Your job contains 1 sequence.
>002972
MDALQVVSAATQIVTSMVGAVHALEQASRNLDEAPKRIRSLEDFVCDLENLMRRIKQKHA
YKLHNPQLDHQLKSLNSLIERLHPKIRKARRMVSKSKIKNLAHVVWTSMAGDPLRKLLNS
INDDLNWWLESQILAQNVEKVIELTAQEVPTRLKVKAEQGYPISSKSKFLRKLLEQEETH
QVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARK
ISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLYDND
CKYLVTTRNEAVYEITEAEKVELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGH
HPLTVAVMGKALRKELRSEKWEKAITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFS
LEAMPRDSRRLFIALAALSWAEPVPEACLEAIWSILVQKSLFSLAVCKLVEGSLLMKDDT
DPLYQVHDMVSLYLDSKTNDSIQMLINGLKAEEIAFICPWFLIFGKENIKNIAEEKVELS
LSVSEEKLVIITIEAILQALMASKSISELEVSRICFSGILGPRIADLISRDSQSLTVVSA
EAITNIFSKGDYCSYIPSLETTGAVDKLAGLLQKSEDPMIQTDILTVLTKLAEFGTPETV
DKVLQSIPFDKLATLLSYDAKEWHENMFTILMSLAKVGKSKAVEKMFAFEIDKNLIKLLE
NGSEVVQHHAIVTLKAFYELAGSPANASLRPANLNLLPWQVRLRLERFIISDRTVPPSPK
SQTFEDVIHRLLDGDNKQVQGATQDLIPFLEKAGGEPCIKKFLEYDIIPELVKMMQCCVP
EIQDSAYAAPDVLQQWWTTCLG
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002972
(862 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-000616-4 - symbol:apaf1 "apoptotic protease... 165 4.6e-08 1
UNIPROTKB|J9NS21 - symbol:APAF1 "Apoptotic protease-activ... 141 1.7e-05 1
UNIPROTKB|F1MUW4 - symbol:APAF1 "Uncharacterized protein"... 137 4.6e-05 1
TAIR|locus:2008510 - symbol:AT1G61190 "AT1G61190" species... 143 5.3e-05 2
TAIR|locus:504956483 - symbol:AT3G46730 species:3702 "Ara... 134 6.0e-05 1
TAIR|locus:2008440 - symbol:AT1G61180 species:3702 "Arabi... 140 9.2e-05 2
TAIR|locus:2197739 - symbol:AT1G61300 species:3702 "Arabi... 132 0.00017 2
RGD|620575 - symbol:Apaf1 "apoptotic peptidase activating... 131 0.00020 1
TAIR|locus:2175070 - symbol:AT5G41740 species:3702 "Arabi... 135 0.00025 2
UNIPROTKB|F1SQT5 - symbol:APAF1 "Uncharacterized protein"... 129 0.00033 1
MGI|MGI:1306796 - symbol:Apaf1 "apoptotic peptidase activ... 127 0.00054 1
UNIPROTKB|C9JLV4 - symbol:APAF1 "Apoptotic protease-activ... 126 0.00064 1
UNIPROTKB|O14727 - symbol:APAF1 "Apoptotic protease-activ... 126 0.00070 1
UNIPROTKB|E1BR73 - symbol:APAF1 "Uncharacterized protein"... 126 0.00070 1
UNIPROTKB|F1P1P3 - symbol:APAF1 "Uncharacterized protein"... 126 0.00070 1
UNIPROTKB|E1BS49 - symbol:APAF1 "Uncharacterized protein"... 126 0.00070 1
>ZFIN|ZDB-GENE-000616-4 [details] [associations]
symbol:apaf1 "apoptotic protease activating factor 1"
species:7955 "Danio rerio" [GO:0042981 "regulation of apoptotic
process" evidence=IEA] [GO:0006952 "defense response" evidence=IEA]
[GO:0043531 "ADP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008233
"peptidase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] InterPro:IPR017986 InterPro:IPR000767
InterPro:IPR001315 InterPro:IPR001680 InterPro:IPR002182
