 2qk1_A Protein STU2; STU2P, XM 97.8 0.00011 3.8E-09 76.0 12.8 137 16-152 23-178 (249)
77 3nmz_A APC variant protein; pr 97.8 0.00034 1.2E-08 78.7 17.4 214 58-273 212-454 (458)
78 3opb_A SWI5-dependent HO expre 97.8 0.045 1.5E-06 64.5 35.2 359 120-490 296-727 (778)
79 1xqr_A HSPBP1 protein; armadil 97.8 0.00031 1.1E-08 74.5 15.6 141 10-150 82-239 (296)
80 2x19_B Importin-13; nuclear tr 97.8 0.065 2.2E-06 66.4 38.7 129 56-189 459-598 (963)
81 3nmw_A APC variant protein; AR 97.7 0.0011 3.7E-08 72.2 18.9 221 133-384 97-341 (354)
82 2db0_A 253AA long hypothetical 97.7 0.0073 2.5E-07 57.3 20.4 197 285-486 41-241 (253)
83 3u0r_A Apoptosis inhibitor 5; 97.6 0.11 3.6E-06 57.2 32.7 134 11-150 31-164 (507)
84 3m1i_C Exportin-1; heat repeat 97.6 0.0041 1.4E-07 78.1 25.4 129 12-147 19-164 (1049)
85 4ady_A RPN2, 26S proteasome re 97.5 0.011 3.8E-07 71.1 25.5 289 6-322 389-699 (963)
86 3ibv_A Exportin-T; karyopherin 97.5 0.11 3.6E-06 64.4 35.4 426 20-455 19-570 (980)
87 2x1g_F Cadmus; transport prote 97.5 0.023 7.7E-07 70.7 29.9 196 291-490 436-662 (971)
88 3b2a_A TON_1937, putative unch 97.5 0.0027 9.1E-08 62.9 16.0 180 80-270 32-219 (265)
89 3grl_A General vesicular trans 97.3 0.2 6.8E-06 57.6 30.8 133 17-151 30-197 (651)
90 3grl_A General vesicular trans 97.3 0.086 2.9E-06 60.5 27.8 183 87-272 28-244 (651)
91 4ffb_C Protein STU2; tubulin f 97.2 0.0057 2E-07 64.1 15.3 184 86-270 14-213 (278)
92 3a6p_A Exportin-5; exportin-5, 97.2 1.1 3.7E-05 56.8 40.5 139 5-149 4-162 (1204)
93 3m1i_C Exportin-1; heat repeat 97.1 0.44 1.5E-05 59.5 34.5 159 296-455 436-622 (1049)
94 4ffb_C Protein STU2; tubulin f 97.1 0.0048 1.6E-07 64.7 13.7 190 1-227 1-212 (278)
95 4hat_C Exportin-1; heat repeat 97.0 0.29 9.9E-06 60.6 30.2 107 42-150 447-570 (1023)
96 3mnm_A ADP-ribosylation factor 96.9 0.0066 2.3E-07 54.8 11.2 89 644-733 16-108 (123)
97 3ibv_A Exportin-T; karyopherin 96.9 0.51 1.7E-05 58.3 31.9 416 58-487 20-562 (980)
98 1iu1_A Gamma1-adaptin; coated 96.7 0.0083 2.9E-07 55.9 10.5 86 644-733 36-127 (146)
99 3zy7_A AP-1 complex subunit ga 96.7 0.0079 2.7E-07 54.3 9.9 86 644-733 12-103 (122)
100 3gs3_A Symplekin, LD45768P; he 96.5 0.24 8.3E-06 50.6 20.6 85 61-147 30-117 (257)
101 2e9g_A AP-1 complex subunit ga 96.3 0.021 7.1E-07 52.2 10.3 86 644-733 21-112 (131)
102 1gyu_A Adapter-related protein 96.0 0.035 1.2E-06 51.2 10.2 86 644-733 30-121 (140)
103 2of3_A ZYG-9; multifunctional 95.7 0.2 7E-06 51.4 15.2 185 78-275 43-242 (266)
104 3u0r_A Apoptosis inhibitor 5; 95.6 1.2 4E-05 49.1 21.6 148 251-401 39-193 (507)
105 3tt9_A Plakophilin-2; cell adh 95.5 0.099 3.4E-06 52.9 12.3 105 46-150 8-125 (233)
106 2iw3_A Elongation factor 3A; a 95.5 0.54 1.8E-05 57.3 20.7 219 47-270 96-325 (986)
107 3l9t_A Putative uncharacterize 95.5 0.31 1.1E-05 48.7 15.3 136 52-198 77-215 (240)
108 1p4u_A ADP-ribosylation factor 95.5 0.061 2.1E-06 50.4 9.6 86 644-733 34-131 (153)
109 1ho8_A Vacuolar ATP synthase s 95.4 4.3 0.00015 44.9 29.1 125 323-451 333-476 (480)
110 4hat_C Exportin-1; heat repeat 95.3 8.3 0.00028 47.6 34.4 161 295-456 435-623 (1023)
111 2iw3_A Elongation factor 3A; a 95.3 5.3 0.00018 48.6 28.0 252 71-338 44-322 (986)
112 3o2t_A Symplekin; heat repeat, 95.2 0.2 6.9E-06 54.2 13.9 147 43-224 26-180 (386)
113 3gjx_A Exportin-1; transport, 95.0 0.5 1.7E-05 58.5 18.6 144 42-188 473-642 (1073)
114 1lrv_A LRV, leucine-rich repea 94.1 0.23 7.7E-06 50.6 10.5 184 54-336 58-242 (244)
115 3tt9_A Plakophilin-2; cell adh 93.6 0.64 2.2E-05 46.9 12.7 105 121-225 9-122 (233)
116 3gjx_A Exportin-1; transport, 93.3 21 0.0007 44.2 33.4 133 10-149 29-178 (1073)
117 3l9t_A Putative uncharacterize 92.6 0.35 1.2E-05 48.3 8.7 140 6-154 68-212 (240)
118 2of3_A ZYG-9; multifunctional 91.8 2.1 7E-05 43.9 13.6 171 12-227 49-236 (266)
119 4gmo_A Putative uncharacterize 91.7 1.2 4.1E-05 52.7 13.6 65 86-151 39-107 (684)
120 1lsh_A Lipovitellin (LV-1N, LV 91.2 0.32 1.1E-05 60.5 8.3 122 21-147 407-541 (1056)
121 3o2t_A Symplekin; heat repeat, 90.4 4.3 0.00015 43.9 15.0 123 26-148 41-182 (386)
122 3a6p_A Exportin-5; exportin-5, 89.0 52 0.0018 41.4 26.0 130 95-226 221-379 (1204)
123 3dad_A FH1/FH2 domain-containi 87.9 15 0.00051 38.6 16.4 83 88-172 125-213 (339)
124 1lsh_A Lipovitellin (LV-1N, LV 86.4 48 0.0017 41.0 22.9 171 74-270 388-577 (1056)
125 3oc3_A Helicase MOT1, MOT1; re 86.3 1.8 6.1E-05 48.5 8.6 229 15-265 180-432 (800)
126 4gmo_A Putative uncharacterize 86.3 1.2 4.1E-05 52.7 8.1 145 51-195 39-219 (684)
127 3gs3_A Symplekin, LD45768P; he 85.8 5.7 0.0002 40.4 11.7 123 26-148 31-172 (257)
128 3oc3_A Helicase MOT1, MOT1; re 83.0 6.2 0.00021 44.3 11.0 131 16-147 270-402 (800)
129 1vsy_5 Proteasome activator BL 77.0 3.3 0.00011 50.8 7.3 102 10-113 761-877 (997)
130 2b6c_A Hypothetical protein EF 77.0 9.1 0.00031 37.9 9.4 149 15-182 61-212 (220)
131 1lrv_A LRV, leucine-rich repea 74.4 3.9 0.00013 41.3 5.9 91 15-144 128-218 (244)
132 1t06_A Hypothetical protein; s 71.2 8.7 0.0003 38.5 7.6 71 56-128 118-196 (235)
133 3ldz_A STAM-1, signal transduc 70.3 27 0.00091 31.8 10.0 94 16-109 12-113 (140)
134 3dad_A FH1/FH2 domain-containi 69.7 1.1E+02 0.0039 32.0 17.8 99 14-112 123-233 (339)
135 3fga_B Serine/threonine-protei 69.3 1.3E+02 0.0044 32.4 17.0 135 351-486 173-317 (403)
136 2b6c_A Hypothetical protein EF 68.5 6.4 0.00022 39.1 5.9 68 51-118 129-196 (220)
137 3zyq_A Hepatocyte growth facto 67.7 32 0.0011 34.0 10.9 94 12-109 11-117 (226)
138 3jxy_A Alkylpurine DNA glycosy 67.5 5.6 0.00019 39.8 5.3 137 13-159 65-205 (232)
139 1x5b_A Signal transducing adap 67.0 27 0.00092 32.7 9.5 98 12-109 17-124 (163)
140 3jxy_A Alkylpurine DNA glycosy 66.8 20 0.0007 35.6 9.3 80 56-144 71-155 (232)
141 2jak_A Serine/threonine-protei 66.3 71 0.0024 34.3 13.7 137 350-487 217-363 (392)
142 1x5b_A Signal transducing adap 63.0 29 0.00099 32.4 8.9 65 86-153 20-84 (163)
143 2npp_B PP2A, B subunit, serine 62.6 1.4E+02 0.0049 32.6 15.6 151 351-502 206-372 (449)
144 3g2s_A C-terminal fragment of 60.8 68 0.0023 29.4 10.8 99 16-114 18-130 (149)
145 1mhq_A ADP-ribosylation factor 55.1 48 0.0016 30.4 8.8 51 100-153 20-70 (148)
146 3ldz_A STAM-1, signal transduc 53.3 42 0.0014 30.4 8.0 52 100-154 24-75 (140)
147 1juq_A ADP-ribosylation factor 53.1 50 0.0017 31.1 8.7 65 84-150 16-80 (171)
148 3g2s_A C-terminal fragment of 52.3 68 0.0023 29.4 9.3 66 86-154 16-81 (149)
149 1dvp_A HRS, hepatocyte growth 51.6 79 0.0027 30.9 10.4 84 24-107 20-112 (220)
150 1mhq_A ADP-ribosylation factor 51.5 68 0.0023 29.3 9.2 89 22-110 14-116 (148)
151 3s4w_B Protein FACD2, fanconi 48.3 5E+02 0.017 32.5 23.0 57 348-404 438-497 (1323)
152 1juq_A ADP-ribosylation factor 47.3 81 0.0028 29.6 9.2 98 16-113 20-131 (171)
153 1vsy_5 Proteasome activator BL 45.1 27 0.00093 42.8 6.9 114 34-147 831-964 (997)
154 1vsy_4 Proteasome activator BL 44.3 1.1E+02 0.0036 36.5 11.7 72 76-148 334-411 (799)
155 2xzz_A Protein-glutamine gamma 43.5 30 0.001 29.5 5.0 60 657-718 19-78 (102)
156 1elk_A Target of MYB1; superhe 41.7 1.1E+02 0.0037 28.2 9.0 67 84-153 19-86 (157)
157 2qc7_A ERP31, ERP28, endoplasm 39.1 69 0.0024 31.9 7.8 60 317-377 135-198 (240)
158 1upk_A MO25 protein; transfera 36.6 3.9E+02 0.013 27.9 20.1 221 81-337 78-332 (341)
159 4flb_A Regulation of nuclear P 34.3 2.2E+02 0.0074 25.0 9.6 32 330-361 22-53 (132)
160 1ho8_A Vacuolar ATP synthase s 31.1 57 0.002 36.0 5.9 59 93-151 417-478 (480)
161 2r39_A FIXG-related protein; s 30.6 1.1E+02 0.0036 26.6 6.7 67 661-731 34-100 (118)
162 1t06_A Hypothetical protein; s 29.3 1.9E+02 0.0066 28.4 9.2 73 286-358 118-198 (235)
163 1elk_A Target of MYB1; superhe 29.3 3.2E+02 0.011 24.9 10.1 99 11-109 17-129 (157)
164 3s51_A Protein FACI, fanconi a 28.0 3.7E+02 0.013 33.4 12.7 242 32-277 349-621 (1308)
165 1yew_A Particulate methane mon 26.3 1.4E+02 0.0049 31.2 7.5 26 650-675 256-281 (382)
166 3tj1_A RNA polymerase I-specif 25.5 6.2E+02 0.021 28.9 13.4 91 307-398 132-224 (649)
167 2c0g_A ERP29 homolog, windbeut 25.5 1.9E+02 0.0064 28.8 8.3 59 318-378 150-213 (248)
168 1hu3_A EIF4GII; heat repeat, t 24.9 5.2E+02 0.018 25.6 14.3 48 405-452 148-199 (260)
169 3ndz_E Endoglucanase D; cellot 24.7 3.2E+02 0.011 23.2 8.5 38 646-683 2-40 (107)
170 3qml_C Protein SLS1, nucleotid 22.9 4.6E+02 0.016 27.0 10.4 26 92-117 81-106 (315)
171 4atg_A TAF6; transcription, TF 21.4 5.3E+02 0.018 24.5 11.0 118 298-415 27-162 (196)
172 2e6j_A Hydin protein; PAPD, st 21.1 76 0.0026 27.0 3.8 57 655-714 23-81 (112)
173 3rfr_A PMOB; membrane, oxidore 21.1 1.7E+02 0.0057 31.1 6.8 25 650-674 290-314 (419)
174 3d9j_A RNA-binding protein 16; 20.8 4.6E+02 0.016 23.5 9.8 35 327-361 21-55 (145)
175 3eg5_B Protein diaphanous homo 20.7 5.7E+02 0.02 27.1 11.5 68 253-320 133-210 (383)
176 1upk_A MO25 protein; transfera 20.7 7.3E+02 0.025 25.8 17.1 102 89-223 172-279 (341)
177 1dvp_A HRS, hepatocyte growth 20.6 2.5E+02 0.0086 27.2 8.0 50 100-151 24-73 (220)
178 1h2v_C 80 kDa nuclear CAP bind 20.3 9.8E+02 0.034 28.0 14.2 74 298-372 14-89 (771)
No 1
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=100.00 E-value=4.2e-87 Score=793.18 Aligned_cols=544 Identities=74% Similarity=1.173 Sum_probs=514.5
Q ss_pred CCCCCCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHH
Q 002971 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (862)
Q Consensus 1 mt~G~dvs~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~ 80 (862)
|++|+|++++|++++++++++|+++||+||+|++.+++.+||++++++|+|+|||+|+||.+|++||++||+++.+++++
T Consensus 41 ~~~G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~ 120 (591)
T 2vgl_B 41 MTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITE 120 (591)
T ss_dssp HHTTCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHH
T ss_pred HHCCCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCC-ccccc
Q 002971 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP-IFEIT 159 (862)
Q Consensus 81 ~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~-~~~l~ 159 (862)
++.+.|++++.|++|||||+|+.|+.++++.+|+.+++.+|++.+.++|+|+|++|+.+|+.+|.+|+.++++. .+.+.
T Consensus 121 ~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~ 200 (591)
T 2vgl_B 121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLN 200 (591)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhcc
Confidence 99999999999999999999999999999999999987679999999999999999999999999999987765 57788
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhcc-CChHHHHHH
Q 002971 160 SHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELI-TSTDVVRNL 238 (862)
Q Consensus 160 ~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~-~~~~~~~~~ 238 (862)
+..+.+|++.+.+++||+|+++|++|..|.+.++++...+++.+.++++|.|++|+++|+++++++.+.+ .+++.++.+
T Consensus 201 ~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~ 280 (591)
T 2vgl_B 201 PQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML 280 (591)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH
T ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH
Confidence 8889999999999999999999999999999998888999999999999999999999999999975433 245667767
Q ss_pred HHhcccchhhcccCChhHHHHHHHHHHHHHhhChhhhhccceEEEecCCCcHHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q 002971 239 CKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKE 318 (862)
Q Consensus 239 ~~~~~~~L~~lls~~~~iry~aL~~l~~i~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~ 318 (862)
..++.++|++++++++|+||+||++|..+++.+|+.+.+|++.|+|+.+||.+||++|+++|+.|++++|++.|++||.+
T Consensus 281 ~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~ 360 (591)
T 2vgl_B 281 LKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKE 360 (591)
T ss_dssp HHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHH
Confidence 77788888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCcccHHHHHHHHHHhhccCC
Q 002971 319 YATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLD 398 (862)
Q Consensus 319 y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~ 398 (862)
|+.+.|.++|++++++||.||.+|++.++||+++|+++++..++++.+++|.++++|++++|+.+++++..|++.++++.
T Consensus 361 ~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~ 440 (591)
T 2vgl_B 361 YATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLD 440 (591)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCC
T ss_pred HHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhcccccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcccCCCChHH
Q 002971 399 EPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDL 478 (862)
Q Consensus 399 ~~~~~~~~~wilGEy~~~i~~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~~~~~~~~~i~~~l~~~~~~s~~~dv 478 (862)
+|+++++++|++||||+.+++++++++.++++|.++++.||.++|+|++|++.+.|++ .++.++++|+.+..++.|+||
T Consensus 441 ~~~~~~~~~wilGey~~~~~~~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~-~~~~i~~ll~~~~~d~~d~ev 519 (591)
T 2vgl_B 441 EPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE-TQELVQQVLSLATQDSDNPDL 519 (591)
T ss_dssp SHHHHHHHHHHHHTTCTTCTTHHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST-THHHHHHHHHHHHTTCCCHHH
T ss_pred CHHHHHHHHHHHHcccccccCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchH-HHHHHHHHHHHhhhcCCChHH
Confidence 9999999999999999999999999999999999999999999999999999999975 668999999998777899999
Q ss_pred HHHHHHHHHHhcCCHHHHHHhhccCCCCCCCCCccCChhHHHHHHHhcCcccccccCCcchhccccc
Q 002971 479 RDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVK 545 (862)
Q Consensus 479 rdRA~~y~~ll~~~~~~~~~~v~~~~p~~~~~~~~~~~~ll~~l~~~~~~~~~vy~~~~~~~~~~~~ 545 (862)
||||++||+||+.+++.++++|+++||+++.+.+..+++++++|+.++||+|++|+||++.|+++.+
T Consensus 520 rdRA~~y~~ll~~~~~~~~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~~~ 586 (591)
T 2vgl_B 520 RDRGYIYWRLLSTDPVTAKEVVLSEKPLISEETDLIEPTLLDELICHIGSLASVYHKPPNAFVEGSH 586 (591)
T ss_dssp HHHHHHHHTTTTTCTTHHHHHHTSCCCCCCSCSSCCCHHHHHHHHTTTTSSHHHHTSCGGGCC----
T ss_pred HHHHHHHHHHHCcCHHHHHHHHcCCCCCCCCCccccCHHHHHHHHHHhCcchhhhcCCHHHHcCCcc
Confidence 9999999999998888999999999999999888899999999999999999999999999987644
No 2
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=100.00 E-value=2.5e-82 Score=751.92 Aligned_cols=509 Identities=20% Similarity=0.310 Sum_probs=444.1
Q ss_pred CCCCCCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHH
Q 002971 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (862)
Q Consensus 1 mt~G~dvs~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~ 80 (862)
|++|+|++++|++|+++++|+|+++||+||||++.|++.+||+++|+||+|+|||+|+||++||+|||+||+|+++++++
T Consensus 66 ~~~G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~ 145 (621)
T 2vgl_A 66 FLLGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAE 145 (621)
T ss_dssp HHHSCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHcCCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh--CCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccc
Q 002971 81 YLCDPLQRCL--KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI 158 (862)
Q Consensus 81 ~l~~~v~~~l--~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l 158 (862)
++.++|++++ .|++|||||+|++|++|+|+++|+.++..+|.+.+.++|+|+|++|+.+|+.++.+|+++++..+..+
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~ 225 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTS 225 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHH
Confidence 9999999999 99999999999999999999999999855799999999999999999999999999999876544444
Q ss_pred cHHHHHHHHHHhc--cC-----------ChhHHHHHHHHHhhcccc-cHHHHHHHHH---HHHH---------hhcCCCh
Q 002971 159 TSHTLSKLLTALN--EC-----------TEWGQVFILDALSRYKAA-DAREAENIVE---RVTP---------RLQHANC 212 (862)
Q Consensus 159 ~~~~~~~Ll~~l~--~~-----------~~w~q~~iL~~L~~~~~~-~~~~~~~il~---~v~~---------~l~~~n~ 212 (862)
.+..++.|.+.+. ++ +||+|+++|++|+.|.+. +++..+.+.+ .+.. .++|.|+
T Consensus 226 ~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~ 305 (621)
T 2vgl_A 226 VSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNA 305 (621)
T ss_dssp HHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccch
Confidence 5555554544432 24 799999999999999985 4555444433 3332 3456666
Q ss_pred --HHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhCh--hhhhccce-EEEecC
Q 002971 213 --AVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRP--TILAHEIK-VFFCKY 286 (862)
Q Consensus 213 --aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p--~~~~~~~~-~~~~l~ 286 (862)
||+|||+++++++. ++++.++. ++..|..++ ++++|+||++|++|..+++.+| ..++.|.. ++.|+.
T Consensus 306 ~~aVl~ea~~~i~~l~---~~~~~~~~----~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~ 378 (621)
T 2vgl_A 306 KNAVLFEAISLIIHHD---SEPNLLVR----ACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALK 378 (621)
T ss_dssp HHHHHHHHHHHHHHHC---CCHHHHHH----HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcC---CcHHHHHH----HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhc
Confidence 99999999999973 35555543 455677777 5899999999999999999986 67888877 456787
Q ss_pred -CCcHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhcchhH
Q 002971 287 -NDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVV 365 (862)
Q Consensus 287 -~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~ 365 (862)
++|.+||++||++|+.|+|++|++.|++||++|+.+.|.+|+++++++||.||+||+++++||+++|+++++.+|+++.
T Consensus 379 ~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~ 458 (621)
T 2vgl_A 379 TERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVS 458 (621)
T ss_dssp TCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSC
T ss_pred cCCCHhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccch
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHhhccCCchHH-HHHHHHHHhhcccccCC-----HHHHHHHHhhhCCCCCHHHH
Q 002971 366 QEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEA-KASMIWIIGEYAERIDN-----ADELLESFLESFPEEPAQVQ 439 (862)
Q Consensus 366 ~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~-~~~~~wilGEy~~~i~~-----~~~~l~~~~~~~~~e~~~v~ 439 (862)
+|+|.++++++.++|+.|++++.+|++.+++....+. ..+++|++||||+.+.+ +.++++.+.++|..+++.||
T Consensus 459 ~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~ 538 (621)
T 2vgl_A 459 EEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTR 538 (621)
T ss_dssp SHHHHHHHHHHGGGCSCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHH
Confidence 9999999999999999999999999999876543332 35667999999998875 45999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHhccc-CCCChHHHHHHHHHHHHhcCCHHHHHHhhccCCCCCCCCCccCChhH
Q 002971 440 LQLLTATVKLFLKKPTEGPQQMIQVVLNNATV-ETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSL 518 (862)
Q Consensus 440 ~~iLta~~Kl~~~~~~~~~~~~i~~~l~~~~~-~s~~~dvrdRA~~y~~ll~~~~~~~~~~v~~~~p~~~~~~~~~~~~l 518 (862)
+++|||++|++.+.|+ .++.++.+|+.++. ++.|+||||||+|||+||+.+++.++++++++||+|+++. +.+
T Consensus 539 ~~~Lta~~Kl~~~~p~--~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~~~~~~~~~vl~~~P~~~~~~----~~l 612 (621)
T 2vgl_A 539 ALLLSTYIKFVNLFPE--VKATIQDVLRSDSQLKNADVELQQRAVEYLRLSTVASTDILATVLEEMPPFPERE----SSI 612 (621)
T ss_dssp HHHHHHHHHHHHHCGG--GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHHSSCSTTTTTTSSSCCCCCCC--------
T ss_pred HHHHHHHHHHHHHChH--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHccCHHHHHHHHhhcCCCCCCcc----hHH
Confidence 9999999999999986 68899999998875 4789999999999999999877788999999999998653 467
Q ss_pred HHHH
Q 002971 519 LDEL 522 (862)
Q Consensus 519 l~~l 522 (862)
+++|
T Consensus 613 l~~l 616 (621)
T 2vgl_A 613 LAKL 616 (621)
T ss_dssp ----
T ss_pred HHHH
Confidence 7775
No 3
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=1.2e-75 Score=697.15 Aligned_cols=502 Identities=20% Similarity=0.277 Sum_probs=431.0
Q ss_pred CCCCCCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHH
Q 002971 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (862)
Q Consensus 1 mt~G~dvs~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~ 80 (862)
|++|+|++++|++|+++++|+|+++||+||||++.|++.+||+++|+||+|+|||+|+||++|++|||+||+|+.+++++
T Consensus 62 ~~~G~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~ 141 (618)
T 1w63_A 62 HMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCR 141 (618)
T ss_dssp HHTTCCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHH
T ss_pred HHcCCCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccH
Q 002971 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (862)
Q Consensus 81 ~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~ 160 (862)
++.+.|.+++.|++|||||+|++|++++|+.+|+.++ +|++.+.++|+|+|++|+.+|+.+|.+|+.+++.. .....
T Consensus 142 ~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~--~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~ 218 (618)
T 1w63_A 142 DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME--MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM-LAHFR 218 (618)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG--GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH-HHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH--HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH-HHHHH
Confidence 9999999999999999999999999999999999987 49999999999999999999999999998765421 00111
Q ss_pred HHHHHHHHHhcc---------------CChhHHHHHHHHHhhcccccHHHHHHH---HHHHHH---hhcCCChHHHHHHH
Q 002971 161 HTLSKLLTALNE---------------CTEWGQVFILDALSRYKAADAREAENI---VERVTP---RLQHANCAVVLSAV 219 (862)
Q Consensus 161 ~~~~~Ll~~l~~---------------~~~w~q~~iL~~L~~~~~~~~~~~~~i---l~~v~~---~l~~~n~aV~~eai 219 (862)
+.+..+++.|.+ .+||+|+.++++|+.|.+.+++..+.+ +..+.+ .++|.+.+|+++|+
T Consensus 219 ~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~ 298 (618)
T 1w63_A 219 KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETV 298 (618)
T ss_dssp TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 223334443332 489999999999999998887655544 434432 23566779999999
Q ss_pred HHHHHhhhccCChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhChhhhhccce-EEEecCCCcHHHHHHHH
Q 002971 220 KMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIK-VFFCKYNDPIYVKMEKL 297 (862)
Q Consensus 220 ~~i~~~~~~~~~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~~~~~~~~-~~~~l~~d~~~Ik~~~L 297 (862)
++++++. .++.... .++++|+.++ ++++|+||+||++|..+++.+|..+.+|.. +|+|++++|.+||++|+
T Consensus 299 ~~i~~l~---~~~~l~~----~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~al 371 (618)
T 1w63_A 299 LTIMDIK---SESGLRV----LAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAM 371 (618)
T ss_dssp HHHHHSC---CCHHHHH----HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHH
T ss_pred HHHHhcC---CCHHHHH----HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHH
Confidence 9999862 2343322 2455677777 579999999999999999999999999875 78899999999999999
Q ss_pred HHHHHhcCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHH
Q 002971 298 EIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFR 377 (862)
Q Consensus 298 ~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~ 377 (862)
++|+.|++++|++.|++||.+|+.+.|.+||++++.+||.||.+|+++..||+++++++++..++++.+++|.+++++++
T Consensus 372 elL~~l~~~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~ 451 (618)
T 1w63_A 372 ELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLIT 451 (618)
T ss_dssp HHHHHHCCSSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCcccHHHHHHHHHHhhcc-CCchHHHHHHHHHHhhcccccCC---------------HHHHHHHHhhhCCCCCHHHHHH
Q 002971 378 RYPNTYESIIATLCESLDT-LDEPEAKASMIWIIGEYAERIDN---------------ADELLESFLESFPEEPAQVQLQ 441 (862)
Q Consensus 378 ~~p~~~~~~i~~L~~~l~~-~~~~~~~~~~~wilGEy~~~i~~---------------~~~~l~~~~~~~~~e~~~v~~~ 441 (862)
++|+.+++++..|++.+++ +.......+++|++||||+.+.+ ..++++.+++.| .+++.||++
T Consensus 452 ~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~vr~~ 530 (618)
T 1w63_A 452 NSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN-MSTSVTRGY 530 (618)
T ss_dssp HSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST-TCCHHHHHH
T ss_pred cChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc-CCCHHHHHH
Confidence 9999999999999999974 33333345689999999987643 346677777777 789999999
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHhcccCCCChHHHHHHHHHHHHhcCCHHHHHHhhccCCCCCCCCCccCChh
Q 002971 442 LLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPS 517 (862)
Q Consensus 442 iLta~~Kl~~~~~~~~~~~~i~~~l~~~~~~s~~~dvrdRA~~y~~ll~~~~~~~~~~v~~~~p~~~~~~~~~~~~ 517 (862)
+|||++|++.++|+ .++.++.+|+.+. ++.|+||||||++||+||+.++ .++++++++||+|++..+...++
T Consensus 531 ~lta~~Kl~~~~~~--~~~~l~~~L~~~~-~~~d~evrdRA~~y~~ll~~~~-~~~~~vl~~~P~~~~~~~~~~~~ 602 (618)
T 1w63_A 531 ALTAIMKLSTRFTC--TVNRIKKVVSIYG-SSIDVELQQRAVEYNALFKKYD-HMRSALLERMPVMEKVTTNGPSE 602 (618)
T ss_dssp HHHHHHHHHTTCSS--CHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTT-THHHHHHSCCCCCCC--------
T ss_pred HHHHHHHHHHhCcc--hHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHcCcH-HHHHHHhhcCCCCCccccCCccc
Confidence 99999999999996 5889999999875 6789999999999999998755 47788999999998765444333
No 4
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=100.00 E-value=1.8e-49 Score=430.07 Aligned_cols=289 Identities=16% Similarity=0.250 Sum_probs=205.2
Q ss_pred CCCCCC-----cccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCCh
Q 002971 1 MTVGKD-----VSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRV 75 (862)
Q Consensus 1 mt~G~d-----vs~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~ 75 (862)
|+.|++ ++.+|++|+|+++|+|+++|||||||++.|++..+| ++|+||+|+||++|+||++||+|||+||+|+.
T Consensus 55 ~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e-~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~ 133 (355)
T 3tjz_B 55 INQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED-VIIVTSSLTKDMTGKEDSYRGPAVRALCQITD 133 (355)
T ss_dssp HHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC-GGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCC
T ss_pred HHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCC
Confidence 567888 789999999999999999999999999999999555 78999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCc
Q 002971 76 DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPI 155 (862)
Q Consensus 76 ~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~ 155 (862)
++|++++.+++++++.|++|||||+|++|++|++..+||.++ +|++.+.++++|+||+|+++|+.+|++|+++++
T Consensus 134 ~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~--~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--- 208 (355)
T 3tjz_B 134 STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK--RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR--- 208 (355)
T ss_dssp TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH---
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH--HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch---
Confidence 999999999999999999999999999999999999999997 499999999999999999999999999987652
Q ss_pred ccccHHHHHHHHHHhccC---ChhHHHHHHHHHhhccccc-HHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCC
Q 002971 156 FEITSHTLSKLLTALNEC---TEWGQVFILDALSRYKAAD-AREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITS 231 (862)
Q Consensus 156 ~~l~~~~~~~Ll~~l~~~---~~w~q~~iL~~L~~~~~~~-~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~ 231 (862)
..+.+|+..+.++ +||+|+.+++++.+|.+.+ +++.+.+++.+.+.|+|.|++|+|||+++|+.+.+ .
T Consensus 209 -----~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~-- 280 (355)
T 3tjz_B 209 -----LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-C-- 280 (355)
T ss_dssp -----HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC-------
T ss_pred -----HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-C--
Confidence 3567777777664 7999999999999999988 67788999999999999999999999999997632 1
Q ss_pred hHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhChhhhhccce-EEEecCCCcHHHHHHHHHHHHHhcCc
Q 002971 232 TDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASD 306 (862)
Q Consensus 232 ~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~~~~~~~~-~~~~l~~d~~~Ik~~~L~lL~~l~~~ 306 (862)
+.. ....++.+|..++ ++++|+||+||++|.++++++|++++.|.. +..|+.|.+.+|+..|+..|.+.++|
T Consensus 281 ~~~---~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~sI~t~Aittllktg~e 354 (355)
T 3tjz_B 281 SAK---ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLAITTLLKTGSE 354 (355)
T ss_dssp ----------CCCTHHHHHHSSSSSSHHHHHHCC-------------------------------------------
T ss_pred CHH---HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccCCcHhHHHHHHHHhhhccCC
Confidence 111 1224677787777 689999999999999999999999998865 66789899999999999999998876
No 5
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=100.00 E-value=2.7e-37 Score=318.55 Aligned_cols=230 Identities=35% Similarity=0.582 Sum_probs=215.6
Q ss_pred CCCCccccccCCCCCceEEEEEEEeeCCeeEEEEEEEecCCCCcccceeeecccccCcccCCCCCC-CcCCCCCeeeEEE
Q 002971 631 PVPALPVVLPASTGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQV-PQLQPGTSGRTLL 709 (862)
Q Consensus 631 ~~~~~~~l~~~~~~~gL~I~~~~~~~~~~~~l~l~~~N~s~~~it~f~~q~~~n~~gl~~~~~~~~-~~l~pg~~~~~~i 709 (862)
+.+|+.+|+++.+|+||+|.++|.|+++++.++|+|+|+++++|++|++|+|+|+||+.|..+..+ ++|+|||+.++.+
T Consensus 28 ~~~p~~~~l~~~~g~GLeI~g~f~r~~g~i~l~l~~~N~s~~~is~faIQfNkNsFGL~p~~~~~~~~~L~pgqs~~v~l 107 (258)
T 2g30_A 28 YVAPKAVWLPAVKAKGLEISGTFTHRQGHIYMEMNFTNKALQHMTDFAIQFNKNSFGVIPSTPLAIHTPLMPNQSIDVSL 107 (258)
T ss_dssp CCCCCEEEECGGGTTTEEEEEEEEEETTEEEEEEEEEECSSSCBCCCEEEECCBTTCCEESSCCCCCSCBCTTCEEEEEE
T ss_pred CCCchhhcccccCCCcEEEEEEEEEeCCEEEEEEEEecCCccceeeeEEEEcccccCcccCccccCCCccCCCCcEEEEE
Confidence 346778999999999999999999999999999999999999999999999999999999988777 4899999999999
Q ss_pred eeeecCCCCCCCCCcceEEEEecCCCCeEEEEeccccccccccCCCCChHHHHHHhccCCCCccceeecCCCccCCHHHH
Q 002971 710 PMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEVLKDLPGVVVSNVEAT 789 (862)
Q Consensus 710 ~i~~~~~~~~~~~~~~l~~~~k~~~~~~~~~~l~~Pl~~l~~~~~~~~~~~F~~~W~~l~~~~E~~~~~~~~~~~~~~~~ 789 (862)
++.++++.+..+|...||||+|++.+ +|||++++|++.+|.+.++|++++|.+.|+.|++++|.+.++.... .+.+++
T Consensus 108 pl~~~~~~~~~~p~~~LQVAIKtn~~-vfYF~~~ipl~~l~~e~g~m~~~~F~~~Wk~ip~~nE~~~~i~~~~-~~~~~i 185 (258)
T 2g30_A 108 PLNTLGPVMKMEPLNNLQVAVKNNID-VFYFSCLIPLNVLFVEDGKMERQVFLATWKDIPNENELQFQIKECH-LNADTV 185 (258)
T ss_dssp EEESCSCBCCCSSTTEEEEEEECSSC-EEEEEEECCGGGGBCSCCCCCHHHHHHHHHHSCGGGCEEEEETTCC-CCHHHH
T ss_pred eeecCCcccCCCCCchheeeeecCCc-eEEEEeecCHHHhcCCcCccCHHHHHHHHhhCCCccceeEecccCc-CCHHHH
Confidence 99999988877777789999999985 9999999999999999999999999999999999999999988663 778999
Q ss_pred HHHHHhcCceeeeeccCCCCceEEEEEEecCCccEEEEEEeecCCCceEEEEecCCCchHHHHHHHHHHHHhC
Q 002971 790 LDLLAASNMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCAIKTPNPDIASLFFEAIETLLKA 862 (862)
Q Consensus 790 ~~~l~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~~L~~l~~~~~~~~~~ltvrs~~~~v~~~l~~~i~~~l~~ 862 (862)
.++|++.|+|.|+++.++|++++||+++++++.++|++++++.+++.+++++||+++.+++++.+++..+|++
T Consensus 186 ~~kL~~~nif~Va~r~~~~q~~ly~S~kt~n~i~vL~el~~~~~~~~v~l~vks~~~~i~~li~~~~~~~l~~ 258 (258)
T 2g30_A 186 SSKLQNNNVYTIAKRNVEGQDMLYQSLKLTNGIWILAELRIQPGNPNYTLSLKCRAPEVSQYIYQVYDSILKN 258 (258)
T ss_dssp HHHHHHTTCEEEEEEEETTEEEEEEEEEBTTSCEEEEEEEECSSCSSEEEEEEESSGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHCCeEEEEeecCCCCceEEEEEEccCCcEEEEEEEEccCCCcEEEEEecCCchHHHHHHHHHHHHhhC
Confidence 9999999999999988889999999999999999999999988767899999999999999999999999986
No 6
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus}
Probab=99.96 E-value=1.2e-28 Score=256.18 Aligned_cols=230 Identities=14% Similarity=0.153 Sum_probs=189.5
Q ss_pred ccCCCCCCCCC--CCccccccCCCCCceEEEEEEEeeCCeeEEEEEEEecCCCCcccceeeecccc---cCcccCCCCCC
Q 002971 622 VPADQAAASPV--PALPVVLPASTGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNT---FGLAAGGALQV 696 (862)
Q Consensus 622 ~p~~~~~~~~~--~~~~~l~~~~~~~gL~I~~~~~~~~~~~~l~l~~~N~s~~~it~f~~q~~~n~---~gl~~~~~~~~ 696 (862)
.|.|..++.++ .+.+++|++ ..|||+++.+++++++++.|+|+||++++|++|++++..+. .++.....+..
T Consensus 33 ~~~~~~~f~rll~~~~GVLyED---~~IQIg~kse~~~~~g~i~L~~gNKs~~~it~f~~~i~~~~~~~~~l~~~~~~~~ 109 (273)
T 3hs8_A 33 GSEFEDNFARFVCKNNGVLFEN---QLLQIGLKSEFRQNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVD 109 (273)
T ss_dssp ---CEECGGGGSSCSCEEEEEC---SSEEEEEEEEEETTEEEEEEEEEECSSSCBBSCCCEEECCTTHHHHEEEEECCCC
T ss_pred CchHHHHHHhheEcCCcEEEeC---CcEEEEEEEEEeCceEEEEEEEEcCCCCcceeEEEEEECCCCCCcceEEEecCCC
Confidence 56788887764 478999995 56999999999999999999999999999999999987542 24444333223
Q ss_pred CcCCCCCeeeEEEeeeecCCCCCCCCCcceEEEEecCCCCeEEEEecccc-ccccccCCCCChHHHHHHhccCCC-Cccc
Q 002971 697 PQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISL-HVLFTEDGRMERGSFLETWRSLPD-SNEV 774 (862)
Q Consensus 697 ~~l~pg~~~~~~i~i~~~~~~~~~~~~~~l~~~~k~~~~~~~~~~l~~Pl-~~l~~~~~~~~~~~F~~~W~~l~~-~~E~ 774 (862)
++|+||+++++.+.++|+++|.. +|.+.+.|.|+++.. .+++++|+ ...|+++..|+.++|++||++|++ .+|.
T Consensus 110 ~tI~p~~q~qq~i~v~~~~pF~~-~P~l~isf~~~g~~~---~~~LkLPi~~~kf~~p~~~~~~~F~~rWkql~~~~~E~ 185 (273)
T 3hs8_A 110 PTVDGGAQVQQVVNIECISDFTE-APVLNIQFRYGGTFQ---NVSVKLPITLNKFFQPTEMASQDFFQRWKQLSNPQQEV 185 (273)
T ss_dssp SCBCTTCEEEEEEEEEECSCCCC-CCEEEEEEEETTEEE---EEEEECCCCGGGGEEECCCCHHHHHHHHHHCCSGGGEE
T ss_pred CeECCCCEEEEEEEEEEcccccC-CCEEEEEEEECCeEE---EEEEecceehhheeccccCCHHHHHHHHHhcCCCCceE
Confidence 59999999999999999999976 457778887766544 77888884 334667889999999999999996 5899
Q ss_pred eeecCCCccCCHHHHHHHHHhcCceeeeeccCCCCceEEEEEEec---CCccEEEEEEeecCCCceEEEEecCCCchHHH
Q 002971 775 LKDLPGVVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIP---PGVPFLIELTTVIGNPGVKCAIKTPNPDIASL 851 (862)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~s~~~~---~~~~~L~~l~~~~~~~~~~ltvrs~~~~v~~~ 851 (862)
+..+....+.+.+++.+.+.++|+.++. +.|||+++++.|+.+. ++++||+|++++.+++.++|||||++++++..
T Consensus 186 q~v~~~~~~~~~~~v~~~l~~lg~~vl~-g~Dpn~~n~v~AGi~~t~~g~~gcLvRle~n~~~~~~rlTVRSt~~~vs~~ 264 (273)
T 3hs8_A 186 QNIFKAKHPMDTEITKAKIIGFGSALLE-EVDPNPANFVGAGIIHTKTTQIGCLLRLEPNLQAQMYRLTLRTSKDTVSQR 264 (273)
T ss_dssp EEEEECSSCCCHHHHHHHHHHHTCEECT-TSSSSTTSEEEEEEEECSSCEEEEEEEEEEETTTTEEEEEEEESSHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHhCCeEEeC-CCCCCcccEEEEEEEEeCCCCEEEEEEEEEcccCCEEEEEEEECChhHHHH
Confidence 9888776667889999999999999986 5888887776666665 68999999999976789999999999999999
Q ss_pred HHHHHHHH
Q 002971 852 FFEAIETL 859 (862)
Q Consensus 852 l~~~i~~~ 859 (862)
|++++.+.
T Consensus 265 i~~~i~~~ 272 (273)
T 3hs8_A 265 LCELLSEQ 272 (273)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhh
Confidence 99999764
No 7
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A
Probab=99.95 E-value=1.7e-27 Score=245.86 Aligned_cols=220 Identities=15% Similarity=0.170 Sum_probs=181.4
Q ss_pred CCccccccCCCCCceEEEEEEEeeCCeeEEEEEEEecCCCCcccceeeecccc---cCcccCCCCCCCcCCCCCeeeEEE
Q 002971 633 PALPVVLPASTGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNT---FGLAAGGALQVPQLQPGTSGRTLL 709 (862)
Q Consensus 633 ~~~~~l~~~~~~~gL~I~~~~~~~~~~~~l~l~~~N~s~~~it~f~~q~~~n~---~gl~~~~~~~~~~l~pg~~~~~~i 709 (862)
.+.|++|++ ..|||+++.+++++.+++.++|+||++++|++|++++..+. .++..+..+..++|+||+++++.+
T Consensus 20 ~~~GVLyEd---~~iQIg~kse~~~~~gri~l~~gNKs~~~l~~f~~~i~~~~~~~~~l~~~~~~~~~~I~~~~q~qq~i 96 (247)
T 1kyf_A 20 KNNGVLFEN---QLLQIGLKSEFRQNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQVQQVV 96 (247)
T ss_dssp CCCEEEEEC---SSEEEEEEEEEETTEEEEEEEEEECSSSCBEEEEEEEECCHHHHHHEEEEECCCCSCBCTTCEEEEEE
T ss_pred cCceEEEEC---CCEEEEEEEEEeCCeEEEEEEEEcCCCCceeeEEEEEecCcccCCCeeEecCCCCceeCCCcEEEEEE
Confidence 468899995 56999999999999999999999999999999999987532 134433333344899999999999
Q ss_pred eeeecCCCCCCCCCcceEEEEecCCCCeEEEEeccc-cccccccCCCCChHHHHHHhccCCC-CccceeecCCCccCCHH
Q 002971 710 PMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKIS-LHVLFTEDGRMERGSFLETWRSLPD-SNEVLKDLPGVVVSNVE 787 (862)
Q Consensus 710 ~i~~~~~~~~~~~~~~l~~~~k~~~~~~~~~~l~~P-l~~l~~~~~~~~~~~F~~~W~~l~~-~~E~~~~~~~~~~~~~~ 787 (862)
.++|.++|.+.| .+.+.|.+.+... .+++++| +-..|++|..|+.++|++||+++++ .+|.+..++...+++..
T Consensus 97 ~v~~~~~f~~~P-~l~isf~~~g~~~---~~~LkLPi~l~KF~~p~~~~~~~Ff~rW~~l~~~~~E~q~~f~~~~~~~~~ 172 (247)
T 1kyf_A 97 NIECISDFTEAP-VLNIQFRYGGTFQ---NVSVKLPITLNKFFQPTEMASQDFFQRWKQLSNPQQEVQNIFKAKHPMDTE 172 (247)
T ss_dssp EEEECSCCCCCC-EEEEEEEETTEEE---EEEEECCCCGGGGEEECCCCHHHHHHHHTTCCSGGGEEEEEEECSSCCCHH
T ss_pred EEEEccccCCCC-EEEEEEEECCeee---EEEEecCcEEEEeecCCcCCHHHHHHHHHhccCCCceeEEEeccCCCcCHH
Confidence 999999998754 6677777776544 7788888 3444557999999999999999998 58999998887778888
Q ss_pred HHHHHHHhcCceeeeeccCCCCceEEEEEEec---CCccEEEEEEeecCCCceEEEEecCCCchHHHHHHHHHHHH
Q 002971 788 ATLDLLAASNMFFIAKRKNANQDVFYFSAKIP---PGVPFLIELTTVIGNPGVKCAIKTPNPDIASLFFEAIETLL 860 (862)
Q Consensus 788 ~~~~~l~~~~~~~v~~~~~~~~~~~~~s~~~~---~~~~~L~~l~~~~~~~~~~ltvrs~~~~v~~~l~~~i~~~l 860 (862)
.+...+.++|+.++. ++|||+++++.|+.+. +++|||+|+|++.++++|||||||+++.++..+++++.+.|
T Consensus 173 ~~~~~l~gf~~~vl~-~vDpn~~niv~agi~~t~~~~~gcLlRlE~n~~~~~~rltvRss~~~vs~~l~~ll~~~~ 247 (247)
T 1kyf_A 173 ITKAKIIGFGSALLE-EVDPNPANFVGAGIIHTKTTQIGCLLRLEPNLQAQMYRLTLRTSKDTVSQRLCELLSEQF 247 (247)
T ss_dssp HHHHHHHHHTSEEEC-SSSSSTTSEEEEEEEECSSCEEEEEEEEEEETTTTEEEEEEEESSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCeEEee-CCCCCcCcEEEEEEEEcCCCcEEEEEEEEEcCcCCEEEEEEEECChHHHHHHHHHHHhhC
Confidence 999999999987775 7899998765544432 36999999999987778999999999999999999988653
No 8
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.73 E-value=1.9e-15 Score=178.29 Aligned_cols=479 Identities=13% Similarity=0.093 Sum_probs=324.1
Q ss_pred ccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcH--HHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---hhhhHHHH
Q 002971 8 SSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDL--AILAVNTFVKDSQDPNPLIRALAVRTMGCIR---VDKITEYL 82 (862)
Q Consensus 8 s~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el--~~L~intl~kDl~~~n~~ir~lALr~l~~i~---~~~~~~~l 82 (862)
..+++.+..++.+++...|..+--.+..++...++- .-.+...+.+=..++++.+|..|.+.++.+. ...+.+.+
T Consensus 86 ~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l 165 (588)
T 1b3u_A 86 HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAEL 165 (588)
T ss_dssp GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 445566666777888899999988888888766542 1123444444446778999999888777553 35566788
Q ss_pred HHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHH
Q 002971 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHT 162 (862)
Q Consensus 83 ~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~ 162 (862)
.+.+.+++.|+++.||+.|+.++.++.+..+.......+++.+..+++|.++.|...|+.+|..++...+.. ......
T Consensus 166 ~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~ 243 (588)
T 1b3u_A 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--DLEALV 243 (588)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--HHHHHT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--HHHHHH
Confidence 889999999999999999999999998765532111247888999999999999999999998887764321 111122
Q ss_pred HHHHHHHhccCChhHHHHHHHHHhhcccc-cH-HHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHHH
Q 002971 163 LSKLLTALNECTEWGQVFILDALSRYKAA-DA-REAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK 240 (862)
Q Consensus 163 ~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~-~~-~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~ 240 (862)
+..+...+.+.++..+....+.|..+... .+ .....+++.+...+++.++.|.-.|+.++..+...+...........
T Consensus 244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 323 (588)
T 1b3u_A 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 323 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHH
Confidence 33333444455544566666666655432 11 12245677777888888899998888888776544332211011222
Q ss_pred hcccchhhcc-cCChhHHHHHHHHHHHHHhhChh-hhhccce-EE-EecCCCcHHHHHHHHHHHHHhcCcCc----HHHH
Q 002971 241 KMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPT-ILAHEIK-VF-FCKYNDPIYVKMEKLEIMIKLASDRN----IDQV 312 (862)
Q Consensus 241 ~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~-~~~~~~~-~~-~~l~~d~~~Ik~~~L~lL~~l~~~~N----v~~I 312 (862)
.+.+.+..++ +.++.+|..++..|..++...+. .+.+++. .| .++.+++..+|..+++.|..++..-. .+.+
T Consensus 324 ~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~ 403 (588)
T 1b3u_A 324 QILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSL 403 (588)
T ss_dssp THHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 3455556666 45788999999998888754322 2222221 22 23456668999999988777765322 4567
Q ss_pred HHHHHHhhhhccHHHHHHHHHHHHHHHHhhhHh--HHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCcc--cHHHHHH
Q 002971 313 LLEFKEYATEVDVDFVRKAVRAIGRCAIKLERA--AERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPN--TYESIIA 388 (862)
Q Consensus 313 v~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~--~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~--~~~~~i~ 388 (862)
+..|.+++.+.+..+|..++..++.++..+... .+..+..++.++......|...++..+..++...+. ....++.
T Consensus 404 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp 483 (588)
T 1b3u_A 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIP 483 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHH
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 888888888888899999999999998876543 245678888888877777888888888888776433 1234555
Q ss_pred HHHHhhccCCchHHHHHHHHHHhhcccccCC---HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 002971 389 TLCESLDTLDEPEAKASMIWIIGEYAERIDN---ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVV 465 (862)
Q Consensus 389 ~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~---~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~~~~~~~~~i~~~ 465 (862)
.+.+.+.+ ..+..+..++|.+|+.+..+.. .+.++..+.+.+.+..+.||...+.++.+++.........+.+...
T Consensus 484 ~l~~~~~~-~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~ 562 (588)
T 1b3u_A 484 KVLAMSGD-PNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPI 562 (588)
T ss_dssp HHHHTTTC-SCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHH
T ss_pred HHHHHhhC-CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHH
Confidence 55544432 3466788899999998765432 2356666777777888999999999999998765432112344444
Q ss_pred HHhcccCCCChHHHHHHHHHHHHhc
Q 002971 466 LNNATVETDNPDLRDRAYIYWRLLS 490 (862)
Q Consensus 466 l~~~~~~s~~~dvrdRA~~y~~ll~ 490 (862)
+.... ++.|++||+.|..-+.-++
T Consensus 563 l~~l~-~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 563 LEKLT-QDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHT-TCSSHHHHHHHHHHHHHTT
T ss_pred HHHHc-CCCchhHHHHHHHHHHHhh
Confidence 44433 4579999999998776554
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.62 E-value=2.7e-13 Score=159.71 Aligned_cols=469 Identities=12% Similarity=0.081 Sum_probs=322.1
Q ss_pred chHHHhHhccCCCcchHHHHHHHHHHhcCCC-CcH-HHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC----hhhhHHHHH
Q 002971 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQ-PDL-AILAVNTFVKDSQDPNPLIRALAVRTMGCIR----VDKITEYLC 83 (862)
Q Consensus 10 lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~-~el-~~L~intl~kDl~~~n~~ir~lALr~l~~i~----~~~~~~~l~ 83 (862)
-+...+..+.++|...|+.+-..+..++..- ++- .--++..| .+..++++.+|..|.+.++.+. .++..+.+.
T Consensus 11 ~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L-~~~~d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll 89 (588)
T 1b3u_A 11 PIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFL-TDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCLL 89 (588)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHH-HHTCCCCHHHHHHHHHHHTTCSGGGTSGGGGGGGH
T ss_pred cHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHH-HHhcCCcHHHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 3566777899999999998887777665432 221 11133344 3455889999999999999876 356678888
Q ss_pred HHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHH
Q 002971 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTL 163 (862)
Q Consensus 84 ~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~ 163 (862)
+.+..++.|.++.||+.|+.++.++....|.......+.+.+..+..+.++.+...|+.++..+...-+.. .....+
T Consensus 90 ~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~---~~~~l~ 166 (588)
T 1b3u_A 90 PPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA---VKAELR 166 (588)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---HHHHHH
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH---HHHHHH
Confidence 99999999999999999999999999877643222246788888888889999888888888876553321 112334
Q ss_pred HHHHHHhccCChhHHHHHHHHHhhcccccH--HHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHHHh
Q 002971 164 SKLLTALNECTEWGQVFILDALSRYKAADA--REAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKK 241 (862)
Q Consensus 164 ~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~--~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~ 241 (862)
..+...+.+.++..+...++.|..+...-. .....++..+...+++.+..|...|+.++..+...++ ++.. ...
T Consensus 167 ~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~-~~~~---~~~ 242 (588)
T 1b3u_A 167 QYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP-QEDL---EAL 242 (588)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSC-HHHH---HHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCC-HHHH---HHH
Confidence 444455567788888888888877653211 2234567777778888889999999988877654432 2211 123
Q ss_pred cccchhhccc-CChhHHHHHHHHHHHHHhhC-hhhhhccc-eEE-EecCCCcHHHHHHHHHHHHHhcCcC--------cH
Q 002971 242 MAPPLVTLLS-AEPEIQYVALRNINLIVQRR-PTILAHEI-KVF-FCKYNDPIYVKMEKLEIMIKLASDR--------NI 309 (862)
Q Consensus 242 ~~~~L~~lls-~~~~iry~aL~~l~~i~~~~-p~~~~~~~-~~~-~~l~~d~~~Ik~~~L~lL~~l~~~~--------Nv 309 (862)
+.+.+..++. .++.+|+.+.+.+..++... ++.+..++ ..+ ..+.+++..+|..+...|..++..- -.
T Consensus 243 ~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 322 (588)
T 1b3u_A 243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIM 322 (588)
T ss_dssp THHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHH
Confidence 4555556664 56789999999999998743 33222221 122 2345667899999998887776532 24
Q ss_pred HHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhHh--HHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCcc--cHHH
Q 002971 310 DQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERA--AERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPN--TYES 385 (862)
Q Consensus 310 ~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~--~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~--~~~~ 385 (862)
..++..+..++.+.+..+|..++.+++.++..+... ....+..++.++....+.|...++..+..+....+. ....
T Consensus 323 ~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~ 402 (588)
T 1b3u_A 323 SQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQS 402 (588)
T ss_dssp HTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 567777777888888999999999999988765442 235567788888877777877777777777665432 2345
Q ss_pred HHHHHHHhhccCCchHHHHHHHHHHhhcccccCC---HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCC-hHHH
Q 002971 386 IIATLCESLDTLDEPEAKASMIWIIGEYAERIDN---ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEG-PQQM 461 (862)
Q Consensus 386 ~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~---~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~~~~~-~~~~ 461 (862)
++..+.+.+.+ ..+..+..+++.+|.++..... .+.++..+...+.+....||...+.++.++....+.+. ...+
T Consensus 403 ~lp~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l 481 (588)
T 1b3u_A 403 LLPAIVELAED-AKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATI 481 (588)
T ss_dssp HHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHT
T ss_pred HHHHHHHHhcC-CCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHH
Confidence 66666666654 3566778888888887654432 35677777777778889999999999999987654320 1233
Q ss_pred HHHHHHhcccCCCChHHHHHHHHHHHHh
Q 002971 462 IQVVLNNATVETDNPDLRDRAYIYWRLL 489 (862)
Q Consensus 462 i~~~l~~~~~~s~~~dvrdRA~~y~~ll 489 (862)
+..+.+. ..+.++.+|..|.....-+
T Consensus 482 lp~l~~~--~~~~~~~~R~~a~~~l~~l 507 (588)
T 1b3u_A 482 IPKVLAM--SGDPNYLHRMTTLFCINVL 507 (588)
T ss_dssp HHHHHHT--TTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH--hhCCCHHHHHHHHHHHHHH
Confidence 4444443 2457888888887765544
No 10
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.58 E-value=5.8e-13 Score=164.52 Aligned_cols=481 Identities=16% Similarity=0.149 Sum_probs=315.3
Q ss_pred cchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHH----HHHHHHHHhhcCCCCHHHHhHHHHHhcCCCh--------h
Q 002971 9 SLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLA----ILAVNTFVKDSQDPNPLIRALAVRTMGCIRV--------D 76 (862)
Q Consensus 9 ~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~----~L~intl~kDl~~~n~~ir~lALr~l~~i~~--------~ 76 (862)
.++..+.+++.+++...|+-++-.+..+++..++.. --+++.+.+-++|.++.+|..|+.++..+.. +
T Consensus 215 ~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~ 294 (852)
T 4fdd_A 215 SFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLV 294 (852)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 445566667888999999999999999888776531 2355666677788999999999988887763 2
Q ss_pred hhHHHHHHHHHhhh-----------CC-----------CChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCCh
Q 002971 77 KITEYLCDPLQRCL-----------KD-----------DDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNP 134 (862)
Q Consensus 77 ~~~~~l~~~v~~~l-----------~d-----------~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~ 134 (862)
...+.+++.+.+.+ .| .+..||+.|+.|+.++....|+.+.. .+++.+.+++.|.++
T Consensus 295 ~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~-~l~~~l~~~l~~~~~ 373 (852)
T 4fdd_A 295 RHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLP-HILPLLKELLFHHEW 373 (852)
T ss_dssp TTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHH-HHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHhcCCCH
Confidence 23446667777776 34 56679999999999999887765442 478899999999999
Q ss_pred hHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccH-----HHHHHHHHHHHHhhcC
Q 002971 135 MVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADA-----REAENIVERVTPRLQH 209 (862)
Q Consensus 135 ~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~-----~~~~~il~~v~~~l~~ 209 (862)
.+..+|+.++..|....+...-......+..++..+.+.++-.+......+..+...-. .....+++.+...++.
T Consensus 374 ~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d 453 (852)
T 4fdd_A 374 VVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD 453 (852)
T ss_dssp HHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhC
Confidence 99999999999997653322223456677888888888888777778888877764211 1234677778888888
Q ss_pred CChHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhccc-CChhHHHHHHHHHHHHHhhChhhh------hccc---
Q 002971 210 ANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTIL------AHEI--- 279 (862)
Q Consensus 210 ~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~lls-~~~~iry~aL~~l~~i~~~~p~~~------~~~~--- 279 (862)
.++.|.-.|+.++..+...... . +......+.+.|..++. .+.....++++++..++..-+..+ ..-+
T Consensus 454 ~~~~vr~~a~~aL~~l~~~~~~-~-l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l 531 (852)
T 4fdd_A 454 SNKRVQEAACSAFATLEEEACT-E-LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPL 531 (852)
T ss_dssp SSHHHHHHHHHHHHHHHHHHGG-G-GGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhH-h-hHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHH
Confidence 8899999999888876543221 1 11122234444555553 344555567777777764322111 1101
Q ss_pred -eEEEecCCCcHHHHHHHHHHHHHhcCcC--c----HHHHHHHH----HHhh-------------hhccHHHHHHHHHHH
Q 002971 280 -KVFFCKYNDPIYVKMEKLEIMIKLASDR--N----IDQVLLEF----KEYA-------------TEVDVDFVRKAVRAI 335 (862)
Q Consensus 280 -~~~~~l~~d~~~Ik~~~L~lL~~l~~~~--N----v~~Iv~eL----~~y~-------------~~~d~~~~~~~i~~I 335 (862)
..+..+.+++..++ ..++.+..++..- . ...++..+ ..++ ...|.+++..++..|
T Consensus 532 ~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l 610 (852)
T 4fdd_A 532 IQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLL 610 (852)
T ss_dssp HHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHH
T ss_pred HHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHH
Confidence 11112334444443 5666665554321 1 22232222 2221 123678999999999
Q ss_pred HHHHHhhhHhHH------HHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCcccH----HHHHHHHHHhhccCCchHHHHH
Q 002971 336 GRCAIKLERAAE------RCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTY----ESIIATLCESLDTLDEPEAKAS 405 (862)
Q Consensus 336 ~~la~k~~~~~~------~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~----~~~i~~L~~~l~~~~~~~~~~~ 405 (862)
+.++..+..... .+++.+++++......+.+++...+.++....++.. ..++..+.+.++ ..+++++..
T Consensus 611 ~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~-~~~~~v~~~ 689 (852)
T 4fdd_A 611 SGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLN-PEFISVCNN 689 (852)
T ss_dssp HHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCC-TTSHHHHHH
T ss_pred HHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcC-ccchHHHHH
Confidence 999988765544 357777777777667788899999999988776532 234555566663 346778899
Q ss_pred HHHHHhhcccccCC-----HHHHHHHHhhhCC--CCCHHHHHHHHHHHHHHhhcCCCC---ChHHHHHHHHHhcccCCCC
Q 002971 406 MIWIIGEYAERIDN-----ADELLESFLESFP--EEPAQVQLQLLTATVKLFLKKPTE---GPQQMIQVVLNNATVETDN 475 (862)
Q Consensus 406 ~~wilGEy~~~i~~-----~~~~l~~~~~~~~--~e~~~v~~~iLta~~Kl~~~~~~~---~~~~~i~~~l~~~~~~s~~ 475 (862)
++|.+|+++..+.. ...++..++..+. ..+..++-.+..+++|+..++|+. .....+...+.. .....|
T Consensus 690 a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~-l~~~~d 768 (852)
T 4fdd_A 690 ATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTS-LRNIRD 768 (852)
T ss_dssp HHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHH-HHTSCS
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHH-hccccc
Confidence 99999998765532 3566666665443 335688999999999999998752 123344444443 223455
Q ss_pred hHHHHHHHHHH-HHhcCCHHH
Q 002971 476 PDLRDRAYIYW-RLLSTDPEA 495 (862)
Q Consensus 476 ~dvrdRA~~y~-~ll~~~~~~ 495 (862)
.+.++-|+... .++..+|+.
T Consensus 769 ~~e~~~a~~~l~~li~~~p~~ 789 (852)
T 4fdd_A 769 NEEKDSAFRGICTMISVNPSG 789 (852)
T ss_dssp SHHHHHHHHHHHHHHHHCGGG
T ss_pred cHHHHHHHHHHHHHHHhChHh
Confidence 67787777664 444556653
No 11
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.57 E-value=8.8e-13 Score=162.91 Aligned_cols=412 Identities=16% Similarity=0.178 Sum_probs=242.5
Q ss_pred cCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCCh---hhhH----HHHHHHHHhhhC
Q 002971 19 QTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRV---DKIT----EYLCDPLQRCLK 91 (862)
Q Consensus 19 ~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~---~~~~----~~l~~~v~~~l~ 91 (862)
.+.|-..||-+.-.+..+ +.+|+....... +..++.+.++.+|.+|.-.+-+.-. ..+- +.+-..+.+++.