InterPro:IPR015943 Pfam:PF00400 Pfam:PF00619 Pfam:PF00931
PRINTS:PR00364 PROSITE:PS50082 PROSITE:PS50209 PROSITE:PS50294
SMART:SM00114 SMART:SM00320 ZFIN:ZDB-GENE-000616-4 GO:GO:0006952
GO:GO:0042981 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0043531
GO:GO:0005622 Gene3D:1.10.533.10 InterPro:IPR011029 SUPFAM:SSF47986
InterPro:IPR017251 PIRSF:PIRSF037646 GeneTree:ENSGT00700000104017
EMBL:CT868708 EMBL:CT025647 IPI:IPI00996819
Ensembl:ENSDART00000127261 Uniprot:E7F2V1
Length = 1264
Score = 165 (63.1 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 80/344 (23%), Positives = 148/344 (43%)
Query: 170 LRKLLEQ-EETHQVILIVGLSGIGKSCLARQVASDPP---ERFVGGAVELGFGQWCSRAA 225
+R++L + +T + + G++G GKS +A +V D E F G L GQ C RA
Sbjct: 137 IREMLYRLRDTPGWVTVFGMAGSGKSVMAAEVVRDRSLIKECFPDGVHWLSVGQ-CERAD 195
Query: 226 CNGSKSDYQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVW 285
RL + S Q +++ L +L +L+ + +S+LIL DDVW
Sbjct: 196 LLVRMQSLCFRLEQCQSSDTSQRPP-STVEEAKERLRFL--MLRR--FPRSLLIL-DDVW 249
Query: 286 EQDIVERFAKLYDNDCKYLVTTRNEAVYEITEAEKVELSKDDIMEISKS--ILLYHXXXX 343
+ + F D C+ L+TTRN A+ + + E+ ++ ++ K+ IL +
Sbjct: 250 DSSSLRSF----DIQCRVLLTTRNRALTDSVSGVRYEVPVENGLDEEKALEILALYVNGK 305
Query: 344 XXXXXXXXXXXXXRCGHHPLTVAVMGKALRKELRSEKWEKAITDLSTFATCAPGPVSYVN 403
C PL V+++G AL +E ++W + L +
Sbjct: 306 MHKLPEQARSIVSECKGSPLVVSLIG-ALLREF-PDRWSYYLRQLQQ------KQFKRIR 357
Query: 404 EKEAENTLTIFGSFEFSLEAMPRDSRRLFIALAALSWAEPVPEACLEAIWSILVQKSLFS 463
+ + + + + + SL+ + + + L+ L+ + VP L +W + +++
Sbjct: 358 KSSSYDYEALDQAMDASLQVLEAEHQELYRDLSVMQKDIKVPAKVLSVLWGLELEEVEDV 417
Query: 464 LAVCKLVEGSLLMKD-DTDPL-YQVHDMVSLYLDSKTNDSIQML 505
L + V SLL +D + P Y +HD+ +L + D I L
Sbjct: 418 LQ--EFVNKSLLFRDCNQRPYRYYLHDLQLDFLAEQNRDQIAEL 459
>UNIPROTKB|J9NS21 [details] [associations]
symbol:APAF1 "Apoptotic protease-activating factor 1"
species:9615 "Canis lupus familiaris" [GO:0043531 "ADP binding"
evidence=IEA] [GO:0042981 "regulation of apoptotic process"
evidence=IEA] [GO:0006952 "defense response" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR017986
InterPro:IPR000767 InterPro:IPR001315 InterPro:IPR001680
InterPro:IPR002182 InterPro:IPR015943 Pfam:PF00400 Pfam:PF00619
Pfam:PF00931 PRINTS:PR00364 PROSITE:PS50082 PROSITE:PS50209
PROSITE:PS50294 SMART:SM00320 GO:GO:0006952 GO:GO:0042981
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0043531
GO:GO:0005622 Gene3D:1.10.533.10 InterPro:IPR011029 SUPFAM:SSF47986
CTD:317 KO:K02084 InterPro:IPR017251 PIRSF:PIRSF037646
GeneTree:ENSGT00700000104017 EMBL:AAEX03009966
RefSeq:XP_003432082.1 ProteinModelPortal:J9NS21
Ensembl:ENSCAFT00000049144 GeneID:482620 KEGG:cfa:482620
Uniprot:J9NS21
Length = 1250
Score = 141 (54.7 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 75/327 (22%), Positives = 130/327 (39%)
Query: 183 ILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKIS 242
++I G++G GKS LA + D F+ G G W S K+ +L +
Sbjct: 151 VVIYGMAGCGKSVLAAEAVRD--HFFLDGCFPGGV-HWVSVG--KQDKAGLLMKLQNLCT 205
Query: 243 KFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLYDNDCK 302
+ F ++ + + LL + +S+LIL DD+W+ I+ K +DN C+
Sbjct: 206 RLDQDENFSQRPPLNIEEAKDRLRLLMLRKHPRSLLIL-DDIWDSWIL----KAFDNQCQ 260
Query: 303 YLVTTRNEAVYEITEAEK--VELSKDDIMEISKSILLYHXXXXXXXXXXXXXXXXXRCGH 360
L+TTR+++V + K V + D E IL C
Sbjct: 261 ILLTTRDKSVTDSVMGPKYIVAVESDLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKG 320
Query: 361 HPLTVAVMGKALRKELRSEKWEKAITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFS 420
PL V+++G LR +W+ + L S+ + + + ++I S
Sbjct: 321 SPLVVSLIGALLRDF--PNRWDYYLRQLQNKQFKRIRKSSFYDYEALDEAMSI------S 372
Query: 421 LEAMPRDSRRLFIALAALSWAEPVPEACLEAIWSILVQKSLFSLAVCKLVEGSLLMKDDT 480
+E + D + + L+ L VP L +W + ++ L + V SLL D
Sbjct: 373 VEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQ--EFVNKSLLFCDRN 430
Query: 481 DPL--YQVHDMVSLYLDSKTNDSIQML 505
Y +HD+ +L K + +Q L
Sbjct: 431 GKSFRYYLHDLQVDFLIEKNRNQLQDL 457
>UNIPROTKB|F1MUW4 [details] [associations]
symbol:APAF1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051402 "neuron apoptotic process" evidence=IEA]
[GO:0042802 "identical protein binding" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0016505 "apoptotic
protease activator activity" evidence=IEA] [GO:0008635 "activation
of cysteine-type endopeptidase activity involved in apoptotic
process by cytochrome c" evidence=IEA] [GO:0006309 "apoptotic DNA
fragmentation" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0001843 "neural tube closure" evidence=IEA]
[GO:0043531 "ADP binding" evidence=IEA] [GO:0006952 "defense
response" evidence=IEA] InterPro:IPR017986 InterPro:IPR000767
InterPro:IPR001315 InterPro:IPR001680 InterPro:IPR002182
InterPro:IPR015943 Pfam:PF00400 Pfam:PF00619 Pfam:PF00931
PRINTS:PR00364 PROSITE:PS50082 PROSITE:PS50209 PROSITE:PS50294
SMART:SM00320 GO:GO:0005634 GO:GO:0005794 GO:GO:0006952
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0030900
GO:GO:0051402 GO:GO:0043531 GO:GO:0001843 GO:GO:0006309
GO:GO:0008635 Gene3D:1.10.533.10 InterPro:IPR011029 SUPFAM:SSF47986
GO:GO:0043293 GO:GO:0016505 OMA:KVCKNSA InterPro:IPR017251
PIRSF:PIRSF037646 GeneTree:ENSGT00700000104017 EMBL:DAAA02013647
EMBL:DAAA02013645 EMBL:DAAA02013646 IPI:IPI00689090
Ensembl:ENSBTAT00000028867 Uniprot:F1MUW4
Length = 1251
Score = 137 (53.3 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 71/327 (21%), Positives = 127/327 (38%)
Query: 183 ILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKIS 242
+ I G++G GKS LA + D F+ G W S KS +L +
Sbjct: 152 VTIYGMAGCGKSVLAAEAVRD--HSFLEDCFPGGV-HWVSVG--KQDKSGLLMKLQNLCA 206