T Consensus 23 ~s~d~~~r~~Ae~~L~~~-~~~p~~~~~l~~-il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~ 100 (852)
T 4fdd_A 23 QSPDTTIQRTVQQKLEQL-NQYPDFNNYLIF-VLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIG 100 (852)
T ss_dssp TCSCHHHHHHHHHHHHHH-TTSHHHHHHHHH-HHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTT
T ss_pred hCcCHHHHHHHHHHHHHH-HhCCCHHHHHHH-HHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHc
Confidence 344555555555555543 233443222222 2223344455555555443332211 1121 123334444445
Q ss_pred CCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhc
Q 002971 92 DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALN 171 (862)
Q Consensus 92 d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~ 171 (862)
|+++.||++|+.++..+.+.++..- -.++++.|.+++.+.|+.+.-.|+.+|..+++..+.. + ..
T Consensus 101 ~~~~~vr~~~a~~i~~ia~~~~~~~-wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~--------~----~~-- 165 (852)
T 4fdd_A 101 DSSPLIRATVGILITTIASKGELQN-WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI--------L----DS-- 165 (852)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTTTT-CTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTH--------H----HH--
T ss_pred CCCHHHHHHHHHHHHHHHHhcCccc-cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHH--------h----ch--
Confidence 5555555555555555555542211 1234444555555555555555555555544332110 0 00
Q ss_pred cCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhcc-
Q 002971 172 ECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL- 250 (862)
Q Consensus 172 ~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~ll- 250 (862)
.+. ......++..+...+++.++.|..+|++++..+... .+.........+.+.|..++
T Consensus 166 ---------------~~~---~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~--~~~~~~~~~~~~l~~l~~~~~ 225 (852)
T 4fdd_A 166 ---------------DVL---DRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIIS--RTQALMLHIDSFIENLFALAG 225 (852)
T ss_dssp ---------------CSS---SSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTT--TCHHHHTSHHHHHHHHHHHHT
T ss_pred ---------------hhh---cchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHcC
Confidence 000 001234556666677888899999999998765432 11212111122444555555
Q ss_pred cCChhHHHHHHHHHHHHHhhChhhhhccceE-----EEecCCCcHHHHHHHHHHHHHhcCcC--------cHHHHHHHHH
Q 002971 251 SAEPEIQYVALRNINLIVQRRPTILAHEIKV-----FFCKYNDPIYVKMEKLEIMIKLASDR--------NIDQVLLEFK 317 (862)
Q Consensus 251 s~~~~iry~aL~~l~~i~~~~p~~~~~~~~~-----~~~l~~d~~~Ik~~~L~lL~~l~~~~--------Nv~~Iv~eL~ 317 (862)
+.++++|..++++|..++..+|+.+.+|+.. +.+..+++..+|..+++.+..++... .+..++..|.
T Consensus 226 d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll 305 (852)
T 4fdd_A 226 DEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLV 305 (852)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999988887642 22456777999999999999998754 3345666666
Q ss_pred Hhh-----------hh-----------ccHHHHHHHHHHHHHHHHhhhHh-HHHHHHHHHHHHhhhcchhHHHHHHHHHH
Q 002971 318 EYA-----------TE-----------VDVDFVRKAVRAIGRCAIKLERA-AERCISVLLELIKIKVNYVVQEAIIVIKD 374 (862)
Q Consensus 318 ~y~-----------~~-----------~d~~~~~~~i~~I~~la~k~~~~-~~~~v~~ll~ll~~~~~~v~~e~i~~l~~ 374 (862)
+.+ .+ .+..+|+.+..+++.++...+.. ....+..+.+++......+...++..+..
T Consensus 306 ~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~ 385 (852)
T 4fdd_A 306 NGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGA 385 (852)
T ss_dssp HHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 655 22 11125778889999999876532 34566667777776666788888888888
Q ss_pred HHHhCcc----cHHHHHHHHHHhhccCCchHHHHHHHHHHhhcccccC------CHHHHHHHHhhhCCCCCHHHHHHHHH
Q 002971 375 IFRRYPN----TYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID------NADELLESFLESFPEEPAQVQLQLLT 444 (862)
Q Consensus 375 i~~~~p~----~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~------~~~~~l~~~~~~~~~e~~~v~~~iLt 444 (862)
|....++ ....++..++..+.+ ..+.++.+++|.+|+|+.... .-..++..+++.+.+.++.||.....
T Consensus 386 i~~~~~~~~~~~l~~~l~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~ 464 (852)
T 4fdd_A 386 IAEGCMQGMIPYLPELIPHLIQCLSD-KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACS 464 (852)
T ss_dssp TTTTTHHHHGGGHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHhcchHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 7665432 234567777777765 367889999999999987542 24567788888777889999999999
Q ss_pred HHHHHhhcCCCC---ChHHHHHHHHHh
Q 002971 445 ATVKLFLKKPTE---GPQQMIQVVLNN 468 (862)
Q Consensus 445 a~~Kl~~~~~~~---~~~~~i~~~l~~ 468 (862)
|+..+....+.+ -..+++..+++.
T Consensus 465 aL~~l~~~~~~~l~~~l~~ll~~L~~~ 491 (852)
T 4fdd_A 465 AFATLEEEACTELVPYLAYILDTLVFA 491 (852)
T ss_dssp HHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhhHhhHhHHHHHHHHHHHH
Confidence 999887654332 123445555443
No 12
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.56 E-value=4.7e-14 Score=166.68 Aligned_cols=425 Identities=15% Similarity=0.158 Sum_probs=267.4
Q ss_pred HHHHHhhcCCCCHHHHhHHHHHhcCCC--hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHH
Q 002971 48 VNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESL 125 (862)
Q Consensus 48 intl~kDl~~~n~~ir~lALr~l~~i~--~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l 125 (862)
++.+++.|+++|...|.-|++-+-.+. +.++ ..+...+.+++.++++.+||.+.+++..+.+.+||.+.- .++.+
T Consensus 15 ~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~-~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l--~~n~l 91 (591)
T 2vgl_B 15 IFELKAELNNEKKEKRKEAVKKVIAAMTVGKDV-SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIM--AVNSF 91 (591)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCC-GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHT--THHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHH--HHHHH
Confidence 566788888887766666555443221 1222 234455666778888888888888888877777776542 46777
Q ss_pred HHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHH--HHHHHHH
Q 002971 126 KDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREA--ENIVERV 203 (862)
Q Consensus 126 ~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~--~~il~~v 203 (862)
.+.|.|+|+.+...|+.++..+.. -++....+..+.+.+.+.+|..+.+....+.++...+++.. ..+++.+
T Consensus 92 ~kdL~~~n~~ir~~AL~~L~~i~~------~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l 165 (591)
T 2vgl_B 92 VKDCEDPNPLIRALAVRTMGCIRV------DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSL 165 (591)
T ss_dssp GGGSSSSSHHHHHHHHHHHHTCCS------GGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHcCCh------HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHH
Confidence 777788888888888777766641 12233344556666777777777666666655543333222 2467888
Q ss_pred HHhhcCCChHHHHHHHHHHHHhhhccCChHH-HHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhChhhhhccce-
Q 002971 204 TPRLQHANCAVVLSAVKMILQQMELITSTDV-VRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIK- 280 (862)
Q Consensus 204 ~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~-~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~~~~~~~~- 280 (862)
...+.+.++.|+..|+.++..+... +++. .-.+.......|+..+ ..++-.+-..|+.+..+....+.....-+.
T Consensus 166 ~~lL~d~d~~V~~~A~~aL~~i~~~--~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~ 243 (591)
T 2vgl_B 166 RDLIADSNPMVVANAVAALSEISES--HPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICER 243 (591)
T ss_dssp HHTTSCSCHHHHHHHHHHHHHHTTS--CCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHH
T ss_pred HHHhCCCChhHHHHHHHHHHHHHhh--CCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 8889999999999999999887532 2211 0000001112233333 345666766777665554333322222222
Q ss_pred EEEecCCCcHHHHHHHHHHHHHhcC-----cCcHHHHHHHHHH---hhhhccHHHHHHHHHHHHHHHHhhhHhHHHHHHH
Q 002971 281 VFFCKYNDPIYVKMEKLEIMIKLAS-----DRNIDQVLLEFKE---YATEVDVDFVRKAVRAIGRCAIKLERAAERCISV 352 (862)
Q Consensus 281 ~~~~l~~d~~~Ik~~~L~lL~~l~~-----~~Nv~~Iv~eL~~---y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ 352 (862)
...++.+.+..|+..+...+..+.+ ++-+..++..+.. .+.+.|.++|..++++|+.++.+.+.....++..
T Consensus 244 l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~ 323 (591)
T 2vgl_B 244 VTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKV 323 (591)
T ss_dssp HTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTT
T ss_pred HHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHh
Confidence 2235667778999999999999873 4456555544432 4456789999999999999998776544333332
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHHHhCcccHHHHHHHHHHhhccCCchHHHHHHHHHHhhcccccC-CHHHHHHHHhhhC
Q 002971 353 LLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID-NADELLESFLESF 431 (862)
Q Consensus 353 ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~-~~~~~l~~~~~~~ 431 (862)
++.+. ....+|..+++..+..+. +++.-+.++..|.+++.+. +++.+..++|-||..+...+ ....+++.+++-+
T Consensus 324 ~~~~~-~d~~~Ir~~al~~L~~l~--~~~nv~~iv~~L~~~l~~~-d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll 399 (591)
T 2vgl_B 324 FFVKY-NDPIYVKLEKLDIMIRLA--SQANIAQVLAELKEYATEV-DVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLI 399 (591)
T ss_dssp TSCCT-TSCHHHHHHHHHHHHHTC--CSSTHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred heecc-CChHHHHHHHHHHHHHHC--ChhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 22111 223567777776665553 3344456788888887654 56778888999999887653 2456777777777
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcccCCCChHHHHHHHHHHHHhcC
Q 002971 432 PEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLST 491 (862)
Q Consensus 432 ~~e~~~v~~~iLta~~Kl~~~~~~~~~~~~i~~~l~~~~~~s~~~dvrdRA~~y~~ll~~ 491 (862)
......++...+.++..+..++|+. ....+..+.+. ..+..++++|. ...|-+-..
T Consensus 400 ~~~~~~v~~e~i~~l~~ii~~~p~~-~~~~v~~L~~~-l~~~~~~~~~~--~~~wilGey 455 (591)
T 2vgl_B 400 QTKVNYVVQEAIVVIRDIFRKYPNK-YESIIATLCEN-LDSLDEPDARA--AMIWIVGEY 455 (591)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHSCSS-CCTTHHHHHHT-TTTCCSHHHHH--HHHHHHHTT
T ss_pred cccchHHHHHHHHHHHHHHHHCcch-HHHHHHHHHHH-HHhccCHHHHH--HHHHHHHcc
Confidence 7778888888888999998888863 23455566554 34456788854 445655543
No 13
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.52 E-value=2.7e-13 Score=160.83 Aligned_cols=405 Identities=13% Similarity=0.110 Sum_probs=293.8
Q ss_pred HHHHHhhcCCCCHHHHhHHHHHhcCCC--hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHH
Q 002971 48 VNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESL 125 (862)
Q Consensus 48 intl~kDl~~~n~~ir~lALr~l~~i~--~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l 125 (862)
++.|++.+++++...|+-|++-+-.+. +.++ ..+...+.+++.+++..+||-+.+++..+++.+||...- .++.+
T Consensus 36 ~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~-~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l--~in~l 112 (618)
T 1w63_A 36 CAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPA-HFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL--MTNCI 112 (618)
T ss_dssp HHHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCC-GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH--HHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCC-cchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH--HHHHH
Confidence 566788888888777877777665532 2222 345667788999999999999999999999999986542 67889
Q ss_pred HHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHH
Q 002971 126 KDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTP 205 (862)
Q Consensus 126 ~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~ 205 (862)
.+-|.|+|+.+.+.|+.+|..|... ++....+..+.+.+.+.+|+..-+.+..+.++...+++..+.+++.+..
T Consensus 113 ~kDL~~~n~~vr~lAL~~L~~i~~~------~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~ 186 (618)
T 1w63_A 113 KNDLNHSTQFVQGLALCTLGCMGSS------EMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKN 186 (618)
T ss_dssp HHHHSCSSSHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTT
T ss_pred HHhcCCCCHhHHHHHHHHHHhcCCH------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence 9999999999999999999998632 2334556677777888999988877777766655555555566777778
Q ss_pred hhcCCChHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhccc----------------CChhHHHHHHHHHHHHHh
Q 002971 206 RLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS----------------AEPEIQYVALRNINLIVQ 269 (862)
Q Consensus 206 ~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~lls----------------~~~~iry~aL~~l~~i~~ 269 (862)
.+...|+.|+..|+.++..+.. .+++.... ..++++.|+.+|. .+|-.|-..++.+..+..
T Consensus 187 lL~D~d~~V~~~Al~~L~~i~~--~~~~~~~~-~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~ 263 (618)
T 1w63_A 187 LLNEKNHGVLHTSVVLLTEMCE--RSPDMLAH-FRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGR 263 (618)
T ss_dssp STTCCCHHHHHHHHHHHHHHCC--SHHHHHHH-HHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTT
T ss_pred HhCCCCHhHHHHHHHHHHHHHH--hChHHHHH-HHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCC
Confidence 8889999999999999988743 23432222 2244555554442 267788889999999888
Q ss_pred hChhhhhccceEE-------EecCCCcHHHHHHHHHHHHHhcCcCcH-HHHHHHHHHhhhhccHHHHHHHHHHHHHHHHh
Q 002971 270 RRPTILAHEIKVF-------FCKYNDPIYVKMEKLEIMIKLASDRNI-DQVLLEFKEYATEVDVDFVRKAVRAIGRCAIK 341 (862)
Q Consensus 270 ~~p~~~~~~~~~~-------~~l~~d~~~Ik~~~L~lL~~l~~~~Nv-~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k 341 (862)
..|..-......+ ....+....|...+...+..+.+.... ...++-|..++.+.|.+++..++.+|+.++.+
T Consensus 264 ~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~ 343 (618)
T 1w63_A 264 NDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQT 343 (618)
T ss_dssp TCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhh
Confidence 7765322211111 122334568999999999998764432 34677778888888999999999999999999
Q ss_pred hhHhHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCcccHHHHHHHHHHhhccCCchHHHHHHHHHHhhccccc-CCH
Q 002971 342 LERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERI-DNA 420 (862)
Q Consensus 342 ~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i-~~~ 420 (862)
.+.....+.+.++.++...+.+|...++..+..+... +.-+.++..|.+++.+. +++.+..++..||.-+... ++.
T Consensus 344 ~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~--~nv~~iv~eL~~~l~~~-d~e~r~~~v~~I~~la~k~~~~~ 420 (618)
T 1w63_A 344 DHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNG--NNIRGMMKELLYFLDSC-EPEFKADCASGIFLAAEKYAPSK 420 (618)
T ss_dssp HHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS--SSTHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHSSCCCH
T ss_pred CHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccc--ccHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHhCccH
Confidence 8887888889999999998889999999988877542 32456788888888763 5678888888888887765 355
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHh
Q 002971 421 DELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNN 468 (862)
Q Consensus 421 ~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~~~~~~~~~i~~~l~~ 468 (862)
..++..+++-+...+..++..++..+..+..+.|+. -...+..+.+.
T Consensus 421 ~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l-~~~~v~~L~~~ 467 (618)
T 1w63_A 421 RWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEM-HAYTVQRLYKA 467 (618)
T ss_dssp HHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCST-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhH-HHHHHHHHHHH
Confidence 566666665444445556667788888888888863 23355555554
No 14
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.50 E-value=7.3e-12 Score=145.99 Aligned_cols=341 Identities=14% Similarity=0.173 Sum_probs=238.3
Q ss_pred cccchHHHhHhccCCCcchHHHHHHHHHHhcCC--CCcHHH----HHHHHHHhhcCCC-CHHHHhHHHHHhcCCCh--hh
Q 002971 7 VSSLFTDVVNCMQTENLELKKLVYLYLINYAKS--QPDLAI----LAVNTFVKDSQDP-NPLIRALAVRTMGCIRV--DK 77 (862)
Q Consensus 7 vs~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~--~~el~~----L~intl~kDl~~~-n~~ir~lALr~l~~i~~--~~ 77 (862)
....++.++..+.+++...++.+-.++..++.. ++.... -++..|.+-|.++ ++.+|..|+++|+++.. ++
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 445688889999999999999999999888654 332211 2466788888887 89999999999998875 33
Q ss_pred hHH-----HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccc---cccccchHHHHHHhhcCCChhHHHHHHHHHHHHhh
Q 002971 78 ITE-----YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEE 149 (862)
Q Consensus 78 ~~~-----~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~ 149 (862)
... ..++.+.++|.+.++.||..|+.++..+....|+ .+...+.++.|..+|.+.++.|..+|+.+|..++.
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 333 3478889999999999999999999999876543 23334688999999999999999999999999987
Q ss_pred cC-CCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHH-----HHHHHHHHhhcCCChHHHHHHHHHHH
Q 002971 150 NS-SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE-----NIVERVTPRLQHANCAVVLSAVKMIL 223 (862)
Q Consensus 150 ~~-~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~-----~il~~v~~~l~~~n~aV~~eai~~i~ 223 (862)
.. +..........+..|+..+.+.++..+...+..|..+....++... .++..+...+++.+..|...|+.++.
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~ 324 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 324 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHH
Confidence 64 3333334456677888888888888898888888887755444333 34567788899999999999999998
Q ss_pred HhhhccCChHHHHHHH-Hhcccchhhcc-cCChhHHHHHHHHHHHHHhhChhhhhccceEEEecCCCcHHHHHHHHHHHH
Q 002971 224 QQMELITSTDVVRNLC-KKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMI 301 (862)
Q Consensus 224 ~~~~~~~~~~~~~~~~-~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~ 301 (862)
++.. .++.....+. ..+.+.|+.+| +.++.+|..++.+|..|+...+.....
T Consensus 325 ~l~~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~------------------------ 378 (530)
T 1wa5_B 325 NIVT--GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQA------------------------ 378 (530)
T ss_dssp HHTT--SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH------------------------
T ss_pred HHHc--CCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH------------------------
Confidence 8742 2333332222 23555666676 356778888888888776543321110
Q ss_pred HhcCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhH---hHH-----HHHHHHHHHHhhhcchhHHHHHHHHH
Q 002971 302 KLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLER---AAE-----RCISVLLELIKIKVNYVVQEAIIVIK 373 (862)
Q Consensus 302 ~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~---~~~-----~~v~~ll~ll~~~~~~v~~e~i~~l~ 373 (862)
+.+. .++..|...+.+.+.+++..++.+|+.++....+ ... .++..|++++......+...+...+.
T Consensus 379 -~~~~----~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~ 453 (530)
T 1wa5_B 379 -VIDA----NLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALE 453 (530)
T ss_dssp -HHHT----TCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred -HHHC----CCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 0111 2445555666677888999999999988865322 111 24566666666655555555556666
Q ss_pred HHHHh
Q 002971 374 DIFRR 378 (862)
Q Consensus 374 ~i~~~ 378 (862)
.++..
T Consensus 454 ~l~~~ 458 (530)
T 1wa5_B 454 NILKM 458 (530)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66544
No 15
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.49 E-value=8.8e-12 Score=141.68 Aligned_cols=329 Identities=16% Similarity=0.103 Sum_probs=229.2
Q ss_pred hHHHhHhccCCCcchHHHHHHHHHHhcC--CCCcHHH-----HHHHHHHhhcCCC-CHHHHhHHHHHhcCCCh--hhhH-
Q 002971 11 FTDVVNCMQTENLELKKLVYLYLINYAK--SQPDLAI-----LAVNTFVKDSQDP-NPLIRALAVRTMGCIRV--DKIT- 79 (862)
Q Consensus 11 f~~vv~l~~s~~~~~Kkl~Yl~l~~~~~--~~~el~~-----L~intl~kDl~~~-n~~ir~lALr~l~~i~~--~~~~- 79 (862)
++.+++.+.+++...|..+...+..++. .++.... -++..|.+-|.+. ++.+|..|+++++++.. ++..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 7778889999999999999999987653 3443221 2466777778888 89999999999998764 3322
Q ss_pred ----HHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccc---ccccchHHHHHHhhcC-CChhHHHHHHHHHHHHhhcC
Q 002971 80 ----EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISD-NNPMVVANAVAALAEIEENS 151 (862)
Q Consensus 80 ----~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~---~~~~~~~~~l~~lL~d-~d~~V~~~a~~~l~~i~~~~ 151 (862)
..+++.+.+++.+.++.||..|+.++..+...+++. +.+.+.++.+..+|.+ .++.|..+|+.+|..++...
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 356888999999999999999999999998876542 2224678999999985 78999999999999998764
Q ss_pred -CCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHH-----HHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 002971 152 -SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE-----NIVERVTPRLQHANCAVVLSAVKMILQQ 225 (862)
Q Consensus 152 -~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~-----~il~~v~~~l~~~n~aV~~eai~~i~~~ 225 (862)
+..........+..|++.+.+.++..+...+..|..+....++... .+++.+...+++.+..|...|+.++.++
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 4333444566788888888888898888888888887754433322 2466777888999999999999999887
Q ss_pred hhccCChHHHHHHHH-hcccchhhccc-CChhHHHHHHHHHHHHHhhChhhhh----cc-ce-EEEecCCCcHHHHHHHH
Q 002971 226 MELITSTDVVRNLCK-KMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILA----HE-IK-VFFCKYNDPIYVKMEKL 297 (862)
Q Consensus 226 ~~~~~~~~~~~~~~~-~~~~~L~~lls-~~~~iry~aL~~l~~i~~~~p~~~~----~~-~~-~~~~l~~d~~~Ik~~~L 297 (862)
.. .++...+.+.. .+.+.|+.++. .++.+|..++..|..|+...+.... .. +. .+..+.+++..+|..+.
T Consensus 262 ~~--~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~ 339 (450)
T 2jdq_A 262 VT--GDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA 339 (450)
T ss_dssp TT--SCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred hh--CChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 43 23333222221 35566777774 5778999999999998864443211 11 11 12233344566666666
Q ss_pred HHHHHhcCc---CcHHH-----HHHHHHHhhhhccHHHHHHHHHHHHHHHHh
Q 002971 298 EIMIKLASD---RNIDQ-----VLLEFKEYATEVDVDFVRKAVRAIGRCAIK 341 (862)
Q Consensus 298 ~lL~~l~~~---~Nv~~-----Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k 341 (862)
..|..++.. ++++. ++..|.+.+.+.|.+++..++.+++.++..
T Consensus 340 ~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 340 WAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 666666532 23332 344555556666666666666666666553
No 16
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.49 E-value=6.2e-12 Score=161.54 Aligned_cols=477 Identities=13% Similarity=0.122 Sum_probs=299.6
Q ss_pred ccchHHHhHhccCCCcchHHHHHHHHHHhcCCC-----CcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---hhhhH
Q 002971 8 SSLFTDVVNCMQTENLELKKLVYLYLINYAKSQ-----PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---VDKIT 79 (862)
Q Consensus 8 s~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~-----~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~---~~~~~ 79 (862)
++-+..++.-+.+.|...|+++--.+......+ ++..--++..+.+-+.|+|+.+|..|+.+++.+. .++..
T Consensus 5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~ 84 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV 84 (1230)
T ss_dssp CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 566888888899999999999977777765442 2334456677888889999999999999988753 34566
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccc------c--cccchHHHHHHhhcC-CChhHHHHHHHHHHHHhhc
Q 002971 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL------V--EDRGFLESLKDLISD-NNPMVVANAVAALAEIEEN 150 (862)
Q Consensus 80 ~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~------~--~~~~~~~~l~~lL~d-~d~~V~~~a~~~l~~i~~~ 150 (862)
+.+.+.+.+.+.|.++.||..|+.|+..+....+.. . ....+++.|...+.| .++.+...|+.+|.+++..
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999998765542 0 012477888888885 8899999999999999876
Q ss_pred CCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHH-HHHHHHHHHHhhcCCC-hHHHHHHHHHHHHhhhc
Q 002971 151 SSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADARE-AENIVERVTPRLQHAN-CAVVLSAVKMILQQMEL 228 (862)
Q Consensus 151 ~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~-~~~il~~v~~~l~~~n-~aV~~eai~~i~~~~~~ 228 (862)
.+..........+..|+..+.+.+++.+...++.|..+.....+. ...+++.+...+.+.+ ..+...++.++..+...
T Consensus 165 ~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~ 244 (1230)
T 1u6g_C 165 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQ 244 (1230)
T ss_dssp TCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHH
Confidence 554433444667778888888888999998888888776543322 2234555555543322 22223333333333221
Q ss_pred cCChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhChhhhhccce-----EEEec-----------------
Q 002971 229 ITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIK-----VFFCK----------------- 285 (862)
Q Consensus 229 ~~~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~~~~~~~~-----~~~~l----------------- 285 (862)
.+. .+......+.+.+...+ ..++++|..++..+..++...++.+.+++. .+..+
T Consensus 245 ~~~--~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~ 322 (1230)
T 1u6g_C 245 AGH--RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENA 322 (1230)
T ss_dssp SSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC--------------
T ss_pred hHH--HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCccccccccc
Confidence 111 11111112334444555 457889999999999998876643322211 00000
Q ss_pred ------C-------------CC-cHHHHHHHHHHHHHhcCcC--cHHH----HHHHHHHhhhhccHHHHHHHHHHHHHHH
Q 002971 286 ------Y-------------ND-PIYVKMEKLEIMIKLASDR--NIDQ----VLLEFKEYATEVDVDFVRKAVRAIGRCA 339 (862)
Q Consensus 286 ------~-------------~d-~~~Ik~~~L~lL~~l~~~~--Nv~~----Iv~eL~~y~~~~d~~~~~~~i~~I~~la 339 (862)
. +| ...+|+.+++.|..++... .+.. ++..|..++.+.+.++|..++.+++.+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 402 (1230)
T 1u6g_C 323 MDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLL 402 (1230)
T ss_dssp ----------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHH
T ss_pred ccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 0 00 1347999999998887632 2233 4555566677778889999999988776
Q ss_pred HhhhH-----------------------hHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCcc----cHHHHHHHHHH
Q 002971 340 IKLER-----------------------AAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPN----TYESIIATLCE 392 (862)
Q Consensus 340 ~k~~~-----------------------~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~----~~~~~i~~L~~ 392 (862)
..... .....++.+.+.+......+...++..+..++...++ ....++..+.+
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~ 482 (1230)
T 1u6g_C 403 KQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIF 482 (1230)
T ss_dssp HHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHH
T ss_pred HHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHH
Confidence 64321 1223444555557666667777888888888887654 23456666666
Q ss_pred hhccCCc-hHHHHHHHHHHhhcccccC----C-----HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCC------C
Q 002971 393 SLDTLDE-PEAKASMIWIIGEYAERID----N-----ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPT------E 456 (862)
Q Consensus 393 ~l~~~~~-~~~~~~~~wilGEy~~~i~----~-----~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~~~------~ 456 (862)
.+.+-.. ++++. |.++.++..+. . -..++..++..+.+....|+...+.++..+.....+ .
T Consensus 483 ~L~d~~~~~~v~~---~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~ 559 (1230)
T 1u6g_C 483 SLNDKSSSSNLKI---DALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSF 559 (1230)
T ss_dssp HTTCSSSCHHHHH---HHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCC
T ss_pred HHcCCCCcchHHH---HHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCccccccc
Confidence 6654321 23333 33333222211 0 123455555666677788877776666666532111 1
Q ss_pred ChH----HHHHHHHHhcccCCCChHHHHHHHHHHHHh
Q 002971 457 GPQ----QMIQVVLNNATVETDNPDLRDRAYIYWRLL 489 (862)
Q Consensus 457 ~~~----~~i~~~l~~~~~~s~~~dvrdRA~~y~~ll 489 (862)
... .++..+++.....+.++++|+.|......+
T Consensus 560 ~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L 596 (1230)
T 1u6g_C 560 DATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQI 596 (1230)
T ss_dssp CCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 133 444555554332457899999998766544
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.47 E-value=3.4e-11 Score=140.18 Aligned_cols=340 Identities=16% Similarity=0.159 Sum_probs=240.0
Q ss_pred cchHHHhHhccCCCcchHHHHHHHHHHhcCCCC--cHHHH----HHHHHHhhcCCCC-HHHHhHHHHHhcCCCh--hhhH
Q 002971 9 SLFTDVVNCMQTENLELKKLVYLYLINYAKSQP--DLAIL----AVNTFVKDSQDPN-PLIRALAVRTMGCIRV--DKIT 79 (862)
Q Consensus 9 ~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~--el~~L----~intl~kDl~~~n-~~ir~lALr~l~~i~~--~~~~ 79 (862)
..++.+++.+.+++...+..+-.++..++...+ ....+ ++..|.+-|.+++ +.+|..|+.+|++|.. ++..
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 347888999999999999988888888755432 22111 3566777778876 9999999999998874 4433
Q ss_pred H-----HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccc---cccccchHHHHHHhh-cCCChhHHHHHHHHHHHHhhc
Q 002971 80 E-----YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLI-SDNNPMVVANAVAALAEIEEN 150 (862)
Q Consensus 80 ~-----~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~---~~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~~ 150 (862)
. ..++.+.+++.+.++.||..|+.++..+....|+ .+...+.++.|..+| .+.++.|..+|+.+|..++..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 3 3678899999999999999999999999876554 233346788899999 678999999999999999987
Q ss_pred CCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHH-----HHHHHHHhhcCCChHHHHHHHHHHHHh
Q 002971 151 SSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-----IVERVTPRLQHANCAVVLSAVKMILQQ 225 (862)
Q Consensus 151 ~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~-----il~~v~~~l~~~n~aV~~eai~~i~~~ 225 (862)
.+..........+..|+..+...++..+...+..|..+...+...... +++.+...+++.+..|...|+.++.++
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl 313 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI 313 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 654444455667888888888888889999999998887655443333 356778889999999999999999887
Q ss_pred hhccCChHHHHHHH-Hhcccchhhcc-cC-ChhHHHHHHHHHHHHHhhChhhhhccceEEEecCCCcHHHHHHHHHHHHH
Q 002971 226 MELITSTDVVRNLC-KKMAPPLVTLL-SA-EPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIK 302 (862)
Q Consensus 226 ~~~~~~~~~~~~~~-~~~~~~L~~ll-s~-~~~iry~aL~~l~~i~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~ 302 (862)
.. .++.....+. ..+.+.|+.+| +. ++.+|..++.+|..|+...+.... .
T Consensus 314 ~~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~-------------------------~ 366 (528)
T 4b8j_A 314 VT--GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQ-------------------------A 366 (528)
T ss_dssp TT--SCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHH-------------------------H
T ss_pred Hc--CCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHH-------------------------H
Confidence 42 2343333222 13455566777 44 677888888888887754332111 0
Q ss_pred hcCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhh-hHhHH-----HHHHHHHHHHhhhcchhHHHHHHHHHHHH
Q 002971 303 LASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKL-ERAAE-----RCISVLLELIKIKVNYVVQEAIIVIKDIF 376 (862)
Q Consensus 303 l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~-~~~~~-----~~v~~ll~ll~~~~~~v~~e~i~~l~~i~ 376 (862)
+.+. .++..|.+.+.+.+.+++..++.+|+.++... +.... .++..+++++......+...++..+.+++
T Consensus 367 ~~~~----~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~ 442 (528)
T 4b8j_A 367 VINA----GIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENIL 442 (528)
T ss_dssp HHHT----TCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHC----CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 0111 23455555666678889999999998888752 22111 24566777777666666666666666666
Q ss_pred HhC
Q 002971 377 RRY 379 (862)
Q Consensus 377 ~~~ 379 (862)
+..
T Consensus 443 ~~~ 445 (528)
T 4b8j_A 443 KVG 445 (528)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 18
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.46 E-value=1.7e-10 Score=142.25 Aligned_cols=438 Identities=13% Similarity=0.126 Sum_probs=287.2
Q ss_pred hHHHhHhc-cCCCcchHHHHHHHHHHhcCCC-CcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC--------------
Q 002971 11 FTDVVNCM-QTENLELKKLVYLYLINYAKSQ-PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-------------- 74 (862)
Q Consensus 11 f~~vv~l~-~s~~~~~Kkl~Yl~l~~~~~~~-~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~-------------- 74 (862)
+.+++..+ .+.|-..|+-+--++..+.+.+ |+.......-+.+ .+.++.+|-+|...+.+..
T Consensus 6 l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~--~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~ 83 (861)
T 2bpt_A 6 FAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLID--ENTKLEGRILAALTLKNELVSKDSVKTQQFAQR 83 (861)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTC--TTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHH
T ss_pred HHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhC--CCCChHHHHHHHHHHHhhccCcChHHHHHHHHh
Confidence 44556566 7889999999999999876543 5544344444432 2357899999998888763
Q ss_pred -----hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhc-cc-cccccchHHHHHHhhcCC-ChhHHHHHHHHHHH
Q 002971 75 -----VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN-AE-LVEDRGFLESLKDLISDN-NPMVVANAVAALAE 146 (862)
Q Consensus 75 -----~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~-p~-~~~~~~~~~~l~~lL~d~-d~~V~~~a~~~l~~ 146 (862)
.++..+.+-..+.+.+.+.++.||++++.++..+.+.+ |+ ..+ ++++.|.+++.+. |+.+.-.|+.++..
T Consensus 84 ~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~--~ll~~L~~~l~~~~~~~~r~~al~~l~~ 161 (861)
T 2bpt_A 84 WITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWP--ELMKIMVDNTGAEQPENVKRASLLALGY 161 (861)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCH--HHHHHHHHHTSTTSCHHHHHHHHHHHHH
T ss_pred HhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccH--HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 23344566677788889999999999999999998874 53 333 3778888888887 99999999999999
Q ss_pred HhhcCCCC---cccccHHHHHHHHHHhccC--ChhHHHHHHHHHhhcc---ccc---HHHHHHHHHHHHHhhcCCChHHH
Q 002971 147 IEENSSRP---IFEITSHTLSKLLTALNEC--TEWGQVFILDALSRYK---AAD---AREAENIVERVTPRLQHANCAVV 215 (862)
Q Consensus 147 i~~~~~~~---~~~l~~~~~~~Ll~~l~~~--~~w~q~~iL~~L~~~~---~~~---~~~~~~il~~v~~~l~~~n~aV~ 215 (862)
+++.-... .-......+..+...+.+. ++-.+...++.|..+. ..+ ......+++.+...+++.+..+.
T Consensus 162 l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r 241 (861)
T 2bpt_A 162 MCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQ 241 (861)
T ss_dssp HHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHH
T ss_pred HHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHH
Confidence 98753322 1223344555566666665 5556777777776542 211 11223466777777788888888
Q ss_pred HHHHHHHHHhhhccCChHHHHHHHH-hcccchhhcc-cCChhHHHHHHHHHHHHHhhC-----------------hhhhh
Q 002971 216 LSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLL-SAEPEIQYVALRNINLIVQRR-----------------PTILA 276 (862)
Q Consensus 216 ~eai~~i~~~~~~~~~~~~~~~~~~-~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~-----------------p~~~~ 276 (862)
..+++++..+.... ++.+..... .+.+.+...+ +.++.+|..+++.+..++... +..+.
T Consensus 242 ~~a~~~l~~l~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (861)
T 2bpt_A 242 AAAFGCLCKIMSKY--YTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFAL 319 (861)
T ss_dssp HHHHHHHHHHHHHH--GGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHH
Confidence 88888887664321 111112122 2333333444 457789999999988887642 11221
Q ss_pred ccc----eE-EEecC-------CCcHHHHHHHHHHHHHhcC---cCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHh
Q 002971 277 HEI----KV-FFCKY-------NDPIYVKMEKLEIMIKLAS---DRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIK 341 (862)
Q Consensus 277 ~~~----~~-~~~l~-------~d~~~Ik~~~L~lL~~l~~---~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k 341 (862)
+++ .. +.++. +|+..+|+.+.+.|..++. +.-+..+++.+.+.+.+.+...|..++.++|.++..
T Consensus 320 ~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~ 399 (861)
T 2bpt_A 320 SSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDG 399 (861)
T ss_dssp HHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcC
Confidence 111 11 11221 2336799988888877764 345667777777777888888999999999998865
Q ss_pred hh-HhH----HHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhC------cccHHHHHHHHHHhhccCCchHHHHHHHHHH
Q 002971 342 LE-RAA----ERCISVLLELIKIKVNYVVQEAIIVIKDIFRRY------PNTYESIIATLCESLDTLDEPEAKASMIWII 410 (862)
Q Consensus 342 ~~-~~~----~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~------p~~~~~~i~~L~~~l~~~~~~~~~~~~~wil 410 (862)
.. ... +..+..+++.+......+...+...+.++.... +.....++..+.+.+.+ .+..+..++|.+
T Consensus 400 ~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~--~~~v~~~a~~al 477 (861)
T 2bpt_A 400 PDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD--HPKVATNCSWTI 477 (861)
T ss_dssp SCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS--CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhcc--ChHHHHHHHHHH
Confidence 42 223 334555555555555566666666665555431 33456778888887765 377888889998
Q ss_pred hhcccccC---------CHHHHHHHHhhhCCC--CCHHHHHHHHHHHHHHhhcCCCC
Q 002971 411 GEYAERID---------NADELLESFLESFPE--EPAQVQLQLLTATVKLFLKKPTE 456 (862)
Q Consensus 411 GEy~~~i~---------~~~~~l~~~~~~~~~--e~~~v~~~iLta~~Kl~~~~~~~ 456 (862)
+.+++... ..+.++..+.+.+.. .++.||..++.++..+....+.+
T Consensus 478 ~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~ 534 (861)
T 2bpt_A 478 INLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT 534 (861)
T ss_dssp HHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG
T ss_pred HHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh
Confidence 87765432 235667766666553 23689999999999998877753
No 19
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.45 E-value=3.1e-12 Score=145.45 Aligned_cols=330 Identities=15% Similarity=0.129 Sum_probs=215.3
Q ss_pred HHHHHHHhhcCCCCHHHHhHHHHHhcCC----Ch---hhhHH--HHHHHHHhhhCCC-ChHHHHHHHHHHHHHHhhcccc
Q 002971 46 LAVNTFVKDSQDPNPLIRALAVRTMGCI----RV---DKITE--YLCDPLQRCLKDD-DPYVRKTAAICVAKLYDINAEL 115 (862)
Q Consensus 46 L~intl~kDl~~~n~~ir~lALr~l~~i----~~---~~~~~--~l~~~v~~~l~d~-~~yVRk~A~~~l~kl~~~~p~~ 115 (862)
+++..+.+.++++++.+|-.|++.+..+ .. .++++ .+++.+.+++.+. ++.||..|+.++..+...+++.
T Consensus 20 ~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 99 (450)
T 2jdq_A 20 VITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ 99 (450)
T ss_dssp --CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 3567777888899999999999998876 22 23333 5788889999998 9999999999999998866543
Q ss_pred c---cccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccc-cHHHHHHHHHHhcc-CChhHHHHHHHHHhhccc
Q 002971 116 V---EDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI-TSHTLSKLLTALNE-CTEWGQVFILDALSRYKA 190 (862)
Q Consensus 116 ~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l-~~~~~~~Ll~~l~~-~~~w~q~~iL~~L~~~~~ 190 (862)
. .+.+.++.|..+|.+.|+.|...|+.+|..++...+...-.+ ....+..|++.+.+ .++-.+...+..|..+..
T Consensus 100 ~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 179 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCR 179 (450)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhC
Confidence 2 234789999999999999999999999999987542111001 11346677777774 566677777777776653
Q ss_pred cc-H----HHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHH-Hhcccchhhcc-cCChhHHHHHHHH
Q 002971 191 AD-A----REAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC-KKMAPPLVTLL-SAEPEIQYVALRN 263 (862)
Q Consensus 191 ~~-~----~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~-~~~~~~L~~ll-s~~~~iry~aL~~ 263 (862)
.. + .....+++.+...+++.+..|+..++.++.++.. ..++....+. ..+.+.|+.++ +.++++|..+++.
T Consensus 180 ~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~ 257 (450)
T 2jdq_A 180 GKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSD--GPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRA 257 (450)
T ss_dssp CSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTS--SSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHC--CCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHH
Confidence 22 1 1123567777888888899999999999988743 1233333222 24667777877 4678999999999
Q ss_pred HHHHHhhChhhh----hcc-ce-EEEecCCCcHHHHHHHHHHHHHhcC--cCcHH-----HHHHHHHHhhhhccHHHHHH
Q 002971 264 INLIVQRRPTIL----AHE-IK-VFFCKYNDPIYVKMEKLEIMIKLAS--DRNID-----QVLLEFKEYATEVDVDFVRK 330 (862)
Q Consensus 264 l~~i~~~~p~~~----~~~-~~-~~~~l~~d~~~Ik~~~L~lL~~l~~--~~Nv~-----~Iv~eL~~y~~~~d~~~~~~ 330 (862)
|..++...+... ... +. ...++.+++..+|..++..|..++. +.+.+ .++..|...+.+.+.+++..
T Consensus 258 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~ 337 (450)
T 2jdq_A 258 VGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKE 337 (450)
T ss_dssp HHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHH
Confidence 999987654321 111 11 1223445556777777777777763 23332 24445556666667777777
Q ss_pred HHHHHHHHHHhh-hHhHH-----HHHHHHHHHHhhhcchhHHHHHHHHHHHHH
Q 002971 331 AVRAIGRCAIKL-ERAAE-----RCISVLLELIKIKVNYVVQEAIIVIKDIFR 377 (862)
Q Consensus 331 ~i~~I~~la~k~-~~~~~-----~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~ 377 (862)
++.+|+.++... +.... .++..|++++......+...++..+..++.
T Consensus 338 a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 338 AAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 777777776542 11111 234455555554444444445555554444
No 20
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.42 E-value=5.8e-10 Score=137.52 Aligned_cols=480 Identities=12% Similarity=0.133 Sum_probs=296.4
Q ss_pred CcccchHHHhHhccCC-CcchHHHHHHHHHHhcCCC-C------cHHHHHHHHHHhhcCCC--CHHHHhHHHHHhcCC--
Q 002971 6 DVSSLFTDVVNCMQTE-NLELKKLVYLYLINYAKSQ-P------DLAILAVNTFVKDSQDP--NPLIRALAVRTMGCI-- 73 (862)
Q Consensus 6 dvs~lf~~vv~l~~s~-~~~~Kkl~Yl~l~~~~~~~-~------el~~L~intl~kDl~~~--n~~ir~lALr~l~~i-- 73 (862)
....+++.++.++.++ +...|..+...+..+.+.- + ...--++..+.+-+.++ ++.+|..|+++++.+
T Consensus 131 ~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 210 (861)
T 2bpt_A 131 AWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLI 210 (861)
T ss_dssp CCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGG
T ss_pred ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 3456788888888888 8777777766665554421 1 22334455566666776 899999999999874
Q ss_pred -Chhhh-----HHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccc--c-chHHHHHHhhcCCChhHHHHHHHHH
Q 002971 74 -RVDKI-----TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--R-GFLESLKDLISDNNPMVVANAVAAL 144 (862)
Q Consensus 74 -~~~~~-----~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~--~-~~~~~l~~lL~d~d~~V~~~a~~~l 144 (862)
....+ .+++.+.+.+.+.+.++-||+.|+.++.++...+|+.+.. . .+++.+...+.|.+..|...|+..+
T Consensus 211 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l 290 (861)
T 2bpt_A 211 FIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFW 290 (861)
T ss_dssp GCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 11111 2567888888999999999999999999999998876542 1 3556666778899999999999888
Q ss_pred HHHhhcCC----------------CC-cccccHHHHHHHHHHhccC------ChhHH-HHHHHHHhhccccc-HHHHHHH
Q 002971 145 AEIEENSS----------------RP-IFEITSHTLSKLLTALNEC------TEWGQ-VFILDALSRYKAAD-AREAENI 199 (862)
Q Consensus 145 ~~i~~~~~----------------~~-~~~l~~~~~~~Ll~~l~~~------~~w~q-~~iL~~L~~~~~~~-~~~~~~i 199 (862)
..++.... .. ........+..++..+.+. ++|.. ....+.|..+...- ......+
T Consensus 291 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l 370 (861)
T 2bpt_A 291 STICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPV 370 (861)
T ss_dssp HHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHH
Confidence 87765420 01 1112244556666666542 34642 23334443322110 1123456
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhChh-----
Q 002971 200 VERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPT----- 273 (862)
Q Consensus 200 l~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~----- 273 (862)
++.+...+++.+..+...|+.++..+.... .++.+......+.+.|...+ +.++.+|..++.++..++...+.
T Consensus 371 ~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~-~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 449 (861)
T 2bpt_A 371 LEFVEQNITADNWRNREAAVMAFGSIMDGP-DKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQ 449 (861)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSS-CHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTT
T ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCH
Confidence 677777888888889999998888775321 23444444455666677666 46789999999999988865322
Q ss_pred -hhhccce-EEEecCCCcHHHHHHHHHHHHHhcCc----------CcHHHHHHHHHHhhhhcc--HHHHHHHHHHHHHHH
Q 002971 274 -ILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASD----------RNIDQVLLEFKEYATEVD--VDFVRKAVRAIGRCA 339 (862)
Q Consensus 274 -~~~~~~~-~~~~l~~d~~~Ik~~~L~lL~~l~~~----------~Nv~~Iv~eL~~y~~~~d--~~~~~~~i~~I~~la 339 (862)
.+..-+. .+.++.+ +..+|..+...|..++.. .-+..|+..|...+.+.| ..++..++.+++.++
T Consensus 450 ~~~~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~ 528 (861)
T 2bpt_A 450 QHLPGVVQACLIGLQD-HPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMV 528 (861)
T ss_dssp TTHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHH
Confidence 1221122 1223434 477888888877766542 235678888887776433 678889999999998
Q ss_pred HhhhHhHHHH----HHHHHHHHhhh---------------cchhHHHHHHHHHHHHHhCcc----cHHHHHHHHHHhhcc
Q 002971 340 IKLERAAERC----ISVLLELIKIK---------------VNYVVQEAIIVIKDIFRRYPN----TYESIIATLCESLDT 396 (862)
Q Consensus 340 ~k~~~~~~~~----v~~ll~ll~~~---------------~~~v~~e~i~~l~~i~~~~p~----~~~~~i~~L~~~l~~ 396 (862)
...+.....+ +..+++.+... ...+...++..+..+++..++ ....++..+.+.+.+
T Consensus 529 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 608 (861)
T 2bpt_A 529 EYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEK 608 (861)
T ss_dssp HHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHS
T ss_pred HHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcc
Confidence 8765443333 44455555422 112334556677777776543 234455556665654
Q ss_pred CCchHHHHHHHHHHhhccccc-----CCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHH----HHHHHH
Q 002971 397 LDEPEAKASMIWIIGEYAERI-----DNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQM----IQVVLN 467 (862)
Q Consensus 397 ~~~~~~~~~~~wilGEy~~~i-----~~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~~~~~~~~~----i~~~l~ 467 (862)
...+..+..+++.+|...... +..+.++..+.+.+....+.+|...+.++..+.....+. ..+. +..+++
T Consensus 609 ~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~l~~~l~~ 687 (861)
T 2bpt_A 609 KDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEED-FRRYSDAMMNVLAQ 687 (861)
T ss_dssp TTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGG-GHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchh-ccchHHHHHHHHHH
Confidence 321144444444444332221 113455666665555566778888888887777665432 4433 333444
Q ss_pred hcccCCCChHHHHHHHHHHHH
Q 002971 468 NATVETDNPDLRDRAYIYWRL 488 (862)
Q Consensus 468 ~~~~~s~~~dvrdRA~~y~~l 488 (862)
.....+.++++|..|...+.-
T Consensus 688 ~l~~~~~~~~vr~~~~~~l~~ 708 (861)
T 2bpt_A 688 MISNPNARRELKPAVLSVFGD 708 (861)
T ss_dssp HHHCTTCCTTHHHHHHHHHHH
T ss_pred HhCCccccHhhhHHHHHHHHH
Confidence 322222358899988766543
No 21
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.39 E-value=3.6e-11 Score=146.30 Aligned_cols=440 Identities=12% Similarity=0.111 Sum_probs=282.8
Q ss_pred HHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccc---cccccchHHH
Q 002971 48 VNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLES 124 (862)
Q Consensus 48 intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~---~~~~~~~~~~ 124 (862)
+..+.++|.++++.+|..|++.++.+...++....++.+.++|.+.++.||+.|+.++.++....+. ++...+.++.
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~ 196 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA 196 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHH
Confidence 5788999999999999999999987766777788899999999999999999999999999875432 1212357888
Q ss_pred HHHhhcC-CChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHH-----HH
Q 002971 125 LKDLISD-NNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREA-----EN 198 (862)
Q Consensus 125 l~~lL~d-~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~-----~~ 198 (862)
|..+|.+ .|+.+..+|+.+|..+.........-.....+..|+..+...++-.+...+..|..+...+.... ..
T Consensus 197 Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g 276 (780)
T 2z6g_A 197 IVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAG 276 (780)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTT
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcC
Confidence 8888874 59999999999999886542110000112457788888888888888888888887764432211 13
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHH-Hhcccchhhccc-CC-hhHHHHHHHHHHHHHhhC---h
Q 002971 199 IVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC-KKMAPPLVTLLS-AE-PEIQYVALRNINLIVQRR---P 272 (862)
Q Consensus 199 il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~-~~~~~~L~~lls-~~-~~iry~aL~~l~~i~~~~---p 272 (862)
.+..+...+++.+..|.-.++.++-.+. ..+++....+. ...++.|+.++. .+ ...+..+...+..++... +
T Consensus 277 ~v~~Lv~lL~~~~~~v~~~a~~aL~~La--~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~ 354 (780)
T 2z6g_A 277 GLQKMVALLNKTNVKFLAITTDCLQILA--YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 354 (780)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHH--TTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHH
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHh--cCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHH
Confidence 4667788888888777666666655442 12444333222 133455677774 33 356667777777776421 1
Q ss_pred hhhhcc-ce-EEEecCCCcHHHHHHHHHHHHHhcCcC----cHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhHhH
Q 002971 273 TILAHE-IK-VFFCKYNDPIYVKMEKLEIMIKLASDR----NIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAA 346 (862)
Q Consensus 273 ~~~~~~-~~-~~~~l~~d~~~Ik~~~L~lL~~l~~~~----Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~ 346 (862)
.++... +. .+..+.+.+..+++.++..|..|+... ....++..|.+.+.+.|.++++.++.+++.++...+...
T Consensus 355 ~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~ 434 (780)
T 2z6g_A 355 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 434 (780)
T ss_dssp HHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 222221 12 223445667889999999999997543 356788889888988999999999999999876433222
Q ss_pred -----HHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHhCccc---HH-----HHHHHHHHhhccCCchHHHHHHHHHHh
Q 002971 347 -----ERCISVLLELIKIKVN--YVVQEAIIVIKDIFRRYPNT---YE-----SIIATLCESLDTLDEPEAKASMIWIIG 411 (862)
Q Consensus 347 -----~~~v~~ll~ll~~~~~--~v~~e~i~~l~~i~~~~p~~---~~-----~~i~~L~~~l~~~~~~~~~~~~~wilG 411 (862)
...++.|++++...++ .+...++..+.+|...+++. +. .++..|.+.+..-..+..+..++|.||
T Consensus 435 ~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~ 514 (780)
T 2z6g_A 435 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR 514 (780)
T ss_dssp HHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 1357888999887543 67777888888886555542 11 235667777765445678888999999
Q ss_pred hcccccC--------CH-HHHHHHHhhh----------------CCC--CCHHHHHHHHHHHHHHhhcCCCCChHH----
Q 002971 412 EYAERID--------NA-DELLESFLES----------------FPE--EPAQVQLQLLTATVKLFLKKPTEGPQQ---- 460 (862)
Q Consensus 412 Ey~~~i~--------~~-~~~l~~~~~~----------------~~~--e~~~v~~~iLta~~Kl~~~~~~~~~~~---- 460 (862)
..+..-. +. +.+++.+-.. +.. .+.+++...+.++.++.. .+. .+.
T Consensus 515 nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~-~~~--~~~~l~~ 591 (780)
T 2z6g_A 515 NLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR-DIH--NRIVIRG 591 (780)
T ss_dssp HHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT-SHH--HHHHHHH
T ss_pred HHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc-Chh--hHHHHHH
Confidence 8764211 11 1222222111 211 235678888888888863 221 121
Q ss_pred --HHHHHHHhcccCCCChHHHHHHHHHHHHhcCCHH
Q 002971 461 --MIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 494 (862)
Q Consensus 461 --~i~~~l~~~~~~s~~~dvrdRA~~y~~ll~~~~~ 494 (862)
.+..+.+.. .+.++++|..|...+.-|..+++
T Consensus 592 ~~~i~~Lv~lL--~~~~~~v~~~a~~aL~~L~~~~~ 625 (780)
T 2z6g_A 592 LNTIPLFVQLL--YSPIENIQRVAAGVLCELAQDKE 625 (780)
T ss_dssp TCCHHHHHHGG--GCSCHHHHHHHHHHHHHHHTSHH
T ss_pred CCcHHHHHHHH--cCCCHHHHHHHHHHHHHHhcCHH
Confidence 234555553 35789999998876555444443
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.39 E-value=5.7e-11 Score=138.45 Aligned_cols=333 Identities=13% Similarity=0.130 Sum_probs=225.5
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhc--cc--cccccchHHHHHHhhcCC-ChhHHHHHHHHHHHHhhcCCCCc
Q 002971 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN--AE--LVEDRGFLESLKDLISDN-NPMVVANAVAALAEIEENSSRPI 155 (862)
Q Consensus 81 ~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~--p~--~~~~~~~~~~l~~lL~d~-d~~V~~~a~~~l~~i~~~~~~~~ 155 (862)
..++.+.+.|.+.++.+|..|+.++.++.... |. .+...+.++.|..+|.+. ++.|...|+.+|..++...+...
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 34667778888999999999999999997653 32 233357899999999987 89999999999999986432111
Q ss_pred ccc-cHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHH-----HHHHHHHHhhcCCChHHHHHHHHHHHHhhhcc
Q 002971 156 FEI-TSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE-----NIVERVTPRLQHANCAVVLSAVKMILQQMELI 229 (862)
Q Consensus 156 ~~l-~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~-----~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~ 229 (862)
-.+ ....+..|+..+.+.++..+...+..|..+...++.... .++..+...+++.+..|...|+.++.++...-
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence 011 123466777777778899999999999888765443322 24567778888888899999999998875321
Q ss_pred CChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhChhhhh----cc-ce-EEEecCCCcHHHHHHHHHHHHH
Q 002971 230 TSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILA----HE-IK-VFFCKYNDPIYVKMEKLEIMIK 302 (862)
Q Consensus 230 ~~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~~~~----~~-~~-~~~~l~~d~~~Ik~~~L~lL~~ 302 (862)
++.........+.+.|+.++ +.+++++..++..|..|+...+.... .. +. .+.++.+++..++..++..|..
T Consensus 247 -~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~ 325 (530)
T 1wa5_B 247 -KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 325 (530)
T ss_dssp -SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred -CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHH
Confidence 01111122345677788888 46789999999999999876554221 11 12 2334556678899999999999
Q ss_pred hcCcCc--HH-----HHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhHhHH-----HHHHHHHHHHhhhcchhHHHHHH
Q 002971 303 LASDRN--ID-----QVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAE-----RCISVLLELIKIKVNYVVQEAII 370 (862)
Q Consensus 303 l~~~~N--v~-----~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~-----~~v~~ll~ll~~~~~~v~~e~i~ 370 (862)
++.... .. .++..|...+.+.+..++..++.+|+.++...+.... ..+..|++++......+..+++.
T Consensus 326 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~ 405 (530)
T 1wa5_B 326 IVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACW 405 (530)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 885432 22 3566677778778888999999999888753332221 24567777777666667777777
Q ss_pred HHHHHHHhC-c--ccHHH-----HHHHHHHhhccCCchHHHHHHHHHHhhccc
Q 002971 371 VIKDIFRRY-P--NTYES-----IIATLCESLDTLDEPEAKASMIWIIGEYAE 415 (862)
Q Consensus 371 ~l~~i~~~~-p--~~~~~-----~i~~L~~~l~~~~~~~~~~~~~wilGEy~~ 415 (862)
.+.++.... + +...+ ++..|++.+.+ .+++++..++|.++.+..
T Consensus 406 aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 406 AISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI-ADNRIIEVTLDALENILK 457 (530)
T ss_dssp HHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHH
Confidence 777776652 2 22222 34555555543 356666677777766543
No 23
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.39 E-value=9.2e-11 Score=142.77 Aligned_cols=469 Identities=12% Similarity=0.099 Sum_probs=284.5
Q ss_pred hHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhh-----h--HHHHH
Q 002971 11 FTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDK-----I--TEYLC 83 (862)
Q Consensus 11 f~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~-----~--~~~l~ 83 (862)
.+.+++.+.+.+.+.|+.+--.+ .+. ...+++.=++..|.+-|.+.++.+|..|+.+|++|...+ + .+.++
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l-~~~-~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i 194 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLI-NYQ-DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 194 (780)
T ss_dssp ---------CCSCHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHH-Hhh-hHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChH
Confidence 46677777887766655322222 222 223455556778888888999999999999999886321 1 13566
Q ss_pred HHHHhhhCC-CChHHHHHHHHHHHHHHhhcc--ccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccc-c
Q 002971 84 DPLQRCLKD-DDPYVRKTAAICVAKLYDINA--ELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI-T 159 (862)
Q Consensus 84 ~~v~~~l~d-~~~yVRk~A~~~l~kl~~~~p--~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l-~ 159 (862)
+.+.+.|.+ .++.+|+.|+.++.++..... +.+.+.+.++.|.++|.+.++.|...|+.+|..++.........+ .
T Consensus 195 ~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~ 274 (780)
T 2z6g_A 195 SAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRL 274 (780)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHH
Confidence 777777764 599999999999999765321 123334788999999999999999999999999987643321111 1
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHH-----HHHHHHHhhcCCChHHH-HHHHHHHHHhhhccCChH
Q 002971 160 SHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-----IVERVTPRLQHANCAVV-LSAVKMILQQMELITSTD 233 (862)
Q Consensus 160 ~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~-----il~~v~~~l~~~n~aV~-~eai~~i~~~~~~~~~~~ 233 (862)
...+..|++.+.+.++-.+...+..|..+...+++.... .++.+...+++.+...+ ..++.++..+.. +++
T Consensus 275 ~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~---~~~ 351 (780)
T 2z6g_A 275 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV---CSS 351 (780)
T ss_dssp TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT---STT
T ss_pred cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc---ChH
Confidence 345778888887766555555556665554433333222 34556667776665444 345555555431 222
Q ss_pred HHHHH-HHhcccchhhccc-CChhHHHHHHHHHHHHHhhChhh--hhccce-EEEecCCCcHHHHHHHHHHHHHhcCcC-
Q 002971 234 VVRNL-CKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTI--LAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASDR- 307 (862)
Q Consensus 234 ~~~~~-~~~~~~~L~~lls-~~~~iry~aL~~l~~i~~~~p~~--~~~~~~-~~~~l~~d~~~Ik~~~L~lL~~l~~~~- 307 (862)
....+ ...+++.|+.++. .++.++.-++..|..++...+.. ...-+. .+..+.+++..+|..+..+|..|+...
T Consensus 352 ~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~ 431 (780)
T 2z6g_A 352 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 431 (780)
T ss_dssp HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence 22222 1234567777774 56788888999999998765431 111112 122456778899999999999998753
Q ss_pred -cHHH-----HHHHHHHhhhhc-c-HHHHHHHHHHHHHHHHhhhHh--H------HHHHHHHHHHHhhhcc-hhHHHHHH
Q 002971 308 -NIDQ-----VLLEFKEYATEV-D-VDFVRKAVRAIGRCAIKLERA--A------ERCISVLLELIKIKVN-YVVQEAII 370 (862)
Q Consensus 308 -Nv~~-----Iv~eL~~y~~~~-d-~~~~~~~i~~I~~la~k~~~~--~------~~~v~~ll~ll~~~~~-~v~~e~i~ 370 (862)
+... .+..|.+.+.+. + .+++..++++|+.++...+.. . ...+..|+++|..... .+..++..
T Consensus 432 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~ 511 (780)
T 2z6g_A 432 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 511 (780)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHH
Confidence 3322 455666666553 3 389999999999987543221 1 1347788888887765 78888888
Q ss_pred HHHHHHHhCcccHH-----HHHHHHHHhhccCCchHHHHHHHHH----------------------HhhcccccCCH---
Q 002971 371 VIKDIFRRYPNTYE-----SIIATLCESLDTLDEPEAKASMIWI----------------------IGEYAERIDNA--- 420 (862)
Q Consensus 371 ~l~~i~~~~p~~~~-----~~i~~L~~~l~~~~~~~~~~~~~wi----------------------lGEy~~~i~~~--- 420 (862)
.+.++... ++.+. .++..|++.+.+ ..++.+..++|. |+..+....+.
T Consensus 512 aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l 589 (780)
T 2z6g_A 512 LIRNLALC-PANHAPLREQGAIPRLVQLLVR-AHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVI 589 (780)
T ss_dssp HHHHHHSS-HHHHHHHHHTTHHHHHHHHHHH-HHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHhcC-HHHHHHHHHCCCHHHHHHHHHh-cchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHH
Confidence 88888753 33222 245566665542 122233333343 33322110000
Q ss_pred --HHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHH------HHHHHHhcccCCCChHHHHHHHHHHHHhcC
Q 002971 421 --DELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQM------IQVVLNNATVETDNPDLRDRAYIYWRLLST 491 (862)
Q Consensus 421 --~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~~~~~~~~~------i~~~l~~~~~~s~~~dvrdRA~~y~~ll~~ 491 (862)
...+..|++-+...++.+|...+.++..+... ++ .+.. +..+.+.. .+.|++||..|..-+.-+..
T Consensus 590 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~-~~--~~~~i~~~g~i~~L~~Ll--~~~~~~Vr~~A~~aL~~l~~ 663 (780)
T 2z6g_A 590 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-KE--AAEAIEAEGATAPLTELL--HSRNEGVATYAAAVLFRMSE 663 (780)
T ss_dssp HHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS-HH--HHHHHHHTTCHHHHHHGG--GCSCHHHHHHHHHHHHHHHT
T ss_pred HHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-HH--HHHHHHHCCCHHHHHHHH--cCCCHHHHHHHHHHHHHHHc
Confidence 11234555556677899999999998888632 21 2222 33455542 46899999999877655543
No 24
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.37 E-value=2.1e-10 Score=141.87 Aligned_cols=472 Identities=13% Similarity=0.053 Sum_probs=275.3
Q ss_pred HhHhccCCCcchHHHHHHHHHHhcCCCCcHHH-----HHHHHHHhhcCCCCHHHHhHHHHHhcCCChhh-----------
Q 002971 14 VVNCMQTENLELKKLVYLYLINYAKSQPDLAI-----LAVNTFVKDSQDPNPLIRALAVRTMGCIRVDK----------- 77 (862)
Q Consensus 14 vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~-----L~intl~kDl~~~n~~ir~lALr~l~~i~~~~----------- 77 (862)
+..++.+.+...|+.++-.+..++...++... -++..+.+-+.+.++.+|..|+.+++.+....
T Consensus 222 l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~ 301 (876)
T 1qgr_A 222 VCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAA 301 (876)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhcccc
Confidence 34466777888888888888887766654311 34555566677889999999998887664321
Q ss_pred ----------------hHHHHHHHHHhhhC-------CCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCCh
Q 002971 78 ----------------ITEYLCDPLQRCLK-------DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNP 134 (862)
Q Consensus 78 ----------------~~~~l~~~v~~~l~-------d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~ 134 (862)
..+.+++.+.+.+. |.++.+|+.|+.|+..+....++.+-+ .+++.+...|.|.++
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~-~~l~~l~~~l~~~~~ 380 (876)
T 1qgr_A 302 EQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-HVLPFIKEHIKNPDW 380 (876)
T ss_dssp HHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHH-HHHHHHHHHTTCSSH
T ss_pred ccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHH-HHHHHHHHHccCCCh
Confidence 22456666767765 457899999999999998877754432 477888899999999
Q ss_pred hHHHHHHHHHHHHhhcCCCC-cccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccc------cHHHHHHHHHHHHHhh
Q 002971 135 MVVANAVAALAEIEENSSRP-IFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAA------DAREAENIVERVTPRL 207 (862)
Q Consensus 135 ~V~~~a~~~l~~i~~~~~~~-~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~------~~~~~~~il~~v~~~l 207 (862)
.+..+|+.++..+...-+.. .-......+..++..+.+.++..+...+..|.++... .......+++.+...+
T Consensus 381 ~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l 460 (876)
T 1qgr_A 381 RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL 460 (876)
T ss_dssp HHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHH
Confidence 99999999999987543211 1123445677777888888888887777777766533 1233456777777777
Q ss_pred cCCChHHHHHHHHHHHHhhhccC------------ChHHHHHHHHhcccchhhcccC----ChhHHHHHHHHHHHHH---
Q 002971 208 QHANCAVVLSAVKMILQQMELIT------------STDVVRNLCKKMAPPLVTLLSA----EPEIQYVALRNINLIV--- 268 (862)
Q Consensus 208 ~~~n~aV~~eai~~i~~~~~~~~------------~~~~~~~~~~~~~~~L~~lls~----~~~iry~aL~~l~~i~--- 268 (862)
.+. +.|...|+.++..+..... ..+.+......+.+.|..++.. +.++|..+++++..++
T Consensus 461 ~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~ 539 (876)
T 1qgr_A 461 SAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNS 539 (876)
T ss_dssp TSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTC
T ss_pred cCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHC
Confidence 764 7777777777766543211 0000011111233333444321 2345544444444443
Q ss_pred -----------------------------------------------------hhCh-hhhhccce-----EEEecCCCc
Q 002971 269 -----------------------------------------------------QRRP-TILAHEIK-----VFFCKYNDP 289 (862)
Q Consensus 269 -----------------------------------------------------~~~p-~~~~~~~~-----~~~~l~~d~ 289 (862)
...+ ..+.++.. .+.++.+..
T Consensus 540 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 619 (876)
T 1qgr_A 540 AKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTA 619 (876)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC----
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhcc
Confidence 3322 22222211 111222221
Q ss_pred --HHHHHHHHHHHHHhcCc------CcHHHHHHHHHHhhhhc-cHHHHHHHHHHHHHHHHhhh----HhHHHHHHHHHHH
Q 002971 290 --IYVKMEKLEIMIKLASD------RNIDQVLLEFKEYATEV-DVDFVRKAVRAIGRCAIKLE----RAAERCISVLLEL 356 (862)
Q Consensus 290 --~~Ik~~~L~lL~~l~~~------~Nv~~Iv~eL~~y~~~~-d~~~~~~~i~~I~~la~k~~----~~~~~~v~~ll~l 356 (862)
.++|..++.++..++.. .-+..++..|...+.+. +.+++..++..++.++.... +....++..+++.
T Consensus 620 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~ 699 (876)
T 1qgr_A 620 GSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLEN 699 (876)
T ss_dssp -CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 36777778777776642 22455666666666665 67788888888888776543 3344556666666
Q ss_pred Hhhh--cchhHHHHHHHHHHHHHhCccc----HHHHHHHHHHhhccCC---ch-------HHHHHHH-------HHHhhc
Q 002971 357 IKIK--VNYVVQEAIIVIKDIFRRYPNT----YESIIATLCESLDTLD---EP-------EAKASMI-------WIIGEY 413 (862)
Q Consensus 357 l~~~--~~~v~~e~i~~l~~i~~~~p~~----~~~~i~~L~~~l~~~~---~~-------~~~~~~~-------wilGEy 413 (862)
+... ...+...++..+.++....++. -..++..+.+.+..-. ++ ..+..+. -.+|+.
T Consensus 700 l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~ 779 (876)
T 1qgr_A 700 LGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGD 779 (876)
T ss_dssp HTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred hCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 6552 2346666667777776543322 2234444444332111 11 2222222 123331
Q ss_pred --------ccccCCHHHHHHHHhhhCCCC--CHHHHHHHHHHHHHHhhcCCC-CChH-----HHHHHHHHhcccCCCChH
Q 002971 414 --------AERIDNADELLESFLESFPEE--PAQVQLQLLTATVKLFLKKPT-EGPQ-----QMIQVVLNNATVETDNPD 477 (862)
Q Consensus 414 --------~~~i~~~~~~l~~~~~~~~~e--~~~v~~~iLta~~Kl~~~~~~-~~~~-----~~i~~~l~~~~~~s~~~d 477 (862)
....+..+.++..+.....+. +..+|...+.++.++....+. . .. ..+..+++.+. ++.+++
T Consensus 780 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~~~i~~ll~~~l-~~~~~~ 857 (876)
T 1qgr_A 780 QENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDV-LKLVEARPMIHELLTEGR-RSKTNK 857 (876)
T ss_dssp SSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHH-HHHHHTSHHHHHHHHHHH-HCSCHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHH-HHHHHhcHHHHHHHHHHh-hcCCHh
Confidence 011111234443332222334 678898888888888876654 2 22 34555666444 457889
Q ss_pred HHHHHHHHHHHh
Q 002971 478 LRDRAYIYWRLL 489 (862)
Q Consensus 478 vrdRA~~y~~ll 489 (862)
+|+-|..-...+
T Consensus 858 ~r~~a~~a~~~~ 869 (876)
T 1qgr_A 858 AKTLARWATKEL 869 (876)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998887765544
No 25
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.35 E-value=1.9e-10 Score=147.64 Aligned_cols=441 Identities=11% Similarity=0.121 Sum_probs=285.2
Q ss_pred cchHHHhHhccCCCcchHHHHHHHHHHhcCCCCc-HHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---hh--------
Q 002971 9 SLFTDVVNCMQTENLELKKLVYLYLINYAKSQPD-LAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---VD-------- 76 (862)
Q Consensus 9 ~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~e-l~~L~intl~kDl~~~n~~ir~lALr~l~~i~---~~-------- 76 (862)
.+.+.+++.+.+++...|+.+...+..+++.-++ ..--+++.+.+.+.|+++.+|..|..+++.+. .+
T Consensus 48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~ 127 (1230)
T 1u6g_C 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALA 127 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchH
Confidence 4566777888899999999999999998876544 33456778888899999999999988888764 22
Q ss_pred -hhHHHHHHHHHhhhCC-CChHHHHHHHHHHHHHHhhccccccc--cchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCC
Q 002971 77 -KITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (862)
Q Consensus 77 -~~~~~l~~~v~~~l~d-~~~yVRk~A~~~l~kl~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~ 152 (862)
...+.+++.+.+++.| .++.+|..|+.++..+....++.+.. ..+++.+...|.|.++.|...|+.++..+....+
T Consensus 128 ~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~ 207 (1230)
T 1u6g_C 128 ANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCG 207 (1230)
T ss_dssp HHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcC
Confidence 2578899999999994 89999999999999999776654432 2466777788899999999999999999887654
Q ss_pred CCcccccHHHHHHHHHHhccCChh----HHHHHHHHHhhcccccH-HHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhh
Q 002971 153 RPIFEITSHTLSKLLTALNECTEW----GQVFILDALSRYKAADA-REAENIVERVTPRLQHANCAVVLSAVKMILQQME 227 (862)
Q Consensus 153 ~~~~~l~~~~~~~Ll~~l~~~~~w----~q~~iL~~L~~~~~~~~-~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~ 227 (862)
... ....+..++..+.+.++| .-+..+..+....+... .....+++.+...+++.++.|.-.++.++..+..
T Consensus 208 ~~~---~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~ 284 (1230)
T 1u6g_C 208 NIV---FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVR 284 (1230)
T ss_dssp ------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 333 233456666666544332 12233333332222110 1123566777777777777666555555554433
Q ss_pred ccCChHHHHHHHHhcccchhhcccC--------------------------------------ChhHHHHHHHHHHHHHh
Q 002971 228 LITSTDVVRNLCKKMAPPLVTLLSA--------------------------------------EPEIQYVALRNINLIVQ 269 (862)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~L~~lls~--------------------------------------~~~iry~aL~~l~~i~~ 269 (862)
..+. + ++.....+.+.+...+.. ..++|..++..+..++.
T Consensus 285 ~~~~-~-~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~ 362 (1230)
T 1u6g_C 285 RCPK-E-VYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVS 362 (1230)
T ss_dssp CTTC-C-CHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHT
T ss_pred HChH-H-HHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHH
Confidence 2221 1 111112233333333321 12479999999999998
Q ss_pred hChhhhhccce----E-EEecCCCcHHHHHHHHHHHHHhcCc-------------------------CcHHHHHHHHHHh
Q 002971 270 RRPTILAHEIK----V-FFCKYNDPIYVKMEKLEIMIKLASD-------------------------RNIDQVLLEFKEY 319 (862)
Q Consensus 270 ~~p~~~~~~~~----~-~~~l~~d~~~Ik~~~L~lL~~l~~~-------------------------~Nv~~Iv~eL~~y 319 (862)
..|+.+.+++. . ...+.+....+|..+++.+..++.. ..+..|+.-+.+.
T Consensus 363 ~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~ 442 (1230)
T 1u6g_C 363 TRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQ 442 (1230)
T ss_dssp TCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHH
T ss_pred hchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHH
Confidence 77765544331 1 1234455688999999887766531 1122344444445
Q ss_pred hhhccHHHHHHHHHHHHHHHHhhh----HhHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHhC-ccc----HHHHHH
Q 002971 320 ATEVDVDFVRKAVRAIGRCAIKLE----RAAERCISVLLELIKIKVN--YVVQEAIIVIKDIFRRY-PNT----YESIIA 388 (862)
Q Consensus 320 ~~~~d~~~~~~~i~~I~~la~k~~----~~~~~~v~~ll~ll~~~~~--~v~~e~i~~l~~i~~~~-p~~----~~~~i~ 388 (862)
+.+.+...|..++..++.++...+ +..+.++..+++++..... .+..+++..+..++... ++. ...++.
T Consensus 443 l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp 522 (1230)
T 1u6g_C 443 MKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVP 522 (1230)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHH
T ss_pred hccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHH
Confidence 777888888889999999887643 4456778888888877653 67777777887777643 332 223455
Q ss_pred HHHHhhccCCchHHHHHHHHHHhhcccccCC------------HHHHHHHHhhhC--CCCCHHHHHHHHHHHHHHhhcCC
Q 002971 389 TLCESLDTLDEPEAKASMIWIIGEYAERIDN------------ADELLESFLESF--PEEPAQVQLQLLTATVKLFLKKP 454 (862)
Q Consensus 389 ~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~------------~~~~l~~~~~~~--~~e~~~v~~~iLta~~Kl~~~~~ 454 (862)
.+.+.+.+ ..+.++..+++.+++....+.. ...++..++..+ .+.+.++|...+.++..+.....
T Consensus 523 ~L~~~l~d-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g 601 (1230)
T 1u6g_C 523 PVVACVGD-PFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLG 601 (1230)
T ss_dssp HHHHHHTC-SSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHcc-cchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 55555554 2344444555666655432211 246677777766 66788999999999999987654
Q ss_pred C
Q 002971 455 T 455 (862)
Q Consensus 455 ~ 455 (862)
+
T Consensus 602 ~ 602 (1230)
T 1u6g_C 602 D 602 (1230)
T ss_dssp G
T ss_pred c
Confidence 3
No 26
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.34 E-value=3.9e-09 Score=122.20 Aligned_cols=338 Identities=16% Similarity=0.140 Sum_probs=234.2
Q ss_pred cchHHHhHhccCCCcchHHHHHHHHHHhcC--CCCcHHHH----HHHHHHhhcC-CCCHHHHhHHHHHhcCCC--hhhhH
Q 002971 9 SLFTDVVNCMQTENLELKKLVYLYLINYAK--SQPDLAIL----AVNTFVKDSQ-DPNPLIRALAVRTMGCIR--VDKIT 79 (862)
Q Consensus 9 ~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~--~~~el~~L----~intl~kDl~-~~n~~ir~lALr~l~~i~--~~~~~ 79 (862)
+-..++|+.+.|+|.+.+.-+--.+..+.. .+|..-.+ ++..|.+-|. +.++.++..|.++|++|. +++-.
T Consensus 57 ~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 57 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 447899999999999999888888876543 34432111 3667888886 457899988988888874 44444
Q ss_pred HH-----HHHHHHhhhCCCChHHHHHHHHHHHHHHhhccc---cccccchHHHHHHhhcCCCh-----hHHHHHHHHHHH
Q 002971 80 EY-----LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNP-----MVVANAVAALAE 146 (862)
Q Consensus 80 ~~-----l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~---~~~~~~~~~~l~~lL~d~d~-----~V~~~a~~~l~~ 146 (862)
.. .++.+.++|.++++.||..|+.|+..+...+|+ .+...+.++.|..+|.+.+. .++.+++.++..
T Consensus 137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 216 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 216 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence 33 478899999999999999999999999876664 34445778999999986553 456788888888
Q ss_pred HhhcC-CCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHH-----HHHHHHHhhcCCChHHHHHHHH
Q 002971 147 IEENS-SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-----IVERVTPRLQHANCAVVLSAVK 220 (862)
Q Consensus 147 i~~~~-~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~-----il~~v~~~l~~~n~aV~~eai~ 220 (862)
++... +...+......+..|.+.+...++..+...+..|..+...+.+.... ++..+..++++.+..|...+++
T Consensus 217 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~ 296 (510)
T 3ul1_B 217 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 296 (510)
T ss_dssp HHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred HhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHH
Confidence 87653 22234444566777888888889999888888888776554433332 3567788899999999999999
Q ss_pred HHHHhhhccCChHHHHHH-HHhcccchhhcc-cCChhHHHHHHHHHHHHHhhChhhhhccceEEEecCCCcHHHHHHHHH
Q 002971 221 MILQQMELITSTDVVRNL-CKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLE 298 (862)
Q Consensus 221 ~i~~~~~~~~~~~~~~~~-~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~ 298 (862)
++.++.. .++.....+ -..+.+.|..+| +.++++|..+..+|..|+...+....
T Consensus 297 aL~nl~~--~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~---------------------- 352 (510)
T 3ul1_B 297 AIGNIVT--GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ---------------------- 352 (510)
T ss_dssp HHHHHTT--SCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHH----------------------
T ss_pred HHHHhhc--CCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHH----------------------
Confidence 9988742 233332222 224566777888 46778999999999888764432110
Q ss_pred HHHHhcCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhHhH------HHHHHHHHHHHhhhcchhHHHHHHHH
Q 002971 299 IMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAA------ERCISVLLELIKIKVNYVVQEAIIVI 372 (862)
Q Consensus 299 lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~------~~~v~~ll~ll~~~~~~v~~e~i~~l 372 (862)
.+ .+ . .++..|...+.+.+.+++++++.+|+.++....... .-++..|+++|+.....+...++..+
T Consensus 353 ~v---~~-~---g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL 425 (510)
T 3ul1_B 353 QV---VN-H---GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAI 425 (510)
T ss_dssp HH---HH-T---THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HH---Hh-c---CCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHH
Confidence 00 11 1 245556666777888899999999988876432211 12366777777776666666666666
Q ss_pred HHHHH
Q 002971 373 KDIFR 377 (862)
Q Consensus 373 ~~i~~ 377 (862)
.+|++
T Consensus 426 ~nil~ 430 (510)
T 3ul1_B 426 SNIFQ 430 (510)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 27
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.33 E-value=5.9e-10 Score=129.42 Aligned_cols=436 Identities=11% Similarity=0.096 Sum_probs=265.1
Q ss_pred CcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChh-----hhH--HHHHHHHHhhhCC-CChHHHHHHHHHHHHHHhhc
Q 002971 41 PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVD-----KIT--EYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDIN 112 (862)
Q Consensus 41 ~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~-----~~~--~~l~~~v~~~l~d-~~~yVRk~A~~~l~kl~~~~ 112 (862)
++...-++..|.+-|.++++.+|..|+.+|+++... .+. +..++.+.+.|.+ .++.+|+.|+.++.++...
T Consensus 12 ~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~- 90 (529)
T 1jdh_A 12 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH- 90 (529)
T ss_dssp -----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-
T ss_pred hhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-
Confidence 344455678888888899999999999999988632 122 2567778888865 5899999999999998653
Q ss_pred cc---cccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccc-cHHHHHHHHHHhccCChhHHHHHHHHHhhc
Q 002971 113 AE---LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI-TSHTLSKLLTALNECTEWGQVFILDALSRY 188 (862)
Q Consensus 113 p~---~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l-~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~ 188 (862)
++ .+.+.+.++.|.++|.+.|+.|...|+.+|..++.......-.+ ....+..|++.+.+.++-.+......|..+
T Consensus 91 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~l 170 (529)
T 1jdh_A 91 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 22 22234788999999999999999999999999987753321111 235677888888777666666666677666
Q ss_pred ccccHHHHHH-----HHHHHHHhhcCCCh-HHHHHHHHHHHHhhhccCChHHHHHHH-Hhcccchhhcc-cCChhHHHHH
Q 002971 189 KAADAREAEN-----IVERVTPRLQHANC-AVVLSAVKMILQQMELITSTDVVRNLC-KKMAPPLVTLL-SAEPEIQYVA 260 (862)
Q Consensus 189 ~~~~~~~~~~-----il~~v~~~l~~~n~-aV~~eai~~i~~~~~~~~~~~~~~~~~-~~~~~~L~~ll-s~~~~iry~a 260 (862)
...+++.... .++.+...+++.++ .+...+.+++.++.. +++....+. ...+++|+.++ +.++.++.-+
T Consensus 171 a~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a 247 (529)
T 1jdh_A 171 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV---CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 247 (529)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT---STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHH
T ss_pred HhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc---CcccHHHHHHCCCHHHHHHHHhCCChHHHHHH
Confidence 5444333222 24455556655444 455556677666532 333322222 24566677777 4578899999
Q ss_pred HHHHHHHHhhChhh--hhccce-EEEecCCCcHHHHHHHHHHHHHhcCcC--cHHHH-----HHHHHHhhhhc--cHHHH
Q 002971 261 LRNINLIVQRRPTI--LAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASDR--NIDQV-----LLEFKEYATEV--DVDFV 328 (862)
Q Consensus 261 L~~l~~i~~~~p~~--~~~~~~-~~~~l~~d~~~Ik~~~L~lL~~l~~~~--Nv~~I-----v~eL~~y~~~~--d~~~~ 328 (862)
+..|..++...+.. ....+. .+..+.+++..++..+...|..|+..+ +...+ ++.|.+.+.+. +.+++
T Consensus 248 ~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~ 327 (529)
T 1jdh_A 248 LWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 327 (529)
T ss_dssp HHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHH
Confidence 99999998754421 111122 122356778899999999999998743 44433 45566666542 36899
Q ss_pred HHHHHHHHHHHHhhhHhHH--------HHHHHHHHHHhhhcc-hhHHHHHHHHHHHHHhCcccHH-----HHHHHHHHhh
Q 002971 329 RKAVRAIGRCAIKLERAAE--------RCISVLLELIKIKVN-YVVQEAIIVIKDIFRRYPNTYE-----SIIATLCESL 394 (862)
Q Consensus 329 ~~~i~~I~~la~k~~~~~~--------~~v~~ll~ll~~~~~-~v~~e~i~~l~~i~~~~p~~~~-----~~i~~L~~~l 394 (862)
..++.+++.++...+.... ..++.+++++....+ .+..+++..+.++... ++.+. .++..|++.+
T Consensus 328 ~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~~i~~L~~ll 406 (529)
T 1jdh_A 328 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLL 406 (529)
T ss_dssp HHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC-hhhhHHHHHcCCHHHHHHHH
Confidence 9999999998754322211 236778888887764 6778888888888754 33333 2456666666
Q ss_pred ccCCchHHHHHHHHHHhh--ccccc-----------------CCHH--------HHHHHHhhhCCCCCHHHHHHHHHHHH
Q 002971 395 DTLDEPEAKASMIWIIGE--YAERI-----------------DNAD--------ELLESFLESFPEEPAQVQLQLLTATV 447 (862)
Q Consensus 395 ~~~~~~~~~~~~~wilGE--y~~~i-----------------~~~~--------~~l~~~~~~~~~e~~~v~~~iLta~~ 447 (862)
.+ .+++.+..++|.++. +..-. .++. ..+..+++-..+..+.+|.....++.
T Consensus 407 ~~-~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~ 485 (529)
T 1jdh_A 407 VR-AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 485 (529)
T ss_dssp HH-HHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HH-HhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHH
Confidence 53 245566677887775 32210 0000 11233444444556777777777766
Q ss_pred HHhhcCCCCChHHH------HHHHHHhcccCCCChHHHHHHHHHHH
Q 002971 448 KLFLKKPTEGPQQM------IQVVLNNATVETDNPDLRDRAYIYWR 487 (862)
Q Consensus 448 Kl~~~~~~~~~~~~------i~~~l~~~~~~s~~~dvrdRA~~y~~ 487 (862)
.+... ++ .... +..+.+. .++.|++||.+|.....
T Consensus 486 ~l~~~-~~--~~~~i~~~~~~~~L~~l--~~~~~~~v~~~a~~aL~ 526 (529)
T 1jdh_A 486 ELAQD-KE--AAEAIEAEGATAPLTEL--LHSRNEGVATYAAAVLF 526 (529)
T ss_dssp HHTTS-HH--HHHHHHHTTCHHHHHHG--GGCSSHHHHHHHHHHHH
T ss_pred HHhcC-HH--HHHHHHHcCChHHHHHH--hcCCCHHHHHHHHHHHH
Confidence 66532 11 1111 2233333 23567888887765543
No 28
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.33 E-value=4.4e-10 Score=130.81 Aligned_cols=329 Identities=13% Similarity=0.107 Sum_probs=222.4
Q ss_pred HHHHHhhhCCCChHHHHHHHHHHHHHHhhcc----ccccccchHHHHHHhhcCCC-hhHHHHHHHHHHHHhhcCCCCccc
Q 002971 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDINA----ELVEDRGFLESLKDLISDNN-PMVVANAVAALAEIEENSSRPIFE 157 (862)
Q Consensus 83 ~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p----~~~~~~~~~~~l~~lL~d~d-~~V~~~a~~~l~~i~~~~~~~~~~ 157 (862)
++.+.+.|.+.++.+|..|+.++.++....+ +.+...+.++.|..+|.+.+ +.+...|+.+|..++...+.....
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 155 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV 155 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 6677888899999999999999999977554 12233578999999999876 999999999999998753221111
Q ss_pred -ccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHH-----HHHHHHHhh-cCCChHHHHHHHHHHHHhhhccC
Q 002971 158 -ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-----IVERVTPRL-QHANCAVVLSAVKMILQQMELIT 230 (862)
Q Consensus 158 -l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~-----il~~v~~~l-~~~n~aV~~eai~~i~~~~~~~~ 230 (862)
.....+..|+..+.+.++-.+...+..|..+...++..... .+..+...+ .+.+..+...|+.++.++...-+
T Consensus 156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~ 235 (528)
T 4b8j_A 156 VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP 235 (528)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSS
T ss_pred HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 11246778888888888888888888888876554433222 345666777 56788999999999988754211
Q ss_pred ChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhChhhh----hc-cce-EEEecCCCcHHHHHHHHHHHHHh
Q 002971 231 STDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTIL----AH-EIK-VFFCKYNDPIYVKMEKLEIMIKL 303 (862)
Q Consensus 231 ~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~~~----~~-~~~-~~~~l~~d~~~Ik~~~L~lL~~l 303 (862)
.+. ......+++.|+.++ +.+++++.-++.+|..++...+... .. -+. .+.++.+.+..++..++..|..+
T Consensus 236 ~~~--~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl 313 (528)
T 4b8j_A 236 QPS--FEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI 313 (528)
T ss_dssp CCC--HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCc--HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 111 122334666777777 5688999999999999986554321 11 122 23355666788899999999888
Q ss_pred cCcC--cHHH-----HHHHHHHhhhhc-cHHHHHHHHHHHHHHHHhhhHhHH-----HHHHHHHHHHhhhcchhHHHHHH
Q 002971 304 ASDR--NIDQ-----VLLEFKEYATEV-DVDFVRKAVRAIGRCAIKLERAAE-----RCISVLLELIKIKVNYVVQEAII 370 (862)
Q Consensus 304 ~~~~--Nv~~-----Iv~eL~~y~~~~-d~~~~~~~i~~I~~la~k~~~~~~-----~~v~~ll~ll~~~~~~v~~e~i~ 370 (862)
+... .... ++..|...+.+. +..++..++.+|+.++...+.... ..+..|++++......+..+++.
T Consensus 314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~ 393 (528)
T 4b8j_A 314 VTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAW 393 (528)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 8632 2222 356677777777 888888888888888753222211 33567777777776677777777
Q ss_pred HHHHHHHh-CcccHHH-----HHHHHHHhhccCCchHHHHHHHHHHhhcc
Q 002971 371 VIKDIFRR-YPNTYES-----IIATLCESLDTLDEPEAKASMIWIIGEYA 414 (862)
Q Consensus 371 ~l~~i~~~-~p~~~~~-----~i~~L~~~l~~~~~~~~~~~~~wilGEy~ 414 (862)
.+.++... .++...+ ++..|++.+.+ .+++++..++|.++...
T Consensus 394 aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~d~~v~~~al~~L~~l~ 442 (528)
T 4b8j_A 394 AISNATSGGSHDQIKYLVSEGCIKPLCDLLIC-PDIRIVTVCLEGLENIL 442 (528)
T ss_dssp HHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHH
Confidence 77777766 4444333 34556665554 35566666666666543
No 29
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.32 E-value=4.2e-10 Score=134.35 Aligned_cols=370 Identities=14% Similarity=0.138 Sum_probs=258.4
Q ss_pred chHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHH----HHHHHHhhcCCCCHHHHhHHHHHhcCCCh--------hh
Q 002971 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAIL----AVNTFVKDSQDPNPLIRALAVRTMGCIRV--------DK 77 (862)
Q Consensus 10 lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L----~intl~kDl~~~n~~ir~lALr~l~~i~~--------~~ 77 (862)
..+.++.+++|++...++-++-++...+.. ++.... -+..|.+=+++.++.+|..|+-.||+++. +.
T Consensus 291 ~v~~li~Ll~s~~~~~q~~A~~al~~aa~~-~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~ 369 (810)
T 3now_A 291 ILQMILAMATTDDELQQRVACECLIAASSK-KDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRP 369 (810)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHTTS-HHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCS
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-cHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccc
Confidence 456778899999999999999999886554 442222 24566677778899999999999998752 22
Q ss_pred h----HHHHHHHHHhhhCCC--ChHHHHHHHHHHHHHHhhcc---ccccccchHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 002971 78 I----TEYLCDPLQRCLKDD--DPYVRKTAAICVAKLYDINA---ELVEDRGFLESLKDLISDNNPMVVANAVAALAEIE 148 (862)
Q Consensus 78 ~----~~~l~~~v~~~l~d~--~~yVRk~A~~~l~kl~~~~p---~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~ 148 (862)
+ ++.+++.+.++|.++ ++-+|+.|+.|+..+-...+ +++.+.++++.|..+|...|+.++..|+.+|..|.
T Consensus 370 ~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt 449 (810)
T 3now_A 370 FGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLC 449 (810)
T ss_dssp STTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHT
T ss_pred hhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHc
Confidence 2 357788899999987 89999999999999875433 34445689999999999999999999999999998
Q ss_pred hcCCCC-----------c----------------------ccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHH
Q 002971 149 ENSSRP-----------I----------------------FEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADARE 195 (862)
Q Consensus 149 ~~~~~~-----------~----------------------~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~ 195 (862)
...... . .-+....+..|+..+...++=.|....+.|..+.. +++.
T Consensus 450 ~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~ 528 (810)
T 3now_A 450 NAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKEL 528 (810)
T ss_dssp TCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHH
T ss_pred CCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHH
Confidence 742100 0 00111345566666777788888888888888763 4433
Q ss_pred HHHH-----HHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHH--HHHHHhcccchhhcccCC--hhHHHHHHHHHHH
Q 002971 196 AENI-----VERVTPRLQHANCAVVLSAVKMILQQMELITSTDVV--RNLCKKMAPPLVTLLSAE--PEIQYVALRNINL 266 (862)
Q Consensus 196 ~~~i-----l~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~--~~~~~~~~~~L~~lls~~--~~iry~aL~~l~~ 266 (862)
...+ +..+..++++....+...|+.++.++.-. .+++.. .+....++++|+.||+.+ ...++-++.+|..
T Consensus 529 r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~-~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~N 607 (810)
T 3now_A 529 RGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGIT-INPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTN 607 (810)
T ss_dssp HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-SCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcC-CChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 3333 45677788888888889999998876422 344332 111124778999999643 3456889999999
Q ss_pred HHhhChh----hhhc-cce-EEEecCCCcHHHHHHHHHHHHHhcCcCcH-HH------HHHHHHHhhhhccHHHHHHHHH
Q 002971 267 IVQRRPT----ILAH-EIK-VFFCKYNDPIYVKMEKLEIMIKLASDRNI-DQ------VLLEFKEYATEVDVDFVRKAVR 333 (862)
Q Consensus 267 i~~~~p~----~~~~-~~~-~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv-~~------Iv~eL~~y~~~~d~~~~~~~i~ 333 (862)
|+...++ ++.. -+. ...++.+++..|++.++++|..|+..... .. .+.-|..++...|.+.++.+..
T Consensus 608 La~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ 687 (810)
T 3now_A 608 LASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAG 687 (810)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHH
Confidence 9876433 2221 122 33455677788999999999998864322 22 3445667777888899999999
Q ss_pred HHHHHHHhhhHhHH------HHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCccc
Q 002971 334 AIGRCAIKLERAAE------RCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNT 382 (862)
Q Consensus 334 ~I~~la~k~~~~~~------~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~ 382 (862)
+|+.++...+.... ..+..|++++..+...+..++...+.++....++.
T Consensus 688 ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~ 742 (810)
T 3now_A 688 ALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEI 742 (810)
T ss_dssp HHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 99988864332222 34567778887777777777777777777654443
No 30
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.32 E-value=2.5e-09 Score=132.03 Aligned_cols=441 Identities=13% Similarity=0.127 Sum_probs=287.7
Q ss_pred hHHHhHhccCCCcchHHHHHHHHHHhcCCC-CcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---------------
Q 002971 11 FTDVVNCMQTENLELKKLVYLYLINYAKSQ-PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--------------- 74 (862)
Q Consensus 11 f~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~-~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~--------------- 74 (862)
+.+++..+.++|...|+-+--++..+...+ ++......+.+.. .+.++.+|.+|.-.+.+.-
T Consensus 3 l~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~--~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w 80 (876)
T 1qgr_A 3 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN--PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (876)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhC--CCCCHHHHHHHHHHHHHhccccchHhHHHHHhhh
Confidence 345666677889999999999998876543 4443334444432 2357899988888776521
Q ss_pred ---hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhc-c-ccccccchHHHHHHhhcCC--ChhHHHHHHHHHHHH
Q 002971 75 ---VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN-A-ELVEDRGFLESLKDLISDN--NPMVVANAVAALAEI 147 (862)
Q Consensus 75 ---~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~-p-~~~~~~~~~~~l~~lL~d~--d~~V~~~a~~~l~~i 147 (862)
.++....+-..+.+++.+.++.+ ++++.++..+.+.. | +..+ ++++.+..++.+. ++.+...++.++..+
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~--~ll~~l~~~l~~~~~~~~~r~~al~~l~~l 157 (876)
T 1qgr_A 81 LAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWP--ELIPQLVANVTNPNSTEHMKESTLEAIGYI 157 (876)
T ss_dssp HTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCT--THHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccH--HHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 23344456666888888988899 99999999998864 4 3333 4788889999888 999999999999988
Q ss_pred hhcCCCC-cccccHHHHHHHHHHhccC--ChhHHHHHHHHHhhccccc------HHHHHHHHHHHHHhhcCCChHHHHHH
Q 002971 148 EENSSRP-IFEITSHTLSKLLTALNEC--TEWGQVFILDALSRYKAAD------AREAENIVERVTPRLQHANCAVVLSA 218 (862)
Q Consensus 148 ~~~~~~~-~~~l~~~~~~~Ll~~l~~~--~~w~q~~iL~~L~~~~~~~------~~~~~~il~~v~~~l~~~n~aV~~ea 218 (862)
.+.-.+. ........+..+.+.+.+. ++-.+...++.|..+...- ......+++.+...+++.+..|...+
T Consensus 158 ~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a 237 (876)
T 1qgr_A 158 CQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAA 237 (876)
T ss_dssp HHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 8653211 1223344555666666655 3445666777776543211 11122467777777777778888888
Q ss_pred HHHHHHhhhccCChHHHHHHHH-hcccchhhcc-cCChhHHHHHHHHHHHHHhhCh---------------------hhh
Q 002971 219 VKMILQQMELITSTDVVRNLCK-KMAPPLVTLL-SAEPEIQYVALRNINLIVQRRP---------------------TIL 275 (862)
Q Consensus 219 i~~i~~~~~~~~~~~~~~~~~~-~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p---------------------~~~ 275 (862)
++++..+... .++.+..... .+.+.+...+ +.++++|..++..+..++...+ ...
T Consensus 238 ~~~l~~l~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (876)
T 1qgr_A 238 LQNLVKIMSL--YYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYA 315 (876)
T ss_dssp HHHHHHHHHH--SGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHH
T ss_pred HHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHH
Confidence 8888766432 2222222222 3333333333 4567899999988877765421 111
Q ss_pred hccce-----EEEecC-------CCcHHHHHHHHHHHHHhcC---cCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHH
Q 002971 276 AHEIK-----VFFCKY-------NDPIYVKMEKLEIMIKLAS---DRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAI 340 (862)
Q Consensus 276 ~~~~~-----~~~~l~-------~d~~~Ik~~~L~lL~~l~~---~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~ 340 (862)
..++. .+..+. +++..+|+.+.+.|..++. +.-+..++..+..++.+.+...|..++.++|.++.
T Consensus 316 ~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~ 395 (876)
T 1qgr_A 316 KGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE 395 (876)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHc
Confidence 11110 011111 3346788888888777654 34466777777777888889999999999999886
Q ss_pred hhh-----HhHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCc------ccHHHHHHHHHHhhccCCchHHHHHHHHH
Q 002971 341 KLE-----RAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYP------NTYESIIATLCESLDTLDEPEAKASMIWI 409 (862)
Q Consensus 341 k~~-----~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p------~~~~~~i~~L~~~l~~~~~~~~~~~~~wi 409 (862)
... +.....+..++..+......|...+...+.++....+ .....++..+++.+.+ .+.++..++|.
T Consensus 396 ~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~--~~~v~~~a~~a 473 (876)
T 1qgr_A 396 GPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA--EPRVASNVCWA 473 (876)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS--CHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC--CHHHHHHHHHH
Confidence 543 2334556777777777777788888888888877643 3456677888877765 37778888899
Q ss_pred Hhhccccc-------------------CCHHHHHHHHhhhCCC---CCHHHHHHHHHHHHHHhhcCCCCChHHH
Q 002971 410 IGEYAERI-------------------DNADELLESFLESFPE---EPAQVQLQLLTATVKLFLKKPTEGPQQM 461 (862)
Q Consensus 410 lGEy~~~i-------------------~~~~~~l~~~~~~~~~---e~~~v~~~iLta~~Kl~~~~~~~~~~~~ 461 (862)
++.++... +..+.++..+...+.. +...+|..++.++..+....+.+ ..+.
T Consensus 474 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~ 546 (876)
T 1qgr_A 474 FSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKD-CYPA 546 (876)
T ss_dssp HHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCST-THHH
T ss_pred HHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchh-hHHH
Confidence 88765432 2345677777765544 34678988999999998877654 4433
No 31
>1r4x_A Gamma1-COP, coatomer gamma subunit; appendage, beta sandwich, ADP-ribosylation factors, protein transport; 1.90A {Homo sapiens} SCOP: b.1.10.3 d.105.1.2
Probab=99.31 E-value=9.7e-12 Score=127.66 Aligned_cols=213 Identities=11% Similarity=0.145 Sum_probs=158.9
Q ss_pred cccCCCCCceE-EEEEEEeeCCeeEEEEEEEec-CCCCcccceeeecccccCcccCCCCCCCcCCCCCeeeEEEeeeecC
Q 002971 638 VLPASTGQGLQ-IGAELTRQDGQVFYSMLFENN-TQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQ 715 (862)
Q Consensus 638 l~~~~~~~gL~-I~~~~~~~~~~~~l~l~~~N~-s~~~it~f~~q~~~n~~gl~~~~~~~~~~l~pg~~~~~~i~i~~~~ 715 (862)
|.++.....+. |++-|. +++.+++.++|+ .++.|+++++++... .+.......++++|+||+...+++-++...
T Consensus 40 LTE~EtEYvV~~vKHiF~---~hiVlQF~i~NTL~dq~LenVsV~~~~~-d~~~~~~~ipi~~L~~~~~g~~yV~l~~~~ 115 (275)
T 1r4x_A 40 LTESETEYVIRCTKHTFT---NHMVFQFDCTNTLNDQTLENVTVQMEPT-EAYEVLXYVPARSLPYNQPGTCYTLVALPK 115 (275)
T ss_dssp CSCTTSSEEEEEEEEECS---SEEEEEEEEEECCTTEEEEEEEEEEEES-SSCEEEEEECEEEECTTCCEEEEEEEECCS
T ss_pred ccCCCCceEEEEEEEecC---CcEEEEEEeEEccCcEEEeeEEEEEEcC-CCceEEEeeeccccCCCCCccEEEEEEcCC
Confidence 34444556666 788884 699999999999 889999999998753 344444446788999999999988887664
Q ss_pred --CCCCC-CCCcceEEEEecCCC-----CeEEEEeccccccccc------cCCCCChHHHHHHhccCCCCccceeecCCC
Q 002971 716 --NMSAG-PPSSLLQVAVKNNQQ-----PVWYFNDKISLHVLFT------EDGRMERGSFLETWRSLPDSNEVLKDLPGV 781 (862)
Q Consensus 716 --~~~~~-~~~~~l~~~~k~~~~-----~~~~~~l~~Pl~~l~~------~~~~~~~~~F~~~W~~l~~~~E~~~~~~~~ 781 (862)
..... .+.+.|.|.+|...+ +.-.|..++++..+.. .+ +-..+|.+.|.+++..+|...++...
T Consensus 116 ~~~~~~~~tf~~~LkF~vke~Dp~tGe~~deGyeDEY~lEdlel~~~D~i~p--~~~~nF~~~We~l~~~~E~~~tf~L~ 193 (275)
T 1r4x_A 116 EDPTAVACTFSCMMKFTVKDCDPTTGETDDEGYEDEYVLEDLEVTVADHIQK--VMKLNFEAAWDEVGDEFEKEETFTLS 193 (275)
T ss_dssp SSTTCCCEEEEEEEEEEEEEBCTTTCCBCSCCEEEEEECCCEEECGGGGEEE--CCCSCHHHHHHHHCSTTCEEEEEEET
T ss_pred CccccccceeEEEEEEEEEeccCCCCCcCCCCccceEEccceeechhhEEee--cccCchHHHHHhcCCccceEEEEEcc
Confidence 22222 355789999986211 0136677777655532 23 34669999999998778988888876
Q ss_pred ccCCH-HHHHHHHHhcCceeeeec--cCC--CCceEEEEEEecCCccEEEEEEeecC-CCceEEEEecCCCchHHHHHHH
Q 002971 782 VVSNV-EATLDLLAASNMFFIAKR--KNA--NQDVFYFSAKIPPGVPFLIELTTVIG-NPGVKCAIKTPNPDIASLFFEA 855 (862)
Q Consensus 782 ~~~~~-~~~~~~l~~~~~~~v~~~--~~~--~~~~~~~s~~~~~~~~~L~~l~~~~~-~~~~~ltvrs~~~~v~~~l~~~ 855 (862)
...+. +++.+.+..+|+..+.+. +.+ +..+++++|++.|+..||+|+++..+ +..++|+|||+++.++.++.++
T Consensus 194 ~~~sl~~AV~~l~~~Lgm~p~e~sd~v~~~~~~HtL~LsG~~~gg~~Vlvr~rl~~~~gv~~kl~vRs~~~~v~~~v~~~ 273 (275)
T 1r4x_A 194 TIKTLEEAVGNIVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVRSRLLLLDTVTMQVTARSLEELPVDIILAS 273 (275)
T ss_dssp TCCCHHHHHHHHHHHHTCEECTTTTSCCSSCSEEEEEEEEEETTTEEEEEEEEEEESSSEEEEEEEEESSHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHhcCCccccCCccCCCCCcceEEEEEEEEeCCcEEEEEEEEecCCceEEEEEEEcCCHHHHHHHHHh
Confidence 55666 588888999999999864 122 34478999999999889999988754 4678999999999999999876
Q ss_pred H
Q 002971 856 I 856 (862)
Q Consensus 856 i 856 (862)
+
T Consensus 274 v 274 (275)
T 1r4x_A 274 V 274 (275)
T ss_dssp C
T ss_pred h
Confidence 5
No 32
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.28 E-value=2.8e-09 Score=127.14 Aligned_cols=438 Identities=12% Similarity=0.087 Sum_probs=277.7
Q ss_pred HHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhh-----hH--HHHHHHHHhhhCC-CChHHHHHHHHHHHHHHhhccc
Q 002971 43 LAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDK-----IT--EYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAE 114 (862)
Q Consensus 43 l~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~-----~~--~~l~~~v~~~l~d-~~~yVRk~A~~~l~kl~~~~p~ 114 (862)
+..-++..|.+=|.+.++.+|..|+.+|+++...+ +. +..++.+.+.|.+ .++.+|+.|+.++..+... ++
T Consensus 11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~ 89 (644)
T 2z6h_A 11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-RE 89 (644)
T ss_dssp -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HH
T ss_pred hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hh
Confidence 33345667777778899999999999998875321 22 2567778888876 4899999999999876643 22
Q ss_pred ---cccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccc-cHHHHHHHHHHhccCChhHHHHHHHHHhhccc
Q 002971 115 ---LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI-TSHTLSKLLTALNECTEWGQVFILDALSRYKA 190 (862)
Q Consensus 115 ---~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l-~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~ 190 (862)
.+.+.+.++.|.++|.+.++.|+..|+.+|..++.........+ ....+..|++.+...++-.+...+++|..+..
T Consensus 90 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 90 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 169 (644)
T ss_dssp HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHh
Confidence 22234788999999999999999999999999987653221111 13567788888887776666666667776654
Q ss_pred ccHHHHHH-----HHHHHHHhhcCCC-hHHHHHHHHHHHHhhhccCChHHHHHHHH-hcccchhhcc-cCChhHHHHHHH
Q 002971 191 ADAREAEN-----IVERVTPRLQHAN-CAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLL-SAEPEIQYVALR 262 (862)
Q Consensus 191 ~~~~~~~~-----il~~v~~~l~~~n-~aV~~eai~~i~~~~~~~~~~~~~~~~~~-~~~~~L~~ll-s~~~~iry~aL~ 262 (862)
.+++.... .++.+...+++.+ ..++..+++++.++.. +++....+.. .+++.|+.++ +.++.++..++.
T Consensus 170 ~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~---~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~ 246 (644)
T 2z6h_A 170 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV---CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 246 (644)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT---CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHH
T ss_pred cCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc---CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 44433332 3455666776654 4566777888777632 3333232222 3456677777 457889999999
Q ss_pred HHHHHHhhChhh--hhccce-EEEecCCCcHHHHHHHHHHHHHhcCcC--cHHH-----HHHHHHHhhhhc-c-HHHHHH
Q 002971 263 NINLIVQRRPTI--LAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASDR--NIDQ-----VLLEFKEYATEV-D-VDFVRK 330 (862)
Q Consensus 263 ~l~~i~~~~p~~--~~~~~~-~~~~l~~d~~~Ik~~~L~lL~~l~~~~--Nv~~-----Iv~eL~~y~~~~-d-~~~~~~ 330 (862)
.|..++...+.. ...-+. .+..+.+++..+|..+...|..|+... |... .+..|.+++.+. + .+++..
T Consensus 247 ~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~ 326 (644)
T 2z6h_A 247 TLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEP 326 (644)
T ss_dssp HHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHH
Confidence 999998755431 111122 223455778899999999999998743 3333 456677777653 3 689999
Q ss_pred HHHHHHHHHHhhhHh--------HHHHHHHHHHHHhhhc-chhHHHHHHHHHHHHHhCcccHH-----HHHHHHHHhhcc
Q 002971 331 AVRAIGRCAIKLERA--------AERCISVLLELIKIKV-NYVVQEAIIVIKDIFRRYPNTYE-----SIIATLCESLDT 396 (862)
Q Consensus 331 ~i~~I~~la~k~~~~--------~~~~v~~ll~ll~~~~-~~v~~e~i~~l~~i~~~~p~~~~-----~~i~~L~~~l~~ 396 (862)
++.+++.++...+.+ ....+..++++|.... ..+..+++..+.++... ++.+. .++..|++.+.+
T Consensus 327 a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~-~~~~~~i~~~~~i~~Lv~lL~~ 405 (644)
T 2z6h_A 327 AICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVR 405 (644)
T ss_dssp HHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC-HHHHHHHHHcCCHHHHHHHHhc
Confidence 999999997532211 1135788888888765 36788888888888654 33322 245556665542
Q ss_pred CCchHHHHHHHHHHhh--ccccc--------------------CCH-----HHHHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 002971 397 LDEPEAKASMIWIIGE--YAERI--------------------DNA-----DELLESFLESFPEEPAQVQLQLLTATVKL 449 (862)
Q Consensus 397 ~~~~~~~~~~~wilGE--y~~~i--------------------~~~-----~~~l~~~~~~~~~e~~~v~~~iLta~~Kl 449 (862)
.+++.+..++|.++. +.+-. .+. ...+..+++-+.+.++.++...+.++.++
T Consensus 406 -~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l 484 (644)
T 2z6h_A 406 -AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 484 (644)
T ss_dssp -HHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred -cchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 123333344455443 21100 000 01234455556677888999999888888
Q ss_pred hhcCCCCChHHH------HHHHHHhcccCCCChHHHHHHHHHHHHhcC
Q 002971 450 FLKKPTEGPQQM------IQVVLNNATVETDNPDLRDRAYIYWRLLST 491 (862)
Q Consensus 450 ~~~~~~~~~~~~------i~~~l~~~~~~s~~~dvrdRA~~y~~ll~~ 491 (862)
... ++ .... +..+.+. . .+.|++||..|..-+.-+..
T Consensus 485 ~~~-~~--~~~~i~~~g~l~~L~~l-l-~~~~~~vr~~A~~aL~~l~~ 527 (644)
T 2z6h_A 485 AQD-KE--AAEAIEAEGATAPLTEL-L-HSRNEGVATYAAAVLFRMSE 527 (644)
T ss_dssp HTS-HH--HHHHHHHTTCHHHHHHH-T-TCSCHHHHHHHHHHHHHHTT
T ss_pred HcC-HH--HHHHHHHcCChhHHHHH-H-cCCCHHHHHHHHHHHHHHhc
Confidence 743 21 2222 2334443 2 46799999999888766654
No 33
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.28 E-value=1e-10 Score=133.09 Aligned_cols=246 Identities=13% Similarity=0.163 Sum_probs=160.1
Q ss_pred HHHhhcCCCCHHHHhHHHHHhcCCCh---hhhHHHHHHHHHhhhCC--CChHHHHHHHHHHHHHHhhcc-----------
Q 002971 50 TFVKDSQDPNPLIRALAVRTMGCIRV---DKITEYLCDPLQRCLKD--DDPYVRKTAAICVAKLYDINA----------- 113 (862)
Q Consensus 50 tl~kDl~~~n~~ir~lALr~l~~i~~---~~~~~~l~~~v~~~l~d--~~~yVRk~A~~~l~kl~~~~p----------- 113 (862)
.+...+.++|+.+|..|-..|..+.. ++....+. ..+.+ .++.||..|+..+-++.+.+.
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~----~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~ 80 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELS----RVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHH----HHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhh
Confidence 44556778999999999998887654 44444433 33434 478999999999988864320
Q ss_pred ccccc---cchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCC-CcccccHHHHHHHHHHhccC--ChhHHHHHHHHHhh
Q 002971 114 ELVED---RGFLESLKDLISDNNPMVVANAVAALAEIEENSSR-PIFEITSHTLSKLLTALNEC--TEWGQVFILDALSR 187 (862)
Q Consensus 114 ~~~~~---~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~-~~~~l~~~~~~~Ll~~l~~~--~~w~q~~iL~~L~~ 187 (862)
..+.+ ..+.+.|..+|.+.++.| ..+..++.+|...... ..| +..+..|+..+.+. ++-.+...+.+|..
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w---~~ll~~L~~~l~~~~~~~~~r~~al~~l~~ 156 (462)
T 1ibr_B 81 LAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQW---PELIPQLVANVTNPNSTEHMKESTLEAIGY 156 (462)
T ss_dssp HTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCC---TTHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccccc---HHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 01111 124455667788888888 8888888888776422 233 34567777777666 55555556666665
Q ss_pred ccccc-----HHHHHHHHHHHHHhhcCC--ChHHHHHHHHHHHHhhhccCC---hHHHHHHHHhcccchhhcc-cCChhH
Q 002971 188 YKAAD-----AREAENIVERVTPRLQHA--NCAVVLSAVKMILQQMELITS---TDVVRNLCKKMAPPLVTLL-SAEPEI 256 (862)
Q Consensus 188 ~~~~~-----~~~~~~il~~v~~~l~~~--n~aV~~eai~~i~~~~~~~~~---~~~~~~~~~~~~~~L~~ll-s~~~~i 256 (862)
+...- ......++..+...+++. ++.|..+|++++..+...+.+ ...... .+.+.+..++ +.++++
T Consensus 157 l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~---~l~~~l~~~~~~~~~~v 233 (462)
T 1ibr_B 157 ICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERH---FIMQVVCEATQCPDTRV 233 (462)
T ss_dssp HHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHH---HHHHHHHHHTTCSSHHH
T ss_pred HHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHH---HHHHHHHHhcCCCCHHH
Confidence 43211 122345777778888887 789999999999876543221 111111 1233344445 467889
Q ss_pred HHHHHHHHHHHHhhChhhhhccce-EE-----EecCCCcHHHHHHHHHHHHHhcCc
Q 002971 257 QYVALRNINLIVQRRPTILAHEIK-VF-----FCKYNDPIYVKMEKLEIMIKLASD 306 (862)
Q Consensus 257 ry~aL~~l~~i~~~~p~~~~~~~~-~~-----~~l~~d~~~Ik~~~L~lL~~l~~~ 306 (862)
|-.+++.+..++..+|..+.+|+. .+ .+..+++..+|..+++.+..++..
T Consensus 234 r~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 289 (462)
T 1ibr_B 234 RVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (462)
T ss_dssp HHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 999999999999999987776654 21 234466788899999988887654
No 34
>1pzd_A Coatomer gamma subunit; platform domain, appendage domain, EAR domain, endocytosis/exocytosis complex; 2.31A {Bos taurus} SCOP: b.1.10.3 d.105.1.2
Probab=99.27 E-value=1.7e-11 Score=129.46 Aligned_cols=213 Identities=11% Similarity=0.151 Sum_probs=160.1
Q ss_pred cccCCCCCceE-EEEEEEeeCCeeEEEEEEEec-CCCCcccceeeecccccCcccCCCCCCCcCCCCCeeeEEEeeeecC
Q 002971 638 VLPASTGQGLQ-IGAELTRQDGQVFYSMLFENN-TQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQ 715 (862)
Q Consensus 638 l~~~~~~~gL~-I~~~~~~~~~~~~l~l~~~N~-s~~~it~f~~q~~~n~~gl~~~~~~~~~~l~pg~~~~~~i~i~~~~ 715 (862)
|.++.....+. |++-|. +|+.+++.++|+ .++.|+++++++.... ++......++++|+||+...+++-++...
T Consensus 87 LTE~EtEYvV~~vKHiF~---~hiVlQF~~~NTL~dq~LenV~V~~~~~~-~~~~~~~ip~~~L~~~~~g~~yv~~~~~~ 162 (322)
T 1pzd_A 87 LTESETEYVIRCTKHTFT---DHMVFQFDCTNTLNDQTLENVTVQMEPSE-AYEVLCYVPARSLPYNQPGTCYTLVALPK 162 (322)
T ss_dssp CSCTTSSEEEEEEEEECS---SEEEEEEEEEECCTTEEEEEEEEEEEESS-SCEEEEEECEEEECBTCCEEEEEEEECCS
T ss_pred ccCCCceeEEEEEEEecc---CcEEEEEEEEEccCceEEeeEEEEEecCC-CceEEEEEEHhHCCCCCCeeEEEEEEecC
Confidence 34445556666 888884 699999999999 8899999999988633 46665556788999999999988887663
Q ss_pred C--CCCC-CCCcceEEEEecCCC-----CeEEEEeccccccccc------cCCCCChHHHHHHhccCCCCccceeecCCC
Q 002971 716 N--MSAG-PPSSLLQVAVKNNQQ-----PVWYFNDKISLHVLFT------EDGRMERGSFLETWRSLPDSNEVLKDLPGV 781 (862)
Q Consensus 716 ~--~~~~-~~~~~l~~~~k~~~~-----~~~~~~l~~Pl~~l~~------~~~~~~~~~F~~~W~~l~~~~E~~~~~~~~ 781 (862)
. .... .+.+.|.|.+|...+ +.-.|..++++..+.. .+ +-..+|.+.|.+++..+|...++...
T Consensus 163 ~~~~~~~~~f~~~LkF~vke~Dp~TGe~~deGyeDEY~lEdlel~~~D~i~p--~~~~nF~~~We~l~~~~E~~~tf~L~ 240 (322)
T 1pzd_A 163 EDPTAVACTFSCVMKFTVKDCDPTTGEADDEGYEDEYVLEDLEVTIADHIQK--VMKLNFEAAWDEVGDEFQKEETFTLS 240 (322)
T ss_dssp SCTTCCCEEEEEEEEEEEEEBCTTTCCBCSCCEEEEEECCCEEECGGGGEEE--CCCSCHHHHHHHHCSTTCEEEEEEES
T ss_pred CCCCccceEEEEEEEEEEEeecCCCCCcCCCCccceEEccceeechhhEeee--cccCchHHHHHhcCCccceEEEEEcc
Confidence 2 2222 356789999985211 0126677777655532 23 44679999999998778888888876
Q ss_pred ccCCH-HHHHHHHHhcCceeeeec--cCC--CCceEEEEEEecCCccEEEEEEeecC-CCceEEEEecCCCchHHHHHHH
Q 002971 782 VVSNV-EATLDLLAASNMFFIAKR--KNA--NQDVFYFSAKIPPGVPFLIELTTVIG-NPGVKCAIKTPNPDIASLFFEA 855 (862)
Q Consensus 782 ~~~~~-~~~~~~l~~~~~~~v~~~--~~~--~~~~~~~s~~~~~~~~~L~~l~~~~~-~~~~~ltvrs~~~~v~~~l~~~ 855 (862)
...+. +++.+.+..+|+..+.+. +.+ +..+++++|++.|+..||+|+++..+ +..++|+|||+++.++.+|.++
T Consensus 241 ~~~sL~~AV~~l~~~Lgm~p~e~sd~v~~~~~sHtL~LsG~~~gg~~VLvr~rl~~~~gv~~kl~vRS~~~~v~~~v~~~ 320 (322)
T 1pzd_A 241 TIKTLEEAVGNIVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVRSRLLLLDTVTMQVTARSSEELPVDIVLAS 320 (322)
T ss_dssp SCCCHHHHHHHHHHHHTCEECTTTTCCCSSCSEEEEEEEEEETTSCEEEEEEEEEESSSEEEEEEEEESSHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHhcCCccccCCCcCCCCCcceEEEEEEEEeCCcEEEEEEEEeeCCceEEEEEEecCCHHHHHHHHHh
Confidence 55666 688888999999999853 222 34578999999999899999988744 5678999999999999999876
Q ss_pred H
Q 002971 856 I 856 (862)
Q Consensus 856 i 856 (862)
+
T Consensus 321 v 321 (322)
T 1pzd_A 321 V 321 (322)
T ss_dssp C
T ss_pred h
Confidence 4
No 35
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.25 E-value=1.3e-08 Score=118.25 Aligned_cols=339 Identities=16% Similarity=0.140 Sum_probs=232.2
Q ss_pred ccchHHHhHhccCCCcchHHHHHHHHHHhcC--CCCcHHHH----HHHHHHhhcC-CCCHHHHhHHHHHhcCCC--hhhh
Q 002971 8 SSLFTDVVNCMQTENLELKKLVYLYLINYAK--SQPDLAIL----AVNTFVKDSQ-DPNPLIRALAVRTMGCIR--VDKI 78 (862)
Q Consensus 8 s~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~--~~~el~~L----~intl~kDl~-~~n~~ir~lALr~l~~i~--~~~~ 78 (862)
.....++++.+.|+|.+.+.-+.-++..+.. .+|-.-.+ ++..|.+-|. +.++.++..|.++|++|. +++-
T Consensus 75 ~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~ 154 (529)
T 3tpo_A 75 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 154 (529)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 4457889999999999988888777776543 33322111 3556777774 567899988888888874 3333
Q ss_pred HH-----HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccc---cccccchHHHHHHhhcCCCh-----hHHHHHHHHHH
Q 002971 79 TE-----YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNP-----MVVANAVAALA 145 (862)
Q Consensus 79 ~~-----~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~---~~~~~~~~~~l~~lL~d~d~-----~V~~~a~~~l~ 145 (862)
.. -.++.+.+++.++++.||..|+.|+..|...+|+ .+...+.++.|..+|.+.+. .++.+++.++.
T Consensus 155 ~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~ 234 (529)
T 3tpo_A 155 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS 234 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHH
Confidence 32 2468899999999999999999999999877665 34345778899999986543 45677888888
Q ss_pred HHhhcC-CCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHH-----HHHHHHHhhcCCChHHHHHHH
Q 002971 146 EIEENS-SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-----IVERVTPRLQHANCAVVLSAV 219 (862)
Q Consensus 146 ~i~~~~-~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~-----il~~v~~~l~~~n~aV~~eai 219 (862)
.++.+. +...+....+.+..|.+.+...++..+...+..|..+...+.+.... ++..+..++.+.+..|...|+
T Consensus 235 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~ 314 (529)
T 3tpo_A 235 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 314 (529)
T ss_dssp HHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred HHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHH
Confidence 887654 22234444566777888888888888888888887766544433322 356678889999999999999
Q ss_pred HHHHHhhhccCChHHHHHH-HHhcccchhhcc-cCChhHHHHHHHHHHHHHhhChhhhhccceEEEecCCCcHHHHHHHH
Q 002971 220 KMILQQMELITSTDVVRNL-CKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKL 297 (862)
Q Consensus 220 ~~i~~~~~~~~~~~~~~~~-~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L 297 (862)
+++.++.. .++.....+ -..+.++|..+| +.++++|.-+..+|..|+...+....
T Consensus 315 ~aL~nl~~--~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~--------------------- 371 (529)
T 3tpo_A 315 RAIGNIVT--GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ--------------------- 371 (529)
T ss_dssp HHHHHHTT--SCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHH---------------------
T ss_pred HHHHHHHc--cchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHH---------------------
Confidence 99988742 233332222 234667788888 46788999999999988865443211
Q ss_pred HHHHHhcCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhHhH------HHHHHHHHHHHhhhcchhHHHHHHH
Q 002971 298 EIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAA------ERCISVLLELIKIKVNYVVQEAIIV 371 (862)
Q Consensus 298 ~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~------~~~v~~ll~ll~~~~~~v~~e~i~~ 371 (862)
.+ .+ . .++.-|...+.+.+.+++++++.+|+.++....... .-++..|+++|......+..-++..
T Consensus 372 -~v---~~-~---g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~a 443 (529)
T 3tpo_A 372 -QV---VN-H---GLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 443 (529)
T ss_dssp -HH---HH-T---THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred -HH---Hh-c---CcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHH
Confidence 01 11 1 245556666777888899999999998876432211 1236667777777666665555555
Q ss_pred HHHHHH
Q 002971 372 IKDIFR 377 (862)
Q Consensus 372 l~~i~~ 377 (862)
+.+|++
T Consensus 444 L~nil~ 449 (529)
T 3tpo_A 444 ISNIFQ 449 (529)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555553
No 36
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.22 E-value=1.4e-10 Score=123.21 Aligned_cols=251 Identities=16% Similarity=0.101 Sum_probs=158.9
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHH
Q 002971 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (862)
Q Consensus 47 ~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~ 126 (862)
.++.+.+.|.|+|+.+|..|++.|+.++.++.+ +.+.+++.|+++.||..|+.++.++.. .++.+. .+++.+.
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~~~~~----~~L~~~l~d~~~~vR~~A~~aL~~l~~-~~~~~~--~l~~~L~ 96 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGGQDAV----RLAIEFCSDKNYIRRDIGAFILGQIKI-CKKCED--NVFNILN 96 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCCHHHH----HHHHHHHTCSSHHHHHHHHHHHHHSCC-CTTTHH--HHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCCchHH----HHHHHHHcCCCHHHHHHHHHHHHHhcc-ccccch--HHHHHHH
Confidence 577889999999999999999999999976554 456788899999999999999988753 222232 2455665
Q ss_pred -HhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHH
Q 002971 127 -DLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTP 205 (862)
Q Consensus 127 -~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~ 205 (862)
.+++|.|+.|..+|+.+|..+....+. ... .+++.+..
T Consensus 97 ~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~-------------------------------------~~~~~L~~ 135 (280)
T 1oyz_A 97 NMALNDKSACVRATAIESTAQRCKKNPI----YSP-------------------------------------KIVEQSQI 135 (280)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHH-------------------------------------HHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhccCCc----ccH-------------------------------------HHHHHHHH
Confidence 357899999999999999888654310 001 22344444
Q ss_pred hhcCCChHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhChhhhhccceEEEe
Q 002971 206 RLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFC 284 (862)
Q Consensus 206 ~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~~~~~~~~~~~~ 284 (862)
.+++.++.|...|+.++..+ .++. ..+.|..++ +.++.+|+.++..|..+....+..+..- +..