Query: 243 KFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLYDNDCK 302
+ F +++ + + +L + +S+LIL DD+W+ ++ K +DN C+
Sbjct: 207 RLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLIL-DDIWDPWVL----KAFDNQCQ 261
Query: 303 YLVTTRNEAVYEITEAEKVELSKDDIMEISKS--ILLYHXXXXXXXXXXXXXXXXXRCGH 360
L+TTR+++V + K + + + K IL C
Sbjct: 262 ILLTTRDKSVTDSVMGPKYVVPVESGLGKEKGLEILSLFVNMKKADLPEQAHSIIQECKG 321
Query: 361 HPLTVAVMGKALRKELRSEKWEKAITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFS 420
PL V+++G LR +WE + L + + + + + + S
Sbjct: 322 SPLVVSLIGALLRDF--PNRWEYYLRQLQN------KQFKRIRKSSSYDYEALDEAMSIS 373
Query: 421 LEAMPRDSRRLFIALAALSWAEPVPEACLEAIWSILVQKSLFSLAVCKLVEGSLLMKDDT 480
+E + D + + L+ L VP L +W + ++ L + V SLL D
Sbjct: 374 VEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDLETEEVEDILQ--EFVNKSLLFCDRN 431
Query: 481 DP--LYQVHDMVSLYLDSKTNDSIQML 505
LY +HD+ +L K +Q L
Sbjct: 432 GKSFLYYLHDLQVDFLAEKNRSQLQDL 458
>TAIR|locus:2008510 [details] [associations]
symbol:AT1G61190 "AT1G61190" species:3702 "Arabidopsis
thaliana" [GO:0005575 "cellular_component" evidence=ND] [GO:0006952
"defense response" evidence=IEA;ISS] [GO:0043531 "ADP binding"
evidence=IEA] InterPro:IPR000767 InterPro:IPR002182 Pfam:PF00931
PRINTS:PR00364 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005524 GO:GO:0006952 GO:GO:0043531 HOGENOM:HOG000238348
EMBL:AC002294 IPI:IPI00531576 PIR:G96637 RefSeq:NP_176314.1
UniGene:At.36514 UniGene:At.71478 ProteinModelPortal:O22727
SMR:O22727 PaxDb:O22727 PRIDE:O22727 EnsemblPlants:AT1G61190.1
GeneID:842412 KEGG:ath:AT1G61190 TAIR:At1g61190 eggNOG:NOG249426
InParanoid:O22727 OMA:FQQKAFN PhylomeDB:O22727
ProtClustDB:CLSN2681834 Genevestigator:O22727 GermOnline:AT1G61190
Uniprot:O22727
Length = 967
Score = 143 (55.4 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 60/253 (23%), Positives = 114/253 (45%)
Query: 150 PTRLKVKAEQGYPISSKSKFLRKLLEQ--EETHQVILIVGLSGIGKSCLARQVASDPPER 207
P R +V+ P + + L+K + E+ ++ + G+ G+GK+ L +++ + E
Sbjct: 141 PPRSEVEERPTQPTIGQEEMLKKAWNRLMEDGVGIMGLHGMGGVGKTTLFKKIHNKFAE- 199
Query: 208 FVGGAVELGFGQWCSRAACNGSK-SDYQKRLARKISKFLVQIGFWKKIKDENSDLEYLCC 266
GG ++ W G+K S Q+ +A K+ L WK K+E SD
Sbjct: 200 -TGGTFDIVI--WI--VVSQGAKLSKLQEDIAEKLH--LCD-DLWKN-KNE-SDK---AT 246
Query: 267 LLQEALYGKSILILLDDVWEQDIVERFAKLYD---NDCKYLVTTRNEAVY-EITEAEKVE 322
+ L GK +++LDD+WE+ +E Y N CK TTR++ V ++ + + ++
Sbjct: 247 DIHRVLKGKRFVLMLDDIWEKVDLEAIGIPYPSEVNKCKVAFTTRDQKVCGQMGDHKPMQ 306
Query: 323 ---LSKDDIMEISKSILLYHXXXXXXXXXXXXXXXXXRCGHHPLTVAVMGKALRKELRSE 379
L +D E+ K+ + + +C PL ++ +G+ + + +
Sbjct: 307 VKCLEPEDAWELFKNKVGDNTLRSDPVIVGLAREVAQKCRGLPLALSCIGETMASKTMVQ 366
Query: 380 KWEKAITDLSTFA 392
+WE AI L+ A
Sbjct: 367 EWEHAIDVLTRSA 379
Score = 42 (19.8 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 38/157 (24%), Positives = 66/157 (42%)