T Consensus 136 ~l~d~~~~vR~~a~~aL~~~----~~~~--------~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L---~~~ 200 (280)
T 1oyz_A 136 TAFDKSTNVRRATAFAISVI----NDKA--------TIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCF---VEM 200 (280)
T ss_dssp HTTCSCHHHHHHHHHHHHTC-------C--------CHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHH---HHH
T ss_pred HhhCCCHHHHHHHHHHHHhc----CCHH--------HHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHH---HHH
Confidence 55666666666666665543 1221 233344444 3456677777777766643333332211 113
Q ss_pred cCCCcHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhc-ch
Q 002971 285 KYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKV-NY 363 (862)
Q Consensus 285 l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~-~~ 363 (862)
+.+++..+|..++..|..+.++..+..++..| .+ .+++..++.+++.++.. .++..|.+++.... +.
T Consensus 201 l~d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l----~d--~~vr~~a~~aL~~i~~~------~~~~~L~~~l~~~~~~~ 268 (280)
T 1oyz_A 201 LQDKNEEVRIEAIIGLSYRKDKRVLSVLCDEL----KK--NTVYDDIIEAAGELGDK------TLLPVLDTMLYKFDDNE 268 (280)
T ss_dssp TTCSCHHHHHHHHHHHHHTTCGGGHHHHHHHH----TS--SSCCHHHHHHHHHHCCG------GGHHHHHHHHTTSSCCH
T ss_pred hcCCCHHHHHHHHHHHHHhCCHhhHHHHHHHh----cC--ccHHHHHHHHHHhcCch------hhhHHHHHHHhcCCCcH
Confidence 34666778888888888888766655555544 33 23777788888877642 44666777775432 33
Q ss_pred hHHHHHHHH
Q 002971 364 VVQEAIIVI 372 (862)
Q Consensus 364 v~~e~i~~l 372 (862)
+..+++.++
T Consensus 269 ~~~~~~~~l 277 (280)
T 1oyz_A 269 IITSAIDKL 277 (280)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444444443
No 37
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.20 E-value=4.4e-09 Score=122.04 Aligned_cols=434 Identities=12% Similarity=0.048 Sum_probs=271.8
Q ss_pred chHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHH-H----HHHHHHHhhcC-CCCHHHHhHHHHHhcCCCh-hhhHH--
Q 002971 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLA-I----LAVNTFVKDSQ-DPNPLIRALAVRTMGCIRV-DKITE-- 80 (862)
Q Consensus 10 lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~-~----L~intl~kDl~-~~n~~ir~lALr~l~~i~~-~~~~~-- 80 (862)
..+..++++.+++...+.-+-.++..++...+... + -++..+.+-|. ++++.+|..|+++|.++.. ++..+
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i 97 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 97 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHH
Confidence 46777889999999999999999988887654311 1 13555566564 3588999999998888763 22222
Q ss_pred ---HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccc---ccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCC
Q 002971 81 ---YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP 154 (862)
Q Consensus 81 ---~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~ 154 (862)
..++.+.+++.+.++-||+.|+.++.++...+++. +.+.+.++.|.++|.+.++.+...+..+|..++..++..
T Consensus 98 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~ 177 (529)
T 1jdh_A 98 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHH
Confidence 35788999999999999999999999998876543 324578999999999999999988888888776532111
Q ss_pred cccc-cHHHHHHHHHHhccCCh-hHHHHHHHHHhhccc--ccHHHH--HHHHHHHHHhhcCCChHHHHHHHHHHHHhhhc
Q 002971 155 IFEI-TSHTLSKLLTALNECTE-WGQVFILDALSRYKA--ADAREA--ENIVERVTPRLQHANCAVVLSAVKMILQQMEL 228 (862)
Q Consensus 155 ~~~l-~~~~~~~Ll~~l~~~~~-w~q~~iL~~L~~~~~--~~~~~~--~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~ 228 (862)
...+ ....+..|+..+.+.++ ..+....++|..+.. ...... ...++.+...+++.+..++..++.++.++...
T Consensus 178 ~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 257 (529)
T 1jdh_A 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 257 (529)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcC
Confidence 1111 11235566666655443 233333444443332 111111 13466777888888899999999998887542
Q ss_pred cCChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhChhh---h-hcc-ce-EEEecC--CCcHHHHHHHHHH
Q 002971 229 ITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTI---L-AHE-IK-VFFCKY--NDPIYVKMEKLEI 299 (862)
Q Consensus 229 ~~~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~~---~-~~~-~~-~~~~l~--~d~~~Ik~~~L~l 299 (862)
.+...... .+.+.|+.++ +.++++|..+...|..++...++. + ... +. .+..+. +++..++..++..
T Consensus 258 ~~~~~~~~----~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~ 333 (529)
T 1jdh_A 258 ATKQEGME----GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 333 (529)
T ss_dssp CTTCSCCH----HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChhhHHHH----hHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHH
Confidence 21111111 3456677777 468899999999999998765421 1 111 11 112222 3447899999999
Q ss_pred HHHhcCcC--c---HHH-----HHHHHHHhhhhcc-HHHHHHHHHHHHHHHHhhhHhH----HHHHHHHHHHHhhhcchh
Q 002971 300 MIKLASDR--N---IDQ-----VLLEFKEYATEVD-VDFVRKAVRAIGRCAIKLERAA----ERCISVLLELIKIKVNYV 364 (862)
Q Consensus 300 L~~l~~~~--N---v~~-----Iv~eL~~y~~~~d-~~~~~~~i~~I~~la~k~~~~~----~~~v~~ll~ll~~~~~~v 364 (862)
|..++... + ... .++.|...+.+.+ .++++.++.+++.++..-.... ...+..+++++......+
T Consensus 334 L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v 413 (529)
T 1jdh_A 334 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDT 413 (529)
T ss_dssp HHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHH
Confidence 99998642 1 112 3455666776655 5899999999999885322111 124677888887654333
Q ss_pred HHH----------------------HHHHHHHHHHhCcccHHH-----HHHHHHHhhccCCchHHHHHHHHHHhhccccc
Q 002971 365 VQE----------------------AIIVIKDIFRRYPNTYES-----IIATLCESLDTLDEPEAKASMIWIIGEYAERI 417 (862)
Q Consensus 365 ~~e----------------------~i~~l~~i~~~~p~~~~~-----~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i 417 (862)
..+ ++..+..+.. +++.+.. ++..|++.+.+ ..++++..++|.+++.+..-
T Consensus 414 ~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~-~~~~~~~l~~~~~v~~l~~ll~~-~~~~v~~~a~~~l~~l~~~~ 491 (529)
T 1jdh_A 414 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYS-PIENIQRVAAGVLCELAQDK 491 (529)
T ss_dssp C-----------CBTTBCHHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSH
T ss_pred HHHHhcccCchhhhccccHHHHHHHHHHHHHHHhc-CchHHHHHhccCCccHHHHHHcC-CchHHHHHHHHHHHHHhcCH
Confidence 332 2333444432 3332222 34567776764 35778888899999876431
Q ss_pred CCHH-----HHHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 002971 418 DNAD-----ELLESFLESFPEEPAQVQLQLLTATVKL 449 (862)
Q Consensus 418 ~~~~-----~~l~~~~~~~~~e~~~v~~~iLta~~Kl 449 (862)
.... ..++.+.+-..+.++.|+.....++.++
T Consensus 492 ~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 492 EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 1110 1123333334467788888888777665
No 38
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.19 E-value=6.8e-09 Score=122.70 Aligned_cols=372 Identities=13% Similarity=0.151 Sum_probs=246.0
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC--hhhhHHHHHHHHHhhhCCCChHHHHHHH
Q 002971 25 LKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQRCLKDDDPYVRKTAA 102 (862)
Q Consensus 25 ~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~--~~~~~~~l~~~v~~~l~d~~~yVRk~A~ 102 (862)
++|+.|+.+. .+.-+....-++ |-+.++|...|-++--.++.+. .+|++-.++..+++-+.|++|++|--|+
T Consensus 59 l~Kli~l~~~--G~d~s~~~~~vv----kl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lAL 132 (621)
T 2vgl_A 59 VCKLLFIFLL--GHDIDFGHMEAV----NLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLAL 132 (621)
T ss_dssp HHHHHHHHHH--SCCCCSCHHHHH----HGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHc--CCCCchhHHHHH----HHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 7788888664 434444444344 4567889988877666666654 5788888899999999999999999999
Q ss_pred HHHHHHHhhccccccccchHHHHHHhh--cCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHH
Q 002971 103 ICVAKLYDINAELVEDRGFLESLKDLI--SDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVF 180 (862)
Q Consensus 103 ~~l~kl~~~~p~~~~~~~~~~~l~~lL--~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~ 180 (862)
-++.++ ..|++++. +.+.+.++| .|.+|.|.-.|+.++..+...+|...- . ...+.++.+.|.+.++-.+..
T Consensus 133 r~L~~i--~~~e~~~~--l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~-~-~~~~~~l~~lL~d~d~~V~~~ 206 (621)
T 2vgl_A 133 HCIANV--GSREMAEA--FAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP-M-GDWTSRVVHLLNDQHLGVVTA 206 (621)
T ss_dssp HHHHHH--CCHHHHHH--HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC-C-CSCHHHHHHHTTCSCHHHHHH
T ss_pred HHhhcc--CCHHHHHH--HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC-c-hhHHHHHHHHhCCCCccHHHH
Confidence 999998 46888764 889999999 999999999999999999887654221 0 134566777778889988888
Q ss_pred HHHHHhhcccccHHHHHHHHH----HHHHhhcC--C-----------ChHHHHHHHHHHHHhhhccCChHHHHHHHHhcc
Q 002971 181 ILDALSRYKAADAREAENIVE----RVTPRLQH--A-----------NCAVVLSAVKMILQQMELITSTDVVRNLCKKMA 243 (862)
Q Consensus 181 iL~~L~~~~~~~~~~~~~il~----~v~~~l~~--~-----------n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~ 243 (862)
.+.++...++.+++....++. .+...+.. . ++-.....++++..+.. ..+++..+.+.. ..
T Consensus 207 a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~-~~d~~~~~~l~~-~L 284 (621)
T 2vgl_A 207 ATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPP-PEDPAVRGRLTE-CL 284 (621)
T ss_dssp HHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSS-CSSHHHHHHHHH-HH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCC-CCCHHHHHHHHH-HH
Confidence 888888777766553222222 22222211 1 45455555666554421 123443332211 11
Q ss_pred cchhh---------cc-cC--ChhHHHHHHHHHHHHHhhChhhhhccceEE-EecCCCcHHHHHHHHHHHHHhcCcCc--
Q 002971 244 PPLVT---------LL-SA--EPEIQYVALRNINLIVQRRPTILAHEIKVF-FCKYNDPIYVKMEKLEIMIKLASDRN-- 308 (862)
Q Consensus 244 ~~L~~---------ll-s~--~~~iry~aL~~l~~i~~~~p~~~~~~~~~~-~~l~~d~~~Ik~~~L~lL~~l~~~~N-- 308 (862)
..++. .+ ++ .+-+.|-+.+++..+. ..+++...-...+ ..+.+.+..+|..+|+.|..++....
T Consensus 285 ~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~-~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~ 363 (621)
T 2vgl_A 285 ETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD-SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSH 363 (621)
T ss_dssp HHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH
Confidence 11111 11 11 2256777777776664 2344433222211 12346678999999999999987653
Q ss_pred --HHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCcccHHH
Q 002971 309 --IDQVLLEFKEYAT-EVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYES 385 (862)
Q Consensus 309 --v~~Iv~eL~~y~~-~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~ 385 (862)
+......+...+. +.|..+++.++..+..++.. ...+..+..|.+.+...+..+..+++..|..+..++|...+.
T Consensus 364 ~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~ 441 (621)
T 2vgl_A 364 EAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR--SNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTW 441 (621)
T ss_dssp HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHH
T ss_pred HHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh--hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 2233344445556 88999999999888777643 456788889999998888888899999999999999888888
Q ss_pred HHHHHHHhhcc---CCchHHHHHHHHHHhhc
Q 002971 386 IIATLCESLDT---LDEPEAKASMIWIIGEY 413 (862)
Q Consensus 386 ~i~~L~~~l~~---~~~~~~~~~~~wilGEy 413 (862)
.+..|.+.+.. .-..++...+.-++.+.
T Consensus 442 ~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~ 472 (621)
T 2vgl_A 442 YVDTILNLIRIAGDYVSEEVWYRVIQIVINR 472 (621)
T ss_dssp HHHHHHHHHHHHGGGSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHhCC
Confidence 88888877742 11234444455566554
No 39
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.18 E-value=2e-08 Score=119.99 Aligned_cols=400 Identities=12% Similarity=0.081 Sum_probs=272.4
Q ss_pred hHHHhH-hccCCCcchHHHHHHHHHHhcCCCCcHHHH------HHHHHHhhcCCCCHHHHhHHHHHhcCCChhh-----h
Q 002971 11 FTDVVN-CMQTENLELKKLVYLYLINYAKSQPDLAIL------AVNTFVKDSQDPNPLIRALAVRTMGCIRVDK-----I 78 (862)
Q Consensus 11 f~~vv~-l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L------~intl~kDl~~~n~~ir~lALr~l~~i~~~~-----~ 78 (862)
+-+.++ .+...+...|-.+.-++..++.-.+|..-- ++..|.+=+.|+++.++..|+..++.+.... +
T Consensus 248 ~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I 327 (810)
T 3now_A 248 IDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKAL 327 (810)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTT
T ss_pred HHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 334443 466788888888899999999888875443 3466778888999999999998888876432 2
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhh---ccc--cccc---cchHHHHHHhhcCC--ChhHHHHHHHHHHHHh
Q 002971 79 TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI---NAE--LVED---RGFLESLKDLISDN--NPMVVANAVAALAEIE 148 (862)
Q Consensus 79 ~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~---~p~--~~~~---~~~~~~l~~lL~d~--d~~V~~~a~~~l~~i~ 148 (862)
.+.-++.+.+++.+.++.+|..|+.++.|+-.. +|. .+.+ ..+++.+.++|.+. |+.+..+|+-+|.++.
T Consensus 328 ~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS 407 (810)
T 3now_A 328 CEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLT 407 (810)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHT
T ss_pred HHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 233358899999999999999999999999642 222 2221 23577888999876 8999999999999997
Q ss_pred hcCCC-CcccccHHHHHHHHHHhccCChhHHHHHHHHHhhccccc---------------------------HH-HH---
Q 002971 149 ENSSR-PIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAAD---------------------------AR-EA--- 196 (862)
Q Consensus 149 ~~~~~-~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~---------------------------~~-~~--- 196 (862)
..... ..+......++.|+..+...++=.|...+..|..+.... .. ..
T Consensus 408 ~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r 487 (810)
T 3now_A 408 LDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKR 487 (810)
T ss_dssp TSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHH
T ss_pred CCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHH
Confidence 54211 112333567888888887767777777777777655321 00 11
Q ss_pred -HH-----HHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHH-Hhcccchhhcc-cCChhHHHHHHHHHHHHH
Q 002971 197 -EN-----IVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC-KKMAPPLVTLL-SAEPEIQYVALRNINLIV 268 (862)
Q Consensus 197 -~~-----il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~-~~~~~~L~~ll-s~~~~iry~aL~~l~~i~ 268 (862)
.. .+..+..++++.++.|.-+|+.++.++. .+++....+. ..++++|+.+| +.++..|..|.++|..|+
T Consensus 488 ~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA---~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~ 564 (810)
T 3now_A 488 ITVLANEGITTALCALAKTESHNSQELIARVLNAVC---GLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIG 564 (810)
T ss_dssp HHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHH---TSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc---CCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHh
Confidence 11 2445667889999999999999999884 3444333332 24678889988 567889999999999988
Q ss_pred hh-Chhh-hhc-----cce-EEEecCCC-cHHHHHHHHHHHHHhcCc--CcHHHHH-----HHHHHhhhhccHHHHHHHH
Q 002971 269 QR-RPTI-LAH-----EIK-VFFCKYND-PIYVKMEKLEIMIKLASD--RNIDQVL-----LEFKEYATEVDVDFVRKAV 332 (862)
Q Consensus 269 ~~-~p~~-~~~-----~~~-~~~~l~~d-~~~Ik~~~L~lL~~l~~~--~Nv~~Iv-----~eL~~y~~~~d~~~~~~~i 332 (862)
.. +|.. |.. -+. .+..+.++ +...+..++..|..|+.. ++...|+ +.|.+++.+.+..+++.+.
T Consensus 565 ~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~ 644 (810)
T 3now_A 565 ITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAA 644 (810)
T ss_dssp HHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHH
T ss_pred cCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHH
Confidence 64 4543 211 112 12234444 345567889999998864 4554444 4577777778888999999
Q ss_pred HHHHHHHHhhhHhHH------HHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCcccHHH------HHHHHHHhhccCCch
Q 002971 333 RAIGRCAIKLERAAE------RCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYES------IIATLCESLDTLDEP 400 (862)
Q Consensus 333 ~~I~~la~k~~~~~~------~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~------~i~~L~~~l~~~~~~ 400 (862)
++|+.++..- .... ..+..|+.++......+..++...+..+...+++..+. .++.|++.+.+ .++
T Consensus 645 ~~L~NLa~~~-~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s-~d~ 722 (810)
T 3now_A 645 QCLCNLVMSE-DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIAN-PSP 722 (810)
T ss_dssp HHHHHHTTSH-HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTC-SSH
T ss_pred HHHHHHhCCh-HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCC-CCH
Confidence 9999887521 1111 24567777777766667777777777777655544333 34456666653 456
Q ss_pred HHHHHHHHHHhhccc
Q 002971 401 EAKASMIWIIGEYAE 415 (862)
Q Consensus 401 ~~~~~~~wilGEy~~ 415 (862)
+.+..++|.++....
T Consensus 723 ~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 723 AVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 777888888877643
No 40
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.14 E-value=1.9e-08 Score=120.02 Aligned_cols=412 Identities=12% Similarity=0.098 Sum_probs=265.4
Q ss_pred hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccc---ccccchHHHHHHhhcC-CChhHHHHHHHHHHHHhhc
Q 002971 75 VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISD-NNPMVVANAVAALAEIEEN 150 (862)
Q Consensus 75 ~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~---~~~~~~~~~l~~lL~d-~d~~V~~~a~~~l~~i~~~ 150 (862)
..++..-.++.+.++|.+.++.||..|+.++.++....+.. +...+.++.|.++|.+ .++.+..+|+.+|..++..
T Consensus 8 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~ 87 (644)
T 2z6h_A 8 DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH 87 (644)
T ss_dssp ----CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS
T ss_pred hhhhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Confidence 34455556788889999999999999999999998765532 2223578888888875 4899999999999887654
Q ss_pred CCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHH-----HHHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 002971 151 SSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREA-----ENIVERVTPRLQHANCAVVLSAVKMILQQ 225 (862)
Q Consensus 151 ~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~-----~~il~~v~~~l~~~n~aV~~eai~~i~~~ 225 (862)
......-.....+..|++.+...++-.|...+..|..+...++... ...++.+...+++.+.-+...++.++..+
T Consensus 88 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L 167 (644)
T 2z6h_A 88 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 167 (644)
T ss_dssp HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHH
Confidence 2100000112457788888888888889888888887764432111 23567788889888887766666677665
Q ss_pred hhccCChHHHHHHH-HhcccchhhcccC--ChhHHHHHHHHHHHHHhhChh----hhhcc-ce-EEEecCCCcHHHHHHH
Q 002971 226 MELITSTDVVRNLC-KKMAPPLVTLLSA--EPEIQYVALRNINLIVQRRPT----ILAHE-IK-VFFCKYNDPIYVKMEK 296 (862)
Q Consensus 226 ~~~~~~~~~~~~~~-~~~~~~L~~lls~--~~~iry~aL~~l~~i~~~~p~----~~~~~-~~-~~~~l~~d~~~Ik~~~ 296 (862)
.. .+++....+. ...++.|+.++.+ ....++.++..|..++. ++. ++... +. .+..+.+++..+++.+
T Consensus 168 a~--~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a 244 (644)
T 2z6h_A 168 AY--GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 244 (644)
T ss_dssp HT--TCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHH
T ss_pred Hh--cCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 31 2343322221 2345667777743 34678888888877764 222 12111 11 2233456678899999
Q ss_pred HHHHHHhcCcC----cHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhHhHH-----HHHHHHHHHHhhhc--chhH
Q 002971 297 LEIMIKLASDR----NIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAE-----RCISVLLELIKIKV--NYVV 365 (862)
Q Consensus 297 L~lL~~l~~~~----Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~-----~~v~~ll~ll~~~~--~~v~ 365 (862)
+.+|..|+... .+..++..|.+.+.+.|.+++..++.+++.++..-+.... ..++.|++++...+ +.+.
T Consensus 245 ~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~ 324 (644)
T 2z6h_A 245 LWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 324 (644)
T ss_dssp HHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHH
Confidence 99999998642 3567888888888889999999999999999875332222 24788999998754 4677
Q ss_pred HHHHHHHHHHHHhCcc---cHH-----HHHHHHHHhhccCCchHHHHHHHHHHhhcccccCC--------H-HHHHHHHh
Q 002971 366 QEAIIVIKDIFRRYPN---TYE-----SIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN--------A-DELLESFL 428 (862)
Q Consensus 366 ~e~i~~l~~i~~~~p~---~~~-----~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~--------~-~~~l~~~~ 428 (862)
..++..+.++....++ .+. ..+..|.+.+.+-..+..+..++|.++..+....+ . +.+++.+-
T Consensus 325 ~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~ 404 (644)
T 2z6h_A 325 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLV 404 (644)
T ss_dssp HHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHh
Confidence 7788888888765553 122 35677777776544567788899999987643221 1 12222222
Q ss_pred hh----------------CCC--CCHHHHHHHHHHHHHHhhcCCCCChHH------HHHHHHHhcccCCCChHHHHHHHH
Q 002971 429 ES----------------FPE--EPAQVQLQLLTATVKLFLKKPTEGPQQ------MIQVVLNNATVETDNPDLRDRAYI 484 (862)
Q Consensus 429 ~~----------------~~~--e~~~v~~~iLta~~Kl~~~~~~~~~~~------~i~~~l~~~~~~s~~~dvrdRA~~ 484 (862)
.. +.. .+.+++...+.++..++.. +. .+. .+..+.+.. .+.++++|..|..
T Consensus 405 ~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~-~~--~~~~l~~~~~i~~Lv~lL--~~~~~~v~~~a~~ 479 (644)
T 2z6h_A 405 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-VH--NRIVIRGLNTIPLFVQLL--YSPIENIQRVAAG 479 (644)
T ss_dssp HHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTS-HH--HHHHHHHTTCHHHHHHHT--TCSCHHHHHHHHH
T ss_pred ccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcC-HH--HHHHHHhCCcHHHHHHHH--cCCCHHHHHHHHH
Confidence 11 111 2466777777777766532 11 111 234455543 3567899999987
Q ss_pred HHHHhcCCHH
Q 002971 485 YWRLLSTDPE 494 (862)
Q Consensus 485 y~~ll~~~~~ 494 (862)
.+.-+..+++
T Consensus 480 aL~~l~~~~~ 489 (644)
T 2z6h_A 480 VLCELAQDKE 489 (644)
T ss_dssp HHHHHHTSHH
T ss_pred HHHHHHcCHH
Confidence 6544444433
No 41
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.11 E-value=1.2e-08 Score=118.18 Aligned_cols=256 Identities=10% Similarity=0.146 Sum_probs=154.0
Q ss_pred HHHHHhhhCCCChHHHHHHHHHHHHHHhh--cc--ccccccchHHHHHHhhc-CCChhHHHHHHHHHHHHhhcCCCCccc
Q 002971 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDI--NA--ELVEDRGFLESLKDLIS-DNNPMVVANAVAALAEIEENSSRPIFE 157 (862)
Q Consensus 83 ~~~v~~~l~d~~~yVRk~A~~~l~kl~~~--~p--~~~~~~~~~~~l~~lL~-d~d~~V~~~a~~~l~~i~~~~~~~~~~ 157 (862)
++.+.+.+.+.++-++..|+.++.|+... +| +.+.+.|.++.|.++|. +.++.+...|..+|..|+..++.....
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 46678889999999999999999999864 34 23445689999999997 456899999999999998654322111
Q ss_pred -ccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHH-----HHHHHHhhcCCC-----hHHHHHHHHHHHHhh
Q 002971 158 -ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENI-----VERVTPRLQHAN-----CAVVLSAVKMILQQM 226 (862)
Q Consensus 158 -l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~i-----l~~v~~~l~~~n-----~aV~~eai~~i~~~~ 226 (862)
.....+..|+..|...++-.+...+..|..+...+++....+ +..+...+++.+ ..++..++.++.++.
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 122467888888988899999999999988876554433333 345566665543 345556666665543
Q ss_pred hcc-CChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhChhhh----hcc-ce-EEEecCCCcHHHHHHHHH
Q 002971 227 ELI-TSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTIL----AHE-IK-VFFCKYNDPIYVKMEKLE 298 (862)
Q Consensus 227 ~~~-~~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~~~----~~~-~~-~~~~l~~d~~~Ik~~~L~ 298 (862)
..- ..... .....+.+.|+.++ +.+++++.-++.+|..|+...++.. ... +. ...++.+++..++..++.
T Consensus 219 ~~~~~~~~~--~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~ 296 (510)
T 3ul1_B 219 RNKNPAPPL--DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 296 (510)
T ss_dssp CCCSSCCCH--HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred hcccchhHH--HHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHH
Confidence 210 11111 11123566777777 5678888888888888875443211 100 11 122333444555555555
Q ss_pred HHHHhcCc--CcHHHHHH-----HHHHhhhhccHHHHHHHHHHHHHHHH
Q 002971 299 IMIKLASD--RNIDQVLL-----EFKEYATEVDVDFVRKAVRAIGRCAI 340 (862)
Q Consensus 299 lL~~l~~~--~Nv~~Iv~-----eL~~y~~~~d~~~~~~~i~~I~~la~ 340 (862)
.|..++.. .+...+++ -|...+.+.+.++++.++.+++.++.
T Consensus 297 aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a 345 (510)
T 3ul1_B 297 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA 345 (510)
T ss_dssp HHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 55555432 12222221 12223334445555555555555443
No 42
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.07 E-value=5.6e-08 Score=112.98 Aligned_cols=189 Identities=12% Similarity=0.165 Sum_probs=128.0
Q ss_pred HHHHHHhhhCCCChHHHHHHHHHHHHHHhhc--c--ccccccchHHHHHHhhc-CCChhHHHHHHHHHHHHhhcCCCCc-
Q 002971 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDIN--A--ELVEDRGFLESLKDLIS-DNNPMVVANAVAALAEIEENSSRPI- 155 (862)
Q Consensus 82 l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~--p--~~~~~~~~~~~l~~lL~-d~d~~V~~~a~~~l~~i~~~~~~~~- 155 (862)
.++.+.+.+.+.++-++..|+.++.|+.... | +.+.+.+.++.|.++|. +.++.+...|+.+|..|+..+....
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4567788899999999999999999987543 3 23445689999999996 5678999999999999987643221
Q ss_pred ccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHH-----HHHHHHhhcCCC-----hHHHHHHHHHHHHh
Q 002971 156 FEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENI-----VERVTPRLQHAN-----CAVVLSAVKMILQQ 225 (862)
Q Consensus 156 ~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~i-----l~~v~~~l~~~n-----~aV~~eai~~i~~~ 225 (862)
.-+....+..|+..+...++-.+...+..|..+...+++....+ +..+...++..+ ..++..++.++..+
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 236 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 236 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Confidence 11223467788888888899899889999988876555443333 345566665433 24555566665554
Q ss_pred hhcc-CChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhCh
Q 002971 226 MELI-TSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRP 272 (862)
Q Consensus 226 ~~~~-~~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p 272 (862)
...- +.+.. .....+.+.|+.++ +.+++++.-++.+|..++...+
T Consensus 237 ~~~~~~~~~~--~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~ 283 (529)
T 3tpo_A 237 CRNKNPAPPL--DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN 283 (529)
T ss_dssp HCCCTTCCCH--HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH
T ss_pred HhcccchhhH--HHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhh
Confidence 2210 11111 11223567778888 5678899989999888876543
No 43
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.06 E-value=1e-08 Score=116.48 Aligned_cols=395 Identities=13% Similarity=0.122 Sum_probs=239.7
Q ss_pred hHHHhHhccCCCcchHHHHHHHHHHhcCC-CCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---------------
Q 002971 11 FTDVVNCMQTENLELKKLVYLYLINYAKS-QPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--------------- 74 (862)
Q Consensus 11 f~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~-~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~--------------- 74 (862)
+.+++..+.+.|-..|+-+--++..+... .|+.......-+.. .+.++.+|-+|.-.+.+..
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~--~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~ 80 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN--PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHhccccchHHHHHHHhhh
Confidence 34566777788999999999999887654 35544434444442 3457899988887766542
Q ss_pred ---hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhc-cc-cccccchHHHHHHhhcCC--ChhHHHHHHHHHHHH
Q 002971 75 ---VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN-AE-LVEDRGFLESLKDLISDN--NPMVVANAVAALAEI 147 (862)
Q Consensus 75 ---~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~-p~-~~~~~~~~~~l~~lL~d~--d~~V~~~a~~~l~~i 147 (862)
.++.-+.+-..+.+.+.+.++.| ++++.++..+.+.+ |+ ..+ ++++.|..++.+. |+.+...|+.+|..+
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~--~ll~~L~~~l~~~~~~~~~r~~al~~l~~l 157 (462)
T 1ibr_B 81 LAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWP--ELIPQLVANVTNPNSTEHMKESTLEAIGYI 157 (462)
T ss_dssp HTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCT--THHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccH--HHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 23444566677788889999999 99999999999874 53 333 4888999999888 999999999999999
Q ss_pred hhcC-CCCcccccHHHHHHHHHHhccC--ChhHHHHHHHHHhhcc---cccH---HHHHHHHHHHHHhhcCCChHHHHHH
Q 002971 148 EENS-SRPIFEITSHTLSKLLTALNEC--TEWGQVFILDALSRYK---AADA---REAENIVERVTPRLQHANCAVVLSA 218 (862)
Q Consensus 148 ~~~~-~~~~~~l~~~~~~~Ll~~l~~~--~~w~q~~iL~~L~~~~---~~~~---~~~~~il~~v~~~l~~~n~aV~~ea 218 (862)
++.. +...-......+..++..+.+. ++=.+...++.+..+. ..+. .....+++.+...+.+.+..|...+
T Consensus 158 ~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~ 237 (462)
T 1ibr_B 158 CQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAA 237 (462)
T ss_dssp HHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8764 2212223345566667777666 4556666777776532 2111 1112345666666777788888888
Q ss_pred HHHHHHhhhccCChHHHHHHHH-hcccchhhcc-cCChhHHHHHHHHHHHHHhhChhh--hhccceEEEecCCCc-----
Q 002971 219 VKMILQQMELITSTDVVRNLCK-KMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTI--LAHEIKVFFCKYNDP----- 289 (862)
Q Consensus 219 i~~i~~~~~~~~~~~~~~~~~~-~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~~--~~~~~~~~~~l~~d~----- 289 (862)
++++..+.... ++.+..... .+.+.+...+ ..++++|..++..+..++...... +.... .....+
T Consensus 238 ~~~l~~l~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 311 (462)
T 1ibr_B 238 LQNLVKIMSLY--YQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEA----AEQGRPPEHTS 311 (462)
T ss_dssp HHHHHHHHHHC--GGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCT----TCSSSCSSCCC
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccc----cccCCCccchh
Confidence 88887764321 111111111 1222233334 457789999999888877642111 00000 000000
Q ss_pred -HHHHHHHHHHHHHhcCcCcHHHHHHHHHHhhhh-------ccHHHHHHHHHHHHHHHHhhhH-hHHHHHHHHHHHHhhh
Q 002971 290 -IYVKMEKLEIMIKLASDRNIDQVLLEFKEYATE-------VDVDFVRKAVRAIGRCAIKLER-AAERCISVLLELIKIK 360 (862)
Q Consensus 290 -~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~-------~d~~~~~~~i~~I~~la~k~~~-~~~~~v~~ll~ll~~~ 360 (862)
..++ ..+..++..|.+++.+ .+...|+.+..+++.++..++. .....+..+...+...
T Consensus 312 ~~~~~-------------~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~ 378 (462)
T 1ibr_B 312 KFYAK-------------GALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP 378 (462)
T ss_dssp CCHHH-------------HHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCS
T ss_pred HHHHH-------------HHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC
Confidence 0011 0123344444444432 1234666666677766665542 2345566666666655
Q ss_pred cchhHHHHHHHHHHHHHhCc-----ccHHHHHHHHHHhhccCCchHHHHHHHHHHhhcccccC-------CHHHHHHHHh
Q 002971 361 VNYVVQEAIIVIKDIFRRYP-----NTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID-------NADELLESFL 428 (862)
Q Consensus 361 ~~~v~~e~i~~l~~i~~~~p-----~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~-------~~~~~l~~~~ 428 (862)
...+...++..+..+..... .....++..+.+.+.+ .++.++.+++|.+|.|+.... .-+.++..++
T Consensus 379 ~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d-~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll 457 (462)
T 1ibr_B 379 DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD-PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI 457 (462)
T ss_dssp SHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 55566666666666654322 1224577888888865 368899999999999987543 2456777666
Q ss_pred hh
Q 002971 429 ES 430 (862)
Q Consensus 429 ~~ 430 (862)
..
T Consensus 458 ~~ 459 (462)
T 1ibr_B 458 EG 459 (462)
T ss_dssp CC
T ss_pred HH
Confidence 54
No 44
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.03 E-value=1.6e-08 Score=107.07 Aligned_cols=193 Identities=19% Similarity=0.143 Sum_probs=146.4
Q ss_pred hHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC-hhhhHHHHHHHHH-h
Q 002971 11 FTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-VDKITEYLCDPLQ-R 88 (862)
Q Consensus 11 f~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~-~~~~~~~l~~~v~-~ 88 (862)
....++.+.+++...|..+.-.+..+.. ++ ++..+.+-+.|+++.+|..|+.+|+.++ .++..+.+++.+. .
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~--~~----~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~ 98 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRGG--QD----AVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNM 98 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC--HH----HHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC--ch----HHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 4567788899999999888888887762 22 5778888899999999999999999998 4455566666666 4
Q ss_pred hhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHH
Q 002971 89 CLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLT 168 (862)
Q Consensus 89 ~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~ 168 (862)
++.|+++.||..|+.++.++...+|...+ ..++.|..+|.|.|+.|...|+.+|..+.... .+..|+.
T Consensus 99 ~~~d~~~~vr~~a~~aL~~l~~~~~~~~~--~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~----------~~~~L~~ 166 (280)
T 1oyz_A 99 ALNDKSACVRATAIESTAQRCKKNPIYSP--KIVEQSQITAFDKSTNVRRATAFAISVINDKA----------TIPLLIN 166 (280)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHHHCGGGHH--HHHHHHHHHTTCSCHHHHHHHHHHHHTC---C----------CHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhccCCcccH--HHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHH----------HHHHHHH
Confidence 67899999999999999999877665443 37888999999999999999999998764321 2556666
Q ss_pred HhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 002971 169 ALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQ 225 (862)
Q Consensus 169 ~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~ 225 (862)
.+.+.+++.+...+..|..+...++ ..++.+...+++.++.|..+|+.++..+
T Consensus 167 ~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~L~~~l~d~~~~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 167 LLKDPNGDVRNWAAFAININKYDNS----DIRDCFVEMLQDKNEEVRIEAIIGLSYR 219 (280)
T ss_dssp HHTCSSHHHHHHHHHHHHHHTCCCH----HHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHHHHhhccCcH----HHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 6777788777777777776643332 3455666677777788888888777654
No 45
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.98 E-value=1.2e-08 Score=103.29 Aligned_cols=185 Identities=23% Similarity=0.264 Sum_probs=142.6
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHH
Q 002971 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (862)
Q Consensus 47 ~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~ 126 (862)
.+..|.+.|.|+++.+|..|++.|+.++.++.++. +.+.+.|+++.||..|+.++.++-. + ..++.|.
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~----L~~~l~~~~~~vr~~a~~aL~~~~~--~------~~~~~L~ 87 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEP----LIKALKDEDAWVRRAAADALGQIGD--E------RAVEPLI 87 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHH----HHHHTTCSCHHHHHHHHHHHHHHCC--G------GGHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHH----HHHHHcCCCHHHHHHHHHHHHhhCC--H------HHHHHHH
Confidence 46777888899999999999999999988665554 5678889999999999999998742 2 3668888
Q ss_pred HhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Q 002971 127 DLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPR 206 (862)
Q Consensus 127 ~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~ 206 (862)
.+|.|.|+.|...|+.+|..+... ..+..|+..+.+.+++.+...++.|..+... ..+..+...
T Consensus 88 ~~l~~~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~L~~~ 151 (211)
T 3ltm_A 88 KALKDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALKDEDWFVRIAAAFALGEIGDE------RAVEPLIKA 151 (211)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------GGHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH------HHHHHHHHH
Confidence 999999999999999999887432 2456777788889999999999999887543 235666777
Q ss_pred hcCCChHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhC
Q 002971 207 LQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRR 271 (862)
Q Consensus 207 l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~ 271 (862)
+++.++.|...|+.++..+ .+++.+ +.|..++ +.++.+|..+...|..+....
T Consensus 152 l~d~~~~vr~~a~~aL~~~----~~~~~~--------~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 152 LKDEDGWVRQSAADALGEI----GGERVR--------AAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp TTCSSHHHHHHHHHHHHHH----CSHHHH--------HHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred HcCCCHHHHHHHHHHHHHh----CchhHH--------HHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 8888999999999998876 344433 3344556 467889999999998877654
No 46
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.93 E-value=2.9e-08 Score=99.50 Aligned_cols=181 Identities=23% Similarity=0.293 Sum_probs=130.0
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHH
Q 002971 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (862)
Q Consensus 47 ~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~ 126 (862)
....+.+.|.|+|+.+|..|++.|+.++.++.++ .+.+.+.|+++.||..|+.++.++- +| ..++.|.
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~----~L~~~l~~~~~~vr~~a~~~L~~~~--~~------~~~~~L~ 82 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVE----PLIKALKDEDAWVRRAAADALGQIG--DE------RAVEPLI 82 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHH----HHHHHTTCSSHHHHHHHHHHHHHHC--CG------GGHHHHH
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHH----HHHHHHcCCCHHHHHHHHHHHHhhC--CH------HHHHHHH
Confidence 5667788888888888888888888888765544 4567777888888888888888763 22 3567788
Q ss_pred HhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Q 002971 127 DLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPR 206 (862)
Q Consensus 127 ~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~ 206 (862)
.+|.|.|+.|...|+.+|..+... ..+..|+..+.+.+++.+...++.|..+... ..++.+...
T Consensus 83 ~~l~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~L~~~ 146 (201)
T 3ltj_A 83 KALKDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALKDEDWFVRIAAAFALGEIGDE------RAVEPLIKA 146 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG------GGHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH------HHHHHHHHH
Confidence 888888888888888888877432 2355666777778888888888888776532 235556677
Q ss_pred hcCCChHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHH
Q 002971 207 LQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLI 267 (862)
Q Consensus 207 l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i 267 (862)
+.+.++.|...|+.++..+ .+++.+ +.|..++ +.++.+|..+...|..+
T Consensus 147 l~d~~~~vr~~A~~aL~~~----~~~~~~--------~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 147 LKDEDGWVRQSAADALGEI----GGERVR--------AAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp TTCSSHHHHHHHHHHHHHH----CSHHHH--------HHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HcCCCHHHHHHHHHHHHHh----CchhHH--------HHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 7788888888888888765 344433 2334555 45677888888877665
No 47
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.90 E-value=8.8e-08 Score=99.08 Aligned_cols=224 Identities=21% Similarity=0.178 Sum_probs=169.6
Q ss_pred HHHHHhhcCCCCHHHHhHHHHHhcCCC--hhhhHH-----HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccc---cc
Q 002971 48 VNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITE-----YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VE 117 (862)
Q Consensus 48 intl~kDl~~~n~~ir~lALr~l~~i~--~~~~~~-----~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~---~~ 117 (862)
+..|.+-|.++++.+|..|+++|+++. .++... ..++.+.+++.+.++.||..|+.++..+...+++. +.
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 566778888889999999999998874 222222 35788999999999999999999999998765543 23
Q ss_pred ccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCccc-ccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHH
Q 002971 118 DRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFE-ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREA 196 (862)
Q Consensus 118 ~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~-l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~ 196 (862)
+.+.++.+..+|.+.++.|..+|+.+|..++...+..... .....+..|++.+.+.++..+...+..|..+...++...
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 163 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 163 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 3468899999999999999999999999998643221111 112457788888888899999999999998876555433
Q ss_pred H-----HHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHH-Hhcccchhhcc-cCChhHHHHHHHHHHHHHh
Q 002971 197 E-----NIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC-KKMAPPLVTLL-SAEPEIQYVALRNINLIVQ 269 (862)
Q Consensus 197 ~-----~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~-~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~ 269 (862)
. ..++.+...+++.++.|...|+.++.++.. .+++..+.+. ....+.|+.++ +.++.+|..++..|..|..
T Consensus 164 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS--GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT--SBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc--CCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 3 246778888999999999999999998753 2444433332 23456677777 5678999999999999998
Q ss_pred hChh
Q 002971 270 RRPT 273 (862)
Q Consensus 270 ~~p~ 273 (862)
..+.
T Consensus 242 ~~~~ 245 (252)
T 4hxt_A 242 GGWL 245 (252)
T ss_dssp TCBC
T ss_pred CCCc
Confidence 7654
No 48
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.87 E-value=7.7e-08 Score=96.36 Aligned_cols=184 Identities=21% Similarity=0.292 Sum_probs=148.9
Q ss_pred ccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHH
Q 002971 8 SSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQ 87 (862)
Q Consensus 8 s~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~ 87 (862)
...+..+++++.++|...|+.+--.+..+... + ++..+.+-|.|+++.+|..|++.|+.++.++.++. +.
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~--~----~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~----L~ 82 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE--R----AVEPLIKALKDEDAWVRRAAADALGQIGDERAVEP----LI 82 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG--G----GHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHH----HH
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh--h----HHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHH----HH
Confidence 45688899999999999999998888887642 2 45667778889999999999999999998766554 56
Q ss_pred hhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHH
Q 002971 88 RCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLL 167 (862)
Q Consensus 88 ~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll 167 (862)
+++.|+++.||..|+.++.++-. | ..++.|..+|.|.|+.|...|+.+|..+... ..+..|+
T Consensus 83 ~~l~d~~~~vr~~a~~aL~~~~~--~------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~ 144 (201)
T 3ltj_A 83 KALKDEDGWVRQSAAVALGQIGD--E------RAVEPLIKALKDEDWFVRIAAAFALGEIGDE----------RAVEPLI 144 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCC--G------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG----------GGHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhCc--H------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH----------HHHHHHH
Confidence 78899999999999999998742 2 3668889999999999999999999988532 2466777
Q ss_pred HHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 002971 168 TALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQ 225 (862)
Q Consensus 168 ~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~ 225 (862)
..+.+.+++.+...++.|..+... ..++.+...+++.++.|...|+.++-.+
T Consensus 145 ~~l~d~~~~vr~~A~~aL~~~~~~------~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 145 KALKDEDGWVRQSAADALGEIGGE------RVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCSH------HHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HHHcCCCHHHHHHHHHHHHHhCch------hHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 888889999999999999888532 3355566667778888988888877654
No 49
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.86 E-value=8e-08 Score=97.04 Aligned_cols=184 Identities=22% Similarity=0.297 Sum_probs=149.1
Q ss_pred ccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHH
Q 002971 8 SSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQ 87 (862)
Q Consensus 8 s~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~ 87 (862)
...+...++++.+++...|+.+--.+..+.. ++ ++..|.+-+.|+++.+|..|+++|+.++.++.++. +.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--~~----~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~----L~ 87 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--ER----AVEPLIKALKDEDAWVRRAAADALGQIGDERAVEP----LI 87 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--GG----GHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHH----HH
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--cc----HHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHH----HH
Confidence 4567788889999999999988888887765 23 46677788889999999999999999998766554 56
Q ss_pred hhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHH
Q 002971 88 RCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLL 167 (862)
Q Consensus 88 ~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll 167 (862)
+++.|+++.||..|+.++.++-. + ..++.|.++|.|.|+.|...|+.+|..+... ..+..|+
T Consensus 88 ~~l~~~~~~vr~~a~~aL~~~~~--~------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~ 149 (211)
T 3ltm_A 88 KALKDEDGWVRQSAAVALGQIGD--E------RAVEPLIKALKDEDWFVRIAAAFALGEIGDE----------RAVEPLI 149 (211)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCC--G------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----------GGHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhCc--H------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH----------HHHHHHH
Confidence 78899999999999999998742 2 3678899999999999999999999988432 2356777
Q ss_pred HHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 002971 168 TALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQ 225 (862)
Q Consensus 168 ~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~ 225 (862)
..+.+.+++.+...++.|..+.. ...++.+...+++.++.|...|+.++..+
T Consensus 150 ~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 150 KALKDEDGWVRQSAADALGEIGG------ERVRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCS------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred HHHcCCCHHHHHHHHHHHHHhCc------hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 78889999999999999998853 23455666777788899999998888765
No 50
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.80 E-value=5.8e-08 Score=100.82 Aligned_cols=220 Identities=17% Similarity=0.157 Sum_probs=168.2
Q ss_pred CcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHH-----HHHHHHHhhcCCCCHHHHhHHHHHhcCCCh--hhh
Q 002971 6 DVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAI-----LAVNTFVKDSQDPNPLIRALAVRTMGCIRV--DKI 78 (862)
Q Consensus 6 dvs~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~-----L~intl~kDl~~~n~~ir~lALr~l~~i~~--~~~ 78 (862)
+-.+.|+..++++.++|.+.++-+--.+..++..+++... -++..|.+-|.++++.+|..|+++|+++.. ++.
T Consensus 9 ~~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (252)
T 4db8_A 9 HHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (252)
T ss_dssp CTTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 4456799999999999999999988888665543332111 145778888999999999999999999874 443
Q ss_pred HHH-----HHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccc---ccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhc
Q 002971 79 TEY-----LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (862)
Q Consensus 79 ~~~-----l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 150 (862)
.+. .++.+.+++.+.++.||+.|+.++..+....+.. +.+.+.++.|.++|.+.++.|...|+.+|..++..
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 332 5788999999999999999999999998765432 33457899999999999999999999999999865
Q ss_pred CCCCccc-ccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHH-----HHHHHHHhhcCCChHHHHHHHHHHHH
Q 002971 151 SSRPIFE-ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-----IVERVTPRLQHANCAVVLSAVKMILQ 224 (862)
Q Consensus 151 ~~~~~~~-l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~-----il~~v~~~l~~~n~aV~~eai~~i~~ 224 (862)
.+..... .....+..|++.+.+.++..+...+..|..+...+++.... .++.+...+++.++.|..+|+.++.+
T Consensus 169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4221111 11244678888888889999999999999887655544433 35567777888888888888888765
Q ss_pred h
Q 002971 225 Q 225 (862)
Q Consensus 225 ~ 225 (862)
+
T Consensus 249 l 249 (252)
T 4db8_A 249 L 249 (252)
T ss_dssp T
T ss_pred H
Confidence 4
No 51
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.79 E-value=2.6e-07 Score=95.45 Aligned_cols=217 Identities=20% Similarity=0.161 Sum_probs=171.2
Q ss_pred chHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHH-----HHHHHHhhcCCCCHHHHhHHHHHhcCCCh--hhhHH--
Q 002971 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAIL-----AVNTFVKDSQDPNPLIRALAVRTMGCIRV--DKITE-- 80 (862)
Q Consensus 10 lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L-----~intl~kDl~~~n~~ir~lALr~l~~i~~--~~~~~-- 80 (862)
..+..++++.+++.+.++-+-..+..++..+++.... ++..|.+-|.++++.+|..|+++|+++.. ++..+
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 3567888999999999999999999998887643322 57778899999999999999999999874 44333
Q ss_pred ---HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccc---ccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCC
Q 002971 81 ---YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP 154 (862)
Q Consensus 81 ---~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~ 154 (862)
..++.+.+++.+.++.||..|+.++..+...+++. +.+.+.++.|.++|.+.++.|...|+.+|..++...+..
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 35788999999999999999999999999766653 223478899999999999999999999999998654321
Q ss_pred c-ccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHH-----HHHHHHHhhcCCChHHHHHHHHHHHHhh
Q 002971 155 I-FEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-----IVERVTPRLQHANCAVVLSAVKMILQQM 226 (862)
Q Consensus 155 ~-~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~-----il~~v~~~l~~~n~aV~~eai~~i~~~~ 226 (862)
. .-.....+..|+..+.+.++..+...+..|..+...+++.... .++.+...+++.++.|..+|+.++.++.
T Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 240 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIK 240 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 1 1112346778888888889999999999999887655544433 3567778888889999999988888764
No 52
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.74 E-value=9.8e-08 Score=99.11 Aligned_cols=219 Identities=16% Similarity=0.127 Sum_probs=160.2
Q ss_pred HHHHHhhcCCCCHHHHhHHHHHhcCCCh--hhhH-----HHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccc---cc
Q 002971 48 VNTFVKDSQDPNPLIRALAVRTMGCIRV--DKIT-----EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VE 117 (862)
Q Consensus 48 intl~kDl~~~n~~ir~lALr~l~~i~~--~~~~-----~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~---~~ 117 (862)
.+.+.+.|.+.|+.+|..|+++|+++.. .+.. ...++.+.+++.+.++-||..|+.++..+...+++. +.
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5678889999999999999999866432 2222 235688999999999999999999999998765543 23
Q ss_pred ccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCC-cccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHH
Q 002971 118 DRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP-IFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREA 196 (862)
Q Consensus 118 ~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~-~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~ 196 (862)
+.+.++.|..+|.+.++.|...|+.+|..++...... ..-.....+..|++.+.+.++-.+...+..|..+...+++..
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 173 (252)
T 4db8_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 173 (252)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence 3578899999999999999999999999997654221 111122457788888888888889999999998876555443
Q ss_pred HH-----HHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHHH-hcccchhhcc-cCChhHHHHHHHHHHHHH
Q 002971 197 EN-----IVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLL-SAEPEIQYVALRNINLIV 268 (862)
Q Consensus 197 ~~-----il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~-~~~~~L~~ll-s~~~~iry~aL~~l~~i~ 268 (862)
.. .+..+...+++.++.|...|+.++.++.. .+++....+.. .+.+.|+.++ +.++++|..++..|..|+
T Consensus 174 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS--GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc--CCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 33 35677888899999999999999988742 34444333322 2455566666 456777777777776553
No 53
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.71 E-value=3.5e-07 Score=98.93 Aligned_cols=275 Identities=15% Similarity=0.113 Sum_probs=110.8
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccH
Q 002971 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (862)
Q Consensus 81 ~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~ 160 (862)
.+..+|.|++.+++..+||-..+++--+.+. |+.+-- ..+.|.+=++|+|+.+.+.|+.+|+.|.... +..
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~iL--v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~------m~~ 138 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVII--VTSSLTKDMTGKEDSYRGPAVRALCQITDST------MLQ 138 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGGG--GHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT------THH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHHH--HHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH------HHH
Confidence 4445555555555555555555555333222 222211 3344444445555555555555555553211 222
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHHH
Q 002971 161 HTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK 240 (862)
Q Consensus 161 ~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~ 240 (862)
...+.+-+.+.+.+|+..-..+=...++.+.+++..+.+++.+...+...|+.|++.|+.++..+.. .+...+..
T Consensus 139 ~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~--~d~~a~~k--- 213 (355)
T 3tjz_B 139 AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRK--NDRLAVSK--- 213 (355)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHT--TCHHHHHH---
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHh--hchHHHHH---
Confidence 2333444444455555443333333333344455555556666667777888888888777776532 13322222
Q ss_pred hcccchhhcccCChhHHHHHHHHHHHHHhhC-hhhhhccceE-EEecCCCcHHHHHHHHHHHHHhcCcCc--HHHHHHHH
Q 002971 241 KMAPPLVTLLSAEPEIQYVALRNINLIVQRR-PTILAHEIKV-FFCKYNDPIYVKMEKLEIMIKLASDRN--IDQVLLEF 316 (862)
Q Consensus 241 ~~~~~L~~lls~~~~iry~aL~~l~~i~~~~-p~~~~~~~~~-~~~l~~d~~~Ik~~~L~lL~~l~~~~N--v~~Iv~eL 316 (862)
+++.+...--.++-.+...++.+..+.... |..-.+.+.. ..++.+....|...+...+..+.+... ....+.-|
T Consensus 214 -Lv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L 292 (355)
T 3tjz_B 214 -MISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVL 292 (355)
T ss_dssp -HHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC-----------CCCTH
T ss_pred -HHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 111111110012333333444444444444 3333333332 335666677788888887777754111 11223444
Q ss_pred HHhhhhccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhcchhHHHHHH
Q 002971 317 KEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAII 370 (862)
Q Consensus 317 ~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~ 370 (862)
..++.+.|.+++-.+++.|..++.++|.....|-..+.+++++.+..+..-++.
T Consensus 293 ~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~sI~t~Ait 346 (355)
T 3tjz_B 293 QLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLAIT 346 (355)
T ss_dssp HHHHHSSSSSSHHHHHHCC-----------------------------------
T ss_pred HHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccCCcHhHHHHHHH
Confidence 556777788888888888888888888888888888888888776555444433
No 54
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.64 E-value=3.8e-07 Score=91.78 Aligned_cols=148 Identities=18% Similarity=0.170 Sum_probs=119.7
Q ss_pred CCCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHH-----HHHHHHhhcCCCCHHHHhHHHHHhcCCC--hh
Q 002971 4 GKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAIL-----AVNTFVKDSQDPNPLIRALAVRTMGCIR--VD 76 (862)
Q Consensus 4 G~dvs~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L-----~intl~kDl~~~n~~ir~lALr~l~~i~--~~ 76 (862)
|++-...++-+++++.++|...+.-+..++..++..+++.... ++..|.+-|.++++.+|..|+++|+++. .+
T Consensus 7 ~~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 86 (210)
T 4db6_A 7 HHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 86 (210)
T ss_dssp ------CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred cccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc
Confidence 5677788889999999999999999999999999777664322 4677888899999999999999999986 34
Q ss_pred hhHHH-----HHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccc---cccchHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 002971 77 KITEY-----LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELV---EDRGFLESLKDLISDNNPMVVANAVAALAEIE 148 (862)
Q Consensus 77 ~~~~~-----l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~ 148 (862)
+..+. .++.+.+++.+.++.||+.|+.++..+...+++.. .+.+.++.|.++|.+.|+.|...|+.+|..++
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 44333 46889999999999999999999999987666542 24578999999999999999999999999998
Q ss_pred hcC
Q 002971 149 ENS 151 (862)
Q Consensus 149 ~~~ 151 (862)
...
T Consensus 167 ~~~ 169 (210)
T 4db6_A 167 SGG 169 (210)
T ss_dssp TSC
T ss_pred cCC
Confidence 653
No 55
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.55 E-value=5.8e-06 Score=93.97 Aligned_cols=166 Identities=14% Similarity=0.101 Sum_probs=111.3
Q ss_pred HHHHHhhhCCCChHHHHHHHHHHHHHHhhccc---cccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccc-
Q 002971 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI- 158 (862)
Q Consensus 83 ~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l- 158 (862)
++.+.++|.+.++.+|..|+.++.++...+++ .+.+.+.++.|.++|.+.++.+...|+.+|..+...++.....+
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 46677888899999999999999998866654 34456889999999999999999999999999986532221111
Q ss_pred cHHHHHHHHHHhc-cCChhHHHHHHHHHhhccccc--HH-HHHHHHHHHHHhhc--------C--------CChHHHHHH
Q 002971 159 TSHTLSKLLTALN-ECTEWGQVFILDALSRYKAAD--AR-EAENIVERVTPRLQ--------H--------ANCAVVLSA 218 (862)
Q Consensus 159 ~~~~~~~Ll~~l~-~~~~w~q~~iL~~L~~~~~~~--~~-~~~~il~~v~~~l~--------~--------~n~aV~~ea 218 (862)
....+..|++.|. ..++-.+......|..+...+ .. -.+..+..+..++. + ....|+..|
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a 163 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA 163 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHH
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHH
Confidence 1234677777777 556767776666666554321 11 11234555556662 1 346788899
Q ss_pred HHHHHHhhhccCChHHHHHHHH--hcccchhhccc
Q 002971 219 VKMILQQMELITSTDVVRNLCK--KMAPPLVTLLS 251 (862)
Q Consensus 219 i~~i~~~~~~~~~~~~~~~~~~--~~~~~L~~lls 251 (862)
+.++.++.. +++....+.. .++++|+.++.
T Consensus 164 ~~aL~nLs~---~~~~~~~i~~~~g~i~~Lv~lL~ 195 (457)
T 1xm9_A 164 TGCLRNLSS---ADAGRQTMRNYSGLIDSLMAYVQ 195 (457)
T ss_dssp HHHHHHHTT---SHHHHHHHTTSTTHHHHHHHHHH
T ss_pred HHHHHHHcc---CHHHHHHHHHcCCCHHHHHHHHH
Confidence 999988742 4554444332 35666777774
No 56
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.50 E-value=2.1e-06 Score=88.73 Aligned_cols=198 Identities=17% Similarity=0.204 Sum_probs=143.9
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccc--cchHHHHHHhhc-CCChhHHHHHHHHHHHHhhcCCCCc
Q 002971 79 TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLIS-DNNPMVVANAVAALAEIEENSSRPI 155 (862)
Q Consensus 79 ~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~--~~~~~~l~~lL~-d~d~~V~~~a~~~l~~i~~~~~~~~ 155 (862)
...+-+.+.+.+.|+++.+|+.|+.++.++...+|+.... .++.+.|..+|. |.|+.|+..|+.++..++..-+...
T Consensus 13 ~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~ 92 (242)
T 2qk2_A 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF 92 (242)
T ss_dssp GGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred cccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhH
Confidence 3344455778889999999999999999999886654321 246788889995 9999999999999999987643333
Q ss_pred ccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChH-H
Q 002971 156 FEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTD-V 234 (862)
Q Consensus 156 ~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~-~ 234 (862)
.......+..|+..+.+.++-.+......|..+.... ....+++.+...+++.|+.|..+++.++..++... .++ .
T Consensus 93 ~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~--~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~-~~~~~ 169 (242)
T 2qk2_A 93 SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST--SLEAQQESIVESLSNKNPSVKSETALFIARALTRT-QPTAL 169 (242)
T ss_dssp HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS--CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-CGGGC
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc-CCCCc
Confidence 3344566788888888888877766666666554322 13567888899999999999999999998865432 122 1
Q ss_pred HHHHHHhcccchhhccc-CChhHHHHHHHHHHHHHhhCh-hhhhccc
Q 002971 235 VRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP-TILAHEI 279 (862)
Q Consensus 235 ~~~~~~~~~~~L~~lls-~~~~iry~aL~~l~~i~~~~p-~~~~~~~ 279 (862)
.......+.+.|..+++ +.+++|-.+..++..+...-+ +.+.+++
T Consensus 170 ~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l 216 (242)
T 2qk2_A 170 NKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLL 216 (242)
T ss_dssp CHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGG
T ss_pred cHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 12223356677777884 788999999999999987644 3455554
No 57
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.42 E-value=4.2e-06 Score=84.04 Aligned_cols=187 Identities=18% Similarity=0.142 Sum_probs=136.1
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccc---ccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcc
Q 002971 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIF 156 (862)
Q Consensus 80 ~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~ 156 (862)
+...+.+.+++.+.++.||..|+.++..+...+++. +.+.+.++.|.++|.+.|+.|...|+.+|..++..++....
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 455677899999999999999999999998766553 23347889999999999999999999999999754322111
Q ss_pred c-ccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHH-----HHHHHHHhhcCCChHHHHHHHHHHHHhhhccC
Q 002971 157 E-ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-----IVERVTPRLQHANCAVVLSAVKMILQQMELIT 230 (862)
Q Consensus 157 ~-l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~-----il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~ 230 (862)
. .....+..|++.+.+.++-.+...+..|..+...+++.... .++.+...+++.+..|...|+.++.++.. .
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~--~ 168 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS--G 168 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT--S
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc--C
Confidence 1 11234678888888889989999999998887655544332 45677888899899999999999988753 2
Q ss_pred ChHHHHHHHH-hcccchhhcc-cCChhHHHHHHHHHHHHH
Q 002971 231 STDVVRNLCK-KMAPPLVTLL-SAEPEIQYVALRNINLIV 268 (862)
Q Consensus 231 ~~~~~~~~~~-~~~~~L~~ll-s~~~~iry~aL~~l~~i~ 268 (862)
+++....+.. ..++.|+.++ +.++.+|..++..|..++
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 3443333222 3455667777 456778888888877764
No 58
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.41 E-value=0.00043 Score=86.18 Aligned_cols=407 Identities=9% Similarity=0.051 Sum_probs=218.5
Q ss_pred HHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC-------------hhhhH
Q 002971 13 DVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-------------VDKIT 79 (862)
Q Consensus 13 ~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~-------------~~~~~ 79 (862)
+++....++|-..| +--++..+ +.+|+......+-+... +.++.+|-+|.-.+-+.- .++--
T Consensus 9 ~~L~~~~spd~~~r--Ae~~L~~~-~~~p~~~~~L~~il~~~--~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k 83 (960)
T 1wa5_C 9 KFLAESVIASTAKT--SERNLRQL-ETQDGFGLTLLHVIAST--NLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNV 83 (960)
T ss_dssp HHHHHTTSGGGHHH--HHHHHHHH-HTSTTHHHHHHHHHHCT--TSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHH
T ss_pred HHHHHhcCCCHHHH--HHHHHHHh-hcCCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHH
Confidence 44444445565555 77777766 66788666666665432 346788888877666421 23344
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHHHHHHHhh-ccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccc
Q 002971 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI 158 (862)
Q Consensus 80 ~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~-~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l 158 (862)
+.+-..+..++.+.++.||++++.++.++.+. .|+.-+ ++++.|..++...|+..+..++.++.+|++..... +.
T Consensus 84 ~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp--~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~-~~- 159 (960)
T 1wa5_C 84 ELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWP--TLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPL-FR- 159 (960)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCT--THHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTS-CC-
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchh--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHh-hc-
Confidence 45555566666667799999999999999986 565444 37788888888888888889999999998753210 00
Q ss_pred cHH---HHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCCh---------HHHHHHHHHHHHhh
Q 002971 159 TSH---TLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANC---------AVVLSAVKMILQQM 226 (862)
Q Consensus 159 ~~~---~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~---------aV~~eai~~i~~~~ 226 (862)
... .+..++... .. .+++++ ..+...++..+. .++..+++++..+.
T Consensus 160 ~~~~~~~l~~~l~~~--~~-----~ll~~~---------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~ 217 (960)
T 1wa5_C 160 SDELFLEIKLVLDVF--TA-----PFLNLL---------------KTVDEQITANENNKASLNILFDVLLVLIKLYYDFN 217 (960)
T ss_dssp CHHHHHHHHHHHHHH--HH-----HHHHHH---------------HHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHH--HH-----HHHHHH---------------HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 000 011111110 00 011111 111111111100 11112233332211
Q ss_pred hccCChHHHHHHHHhcccchhhcc-------cCC---------hhHHHHHHHHHHHHHhhChhhhhccceEEE-----ec
Q 002971 227 ELITSTDVVRNLCKKMAPPLVTLL-------SAE---------PEIQYVALRNINLIVQRRPTILAHEIKVFF-----CK 285 (862)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~L~~ll-------s~~---------~~iry~aL~~l~~i~~~~p~~~~~~~~~~~-----~l 285 (862)
...-++....-.....+.+..++ ..+ ..+|--+++.+..+..++++.|.+|+..|. .+
T Consensus 218 -~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l 296 (960)
T 1wa5_C 218 -CQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLL 296 (960)
T ss_dssp -SSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred -hccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00112211110001111111222 111 135667788999999999887776643210 11
Q ss_pred -----CCCcHHHHHHHHHHHHHhcCcCc----------HHHHH-HHHHHhhh----h-----cc--------------HH
Q 002971 286 -----YNDPIYVKMEKLEIMIKLASDRN----------IDQVL-LEFKEYAT----E-----VD--------------VD 326 (862)
Q Consensus 286 -----~~d~~~Ik~~~L~lL~~l~~~~N----------v~~Iv-~eL~~y~~----~-----~d--------------~~ 326 (862)
...+..++..+++.+..++.... +..|+ .-+..++. + .| ..
T Consensus 297 ~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s 376 (960)
T 1wa5_C 297 TSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDT 376 (960)
T ss_dssp HHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----C
T ss_pred HhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccC
Confidence 13446789999999998875432 33344 22223331 1 01 12
Q ss_pred HHHHHHHHHHHHHHhhhH-hHHHHHHHHHHHHhh-----hcch-hHHHHHHHHHHHHHhC-----c--------ccHHHH
Q 002971 327 FVRKAVRAIGRCAIKLER-AAERCISVLLELIKI-----KVNY-VVQEAIIVIKDIFRRY-----P--------NTYESI 386 (862)
Q Consensus 327 ~~~~~i~~I~~la~k~~~-~~~~~v~~ll~ll~~-----~~~~-v~~e~i~~l~~i~~~~-----p--------~~~~~~ 386 (862)
.|+.+...+..++..+++ ....++..+.+.+.. ..+. ..+.++..+..+..+- + ++-...
T Consensus 377 ~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l 456 (960)
T 1wa5_C 377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF 456 (960)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHH
Confidence 455666777778877753 222333334344442 1222 2333444555554321 1 222222
Q ss_pred HHHHHHhhccC--CchHHHHHHHHHHhhcccccCC--HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhh
Q 002971 387 IATLCESLDTL--DEPEAKASMIWIIGEYAERIDN--ADELLESFLESFPEEPAQVQLQLLTATVKLFL 451 (862)
Q Consensus 387 i~~L~~~l~~~--~~~~~~~~~~wilGEy~~~i~~--~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~ 451 (862)
...+...+.+- .+|-.+.+++|++|.|++.+.. -..++..+++.+.+.+..||...-.|+..+..
T Consensus 457 ~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 457 TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 33344444442 2677899999999999987631 23556667778888889999999999998875
No 59
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.40 E-value=6.5e-05 Score=86.76 Aligned_cols=186 Identities=13% Similarity=0.060 Sum_probs=112.4
Q ss_pred HHHHHHhhhCCCChHHHHHHHHHHHHHHhhccc---cccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhc-CCCCccc
Q 002971 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN-SSRPIFE 157 (862)
Q Consensus 82 l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~-~~~~~~~ 157 (862)
-++.+.++|.+.++-++..|+.++.++...+++ .+.+.+-++.|..+|...++.|...|+.+|..|+.. +......
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~ 128 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIA 128 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHH
Confidence 466778889999999999999999998865543 244467899999999999999999999999999864 2211111
Q ss_pred -ccHHHHHHHHHHhcc-CChhHHHHHHHHHhhcccc--cHHHH-HHHHHHHHHhh-----------------c-CCChHH
Q 002971 158 -ITSHTLSKLLTALNE-CTEWGQVFILDALSRYKAA--DAREA-ENIVERVTPRL-----------------Q-HANCAV 214 (862)
Q Consensus 158 -l~~~~~~~Ll~~l~~-~~~w~q~~iL~~L~~~~~~--~~~~~-~~il~~v~~~l-----------------~-~~n~aV 214 (862)
.-...+..|+..|.. .++-.|......|..+... ..... ...+..+..++ + ..+..|
T Consensus 129 I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V 208 (584)
T 3l6x_A 129 IKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESV 208 (584)
T ss_dssp HHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHH
T ss_pred HHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHH
Confidence 122456677777765 3454555544444443321 11111 11122232222 1 124688
Q ss_pred HHHHHHHHHHhhhccCChHHHHHHHH--hcccchhhccc-------CChhHHHHHHHHHHHHHh
Q 002971 215 VLSAVKMILQQMELITSTDVVRNLCK--KMAPPLVTLLS-------AEPEIQYVALRNINLIVQ 269 (862)
Q Consensus 215 ~~eai~~i~~~~~~~~~~~~~~~~~~--~~~~~L~~lls-------~~~~iry~aL~~l~~i~~ 269 (862)
+..|+.++.++.. .+++..+.+.. -++++|+.++. .+..++--++..|..|+.
T Consensus 209 ~~nAa~~L~NLs~--~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~ 270 (584)
T 3l6x_A 209 LTNTAGCLRNVSS--ERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSY 270 (584)
T ss_dssp HHHHHHHHHHHTS--SCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc--CCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhc
Confidence 8999999988742 23343333321 23446666663 123455556666666554
No 60
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.33 E-value=4.2e-05 Score=88.36 Aligned_cols=349 Identities=11% Similarity=0.034 Sum_probs=210.0
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHHhcCCC--hhh----hHH-HHHHHHHhhhCCCChHHHHHHHHHHHHHHhh-cc---cc
Q 002971 47 AVNTFVKDSQDPNPLIRALAVRTMGCIR--VDK----ITE-YLCDPLQRCLKDDDPYVRKTAAICVAKLYDI-NA---EL 115 (862)
Q Consensus 47 ~intl~kDl~~~n~~ir~lALr~l~~i~--~~~----~~~-~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~-~p---~~ 115 (862)
.+..|.+-|.+.++.++..|..+|.++. ..+ +++ -.++.+.++|.+.++-|+..|+.|+..+... ++ ..
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~ 128 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIA 128 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHH
Confidence 3566677788999999888888887664 233 222 2468999999999999999999999999863 33 34
Q ss_pred ccccchHHHHHHhhcC-CChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhc------------------cCChh
Q 002971 116 VEDRGFLESLKDLISD-NNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALN------------------ECTEW 176 (862)
Q Consensus 116 ~~~~~~~~~l~~lL~d-~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~------------------~~~~w 176 (862)
+.+.+-++.|..+|.. .+..+..+|..+|..++... .....+....+..|++.+. ..++-
T Consensus 129 I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~ 207 (584)
T 3l6x_A 129 IKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWES 207 (584)
T ss_dssp HHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHH
T ss_pred HHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhhHHHHhccHHHHHHHHhcccccccccccccccccccccHH
Confidence 4456889999999986 68889999999999987643 2223333334455554431 01234
Q ss_pred HHHHHHHHHhhcccccHHHHHH------HHHHHHHhhcC------CChHHHHHHHHHHHHhhhcc----CCh-HHHHHHH
Q 002971 177 GQVFILDALSRYKAADAREAEN------IVERVTPRLQH------ANCAVVLSAVKMILQQMELI----TST-DVVRNLC 239 (862)
Q Consensus 177 ~q~~iL~~L~~~~~~~~~~~~~------il~~v~~~l~~------~n~aV~~eai~~i~~~~~~~----~~~-~~~~~~~ 239 (862)
.+.....+|..+...+++.... +++.+...+++ .+...+-.|+.++.++.... +.. .......
T Consensus 208 V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~ 287 (584)
T 3l6x_A 208 VLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAP 287 (584)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcc
Confidence 4555666666665444332222 23344444432 34456667777766542110 000 0000000
Q ss_pred -HhcccchhhcccCChh----HHHHHHHHHHHHHhhChhhhhccceEEEecCCCcHHHHHHHHHHHHHhcCcC-----cH
Q 002971 240 -KKMAPPLVTLLSAEPE----IQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDR-----NI 309 (862)
Q Consensus 240 -~~~~~~L~~lls~~~~----iry~aL~~l~~i~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~-----Nv 309 (862)
.+.. + ....... .+--+++.+..+.+ ......++..+...|..||..+ .+
T Consensus 288 ~~~~~-~---~~~~~~Gve~L~~~~~v~~Ll~LL~----------------~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~ 347 (584)
T 3l6x_A 288 NVANN-T---GTSPARGYELLFQPEVVRIYISLLK----------------ESKTPAILEASAGAIQNLCAGRWTYGRYI 347 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHH----------------HCCCHHHHHHHHHHHHHHHSSCSHHHHHH
T ss_pred ccccc-c---cccCchhHHHHhcccHHHHHHHHHc----------------cCCCHHHHHHHHHHHHHHHcCCccccHHH
Confidence 0000 0 0000000 01112222222221 1234566667777777775422 11
Q ss_pred ------HHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhh---hHhHHHHHHHHHHHHhhhc--------chhHHHHHHHH
Q 002971 310 ------DQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKL---ERAAERCISVLLELIKIKV--------NYVVQEAIIVI 372 (862)
Q Consensus 310 ------~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~---~~~~~~~v~~ll~ll~~~~--------~~v~~e~i~~l 372 (862)
...+.-|.+.+...+...++.++.+++.|+..- .......+..|+.+|..+. +.+...++..+
T Consensus 348 ~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL 427 (584)
T 3l6x_A 348 RSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTI 427 (584)
T ss_dssp HHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHH
Confidence 234666777888888899999999999987632 1123467888999988762 35667788888
Q ss_pred HHHHHhCcccHHH-----HHHHHHHhhccC-CchHHHHHHHHHHhhcccc
Q 002971 373 KDIFRRYPNTYES-----IIATLCESLDTL-DEPEAKASMIWIIGEYAER 416 (862)
Q Consensus 373 ~~i~~~~p~~~~~-----~i~~L~~~l~~~-~~~~~~~~~~wilGEy~~~ 416 (862)
.+|+..+++.... .+..|+..+.+- ..+.+.+.++|+|......
T Consensus 428 ~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 428 NEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred HHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 9998888776554 477888888753 3577888899999887654
No 61
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.32 E-value=5.2e-06 Score=86.12 Aligned_cols=210 Identities=14% Similarity=0.156 Sum_probs=144.7
Q ss_pred HHHHhhhCCCChHHHHHHHHHHHH-HHhhccccc--c-c-cchHHHHHHhh-cCCChhHHHHHHHHHHHHhhcCC-CCcc
Q 002971 84 DPLQRCLKDDDPYVRKTAAICVAK-LYDINAELV--E-D-RGFLESLKDLI-SDNNPMVVANAVAALAEIEENSS-RPIF 156 (862)
Q Consensus 84 ~~v~~~l~d~~~yVRk~A~~~l~k-l~~~~p~~~--~-~-~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~~~~-~~~~ 156 (862)
+...+.+.++++.-||.|+.++.. +...+|++. . + .++++.|.+.| +|.|+.|+..|+.++..++..-. +..-
T Consensus 19 ~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~ 98 (249)
T 2qk1_A 19 KDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFS 98 (249)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred hhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccccc
Confidence 345667789999999999999999 987777766 2 1 24677888899 79999999999999999987654 3333
Q ss_pred -cccHHHHHHHHHHhccCChhHHHHHHHHHhhcccc---cHHH--HHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccC
Q 002971 157 -EITSHTLSKLLTALNECTEWGQVFILDALSRYKAA---DARE--AENIVERVTPRLQHANCAVVLSAVKMILQQMELIT 230 (862)
Q Consensus 157 -~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~---~~~~--~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~ 230 (862)
......+..++..+.+..+=.+-.+-..|..+... .... .+.+++.+...++|.|+.|..+++.++..+....+
T Consensus 99 ~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 99 KDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 34556678888888876654443333333222211 1111 34678889999999999999999999988765322
Q ss_pred C-hHHHHHHH-Hhcccchhhccc-CChhHHHHHHHHHHHHHhhChh-hhhccceEEEecCCCcHHHHHHHHHHH
Q 002971 231 S-TDVVRNLC-KKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPT-ILAHEIKVFFCKYNDPIYVKMEKLEIM 300 (862)
Q Consensus 231 ~-~~~~~~~~-~~~~~~L~~lls-~~~~iry~aL~~l~~i~~~~p~-~~~~~~~~~~~l~~d~~~Ik~~~L~lL 300 (862)
. ++.+.... ..+++.|..++. +++++|-.+..++..+...-++ .+.+|+..+ ..+|+.++.-.
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L-------d~~k~~ki~~~ 245 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL-------DNLKRKKIEET 245 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS-------CHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH-------hHHHHHHHHHH
Confidence 2 13333344 567777778884 6889999999999998865433 355554322 23566666543
No 62
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.32 E-value=5.2e-06 Score=81.95 Aligned_cols=190 Identities=13% Similarity=0.124 Sum_probs=140.5
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCC-cccccHHHHHHHHHHhccCChhHHHHHHHHHhhcc---cccHHHH
Q 002971 121 FLESLKDLISDNNPMVVANAVAALAEIEENSSRP-IFEITSHTLSKLLTALNECTEWGQVFILDALSRYK---AADAREA 196 (862)
Q Consensus 121 ~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~-~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~---~~~~~~~ 196 (862)
.+..|..+|.|+|+.|+.+|+.++.++.+..++. ........+..+++.+.+.++-..++.+++|..+. |-+++..
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y 113 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF 113 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence 5678899999999999999999999998774432 23344556677777778889988888888887654 5567777
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhC--hh
Q 002971 197 ENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRR--PT 273 (862)
Q Consensus 197 ~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~--p~ 273 (862)
..+.+.+...+.+.|.....+|+-..-.+ . +.++. + ++...+.+|+ |+++.++-+||+.+..|+.+. |+
T Consensus 114 ~Kl~~aL~dlik~~~~il~~eaae~Lgkl-k-v~~~~--~----~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~ 185 (265)
T 3b2a_A 114 LKAAKTLVSLLESPDDMMRIETIDVLSKL-Q-PLEDS--K----LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSG 185 (265)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHC-C-BSCCC--H----HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCC
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHhCcC-C-cccch--H----HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHH
Confidence 88888889999999999999999988776 2 22211 1 2334455677 678999999999999999865 44
Q ss_pred hhhccce-EEEecCCCcHHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q 002971 274 ILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKE 318 (862)
Q Consensus 274 ~~~~~~~-~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~ 318 (862)
++..-.+ +=+.+.++|++++.++|++|..+.+..=.+.++.++..
T Consensus 186 i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~ 231 (265)
T 3b2a_A 186 HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLK 231 (265)
T ss_dssp CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHH
Confidence 5444333 23456778999999999999998886544455555543
No 63
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.31 E-value=0.00016 Score=90.02 Aligned_cols=459 Identities=12% Similarity=0.114 Sum_probs=224.6
Q ss_pred HHHhHh-ccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC-------hhhhH----
Q 002971 12 TDVVNC-MQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-------VDKIT---- 79 (862)
Q Consensus 12 ~~vv~l-~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~-------~~~~~---- 79 (862)
.+++.. ..+.|...|+-+.-++..+- .+|+-...+..-+. .+.++.+|-.|+.+|-+.. .++-.
T Consensus 27 ~~~l~~l~~~~~~~~r~~A~~~L~~~~-~~p~~~~~~~~lL~---~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir 102 (963)
T 2x19_B 27 EKALHQLYYDPNIENKNLAQKWLMQAQ-VSPQAWHFSWQLLQ---PDKVPEIQYFGASALHIKISRYWSDIPTDQYESLK 102 (963)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHH-HSTTHHHHHHHHTS---TTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHH
Confidence 344443 55678889999999998854 45674433333333 3678999999988887532 12222
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHHHHHHHhh-ccccccccchHHHHHHhhcC-----CChhHHHHHHHHHHHHhhcC--
Q 002971 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISD-----NNPMVVANAVAALAEIEENS-- 151 (862)
Q Consensus 80 ~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~-~p~~~~~~~~~~~l~~lL~d-----~d~~V~~~a~~~l~~i~~~~-- 151 (862)
+.++..+.+. .+..++||.+.+.++..+.+. +|+.-+ ++++.|..++.. .++...-.++..|..+.+.-
T Consensus 103 ~~ll~~l~~~-~~~~~~ir~kl~~~la~i~~~~~p~~Wp--~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~ 179 (963)
T 2x19_B 103 AQLFTQITRF-ASGSKIVLTRLCVALASLALSMMPDAWP--CAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQT 179 (963)
T ss_dssp HHHHHHHHHT-TTSCHHHHHHHHHHHHHHHHHHTTTTST--THHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhCccccc--hHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhc
Confidence 3344444332 124699999999999999886 465544 367777777764 25445556666665554320
Q ss_pred C----------CC-cccccHHHHHHHHHHhccC--ChhHHHHHHHHHhhccccc--HHHHHHHHHHHHHhhcCCChHHHH
Q 002971 152 S----------RP-IFEITSHTLSKLLTALNEC--TEWGQVFILDALSRYKAAD--AREAENIVERVTPRLQHANCAVVL 216 (862)
Q Consensus 152 ~----------~~-~~~l~~~~~~~Ll~~l~~~--~~w~q~~iL~~L~~~~~~~--~~~~~~il~~v~~~l~~~n~aV~~ 216 (862)
. +. .....+..+.-+...+.+. +.|....+|+++..+.+-+ ......+++.+...+. ++.+.-
T Consensus 180 ~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~--~~~~~~ 257 (963)
T 2x19_B 180 SRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQ--DSELFD 257 (963)
T ss_dssp CCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTT--STTTHH
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhC--CchHHH
Confidence 0 00 1111122222222333322 3478888888886554311 1111345555555553 344455
Q ss_pred HHHHHHHHhhhccCC---hHHHHHHHHhcccchhhc---c-cCChhHHHHHHHHHHHHHhhChhhhh------cc----c
Q 002971 217 SAVKMILQQMELITS---TDVVRNLCKKMAPPLVTL---L-SAEPEIQYVALRNINLIVQRRPTILA------HE----I 279 (862)
Q Consensus 217 eai~~i~~~~~~~~~---~~~~~~~~~~~~~~L~~l---l-s~~~~iry~aL~~l~~i~~~~p~~~~------~~----~ 279 (862)
.|+.++..+...-.. ...+..+...+...+-.+ + ..+.+..--..+.+..++..++..+. ++ +
T Consensus 258 ~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l 337 (963)
T 2x19_B 258 SSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALV 337 (963)
T ss_dssp HHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHH
Confidence 555665554321011 122222222111111011 1 12332222223444444444443332 11 1
Q ss_pred e-EEEecC-----CCcHHHHHHHHHHHHHhcCc-----------------CcHHHHHHHHHHhhh---hc-------c--
Q 002971 280 K-VFFCKY-----NDPIYVKMEKLEIMIKLASD-----------------RNIDQVLLEFKEYAT---EV-------D-- 324 (862)
Q Consensus 280 ~-~~~~l~-----~d~~~Ik~~~L~lL~~l~~~-----------------~Nv~~Iv~eL~~y~~---~~-------d-- 324 (862)
. .+.|.. ..+..+...+++....++.+ .-+..++..+...+. +. |
T Consensus 338 ~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~ 417 (963)
T 2x19_B 338 NMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEK 417 (963)
T ss_dssp HHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHH
T ss_pred HHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHH
Confidence 1 111222 12333566677776666551 011122222222221 10 0
Q ss_pred H---HHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhh-------cch-hHHHHHHHHHHHHHhCcccHHHHHHHHHHh
Q 002971 325 V---DFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK-------VNY-VVQEAIIVIKDIFRRYPNTYESIIATLCES 393 (862)
Q Consensus 325 ~---~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~-------~~~-v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~ 393 (862)
. ++|+.+...+..++...+. .+++.+++.+... .+. ..+.++..+..+.....+.....+..+++.
T Consensus 418 ~~~~~~r~~~~~~L~~~~~~~~~---~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~ 494 (963)
T 2x19_B 418 EQFRIYRVDISDTLMYVYEMLGA---ELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGL 494 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTH---HHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccH---HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHH
Confidence 1 2345555555555554432 3344444433221 122 233344455655554332111233444444
Q ss_pred hccC--CchHHHHHHHHHHhhcccccCC-H---HHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCC---ChHHHHHH
Q 002971 394 LDTL--DEPEAKASMIWIIGEYAERIDN-A---DELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTE---GPQQMIQV 464 (862)
Q Consensus 394 l~~~--~~~~~~~~~~wilGEy~~~i~~-~---~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~~~~---~~~~~i~~ 464 (862)
+..+ .+|.++..++|++|.|++.+.. + +.+++.++..+.+ +.|+.....|+.++....+.. -..+++..
T Consensus 495 l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~ 572 (963)
T 2x19_B 495 IPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAV 572 (963)
T ss_dssp GGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4333 3677888999999999987542 2 2344555555543 789999999999998655432 13455555
Q ss_pred HHHhcccCCCChHHHHHHHH
Q 002971 465 VLNNATVETDNPDLRDRAYI 484 (862)
Q Consensus 465 ~l~~~~~~s~~~dvrdRA~~ 484 (862)
+++.......+.+.|..+++
T Consensus 573 l~~~l~~~~~~~~~~~~~~e 592 (963)
T 2x19_B 573 SQDVLMKQIHKTSQCMWLMQ 592 (963)
T ss_dssp HHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHhccCCCChHHHHHHHH
Confidence 55543221223444444443
No 64
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.25 E-value=6.9e-05 Score=85.04 Aligned_cols=295 Identities=13% Similarity=0.137 Sum_probs=197.6
Q ss_pred cchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHH-----HHHHHhhcC-CCCHHHHhHHHHHhcCCCh-----hh
Q 002971 9 SLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILA-----VNTFVKDSQ-DPNPLIRALAVRTMGCIRV-----DK 77 (862)
Q Consensus 9 ~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~-----intl~kDl~-~~n~~ir~lALr~l~~i~~-----~~ 77 (862)
.+.+..++++.+++...++-+--++.+++..+++.-..+ +..|.+=|. ++++.++..|..+|+++.. ..
T Consensus 44 g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~ 123 (457)
T 1xm9_A 44 GGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123 (457)
T ss_dssp THHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHH
Confidence 357888999999999999999999999998767654444 456777787 8899999999888877653 22
Q ss_pred hHHHHHHHHHhhhC--------C--------CChHHHHHHHHHHHHHHhhccc---ccccc-chHHHHHHhhcC------
Q 002971 78 ITEYLCDPLQRCLK--------D--------DDPYVRKTAAICVAKLYDINAE---LVEDR-GFLESLKDLISD------ 131 (862)
Q Consensus 78 ~~~~l~~~v~~~l~--------d--------~~~yVRk~A~~~l~kl~~~~p~---~~~~~-~~~~~l~~lL~d------ 131 (862)
+++-.++.+.+++. + .++.|++.|+.|+..+... |+ .+.+. +.++.|..+|.+
T Consensus 124 i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~ 202 (457)
T 1xm9_A 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASR 202 (457)
T ss_dssp HHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTC
T ss_pred HHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccC
Confidence 44567788888882 2 3567888999999999865 54 23333 788999888874
Q ss_pred CChhHHHHHHHHHHHHhhc--------------------------------------------------CCCC-cccccH
Q 002971 132 NNPMVVANAVAALAEIEEN--------------------------------------------------SSRP-IFEITS 160 (862)
Q Consensus 132 ~d~~V~~~a~~~l~~i~~~--------------------------------------------------~~~~-~~~l~~ 160 (862)
.+..++-+|+.+|..++.. .+.. .+-+..
T Consensus 203 ~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 282 (457)
T 1xm9_A 203 CDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHS 282 (457)
T ss_dssp TTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSH
T ss_pred CchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCc
Confidence 4556777777766655310 0000 011234
Q ss_pred HHHHHHHHHhccC-ChhHHHHHHHHHhhcccccH---HHH-H------HHHHHHHHhhcCCChHHHHHHHHHHHHhhhcc
Q 002971 161 HTLSKLLTALNEC-TEWGQVFILDALSRYKAADA---REA-E------NIVERVTPRLQHANCAVVLSAVKMILQQMELI 229 (862)
Q Consensus 161 ~~~~~Ll~~l~~~-~~w~q~~iL~~L~~~~~~~~---~~~-~------~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~ 229 (862)
..++.|+..|... ++-.+......|..++..+. ... + ..+..+..+|++.+.-|..+|+.++.++..
T Consensus 283 ~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~-- 360 (457)
T 1xm9_A 283 DAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR-- 360 (457)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT--
T ss_pred chHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhc--
Confidence 5566676666544 56667777777776654321 111 1 235677888999999999999999988753
Q ss_pred CChHHHHHHHHhcccchhhccc-CC------hhHHHHHHHHHHHHHhhChhhh---hcc--ce-EEEecCCC-cHHHHHH
Q 002971 230 TSTDVVRNLCKKMAPPLVTLLS-AE------PEIQYVALRNINLIVQRRPTIL---AHE--IK-VFFCKYND-PIYVKME 295 (862)
Q Consensus 230 ~~~~~~~~~~~~~~~~L~~lls-~~------~~iry~aL~~l~~i~~~~p~~~---~~~--~~-~~~~l~~d-~~~Ik~~ 295 (862)
+++....+....+++|+.+|. .+ .++...++..|..|+...++.. ..+ +. ...++.++ +..|++.
T Consensus 361 -~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~ 439 (457)
T 1xm9_A 361 -HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEA 439 (457)
T ss_dssp -SGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHH
T ss_pred -CHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHH
Confidence 344334445568888999884 32 3588889999999987665421 111 11 22233444 5677777
Q ss_pred HHHHHHHhcCcC
Q 002971 296 KLEIMIKLASDR 307 (862)
Q Consensus 296 ~L~lL~~l~~~~ 307 (862)
|..+|..+...+
T Consensus 440 A~~~L~~~~~~~ 451 (457)
T 1xm9_A 440 ARLLLSDMWSSK 451 (457)
T ss_dssp HHHHHHTTSSST
T ss_pred HHHHHHHHHcch
Confidence 777777776543
No 65
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.22 E-value=5.5e-07 Score=83.54 Aligned_cols=118 Identities=19% Similarity=0.217 Sum_probs=88.8
Q ss_pred chHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhh
Q 002971 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRC 89 (862)
Q Consensus 10 lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~ 89 (862)
....++.++.+++...|..+..++..+... . +..|.+-|+|+++.+|..|+++|+.++.++.+ +.+.++
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~--~-----~~~L~~~L~d~~~~vR~~A~~aL~~~~~~~a~----~~L~~~ 81 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRMGDE--A-----FEPLLESLSNEDWRIRGAAAWIIGNFQDERAV----EPLIKL 81 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSCSST--T-----HHHHHHGGGCSCHHHHHHHHHHHGGGCSHHHH----HHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhCch--H-----HHHHHHHHcCCCHHHHHHHHHHHHhcCCHHHH----HHHHHH
Confidence 345566788888888888776666555432 1 47778888899999999999999999987654 456677
Q ss_pred hCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHH
Q 002971 90 LKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAE 146 (862)
Q Consensus 90 l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~ 146 (862)
+.|+++.||+.|+.++.++- + ...++.|..+|+|.|+.|...|+.+|..
T Consensus 82 L~d~~~~VR~~A~~aL~~~~--~------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 82 LEDDSGFVRSGAARSLEQIG--G------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHCCTHHHHHHHHHHHHHC--S------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HcCCCHHHHHHHHHHHHHhC--c------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 78999999999999999874 2 2367888999999999999999887754
No 66
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.21 E-value=7e-05 Score=88.05 Aligned_cols=285 Identities=11% Similarity=0.090 Sum_probs=168.0
Q ss_pred CHHHHhHHHHHhcCCCh-----hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccc----cccccchHHHHHHhh
Q 002971 59 NPLIRALAVRTMGCIRV-----DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE----LVEDRGFLESLKDLI 129 (862)
Q Consensus 59 n~~ir~lALr~l~~i~~-----~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~----~~~~~~~~~~l~~lL 129 (862)
++.+|.+|+-.|++++. ..-+..+.+.+.+.+.+.+.-.|+-|+-++..+- .+|+ +..+.++++.|.+++
T Consensus 307 ~~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLS-l~~~VKe~L~~d~~~L~~Lv~ll 385 (778)
T 3opb_A 307 VEDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLS-LKASVKIMIRSNESFTEILLTMI 385 (778)
T ss_dssp SGGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHT-TSSHHHHHHHHCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh-CCHHHHHHHHhCHHHHHHHHHHH
Confidence 36889999999988763 1223567788888888866556999999999875 3553 345667899999999
Q ss_pred cC-CChhHHHHHHHHHHHHhhcCCCCcc---c------c------------------------------cHHHHHHHHHH
Q 002971 130 SD-NNPMVVANAVAALAEIEENSSRPIF---E------I------------------------------TSHTLSKLLTA 169 (862)
Q Consensus 130 ~d-~d~~V~~~a~~~l~~i~~~~~~~~~---~------l------------------------------~~~~~~~Ll~~ 169 (862)
++ .+..+.+.++..|..+....+.... . + ..+.+..|+..
T Consensus 386 k~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~L 465 (778)
T 3opb_A 386 KSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKRE 465 (778)
T ss_dssp TTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHH
T ss_pred hCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHH
Confidence 85 7888999999999888764332100 0 0 00111222222
Q ss_pred hccCChhHHHHHHHHHhhcccccHHHHHH-----HHHHHHHhhcCCChH---HHHHHHHHHHHhhhccCChHHHH-H-HH
Q 002971 170 LNECTEWGQVFILDALSRYKAADAREAEN-----IVERVTPRLQHANCA---VVLSAVKMILQQMELITSTDVVR-N-LC 239 (862)
Q Consensus 170 l~~~~~w~q~~iL~~L~~~~~~~~~~~~~-----il~~v~~~l~~~n~a---V~~eai~~i~~~~~~~~~~~~~~-~-~~ 239 (862)
+...++=.|..+.++|..+... ++.... .+..+...+.+.... +...|+.++.+++- ..+|..+- . -.
T Consensus 466 l~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLli-s~np~~~f~~~~~ 543 (778)
T 3opb_A 466 MHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLI-FTNPGLIFKKYSA 543 (778)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHH-TSCHHHHSSSSCS
T ss_pred HcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHh-cCCHHHHcCCCcc
Confidence 2233444444555555444321 111111 234555666554332 66777788777642 12443320 0 00
Q ss_pred HhcccchhhcccCChh--------------H-HHHHHHHHHHHHhhC--------hhhhhc--cce-EEEecCCCcHHHH
Q 002971 240 KKMAPPLVTLLSAEPE--------------I-QYVALRNINLIVQRR--------PTILAH--EIK-VFFCKYNDPIYVK 293 (862)
Q Consensus 240 ~~~~~~L~~lls~~~~--------------i-ry~aL~~l~~i~~~~--------p~~~~~--~~~-~~~~l~~d~~~Ik 293 (862)
..++++|+.||..+++ + +|-||.+|..|+... ..++.. ... +..++.++...||
T Consensus 544 ~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~Vr 623 (778)
T 3opb_A 544 LNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQ 623 (778)
T ss_dssp TTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHH
T ss_pred ccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHH
Confidence 1345778888762222 1 888888888888753 113332 233 2345556677888
Q ss_pred HHHHHHHHHhcCcCc-H-HHH-----------HHHHHHhhhhccHHHHHHHHHHHHHHHHhhhHhH
Q 002971 294 MEKLEIMIKLASDRN-I-DQV-----------LLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAA 346 (862)
Q Consensus 294 ~~~L~lL~~l~~~~N-v-~~I-----------v~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~ 346 (862)
+.|.+++..|+...- + ..+ ++-|..++...|.+.++.+..+++.++..++..+
T Consensus 624 rAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia 689 (778)
T 3opb_A 624 RSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIA 689 (778)
T ss_dssp HHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHH
Confidence 888888888774332 1 122 4456677777788888888888877765554433
No 67
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.19 E-value=0.00066 Score=81.50 Aligned_cols=267 Identities=10% Similarity=0.114 Sum_probs=154.9
Q ss_pred HHHHHhhcC---CCCHHHHhHHHHHhcCCChh---hhHHHHHHHHHhhhCCCC--------hHHHHHHHHHHHHHHhhcc
Q 002971 48 VNTFVKDSQ---DPNPLIRALAVRTMGCIRVD---KITEYLCDPLQRCLKDDD--------PYVRKTAAICVAKLYDINA 113 (862)
Q Consensus 48 intl~kDl~---~~n~~ir~lALr~l~~i~~~---~~~~~l~~~v~~~l~d~~--------~yVRk~A~~~l~kl~~~~p 113 (862)
...|.+=|- +.++++|+-|+-.+|-|... +..+.| ...+.+.+ +.||.-|++++..+|--.-
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL----~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~ 469 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYL----KNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA 469 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHH----HHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHH----HHHHcCccccccccccHHHHHHHHHHHHHHhcCCC
Confidence 444555554 67899999999999877532 344444 44444433 8999999999998874322
Q ss_pred ccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhcc--CChhHHHHHHHHHhhcccc
Q 002971 114 ELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNE--CTEWGQVFILDALSRYKAA 191 (862)
Q Consensus 114 ~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~--~~~w~q~~iL~~L~~~~~~ 191 (862)
+ ++..+.|..+|.|.+..+...|..+|.-|.-..+. ...+..|+..+.+ -+.|..-.. -.|......
T Consensus 470 ~----eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn------~~ai~~LL~~~~e~~~e~vrR~aa-lgLGll~~g 538 (963)
T 4ady_A 470 N----IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK------PEAIHDMFTYSQETQHGNITRGLA-VGLALINYG 538 (963)
T ss_dssp C----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHCSCHHHHHHHH-HHHHHHTTT
T ss_pred C----HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC------HHHHHHHHHHHhccCcHHHHHHHH-HHHHhhhCC
Confidence 1 23667888888877765444555555555332221 2345556555432 234443322 223322233
Q ss_pred cHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhh
Q 002971 192 DAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQR 270 (862)
Q Consensus 192 ~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~ 270 (862)
+++.++.+++.+. .+.++.|.+.++-++..-.--..++..++.+.. .+. ..+.++|-.|.-.|..|...
T Consensus 539 ~~e~~~~li~~L~---~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~-------~~~~d~~d~VRraAViaLGlI~~g 608 (963)
T 4ady_A 539 RQELADDLITKML---ASDESLLRYGGAFTIALAYAGTGNNSAVKRLLH-------VAVSDSNDDVRRAAVIALGFVLLR 608 (963)
T ss_dssp CGGGGHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHH-------HHHHCSCHHHHHHHHHHHHHHTSS
T ss_pred ChHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHH-------HhccCCcHHHHHHHHHHHHhhccC
Confidence 3444445554432 356788888887665421111245555443221 222 24557888888888887766
Q ss_pred ChhhhhccceEEEecCCCcHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHh
Q 002971 271 RPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIK 341 (862)
Q Consensus 271 ~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k 341 (862)
.|+.+.+.+.. ...+.++.||+.+.-.|-.++..+.-..+++-|..+..+.|.++|..++.++|.++..
T Consensus 609 ~~e~v~rlv~~--L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 609 DYTTVPRIVQL--LSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp SCSSHHHHTTT--GGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence 66543222211 1124456777777777766665555566777666777777777777777777776653
No 68
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.17 E-value=9.2e-07 Score=82.02 Aligned_cols=118 Identities=18% Similarity=0.235 Sum_probs=91.8
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHH
Q 002971 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (862)
Q Consensus 47 ~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~ 126 (862)
.++.+.+.|+|+|+.+|..|++.|+.++.+. .+.+.+++.|+++.||..|+.++.++-. ...++.|.
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~~-----~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~a~~~L~ 79 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRMGDEA-----FEPLLESLSNEDWRIRGAAAWIIGNFQD--------ERAVEPLI 79 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSCSSTT-----HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhCchH-----HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HHHHHHHH
Confidence 4567788999999999999999999999875 3677899999999999999999987642 23678888
Q ss_pred HhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhh
Q 002971 127 DLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSR 187 (862)
Q Consensus 127 ~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~ 187 (862)
.+|.|.|+.|...|+.+|..+.. ...+..|+..+.+.++|.+....+.|.+
T Consensus 80 ~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 80 KLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 99999999999999999998852 2356777777888889888877776653
No 69
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.15 E-value=8.4e-05 Score=83.71 Aligned_cols=332 Identities=11% Similarity=0.069 Sum_probs=178.0
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHHhcCCChhhh----HH-HHHHHHHhhhCCC------------ChHHHHHHHHHHHHHH
Q 002971 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKI----TE-YLCDPLQRCLKDD------------DPYVRKTAAICVAKLY 109 (862)
Q Consensus 47 ~intl~kDl~~~n~~ir~lALr~l~~i~~~~~----~~-~l~~~v~~~l~d~------------~~yVRk~A~~~l~kl~ 109 (862)
.+..+...+.+.|+.-..-.|-.|+. .++. .+ -.+|.+.++|.+. ++-+|..|+.|+.-|.
T Consensus 33 ~~~~l~~~~~~~~~~~~~~~ll~~~~--~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~ 110 (458)
T 3nmz_A 33 MVYSLLSMLGTHDKDDMSRTLLAMSS--SQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNII 110 (458)
T ss_dssp ------------CCHHHHHHHHHHHS--STTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHc--CCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHH
Confidence 34566666666665543333333332 2232 21 3356777777753 3799999999999999
Q ss_pred hhccccccc---cchH----------HHHHHhhcCC--------ChhH-------HHHHHHHHHHHhhcCCCCc-ccccH
Q 002971 110 DINAELVED---RGFL----------ESLKDLISDN--------NPMV-------VANAVAALAEIEENSSRPI-FEITS 160 (862)
Q Consensus 110 ~~~p~~~~~---~~~~----------~~l~~lL~d~--------d~~V-------~~~a~~~l~~i~~~~~~~~-~~l~~ 160 (862)
...||.... .+.+ +.+.+++... ++ | ..+|+.+|..|..+ +... .-...
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~ 188 (458)
T 3nmz_A 111 HSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNP-MPAPVEHQICPAVCVLMKLSFD-EEHRHAMNEL 188 (458)
T ss_dssp HHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC---CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHT
T ss_pred ccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCC-ccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHC
Confidence 999986542 1222 2233344322 11 3 34788888877543 1110 00112
Q ss_pred HHHHHHHHHhcc-----------CChhHHHHHHHHHhhcccccHHHH------HHHHHHHHHhhcCCChHHHHHHHHHHH
Q 002971 161 HTLSKLLTALNE-----------CTEWGQVFILDALSRYKAADAREA------ENIVERVTPRLQHANCAVVLSAVKMIL 223 (862)
Q Consensus 161 ~~~~~Ll~~l~~-----------~~~w~q~~iL~~L~~~~~~~~~~~------~~il~~v~~~l~~~n~aV~~eai~~i~ 223 (862)
..+..|+..|.. .++-.|......|..++..++... ...+..+..+|++.+..|.-.|+.++.
T Consensus 189 G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~ 268 (458)
T 3nmz_A 189 GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLR 268 (458)
T ss_dssp THHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 344555555521 123456677777777665544222 234677788899989999999999988
Q ss_pred HhhhccCChHHHHHHH-Hhcccchhhcc-c-CChhHHHHHHHHHHHHHhhCh----hhhhc--cceE-EEecCCC-c---
Q 002971 224 QQMELITSTDVVRNLC-KKMAPPLVTLL-S-AEPEIQYVALRNINLIVQRRP----TILAH--EIKV-FFCKYND-P--- 289 (862)
Q Consensus 224 ~~~~~~~~~~~~~~~~-~~~~~~L~~ll-s-~~~~iry~aL~~l~~i~~~~p----~~~~~--~~~~-~~~l~~d-~--- 289 (862)
++.. -.+++....+. ...+++|+.+| + .+++++-.++..|..|+...+ .+... -+.. ...+.+. +
T Consensus 269 nLs~-~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~ 347 (458)
T 3nmz_A 269 NLSW-RADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 347 (458)
T ss_dssp HHTS-SCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSST
T ss_pred HHhc-CCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcch
Confidence 8732 11333322222 14567788864 4 567888888888888876332 22211 1111 1122221 1
Q ss_pred HHHHHHHHHHHHHhc-----CcCcHHHH-----HHHHHHhhhhccHHHHHHHHHHHHHHHHhhhHhH-----HHHHHHHH
Q 002971 290 IYVKMEKLEIMIKLA-----SDRNIDQV-----LLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAA-----ERCISVLL 354 (862)
Q Consensus 290 ~~Ik~~~L~lL~~l~-----~~~Nv~~I-----v~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~-----~~~v~~ll 354 (862)
..++..+.-+|..|+ +++|...+ +..|.+.+.+.+.+.++.++.+|+.++...+... .-++..|+
T Consensus 348 ~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv 427 (458)
T 3nmz_A 348 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLK 427 (458)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence 146777777776665 44554443 3445566666667777777777777763222111 13355666
Q ss_pred HHHhhhcchhHHHHHHHHHHHHHhCcccH
Q 002971 355 ELIKIKVNYVVQEAIIVIKDIFRRYPNTY 383 (862)
Q Consensus 355 ~ll~~~~~~v~~e~i~~l~~i~~~~p~~~ 383 (862)
+++..+...+...+...+.+|..++|..|
T Consensus 428 ~LL~s~~~~v~~~Aa~AL~nL~~~~p~ky 456 (458)
T 3nmz_A 428 NLIHSKHKMIAMGSAAALRNLMANRPAKY 456 (458)
T ss_dssp TTTTCSSHHHHHHHHHHHHHHHTCCSCC-
T ss_pred HHHhCCCHHHHHHHHHHHHHHHcCCHhhh
Confidence 66665555566666666666666666544
No 70
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.12 E-value=2.9e-05 Score=79.97 Aligned_cols=140 Identities=18% Similarity=0.218 Sum_probs=111.9
Q ss_pred CcccchH-HHhHhccCCCcchHHHHHHHHHHhcCCC-----CcHHHHHHHHHHhhcC-CCCHHHHhHHHHHhcCCCh---
Q 002971 6 DVSSLFT-DVVNCMQTENLELKKLVYLYLINYAKSQ-----PDLAILAVNTFVKDSQ-DPNPLIRALAVRTMGCIRV--- 75 (862)
Q Consensus 6 dvs~lf~-~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~-----~el~~L~intl~kDl~-~~n~~ir~lALr~l~~i~~--- 75 (862)
|+..-++ .+...+.+++...|+.+...+..+.+.. ++. .-+++.+.+-+. |+|+.+|..|+++++.+..
T Consensus 11 di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~ 89 (242)
T 2qk2_A 11 DILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA 89 (242)
T ss_dssp CCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG
T ss_pred cccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh
Confidence 4444444 4667889999999999999998887652 232 335777888784 8999999999999998763
Q ss_pred h---hhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhc
Q 002971 76 D---KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (862)
Q Consensus 76 ~---~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 150 (862)
+ ..++.+++.+.+.+.|+++.||..|..|+..++...+ +. .+++.+...|.++++.|...++..+..+...
T Consensus 90 ~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~--~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~ 163 (242)
T 2qk2_A 90 KRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE--AQQESIVESLSNKNPSVKSETALFIARALTR 163 (242)
T ss_dssp GGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH--HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH--HHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 2 4556789999999999999999999999999987543 22 4789999999999999999999988886443
No 71
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.06 E-value=0.0015 Score=61.88 Aligned_cols=213 Identities=16% Similarity=0.174 Sum_probs=110.9
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHH-HHHHHHHHHHhhcCCCCcccc
Q 002971 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVV-ANAVAALAEIEENSSRPIFEI 158 (862)
Q Consensus 80 ~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~-~~a~~~l~~i~~~~~~~~~~l 158 (862)
+.+...+.+.|.|.-+.|+|.|+.-+..+.+.+|++.+. ....|..|++-+...=. .....++..++..+| ++
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep--l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P----e~ 104 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP--MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP----EL 104 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH--HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH----HH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH--HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH----HH
Confidence 355666777788888888888888888888888887764 66666666653322111 111122222222222 11
Q ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHH
Q 002971 159 TSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNL 238 (862)
Q Consensus 159 ~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~ 238 (862)
..+.+.-|...+.--+|-..+.+=-.|......+++....+.+.+...+.+
T Consensus 105 v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smlts----------------------------- 155 (253)
T 2db0_A 105 VKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSS----------------------------- 155 (253)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSC-----------------------------
T ss_pred HHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcC-----------------------------
Confidence 122222222222222333333333333333333333333333333333333
Q ss_pred HHhcccchhhcccCChhHHHHHHHHHHHHHhhChhhhhccce-EEEecCCCcHHHHHHHHHHHHHhcCcCc-HHHHHHHH
Q 002971 239 CKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASDRN-IDQVLLEF 316 (862)
Q Consensus 239 ~~~~~~~L~~lls~~~~iry~aL~~l~~i~~~~p~~~~~~~~-~~~~l~~d~~~Ik~~~L~lL~~l~~~~N-v~~Iv~eL 316 (862)
++..-|.++|.-|.-+...++..+.+++. .|-.++++|.-+|..+.+.|..++.-+- +..++.+-
T Consensus 156 -------------kd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~k 222 (253)
T 2db0_A 156 -------------KNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKR 222 (253)
T ss_dssp -------------SSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred -------------CChHHHHHHHHHHHHHhccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 34445555555555555555555555554 3445666667777777777776654221 44555555
Q ss_pred HHhhhhccHHHHHHHHHHHHHHHH
Q 002971 317 KEYATEVDVDFVRKAVRAIGRCAI 340 (862)
Q Consensus 317 ~~y~~~~d~~~~~~~i~~I~~la~ 340 (862)
++-+.+.+..+..++..++++++.
T Consensus 223 l~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 223 LEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHH
Confidence 555566666777777777777653
No 72
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.03 E-value=0.00027 Score=88.13 Aligned_cols=428 Identities=10% Similarity=0.077 Sum_probs=207.6
Q ss_pred HHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC-------hhhh----HHH
Q 002971 13 DVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-------VDKI----TEY 81 (862)
Q Consensus 13 ~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~-------~~~~----~~~ 81 (862)
+++..+.+.|-..|+-+.-++..+ +.+|+.-..+..-+.+ +.++.+|-.|+.+|-+.. .++- -+.
T Consensus 11 ~~l~~~~~~d~~~r~~A~~~L~~~-~~~p~~w~~~~~lL~~---~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ 86 (971)
T 2x1g_F 11 EAVVSFYRSNSQNQAITHEWLTDA-EASPQAWQFSWQLMQL---GKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQK 86 (971)
T ss_dssp CTHHHHHTSTTTC----CHHHHHT-TTSTHHHHHHHHHTCT---TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHH-HcCHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHH
Confidence 344444567777888888888874 4557744444433332 578999999988887532 1222 234
Q ss_pred HHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCC------ChhHHHHHHHHHHHHhh----cC
Q 002971 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDN------NPMVVANAVAALAEIEE----NS 151 (862)
Q Consensus 82 l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~------d~~V~~~a~~~l~~i~~----~~ 151 (862)
++..+.+.- ...++||.+.+.|+..+.+.+-..-+ ++++.|..++... ++...-.++..|..+++ .+
T Consensus 87 ll~~l~~~~-~~~~~vr~kl~~~la~i~~~~~p~Wp--~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~ 163 (971)
T 2x1g_F 87 ILESIVRFA-GGPKIVLNRLCISLGAYIVHMLGEWP--GAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIH 163 (971)
T ss_dssp HHHHHHHHT-TSCHHHHHHHHHHHHHHHHHTTCC--------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHHHHcccccc--HHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccC
Confidence 444444433 23689999999999999987422222 2455666666543 45555556666654443 22
Q ss_pred CCCc----ccccHHHHHHHHH----HhccC-Ch------h-HHHHHHHHHhhcc-----cccHHHHHHHHHHHHHhhc--
Q 002971 152 SRPI----FEITSHTLSKLLT----ALNEC-TE------W-GQVFILDALSRYK-----AADAREAENIVERVTPRLQ-- 208 (862)
Q Consensus 152 ~~~~----~~l~~~~~~~Ll~----~l~~~-~~------w-~q~~iL~~L~~~~-----~~~~~~~~~il~~v~~~l~-- 208 (862)
.... .+.....+..++. .+... ++ | .....|+++..|. |.+ ....+++.+.. +.
T Consensus 164 ~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~--~~~~ll~~l~~-L~~~ 240 (971)
T 2x1g_F 164 TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE--GCVTITAVLLE-VVHK 240 (971)
T ss_dssp CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG--GHHHHHHHHHH-HHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc--ccccHHHHHHh-hhhh
Confidence 1100 0111111222222 22111 11 3 4556677776543 222 22344554444 30
Q ss_pred --------------CCChHHHHHHHHHHHHhhhccCC----hHHHHHHHHhcccchhhc----ccCCh---hHHHHHHHH
Q 002971 209 --------------HANCAVVLSAVKMILQQMELITS----TDVVRNLCKKMAPPLVTL----LSAEP---EIQYVALRN 263 (862)
Q Consensus 209 --------------~~n~aV~~eai~~i~~~~~~~~~----~~~~~~~~~~~~~~L~~l----ls~~~---~iry~aL~~ 263 (862)
+.++.+.-.|+.++..+... .. ...+..+...+....-.+ -..+. +..+...+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l 319 (971)
T 2x1g_F 241 CYWPCIHAGDGCMTADENELAESCLKTMVNIIIQ-PDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYML 319 (971)
T ss_dssp HHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHC-SGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHH
T ss_pred hccccccccccccCcCCcHHHHHHHHHHHHHHcC-ccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHH
Confidence 12345556666777665431 11 122322222111111111 12343 566666777
Q ss_pred HHHHHhhChhhhh-----------ccc----eE-EEec-C----CCcHHHHHHHHHHHHHhcCc----------CcH---
Q 002971 264 INLIVQRRPTILA-----------HEI----KV-FFCK-Y----NDPIYVKMEKLEIMIKLASD----------RNI--- 309 (862)
Q Consensus 264 l~~i~~~~p~~~~-----------~~~----~~-~~~l-~----~d~~~Ik~~~L~lL~~l~~~----------~Nv--- 309 (862)
+..++..++..+. .++ .. +.+. . .++..+...+++.++.++.+ ...
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~ 399 (971)
T 2x1g_F 320 FVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEY 399 (971)
T ss_dssp HHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 7777766665543 122 21 2222 1 34566888888888777541 111
Q ss_pred -HHH----HHHHHHhhh---hc-----c-------HHHHHHHHHHHHHHHHhhh-HhHHHHHHHHHHHHhhh----cc-h
Q 002971 310 -DQV----LLEFKEYAT---EV-----D-------VDFVRKAVRAIGRCAIKLE-RAAERCISVLLELIKIK----VN-Y 363 (862)
Q Consensus 310 -~~I----v~eL~~y~~---~~-----d-------~~~~~~~i~~I~~la~k~~-~~~~~~v~~ll~ll~~~----~~-~ 363 (862)
..+ +..+..-+. +. | .++|+.+...+..++..++ ......++.+...+... .+ .
T Consensus 400 ~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~ 479 (971)
T 2x1g_F 400 IKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWT 479 (971)
T ss_dssp HHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCH
T ss_pred HHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHH
Confidence 222 233322221 10 1 1356666666666666554 12222233333333221 12 1
Q ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHhhccCC----chHHHHHHHHHHhhcccccCC----HHHHHHHHhhhCCCCC
Q 002971 364 VVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLD----EPEAKASMIWIIGEYAERIDN----ADELLESFLESFPEEP 435 (862)
Q Consensus 364 v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~----~~~~~~~~~wilGEy~~~i~~----~~~~l~~~~~~~~~e~ 435 (862)
..+.++..+..|.+..++.....+..+++.+..+. +|.++..++|++|.|++.+.. -+.++..++..+ +
T Consensus 480 ~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~-- 556 (971)
T 2x1g_F 480 KLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N-- 556 (971)
T ss_dssp HHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--
T ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--
Confidence 33334445555544332211223334444332222 677889999999999987653 334555555555 2
Q ss_pred HHHHHHHHHHHHHHhhcCC
Q 002971 436 AQVQLQLLTATVKLFLKKP 454 (862)
Q Consensus 436 ~~v~~~iLta~~Kl~~~~~ 454 (862)
+.|+...-.|+.++....+
T Consensus 557 ~~v~~~A~~al~~l~~~~~ 575 (971)
T 2x1g_F 557 SSMSAQATLGLKELCRDCQ 575 (971)
T ss_dssp SSCHHHHHHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 6788888888888886554
No 73
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.00 E-value=0.00043 Score=86.16 Aligned_cols=243 Identities=12% Similarity=0.150 Sum_probs=137.9
Q ss_pred cchHHHHHHHHHHhcCCCCcHHH-HHHHHHHhhcC------CCCHHHHhHHHHHhcCCCh---------h------hhHH
Q 002971 23 LELKKLVYLYLINYAKSQPDLAI-LAVNTFVKDSQ------DPNPLIRALAVRTMGCIRV---------D------KITE 80 (862)
Q Consensus 23 ~~~Kkl~Yl~l~~~~~~~~el~~-L~intl~kDl~------~~n~~ir~lALr~l~~i~~---------~------~~~~ 80 (862)
.+.|+-+.-.+..++...++..+ .+.+.+..=+. ++|...|-.||..++.|.. . ++.+
T Consensus 375 ~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~ 454 (960)
T 1wa5_C 375 DTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVD 454 (960)
T ss_dssp -CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHH
T ss_pred cCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHH
Confidence 46677777777777776665333 22222222222 5677888899998777621 1 4555
Q ss_pred HHHHHHHhhhCCC---ChHHHHHHHHHHHHHHhh-ccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCC----
Q 002971 81 YLCDPLQRCLKDD---DPYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS---- 152 (862)
Q Consensus 81 ~l~~~v~~~l~d~---~~yVRk~A~~~l~kl~~~-~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~---- 152 (862)
.+...|...+.|+ +|+||.+|+.++.++... .|+... ..++.+...|.|.++.|..+|+.+|..++....
T Consensus 455 ~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~--~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~ 532 (960)
T 1wa5_C 455 FFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLI--ELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTS 532 (960)
T ss_dssp HHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHH--HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSS
T ss_pred HHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHH--HHHHHHHHHhCCCChhHHHHHHHHHHHHHhccccccc
Confidence 5555566667777 999999999999998765 333333 256677778888899999999999999876421
Q ss_pred -------CCcccccHHHHHHHHHHhccC---------ChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhh----cC-CC
Q 002971 153 -------RPIFEITSHTLSKLLTALNEC---------TEWGQVFILDALSRYKAADAREAENIVERVTPRL----QH-AN 211 (862)
Q Consensus 153 -------~~~~~l~~~~~~~Ll~~l~~~---------~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l----~~-~n 211 (862)
........+.+.+|+..+... .+.+--.+-+++..+...-..-...+++.+...+ ++ .+
T Consensus 533 ~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~ 612 (960)
T 1wa5_C 533 PAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSN 612 (960)
T ss_dssp CCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCC
T ss_pred ccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCC
Confidence 112334556667777666553 2222222222222221110011223333333222 22 23
Q ss_pred h---HHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhcccC-ChhHHHHHHHHHHHHHhhC
Q 002971 212 C---AVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSA-EPEIQYVALRNINLIVQRR 271 (862)
Q Consensus 212 ~---aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~lls~-~~~iry~aL~~l~~i~~~~ 271 (862)
. .-+++|+.+++.. ..++....+...+.+++...+.. ..+..=-++..+..+....
T Consensus 613 ~~~~~~~~e~l~~l~~~----~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 613 PRFTHYTFESIGAILNY----TQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp HHHHHHHHHHHHHHHHT----SCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence 3 3357777776653 24445555666677777777743 2333333666666666543
No 74
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.97 E-value=0.00022 Score=77.72 Aligned_cols=216 Identities=12% Similarity=0.083 Sum_probs=148.2
Q ss_pred CCHHHHhHHHHHhcCCC-----hhhhH---HHHHHHHHhhhCCCChHHHHHHHHHHHHHHhh-cc---ccccccchHHHH
Q 002971 58 PNPLIRALAVRTMGCIR-----VDKIT---EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI-NA---ELVEDRGFLESL 125 (862)
Q Consensus 58 ~n~~ir~lALr~l~~i~-----~~~~~---~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~-~p---~~~~~~~~~~~l 125 (862)
.++.++-.|..+|.++. .+..+ .-.++.+.++|.+.++.||..|+.++..+... ++ +.+.+.+.++.|
T Consensus 96 ~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 96 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 45777877777777664 12222 34589999999999999999999999998753 33 344456788999
Q ss_pred HHhh-cCCChhHHHHHHHHHHHHhhcCCCCcccc--cHHHHHHHHHHhccCC--hh--HHHHHHHHHhhccc---ccHHH
Q 002971 126 KDLI-SDNNPMVVANAVAALAEIEENSSRPIFEI--TSHTLSKLLTALNECT--EW--GQVFILDALSRYKA---ADARE 195 (862)
Q Consensus 126 ~~lL-~d~d~~V~~~a~~~l~~i~~~~~~~~~~l--~~~~~~~Ll~~l~~~~--~w--~q~~iL~~L~~~~~---~~~~~ 195 (862)
.++| ...++.++.+|+.+|..++.+.......+ ....+..|++.|...+ +| .+.....+|..+.. .+++.
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 255 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH
Confidence 9974 66788999999999999876322111111 3456777777776543 34 34444444444332 23333
Q ss_pred HHH-----HHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHH-Hhcccchhhcc-cCChhHHHHHHHHHHHHH
Q 002971 196 AEN-----IVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC-KKMAPPLVTLL-SAEPEIQYVALRNINLIV 268 (862)
Q Consensus 196 ~~~-----il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~-~~~~~~L~~ll-s~~~~iry~aL~~l~~i~ 268 (862)
... .+..+..+|++.+..+.-+|+.++.++.. .+++....+. ...+++|+.|| ++++.+|-.+...|..|+
T Consensus 256 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~--~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~ 333 (354)
T 3nmw_A 256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA--RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 333 (354)
T ss_dssp HHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTS--SCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhC--CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 332 35677788999899999999999998742 3455444332 24577889998 578899999999999999
Q ss_pred hhChhhh
Q 002971 269 QRRPTIL 275 (862)
Q Consensus 269 ~~~p~~~ 275 (862)
...|...
T Consensus 334 ~~~~~~~ 340 (354)
T 3nmw_A 334 ANRPAKY 340 (354)
T ss_dssp TTCCGGG
T ss_pred cCCHHHH
Confidence 8877643
No 75
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.94 E-value=0.00026 Score=75.04 Aligned_cols=186 Identities=12% Similarity=0.036 Sum_probs=135.6
Q ss_pred CCcccchHHHhHhccCCC------------cchHHHHHHHHHHhcCCCCcHHHH-----HHHHHHh-hcCCCCHHHHhHH
Q 002971 5 KDVSSLFTDVVNCMQTEN------------LELKKLVYLYLINYAKSQPDLAIL-----AVNTFVK-DSQDPNPLIRALA 66 (862)
Q Consensus 5 ~dvs~lf~~vv~l~~s~~------------~~~Kkl~Yl~l~~~~~~~~el~~L-----~intl~k-Dl~~~n~~ir~lA 66 (862)
.|......+++..+.++. .+.|..+.--+..+.+. .|.+.. .+..|.+ -|.++++.+|..|
T Consensus 24 ~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~A 102 (296)
T 1xqr_A 24 RGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRA 102 (296)
T ss_dssp HHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHH
Confidence 566667788888887753 24555555555555553 232222 3455667 8999999999999
Q ss_pred HHHhcCCC--hhhhHH-----HHHHHHHhhhCC-CChHHHHHHHHHHHHHHhhccc---cccccchHHHHHHhhcCCChh
Q 002971 67 VRTMGCIR--VDKITE-----YLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNPM 135 (862)
Q Consensus 67 Lr~l~~i~--~~~~~~-----~l~~~v~~~l~d-~~~yVRk~A~~~l~kl~~~~p~---~~~~~~~~~~l~~lL~d~d~~ 135 (862)
+++|++|. +++.-+ ..++.+.++|.+ +++-||++|+.|+..+.+.+|+ .+.+.+.++.|..+|.+.|+.
T Consensus 103 a~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~ 182 (296)
T 1xqr_A 103 AQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQK 182 (296)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHH
Confidence 99999985 343322 356888888884 6899999999999999987665 344456889999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCccc-ccHHHHHHHHHHhccCChhHHHHHHHHHhhcccc
Q 002971 136 VVANAVAALAEIEENSSRPIFE-ITSHTLSKLLTALNECTEWGQVFILDALSRYKAA 191 (862)
Q Consensus 136 V~~~a~~~l~~i~~~~~~~~~~-l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~ 191 (862)
|...|+.+|..++..++..... .....++.|+..|...++-.+...++.|..+...
T Consensus 183 v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 183 LKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 9999999999998764432211 1235677888888877888888888888766544
No 76
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.84 E-value=0.00011 Score=76.00 Aligned_cols=137 Identities=10% Similarity=0.100 Sum_probs=108.2
Q ss_pred HhccCCCcchHHHHHHHHHH-hcCCCCcHH------HHHHHHHHhhc-CCCCHHHHhHHHHHhcCCCh----hh----hH
Q 002971 16 NCMQTENLELKKLVYLYLIN-YAKSQPDLA------ILAVNTFVKDS-QDPNPLIRALAVRTMGCIRV----DK----IT 79 (862)
Q Consensus 16 ~l~~s~~~~~Kkl~Yl~l~~-~~~~~~el~------~L~intl~kDl-~~~n~~ir~lALr~l~~i~~----~~----~~ 79 (862)
..++|++-..||-++..+.. +.+..+++. .-++..+.+-+ +|+|+.+|..|+++++.+.. +. ..
T Consensus 23 ~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~ 102 (249)
T 2qk1_A 23 ERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYV 102 (249)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHH
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHH
Confidence 45689999999999999999 875433321 23478888889 79999999999999988652 33 34
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhc-ccccc--ccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCC
Q 002971 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN-AELVE--DRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (862)
Q Consensus 80 ~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~-p~~~~--~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~ 152 (862)
..+++.+...+.|+.+.||..|..|+-.++... |.... -..+++.|...|...++.|...++..+..+....+
T Consensus 103 ~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 103 SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 567899999999999999999999999999854 33221 12478888899999999999999999988876543
No 77
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=97.82 E-value=0.00034 Score=78.70 Aligned_cols=214 Identities=13% Similarity=0.095 Sum_probs=145.4
Q ss_pred CCHHHHhHHHHHhcCCC---h--hhhH---HHHHHHHHhhhCCCChHHHHHHHHHHHHHHhh-cc---ccccccchHHHH
Q 002971 58 PNPLIRALAVRTMGCIR---V--DKIT---EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI-NA---ELVEDRGFLESL 125 (862)
Q Consensus 58 ~n~~ir~lALr~l~~i~---~--~~~~---~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~-~p---~~~~~~~~~~~l 125 (862)
.++.++-.|..+|.++. . +..+ .-.++.+.++|.+.++.|+..|+.++..+... ++ +.+.+.+.++.|
T Consensus 212 ~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~L 291 (458)
T 3nmz_A 212 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 291 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHH
Confidence 35667766666666654 1 2232 34589999999999999999999999998653 33 344456788999
Q ss_pred HHhh-cCCChhHHHHHHHHHHHHhhcCCCCcccc--cHHHHHHHHHHhccCC--hh--HHHHHHHHHhhccc---ccHHH
Q 002971 126 KDLI-SDNNPMVVANAVAALAEIEENSSRPIFEI--TSHTLSKLLTALNECT--EW--GQVFILDALSRYKA---ADARE 195 (862)
Q Consensus 126 ~~lL-~d~d~~V~~~a~~~l~~i~~~~~~~~~~l--~~~~~~~Ll~~l~~~~--~w--~q~~iL~~L~~~~~---~~~~~ 195 (862)
.++| ...++.+..+|+.+|..++.+.......+ ....+..|++.|...+ +| .+.....+|..+.. .+++.