Query: 468 KLVEGSLLMKDDTDPL-YQVHDMVSL-YLDSKTNDSIQMLINGLKA-EEIAFICPWFLIF 524
KLV L D + L Q+ +VSL YLD I+ L GLK +++ F+ L F
Sbjct: 562 KLVVLDLSHNPDFNELPEQISGLVSLQYLDLSWT-RIEQLPVGLKELKKLIFLN---LCF 617
Query: 525 GKENIKNIAXXXXXXXXXXXXXXXXIITIEA-ILQALMASKSISELEVSRICFSGILGPR 583
E + +I+ + +A +L+ L +++ +L ++
Sbjct: 618 -TERLCSISGISRLLSLRWLSLRESNVHGDASVLKELQQLENLQDLRITES--------- 667
Query: 584 IADLISRDSQSLTVVSAEAITNIFSKGDYCSYIPSLE 620
A+LIS D + ++S I K S++ S+E
Sbjct: 668 -AELISLDQRLAKLISVLRIEGFLQKPFDLSFLASME 703
>TAIR|locus:504956483 [details] [associations]
symbol:AT3G46730 species:3702 "Arabidopsis thaliana"
[GO:0006952 "defense response" evidence=IEA;ISS] [GO:0043531 "ADP
binding" evidence=IEA] InterPro:IPR000767 InterPro:IPR002182
Pfam:PF00931 PRINTS:PR00364 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006952 GO:GO:0043531 EMBL:AL096859
HOGENOM:HOG000237753 ProtClustDB:CLSN2684836 IPI:IPI00520859
PIR:T12977 RefSeq:NP_190257.1 UniGene:At.65257
ProteinModelPortal:Q9STE7 SMR:Q9STE7 PaxDb:Q9STE7 PRIDE:Q9STE7
EnsemblPlants:AT3G46730.1 GeneID:823826 KEGG:ath:AT3G46730
TAIR:At3g46730 eggNOG:NOG270317 InParanoid:Q9STE7 OMA:WHEVCAS
PhylomeDB:Q9STE7 Genevestigator:Q9STE7 GermOnline:AT3G46730
Uniprot:Q9STE7
Length = 847
Score = 134 (52.2 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 65/235 (27%), Positives = 108/235 (45%)
Query: 170 LRKLLEQEETHQ--VILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACN 227
L KLL E + +I I G+ G+GK+ LAR++ + G V+ F C RA
Sbjct: 173 LVKLLSDNEKDKSYIISIFGMGGLGKTALARKL-------YNSGDVKRRFD--C-RAWTY 222
Query: 228 GSKSDYQKR--LARKISKF-LVQIGFWKKIK--DENSDLE-YLCCLLQEALYGKSILILL 281
S+ +Y+ R L R I +V +KIK +E+ +LE YL LL+ GK+ ++++
Sbjct: 223 VSQ-EYKTRDILIRIIRSLGIVSAEEMEKIKMFEEDEELEVYLYGLLE----GKNYMVVV 277
Query: 282 DDVWEQDIVERFAKLYDND---CKYLVTTRNEAVYEITE----AEKVE-LSKDDIMEISK 333
DDVW+ D E + D K ++TTR A+ E E A K+ L+ ++ + +
Sbjct: 278 DDVWDPDAWESLKRALPCDHRGSKVIITTRIRAIAEGVEGTVYAHKLRFLTFEESWTLFE 337
Query: 334 SILLYHXXXXXXXXXXXXXXXXXRCGHHPLTVAVMGKALRKELRSEKWEKAITDL 388
+ +CG PL + V+ L ++ R+ +W + L
Sbjct: 338 RKAFSNIEKVDEDLQRTGKEMVKKCGGLPLAIVVLSGLLSRK-RTNEWHEVCASL 391
>TAIR|locus:2008440 [details] [associations]
symbol:AT1G61180 species:3702 "Arabidopsis thaliana"
[GO:0005886 "plasma membrane" evidence=ISM;IDA] [GO:0006952
"defense response" evidence=IEA;ISS] [GO:0043531 "ADP binding"
evidence=IEA] InterPro:IPR000767 InterPro:IPR002182 Pfam:PF00931
PRINTS:PR00364 EMBL:CP002684 GO:GO:0005886 GO:GO:0006952
GO:GO:0043531 HOGENOM:HOG000238348 EMBL:AC002294
ProtClustDB:CLSN2681834 IPI:IPI00657523 RefSeq:NP_001031216.1
UniGene:At.21819 UniGene:At.67768 ProteinModelPortal:Q2V4G0
SMR:Q2V4G0 PRIDE:Q2V4G0 EnsemblPlants:AT1G61180.2 GeneID:842411
KEGG:ath:AT1G61180 OMA:WASATTI Genevestigator:Q2V4G0 Uniprot:Q2V4G0