T Consensus 292 V~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 371 (458)
T 3nmz_A 292 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 371 (458)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHH
Confidence 9975 55788999999999999887321111111 2355677777776543 44 34444444444332 33333
Q ss_pred HHH-----HHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHH-Hhcccchhhcc-cCChhHHHHHHHHHHHHH
Q 002971 196 AEN-----IVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC-KKMAPPLVTLL-SAEPEIQYVALRNINLIV 268 (862)
Q Consensus 196 ~~~-----il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~-~~~~~~L~~ll-s~~~~iry~aL~~l~~i~ 268 (862)
... .+..+..+|++.+..|.-+|+.++.++.. .+++....+. ...+++|+.|| ++++.+|-.|...|..|+
T Consensus 372 ~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~--~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~ 449 (458)
T 3nmz_A 372 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA--RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 449 (458)
T ss_dssp HHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHS--SCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHc--CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 332 35567788899889999999999998742 3455444332 24578889998 578899999999999999
Q ss_pred hhChh
Q 002971 269 QRRPT 273 (862)
Q Consensus 269 ~~~p~ 273 (862)
..+|.
T Consensus 450 ~~~p~ 454 (458)
T 3nmz_A 450 ANRPA 454 (458)
T ss_dssp TCCSC
T ss_pred cCCHh
Confidence 88774
No 78
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.045 Score=64.47 Aligned_cols=359 Identities=13% Similarity=0.096 Sum_probs=184.9
Q ss_pred chHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccH-H----
Q 002971 120 GFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADA-R---- 194 (862)
Q Consensus 120 ~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~-~---- 194 (862)
++++.|..++++. .+..-|+..|..+.......... +......+.+.+...+.-.+-..++.|+...-... +
T Consensus 296 ~~~~~L~~~l~~~--~ir~lAavvL~KL~~~~~~~~~s-i~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~ 372 (778)
T 3opb_A 296 NYLQLLERSLNVE--DVQIYSALVLVKTWSFTKLTCIN-LKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIR 372 (778)
T ss_dssp HHHHHHHHHTTSG--GGHHHHHHHHHHHTGGGTCTTCC-HHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHH
T ss_pred hHHHHHHHHhccH--HHHHHHHHHHHHHhcCCCCCcCc-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4556666666542 44444455555554332111111 11233333333433221124444555554432211 1
Q ss_pred HHHHHHHHHHHhhcC-CChHHHHHHHHHHHHhhhccCCh----HHHHHHHHhcccchhhccc-CChhHHH--HHHHHHHH
Q 002971 195 EAENIVERVTPRLQH-ANCAVVLSAVKMILQQMELITST----DVVRNLCKKMAPPLVTLLS-AEPEIQY--VALRNINL 266 (862)
Q Consensus 195 ~~~~il~~v~~~l~~-~n~aV~~eai~~i~~~~~~~~~~----~~~~~~~~~~~~~L~~lls-~~~~iry--~aL~~l~~ 266 (862)
+....+..+...+++ .+..+.|++..++.++..+.++. ..+.++. .+.. +.|+..- ..+..=..
T Consensus 373 ~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk--------~~A~~~~p~~~~~d~~~~~~~~ 444 (778)
T 3opb_A 373 SNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXX--------XXXXXXXPAADKVGAEKAAKED 444 (778)
T ss_dssp HCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC--------------------------CCTHHHHHHH
T ss_pred hCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhh--------hhccccCcccCcccccccchHH
Confidence 112346677777875 67789999999999987543221 0111111 1110 0011000 00111111
Q ss_pred HHhhChhh-hhcc-ceE-EEecCCCcHHHHHHHHHHHHHhcCcC-cHHHH-----HHHHHHhhhhccHH---HHHHHHHH
Q 002971 267 IVQRRPTI-LAHE-IKV-FFCKYNDPIYVKMEKLEIMIKLASDR-NIDQV-----LLEFKEYATEVDVD---FVRKAVRA 334 (862)
Q Consensus 267 i~~~~p~~-~~~~-~~~-~~~l~~d~~~Ik~~~L~lL~~l~~~~-Nv~~I-----v~eL~~y~~~~d~~---~~~~~i~~ 334 (862)
+...+... +... +.. ..++.+++..+|..+..+|+.|+... |-..+ ++-|+.++.+.... .+..+..+
T Consensus 445 v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~A 524 (778)
T 3opb_A 445 ILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRA 524 (778)
T ss_dssp HHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHH
Confidence 11100011 1110 111 12345677889999999999997544 44333 45677787665433 78899999
Q ss_pred HHHHHHhhhHh-------HHHHHHHHHHHHhhh-cc-------------hhHHHHHHHHHHHHHhC----cccHHHHH--
Q 002971 335 IGRCAIKLERA-------AERCISVLLELIKIK-VN-------------YVVQEAIIVIKDIFRRY----PNTYESII-- 387 (862)
Q Consensus 335 I~~la~k~~~~-------~~~~v~~ll~ll~~~-~~-------------~v~~e~i~~l~~i~~~~----p~~~~~~i-- 387 (862)
+++|+....+. ....+..|++||... +. .-..+++..+.++.... ++.+..++
T Consensus 525 LArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~ 604 (778)
T 3opb_A 525 LTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVST 604 (778)
T ss_dssp HHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHS
T ss_pred HHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHh
Confidence 99998643211 125678899998721 11 11557888888887653 13444444
Q ss_pred ----HHHHHhhccCCchHHHHHHHHHHhhcccc-------cC---CHH--HHHHHHhhhCCCCCHHHHHHHHHHHHHHhh
Q 002971 388 ----ATLCESLDTLDEPEAKASMIWIIGEYAER-------ID---NAD--ELLESFLESFPEEPAQVQLQLLTATVKLFL 451 (862)
Q Consensus 388 ----~~L~~~l~~~~~~~~~~~~~wilGEy~~~-------i~---~~~--~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~ 451 (862)
..|.+.+.+ ..+.++++++|++...... +- ++. .-+..++.-...++..+|.++.-|++-+..
T Consensus 605 ~ga~~~L~~LL~s-~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts 683 (778)
T 3opb_A 605 KVYWSTIENLMLD-ENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIAT 683 (778)
T ss_dssp HHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhC-CCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 344444433 3556788888888654321 11 111 125666665567889999988888887755
Q ss_pred cCCCC-----ChHHHHHHHHHhcccCCCChHHHHHHHHHHHHhc
Q 002971 452 KKPTE-----GPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLS 490 (862)
Q Consensus 452 ~~~~~-----~~~~~i~~~l~~~~~~s~~~dvrdRA~~y~~ll~ 490 (862)
..|.. .....+..++..+.....|.++|.|+...+.-+.
T Consensus 684 ~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~ 727 (778)
T 3opb_A 684 TIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLF 727 (778)
T ss_dssp HCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 44421 0123455566655432478999999988765443
No 79
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.79 E-value=0.00031 Score=74.48 Aligned_cols=141 Identities=12% Similarity=0.134 Sum_probs=114.8
Q ss_pred chHHHhH-hccCCCcchHHHHHHHHHHhcCCCCcHHHH-----HHHHHHhhcC-CCCHHHHhHHHHHhcCCC--hhhhHH
Q 002971 10 LFTDVVN-CMQTENLELKKLVYLYLINYAKSQPDLAIL-----AVNTFVKDSQ-DPNPLIRALAVRTMGCIR--VDKITE 80 (862)
Q Consensus 10 lf~~vv~-l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L-----~intl~kDl~-~~n~~ir~lALr~l~~i~--~~~~~~ 80 (862)
+++.++. ++.+++..+|.-+--.+.+++..+++.--. ++..|.+=|+ ++++.+|..|+.+|+++. .+...+
T Consensus 82 ~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~ 161 (296)
T 1xqr_A 82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLL 161 (296)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHH
Confidence 5677888 999999999999999999999888764332 3344555555 458999999999999984 333221
Q ss_pred -----HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccc---ccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhc
Q 002971 81 -----YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (862)
Q Consensus 81 -----~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 150 (862)
..++.+.++|.+.++-||++|+.++..+...+|+. +.+.++++.|..+|...|+.|+..|+.+|..|...
T Consensus 162 ~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 162 QFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 45788999999999999999999999998887764 33568999999999999999999999999998765
No 80
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.76 E-value=0.065 Score=66.43 Aligned_cols=129 Identities=9% Similarity=0.092 Sum_probs=87.0
Q ss_pred CCCCHHHHhHHHHHhcCCCh------hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhh---ccccccccchHHHHH
Q 002971 56 QDPNPLIRALAVRTMGCIRV------DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI---NAELVEDRGFLESLK 126 (862)
Q Consensus 56 ~~~n~~ir~lALr~l~~i~~------~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~---~p~~~~~~~~~~~l~ 126 (862)
.+.+...+-.|+.+++.|.. .+..+.+++.+. .+.+.+|.||.+|+.++.++.+. +|+.++ ..++.|.
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~--~vl~~l~ 535 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RISISNVQLADTVMFTIGALSEWLADHPVMIN--SVLPLVL 535 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHT--TTHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHH--HHHHHHH
Confidence 56788888888888887752 133444555333 33456899999999999987653 455555 3777787
Q ss_pred HhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhcc--CChhHHHHHHHHHhhcc
Q 002971 127 DLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNE--CTEWGQVFILDALSRYK 189 (862)
Q Consensus 127 ~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~--~~~w~q~~iL~~L~~~~ 189 (862)
..|.| +.|...|+.+|..+++.-+..........+..|...+.. .+.-.+..+++.+....
T Consensus 536 ~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~ 598 (963)
T 2x19_B 536 HALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLL 598 (963)
T ss_dssp HHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Confidence 77865 889999999999998764333334455556666665553 34556667777776544
No 81
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.72 E-value=0.0011 Score=72.20 Aligned_cols=221 Identities=14% Similarity=0.129 Sum_probs=131.0
Q ss_pred ChhHHHHHHHHHHHHhhcCCCCcccc--cHHHHHHHHHHhccCChhHHHHHHHHHhhcccc-cHHHHHH-----HHHHHH
Q 002971 133 NPMVVANAVAALAEIEENSSRPIFEI--TSHTLSKLLTALNECTEWGQVFILDALSRYKAA-DAREAEN-----IVERVT 204 (862)
Q Consensus 133 d~~V~~~a~~~l~~i~~~~~~~~~~l--~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~-~~~~~~~-----il~~v~ 204 (862)
++.+..+|..+|..++..+......+ ....+..|+..|...++-.|......|..+... +++.... .+..+.
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 46677788888888875542221222 345578888888877888887777777666543 3332222 245566
Q ss_pred Hh-hcCCChHHHHHHHHHHHHhhhccCChHHHHHHH--HhcccchhhcccC-Ch----hHHHHHHHHHHHHHh---hChh
Q 002971 205 PR-LQHANCAVVLSAVKMILQQMELITSTDVVRNLC--KKMAPPLVTLLSA-EP----EIQYVALRNINLIVQ---RRPT 273 (862)
Q Consensus 205 ~~-l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~--~~~~~~L~~lls~-~~----~iry~aL~~l~~i~~---~~p~ 273 (862)
.. +++.+..+.-.|+.++.++.. .+++....+. ...+++|+.+|.. ++ +++.-+...|..|+. ..++
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~--~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~ 254 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSA--HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNED 254 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHc--cChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHH
Confidence 65 456677888888888887632 1333223332 2355667777742 22 355555555544443 1211
Q ss_pred hhhccceEEEecCCCcHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhHhH-----HH
Q 002971 274 ILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAA-----ER 348 (862)
Q Consensus 274 ~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~-----~~ 348 (862)
. |. .+.+.. .+.-|.+.+.+.+.+.++.++.+|+.++..-+... .-
T Consensus 255 ~------------------~~-------~i~~~g----~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G 305 (354)
T 3nmw_A 255 H------------------RQ-------ILRENN----CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG 305 (354)
T ss_dssp H------------------HH-------HHHTTT----HHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTT
T ss_pred H------------------HH-------HHHHcC----CHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCC
Confidence 0 00 011111 24455566667778888888888888874322211 13
Q ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHHHhCcccHH
Q 002971 349 CISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYE 384 (862)
Q Consensus 349 ~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~ 384 (862)
.+..|++++..+...+..++...+.++....|+.++
T Consensus 306 ~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~~ 341 (354)
T 3nmw_A 306 AVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYK 341 (354)
T ss_dssp HHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHHh
Confidence 477788888877777778888888888888777654
No 82
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.65 E-value=0.0073 Score=57.26 Aligned_cols=197 Identities=14% Similarity=0.159 Sum_probs=142.0
Q ss_pred cCCCcHHHHHHHHHHHHHhcC--cCcHHHHHHHHHHhhhh-ccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhc
Q 002971 285 KYNDPIYVKMEKLEIMIKLAS--DRNIDQVLLEFKEYATE-VDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKV 361 (862)
Q Consensus 285 l~~d~~~Ik~~~L~lL~~l~~--~~Nv~~Iv~eL~~y~~~-~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~ 361 (862)
+++|-..++.-+|.++..++. ++=++..+++|...++. .....-.++.+++|.+|.--|.-....|..+..-+..+.
T Consensus 41 LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vVp~lfanyrigd 120 (253)
T 2db0_A 41 LDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGD 120 (253)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS
T ss_pred hccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhHHHHHHHHhcCC
Confidence 434447788888888887754 45577788888877653 446677888999999998777777788888888777777
Q ss_pred chhHHHHHHHHHHHHHhCcccHHHHHHHHHHhhccCCchHHHHHHHHHHhhccccc-CCHHHHHHHHhhhCCCCCHHHHH
Q 002971 362 NYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERI-DNADELLESFLESFPEEPAQVQL 440 (862)
Q Consensus 362 ~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i-~~~~~~l~~~~~~~~~e~~~v~~ 440 (862)
+.+.-.+-.++..|.+.||++-..++..+.-.+.+-+ ..-+.++.-.+|-.|+-- ....-.+..+..-+.+.+..||+
T Consensus 121 ~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd-~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D~deiVRa 199 (253)
T 2db0_A 121 EKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKN-REDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRA 199 (253)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSS-HHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGCSSHHHHH
T ss_pred ccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHhccCccccCcchHHHHHHHcCcchhhhH
Confidence 7776667778999999999998888888877676322 223555555555544311 00112344555556678999999
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHhcccCCCChHHHHHHHHHH
Q 002971 441 QLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYW 486 (862)
Q Consensus 441 ~iLta~~Kl~~~~~~~~~~~~i~~~l~~~~~~s~~~dvrdRA~~y~ 486 (862)
....++++++..+|. .++.+...++. .++.+-+|+-...+-+
T Consensus 200 SaVEtL~~lA~~npk--lRkii~~kl~e--~~D~S~lv~~~V~egL 241 (253)
T 2db0_A 200 SAVEALVHLATLNDK--LRKVVIKRLEE--LNDTSSLVNKTVKEGI 241 (253)
T ss_dssp HHHHHHHHHHTSCHH--HHHHHHHHHHH--CCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHH--HHHHHHHHHHH--hcCcHHHHHHHHHHHH
Confidence 999999999999986 78888888886 3556777877766654
No 83
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.65 E-value=0.11 Score=57.21 Aligned_cols=134 Identities=16% Similarity=0.244 Sum_probs=107.8
Q ss_pred hHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhh
Q 002971 11 FTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCL 90 (862)
Q Consensus 11 f~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l 90 (862)
|-.++..... +...|||+--++..|++.-|++.--++|++..=+.|.+..||.-|+|.|..++-.+.+.-+.+-+.++|
T Consensus 31 y~~Il~~~kg-~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlL 109 (507)
T 3u0r_A 31 YQVILDGVKG-GTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLL 109 (507)
T ss_dssp HHHHHHGGGS-CHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHH
Confidence 5556665544 689999999999999999999999999999999999999999999999999997788999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhc
Q 002971 91 KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (862)
Q Consensus 91 ~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 150 (862)
...++--+...=.++..+++.+|...-. ++...|.. .+..|.--++..|.+-...
T Consensus 110 qtdd~~E~~~V~~sL~sllk~Dpk~tl~-~lf~~i~~----~~e~~Rer~lkFi~~kl~~ 164 (507)
T 3u0r_A 110 QTDDSAEFNLVNNALLSIFKMDAKGTLG-GLFSQILQ----GEDIVRERAIKFLSTKLKT 164 (507)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHCHHHHHH-HHHHHHHH----SCHHHHHHHHHHHHHHGGG
T ss_pred hccchHHHHHHHHHHHHHHhcChHHHHH-HHHHHHcc----cchHHHHHHHHHHHHHHhh
Confidence 9988888888888888888888864321 23333332 4567777777776654433
No 84
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.65 E-value=0.0041 Score=78.07 Aligned_cols=129 Identities=13% Similarity=0.103 Sum_probs=80.9
Q ss_pred HHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC-------hhhhHHHHHH
Q 002971 12 TDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-------VDKITEYLCD 84 (862)
Q Consensus 12 ~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~-------~~~~~~~l~~ 84 (862)
.+++..+.+++-..|+-+.-++..+ +.+|+....+..-+.+ +.++.+|-.|+.+|-+.. .++-.+.+-.
T Consensus 19 ~~~l~~~~~p~~~~r~~Ae~~L~~~-~~~p~~~~~l~~iL~~---s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~ 94 (1049)
T 3m1i_C 19 DQVVSTFYQGSGVQQKQAQEILTKF-QDNPDAWQKADQILQF---STNPQSKFIALSILDKLITRKWKLLPNDHRIGIRN 94 (1049)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHH-HHSTTGGGGHHHHHHH---CSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHH-HhCchHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHH
Confidence 3455555566667888899888877 4556754445544544 568999999988887532 2233333333
Q ss_pred HHHhhhCC----C-----ChHHHHHHHHHHHHHHhh-ccccccccchHHHHHHhhcCCChhHHHHHHHHHHHH
Q 002971 85 PLQRCLKD----D-----DPYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISDNNPMVVANAVAALAEI 147 (862)
Q Consensus 85 ~v~~~l~d----~-----~~yVRk~A~~~l~kl~~~-~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i 147 (862)
.+...+.+ . +++||.+.+.++..+.+. .|+.-+ ++++.|..+++ .++...-+++.+|..+
T Consensus 95 ~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp--~ll~~L~~~~~-~~~~~~~~~l~~L~~l 164 (1049)
T 3m1i_C 95 FVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWP--EFIPELIGSSS-SSVNVCENNMIVLKLL 164 (1049)
T ss_dssp HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCT--THHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccch--HHHHHHHHHHc-cChHHHHHHHHHHHHH
Confidence 44444433 2 589999999999999987 575444 36777777776 4444333344444333
No 85
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.55 E-value=0.011 Score=71.09 Aligned_cols=289 Identities=11% Similarity=0.037 Sum_probs=167.3
Q ss_pred CcccchHHHhHhcc---CCCcchHHHHHHHHHHhcCCC-CcHHHHHHHHHHhhcC-CC---CHHHHhHHHHHhcCCChhh
Q 002971 6 DVSSLFTDVVNCMQ---TENLELKKLVYLYLINYAKSQ-PDLAILAVNTFVKDSQ-DP---NPLIRALAVRTMGCIRVDK 77 (862)
Q Consensus 6 dvs~lf~~vv~l~~---s~~~~~Kkl~Yl~l~~~~~~~-~el~~L~intl~kDl~-~~---n~~ir~lALr~l~~i~~~~ 77 (862)
++..+...+-+.+. +++...|.=+.+++....... .+..-+..+.+..+-. .. ++.+|.-|.-.||-+..-.
T Consensus 389 ~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS 468 (963)
T 4ady_A 389 NLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGS 468 (963)
T ss_dssp CTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTC
T ss_pred chHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCC
Confidence 33445555555665 556666766777776654433 2433444555544421 11 3677766666887653211
Q ss_pred hHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHH-HHhhcCCChhHHHHHHHHHHHHhhcCCCCcc
Q 002971 78 ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESL-KDLISDNNPMVVANAVAALAEIEENSSRPIF 156 (862)
Q Consensus 78 ~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l-~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~ 156 (862)
--+.+.+.++..+.|.++.+|..|++++..+|--..+ .+.+..| ..+..+.+-.|...+..+|..+...++.
T Consensus 469 ~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn----~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e--- 541 (963)
T 4ady_A 469 ANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK----PEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE--- 541 (963)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---
T ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---
Confidence 1234445567777788889999999999998763322 1233333 3345566777888888888777544332
Q ss_pred cccHHHHHHHHHHhc-cCChhHHHHHHHH--HhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChH
Q 002971 157 EITSHTLSKLLTALN-ECTEWGQVFILDA--LSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTD 233 (862)
Q Consensus 157 ~l~~~~~~~Ll~~l~-~~~~w~q~~iL~~--L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~ 233 (862)
.+..+++.|. +.+|+.+.-..-. +......+....+.++..+ ..+.+.-|...|+-.+-.+. +.+++
T Consensus 542 -----~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~---~~d~~d~VRraAViaLGlI~--~g~~e 611 (963)
T 4ady_A 542 -----LADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVA---VSDSNDDVRRAAVIALGFVL--LRDYT 611 (963)
T ss_dssp -----GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHH---HHCSCHHHHHHHHHHHHHHT--SSSCS
T ss_pred -----HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHh---ccCCcHHHHHHHHHHHHhhc--cCCHH
Confidence 2334444443 3455544332222 2334445554444455443 34566677776666655432 23443
Q ss_pred HHHHHHHhcccchhh-cc-cCChhHHHHHHHHHHHHHhhChh--hhhccceEEEecCCCcHHHHHHHHHHHHHhcCc---
Q 002971 234 VVRNLCKKMAPPLVT-LL-SAEPEIQYVALRNINLIVQRRPT--ILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASD--- 306 (862)
Q Consensus 234 ~~~~~~~~~~~~L~~-ll-s~~~~iry~aL~~l~~i~~~~p~--~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~--- 306 (862)
.. +.++. |+ +.++.+||-+-.++..+....|. ++.- +. ....|.|..||+-|+--|-.+.-.
T Consensus 612 ~v--------~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~-L~--~L~~D~d~~Vrq~Ai~ALG~Ig~gtnn 680 (963)
T 4ady_A 612 TV--------PRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDV-LD--PLTKDPVDFVRQAAMIALSMILIQQTE 680 (963)
T ss_dssp SH--------HHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHH-HH--HHHTCSSHHHHHHHHHHHHHHSTTCCT
T ss_pred HH--------HHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHH-HH--HHccCCCHHHHHHHHHHHHHHhcCCcc
Confidence 32 22333 33 46899999999999999876653 2220 10 124577799999999888777643
Q ss_pred C---cHHHHHHHHHHhhhh
Q 002971 307 R---NIDQVLLEFKEYATE 322 (862)
Q Consensus 307 ~---Nv~~Iv~eL~~y~~~ 322 (862)
. .+..+++.|..|..+
T Consensus 681 a~~~rva~~l~~L~~~~~d 699 (963)
T 4ady_A 681 KLNPQVADINKNFLSVITN 699 (963)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHHhc
Confidence 2 377888888888764
No 86
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.55 E-value=0.11 Score=64.38 Aligned_cols=426 Identities=11% Similarity=0.044 Sum_probs=213.4
Q ss_pred CCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCC----Chh-------hhHHHHHHHHHh
Q 002971 20 TENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI----RVD-------KITEYLCDPLQR 88 (862)
Q Consensus 20 s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i----~~~-------~~~~~l~~~v~~ 88 (862)
+.|...|+-++-++..+-+. ||--..+..-+.+ -...++.+|-.|+.+|-+. ... .+-+.+...+.+
T Consensus 19 ~sd~~~r~~A~~~L~~~q~s-p~aw~~~~~iL~~-~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l~~ 96 (980)
T 3ibv_A 19 SVGPIIKQQATDFIGSLRSS-STGWKICHEIFSE-KTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIKE 96 (980)
T ss_dssp TSCHHHHHHHHHHHHHHHHS-TTHHHHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcC-hhHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHH
Confidence 44789999999999887554 6744444433322 2223889999998887642 222 122344444444
Q ss_pred hhC-CCChHHHHHHHHHHHHHHhh-ccccccccchHHHHHHhhcCCCh-hHHHHHHHHHHHHhhcCCCCc----------
Q 002971 89 CLK-DDDPYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISDNNP-MVVANAVAALAEIEENSSRPI---------- 155 (862)
Q Consensus 89 ~l~-d~~~yVRk~A~~~l~kl~~~-~p~~~~~~~~~~~l~~lL~d~d~-~V~~~a~~~l~~i~~~~~~~~---------- 155 (862)
.-. +..++||.|.+.++..+++. +|+.-++ +++.+..++...++ .++...+..|..|.+.-....
T Consensus 97 ~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~--~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r 174 (980)
T 3ibv_A 97 LSFLDEPAYISNAVQHLLTLLFLQLYPSNWND--FFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQK 174 (980)
T ss_dssp CCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTT--HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHH
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHhCcccCch--HHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhh
Confidence 211 35789999999999999876 5776553 77888888765444 344444555553333211000
Q ss_pred ----ccccHHH-----HHHHHHHhcc----CChhHHHHHHHHHhhccccc-HHHH--HHHHHHHHHhhcCCChHHHHHHH
Q 002971 156 ----FEITSHT-----LSKLLTALNE----CTEWGQVFILDALSRYKAAD-AREA--ENIVERVTPRLQHANCAVVLSAV 219 (862)
Q Consensus 156 ----~~l~~~~-----~~~Ll~~l~~----~~~w~q~~iL~~L~~~~~~~-~~~~--~~il~~v~~~l~~~n~aV~~eai 219 (862)
.+..... +...+..+.. .++=.....|++|..|...- .... ..+++.+...+.. +.+.-.|+
T Consensus 175 ~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ 252 (980)
T 3ibv_A 175 DNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAAC 252 (980)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHH
T ss_pred hHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHH
Confidence 0110000 1222222222 24445567788888776531 1111 3566666666654 66777777
Q ss_pred HHHHHhhhccCChHHHHHHHHh--cccchhhcc--cCChhHHH--HH-----HHHHHHHHhhCh------------hhhh
Q 002971 220 KMILQQMELITSTDVVRNLCKK--MAPPLVTLL--SAEPEIQY--VA-----LRNINLIVQRRP------------TILA 276 (862)
Q Consensus 220 ~~i~~~~~~~~~~~~~~~~~~~--~~~~L~~ll--s~~~~iry--~a-----L~~l~~i~~~~p------------~~~~ 276 (862)
.++..+...-.+++....+... +.+.+..+. ..+.+..- .- -..+..+ ...| ..+.
T Consensus 253 ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~ 331 (980)
T 3ibv_A 253 ETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAI-KSDPSELSPELKENCSFQLY 331 (980)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH-ccCccccchhhhhhHHHHHH
Confidence 7777664322233322121111 111111222 23444311 00 0112222 2233 2222
Q ss_pred ccce-EEEecCCCcHHHHHHHHHHHHHhcC-----------cCcHHHHHHHHHH----hhh---h----c----c-----
Q 002971 277 HEIK-VFFCKYNDPIYVKMEKLEIMIKLAS-----------DRNIDQVLLEFKE----YAT---E----V----D----- 324 (862)
Q Consensus 277 ~~~~-~~~~l~~d~~~Ik~~~L~lL~~l~~-----------~~Nv~~Iv~eL~~----y~~---~----~----d----- 324 (862)
..+. ++.|..+++..|-..+++.+..... ..-...++..|+. -+. + . |
T Consensus 332 ~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F 411 (980)
T 3ibv_A 332 NLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEF 411 (980)
T ss_dssp HTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHH
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHH
Confidence 3333 3456555566777777776665442 1112334444432 111 1 1 1
Q ss_pred HHHHHHHHHHHHHHHHhhhHhHHHHHH----HHHHHHhhhcchhHHHHHH-------HHHHHHHhCcc----------cH
Q 002971 325 VDFVRKAVRAIGRCAIKLERAAERCIS----VLLELIKIKVNYVVQEAII-------VIKDIFRRYPN----------TY 383 (862)
Q Consensus 325 ~~~~~~~i~~I~~la~k~~~~~~~~v~----~ll~ll~~~~~~v~~e~i~-------~l~~i~~~~p~----------~~ 383 (862)
.+||+++-..+-.++...+ +.|++ .+..++......-...-|. .+..+-...++ ..
T Consensus 412 ~e~Rk~l~~l~d~~~~l~~---~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~l 488 (980)
T 3ibv_A 412 QEMRKKLKIFQDTINSIDS---SLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSP 488 (980)
T ss_dssp HHHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCB
T ss_pred HHHHHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchh
Confidence 1356555522222333222 34444 4544444321000112233 22222111111 11
Q ss_pred HHHHHHHHHhhc----cCCchHHHHHHHHHHhhcccccCC----HHHHHHHHhh--hCCCCCHHHHHHHHHHHHHHhhcC
Q 002971 384 ESIIATLCESLD----TLDEPEAKASMIWIIGEYAERIDN----ADELLESFLE--SFPEEPAQVQLQLLTATVKLFLKK 453 (862)
Q Consensus 384 ~~~i~~L~~~l~----~~~~~~~~~~~~wilGEy~~~i~~----~~~~l~~~~~--~~~~e~~~v~~~iLta~~Kl~~~~ 453 (862)
..++.-+...++ ...+|.++...+|++|.|++.+.. -+.+|..|+. .+.+.+..||...-.++.++....
T Consensus 489 p~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~ 568 (980)
T 3ibv_A 489 TVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI 568 (980)
T ss_dssp CHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHh
Confidence 123333333332 135788888999999999998754 3567777777 666667789988888888887766
Q ss_pred CC
Q 002971 454 PT 455 (862)
Q Consensus 454 ~~ 455 (862)
..
T Consensus 569 ~~ 570 (980)
T 3ibv_A 569 KK 570 (980)
T ss_dssp TT
T ss_pred hH
Confidence 54
No 87
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.54 E-value=0.023 Score=70.69 Aligned_cols=196 Identities=13% Similarity=0.119 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHhcCc---CcHHHHHHHHHHhhhh-----ccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh----
Q 002971 291 YVKMEKLEIMIKLASD---RNIDQVLLEFKEYATE-----VDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIK---- 358 (862)
Q Consensus 291 ~Ik~~~L~lL~~l~~~---~Nv~~Iv~eL~~y~~~-----~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~---- 358 (862)
..|+.+-++|..++.- .-...+++.+.+.+.. .+..-++.++.++|.+++........+++.++.++.
T Consensus 436 ~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~ 515 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPY 515 (971)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCc
Confidence 4566666666665543 2334444444444443 455678889999999998776544445555555442
Q ss_pred -hhcchhHHHHHH---HHHHHHHhCcccHHHHHHHHHHhhccCCchHHHHHHHHHHhhcccccC-----CHHHHHHHHhh
Q 002971 359 -IKVNYVVQEAII---VIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID-----NADELLESFLE 429 (862)
Q Consensus 359 -~~~~~v~~e~i~---~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~-----~~~~~l~~~~~ 429 (862)
.....|...++. ++...+..+|+....++..+++.++ |.+...++|.+..+++... ..+.++..+.+
T Consensus 516 ~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~----~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~ 591 (971)
T 2x1g_F 516 EKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGLN----SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHA 591 (971)
T ss_dssp TTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHHH----SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhC----hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 113445555544 3455555667777778888887773 5666777788877765432 23445555544
Q ss_pred hCCC--CCHHHHHHHHHHHHHHhhcCCCCChHHHHHH----HHH---hcccCCC-ChHHHHHHHHHHHHhc
Q 002971 430 SFPE--EPAQVQLQLLTATVKLFLKKPTEGPQQMIQV----VLN---NATVETD-NPDLRDRAYIYWRLLS 490 (862)
Q Consensus 430 ~~~~--e~~~v~~~iLta~~Kl~~~~~~~~~~~~i~~----~l~---~~~~~s~-~~dvrdRA~~y~~ll~ 490 (862)
-+.. .+...|..++.+++.++...|.++..+.+.. +++ ....... +.+-+.....+..+|.
T Consensus 592 ~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~ 662 (971)
T 2x1g_F 592 SLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMIS 662 (971)
T ss_dssp HHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHH
T ss_pred HHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Confidence 3333 4688999999999999987663323332222 222 2222222 5556666667776664
No 88
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.50 E-value=0.0027 Score=62.90 Aligned_cols=180 Identities=13% Similarity=0.146 Sum_probs=138.2
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccc---cchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcc
Q 002971 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED---RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIF 156 (862)
Q Consensus 80 ~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~---~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~ 156 (862)
+.....+..+|.|.++.||-.|.+++-++.+.-|+.... ..+.+.+..++.+.|-.|...|+-++..+....|
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vp---- 107 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVP---- 107 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCC----
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCC----
Confidence 345677889999999999999999999999876543321 2478999999999999999999999999887643
Q ss_pred cccHHHHHHHHHHh----ccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCCh
Q 002971 157 EITSHTLSKLLTAL----NECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITST 232 (862)
Q Consensus 157 ~l~~~~~~~Ll~~l----~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~ 232 (862)
+.++.+.++.+.+ .+.++-+..++.+.+....+.+. ...+++.+..++.+.|.-|--.+++++..+..+..++
T Consensus 108 -L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~--~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~ 184 (265)
T 3b2a_A 108 -MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLED--SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS 184 (265)
T ss_dssp -BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC--CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred -CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccc--hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence 4556666666655 45788888888888888755432 3466777788889999999999999999886554444
Q ss_pred HHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhh
Q 002971 233 DVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQR 270 (862)
Q Consensus 233 ~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~ 270 (862)
+... .+..-+..+| +.++.++-.||..+..|...
T Consensus 185 ~i~~----~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 185 GHLT----LILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp CCGG----GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHH----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 4333 3444455677 56899999999999998865
No 89
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.31 E-value=0.2 Score=57.56 Aligned_cols=133 Identities=17% Similarity=0.113 Sum_probs=79.8
Q ss_pred hccCCCcchHHHHHHHHHHhcCCCCcH-----HHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhh--------------
Q 002971 17 CMQTENLELKKLVYLYLINYAKSQPDL-----AILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDK-------------- 77 (862)
Q Consensus 17 l~~s~~~~~Kkl~Yl~l~~~~~~~~el-----~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~-------------- 77 (862)
+-.+.-++.||-+-+.+.-+++..++. +--.+++|++|-. |..+...+|.+|.++-.++
T Consensus 30 l~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~--D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~ 107 (651)
T 3grl_A 30 VASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRS--DSEIIGYALDTLYNIISNDEEEEVEENSTRQSE 107 (651)
T ss_dssp HHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTT--CHHHHHHHHHHHHHHHCCC--------------
T ss_pred HhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccc--cHHHHHHHHHHHHHHhCCCCcccccccccccch
Confidence 455778999999999999999988764 4557889999964 4455566899887643221
Q ss_pred -----hHH------HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccccc-----ccchHHHHHHhhcCCChhHHHHHH
Q 002971 78 -----ITE------YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE-----DRGFLESLKDLISDNNPMVVANAV 141 (862)
Q Consensus 78 -----~~~------~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~-----~~~~~~~l~~lL~d~d~~V~~~a~ 141 (862)
.++ .-++.+..+|.+.+-|||-.|+.++..+....|+.+. .++=++.|..+|+|+.-.+...|+
T Consensus 108 ~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneal 187 (651)
T 3grl_A 108 DLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGV 187 (651)
T ss_dssp CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHH
Confidence 111 1234445555555555555555555555555554221 123345555555555555555555
Q ss_pred HHHHHHhhcC
Q 002971 142 AALAEIEENS 151 (862)
Q Consensus 142 ~~l~~i~~~~ 151 (862)
.+|.++.+++
T Consensus 188 lLL~~Lt~~n 197 (651)
T 3grl_A 188 LLLQALTRSN 197 (651)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhcCC
Confidence 5555555443
No 90
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.31 E-value=0.086 Score=60.53 Aligned_cols=183 Identities=15% Similarity=0.134 Sum_probs=120.3
Q ss_pred HhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhh-cC-CChhHHHHHHHHHHHHhhcCCCC----------
Q 002971 87 QRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLI-SD-NNPMVVANAVAALAEIEENSSRP---------- 154 (862)
Q Consensus 87 ~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL-~d-~d~~V~~~a~~~l~~i~~~~~~~---------- 154 (862)
.++-...-.-=||.|+.++-.+.+.+|+.+...++ +.+...| +| .|.-++..++-.|..+...+...
T Consensus 28 ~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l-~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~ 106 (651)
T 3grl_A 28 DRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAM-EHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQS 106 (651)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTH-HHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-------------
T ss_pred HHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhH-HHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccc
Confidence 33334566667999999999999999998875444 5555555 45 57777777777775543222110
Q ss_pred ---------cccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHH-------HHHHHHhhcCCChHHHHHH
Q 002971 155 ---------IFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENI-------VERVTPRLQHANCAVVLSA 218 (862)
Q Consensus 155 ---------~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~i-------l~~v~~~l~~~n~aV~~ea 218 (862)
.|--.+..+.-|+..|...+.|...+.+++|..+....+++.++. +..+...|......|.-|+
T Consensus 107 ~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRnea 186 (651)
T 3grl_A 107 EDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDG 186 (651)
T ss_dssp -CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHH
T ss_pred hHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHH
Confidence 011124567788888888899999999999888776666544432 3566778888889999999
Q ss_pred HHHHHHhhhccCChHHHHHHHH-hcccchhhcccCCh-----hHHHHHHHHHHHHHhhCh
Q 002971 219 VKMILQQMELITSTDVVRNLCK-KMAPPLVTLLSAEP-----EIQYVALRNINLIVQRRP 272 (862)
Q Consensus 219 i~~i~~~~~~~~~~~~~~~~~~-~~~~~L~~lls~~~-----~iry~aL~~l~~i~~~~p 272 (862)
+-++..+.. .+++..+-++. ++.+.|..++..+. .+.-=+|..|..|++.++
T Consensus 187 llLL~~Lt~--~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~ 244 (651)
T 3grl_A 187 VLLLQALTR--SNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNN 244 (651)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--CCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCH
Confidence 999998854 45554443332 55666777764322 333345566666666665
No 91
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.0057 Score=64.08 Aligned_cols=184 Identities=14% Similarity=0.112 Sum_probs=116.4
Q ss_pred HHhhhCCCChHHHHHHHHHHHHHHhhccccccc-------cchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCc---
Q 002971 86 LQRCLKDDDPYVRKTAAICVAKLYDINAELVED-------RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPI--- 155 (862)
Q Consensus 86 v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~-------~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~--- 155 (862)
+..-|.|+++-.|+.|+..+.+++...+..... ..+.+.+.+.+.|.|..|+..++.++..+...-+...
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 567889999999999999999999865533211 1245677889999999999999999988876432110
Q ss_pred ---ccccHHHHHHHHHH-hccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCC
Q 002971 156 ---FEITSHTLSKLLTA-LNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITS 231 (862)
Q Consensus 156 ---~~l~~~~~~~Ll~~-l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~ 231 (862)
.......+..|+.. +.+..+-.....++.+..+..... ....+++.+.+.++|.|+-|+.+++.++..++.....
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~ 172 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-SITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGL 172 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCC
Confidence 11122334455544 445555554444554443321110 1124567788899999999999999888876543211
Q ss_pred hH-HHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhh
Q 002971 232 TD-VVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQR 270 (862)
Q Consensus 232 ~~-~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~ 270 (862)
.. -.+.....+.+.+..++ ++++++|-.|...+..+...
T Consensus 173 ~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 173 TNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp TTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred CcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 10 01222233555666777 57899999999998887653
No 92
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=97.16 E-value=1.1 Score=56.82 Aligned_cols=139 Identities=9% Similarity=0.150 Sum_probs=86.7
Q ss_pred CCcccchHHHhHhc---cC--CCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC-----
Q 002971 5 KDVSSLFTDVVNCM---QT--ENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR----- 74 (862)
Q Consensus 5 ~dvs~lf~~vv~l~---~s--~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~----- 74 (862)
.++.....++.+++ .+ .+-..|+-+.-++..+.+ +|+....+...|. -.+.++.+|-.|+.+|-+..
T Consensus 4 ~~~~~~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~-~p~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~W~ 80 (1204)
T 3a6p_A 4 DQVNALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKE-KCPICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFRWN 80 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH-HCTTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred hhHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHh-CchHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhcc
Confidence 45555555555433 33 366679999999988744 4454444444443 35678999999987776431
Q ss_pred --hhhhHHHHHHHHHhhhC-------CCChHHHHHHHHHHHHHHhh-ccccccccchHHHHHHhhcCCChhHHHHHHHHH
Q 002971 75 --VDKITEYLCDPLQRCLK-------DDDPYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISDNNPMVVANAVAAL 144 (862)
Q Consensus 75 --~~~~~~~l~~~v~~~l~-------d~~~yVRk~A~~~l~kl~~~-~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l 144 (862)
.++-.+.+-..+.+.+. +..++||.+.+.++..+.+. .|+.-+ ++++.|..++.. ++...-.++.+|
T Consensus 81 ~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp--~ll~~L~~~~~~-~~~~~e~~L~iL 157 (1204)
T 3a6p_A 81 GMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWP--DMLIELDTLSKQ-GETQTELVMFIL 157 (1204)
T ss_dssp GSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCT--THHHHHHHHHHT-CHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccch--HHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 23333333333334332 15799999999999999886 465554 377778777765 444455566666
Q ss_pred HHHhh
Q 002971 145 AEIEE 149 (862)
Q Consensus 145 ~~i~~ 149 (862)
..+.+
T Consensus 158 ~~L~E 162 (1204)
T 3a6p_A 158 LRLAE 162 (1204)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 93
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.11 E-value=0.44 Score=59.54 Aligned_cols=159 Identities=9% Similarity=0.047 Sum_probs=89.1
Q ss_pred HHHHHHHhcCcCcHHHHHHHHHHhhh--hccHHHHHHHHHHHHHHHHhhhHh-HHHHHHHHHHHHhhh--------cchh
Q 002971 296 KLEIMIKLASDRNIDQVLLEFKEYAT--EVDVDFVRKAVRAIGRCAIKLERA-AERCISVLLELIKIK--------VNYV 364 (862)
Q Consensus 296 ~L~lL~~l~~~~Nv~~Iv~eL~~y~~--~~d~~~~~~~i~~I~~la~k~~~~-~~~~v~~ll~ll~~~--------~~~v 364 (862)
.|+.++.+....-+..+.+.|.+++. ..+..-+..++.++|.++...... ...++..+++.+..- ...+
T Consensus 436 ~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~ 515 (1049)
T 3m1i_C 436 VLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAV 515 (1049)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHH
Confidence 34444443332223334444445553 245667888999999888755433 223444444444321 1112
Q ss_pred HH----HHHHHHHHHHHhCcccHHHHHHHHHHhhccCCchHHHHHHHHHHhhcccccC-------------CHHHHHHHH
Q 002971 365 VQ----EAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID-------------NADELLESF 427 (862)
Q Consensus 365 ~~----e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~-------------~~~~~l~~~ 427 (862)
.. .++.+....++.+|+....++..+++.+.+ ..+.++..++|.+..+++... ..+++++.+
T Consensus 516 v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~-~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l 594 (1049)
T 3m1i_C 516 VASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHE-THEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDI 594 (1049)
T ss_dssp HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHH
Confidence 11 122233445556666666677777776653 246777778888777665432 134555555
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHhhcCCC
Q 002971 428 LESFPEEPAQVQLQLLTATVKLFLKKPT 455 (862)
Q Consensus 428 ~~~~~~e~~~v~~~iLta~~Kl~~~~~~ 455 (862)
..-+...+...+..++.|++.+....|+
T Consensus 595 ~~~~~~~~~~~~~~~~eai~~ii~~~~~ 622 (1049)
T 3m1i_C 595 QKTTADLQPQQVHTFYKACGIIISEERS 622 (1049)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHcCCC
Confidence 4444445666677888999998887763
No 94
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.0048 Score=64.70 Aligned_cols=190 Identities=11% Similarity=0.110 Sum_probs=121.5
Q ss_pred CCCCCCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcH---------HHHHHHHHHhhcCCCCHHHHhHHHHHhc
Q 002971 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDL---------AILAVNTFVKDSQDPNPLIRALAVRTMG 71 (862)
Q Consensus 1 mt~G~dvs~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el---------~~L~intl~kDl~~~n~~ir~lALr~l~ 71 (862)
|+.+.|..+-=...-.-+.|++-..|+=||-.+.......+.. ..-....++|-+.|.|..+...|+.+++
T Consensus 1 m~~~e~~d~sklpl~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~ 80 (278)
T 4ffb_C 1 MSGEEEVDYTTLPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALN 80 (278)
T ss_dssp ----------CCCHHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CCCcchhhhhcCCHHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 5555543332111335788999999999999988776543321 1123456788899999999999888876
Q ss_pred CCC------------hhhhHHHHHHHHH-hhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHH
Q 002971 72 CIR------------VDKITEYLCDPLQ-RCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVA 138 (862)
Q Consensus 72 ~i~------------~~~~~~~l~~~v~-~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~ 138 (862)
.+. ....+..+++.+. |++.|..+-+|..|..|+..+.......- .+.+.+...+...+|.|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~---~~~e~l~~~l~~Knpkv~~ 157 (278)
T 4ffb_C 81 SLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT---QSVELVIPFFEKKLPKLIA 157 (278)
T ss_dssp HHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH---HHHHHHGGGGGCSCHHHHH
T ss_pred HHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH---HHHHHHHHHHhccCHHHHH
Confidence 431 1123455555554 67999999999999999998876532211 2567788889999999998
Q ss_pred HHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHH
Q 002971 139 NAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSA 218 (862)
Q Consensus 139 ~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~ea 218 (862)
.++..|..+...-+.... ++ ......++..+..++.++|+.|.-+|
T Consensus 158 ~~l~~l~~~l~~fg~~~~-----------------~~-----------------k~~l~~i~~~l~k~l~d~~~~VR~aA 203 (278)
T 4ffb_C 158 AAANCVYELMAAFGLTNV-----------------NV-----------------QTFLPELLKHVPQLAGHGDRNVRSQT 203 (278)
T ss_dssp HHHHHHHHHHHHHTTTTC-----------------CH-----------------HHHHHHHGGGHHHHHTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcC-----------------Cc-----------------hhHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 888877765433111000 00 01122345556778899999999999
Q ss_pred HHHHHHhhh
Q 002971 219 VKMILQQME 227 (862)
Q Consensus 219 i~~i~~~~~ 227 (862)
++++..++-
T Consensus 204 ~~l~~~ly~ 212 (278)
T 4ffb_C 204 MNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999887643
No 95
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.96 E-value=0.29 Score=60.63 Aligned_cols=107 Identities=10% Similarity=0.102 Sum_probs=79.0
Q ss_pred cHHHHHHHHHHhhcCC--CCHHHHhHHHHHhcCCC---hh----hhHHHHHHHHHhhhC-----CCChHHHHHHHHHHHH
Q 002971 42 DLAILAVNTFVKDSQD--PNPLIRALAVRTMGCIR---VD----KITEYLCDPLQRCLK-----DDDPYVRKTAAICVAK 107 (862)
Q Consensus 42 el~~L~intl~kDl~~--~n~~ir~lALr~l~~i~---~~----~~~~~l~~~v~~~l~-----d~~~yVRk~A~~~l~k 107 (862)
|..-...+.+.+-+.+ .+-..|-.|+-++|+|. .+ ..++.+++.+..++. |..+.||.+++.++.+
T Consensus 447 ~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGr 526 (1023)
T 4hat_C 447 DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQ 526 (1023)
T ss_dssp HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHH
Confidence 5555566777766654 56788888888888765 22 345566777777776 4677889999999987
Q ss_pred HHh---hccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhc
Q 002971 108 LYD---INAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (862)
Q Consensus 108 l~~---~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 150 (862)
..+ .+|+.++. .++.|-+.|.|++++|..+|+.++..|++.
T Consensus 527 y~~wl~~~~~~L~~--vl~~L~~~l~~~~~~v~~~A~~al~~l~~~ 570 (1023)
T 4hat_C 527 YPRFLKAHWNFLRT--VILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1023)
T ss_dssp CHHHHHHCHHHHHH--HHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHH--HHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 544 57776653 667777778889999999999999999875
No 96
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.0066 Score=54.77 Aligned_cols=89 Identities=11% Similarity=0.079 Sum_probs=60.2
Q ss_pred CCceEEEEEEEeeC-CeeEEEEEEEecCCCCcccceeeecccccCcccCCCCC-CCcCCCC--CeeeEEEeeeecCCCCC
Q 002971 644 GQGLQIGAELTRQD-GQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQ-VPQLQPG--TSGRTLLPMVLFQNMSA 719 (862)
Q Consensus 644 ~~gL~I~~~~~~~~-~~~~l~l~~~N~s~~~it~f~~q~~~n~~gl~~~~~~~-~~~l~pg--~~~~~~i~i~~~~~~~~ 719 (862)
.+||+|.+.+.+.+ +.+.+.++|+|++..++++|.+|+..+. +++..-.++ -..|+|+ ..++|.+.|.-......
T Consensus 16 ~~~l~I~~~~~~~~~~~~~i~~~fsN~s~~~it~f~fqaAVPK-s~kL~L~p~Sg~~L~p~~~~~itQ~~~I~n~~~~~~ 94 (123)
T 3mnm_A 16 SPNLKIEFEISRESNSVIRIXSFFTNLSSSPISNLVFLLAVPK-SMSLXLQPQSSNFMIGNAKDGISQEGTIENAPANPS 94 (123)
T ss_dssp CSSEEEEEEEEECSSSCEEEEEEEEECSSSCEEEEEEEEECCT-TSEEEECCCSCSCBCTTCTTCEEEEEEEESCCCC--
T ss_pred CCCEEEEEEEEeCCCCeEEEEEEEecCCCCccccEEEEEecCc-ccEEEeECCCcCccCCCCCCCEEEEEEEecCCCCCC
Confidence 58899999999975 4578999999999999999999998653 444433333 3478887 56778777742211112
Q ss_pred CCCCcceEEEEecC
Q 002971 720 GPPSSLLQVAVKNN 733 (862)
Q Consensus 720 ~~~~~~l~~~~k~~ 733 (862)
.+..+++++.|+-+
T Consensus 95 ~~lklR~klsY~~~ 108 (123)
T 3mnm_A 95 KALXVKWKVNYSVN 108 (123)
T ss_dssp -CCEEEEEEEEEET
T ss_pred CCEEEEEEEEEEEC
Confidence 24345666666543
No 97
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.92 E-value=0.51 Score=58.27 Aligned_cols=416 Identities=13% Similarity=0.104 Sum_probs=203.8
Q ss_pred CCHHHHhHHHHHhcCCC-hhhhHHHHHHHHHhhhCCC---ChHHHHHHHHHHHHHHhhcccc-c--cccchHHHHHHhhc
Q 002971 58 PNPLIRALAVRTMGCIR-VDKITEYLCDPLQRCLKDD---DPYVRKTAAICVAKLYDINAEL-V--EDRGFLESLKDLIS 130 (862)
Q Consensus 58 ~n~~ir~lALr~l~~i~-~~~~~~~l~~~v~~~l~d~---~~yVRk~A~~~l~kl~~~~p~~-~--~~~~~~~~l~~lL~ 130 (862)
+++..|.-|...|..+. .|+-... ...++.++ ++.||=-|+..+-...+.-|+. . ....+-+.|..++.
T Consensus 20 sd~~~r~~A~~~L~~~q~sp~aw~~----~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l~ 95 (980)
T 3ibv_A 20 VGPIIKQQATDFIGSLRSSSTGWKI----CHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIK 95 (980)
T ss_dssp SCHHHHHHHHHHHHHHHHSTTHHHH----HHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcChhHHHH----HHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHH
Confidence 37888999999988876 3444443 33444442 7999999999988776632222 0 11123444544443
Q ss_pred C-----CChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCCh-hHHHHHHHHHhhcc--------cccHHH-
Q 002971 131 D-----NNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTE-WGQVFILDALSRYK--------AADARE- 195 (862)
Q Consensus 131 d-----~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~-w~q~~iL~~L~~~~--------~~~~~~- 195 (862)
. ..+.|......++.+|..+..+..|.- .+..|+..+...++ .....+|++|.... +.+.+.
T Consensus 96 ~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~---~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~ 172 (980)
T 3ibv_A 96 ELSFLDEPAYISNAVQHLLTLLFLQLYPSNWND---FFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQI 172 (980)
T ss_dssp HCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTT---HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHH
T ss_pred HhcCCCCcHHHHHHHHHHHHHHHHHhCcccCch---HHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHH
Confidence 2 345566666667777777654444442 34555555543333 56666777776221 111110
Q ss_pred --------------HHHHHHHHHHhh----cCCChHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhcccCChhHH
Q 002971 196 --------------AENIVERVTPRL----QHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQ 257 (862)
Q Consensus 196 --------------~~~il~~v~~~l----~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~lls~~~~ir 257 (862)
...+.+.+...+ .+.++.++-.+.+++..|..-+ +...+-. ..+.+.+..+++ ++++|
T Consensus 173 ~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi-~~~~i~~--~~ll~~l~~~L~-~~~~r 248 (980)
T 3ibv_A 173 QKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWI-NINLIVN--EPCMNLLYSFLQ-IEELR 248 (980)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS-CHHHHHC--HHHHHHHHHHTT-SHHHH
T ss_pred hhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhc-CHHhhhc--chHHHHHHHHcC-ChHHH
Confidence 111223333333 3467777777777777765433 2222210 123333444554 48999
Q ss_pred HHHHHHHHHHHhhChh------hhh-----ccceEEEecCCCcHHHHHHHHHHHHHhc-------Cc-------------
Q 002971 258 YVALRNINLIVQRRPT------ILA-----HEIKVFFCKYNDPIYVKMEKLEIMIKLA-------SD------------- 306 (862)
Q Consensus 258 y~aL~~l~~i~~~~p~------~~~-----~~~~~~~~l~~d~~~Ik~~~L~lL~~l~-------~~------------- 306 (862)
-.|+++|..|+.+..+ ++. +.+... ...++|..+.+.--+++..++ +.
T Consensus 249 ~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l-~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~ 327 (980)
T 3ibv_A 249 CAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKS-QEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCS 327 (980)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHH-hcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHH
Confidence 9999999999987532 111 111110 111345443322222332221 11
Q ss_pred CcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhh---------hHhHHHHHHHHHHHHhhh----cc-----------
Q 002971 307 RNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKL---------ERAAERCISVLLELIKIK----VN----------- 362 (862)
Q Consensus 307 ~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~---------~~~~~~~v~~ll~ll~~~----~~----------- 362 (862)
..+..+++-++.+....|.++...++.-...+.... ......++..|++.+-.+ .+
T Consensus 328 ~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed 407 (980)
T 3ibv_A 328 FQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEE 407 (980)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSST
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhH
Confidence 234456666667776666666554443333333211 111223333333332211 10
Q ss_pred -----hhHHHHHHHHHHHHH-hCcccHHH----HHHHHH-HhhccC--CchHHHHHHHHHHhhcccccCC----------
Q 002971 363 -----YVVQEAIIVIKDIFR-RYPNTYES----IIATLC-ESLDTL--DEPEAKASMIWIIGEYAERIDN---------- 419 (862)
Q Consensus 363 -----~v~~e~i~~l~~i~~-~~p~~~~~----~i~~L~-~~l~~~--~~~~~~~~~~wilGEy~~~i~~---------- 419 (862)
..+.++- .+.+.+. -.|+..-. .+..++ +.+..- ...+-.++.++.+|-+|+-+.+
T Consensus 408 ~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~ 486 (980)
T 3ibv_A 408 EAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDK 486 (980)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSC
T ss_pred HHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccc
Confidence 0111111 2222222 23443222 222221 122100 1233467777777777665542
Q ss_pred -HHHHHHHHhhh----CC-CCCHHHHHHHHHHHHHHhh---cCCCCChHHHHHHHHHhcccCCCChHHHHHHHHHHH
Q 002971 420 -ADELLESFLES----FP-EEPAQVQLQLLTATVKLFL---KKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWR 487 (862)
Q Consensus 420 -~~~~l~~~~~~----~~-~e~~~v~~~iLta~~Kl~~---~~~~~~~~~~i~~~l~~~~~~s~~~dvrdRA~~y~~ 487 (862)
.+.+++.+..- +. ..++.||.....++++... ..|+- ..+.+..++....-.+.+..||-||....+
T Consensus 487 ~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~-l~~~L~~ll~~~gl~~~~~~V~~~a~~af~ 562 (980)
T 3ibv_A 487 SPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAA-IPALIEYFVGPRGIHNTNERVRPRAWYLFY 562 (980)
T ss_dssp CBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTT-HHHHHHHHTSTTTTTCCCTTTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchh-HHHHHHHHhccccccCCChhHHHHHHHHHH
Confidence 22444433322 22 5679999988888877543 44532 455566665511123467889999876543
No 98
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2
Probab=96.73 E-value=0.0083 Score=55.87 Aligned_cols=86 Identities=9% Similarity=0.060 Sum_probs=58.9
Q ss_pred CCceEEEEEEEee---CCeeEEEEEEEecCCCCcccceeeecccccCcccCCCCC-CCcCCCC--CeeeEEEeeeecCCC
Q 002971 644 GQGLQIGAELTRQ---DGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQ-VPQLQPG--TSGRTLLPMVLFQNM 717 (862)
Q Consensus 644 ~~gL~I~~~~~~~---~~~~~l~l~~~N~s~~~it~f~~q~~~n~~gl~~~~~~~-~~~l~pg--~~~~~~i~i~~~~~~ 717 (862)
.+||+|.+.+.|. ++.+.+.++|+|++..++++|.+|+..+. +++.+-.++ -..|+|+ ..++|.+.|.-. .
T Consensus 36 ~~~l~I~f~~~r~~~~~~~~~i~~~f~N~s~~~it~f~fQaAVPK-~~kLqL~ppSg~~L~p~~~~~ItQ~~~I~n~--~ 112 (146)
T 1iu1_A 36 KNGLKIEFTFERSNTNPSVTVITIQASNSTELDMTDFVFQAAVPK-TFQLQLLSPSSSIVPAFNTGTITQVIKVLNP--Q 112 (146)
T ss_dssp ETTEEEEEEEEECSSCTTEEEEEEEEEECSSSCBEEEEEEEECCT-TSEEEECCCSCSCBCGGGCCCEEEEEEEECT--T
T ss_pred cCCEEEEEEEEcCCCCCCEEEEEEEEEeCCCCccccEEEEEEcCc-ccEEEeeCCCCCccCCCCCCCEEEEEEEeCC--C
Confidence 5789999999985 35678999999999999999999998653 444444433 3478774 346777766432 1
Q ss_pred CCCCCCcceEEEEecC
Q 002971 718 SAGPPSSLLQVAVKNN 733 (862)
Q Consensus 718 ~~~~~~~~l~~~~k~~ 733 (862)
..+..+++++.|+-+
T Consensus 113 -~~~lklR~klsY~~~ 127 (146)
T 1iu1_A 113 -KQQLRMRIKLTYNHK 127 (146)
T ss_dssp -CCCCCCEEEEEEEET
T ss_pred -CCCEEEEEEEEEEEC
Confidence 123445666666544
No 99
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=96.70 E-value=0.0079 Score=54.26 Aligned_cols=86 Identities=10% Similarity=0.110 Sum_probs=60.8
Q ss_pred CCceEEEEEEEeeC---CeeEEEEEEEecCCCCcccceeeecccccCcccCCCCCC-CcCCC--CCeeeEEEeeeecCCC
Q 002971 644 GQGLQIGAELTRQD---GQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQV-PQLQP--GTSGRTLLPMVLFQNM 717 (862)
Q Consensus 644 ~~gL~I~~~~~~~~---~~~~l~l~~~N~s~~~it~f~~q~~~n~~gl~~~~~~~~-~~l~p--g~~~~~~i~i~~~~~~ 717 (862)
.+||+|.+.+.|.+ +.+.+.++|+|++..+|++|.+|+..+. +++.+-.++. ..|+| +..++|.+.|. ++.
T Consensus 12 ~~~l~I~~~~~~~~~~~~~~~i~~~~~N~s~~~it~f~fqaAVPK-s~kL~L~p~Sg~~l~p~~~~~itQ~l~i~--n~~ 88 (122)
T 3zy7_A 12 ALGLKIEFTFERSNTNPSVTVITIQASNSTELDMTDFVFQAAVPK-TFQLQLLSPSSSVVPAFNTGTITQVIKVL--NPQ 88 (122)
T ss_dssp ETTEEEEEEEECC----CEEEEEEEEEECSSSCBEEEEEEEECCT-TSEEEECCCSCSCBCGGGSCCEEEEEEEE--CTT
T ss_pred CCCEEEEEEEEcCCCCCCeEEEEEEEEECCCCccccEEEEEEcCc-ccEEEecCCCCCccCCCCCCCEEEEEEEE--CCC
Confidence 58899999999963 4689999999999999999999998653 3433333333 47888 77788888775 222
Q ss_pred CCCCCCcceEEEEecC
Q 002971 718 SAGPPSSLLQVAVKNN 733 (862)
Q Consensus 718 ~~~~~~~~l~~~~k~~ 733 (862)
..+..+++++.|+-+
T Consensus 89 -~~~lklR~klsY~~~ 103 (122)
T 3zy7_A 89 -KQQLRMRIKLTFNWN 103 (122)
T ss_dssp -CCCCCEEEEEEEEET
T ss_pred -CCCEEEEEEEEEEEC
Confidence 224345666666543
No 100
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.50 E-value=0.24 Score=50.61 Aligned_cols=85 Identities=16% Similarity=0.243 Sum_probs=72.4
Q ss_pred HHHhHHHHHhcC---CChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHH
Q 002971 61 LIRALAVRTMGC---IRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVV 137 (862)
Q Consensus 61 ~ir~lALr~l~~---i~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~ 137 (862)
..+...|+-+-. -..|++.+.+++.+.....|++..|||-.+--+...++.++++... .++.|..+|+|.|+.|+
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~--~l~~L~~Ll~d~d~~V~ 107 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPH--VINVVSMLLRDNSAQVI 107 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHH--HHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHcCCCHHHH
Confidence 366666665544 2478899999999999999999999999999999999999999875 88999999999999999
Q ss_pred HHHHHHHHHH
Q 002971 138 ANAVAALAEI 147 (862)
Q Consensus 138 ~~a~~~l~~i 147 (862)
-.++.+...+
T Consensus 108 K~~I~~~~~i 117 (257)
T 3gs3_A 108 KRVIQACGSI 117 (257)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877766
No 101
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.33 E-value=0.021 Score=52.18 Aligned_cols=86 Identities=12% Similarity=0.133 Sum_probs=58.3
Q ss_pred CCceEEEEEEEee---CCeeEEEEEEEecCCCCcccceeeecccccCcccCCCCC-CCcCCCCCe--eeEEEeeeecCCC
Q 002971 644 GQGLQIGAELTRQ---DGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQ-VPQLQPGTS--GRTLLPMVLFQNM 717 (862)
Q Consensus 644 ~~gL~I~~~~~~~---~~~~~l~l~~~N~s~~~it~f~~q~~~n~~gl~~~~~~~-~~~l~pg~~--~~~~i~i~~~~~~ 717 (862)
.+||+|.+.+.+. ++.+.+.++|+|++..+|++|.+|+..+. +++.+-.++ -..|+|++. ++|.+.|. ++
T Consensus 21 ~~~l~I~f~~~~~~~~~~~~~i~~~~~N~s~~~it~f~fQaAVPK-~~kLqL~p~Sg~~l~p~~~~~ItQ~~~i~--n~- 96 (131)
T 2e9g_A 21 REGVQLNLSFIRPPENPALLLITITATNFSEGDVTHFICQAAVPK-SLQLQLQAPSGNTVPARGGLPITQLFRIL--NP- 96 (131)
T ss_dssp CSSEEEEEEEECCSSCTTEEEEEEEEEECSSSCEEEEEEEEECCT-TSCCEECCCSCSEECTTTCCCBCCCEEEE--CT-
T ss_pred cCCEEEEEEEEcCCCCCCeEEEEEEEEECCCCccccEEEEEEcCc-ccEEEeeCCCCCCcCCCCCCCEEEEEEEe--CC-
Confidence 5789999999984 35689999999999999999999998653 444443333 347887543 56666653 22
Q ss_pred CCCCCCcceEEEEecC
Q 002971 718 SAGPPSSLLQVAVKNN 733 (862)
Q Consensus 718 ~~~~~~~~l~~~~k~~ 733 (862)
...+..+++++.|+-+
T Consensus 97 ~~~~l~lR~klsY~~~ 112 (131)
T 2e9g_A 97 NKAPLRLKLRLTYDHF 112 (131)
T ss_dssp TCCCCCEEEEEEEECS
T ss_pred CCCCEEEEEEEEEEEC
Confidence 1223345566666544
No 102
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=96.02 E-value=0.035 Score=51.18 Aligned_cols=86 Identities=9% Similarity=0.073 Sum_probs=58.6
Q ss_pred CCceEEEEEEEee---CCeeEEEEEEEecCCCCcccceeeecccccCcccCCCCC-CCcCCCC--CeeeEEEeeeecCCC
Q 002971 644 GQGLQIGAELTRQ---DGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQ-VPQLQPG--TSGRTLLPMVLFQNM 717 (862)
Q Consensus 644 ~~gL~I~~~~~~~---~~~~~l~l~~~N~s~~~it~f~~q~~~n~~gl~~~~~~~-~~~l~pg--~~~~~~i~i~~~~~~ 717 (862)
.+||+|.+.+.+. ++.+.+.++|+|++..+|++|.+|+..+. +++.+-.++ -..|+|+ ..++|.+.|.- +.
T Consensus 30 ~n~L~I~f~~~r~~~~~~~~~i~~~f~N~s~~~it~f~fQaAVPK-s~kLqL~ppSg~~L~p~~~~~ItQ~m~I~n--~~ 106 (140)
T 1gyu_A 30 KNGLKIEFTFERSNTNPSVTVITIQASNSTELDMTDFVFQAAVPK-TFQLQLLSPSSSVVPAFNTGTITQVIKVLN--PQ 106 (140)
T ss_dssp ETTEEEEEEEEECSSCTTEEEEEEEEEECSSSCBEEEEEEEECCT-TCEEEECCCSCSCBCGGGCCCEEEEEEEEC--TT
T ss_pred cCCEEEEEEEEcCCCCCCEEEEEEEEEECCCCccccEEEEEEcCc-ccEEEeeCCCCCccCCCCCCCEEEEEEEeC--CC
Confidence 5789999999985 35689999999999999999999998653 444444433 3478874 34677776643 21
Q ss_pred CCCCCCcceEEEEecC
Q 002971 718 SAGPPSSLLQVAVKNN 733 (862)
Q Consensus 718 ~~~~~~~~l~~~~k~~ 733 (862)
..+..+++++.|+-+
T Consensus 107 -~~~l~LR~klsY~~~ 121 (140)
T 1gyu_A 107 -KQQLRMRIKLTYNHK 121 (140)
T ss_dssp -CCCCCEEEEEEEEET
T ss_pred -CCCEEEEEEEEEEEC
Confidence 123345566666543
No 103
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.65 E-value=0.2 Score=51.38 Aligned_cols=185 Identities=12% Similarity=0.041 Sum_probs=117.8
Q ss_pred hHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHH----HhhcCCChhHHHHHHHHHHHHhhcCCC
Q 002971 78 ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK----DLISDNNPMVVANAVAALAEIEENSSR 153 (862)
Q Consensus 78 ~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~----~lL~d~d~~V~~~a~~~l~~i~~~~~~ 153 (862)
+..++-+++...+.+++.--|-+|+-.+.+....+|+.+.. .++.+. -.+.|+|+.|...++-+|..+...-..
T Consensus 43 ~~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~ 120 (266)
T 2of3_A 43 LGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRD 120 (266)
T ss_dssp HHTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 33444556778888889888888988888888777765432 233333 345699999999888888776432101
Q ss_pred Cccccc----HHHHHHHHHHhccCChhHHHH---HHHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhh
Q 002971 154 PIFEIT----SHTLSKLLTALNECTEWGQVF---ILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQM 226 (862)
Q Consensus 154 ~~~~l~----~~~~~~Ll~~l~~~~~w~q~~---iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~ 226 (862)
..+.+. ...++.|+..+-+..+=..-. +++.+....| ...+.+.+...++|.|+=+.-||+..+..+.
T Consensus 121 ~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-----~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li 195 (266)
T 2of3_A 121 TETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-----PLKMTPMLLDALKSKNARQRSECLLVIEYYI 195 (266)
T ss_dssp TTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-----HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 101121 245677788877765443333 3333333222 2356677778889999988999988888775
Q ss_pred hccCChHHHHHHHHhcc---cchhhcc-cCChhHHHHHHHHHHHHHhhChhhh
Q 002971 227 ELITSTDVVRNLCKKMA---PPLVTLL-SAEPEIQYVALRNINLIVQRRPTIL 275 (862)
Q Consensus 227 ~~~~~~~~~~~~~~~~~---~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~~~ 275 (862)
+....+. .+.. +.+..++ .+++++|-.|+.++..+-..-++-+
T Consensus 196 ~~~G~~~------~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v 242 (266)
T 2of3_A 196 TNAGISP------LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM 242 (266)
T ss_dssp HHHCSGG------GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HhcCCCc------cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 4332221 1344 5567777 4788999999999987766544433
No 104
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.62 E-value=1.2 Score=49.07 Aligned_cols=148 Identities=13% Similarity=0.122 Sum_probs=91.0
Q ss_pred cCChhHHHHHHHHHHHHHhhChhhhhccce-EEEecCCCcHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhhhhccHHHHH
Q 002971 251 SAEPEIQYVALRNINLIVQRRPTILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVR 329 (862)
Q Consensus 251 s~~~~iry~aL~~l~~i~~~~p~~~~~~~~-~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~ 329 (862)
++++..+-+|-+.|.+..+.+|++-..-+. .+.+..++|..||..|+.-|..+|..+++..|.+-|.+.+...|..=..
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlLqtdd~~E~~ 118 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLLQTDDSAEFN 118 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHTTCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHHhccchHHHH
Confidence 345667777777777777777766544333 3334457889999999999999999999999999999988865543222
Q ss_pred HHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhC------cccHHHHHHHHHHhhccCCchH
Q 002971 330 KAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRY------PNTYESIIATLCESLDTLDEPE 401 (862)
Q Consensus 330 ~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~------p~~~~~~i~~L~~~l~~~~~~~ 401 (862)
.+=.++-.+ +..+....+..++.-+..+.+.+...++..|+.-+..- .+..+.++..+.+.|+++...+
T Consensus 119 ~V~~sL~sl---lk~Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~E 193 (507)
T 3u0r_A 119 LVNNALLSI---FKMDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEE 193 (507)
T ss_dssp HHHHHHHHH---HHHCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHH
T ss_pred HHHHHHHHH---HhcChHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccHHH
Confidence 222222222 22334455566666666655566666666665544431 2334445555555555554333
No 105
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=95.54 E-value=0.099 Score=52.86 Aligned_cols=105 Identities=10% Similarity=0.020 Sum_probs=80.0
Q ss_pred HHHHHHHhhcCCCCH--HHHhHHHHHhcCCC--hhh----hHH-HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccc--
Q 002971 46 LAVNTFVKDSQDPNP--LIRALAVRTMGCIR--VDK----ITE-YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE-- 114 (862)
Q Consensus 46 L~intl~kDl~~~n~--~ir~lALr~l~~i~--~~~----~~~-~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~-- 114 (862)
|.+..+.+-|.++++ .++..|..++.++. .++ +++ -.+|.+.++|.+.++.|++.|+.++..+...+++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 445667777888777 77776766666654 122 222 2468999999999999999999999999865553
Q ss_pred -cccccchHHHHHHhhc-CCChhHHHHHHHHHHHHhhc
Q 002971 115 -LVEDRGFLESLKDLIS-DNNPMVVANAVAALAEIEEN 150 (862)
Q Consensus 115 -~~~~~~~~~~l~~lL~-d~d~~V~~~a~~~l~~i~~~ 150 (862)
.+.+.+-++.|.++|. ..+..+.-+|+.+|..+...
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~ 125 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC
Confidence 4455688999999997 47899999999999998754
No 106
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.54 E-value=0.54 Score=57.25 Aligned_cols=219 Identities=16% Similarity=0.197 Sum_probs=158.4
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHH---hcCCChhhhHHHHHHHHHhhhCCC-ChHHHHHHHHHHHHHHhhccccccc--cc
Q 002971 47 AVNTFVKDSQDPNPLIRALAVRT---MGCIRVDKITEYLCDPLQRCLKDD-DPYVRKTAAICVAKLYDINAELVED--RG 120 (862)
Q Consensus 47 ~intl~kDl~~~n~~ir~lALr~---l~~i~~~~~~~~l~~~v~~~l~d~-~~yVRk~A~~~l~kl~~~~p~~~~~--~~ 120 (862)
..+.+..-+.|++..+|..|-.+ +....+++-+..+.|.+...+.++ .+-.+-.|+-++-++....|+.+.. .+
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~ 175 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPE 175 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccc
Confidence 45677777889999999876554 444457777789999999999765 6888888888888999888876542 24
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhh--cccc-cHHHHH
Q 002971 121 FLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSR--YKAA-DAREAE 197 (862)
Q Consensus 121 ~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~--~~~~-~~~~~~ 197 (862)
++|.+.+++-|.-+.|..+|..++..+|.--.. .++ .+.+..|++++.++++ .-..+..|.. |... +.....
T Consensus 176 ~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n--~d~-~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~ 250 (986)
T 2iw3_A 176 LIPVLSETMWDTKKEVKAAATAAMTKATETVDN--KDI-ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLS 250 (986)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCC--TTT-GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHH
T ss_pred hhcchHhhcccCcHHHHHHHHHHHHHHHhcCCC--cch-hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHH
Confidence 788889999999999999999999988864211 122 2457888888888766 3344555542 2211 222333
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhccc--CChhHHHHHHHHHHHHHhh
Q 002971 198 NIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS--AEPEIQYVALRNINLIVQR 270 (862)
Q Consensus 198 ~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~lls--~~~~iry~aL~~l~~i~~~ 270 (862)
-+...+...|+.+..++-..++-++-++...+.+|.....+..++.|.+-+... ++||.|-++-+++..|...
T Consensus 251 ~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 251 IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 344555566777888888888888888777788888777776677766666553 6999999998888877653
No 107
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.51 E-value=0.31 Score=48.66 Aligned_cols=136 Identities=15% Similarity=0.117 Sum_probs=98.7
Q ss_pred HhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHh-hhCCCChHHHHHHHHHHHHHHh-hccccccccchHHHHHHhh
Q 002971 52 VKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQR-CLKDDDPYVRKTAAICVAKLYD-INAELVEDRGFLESLKDLI 129 (862)
Q Consensus 52 ~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~-~l~d~~~yVRk~A~~~l~kl~~-~~p~~~~~~~~~~~l~~lL 129 (862)
+.=.+|+...+|++|...++.. . . .+.+.+.++. ...|.+..||-.++.++.++.. .+|+. .++.+...+
T Consensus 77 ~~L~~~~~deVR~~Av~lLg~~-~-~-~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-----~l~~~~~W~ 148 (240)
T 3l9t_A 77 FLAYQSDVYQVRMYAVFLFGYL-S-K-DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-----ALPIIDEWL 148 (240)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHT-T-T-SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-----THHHHHHHH
T ss_pred HHHHhCcchHHHHHHHHHHHhc-c-C-cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-----HHHHHHHHh
Confidence 3444667789999999999988 3 2 3677888887 7789999999999999999996 88884 446788899
Q ss_pred cCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHh-ccCChhHHHHHHHHHhhcccccHHHHHH
Q 002971 130 SDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTAL-NECTEWGQVFILDALSRYKAADAREAEN 198 (862)
Q Consensus 130 ~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~w~q~~iL~~L~~~~~~~~~~~~~ 198 (862)
.|.|+-|...|+-.+.--+.. + .+...+..+-.++..+ .+.+.+.|-.+=.-|..|.+.+++-...
T Consensus 149 ~d~n~~VRR~Ase~~rpW~~~-~--~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~ 215 (240)
T 3l9t_A 149 KSSNLHTRRAATEGLRIWTNR-P--YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKI 215 (240)
T ss_dssp HCSSHHHHHHHHHHTCSGGGS-T--TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCCHHHHHHHHHhhHHHhcc-c--hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHH
Confidence 999999998876554321211 1 1233444444455544 5678888888888888888888765443
No 108
>1p4u_A ADP-ribosylation factor binding protein GGA3; protein transport; 2.20A {Homo sapiens} SCOP: b.1.10.2 PDB: 1om9_A 1na8_A 2dwy_A 2dwx_A
Probab=95.48 E-value=0.061 Score=50.37 Aligned_cols=86 Identities=8% Similarity=0.062 Sum_probs=57.2
Q ss_pred CCceEEEEEEEee-----CCeeEEEEEEEecCCCCcccceeeecccccCcccCCCCC-CCcCCCCC------eeeEEEee
Q 002971 644 GQGLQIGAELTRQ-----DGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQ-VPQLQPGT------SGRTLLPM 711 (862)
Q Consensus 644 ~~gL~I~~~~~~~-----~~~~~l~l~~~N~s~~~it~f~~q~~~n~~gl~~~~~~~-~~~l~pg~------~~~~~i~i 711 (862)
.+||+|.+.+.+. ++...+.+.|+|++..++++|.+|+..+. +++.+-.++ -..|+|++ .++|.+.|
T Consensus 34 ~n~l~I~f~~~~~~~p~~~~~~~i~~~~~N~s~~~is~f~fQaAVPK-~~kLqL~ppSg~~L~p~~~~~~~~~ItQ~m~v 112 (153)
T 1p4u_A 34 KNGFRILFHFAKECPPGRPDVLVVVVSMLNMAPLPVKSIVLQAAAPK-SMKVKLQPPSGTELSPFSPIQPPAAITQVMLL 112 (153)
T ss_dssp ETTEEEEEEEBSSCCTTCTTEEEEEEEEEECSSSCBEEEEEEEECBT-TSEEEECCCSCSCBCCCBTTBCCCEEEEEEEE
T ss_pred cCCEEEEEEEEecCCCCCCCeEEEEEEEEeCCCCccccEEEEEEcCc-ccEEEeeCCCCCccCCCCcCCCCCCEEEEEEE
Confidence 4789999999984 23567899999999999999999998653 444433333 33676654 36777766
Q ss_pred eecCCCCCCCCCcceEEEEecC
Q 002971 712 VLFQNMSAGPPSSLLQVAVKNN 733 (862)
Q Consensus 712 ~~~~~~~~~~~~~~l~~~~k~~ 733 (862)
.- + ...+..+++++.|+-+
T Consensus 113 ~n--~-~~~~l~LR~klsY~~~ 131 (153)
T 1p4u_A 113 AN--P-LKEKVRLRYKLTFALG 131 (153)
T ss_dssp EC--T-TCCCCCEEEEEEEEET
T ss_pred eC--C-CCCCEEEEEEEEEEEC
Confidence 43 2 1234445566666543
No 109
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=95.38 E-value=4.3 Score=44.86 Aligned_cols=125 Identities=14% Similarity=0.090 Sum_probs=76.9
Q ss_pred ccHHHHHHHHHHHHHHHHhhh--HhHHHHHHHHH-HHHhhhcchhHHHHHH-HHHHHHHhCcccHHHHHHHHHHhhcc--
Q 002971 323 VDVDFVRKAVRAIGRCAIKLE--RAAERCISVLL-ELIKIKVNYVVQEAII-VIKDIFRRYPNTYESIIATLCESLDT-- 396 (862)
Q Consensus 323 ~d~~~~~~~i~~I~~la~k~~--~~~~~~v~~ll-~ll~~~~~~v~~e~i~-~l~~i~~~~p~~~~~~i~~L~~~l~~-- 396 (862)
.|.|+..++-.--..+.+.+. +..+.|..-+. ..|+-+..|-.+.-|. ...++ .+-.-.++..|++.|++
T Consensus 333 ~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf----~e~~~~llk~L~~iL~~~~ 408 (480)
T 1ho8_A 333 SDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEF----KKDNYKIFRQLIELLQAKV 408 (480)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGG----SSGGGHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHH----HhcchHHHHHHHHHHhhhc
Confidence 577777665444444444332 23445544332 3333344555555565 22222 22223567788887763
Q ss_pred -------CCchHHHHHHHHHHhhcccccCCHHHHHHHH------hhhCCCCCHHHHHHHHHHHHHHhh
Q 002971 397 -------LDEPEAKASMIWIIGEYAERIDNADELLESF------LESFPEEPAQVQLQLLTATVKLFL 451 (862)
Q Consensus 397 -------~~~~~~~~~~~wilGEy~~~i~~~~~~l~~~------~~~~~~e~~~v~~~iLta~~Kl~~ 451 (862)
-.+|...+.+++=||||..+.++...+++.+ .+-...++++||...|.|+-|+..
T Consensus 409 ~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 409 RNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 2357778999999999999988877666543 334556789999999988888754
No 110
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=95.29 E-value=8.3 Score=47.64 Aligned_cols=161 Identities=11% Similarity=0.062 Sum_probs=95.9
Q ss_pred HHHHHHHHhcCcCcHHHHHHHHHHhhhh--ccHHHHHHHHHHHHHHHHhhhHh-----HHHHHHHHHHHHhhhc-----c
Q 002971 295 EKLEIMIKLASDRNIDQVLLEFKEYATE--VDVDFVRKAVRAIGRCAIKLERA-----AERCISVLLELIKIKV-----N 362 (862)
Q Consensus 295 ~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~--~d~~~~~~~i~~I~~la~k~~~~-----~~~~v~~ll~ll~~~~-----~ 362 (862)
..|..++.+...+-++.+++.|.+.+.. .+-..++.++.++|.++....+. ....+..|+.+...+. .
T Consensus 435 d~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~ 514 (1023)
T 4hat_C 435 EVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKA 514 (1023)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchH
Confidence 5555666665555555566666666543 57788999999999988765432 2245666666665311 1
Q ss_pred hhHHHH---HHHHHHHHHhCcccHHHHHHHHHHhhccCCchHHHHHHHHHHhhcccccC-------------CHHHHHHH
Q 002971 363 YVVQEA---IIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID-------------NADELLES 426 (862)
Q Consensus 363 ~v~~e~---i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~-------------~~~~~l~~ 426 (862)
.+.+.+ +.+..+.+..+|+.-..++..|++.+.+ ..|.+..+++|-+-..++.+. ....+++.
T Consensus 515 ~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~-~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~ 593 (1023)
T 4hat_C 515 VVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHE-THEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRD 593 (1023)
T ss_dssp HHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHH
Confidence 122222 1233445566676666777777776632 246666666676655443321 12344444
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHhhcCCCC
Q 002971 427 FLESFPEEPAQVQLQLLTATVKLFLKKPTE 456 (862)
Q Consensus 427 ~~~~~~~e~~~v~~~iLta~~Kl~~~~~~~ 456 (862)
+...+..-+..-+..+..|++.+....|.+
T Consensus 594 l~~~~~~l~~~~~~~lyeai~~vi~~~~~~ 623 (1023)
T 4hat_C 594 IQKTTADLQPQQVHTFYKACGIIISEERSV 623 (1023)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHTTCCSH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCCH
Confidence 444444456777788889999998887753
No 111
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.26 E-value=5.3 Score=48.62 Aligned_cols=252 Identities=17% Similarity=0.213 Sum_probs=147.2
Q ss_pred cCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccc--cccc--cchHHHHHHhhcCCChhHHHHHHHHHHH
Q 002971 71 GCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE--LVED--RGFLESLKDLISDNNPMVVANAVAALAE 146 (862)
Q Consensus 71 ~~i~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~--~~~~--~~~~~~l~~lL~d~d~~V~~~a~~~l~~ 146 (862)
+.+....+...+...+++.+.++..- -.|+.++..+++..+- -++. -.+++.+.+++.|++..|..+|-.+...
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~ 121 (986)
T 2iw3_A 44 GNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLIS 121 (986)
T ss_dssp SSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 33333333346788889999985443 7888888888866532 1111 0245777788889999998888888888
Q ss_pred HhhcCCCCcccccHHHHHHHHHHhccCChh-HHHHHHHHHhhcccccHHHHH----HHHHHHHHhhcCCChHHHHHHHHH
Q 002971 147 IEENSSRPIFEITSHTLSKLLTALNECTEW-GQVFILDALSRYKAADAREAE----NIVERVTPRLQHANCAVVLSAVKM 221 (862)
Q Consensus 147 i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w-~q~~iL~~L~~~~~~~~~~~~----~il~~v~~~l~~~n~aV~~eai~~ 221 (862)
|...-+.. . .+..++.|++.+....-| .++-.|+++..+....++... +++..+...+...-+-|--.|.++
T Consensus 122 ~~~~~~~~--a-~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~ 198 (986)
T 2iw3_A 122 IVNAVNPV--A-IKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAA 198 (986)
T ss_dssp HHHHSCGG--G-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHhCCHH--H-HHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHH
Confidence 77654332 1 245677777877666678 567778888777654444333 445555556666667777777777
Q ss_pred HHHhhhccCChHHHHHHHHhcccchhhcccCChhHHHHHHHHHHHHHhhC-------hh--hhhccceEEEecCCCcHHH
Q 002971 222 ILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRR-------PT--ILAHEIKVFFCKYNDPIYV 292 (862)
Q Consensus 222 i~~~~~~~~~~~~~~~~~~~~~~~L~~lls~~~~iry~aL~~l~~i~~~~-------p~--~~~~~~~~~~~l~~d~~~I 292 (862)
+..+...+.+.+.. ..++.|+..+.+..+ +=.++..|.... |. ++.+-+ ...+.+....+
T Consensus 199 ~~~~~~~~~n~d~~-----~~~~~~~~~~~~p~~----~~~~~~~l~~~tfv~~v~~~~l~~~~p~l--~r~l~~~~~~~ 267 (986)
T 2iw3_A 199 MTKATETVDNKDIE-----RFIPSLIQCIADPTE----VPETVHLLGATTFVAEVTPATLSIMVPLL--SRGLNERETGI 267 (986)
T ss_dssp HHHHGGGCCCTTTG-----GGHHHHHHHHHCTTH----HHHHHHHHTTCCCCSCCCHHHHHHHHHHH--HHHHTSSSHHH
T ss_pred HHHHHhcCCCcchh-----hhHHHHHHHhcChhh----hHHHHHHhhcCeeEeeecchhHHHHHHHH--HhhhccCcchh
Confidence 77665555554432 234445555543333 223333333321 10 011100 01345667889
Q ss_pred HHHHHHHHHHhc---C-cCcHHHHHHHHHH-----hhhhccHHHHHHHHHHHHHH
Q 002971 293 KMEKLEIMIKLA---S-DRNIDQVLLEFKE-----YATEVDVDFVRKAVRAIGRC 338 (862)
Q Consensus 293 k~~~L~lL~~l~---~-~~Nv~~Iv~eL~~-----y~~~~d~~~~~~~i~~I~~l 338 (862)
||++.-+.-+|| + +.-+..-+..|+. +-+-+|+|.|..+-+++..+
T Consensus 268 ~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 268 KRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred heeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 988876655554 3 3334444444443 22347898888777766555
No 112
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=95.19 E-value=0.2 Score=54.20 Aligned_cols=147 Identities=16% Similarity=0.191 Sum_probs=104.2
Q ss_pred HHHHHHHHHHhhcCCCCHHHHhHHHHHhcCC---ChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccccccc
Q 002971 43 LAILAVNTFVKDSQDPNPLIRALAVRTMGCI---RVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDR 119 (862)
Q Consensus 43 l~~L~intl~kDl~~~n~~ir~lALr~l~~i---~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~ 119 (862)
-++-.+|.-.. .+++ .+...|+-+-.+ ..|++.+.+++.|.....|++..|||-.+--+...+..+++.+..
T Consensus 26 ~v~~lln~A~~---~~~~-~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~- 100 (386)
T 3o2t_A 26 RVVDLLNQAAL---ITND-SKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLK- 100 (386)
T ss_dssp HHHHHHHHHHH---CCST-HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHH-
T ss_pred HHHHHHHhhhc---cChH-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 33444554444 2232 466666666654 578899999999999999999999999999999999999999864
Q ss_pred chHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCC-----hhHHHHHHHHHhhcccccHH
Q 002971 120 GFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECT-----EWGQVFILDALSRYKAADAR 194 (862)
Q Consensus 120 ~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~-----~w~q~~iL~~L~~~~~~~~~ 194 (862)
.++.|..||+|.|+.|+-.++.+...|.+ -.++.+++. ...+ -|..+.-
T Consensus 101 -~l~~L~~LL~d~d~~V~K~~I~~~tslYp-----------l~f~~i~~~-~~~~~~~e~~W~~m~~------------- 154 (386)
T 3o2t_A 101 -LIANLNMLLRDENVNVVKKAILTMTQLYK-----------VALQWMVKS-RVISELQEACWDMVSA------------- 154 (386)
T ss_dssp -HHHHHHHHHTCSSHHHHHHHHHHHHHHHH-----------HHHHHHHHC--CCCHHHHHHHHHHHH-------------
T ss_pred -HHHHHHHHHcCCCHHHHHHHHHHHHHHHH-----------HHHHHHhcC-CCcchhHHHHHHHHHH-------------
Confidence 88999999999999999888887766532 134444332 1111 2433322
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 002971 195 EAENIVERVTPRLQHANCAVVLSAVKMILQ 224 (862)
Q Consensus 195 ~~~~il~~v~~~l~~~n~aV~~eai~~i~~ 224 (862)
+-+.|.....+.|.+|...|+|++-.
T Consensus 155 ----lK~~Il~~~ds~n~GVrl~aiKFle~ 180 (386)
T 3o2t_A 155 ----MAGDIILLLDSDNDGIRTHAIKFVEG 180 (386)
T ss_dssp ----HHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHhccCCcchHHHHHHHHHH
Confidence 22445556778899999999988754
No 113
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=95.04 E-value=0.5 Score=58.52 Aligned_cols=144 Identities=10% Similarity=0.120 Sum_probs=81.7
Q ss_pred cHHHHHHHHHHhhcCCC--CHHHH---hHHHHHhcCCChh----hhHHHHHHHHHhhhCCC-----ChHHHHHHHHHHHH
Q 002971 42 DLAILAVNTFVKDSQDP--NPLIR---ALAVRTMGCIRVD----KITEYLCDPLQRCLKDD-----DPYVRKTAAICVAK 107 (862)
Q Consensus 42 el~~L~intl~kDl~~~--n~~ir---~lALr~l~~i~~~----~~~~~l~~~v~~~l~d~-----~~yVRk~A~~~l~k 107 (862)
+..-.....+++-+.++ +...+ +.|+++|+.-..+ ...+.+++.+..+..++ .+.||...+..+.+
T Consensus 473 ~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgr 552 (1073)
T 3gjx_A 473 DTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQ 552 (1073)
T ss_dssp HHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhh
Confidence 33344555666655443 34444 4566666322222 45566666666666554 34555555566655
Q ss_pred H---HhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcc---------cccHHHHHHHHHHhccCCh
Q 002971 108 L---YDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIF---------EITSHTLSKLLTALNECTE 175 (862)
Q Consensus 108 l---~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~---------~l~~~~~~~Ll~~l~~~~~ 175 (862)
. .+.+|+.++. .+..|.+.+.|++++|..+|+.++..|+.+ |+..+ ..+...+..+-.......+
T Consensus 553 Y~~wl~~h~~~L~~--vl~~L~~~m~~~~~~vq~aA~~af~~i~~~-C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~ 629 (1073)
T 3gjx_A 553 YPRFLRAHWKFLKT--VVNKLFEFMHETHDGVQDMACDTFIKIAQK-CRRHFVQVQVGEVMPFIDEILNNINTIICDLQP 629 (1073)
T ss_dssp CHHHHHHCHHHHHH--HHHHHHHHTTCCSTTHHHHHHHHHHHHHHH-TGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCH
T ss_pred hHHHHHhCHHHHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-HHHHHhhccccccchHHHHHHHHHHHHHHhcCH
Confidence 3 3457777653 667777788899999999999999999875 33211 1222223333233334455
Q ss_pred hHHHHHHHHHhhc
Q 002971 176 WGQVFILDALSRY 188 (862)
Q Consensus 176 w~q~~iL~~L~~~ 188 (862)
-.+..+.+.++..
T Consensus 630 ~~~~~lyeav~~v 642 (1073)
T 3gjx_A 630 QQVHTFYEAVGYM 642 (1073)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555566655543
No 114
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=94.10 E-value=0.23 Score=50.58 Aligned_cols=184 Identities=19% Similarity=0.157 Sum_probs=117.1
Q ss_pred hcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCC
Q 002971 54 DSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNN 133 (862)
Q Consensus 54 Dl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d 133 (862)
=+.|+++.+|..|.+.+. + ..+.+++.|+++.||..|+..+ .+ +.+..++.|.|
T Consensus 58 ll~d~~~~VR~~AA~~l~----~-------~~l~~L~~D~~~~VR~~aA~~L------~~---------~~L~~ll~D~d 111 (244)
T 1lrv_A 58 YLADPFWERRAIAVRYSP----V-------EALTPLIRDSDEVVRRAVAYRL------PR---------EQLSALMFDED 111 (244)
T ss_dssp GTTCSSHHHHHHHHTTSC----G-------GGGGGGTTCSSHHHHHHHHTTS------CS---------GGGGGTTTCSC
T ss_pred HhcCCCHHHHHHHHHhCC----H-------HHHHHHccCcCHHHHHHHHHHC------CH---------HHHHHHHcCCC
Confidence 358999999999999763 1 2368888999999999999642 12 34667899999
Q ss_pred hhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCChH
Q 002971 134 PMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCA 213 (862)
Q Consensus 134 ~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~a 213 (862)
+.|...+...+ +.. . |...+.+.+++.+..+.+- ..+ +.+..+++..++.
T Consensus 112 ~~VR~~aA~~l-------~~~-------~---L~~L~~D~d~~VR~~aA~~---l~~----------~~l~~l~~D~d~~ 161 (244)
T 1lrv_A 112 REVRITVADRL-------PLE-------Q---LEQMAADRDYLVRAYVVQR---IPP----------GRLFRFMRDEDRQ 161 (244)
T ss_dssp HHHHHHHHHHS-------CTG-------G---GGGGTTCSSHHHHHHHHHH---SCG----------GGGGGTTTCSCHH
T ss_pred HHHHHHHHHhC-------CHH-------H---HHHHHcCCCHHHHHHHHHh---cCH----------HHHHHHHcCCCHH
Confidence 99998876643 111 1 2223467777777766652 111 1334566778888
Q ss_pred HHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhChhhhhccceEEEecCCCcHHH
Q 002971 214 VVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYV 292 (862)
Q Consensus 214 V~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~~~~~~~~~~~~l~~d~~~I 292 (862)
|..+++.. + .+ +.|..++ ..++++|..+...+ -+..+. ..+.+++..|
T Consensus 162 VR~~aa~~---l-----~~-----------~ll~~ll~D~d~~VR~aaa~~l------~~~~L~------~Ll~D~d~~V 210 (244)
T 1lrv_A 162 VRKLVAKR---L-----PE-----------ESLGLMTQDPEPEVRRIVASRL------RGDDLL------ELLHDPDWTV 210 (244)
T ss_dssp HHHHHHHH---S-----CG-----------GGGGGSTTCSSHHHHHHHHHHC------CGGGGG------GGGGCSSHHH
T ss_pred HHHHHHHc---C-----CH-----------HHHHHHHcCCCHHHHHHHHHhC------CHHHHH------HHHcCCCHHH
Confidence 88887764 1 11 1233555 46788999888763 122221 1245777889
Q ss_pred HHHHHHHHHHhcCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHH
Q 002971 293 KMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIG 336 (862)
Q Consensus 293 k~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~ 336 (862)
|..+..-+- .. ++..+.+.+..++..+..++|
T Consensus 211 R~~aa~~l~-----------~~-~L~~L~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 211 RLAAVEHAS-----------LE-ALRELDEPDPEVRLAIAGRLG 242 (244)
T ss_dssp HHHHHHHSC-----------HH-HHHHCCCCCHHHHHHHHCCC-
T ss_pred HHHHHHcCC-----------HH-HHHHccCCCHHHHHHHHHHhC
Confidence 888887642 12 333347777777777665554
No 115
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=93.60 E-value=0.64 Score=46.86 Aligned_cols=105 Identities=15% Similarity=0.090 Sum_probs=70.1
Q ss_pred hHHHHHHhhcCCCh--hHHHHHHHHHHHHhhcCCCCcccc-cHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHH
Q 002971 121 FLESLKDLISDNNP--MVVANAVAALAEIEENSSRPIFEI-TSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE 197 (862)
Q Consensus 121 ~~~~l~~lL~d~d~--~V~~~a~~~l~~i~~~~~~~~~~l-~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~ 197 (862)
-++.+.++|...|+ .+...|...+..++..++.....+ ....++.|+..|...++-.|......|..+...+++...
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 36788888887777 788788788877776543221111 224577888888888888898888888877655444333
Q ss_pred HH-----HHHHHHhhc-CCChHHHHHHHHHHHHh
Q 002971 198 NI-----VERVTPRLQ-HANCAVVLSAVKMILQQ 225 (862)
Q Consensus 198 ~i-----l~~v~~~l~-~~n~aV~~eai~~i~~~ 225 (862)
.+ +..+...|+ +.+..+.-.|+.++.++
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nL 122 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNL 122 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 33 445666676 45667777777777665
No 116
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=93.33 E-value=21 Score=44.20 Aligned_cols=133 Identities=13% Similarity=0.174 Sum_probs=83.5
Q ss_pred chHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCCh-------h----hh
Q 002971 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRV-------D----KI 78 (862)
Q Consensus 10 lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~-------~----~~ 78 (862)
.+-.++..+-+++-..|+-+.-++..+ +.+|+--..+..-|. .+.++.+|-.|+.+|-+... + .+
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~-q~sp~aw~~~~~iL~---~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~L 104 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHL-KEHPDAWTRVDTILE---FSQNMNTKYYGLQILENVIKTRWKILPRNQCEGI 104 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTS-SCCSCHHHHHTCC------CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHH-HcCchHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHH
Confidence 455677777777888899999999765 456774443333332 25689999999988876422 1 12
Q ss_pred HHHHHHHHHhhhCC-----CChHHHHHHHHHHHHHHhh-ccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhh
Q 002971 79 TEYLCDPLQRCLKD-----DDPYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEE 149 (862)
Q Consensus 79 ~~~l~~~v~~~l~d-----~~~yVRk~A~~~l~kl~~~-~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~ 149 (862)
-+.+...+.+...+ .++.++.+.+.++..+++. .|+.-++ +++.+..++..+ +...-.++..|..+.+
T Consensus 105 R~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~--fi~dLv~~~~~~-~~~~~~~L~IL~~L~E 178 (1073)
T 3gjx_A 105 KKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPT--FISDIVGASRTS-ESLCQNNMVILKLLSE 178 (1073)
T ss_dssp HHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTT--HHHHHHHHHHHC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccH--HHHHHHHHhCCC-HHHHHHHHHHHHHHHH
Confidence 23555555554333 3578889999999999886 6776543 777777777543 3333334444444443
No 117
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=92.63 E-value=0.35 Score=48.29 Aligned_cols=140 Identities=13% Similarity=0.089 Sum_probs=89.1
Q ss_pred CcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHh-hcCCCCHHHHhHHHHHhcCCC---hhhhHHH
Q 002971 6 DVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVK-DSQDPNPLIRALAVRTMGCIR---VDKITEY 81 (862)
Q Consensus 6 dvs~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~k-Dl~~~n~~ir~lALr~l~~i~---~~~~~~~ 81 (862)
|....+.-+-.+.+++.++.|-++--.+... ...++ +...++. =..|++--||-.+-..++.+. .++ .
T Consensus 68 ~~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~~~----~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---~ 139 (240)
T 3l9t_A 68 DGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKDKE----ILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---K 139 (240)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTSHH----HHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---T
T ss_pred CHHHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCcHH----HHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---H
Confidence 3444555555677777777776654444444 32222 3334443 344677767655544444443 233 2
Q ss_pred HHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccc-cchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCC
Q 002971 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED-RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP 154 (862)
Q Consensus 82 l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~-~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~ 154 (862)
+.+.+.+-+.|.++.|||.|+.+... +..-|....+ ...++.|..+..|++--|.-+.-..|.++.+.+|.-
T Consensus 140 ~l~~~~~W~~d~n~~VRR~Ase~~rp-W~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~ 212 (240)
T 3l9t_A 140 ALPIIDEWLKSSNLHTRRAATEGLRI-WTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDL 212 (240)
T ss_dssp THHHHHHHHHCSSHHHHHHHHHHTCS-GGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhhHH-HhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHH
Confidence 44567888899999999999999743 1111222221 235688889999999999999999999999988763
No 118
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=91.81 E-value=2.1 Score=43.89 Aligned_cols=171 Identities=12% Similarity=0.123 Sum_probs=112.8
Q ss_pred HHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHh----hcCCCCHHHHhHHHHHhcCCC----------hhh
Q 002971 12 TDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVK----DSQDPNPLIRALAVRTMGCIR----------VDK 77 (862)
Q Consensus 12 ~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~k----Dl~~~n~~ir~lALr~l~~i~----------~~~ 77 (862)
.++...+-++|+..+--|.=.+....+.+++..+-..--+.| =+.|+|+.+-..+|.++..+- .+.
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ 128 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE 128 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 345556667788666656666666666666643322222333 234778888888888877652 223
Q ss_pred hHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCccc
Q 002971 78 ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFE 157 (862)
Q Consensus 78 ~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~ 157 (862)
.+..++|.+..-+.|+..-||..+--.+..+...+|-. .+.+.+.+.+..+|.-+...++..+..+.+..+..
T Consensus 129 ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~----~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--- 201 (266)
T 2of3_A 129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL----KMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--- 201 (266)
T ss_dssp HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH----HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG---
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC---
Confidence 34577788888889999999988888877777665532 36677777888888888877766666554332210
Q ss_pred ccHHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHH---HHHHHhhcCCChHHHHHHHHHHHHhhh
Q 002971 158 ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIV---ERVTPRLQHANCAVVLSAVKMILQQME 227 (862)
Q Consensus 158 l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il---~~v~~~l~~~n~aV~~eai~~i~~~~~ 227 (862)
+ ...+ ..+..++..+|++|.=+|++++..++.
T Consensus 202 --------------------------------~------~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 202 --------------------------------P------LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp --------------------------------G------GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred --------------------------------c------cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 0 0112 556677888888999888888887654
No 119
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=91.66 E-value=1.2 Score=52.70 Aligned_cols=65 Identities=23% Similarity=0.239 Sum_probs=43.6
Q ss_pred HHhhhCCCChHHHHHHHHHHHHHHhhcccc---ccccchH-HHHHHhhcCCChhHHHHHHHHHHHHhhcC
Q 002971 86 LQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFL-ESLKDLISDNNPMVVANAVAALAEIEENS 151 (862)
Q Consensus 86 v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~---~~~~~~~-~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 151 (862)
+.+.|.++++-+|..|+.|+..+.. +|+. +...+.+ ..|..+|.|++..|+.+|..+|..++...
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 3445778888888888888888775 5442 1112343 44567788888888888888887776554
No 120
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=91.21 E-value=0.32 Score=60.54 Aligned_cols=122 Identities=12% Similarity=0.061 Sum_probs=87.4
Q ss_pred CCcchHHHHHHHHHHhcCC--------CCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhh---
Q 002971 21 ENLELKKLVYLYLINYAKS--------QPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRC--- 89 (862)
Q Consensus 21 ~~~~~Kkl~Yl~l~~~~~~--------~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~--- 89 (862)
++..+++.++|++..+.+. .+++.--+.+.+.+-+...++.-+-++|++|||++.++.++.+.+.+...
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p~~l~~l~~~l~~~~~~ 486 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPNSIKKIQRFLPGQGKS 486 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCGGGHHHHHTTSTTSSSC
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCChhHHHHHHHhhcCcccc
Confidence 3455777788888665431 33555666677777777778999999999999999998877654443221
Q ss_pred hCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhc--CCChhHHHHHHHHHHHH
Q 002971 90 LKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLIS--DNNPMVVANAVAALAEI 147 (862)
Q Consensus 90 l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~--d~d~~V~~~a~~~l~~i 147 (862)
-.+....||..|+.|+.++-..+|+.+. +.+..+.. +.++.|..+|+.+|.+-
T Consensus 487 ~~~~~~rvr~aAi~ALr~~~~~~p~~v~-----~il~~i~~n~~e~~EvRiaA~~~Lm~t 541 (1056)
T 1lsh_A 487 LDEYSTRVQAEAIMALRNIAKRDPRKVQ-----EIVLPIFLNVAIKSELRIRSCIVFFES 541 (1056)
T ss_dssp CCCSCHHHHHHHHHTTTTGGGTCHHHHH-----HHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred ccccchHHHHHHHHHHHHhhhhchHHHH-----HHHHHHhcCCCCChHHHHHHHHHHHHH
Confidence 1223557999999999999887776554 56667764 46889998888887654
No 121
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=90.39 E-value=4.3 Score=43.86 Aligned_cols=123 Identities=15% Similarity=0.188 Sum_probs=85.3
Q ss_pred HHHHHHH-HHH-hcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC--hhhhHHHHHHHHHhhhCCCChHHHHHH
Q 002971 26 KKLVYLY-LIN-YAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQRCLKDDDPYVRKTA 101 (862)
Q Consensus 26 Kkl~Yl~-l~~-~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~--~~~~~~~l~~~v~~~l~d~~~yVRk~A 101 (862)
.|+-+|. +.. +.+.+|++.--....+..=-.+++..+|.....++.... ..+++..+++.+..++.|.++.|-|+|
T Consensus 41 ~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~K~~ 120 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVKKA 120 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 3444442 333 355667644444444444445778889988888887665 577888999999999999999999999
Q ss_pred HHHHHHHHhh-------cccc---ccc-----cchHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 002971 102 AICVAKLYDI-------NAEL---VED-----RGFLESLKDLISDNNPMVVANAVAALAEIE 148 (862)
Q Consensus 102 ~~~l~kl~~~-------~p~~---~~~-----~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~ 148 (862)
+.|...+|+. +|.. .+. ..+.+.|..++...|.+|..+|+..+..+.
T Consensus 121 I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 121 ILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 9999999964 3331 111 123345556777789999999999888764
No 122
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=89.04 E-value=52 Score=41.38 Aligned_cols=130 Identities=12% Similarity=0.021 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHHhhcc-ccc-cc-cchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCC--C---ccccc-HHHHHH
Q 002971 95 PYVRKTAAICVAKLYDINA-ELV-ED-RGFLESLKDLISDNNPMVVANAVAALAEIEENSSR--P---IFEIT-SHTLSK 165 (862)
Q Consensus 95 ~yVRk~A~~~l~kl~~~~p-~~~-~~-~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~--~---~~~l~-~~~~~~ 165 (862)
+-+++.|.-|+......-| ..+ .. ..+++.+..++.+ +.+..+|+.+|.+|...... . .+..+ ...+.+
T Consensus 221 ~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~ 298 (1204)
T 3a6p_A 221 CRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHY 298 (1204)
T ss_dssp HHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHH
Confidence 4466777777765554433 222 11 1266777767664 56778889999999875432 1 12221 111234
Q ss_pred HHHHhc--cC---C---hhHHHHHHHHHhhccc------------ccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 002971 166 LLTALN--EC---T---EWGQVFILDALSRYKA------------ADAREAENIVERVTPRLQHANCAVVLSAVKMILQQ 225 (862)
Q Consensus 166 Ll~~l~--~~---~---~w~q~~iL~~L~~~~~------------~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~ 225 (862)
++.... +. + .=...++-+++..+.- ........+++.+..+.+|.+..|...+..+-..+
T Consensus 299 l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~l 378 (1204)
T 3a6p_A 299 ILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGAL 378 (1204)
T ss_dssp HHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHH
Confidence 444431 11 1 1111123333333220 12223456778888888888877777777665544
Q ss_pred h
Q 002971 226 M 226 (862)
Q Consensus 226 ~ 226 (862)
+
T Consensus 379 l 379 (1204)
T 3a6p_A 379 F 379 (1204)
T ss_dssp H
T ss_pred H
Confidence 3
No 123
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=87.89 E-value=15 Score=38.63 Aligned_cols=83 Identities=13% Similarity=0.100 Sum_probs=58.0
Q ss_pred hhhCCCChHHHHHHHHHHHHHHhhccccccccchH-----HHHHHhhcCCChhHHHHHHHHHHHHhhcCCC-CcccccHH
Q 002971 88 RCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFL-----ESLKDLISDNNPMVVANAVAALAEIEENSSR-PIFEITSH 161 (862)
Q Consensus 88 ~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~-----~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~-~~~~l~~~ 161 (862)
+.|.+++.-.+|.|...+.+++..+++.+.+ |+ ..|.+...+.+.....-++.||.++..+..+ ..+.-...
T Consensus 125 ekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~E--FI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~ 202 (339)
T 3dad_A 125 EKLYSSSGPELRRSLFSLKQIFQEDKDLVPE--FVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSD 202 (339)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHTCTTHHHH--HHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHhhcchHHHHH--HHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHH
Confidence 3444677788999999999999988887764 43 4667777788999999999999998765211 00111334
Q ss_pred HHHHHHHHhcc
Q 002971 162 TLSKLLTALNE 172 (862)
Q Consensus 162 ~~~~Ll~~l~~ 172 (862)
.+++++..+..
T Consensus 203 fI~~lyslv~s 213 (339)
T 3dad_A 203 TIQWLYTLCAS 213 (339)
T ss_dssp HHHHHHHGGGC
T ss_pred HHHHHHHHHcC
Confidence 56666666653
No 124
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=86.38 E-value=48 Score=40.99 Aligned_cols=171 Identities=16% Similarity=0.186 Sum_probs=102.5
Q ss_pred ChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhc-------c-ccccccchHHHHHHhhcCCChhHHHHHHHHHH
Q 002971 74 RVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN-------A-ELVEDRGFLESLKDLISDNNPMVVANAVAALA 145 (862)
Q Consensus 74 ~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~-------p-~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~ 145 (862)
.++++++.+.+-+..--...+|++|++|++++..+.+++ | +.++ .+.+.+.+.+...|...+.-++.+|.
T Consensus 388 Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~--~i~~~l~~~~~~~~~~~~~~~LkaLG 465 (1056)
T 1lsh_A 388 ATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQ--PLHDLLSQSSDRAKEEEIVLALKALG 465 (1056)
T ss_dssp CCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTH--HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH--HHHHHHHHHHhcCChHHHHHHHHHhh
Confidence 355666655444333323378999999999998887642 1 2232 35666677777777776777777777
Q ss_pred HHhhcCCCCcccccHHHHHHHHHHhccC-----C--hhHHHHHHHHHhhcccccHHHHHHHHHHHHHhh--cCCChHHHH
Q 002971 146 EIEENSSRPIFEITSHTLSKLLTALNEC-----T--EWGQVFILDALSRYKAADAREAENIVERVTPRL--QHANCAVVL 216 (862)
Q Consensus 146 ~i~~~~~~~~~~l~~~~~~~Ll~~l~~~-----~--~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l--~~~n~aV~~ 216 (862)
.+... ..+..|...+..+ + .-.++..+..|.++....++....++ .+.. ..-.+-|..
T Consensus 466 N~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~~il---~~i~~n~~e~~EvRi 532 (1056)
T 1lsh_A 466 NAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEIV---LPIFLNVAIKSELRI 532 (1056)
T ss_dssp HHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHHH---HHHHHCTTSCHHHHH
T ss_pred ccCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHHHHH---HHHhcCCCCChHHHH
Confidence 76421 2345555555321 1 23556678888888776665555443 4544 344568999
Q ss_pred HHHHHHHHhhhccCChHHHHHHHHhcccchhhccc--CChhHHHHHHHHHHHHHhh
Q 002971 217 SAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS--AEPEIQYVALRNINLIVQR 270 (862)
Q Consensus 217 eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~lls--~~~~iry~aL~~l~~i~~~ 270 (862)
.|+..++..- ++...+..++ ..+. .+..++-.+..+|..++..
T Consensus 533 aA~~~Lm~t~---P~~~~l~~ia--------~~l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 533 RSCIVFFESK---PSVALVSMVA--------VRLRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp HHHHHHHHTC---CCHHHHHHHH--------HHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHC---cCHHHHHHHH--------HHHhhCchHHHHHHHHHHHHHHHhc
Confidence 9988887642 3334444322 2332 3445776777777776654
No 125
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=86.27 E-value=1.8 Score=48.48 Aligned_cols=229 Identities=15% Similarity=0.146 Sum_probs=137.3
Q ss_pred hHhccCCCcchHHHHHHHHHHhcCCC-----------CcHHHHHHHHHHhh----cCCC--CHHHHhHHHHHhcCCC--h
Q 002971 15 VNCMQTENLELKKLVYLYLINYAKSQ-----------PDLAILAVNTFVKD----SQDP--NPLIRALAVRTMGCIR--V 75 (862)
Q Consensus 15 v~l~~s~~~~~Kkl~Yl~l~~~~~~~-----------~el~~L~intl~kD----l~~~--n~~ir~lALr~l~~i~--~ 75 (862)
+.-+-+++-+.|.=+.+++..+.+.+ .|++.-.+-.|.-| --+. ---||--|-.+||.+. .
T Consensus 180 ~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL~hLp 259 (800)
T 3oc3_A 180 SDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRIYPLI 259 (800)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHHTTTS
T ss_pred HHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHHHhCC
Confidence 33456777888888888888876433 36555544444433 2222 1245544444444431 1
Q ss_pred hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccc-cchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCC
Q 002971 76 DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED-RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP 154 (862)
Q Consensus 76 ~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~-~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~ 154 (862)
++ .+. +..+.+.+....+-||--+.+++-.+ -+++.. .+..+.+...|.|.|--|.+.|..+|..++ .+.
T Consensus 260 ~e-~~I-L~qLV~~l~~~~WEVRHGGLLGLKYL----~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~- 330 (800)
T 3oc3_A 260 GP-NDI-IEQLVGFLDSGDWQVQFSGLIALGYL----KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITD- 330 (800)
T ss_dssp CS-CCH-HHHHTTGGGCSCHHHHHHHHHHHHHT----GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSS-
T ss_pred hh-HHH-HHHHHhhcCCCCeeehhhhHHHHHHH----HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chh-
Confidence 22 222 22223455778999999999988866 333321 246778888899999999999999998887 222
Q ss_pred cccccHHHHHHHHHHhccCCh--hHHHHHHHHHhhcccccHH--HHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccC
Q 002971 155 IFEITSHTLSKLLTALNECTE--WGQVFILDALSRYKAADAR--EAENIVERVTPRLQHANCAVVLSAVKMILQQMELIT 230 (862)
Q Consensus 155 ~~~l~~~~~~~Ll~~l~~~~~--w~q~~iL~~L~~~~~~~~~--~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~ 230 (862)
.....+..+-.+|.+.++ -....++++|+.++..... ....++.++.|.++|+-++|..++.+++..++
T Consensus 331 ---~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL---- 403 (800)
T 3oc3_A 331 ---SLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS---- 403 (800)
T ss_dssp ---THHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC----
T ss_pred ---hHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH----
Confidence 122233444344433222 1344566777654422110 00156778899999999999999999987653
Q ss_pred ChHHHHHHHHhcccchhhcccCChhHHHHHHHHHH
Q 002971 231 STDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNIN 265 (862)
Q Consensus 231 ~~~~~~~~~~~~~~~L~~lls~~~~iry~aL~~l~ 265 (862)
+...++-+.++ -|+..+.+++-.+++.-.
T Consensus 404 ~~~~LRLIFQN------ILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 404 EESIDFLVAEV------VLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp CHHHHHHHHHH------HHHCSCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHH------HHhCCcHHHHHHHHHHHH
Confidence 45555543332 134677788877776553
No 126
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=86.25 E-value=1.2 Score=52.68 Aligned_cols=145 Identities=14% Similarity=0.086 Sum_probs=83.8
Q ss_pred HHhhcCCCCHHHHhHHHHHhcCCC-hhhhHH-----HHH-HHHHhhhCCCChHHHHHHHHHHHHHHhh-cccccc---cc
Q 002971 51 FVKDSQDPNPLIRALAVRTMGCIR-VDKITE-----YLC-DPLQRCLKDDDPYVRKTAAICVAKLYDI-NAELVE---DR 119 (862)
Q Consensus 51 l~kDl~~~n~~ir~lALr~l~~i~-~~~~~~-----~l~-~~v~~~l~d~~~yVRk~A~~~l~kl~~~-~p~~~~---~~ 119 (862)
+.+.|+|+++..|..|+.+|++|. ++++.. .++ +.|.++|.|++.-||..|+-|+..+... .++... +.
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~ 118 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRL 118 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHc
Confidence 456699999999999999999987 333322 233 4467889999999999999999877644 233321 12
Q ss_pred chHHHHHHhhcCCC---------------------hhHHHHHHHHHHHHhhcCCCCcccc-cHHHHHHHHHHhcc---CC
Q 002971 120 GFLESLKDLISDNN---------------------PMVVANAVAALAEIEENSSRPIFEI-TSHTLSKLLTALNE---CT 174 (862)
Q Consensus 120 ~~~~~l~~lL~d~d---------------------~~V~~~a~~~l~~i~~~~~~~~~~l-~~~~~~~Ll~~l~~---~~ 174 (862)
+.++.|..+|.... +.+.-+++.+|..++..+....-.+ ....+..|+..|.. ..
T Consensus 119 ~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~ 198 (684)
T 4gmo_A 119 DVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAP 198 (684)
T ss_dssp THHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSC
T ss_pred ChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCc
Confidence 34555555443110 1233355666666665432211000 11334455555432 22
Q ss_pred hhHHHHHHHHHhhcccccHHH
Q 002971 175 EWGQVFILDALSRYKAADARE 195 (862)
Q Consensus 175 ~w~q~~iL~~L~~~~~~~~~~ 195 (862)
.=.+..++++|..+...+++.
T Consensus 199 ~~v~~~a~~~L~~ls~dn~~~ 219 (684)
T 4gmo_A 199 QDIYEEAISCLTTLSEDNLKV 219 (684)
T ss_dssp HHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhccCHHH
Confidence 345666777777666555443
No 127
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=85.76 E-value=5.7 Score=40.39 Aligned_cols=123 Identities=18% Similarity=0.159 Sum_probs=88.3
Q ss_pred HHHHHHH-HHH-hcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC--hhhhHHHHHHHHHhhhCCCChHHHHHH
Q 002971 26 KKLVYLY-LIN-YAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQRCLKDDDPYVRKTA 101 (862)
Q Consensus 26 Kkl~Yl~-l~~-~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~--~~~~~~~l~~~v~~~l~d~~~yVRk~A 101 (862)
.|+-+|. +.. ..+.+|++.--+...+..=-.+++..+|-.-..++.... .++++..+++.+..++.|.++.|-|+|
T Consensus 31 ~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~K~~ 110 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKRV 110 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 5555543 333 455577765555555555445678889988888886654 578899999999999999999999999
Q ss_pred HHHHHHHHhh-------cccc---ccc-----cchHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 002971 102 AICVAKLYDI-------NAEL---VED-----RGFLESLKDLISDNNPMVVANAVAALAEIE 148 (862)
Q Consensus 102 ~~~l~kl~~~-------~p~~---~~~-----~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~ 148 (862)
+.|...+|+. +|+. .+. ..+.+.+..++...+.+|..+|+..+..+.
T Consensus 111 I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 111 IQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 9999999975 3331 111 123345556777789999999999887754
No 128
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=83.02 E-value=6.2 Score=44.26 Aligned_cols=131 Identities=13% Similarity=0.135 Sum_probs=72.0
Q ss_pred HhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCC-CC
Q 002971 16 NCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD-DD 94 (862)
Q Consensus 16 ~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~d-~~ 94 (862)
+.+..+.-+.+.=|-|.+.-+.+.-.+ .--+++.+.+-|.|+++.||+.|-.+|.-+..++-++.+..-+-.+|.+ .+
T Consensus 270 ~~l~~~~WEVRHGGLLGLKYL~DLL~~-Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA~p~~l~~LL~iLWd~L~~LDD 348 (800)
T 3oc3_A 270 GFLDSGDWQVQFSGLIALGYLKEFVED-KDGLCRKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESEEL 348 (800)
T ss_dssp TGGGCSCHHHHHHHHHHHHHTGGGCCC-HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSCCSSTHHHHHHHHHHHHHTCCS
T ss_pred hhcCCCCeeehhhhHHHHHHHHHHHHH-HHHHHHHHHhhcCCcccHHHHHHHHHhhhhcchhhHHHHHHHHHHHhhhhcc
Confidence 334555666666666666644111111 3455666777777777777777777777766555555555555544443 11
Q ss_pred hHHHHHHHHH-HHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHH
Q 002971 95 PYVRKTAAIC-VAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEI 147 (862)
Q Consensus 95 ~yVRk~A~~~-l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i 147 (862)
--.-..++|- +.+++...++...++..+++|...|..+-++|..+++.++..+
T Consensus 349 LSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tf 402 (800)
T 3oc3_A 349 ISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNL 402 (800)
T ss_dssp CCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTC
T ss_pred cchhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Confidence 1112233333 3345554444333445666777777777777777766666544
No 129
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=77.01 E-value=3.3 Score=50.81 Aligned_cols=102 Identities=9% Similarity=0.053 Sum_probs=74.2
Q ss_pred chHHHhHhccCCCc-chHHH-HHHHHHHhcCC--CCcHHHHHHHHHHhhcC-CCCHHHHhHHHHHhc--------CCChh
Q 002971 10 LFTDVVNCMQTENL-ELKKL-VYLYLINYAKS--QPDLAILAVNTFVKDSQ-DPNPLIRALAVRTMG--------CIRVD 76 (862)
Q Consensus 10 lf~~vv~l~~s~~~-~~Kkl-~Yl~l~~~~~~--~~el~~L~intl~kDl~-~~n~~ir~lALr~l~--------~i~~~ 76 (862)
++|.++.+...+|- ++.++ ++..+..++.. .++.+-.+++.+..-.+ +++- .|..+|.++- .+..
T Consensus 761 llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~- 838 (997)
T 1vsy_5 761 VLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTE- 838 (997)
T ss_dssp TTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCT-
T ss_pred HHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCH-
Confidence 34444455555655 67788 66666666543 45667778889877776 6777 9999988853 2333
Q ss_pred hhHHHHHHHHHhhhCCCC-hHHHHHHHHHHHHHHhhc-c
Q 002971 77 KITEYLCDPLQRCLKDDD-PYVRKTAAICVAKLYDIN-A 113 (862)
Q Consensus 77 ~~~~~l~~~v~~~l~d~~-~yVRk~A~~~l~kl~~~~-p 113 (862)
+-.+.+...|.++|.|+. .-||..|+.++.-+.+-. +
T Consensus 839 ~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~ 877 (997)
T 1vsy_5 839 EEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKE 877 (997)
T ss_dssp THHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCc
Confidence 333677888999999999 999999999999888766 5
No 130
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=77.00 E-value=9.1 Score=37.89 Aligned_cols=149 Identities=9% Similarity=-0.013 Sum_probs=85.6
Q ss_pred hHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCC-HHHHhHHHHHhcCCC--hhhhHHHHHHHHHhhhC
Q 002971 15 VNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPN-PLIRALAVRTMGCIR--VDKITEYLCDPLQRCLK 91 (862)
Q Consensus 15 v~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n-~~ir~lALr~l~~i~--~~~~~~~l~~~v~~~l~ 91 (862)
-.|..+.-++.+-++-+++....+.-.+-.+-.+..+... -.| ..+=++| ++++.+- .++ .+.+.+.+-+.
T Consensus 61 ~~L~~s~~~E~r~la~~~l~~~~~~~~~~~l~~~~~~l~~--~~nWd~~D~~a-~~~~~~~~~~~~---~~~~~i~~W~~ 134 (220)
T 2b6c_A 61 EAYYQKTEREYQYVAIDLALQNVQRFSLEEVVAFKAYVPQ--KAWWDSVDAWR-KFFGSWVALHLT---ELPTIFALFYG 134 (220)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHTGGGCCHHHHHHGGGGTTT--TCSHHHHHHHH-HHHHHHHHHSGG---GHHHHHHHHTT
T ss_pred HHHHcCchhHHHHHHHHHHHHHHhhCCHHHHHHHHHHhcc--CCcHHHHHHHH-HHHHHHHHHChH---HHHHHHHHHHc
Confidence 4467777777777777777655433222222223333332 122 2333344 3333321 111 23455788999
Q ss_pred CCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhc
Q 002971 92 DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALN 171 (862)
Q Consensus 92 d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~ 171 (862)
|.+.++||.|+.+.+...+ ..+ .. ...+.+..++.|++--|.-+.--+|.++.+.++. .+...+ .-.