Length = 899
Score = 140 (54.3 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 67/274 (24%), Positives = 120/274 (43%)
Query: 133 ILAQNVEKV-IELTAQEV---PTRLKVKAEQGYPISSKSKFLRKLLEQ--EETHQVILIV 186
+L + V+K+ E EV P R +V+ P + L K + E+ ++ +
Sbjct: 119 LLLEEVKKLNSEGNFDEVSQPPPRSEVEERPTQPTIGQEDMLEKAWNRLMEDGVGIMGLH 178
Query: 187 GLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSK-SDYQKRLARKISKFL 245
G+ G+GK+ L +++ + E +GG ++ W G S Q+ +A K+ L
Sbjct: 179 GMGGVGKTTLFKKIHNKFAE--IGGTFDIVI--WI--VVSKGVMISKLQEDIAEKLH--L 230
Query: 246 VQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLYD---NDCK 302
WK K+E SD + L GK +++LDD+WE+ +E Y N CK
Sbjct: 231 CD-DLWKN-KNE-SDK---ATDIHRVLKGKRFVLMLDDIWEKVDLEAIGIPYPSEVNKCK 284
Query: 303 YLVTTRNEAVY-EITEAEKVE---LSKDDIMEISKSILLYHXXXXXXXXXXXXXXXXXRC 358
TTR+ V E+ + + ++ L +D E+ K+ + + +C
Sbjct: 285 VAFTTRSREVCGEMGDHKPMQVNCLEPEDAWELFKNKVGDNTLSSDPVIVELAREVAQKC 344
Query: 359 GHHPLTVAVMGKALRKELRSEKWEKAITDLSTFA 392
PL + V+G+ + + ++WE AI +T A
Sbjct: 345 RGLPLALNVIGETMSSKTMVQEWEHAIHVFNTSA 378
Score = 42 (19.8 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 36/161 (22%), Positives = 69/161 (42%)
Query: 468 KLVEGSLLMKDDTDPL-YQVHDMVSLYLDSKTNDSIQMLINGLKA-EEIAFICPWFLIFG 525
KLV L D + L Q+ +VSL +N SI+ + GLK +++ F+ L +
Sbjct: 558 KLVVLDLSYNRDFNKLPEQISGLVSLQFLDLSNTSIEHMPIGLKELKKLTFLD---LTY- 613
Query: 526 KENIKNIAXXXXXXXXXXXXXXXXIITIEA-ILQALMASKSISELEVSRICFSGILGPRI 584
+ + +I+ + +A +L+ L +++ EL ++ S
Sbjct: 614 TDRLCSISGISRLLSLRLLRLLGSKVHGDASVLKELQQLQNLQELAIT---VS------- 663
Query: 585 ADLISRDSQSLTVVSAEAITNIFSKGDYCSYIPSLETTGAV 625
A+LIS D + ++S I K S++ S+E ++
Sbjct: 664 AELISLDQRLAKLISNLCIEGFLQKPFDLSFLASMENLSSL 704
>TAIR|locus:2197739 [details] [associations]
symbol:AT1G61300 species:3702 "Arabidopsis thaliana"
[GO:0006952 "defense response" evidence=IEA;ISS] [GO:0043531 "ADP
binding" evidence=IEA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000767 InterPro:IPR002182 Pfam:PF00931 PRINTS:PR00364
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005886
GO:GO:0005524 GO:GO:0006952 GO:GO:0043531 EMBL:AC004255
HOGENOM:HOG000238348 ProtClustDB:CLSN2681834 EMBL:AK226587
EMBL:AY099608 EMBL:AY128858 IPI:IPI00535662 RefSeq:NP_176325.2
UniGene:At.36488 UniGene:At.74126 ProteinModelPortal:O64790
SMR:O64790 PaxDb:O64790 EnsemblPlants:AT1G61300.1 GeneID:842424
KEGG:ath:AT1G61300 TAIR:At1g61300 eggNOG:KOG4658 InParanoid:O64790
OMA:WITSEEN PhylomeDB:O64790 Genevestigator:O64790
GermOnline:AT1G61300 Uniprot:O64790
Length = 762
Score = 132 (51.5 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 57/241 (23%), Positives = 107/241 (44%)
Query: 162 PISSKSKFLRKLLEQ--EETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQ 219
P + + L K + E+ ++ + G+ G+GK+ L +++ + +F +