T Consensus 135 s~~~w~rR~ai~~~l~~~~-~~~-~~--~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~--------~v~~fl-~~~ 201 (220)
T 2b6c_A 135 AENFWNRRVALNLQLMLKE-KTN-QD--LLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQ--------WVEELM-KEL 201 (220)
T ss_dssp CSSHHHHHHHHHTTTTCGG-GCC-HH--HHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHH--------HHHHHH-HHS
T ss_pred CCCHHHHHHHHHHHHHHHH-CCC-HH--HHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHH--------HHHHHH-hhc
Confidence 9999999999998863322 111 11 2456666688999999988888889999877653 233333 223
Q ss_pred cCChhHHHHHH
Q 002971 172 ECTEWGQVFIL 182 (862)
Q Consensus 172 ~~~~w~q~~iL 182 (862)
..++|..-+.+
T Consensus 202 ~l~~~~~r~Ai 212 (220)
T 2b6c_A 202 VLSPLAQREGS 212 (220)
T ss_dssp CCCHHHHHHHT
T ss_pred cCCHHHHHHHH
Confidence 45677655543
No 131
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=74.45 E-value=3.9 Score=41.31 Aligned_cols=91 Identities=18% Similarity=0.246 Sum_probs=59.7
Q ss_pred hHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCC
Q 002971 15 VNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDD 94 (862)
Q Consensus 15 v~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~d~~ 94 (862)
..++..++..+|+.+-- .+. ...+..=++|+++.||..|.+.++ + +.+..++.|++
T Consensus 128 ~~L~~D~d~~VR~~aA~---~l~----------~~~l~~l~~D~d~~VR~~aa~~l~----~-------~ll~~ll~D~d 183 (244)
T 1lrv_A 128 EQMAADRDYLVRAYVVQ---RIP----------PGRLFRFMRDEDRQVRKLVAKRLP----E-------ESLGLMTQDPE 183 (244)
T ss_dssp GGGTTCSSHHHHHHHHH---HSC----------GGGGGGTTTCSCHHHHHHHHHHSC----G-------GGGGGSTTCSS
T ss_pred HHHHcCCCHHHHHHHHH---hcC----------HHHHHHHHcCCCHHHHHHHHHcCC----H-------HHHHHHHcCCC
Confidence 34566777777776543 221 234456677899999999988743 1 23457788999
Q ss_pred hHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHH
Q 002971 95 PYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAAL 144 (862)
Q Consensus 95 ~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l 144 (862)
+.||+.|+..+ .+ +.|..++.|.++.|..++...+
T Consensus 184 ~~VR~aaa~~l------~~---------~~L~~Ll~D~d~~VR~~aa~~l 218 (244)
T 1lrv_A 184 PEVRRIVASRL------RG---------DDLLELLHDPDWTVRLAAVEHA 218 (244)
T ss_dssp HHHHHHHHHHC------CG---------GGGGGGGGCSSHHHHHHHHHHS
T ss_pred HHHHHHHHHhC------CH---------HHHHHHHcCCCHHHHHHHHHcC
Confidence 99999888652 11 3355667788888776665544
No 132
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=71.22 E-value=8.7 Score=38.48 Aligned_cols=71 Identities=8% Similarity=0.064 Sum_probs=55.7
Q ss_pred CCCCHHHHhHHHH----HhcCCC----hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHH
Q 002971 56 QDPNPLIRALAVR----TMGCIR----VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKD 127 (862)
Q Consensus 56 ~~~n~~ir~lALr----~l~~i~----~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~ 127 (862)
.|+|+..|-.|+- .++... ...-.+.+...+...+.|.+.||||...-++..+.+.+|+.+.. ++..-..
T Consensus 118 ~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~~~~~--al~~~~~ 195 (235)
T 1t06_A 118 ASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVPLHEK--AVEIAKE 195 (235)
T ss_dssp HSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGGGHHH--HHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHHHHHH--HHHHHHH
Confidence 6789999988888 555544 23455677778888999999999999999999999999998864 5555444
Q ss_pred h
Q 002971 128 L 128 (862)
Q Consensus 128 l 128 (862)
+
T Consensus 196 l 196 (235)
T 1t06_A 196 V 196 (235)
T ss_dssp H
T ss_pred h
Confidence 4
No 133
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=70.26 E-value=27 Score=31.76 Aligned_cols=94 Identities=9% Similarity=0.085 Sum_probs=62.6
Q ss_pred HhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---hh----hhH-HHHHHHHH
Q 002971 16 NCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---VD----KIT-EYLCDPLQ 87 (862)
Q Consensus 16 ~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~---~~----~~~-~~l~~~v~ 87 (862)
+..+...-+.---+.+-++-....+++-..-++-.|+|=|+++||.+.-+||..|-.+. .+ +++ +.+...+.
T Consensus 12 kAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~ 91 (140)
T 3ldz_A 12 KATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVS 91 (140)
T ss_dssp HHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHH
T ss_pred HHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHH
Confidence 34444444455556666777778888888889999999999999999888887665331 11 111 33445555
Q ss_pred hhhCCCChHHHHHHHHHHHHHH
Q 002971 88 RCLKDDDPYVRKTAAICVAKLY 109 (862)
Q Consensus 88 ~~l~d~~~yVRk~A~~~l~kl~ 109 (862)
+++...++-||++....+..-.
T Consensus 92 ~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 92 NVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHH
Confidence 6665578888888877665443
No 134
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=69.68 E-value=1.1e+02 Score=31.95 Aligned_cols=99 Identities=11% Similarity=0.053 Sum_probs=53.5
Q ss_pred HhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHH-----HHHhhcCCCCHHHHhHHHHHhcCCChh-----hhH--HH
Q 002971 14 VVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVN-----TFVKDSQDPNPLIRALAVRTMGCIRVD-----KIT--EY 81 (862)
Q Consensus 14 vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~in-----tl~kDl~~~n~~ir~lALr~l~~i~~~-----~~~--~~ 81 (862)
++.-+.+.+-..+|-.-.-+..+...+.+++.-.|+ .|.+=..+....+.+.|||++..+..- .++ +.
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~ 202 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSD 202 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHH
Confidence 444444555555555555556544455454433332 233334455667777777777776643 333 34
Q ss_pred HHHHHHhhhCCCChHHHHHHHHHHHHHHhhc
Q 002971 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDIN 112 (862)
Q Consensus 82 l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~ 112 (862)
.+.-|...+.+..+.|-|.|.--+..+...+
T Consensus 203 fI~~lyslv~s~~~~V~k~AL~LL~v~V~~s 233 (339)
T 3dad_A 203 TIQWLYTLCASLSRLVVKTALKLLLVFVEYS 233 (339)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHccC
Confidence 5555566666666666666655555554443
No 135
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=69.33 E-value=1.3e+02 Score=32.44 Aligned_cols=135 Identities=11% Similarity=0.238 Sum_probs=84.1
Q ss_pred HHHHHHHhhhcch-hHHHHHHHHHHHHHhCc-ccHHHHHHHHHHhh---ccCC-chHHHHHHHHHHhhcccccCC-HHHH
Q 002971 351 SVLLELIKIKVNY-VVQEAIIVIKDIFRRYP-NTYESIIATLCESL---DTLD-EPEAKASMIWIIGEYAERIDN-ADEL 423 (862)
Q Consensus 351 ~~ll~ll~~~~~~-v~~e~i~~l~~i~~~~p-~~~~~~i~~L~~~l---~~~~-~~~~~~~~~wilGEy~~~i~~-~~~~ 423 (862)
+.+.+++-....+ -..|....+..|+.... -+.+.-...+.+.| .... .+.-..-+++++-.|.+.-+. +..+
T Consensus 173 nif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~v 252 (403)
T 3fga_B 173 NIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV 252 (403)
T ss_dssp HHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHH
Confidence 4445554433322 35578888888888762 11111112222222 2221 112245677888888765443 6789
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH---HHhcccCCCChHHHHHHHHHH
Q 002971 424 LESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVV---LNNATVETDNPDLRDRAYIYW 486 (862)
Q Consensus 424 l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~~~~~~~~~i~~~---l~~~~~~s~~~dvrdRA~~y~ 486 (862)
++.+++.|+..++.-+...|.-+..+.-..++++.+.....+ +..|. +|.+..|-+||..+|
T Consensus 253 i~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci-~S~hfqVAErAL~~w 317 (403)
T 3fga_B 253 VMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCV-SSPHFQVAERALYYW 317 (403)
T ss_dssp HHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH-TCSCHHHHHHHHGGG
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHh
Confidence 999999999999998999999888888766543233333333 33455 578999999999998
No 136
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=68.55 E-value=6.4 Score=39.05 Aligned_cols=68 Identities=13% Similarity=0.123 Sum_probs=52.1
Q ss_pred HHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccc
Q 002971 51 FVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED 118 (862)
Q Consensus 51 l~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~ 118 (862)
+.+=+.|+|+.+|=.|+-.+-.-....-.+.+.+.+..++.|++-||||..+-++--+++.+|+.+..
T Consensus 129 i~~W~~s~~~w~rR~ai~~~l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~ 196 (220)
T 2b6c_A 129 FALFYGAENFWNRRVALNLQLMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEE 196 (220)
T ss_dssp HHHHTTCSSHHHHHHHHHTTTTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 45666889999888887754332233333556667777999999999999999999999999997753
No 137
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=67.68 E-value=32 Score=34.03 Aligned_cols=94 Identities=20% Similarity=0.171 Sum_probs=64.4
Q ss_pred HHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCC------------ChhhhH
Q 002971 12 TDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI------------RVDKIT 79 (862)
Q Consensus 12 ~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i------------~~~~~~ 79 (862)
-.|-++......+.---+.+.+.-....+++-+.-++..|+|=|+++||.++-+||..|-.+ ...++.
T Consensus 11 ~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl 90 (226)
T 3zyq_A 11 RLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTM 90 (226)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHH
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHH
Confidence 33444555555555555667777777777787888999999999999999999999877643 333333
Q ss_pred HHHHHHHHhhhC-CCChHHHHHHHHHHHHHH
Q 002971 80 EYLCDPLQRCLK-DDDPYVRKTAAICVAKLY 109 (862)
Q Consensus 80 ~~l~~~v~~~l~-d~~~yVRk~A~~~l~kl~ 109 (862)
+ .+.+++. ..++-||++++.-+..-.
T Consensus 91 ~----~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 91 E----ELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp H----HHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred H----HHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 3 3444443 367789888777665443
No 138
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=67.49 E-value=5.6 Score=39.81 Aligned_cols=137 Identities=11% Similarity=0.119 Sum_probs=84.6
Q ss_pred HHhHhccCCCcchHHHHHHHHHHhcCC-CCcHHHHHHHHHHhhcCCCCH-HHHhHHHHHhcCCC--hhhhHHHHHHHHHh
Q 002971 13 DVVNCMQTENLELKKLVYLYLINYAKS-QPDLAILAVNTFVKDSQDPNP-LIRALAVRTMGCIR--VDKITEYLCDPLQR 88 (862)
Q Consensus 13 ~vv~l~~s~~~~~Kkl~Yl~l~~~~~~-~~el~~L~intl~kDl~~~n~-~ir~lALr~l~~i~--~~~~~~~l~~~v~~ 88 (862)
.+-.|..+...+.+-++..++..+.+. .++ .+-.+..+... -.|- .+-++|-+.++.+. .|+ .+.+.+.+
T Consensus 65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~-~l~~~~~~l~~--~~nWd~~D~~a~~~~g~~~~~~p~---~~~~~l~~ 138 (232)
T 3jxy_A 65 IIRELWDLPEREFQAAALDIMQKYKKHINET-HIPFLEELIVT--KSWWDSVDSIVPTFLGDIFLKHPE---LISAYIPK 138 (232)
T ss_dssp HHHHHHTSSBHHHHHHHHHHHHHTGGGCCGG-GHHHHHHHHTS--SCCHHHHHHHTTTHHHHHHHHCGG---GGGGTHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHcc--CCChHHHHHhhHHHHHHHHHHCHH---HHHHHHHH
Confidence 445678887777777777777654432 233 22223344442 3343 33344444444322 233 13345778
Q ss_pred hhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCccccc
Q 002971 89 CLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEIT 159 (862)
Q Consensus 89 ~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~ 159 (862)
-+.|.++++||.|+.+++..+. ..+. . .+...+..++.|.+.-|.-+.--+|.++.+.+|......+
T Consensus 139 W~~s~~~w~rR~ai~~~l~~~~-~~d~-~--~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl 205 (232)
T 3jxy_A 139 WIASDNIWLQRAAILFQLKYKQ-KMDE-E--LLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYV 205 (232)
T ss_dssp HHHSSCHHHHHHHHHTTTTCGG-GCCH-H--HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HhcCCchHHHHHHHHHHHHHHh-CCCH-H--HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 8889999999999988765432 2221 1 2567788889999999988888889999988776544443
No 139
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=66.98 E-value=27 Score=32.67 Aligned_cols=98 Identities=12% Similarity=0.111 Sum_probs=64.6
Q ss_pred HHHh-HhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---h----hhhH-HHH
Q 002971 12 TDVV-NCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---V----DKIT-EYL 82 (862)
Q Consensus 12 ~~vv-~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~---~----~~~~-~~l 82 (862)
-..| ++......+.---..+-++-....+++-..-++-.|+|=|+++||.++-+||..|-.+. . .+++ +.+
T Consensus 17 ~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~F 96 (163)
T 1x5b_A 17 EQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDF 96 (163)
T ss_dssp HHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHH
T ss_pred HHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Confidence 3444 44554445555555666777777777888889999999999999999988888764321 1 1222 344
Q ss_pred HHHHHhhhCC-CChHHHHHHHHHHHHHH
Q 002971 83 CDPLQRCLKD-DDPYVRKTAAICVAKLY 109 (862)
Q Consensus 83 ~~~v~~~l~d-~~~yVRk~A~~~l~kl~ 109 (862)
...+.+++.. .++-||+++...+..-.
T Consensus 97 l~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 97 ATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 4555555554 67889888877655443
No 140
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=66.85 E-value=20 Score=35.62 Aligned_cols=80 Identities=13% Similarity=0.108 Sum_probs=49.2
Q ss_pred CCCCHHHHhHHHHHhcCCC---hhhhHHHHHHHHHhhhC-CCChHHH-HHHHHHHHHHHhhccccccccchHHHHHHhhc
Q 002971 56 QDPNPLIRALAVRTMGCIR---VDKITEYLCDPLQRCLK-DDDPYVR-KTAAICVAKLYDINAELVEDRGFLESLKDLIS 130 (862)
Q Consensus 56 ~~~n~~ir~lALr~l~~i~---~~~~~~~l~~~v~~~l~-d~~~yVR-k~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~ 130 (862)
.++....|.+|+..+.... .++-.+.+ ...+. ..+.-|- --|...+.++++.+|+.+ .+.+.....
T Consensus 71 ~~~~~E~r~~ai~~l~~~~k~~~~~~l~~~----~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~~~-----~~~l~~W~~ 141 (232)
T 3jxy_A 71 DLPEREFQAAALDIMQKYKKHINETHIPFL----EELIVTKSWWDSVDSIVPTFLGDIFLKHPELI-----SAYIPKWIA 141 (232)
T ss_dssp TSSBHHHHHHHHHHHHHTGGGCCGGGHHHH----HHHHTSSCCHHHHHHHTTTHHHHHHHHCGGGG-----GGTHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhCCHHHHHHH----HHHHccCCChHHHHHhhHHHHHHHHHHCHHHH-----HHHHHHHhc
Confidence 3455668899988886331 23333333 23332 2455443 334456678888888733 245777888
Q ss_pred CCChhHHHHHHHHH
Q 002971 131 DNNPMVVANAVAAL 144 (862)
Q Consensus 131 d~d~~V~~~a~~~l 144 (862)
|.|+-+...|+..+
T Consensus 142 s~~~w~rR~ai~~~ 155 (232)
T 3jxy_A 142 SDNIWLQRAAILFQ 155 (232)
T ss_dssp SSCHHHHHHHHHTT
T ss_pred CCchHHHHHHHHHH
Confidence 99999988887665
No 141
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=66.26 E-value=71 Score=34.31 Aligned_cols=137 Identities=11% Similarity=0.229 Sum_probs=82.6
Q ss_pred HHHHHHHHhhhcch-hHHHHHHHHHHHHHhCc-ccHHHHHHHHHHhh---ccCC-chHHHHHHHHHHhhcccccCC-HHH
Q 002971 350 ISVLLELIKIKVNY-VVQEAIIVIKDIFRRYP-NTYESIIATLCESL---DTLD-EPEAKASMIWIIGEYAERIDN-ADE 422 (862)
Q Consensus 350 v~~ll~ll~~~~~~-v~~e~i~~l~~i~~~~p-~~~~~~i~~L~~~l---~~~~-~~~~~~~~~wilGEy~~~i~~-~~~ 422 (862)
-+.+.+++-....+ -..|....+..|+.... -+.+.-...+.+.+ ...+ .+.-..-+++++-.|.+.-+. +..
T Consensus 217 ~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~ 296 (392)
T 2jak_A 217 NNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP 296 (392)
T ss_dssp HHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHH
Confidence 34455555443332 34677888888888763 12222122222222 1111 111234566777777665433 568
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH---HHhcccCCCChHHHHHHHHHHH
Q 002971 423 LLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVV---LNNATVETDNPDLRDRAYIYWR 487 (862)
Q Consensus 423 ~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~~~~~~~~~i~~~---l~~~~~~s~~~dvrdRA~~y~~ 487 (862)
+++.+++.|+..++.-+...|.-+..+.-..+.++.+.....+ +..|. +|.+..|-+||..+|.
T Consensus 297 vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci-~S~hfqVAErAL~~wn 363 (392)
T 2jak_A 297 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCV-SSPHFQVAERALYYWN 363 (392)
T ss_dssp HHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH-TCSSHHHHHHHHGGGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHhC
Confidence 8899999998888777788888888888766543233333333 44565 5789999999999984
No 142
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=63.04 E-value=29 Score=32.43 Aligned_cols=65 Identities=11% Similarity=0.144 Sum_probs=43.9
Q ss_pred HHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCC
Q 002971 86 LQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR 153 (862)
Q Consensus 86 v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~ 153 (862)
|.++-.....-.--...+-+.-+.+..++-..+ .+..|++-|..+|+.|+..|+.+|..+.++ |+
T Consensus 20 IekATs~~~~~~Dw~~~leicD~I~~~~~~~ke--A~ral~krl~~~n~~vql~AL~LLd~~vkN-cG 84 (163)
T 1x5b_A 20 VEKATNEYNTTEDWSLIMDICDKVGSTPNGAKD--CLKAIMKRVNHKVPHVALQALTLLGACVAN-CG 84 (163)
T ss_dssp HHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHH--HHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-TC
T ss_pred HHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-hh
Confidence 444444332222344566777777777755443 677888889999999999999988777665 44
No 143
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=62.60 E-value=1.4e+02 Score=32.58 Aligned_cols=151 Identities=11% Similarity=0.238 Sum_probs=91.0
Q ss_pred HHHHHHHhhhcch-hHHHHHHHHHHHHHhCc-ccHHHHHHHHHHhh---ccCC-chHHHHHHHHHHhhcccccCC-HHHH
Q 002971 351 SVLLELIKIKVNY-VVQEAIIVIKDIFRRYP-NTYESIIATLCESL---DTLD-EPEAKASMIWIIGEYAERIDN-ADEL 423 (862)
Q Consensus 351 ~~ll~ll~~~~~~-v~~e~i~~l~~i~~~~p-~~~~~~i~~L~~~l---~~~~-~~~~~~~~~wilGEy~~~i~~-~~~~ 423 (862)
+.+.+++-....+ -..|....+..|+.... -+.+.-...+.+.| .... .+.-..-+++++-.|.+.-+. +..+
T Consensus 206 nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v 285 (449)
T 2npp_B 206 NIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV 285 (449)
T ss_dssp HHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHH
Confidence 4445554433322 34678888888887753 12222222222222 2211 122245677888887765443 6789
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHH---HHHHhcccCCCChHHHHHHHHHHH------HhcCCHH
Q 002971 424 LESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQ---VVLNNATVETDNPDLRDRAYIYWR------LLSTDPE 494 (862)
Q Consensus 424 l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~~~~~~~~~i~---~~l~~~~~~s~~~dvrdRA~~y~~------ll~~~~~ 494 (862)
++.+++.|+..++.-+...|.-+..+.-..+.++.+.... +.+..|. +|.+..|-+||..+|. +++.+.+
T Consensus 286 i~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci-~S~hfqVAErAL~~w~N~~i~~li~~n~~ 364 (449)
T 2npp_B 286 VMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCV-SSPHFQVAERALYYWNNEYIMSLISDNAA 364 (449)
T ss_dssp HHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH-TCSCHHHHHHHHGGGGCHHHHHHHHTTHH
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHCCHHHHHHHHhchh
Confidence 9999999999998888889998888887665432333333 3344465 5789999999999983 4454555
Q ss_pred HHHHhhcc
Q 002971 495 AAKDVVLA 502 (862)
Q Consensus 495 ~~~~~v~~ 502 (862)
....++++
T Consensus 365 ~IlPii~p 372 (449)
T 2npp_B 365 KILPIMFP 372 (449)
T ss_dssp HHHHHHHH
T ss_pred hhHHhhHH
Confidence 54444443
No 144
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=60.80 E-value=68 Score=29.38 Aligned_cols=99 Identities=12% Similarity=-0.004 Sum_probs=70.5
Q ss_pred HhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---h----hhhH-HHHHHHHH
Q 002971 16 NCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---V----DKIT-EYLCDPLQ 87 (862)
Q Consensus 16 ~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~---~----~~~~-~~l~~~v~ 87 (862)
++......+.---+.+-++-....+++-..-++-.|+|=++++||.+.-+||..|-.+. . .+++ +.+...+.
T Consensus 18 kATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~ 97 (149)
T 3g2s_A 18 RATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELI 97 (149)
T ss_dssp HHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHH
T ss_pred HHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHH
Confidence 45555555555667777888888888889999999999999999999999998765431 1 2222 34556677
Q ss_pred hhhCC------CChHHHHHHHHHHHHHHhhccc
Q 002971 88 RCLKD------DDPYVRKTAAICVAKLYDINAE 114 (862)
Q Consensus 88 ~~l~d------~~~yVRk~A~~~l~kl~~~~p~ 114 (862)
+++.+ .++-||++....+..-....|+
T Consensus 98 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 130 (149)
T 3g2s_A 98 KVVSPKYLGSRTSEKVKNKILELLYSWTVGLPE 130 (149)
T ss_dssp HHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHcccccCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 77764 5788999988777665554443
No 145
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=55.08 E-value=48 Score=30.36 Aligned_cols=51 Identities=10% Similarity=-0.063 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCC
Q 002971 100 TAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR 153 (862)
Q Consensus 100 ~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~ 153 (862)
.+.+-+.-+.+..|+... ..+..|.+-|..+||.|+..|+.+|..+.++ |+
T Consensus 20 ~~~leicD~I~~~~~~~k--~a~rai~krl~~~n~~vql~AL~LLe~~vkN-CG 70 (148)
T 1mhq_A 20 SAIQNFCEQVNTDPNGPT--HAPWLLAHKIQSPQEKEALYALTVLEMCMNH-CG 70 (148)
T ss_dssp HHHHHHHHHHHHSSHHHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-SC
T ss_pred HHHHHHHHHHHcCCccHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-cC
Confidence 556677777777765444 3667788888999999999999988777666 44
No 146
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=53.34 E-value=42 Score=30.43 Aligned_cols=52 Identities=13% Similarity=0.133 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCC
Q 002971 100 TAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP 154 (862)
Q Consensus 100 ~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~ 154 (862)
...+-+.-+.+..|+-.. +.+..|++-|..+||.|+..|+.+|..+.++ |+.
T Consensus 24 ~~ileicD~I~~~~~~~k--~a~rai~Krl~~~n~~~ql~AL~LLe~~vkN-cG~ 75 (140)
T 3ldz_A 24 GLILDICDKVGQSRTGPK--DCLRSIMRRVNHKDPHVAMQALTLLGACVSN-CGK 75 (140)
T ss_dssp HHHHHHHHHHTTSTTHHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-SCH
T ss_pred HHHHHHHHHHHCCCcCHH--HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-cCH
Confidence 456667777777665444 3667788888999999999999887665554 553
No 147
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=53.12 E-value=50 Score=31.08 Aligned_cols=65 Identities=12% Similarity=0.006 Sum_probs=45.5
Q ss_pred HHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhc
Q 002971 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (862)
Q Consensus 84 ~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 150 (862)
..|.++-.+...-.--...+.+.-+.+..++-..+ .+..|.+-|...|+.|+..|+.+|..+.++
T Consensus 16 ~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~--A~ral~krl~~~n~~vql~AL~LLd~~vkN 80 (171)
T 1juq_A 16 SWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQI--AVRLLAHKIQSPQEWEALQALTVLEACMKN 80 (171)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHH--HHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHH--HHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 33445544433223346677888888877765443 677888889999999999999988777665
No 148
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=52.30 E-value=68 Score=29.36 Aligned_cols=66 Identities=9% Similarity=-0.035 Sum_probs=44.4
Q ss_pred HHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCC
Q 002971 86 LQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP 154 (862)
Q Consensus 86 v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~ 154 (862)
|.++-....+----.+.+-+.-+.+..|+--. ..+..|.+-|..+||.|+..|+.+|..+.++ |+.
T Consensus 16 IekATs~~l~~~dw~~ileicD~I~~~~~~pk--~a~ral~krl~~~n~~v~l~AL~LLe~cvkN-CG~ 81 (149)
T 3g2s_A 16 INRATNPLNKELDWASINGFCEQLNEDFEGPP--LATRLLAHKIQSPQEWEAIQALTVLETCMKS-CGK 81 (149)
T ss_dssp HHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-CCH
T ss_pred HHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh-cCH
Confidence 34444333222234567777777777775444 3677888888999999999999988666655 553
No 149
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=51.59 E-value=79 Score=30.94 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=54.7
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---hh----hhH-HHHHHHHHhhhC-CCC
Q 002971 24 ELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---VD----KIT-EYLCDPLQRCLK-DDD 94 (862)
Q Consensus 24 ~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~---~~----~~~-~~l~~~v~~~l~-d~~ 94 (862)
+.---..+.+.-....+++-+.-++-.|+|=|+++||.++-+||..|-.+. .+ +++ +.+...+.+++. ..+
T Consensus 20 ~~dw~~~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~ 99 (220)
T 1dvp_A 20 EPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPH 99 (220)
T ss_dssp SCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSC
T ss_pred CcCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCc
Confidence 333334566666777777788889999999999999999999997776431 11 111 123334444443 366
Q ss_pred hHHHHHHHHHHHH
Q 002971 95 PYVRKTAAICVAK 107 (862)
Q Consensus 95 ~yVRk~A~~~l~k 107 (862)
+-||++++.-+..
T Consensus 100 ~~Vk~kil~li~~ 112 (220)
T 1dvp_A 100 ENVRQKMLELVQT 112 (220)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7888877654443
No 150
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=51.50 E-value=68 Score=29.32 Aligned_cols=89 Identities=10% Similarity=-0.010 Sum_probs=62.0
Q ss_pred CcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---h----hhhH-HHHHHHHHhhhCC-
Q 002971 22 NLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---V----DKIT-EYLCDPLQRCLKD- 92 (862)
Q Consensus 22 ~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~---~----~~~~-~~l~~~v~~~l~d- 92 (862)
..+.---+.+-++-....+++-..-++-.|+|=++++||.++-+||..|-.+. . .+++ +.++..+.+.+.+
T Consensus 14 l~~~dw~~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k 93 (148)
T 1mhq_A 14 MSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPK 93 (148)
T ss_dssp CSSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCS
T ss_pred CCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccc
Confidence 33344445566666677777888889999999999999999999998775431 1 2332 4556667777764
Q ss_pred -----CChHHHHHHHHHHHHHHh
Q 002971 93 -----DDPYVRKTAAICVAKLYD 110 (862)
Q Consensus 93 -----~~~yVRk~A~~~l~kl~~ 110 (862)
.++-||+++...+..-..
T Consensus 94 ~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 94 YLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp TTSCCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHH
Confidence 478899988776654443
No 151
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=48.31 E-value=5e+02 Score=32.52 Aligned_cols=57 Identities=9% Similarity=0.195 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCcccH---HHHHHHHHHhhccCCchHHHH
Q 002971 348 RCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTY---ESIIATLCESLDTLDEPEAKA 404 (862)
Q Consensus 348 ~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~---~~~i~~L~~~l~~~~~~~~~~ 404 (862)
..+..|+..+..+.+.-++.+..++..+.+.+|+.- ...+..+.++++++...+++.
T Consensus 438 eVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l~~~a~~l~giLD~l~~l~~~QiRk 497 (1323)
T 3s4w_B 438 EVVGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRLNAAFVKGILDYLENMSPQQIRK 497 (1323)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHGGGGGGGGCCHHHHHH
T ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHHhHHHHHHHHHHHhhcCCCHHHHHH
Confidence 344445554444444444556677777777777642 223555667777777777654
No 152
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=47.26 E-value=81 Score=29.58 Aligned_cols=98 Identities=8% Similarity=-0.008 Sum_probs=68.6
Q ss_pred HhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---hh----hhH-HHHHHHHH
Q 002971 16 NCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---VD----KIT-EYLCDPLQ 87 (862)
Q Consensus 16 ~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~---~~----~~~-~~l~~~v~ 87 (862)
++.+....+.---..+-++-....+++-..-++-.|+|=++++||.++-+||..|-.+. .. +++ +.+...+.
T Consensus 20 kATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~ 99 (171)
T 1juq_A 20 KATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELI 99 (171)
T ss_dssp HHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHH
T ss_pred HHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHH
Confidence 45555555555556677777777778888889999999999999999999998775432 11 222 34455667
Q ss_pred hhhCC------CChHHHHHHHHHHHHHHhhcc
Q 002971 88 RCLKD------DDPYVRKTAAICVAKLYDINA 113 (862)
Q Consensus 88 ~~l~d------~~~yVRk~A~~~l~kl~~~~p 113 (862)
+++.. .++-||++++..+..-....+
T Consensus 100 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 131 (171)
T 1juq_A 100 KVVSPKYLGDRVSEKVKTKVIELLYSWTMALP 131 (171)
T ss_dssp HHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHhccccCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 77652 578999998887776555443
No 153
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=45.08 E-value=27 Score=42.75 Aligned_cols=114 Identities=9% Similarity=0.033 Sum_probs=74.7
Q ss_pred HHhcCCCCcHHHHHHHHHHhhcCCCC-HHHHhHHHHHhcCC--Ch-h-hhHHHHHHHHHhhhCC------------CChH
Q 002971 34 INYAKSQPDLAILAVNTFVKDSQDPN-PLIRALAVRTMGCI--RV-D-KITEYLCDPLQRCLKD------------DDPY 96 (862)
Q Consensus 34 ~~~~~~~~el~~L~intl~kDl~~~n-~~ir~lALr~l~~i--~~-~-~~~~~l~~~v~~~l~d------------~~~y 96 (862)
.+++--.++.-..+.+.+.+-|.|++ ..||-.|-.+|+.+ +. + ...+.++...++.+.. ++--
T Consensus 831 ~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~ 910 (997)
T 1vsy_5 831 AELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDI 910 (997)
T ss_dssp HHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCH
T ss_pred HHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHH
Confidence 44444445544566788888899999 99999999999877 23 2 4444555555554422 1114
Q ss_pred HHHHHHHHHHHHHhhccccccccchHHHHHHhhcC--CChhHHHHH-HHHHHHH
Q 002971 97 VRKTAAICVAKLYDINAELVEDRGFLESLKDLISD--NNPMVVANA-VAALAEI 147 (862)
Q Consensus 97 VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d--~d~~V~~~a-~~~l~~i 147 (862)
.|=.|++++.-+..-.|-.++.+.|+|.+...|.. .||+.+..+ =.++.+.
T Consensus 911 ~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~i~~tvk~tlseF 964 (997)
T 1vsy_5 911 KIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGMTGNAAKNTISEF 964 (997)
T ss_dssp HHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSSHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 56778999999999999888544699887766653 345545433 3334443
No 154
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=44.33 E-value=1.1e+02 Score=36.49 Aligned_cols=72 Identities=18% Similarity=0.329 Sum_probs=59.7
Q ss_pred hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcc---ccccccchHHHHHHhhcC---CChhHHHHHHHHHHHHh
Q 002971 76 DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA---ELVEDRGFLESLKDLISD---NNPMVVANAVAALAEIE 148 (862)
Q Consensus 76 ~~~~~~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p---~~~~~~~~~~~l~~lL~d---~d~~V~~~a~~~l~~i~ 148 (862)
.++++.+.+.+..++-+++..|...+..|+..+....| +++-+ ..+++++..|.. ..+.=+.+|+.+|..++
T Consensus 334 ~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP-~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~ 411 (799)
T 1vsy_4 334 EEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYD-KILIDLYDTLADQFINSRHRIISSLKQFTRVI 411 (799)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHH-HHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehH-HHHHHHHHHhccccccchhHHHHHHHHHHHHH
Confidence 46778888999999999999999999999999999999 98864 578888888876 56666667777776654
No 155
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=43.54 E-value=30 Score=29.50 Aligned_cols=60 Identities=13% Similarity=0.164 Sum_probs=44.2
Q ss_pred CCeeEEEEEEEecCCCCcccceeeecccccCcccCCCCCCCcCCCCCeeeEEEeeeecCCCC
Q 002971 657 DGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMS 718 (862)
Q Consensus 657 ~~~~~l~l~~~N~s~~~it~f~~q~~~n~~gl~~~~~~~~~~l~pg~~~~~~i~i~~~~~~~ 718 (862)
+..+.+.+.|+|--+.++++-.+.+... |+.-......+.++||+..++.+.+....+..
T Consensus 19 ~~~l~v~vsf~NPL~~~L~~c~~~vEG~--GL~~~~~~~~~~v~pg~~~~~~~~~~P~~~G~ 78 (102)
T 2xzz_A 19 GQECEVQIVFKNPLPVTLTNVVFRLEGS--GLQRPKILNVGDIGGNETVTLRQSFVPVRPGP 78 (102)
T ss_dssp SSCEEEEEEEECCSSSCBCSEEEEEEET--TTEEEEEEEECCBCTTCEEEEEEEECCCSCSS
T ss_pred CCeEEEEEEEECCCCCcccCEEEEEECC--CCCcceEEEcCcCCCCCEEEEEEEEecCcccc
Confidence 4568999999999999999988777642 65333333467899999988888776555443
No 156
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=41.68 E-value=1.1e+02 Score=28.22 Aligned_cols=67 Identities=15% Similarity=0.115 Sum_probs=43.7
Q ss_pred HHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhc-CCChhHHHHHHHHHHHHhhcCCC
Q 002971 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLIS-DNNPMVVANAVAALAEIEENSSR 153 (862)
Q Consensus 84 ~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~-d~d~~V~~~a~~~l~~i~~~~~~ 153 (862)
..|.++-.+..+----...+-+.-+.+..++-..+ .+..|.+-|. ..|+.|+..|+.+|..+.++ |+
T Consensus 19 ~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~--a~ral~krl~~~~n~~v~l~AL~LLd~~vkN-cG 86 (157)
T 1elk_A 19 QRIEKATDGSLQSEDWALNMEICDIINETEEGPKD--ALRAVKKRIVGNKNFHEVMLALTVLETCVKN-CG 86 (157)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHH--HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-SC
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHH--HHHHHHHHhccCCCHHHHHHHHHHHHHHHHH-hC
Confidence 34445444432222345566677777776654443 6777888887 58999999999988777666 44
No 157
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Probab=39.07 E-value=69 Score=31.89 Aligned_cols=60 Identities=10% Similarity=0.190 Sum_probs=46.4
Q ss_pred HHhhhhccHHHHHHHHHHHHHHHHhh----hHhHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHH
Q 002971 317 KEYATEVDVDFVRKAVRAIGRCAIKL----ERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFR 377 (862)
Q Consensus 317 ~~y~~~~d~~~~~~~i~~I~~la~k~----~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~ 377 (862)
.+|+...+.+-+.+++..+..++.+. ...+..|+.++-+++..+.+|+..| +.+|..|+.
T Consensus 135 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Y~kvm~ki~~~g~~~~~~E-~~Rl~~~l~ 198 (240)
T 2qc7_A 135 GEFIRASGVEARQALLKQGQDNLSSVKETQKKWAEQYLKIMGKILDQGEDFPASE-MTRIARLIE 198 (240)
T ss_dssp HHHHHSCSHHHHHHHTTHHHHHTTCSCHHHHHHHHHHHHHHHHHHHSCTTSHHHH-HHHHHHHHH
T ss_pred HHHHhccchhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHh
Confidence 46777777777788877777776443 2567889999999999888898887 688888886
No 158
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=36.59 E-value=3.9e+02 Score=27.89 Aligned_cols=221 Identities=17% Similarity=0.204 Sum_probs=111.5
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccc--------cccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCC
Q 002971 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELV--------EDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (862)
Q Consensus 81 ~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~--------~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~ 152 (862)
.+...+...+..-+---||.++.....+.+..++.- .+.+++..|..--. ++-+..++=..|-|..++..
T Consensus 78 dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRecir~e~ 155 (341)
T 1upk_A 78 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECIRHEP 155 (341)
T ss_dssp SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHHTSHH
T ss_pred CHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHHHHHhHH
Confidence 455566777777788889999999888888654321 11122223222222 44444444445555544321
Q ss_pred CCcccccHHHHHHHHHHhccC------ChhHHHHHHHHHhhcccccH----HHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 002971 153 RPIFEITSHTLSKLLTALNEC------TEWGQVFILDALSRYKAADA----REAENIVERVTPRLQHANCAVVLSAVKMI 222 (862)
Q Consensus 153 ~~~~~l~~~~~~~Ll~~l~~~------~~w~q~~iL~~L~~~~~~~~----~~~~~il~~v~~~l~~~n~aV~~eai~~i 222 (862)
-..+-+..+.+.++.+.+... +-+..- =++|++...--. ...+.+......++++.|......+++++
T Consensus 156 la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tf--kelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLL 233 (341)
T 1upk_A 156 LAKIILWSEQFYDFFRYVEMSTFDIASDAFATF--KDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLL 233 (341)
T ss_dssp HHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHH--HHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHhcCCCchHHHHHHHHH--HHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 000000001111222211110 111111 111211110000 01123344455678999999999999998
Q ss_pred HHhhh----------ccCChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhChhhhhccceEEEecCCCcHH
Q 002971 223 LQQME----------LITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIY 291 (862)
Q Consensus 223 ~~~~~----------~~~~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p~~~~~~~~~~~~l~~d~~~ 291 (862)
..++- |+++++-++ .+..|| +++.+|||-|...+...+. +| +.|..
T Consensus 234 gelLldr~N~~vM~~Yis~~~nLk--------l~M~LL~d~sk~Iq~EAFhVFKvFVA-NP--------------~K~~~ 290 (341)
T 1upk_A 234 GELLLDRHNFTIMTKYISKPENLK--------LMMNLLRDKSRNIQFEAFHVFKVFVA-NP--------------NKTQP 290 (341)
T ss_dssp HHHHHSGGGHHHHHHHTTCHHHHH--------HHHHHTTCSCHHHHHHHHHHHHHHHH-CS--------------SCCHH
T ss_pred HHHHhCchHHHHHHHHhCCHHHHH--------HHHHHhcCchhchhhhhhhheeeeee-CC--------------CCChH
Confidence 87642 223333322 134667 5678999999888877765 33 22322
Q ss_pred HHHHHHHHHHHhcCcCcHHHHHHHHHHhhhhc--cHHHHHH---HHHHHHH
Q 002971 292 VKMEKLEIMIKLASDRNIDQVLLEFKEYATEV--DVDFVRK---AVRAIGR 337 (862)
Q Consensus 292 Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~--d~~~~~~---~i~~I~~ 337 (862)
| .++|.+ |=+.++.-|..|..+. |.+|..+ +|+.|..
T Consensus 291 I----~~IL~~-----Nr~kLl~fl~~f~~d~~eDeqF~dEK~~lI~~I~~ 332 (341)
T 1upk_A 291 I----LDILLK-----NQAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRD 332 (341)
T ss_dssp H----HHHHHH-----THHHHHHHHHHTTTTC-CCSHHHHHHHHHHHHHHT
T ss_pred H----HHHHHH-----HHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHHh
Confidence 2 234443 6666777777776654 6677665 5655543
No 159
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=34.32 E-value=2.2e+02 Score=25.03 Aligned_cols=32 Identities=3% Similarity=0.194 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhc
Q 002971 330 KAVRAIGRCAIKLERAAERCISVLLELIKIKV 361 (862)
Q Consensus 330 ~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~ 361 (862)
+.|..+...+..+...++.+++++.+-+....
T Consensus 22 ~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~ 53 (132)
T 4flb_A 22 ESIQGLSSWCIENKKHHSTIVYHWMKWLRRSA 53 (132)
T ss_dssp HHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC
Confidence 45555555555666666677777776666544
No 160
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=31.06 E-value=57 Score=35.97 Aligned_cols=59 Identities=14% Similarity=0.190 Sum_probs=47.9
Q ss_pred CChHHHHHHHHHHHHHHhhcccc---ccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcC
Q 002971 93 DDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (862)
Q Consensus 93 ~~~yVRk~A~~~l~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 151 (862)
.+|-+---|+.=+..+.+.+|+- +++-+.-+++.+|+.+.|+.|...|+.++..+..++
T Consensus 417 ~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~~ 478 (480)
T 1ho8_A 417 QEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYT 478 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHHS
T ss_pred CCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 46888888888889999999974 344456778889999999999999999998876543
No 161
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=30.56 E-value=1.1e+02 Score=26.62 Aligned_cols=67 Identities=15% Similarity=0.141 Sum_probs=42.3
Q ss_pred EEEEEEEecCCCCcccceeeecccccCcccCCCCCCCcCCCCCeeeEEEeeeecCCCCCCCCCcceEEEEe
Q 002971 661 FYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVK 731 (862)
Q Consensus 661 ~l~l~~~N~s~~~it~f~~q~~~n~~gl~~~~~~~~~~l~pg~~~~~~i~i~~~~~~~~~~~~~~l~~~~k 731 (862)
.+.+.+.||++.+ ..|.+.+... -|+..... ..-.++||+.....+.|.+........ ...+.|.+.
T Consensus 34 ~Ytlki~Nkt~~~-~~~~l~v~g~-~~l~~~g~-~~i~v~~g~~~~~~v~v~~~~~~~~~~-~~~i~f~v~ 100 (118)
T 2r39_A 34 TYTLKVINKTQQV-QEYNLDVKGL-NDVSWYGK-QTIQVEPGEVLNLPMSLGADPDKLNSA-ITTIQFILT 100 (118)
T ss_dssp EEEEEEEECSSSC-EEEEEEEESC-SSCEEESC-CEEEECTTCEEEEEEEEEECGGGCSSS-EEEEEEEEE
T ss_pred EEEEEEEECCCCC-EEEEEEEeCC-cccEEeCC-CcEEECCCCEEEEEEEEEEChHHccCC-ceeEEEEEE
Confidence 5889999999988 4577776532 24544331 113788999888888887765433221 224566665
No 162
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=29.29 E-value=1.9e+02 Score=28.43 Aligned_cols=73 Identities=11% Similarity=0.020 Sum_probs=49.2
Q ss_pred CCCcHHHHHHHHH----HHHHhc----CcCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH
Q 002971 286 YNDPIYVKMEKLE----IMIKLA----SDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELI 357 (862)
Q Consensus 286 ~~d~~~Ik~~~L~----lL~~l~----~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll 357 (862)
.+++.+.||-++. +|..+. ++.....+++.+...+.+.+.-++..+-.++..++.+.+.....++++.-.+-
T Consensus 118 ~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~~~~~al~~~~~l~ 197 (235)
T 1t06_A 118 ASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVPLHEKAVEIAKEVG 197 (235)
T ss_dssp HSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHC
T ss_pred cCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhc
Confidence 3678889999998 666544 34556666666655666666555555567888888887777777776555543
Q ss_pred h
Q 002971 358 K 358 (862)
Q Consensus 358 ~ 358 (862)
.
T Consensus 198 ~ 198 (235)
T 1t06_A 198 I 198 (235)
T ss_dssp E
T ss_pred c
Confidence 3
No 163
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=29.29 E-value=3.2e+02 Score=24.90 Aligned_cols=99 Identities=8% Similarity=-0.010 Sum_probs=62.5
Q ss_pred hHHHh-HhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcC-CCCHHHHhHHHHHhcCCC---h----hhhH-H
Q 002971 11 FTDVV-NCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQ-DPNPLIRALAVRTMGCIR---V----DKIT-E 80 (862)
Q Consensus 11 f~~vv-~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~-~~n~~ir~lALr~l~~i~---~----~~~~-~ 80 (862)
+-..| ++.+....+.---.-+-++-....+++-+.-++-.|+|=++ ++|+.++-+||..|-.+. . .+++ +
T Consensus 17 ~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~ 96 (157)
T 1elk_A 17 VGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQ 96 (157)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhH
Confidence 33444 44444444444555666666777777888899999999998 589999888888775321 1 1222 2
Q ss_pred HHHHH-HHhhhC---CCChHHHHHHHHHHHHHH
Q 002971 81 YLCDP-LQRCLK---DDDPYVRKTAAICVAKLY 109 (862)
Q Consensus 81 ~l~~~-v~~~l~---d~~~yVRk~A~~~l~kl~ 109 (862)
.+... +.+++. +++.-||+++...+..-.
T Consensus 97 ~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 97 DFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 34444 455553 345689998877665443
No 164
>3s51_A Protein FACI, fanconi anemia group I protein homolog; DNA repair, DNA binding protein; 3.30A {Mus musculus} PDB: 3s4z_A* 3s4w_A
Probab=28.01 E-value=3.7e+02 Score=33.44 Aligned_cols=242 Identities=10% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHhcCCCCcHHHHHHHHHHhhcCCCC---HHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCC-CChHHHHHHHHHHHH
Q 002971 32 YLINYAKSQPDLAILAVNTFVKDSQDPN---PLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD-DDPYVRKTAAICVAK 107 (862)
Q Consensus 32 ~l~~~~~~~~el~~L~intl~kDl~~~n---~~ir~lALr~l~~i~~~~~~~~l~~~v~~~l~d-~~~yVRk~A~~~l~k 107 (862)
.+........++..+....+.....+.+ +-+.-+|..-|-+-+.....+--.-.....+.- +...-.+-+..-+.+
T Consensus 349 Wlr~l~p~~~~v~~~ll~~V~~S~~g~d~Vv~gLV~LgF~LLds~~~k~~~~g~~~e~~~~~~~~p~q~a~~LG~~IL~~ 428 (1308)
T 3s51_A 349 FLQTLVPQRTCVSTMILEVVRNSVHSWDHVTQGLIEFGFILMDSYGPKKILDGKAVEIGTSLSKMTNQHACKLGANILLE 428 (1308)
T ss_dssp HHHHHSCCCCCHHHHHHHHHHHTTTTCCTTHHHHHHHHHHHHHHHSCCTTSCC---------CTHHHHHHHHHHHHHHHH
T ss_pred HHHhccCccchHHHHHHHHHhcCcccchhhHHHHHHHHHHHHhccCccccCCCcccccccccccChHHHHHHHHHHHHHH
Q ss_pred HHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHhccCChhHHHHHHHHHhh
Q 002971 108 LYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSR 187 (862)
Q Consensus 108 l~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~~~~Ll~~l~~~~~w~q~~iL~~L~~ 187 (862)
+|+.++....+ +++.+..-+-.....-+...+-+|..|+...|-...+.. .+..++..+.....-.-..+++.+.=
T Consensus 429 ~Fk~h~~~r~~--Iieqi~~RIv~~~~~~~s~~idlLs~lv~~~p~~l~e~s--kl~e~~dyl~~lp~~~a~~Ll~al~P 504 (1308)
T 3s51_A 429 TFKIHEMIRQE--ILEQVLNRVVTRTSSPINHFLDLFSDIIMYAPLILQNCS--KVTETFDYLTFLPLQTVQGLLKAVQP 504 (1308)
T ss_dssp HHHHCGGGHHH--HHHHHHHHHHHCCSSCCHHHHHHHHHHHHHCHHHHSSCH--HHHGGGGGTTTSCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHH--HHHHHHHHHHhccCcchhHHHHHHHHHHHhccHHHHhhh--HHHHHHHHHhcCCHHHHHHHHHHHhH
Q ss_pred cccccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhccC---------------------------ChHHHHHHHH
Q 002971 188 YKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELIT---------------------------STDVVRNLCK 240 (862)
Q Consensus 188 ~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~~---------------------------~~~~~~~~~~ 240 (862)
+..-+..-...++-.+...+-++....+..|+..|+.++.... ++..-+.++-
T Consensus 505 Lik~s~~lrD~lIlvLRKamf~re~~~R~~AV~GfL~lLk~~~~~~~~sSsq~sQs~~~sQ~~~~~~~~~~~~~Ne~l~l 584 (1308)
T 3s51_A 505 LLKISMSMRDSLILVLRKAMFASQLDARKSAVAGFLLLLKNFKVLGSLPSSQCTQSIGVTQVRVDVHSRYSAVANETFCL 584 (1308)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHEECCTTCC---------CCCEESSSCSSSCSSCCTTHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcccccccchhhhhhhhhhhhhhcccccccccchhHHHH
Q ss_pred hcccchhhcccCChhHHHHHHHHHHHHHhhChhhhhc
Q 002971 241 KMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAH 277 (862)
Q Consensus 241 ~~~~~L~~lls~~~~iry~aL~~l~~i~~~~p~~~~~ 277 (862)
-+.+.|.+.++-..++|-.-...|..++..+|.+..+
T Consensus 585 EIlg~LRRcL~Qqa~VR~~LY~gl~~~v~~n~~l~~~ 621 (1308)
T 3s51_A 585 EIIDSLKRSLGQQADIRLMLYDGFYDVLRRNSQLASS 621 (1308)
T ss_dssp HHHHHHHGGGGSCHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHcChhhHHH
No 165
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=26.35 E-value=1.4e+02 Score=31.23 Aligned_cols=26 Identities=12% Similarity=0.204 Sum_probs=18.8
Q ss_pred EEEEEeeCCeeEEEEEEEecCCCCcc
Q 002971 650 GAELTRQDGQVFYSMLFENNTQTPLD 675 (862)
Q Consensus 650 ~~~~~~~~~~~~l~l~~~N~s~~~it 675 (862)
++.+.-.+..+.+.+.++|+++.++.
T Consensus 256 ~A~Y~vpgR~l~~~~~VtN~g~~pvr 281 (382)
T 1yew_A 256 DATYRVPGRAMRMKLTITNHGNSPIR 281 (382)
T ss_dssp EEEEESSCSEEEEEEEEEECSSSCEE
T ss_pred ccEEecCCcEEEEEEEEEcCCCCceE
Confidence 34444445678999999999987653
No 166
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=25.55 E-value=6.2e+02 Score=28.95 Aligned_cols=91 Identities=10% Similarity=0.040 Sum_probs=47.5
Q ss_pred CcHHHHHHHHHHh--hhhccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCcccHH
Q 002971 307 RNIDQVLLEFKEY--ATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYE 384 (862)
Q Consensus 307 ~Nv~~Iv~eL~~y--~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~ 384 (862)
.....+|.-++.+ -...+..|++.-+.=|+.++.-.+.....|+..|+.-+..... ....+=..++.|++-.|-...
T Consensus 132 ~~~~~LV~aIL~~~~W~~r~~~~v~~Y~~FL~~LvSa~~~yl~~vl~mLV~~F~~~~~-~~~~~H~~L~~Il~lvP~s~~ 210 (649)
T 3tj1_A 132 SRGTFLIQSIINFEKWWELPPHTLSKYIYFIKILCSSIPKWWQDVSMILVSCFILPIK-QTVCHHDMLKYFLRMIPSSMG 210 (649)
T ss_dssp GGGHHHHHHHHTCTTGGGSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHGGGSCHH-HHHHHHHHHHHHHHHCGGGHH
T ss_pred hhHHHHHHHHhCCchhccCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCCc-ccHHHHHHHHHHHHHcCCCHH
Confidence 3455666666554 1234667777777777777665555544555554444432211 111122245666666666665
Q ss_pred HHHHHHHHhhccCC
Q 002971 385 SIIATLCESLDTLD 398 (862)
Q Consensus 385 ~~i~~L~~~l~~~~ 398 (862)
.+...|.+.+....
T Consensus 211 ~L~~iL~~~FP~~~ 224 (649)
T 3tj1_A 211 FIDTYLAKFFPNKN 224 (649)
T ss_dssp HHHHHHHHTCCCTT
T ss_pred HHHHHHHHhCCCCC
Confidence 55555555554333
No 167
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Probab=25.49 E-value=1.9e+02 Score=28.84 Aligned_cols=59 Identities=12% Similarity=0.177 Sum_probs=41.4
Q ss_pred HhhhhccHHHHHHHHHHHHHHHHhh-----hHhHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHh
Q 002971 318 EYATEVDVDFVRKAVRAIGRCAIKL-----ERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRR 378 (862)
Q Consensus 318 ~y~~~~d~~~~~~~i~~I~~la~k~-----~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~ 378 (862)
+|+...+.+. .+++..+...+.+. ...+..|+.++-+++..+.+|+..| +.+|..|+.+
T Consensus 150 ~f~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~a~~Y~kvm~ki~~~g~~~~~~E-~~Rl~~~l~~ 213 (248)
T 2c0g_A 150 NYANIPDAEQ-LKLIEKLQAKQEQLTDPEQQQNARAYLIYMRKIHEVGYDFLEEE-TKRLLRLKAG 213 (248)
T ss_dssp TGGGSCHHHH-HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHCTHHHHHH-HHHHHHHHTS
T ss_pred HHhcccchhH-HHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHhc
Confidence 5655544333 55666666655554 3567899999999999888898887 6788888743
No 168
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=24.88 E-value=5.2e+02 Score=25.64 Aligned_cols=48 Identities=23% Similarity=0.212 Sum_probs=32.1
Q ss_pred HHHHHHhhccc-ccCC---HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhc
Q 002971 405 SMIWIIGEYAE-RIDN---ADELLESFLESFPEEPAQVQLQLLTATVKLFLK 452 (862)
Q Consensus 405 ~~~wilGEy~~-~i~~---~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~ 452 (862)
..+-+|||--. .+-. ..+++..++.+..+++-+.=+.+|+.+.+.+-.
T Consensus 148 g~i~FIgeLy~~~~l~~~i~~~~l~~Ll~~~~e~~iE~l~~lL~tvG~~L~~ 199 (260)
T 1hu3_A 148 GNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDEESLECLCRLLTTIGKDLDF 199 (260)
T ss_dssp HHHHHHHHHHTTTCSCHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 45677888432 2222 346777788777666677777788888888765
No 169
>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E*
Probab=24.73 E-value=3.2e+02 Score=23.21 Aligned_cols=38 Identities=16% Similarity=0.387 Sum_probs=30.1
Q ss_pred ceEEEEEEEe-eCCeeEEEEEEEecCCCCcccceeeecc
Q 002971 646 GLQIGAELTR-QDGQVFYSMLFENNTQTPLDGFMIQFNK 683 (862)
Q Consensus 646 gL~I~~~~~~-~~~~~~l~l~~~N~s~~~it~f~~q~~~ 683 (862)
|..+.|+... .++...-+++++|.+..++++.++.+.-
T Consensus 2 gc~v~y~v~~~W~~Gf~~~vtVtN~g~~~i~gWtv~~~~ 40 (107)
T 3ndz_E 2 AVEVTYAITNSWGSGASVNVTIKNNGTTPINGWTLKWTM 40 (107)
T ss_dssp CEEEEEEEEEECSSEEEEEEEEEECSSSCEESCEEEEEC
T ss_pred ccEEEEEEcccCCCCEEEEEEEEeCCCCcccCcEEEEEc
Confidence 5677777644 4666789999999999999999988763
No 170
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=22.88 E-value=4.6e+02 Score=26.95 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=18.6
Q ss_pred CCChHHHHHHHHHHHHHHhhcccccc
Q 002971 92 DDDPYVRKTAAICVAKLYDINAELVE 117 (862)
Q Consensus 92 d~~~yVRk~A~~~l~kl~~~~p~~~~ 117 (862)
...+-+|..|+..+.-+.|-+|..+.
T Consensus 81 ~~~~~~rE~aarII~ssLRNNP~Al~ 106 (315)
T 3qml_C 81 NLPLTLRELSTRVITSCLRNNPPVVE 106 (315)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCChhHHHHHHHHHHHHHccCHHHHH
Confidence 34556788888888888888876554
No 171
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=21.42 E-value=5.3e+02 Score=24.53 Aligned_cols=118 Identities=12% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHhcCcCcHHHHHHHHHHhhhh------ccHHHHHHHHHHHHHHHHh----hhHhHHHHHHHHHHHH---hhhcchh
Q 002971 298 EIMIKLASDRNIDQVLLEFKEYATE------VDVDFVRKAVRAIGRCAIK----LERAAERCISVLLELI---KIKVNYV 364 (862)
Q Consensus 298 ~lL~~l~~~~Nv~~Iv~eL~~y~~~------~d~~~~~~~i~~I~~la~k----~~~~~~~~v~~ll~ll---~~~~~~v 364 (862)
+.|..|.++.-+..++..+..|+.+ .|...-..+++.+..+... .++.....+..++.++ +.+...+
T Consensus 27 ~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~L 106 (196)
T 4atg_A 27 IAIECLEKESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDV 106 (196)
T ss_dssp HHHHHHHHCSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHH
T ss_pred HHHHHHhcCCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHH
Q ss_pred HHHHHHHHHHHHHh----CcccHHHHHHHHHHhhccCCchHH-HHHHHHHHhhccc
Q 002971 365 VQEAIIVIKDIFRR----YPNTYESIIATLCESLDTLDEPEA-KASMIWIIGEYAE 415 (862)
Q Consensus 365 ~~e~i~~l~~i~~~----~p~~~~~~i~~L~~~l~~~~~~~~-~~~~~wilGEy~~ 415 (862)
.+.+...+..|+++ ||.++..+...+.+.+-+-..|-. +-.+++-+++.|.
T Consensus 107 Rd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~ 162 (196)
T 4atg_A 107 RKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK 162 (196)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH
No 172
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.15 E-value=76 Score=26.96 Aligned_cols=57 Identities=9% Similarity=0.106 Sum_probs=32.1
Q ss_pred eeCCeeEEEEEEEecCCCCcccceeeecccccC--cccCCCCCCCcCCCCCeeeEEEeeeec
Q 002971 655 RQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFG--LAAGGALQVPQLQPGTSGRTLLPMVLF 714 (862)
Q Consensus 655 ~~~~~~~l~l~~~N~s~~~it~f~~q~~~n~~g--l~~~~~~~~~~l~pg~~~~~~i~i~~~ 714 (862)
..+......++++|+++.++. |++.-....++ +.. .+.-..|+||++....+.+...
T Consensus 23 ~~g~~~~~~~~l~N~g~~p~~-~~~~~~~~~~~~~f~v--~p~~g~i~pg~~~~i~V~f~~~ 81 (112)
T 2e6j_A 23 FTGSAHCYEAILYNKGSIDAL-FNMTPPTSALGACFVF--SPKEGIIEPSGVQAIQISFSSI 81 (112)
T ss_dssp ESSCCEEEEEEEEECCSSCEE-EEECCCSSHHHHHCEE--ESSEEEECTTBCCEEEEEECCC
T ss_pred EECCEEEEEEEEEECCcceEE-EEEecCCccccCcEEE--ECCcCEECCCCEEEEEEEEECC
Confidence 345556788999999887654 22211111112 111 2334488999987776665444
No 173
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=21.12 E-value=1.7e+02 Score=31.13 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=18.9
Q ss_pred EEEEEeeCCeeEEEEEEEecCCCCc
Q 002971 650 GAELTRQDGQVFYSMLFENNTQTPL 674 (862)
Q Consensus 650 ~~~~~~~~~~~~l~l~~~N~s~~~i 674 (862)
++.|.-.+..+.+.++++|+++.++
T Consensus 290 ~A~Y~vpgR~l~~~~~VtN~g~~pv 314 (419)
T 3rfr_A 290 GGVYKVPGRELTINVKVKNGTSQPV 314 (419)
T ss_dssp EEEEESSSSEEEEEEEEECCSSSCB
T ss_pred ceEEecCCcEEEEEEEEecCCCCce
Confidence 3444445667899999999999775
No 174
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=20.80 E-value=4.6e+02 Score=23.51 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhc
Q 002971 327 FVRKAVRAIGRCAIKLERAAERCISVLLELIKIKV 361 (862)
Q Consensus 327 ~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~ 361 (862)
..+..|..+..+|...-..+..+++.+.+.+....
T Consensus 21 ~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~ 55 (145)
T 3d9j_A 21 ISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCK 55 (145)
T ss_dssp CCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34567777888887776677777777777666544
No 175
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=20.67 E-value=5.7e+02 Score=27.08 Aligned_cols=68 Identities=13% Similarity=0.124 Sum_probs=43.3
Q ss_pred ChhHHHHHHHHHHHHHhhChh---hhhc--cce-EEEecCCCcHHHHHHHHHHHHHhcCc---Cc-HHHHHHHHHHhh
Q 002971 253 EPEIQYVALRNINLIVQRRPT---ILAH--EIK-VFFCKYNDPIYVKMEKLEIMIKLASD---RN-IDQVLLEFKEYA 320 (862)
Q Consensus 253 ~~~iry~aL~~l~~i~~~~p~---~~~~--~~~-~~~~l~~d~~~Ik~~~L~lL~~l~~~---~N-v~~Iv~eL~~y~ 320 (862)
+.+++|.++++|..|...... ++.+ .+. +..|+.+..+.+|..++++|..+|.- .| .+.|++.+..|.
T Consensus 133 d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~ 210 (383)
T 3eg5_B 133 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERA 210 (383)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHH
Confidence 346777777777766543211 2221 122 33466677789999999999888753 45 777888776653
No 176
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=20.66 E-value=7.3e+02 Score=25.82 Aligned_cols=102 Identities=11% Similarity=0.181 Sum_probs=56.8
Q ss_pred hhCCCChHHHHHHHHHHHHHHhhccccccc------cchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccHHH
Q 002971 89 CLKDDDPYVRKTAAICVAKLYDINAELVED------RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHT 162 (862)
Q Consensus 89 ~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~------~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~~~ 162 (862)
-+..++=-|-.-|..++--++-.++.++.+ ..|.....+||...|.-+...++.+|.|+.-+.. .
T Consensus 172 yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~---------N 242 (341)
T 1upk_A 172 YVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRH---------N 242 (341)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGG---------G
T ss_pred HhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCch---------H
Confidence 333444445555555554444444433321 1355666777777787778888888877754321 0
Q ss_pred HHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 002971 163 LSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMIL 223 (862)
Q Consensus 163 ~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~ 223 (862)
. .+..+|.. +++. +..+..+|++.+..|.+||..++=
T Consensus 243 ~-------------------~vM~~Yis-~~~n----Lkl~M~LL~d~sk~Iq~EAFhVFK 279 (341)
T 1upk_A 243 F-------------------TIMTKYIS-KPEN----LKLMMNLLRDKSRNIQFEAFHVFK 279 (341)
T ss_dssp H-------------------HHHHHHTT-CHHH----HHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred H-------------------HHHHHHhC-CHHH----HHHHHHHhcCchhchhhhhhhhee
Confidence 1 22334432 2222 445566778888888888876543
No 177
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=20.58 E-value=2.5e+02 Score=27.22 Aligned_cols=50 Identities=12% Similarity=0.191 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcC
Q 002971 100 TAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (862)
Q Consensus 100 ~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 151 (862)
...+.+.-+.+..++... +.+..|.+-|..+|+.|+.-|+.+|..+.++-
T Consensus 24 ~~~leicd~i~~~~~~~k--~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNc 73 (220)
T 1dvp_A 24 PSILLICDEINQKDVTPK--NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNC 73 (220)
T ss_dssp HHHHHHHHHHHTTSSCHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhcCCCcCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc
Confidence 346667777777776444 36778888899999999999999998877763
No 178
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=20.27 E-value=9.8e+02 Score=28.01 Aligned_cols=74 Identities=12% Similarity=0.119 Sum_probs=53.1
Q ss_pred HHHHHhcCc--CcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhcchhHHHHHHHH
Q 002971 298 EIMIKLASD--RNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVI 372 (862)
Q Consensus 298 ~lL~~l~~~--~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l 372 (862)
.++.++++. .|++.-+.+|...+.+.....+..+++.+-.|+...|... -+..+++.++..+...+..+++..+
T Consensus 14 ~lI~rlge~~~~s~~~~l~~L~~~l~~~l~~~r~~i~~~l~~~~~~~P~Kt-~vyAaLVgllN~k~pe~G~~lv~~l 89 (771)
T 1h2v_C 14 SLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKL-TIYTTLVGLLNARNYNFGGEFVEAM 89 (771)
T ss_dssp HHHHTTTSSCSSCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHcCChhHHHHHHHHH
Confidence 467777763 5566777777777665556788888999999988887664 4557888899888766666655543
Done!