Sbjct: 41 PTIGQEEMLEKAWNRLMEDRVGIMGLHGMGGVGKTTLFKKIHN----KFAKMSSRFDIVI 96
Query: 220 WCSRAACNGSK-SDYQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSIL 278
W G+K S Q+ +A K+ L WK K+E SD + L GK +
Sbjct: 97 WI--VVSKGAKLSKLQEDIAEKLH--LCD-DLWKN-KNE-SDK---ATDIHRVLKGKRFV 146
Query: 279 ILLDDVWEQDIVERFAKLYD---NDCKYLVTTRNEAVY-EITEAEKVE---LSKDDIMEI 331
++LDD+WE+ +E Y N CK TTR++ V E+ + + ++ L +D E+
Sbjct: 147 LMLDDIWEKVDLEAIGVPYPSEVNKCKVAFTTRDQKVCGEMGDHKPMQVKCLEPEDAWEL 206
Query: 332 SKSILLYHXXXXXXXXXXXXXXXXXRCGHHPLTVAVMGKALRKELRSEKWEKAITDLSTF 391
K+ + + +C PL ++V+G+ + + ++WE AI L+
Sbjct: 207 FKNKVGDNTLRSDPVIVELAREVAQKCRGLPLALSVIGETMASKTMVQEWEHAIDVLTRS 266
Query: 392 A 392
A
Sbjct: 267 A 267
Score = 46 (21.3 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 468 KLVEGSLLMKDDTDPL-YQVHDMVSLYLDSKTNDSIQMLINGLKA-EEIAFI 517
KLV L D + L Q+ +VSL +N SI+ L GLK +++ F+
Sbjct: 447 KLVVLDLSYNRDFNKLPEQISGLVSLQFLDLSNTSIKQLPVGLKKLKKLTFL 498
>RGD|620575 [details] [associations]
symbol:Apaf1 "apoptotic peptidase activating factor 1"
species:10116 "Rattus norvegicus" [GO:0001666 "response to hypoxia"
evidence=IEP] [GO:0001843 "neural tube closure" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005794
"Golgi apparatus" evidence=ISO] [GO:0005829 "cytosol" evidence=ISO]
[GO:0006309 "apoptotic DNA fragmentation" evidence=ISO] [GO:0006917
"induction of apoptosis" evidence=IDA] [GO:0006919 "activation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=ISO] [GO:0006952 "defense response" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=ISO]
[GO:0007420 "brain development" evidence=ISO;IEP] [GO:0007568
"aging" evidence=IEP] [GO:0007584 "response to nutrient"
evidence=IEP] [GO:0008635 "activation of cysteine-type
endopeptidase activity involved in apoptotic process by cytochrome
c" evidence=ISO] [GO:0010659 "cardiac muscle cell apoptotic
process" evidence=IMP] [GO:0010952 "positive regulation of
peptidase activity" evidence=ISO] [GO:0016505 "apoptotic protease
activator activity" evidence=ISO] [GO:0030154 "cell
differentiation" evidence=IEP] [GO:0030900 "forebrain development"
evidence=ISO] [GO:0031072 "heat shock protein binding"
evidence=IPI] [GO:0034349 "glial cell apoptotic process"
evidence=IEP] [GO:0042802 "identical protein binding"
evidence=ISO;IDA] [GO:0043293 "apoptosome" evidence=ISO;IDA]
[GO:0043531 "ADP binding" evidence=IEA] [GO:0051260 "protein
homooligomerization" evidence=IDA] [GO:0051402 "neuron apoptotic
process" evidence=ISO] [GO:0071560 "cellular response to
transforming growth factor beta stimulus" evidence=IDA] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR017986 InterPro:IPR000767
InterPro:IPR001315 InterPro:IPR001680 InterPro:IPR002182
InterPro:IPR015943 Pfam:PF00400 Pfam:PF00619 Pfam:PF00931
PRINTS:PR00364 PROSITE:PS50082 PROSITE:PS50209 PROSITE:PS50294
SMART:SM00320 RGD:620575 GO:GO:0005524 GO:GO:0007420 GO:GO:0030154
GO:GO:0006952 GO:GO:0006917 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 GO:GO:0071560 GO:GO:0007568
eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0051260
GO:GO:0001666 GO:GO:0007584 GO:GO:0043531 GO:GO:0042802
Gene3D:1.10.533.10 InterPro:IPR011029 SUPFAM:SSF47986 GO:GO:0043293
CTD:317 HOVERGEN:HBG018730 KO:K02084 InterPro:IPR017251
PIRSF:PIRSF037646 EMBL:AF320222 IPI:IPI00324110 RefSeq:NP_076469.1
UniGene:Rn.64522 ProteinModelPortal:Q9EPV5 SMR:Q9EPV5
MINT:MINT-3370020 STRING:Q9EPV5 PRIDE:Q9EPV5 GeneID:78963
KEGG:rno:78963 UCSC:RGD:620575 InParanoid:Q9EPV5 NextBio:614396
Genevestigator:Q9EPV5 GermOnline:ENSRNOG00000008022 GO:GO:0010659
GO:GO:0034349 Uniprot:Q9EPV5
Length = 1249
Score = 131 (51.2 bits), Expect = 0.00020, P = 0.00020
Identities = 73/350 (20%), Positives = 136/350 (38%)
Query: 183 ILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKIS 242
+ I G++G GKS LA + D + G G W S KS +L +
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRD--HALLEGCFSGGV-HWVSIG--KQDKSGLLMKLQNLCT 204
Query: 243 KFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLYDNDCK 302
+ + F +++ + + +L + +S+LIL DDVW+ ++ K +DN C+
Sbjct: 205 RLGQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLIL-DDVWDPWVL----KAFDNQCQ 259
Query: 303 YLVTTRNEAVYEITEAEKVELSKDDIMEISKS--ILLYHXXXXXXXXXXXXXXXXXRCGH 360
L+TTR+++V + K + + + K IL C
Sbjct: 260 ILLTTRDKSVTDSVMGPKYVIPVESGLGKEKGLEILSLFVNMKKEDLPVEAHSIIKECKG 319
Query: 361 HPLTVAVMGKALRKELRSEKWEKAITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFS 420
PL V+++G LR +W + L + + + + + + S
Sbjct: 320 SPLVVSLVGALLRDF--PNRWAYYLRQLQN------KQFKRIRKSSSYDYEALDEAMSIS 371
Query: 421 LEAMPRDSRRLFIALAALSWAEPVPEACLEAIWSILVQKSLFSLAVCKLVEGSLLM--KD 478
+E + D + + L+ L VP L +W + ++ L + V SLL ++
Sbjct: 372 VEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQ--EFVNKSLLFCNRN 429
Query: 479 DTDPLYQVHDMVSLYLDSKTNDSIQMLINGLKAEEIAFICPWFLIFGKEN 528
Y +HD+ +L K +Q L + + + P L G+E+
Sbjct: 430 GKSFCYYLHDLQVDFLTEKNRSQLQDLHRKMVTQFQRYHQPHTLSPGQED 479
>TAIR|locus:2175070 [details] [associations]
symbol:AT5G41740 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006952 "defense response" evidence=IEA;ISS] [GO:0007165
"signal transduction" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0043531 "ADP
binding" evidence=IEA] Pfam:PF00560 InterPro:IPR000157
InterPro:IPR001611 InterPro:IPR000767 InterPro:IPR002182
InterPro:IPR003593 Pfam:PF00931 Pfam:PF01582 PRINTS:PR00364
PROSITE:PS50104 SMART:SM00255 SMART:SM00382 GO:GO:0005524
EMBL:CP002688 GO:GO:0007165 GO:GO:0006952 GO:GO:0043531
GO:GO:0005622 GO:GO:0017111 InterPro:IPR011713 Pfam:PF07725
SUPFAM:SSF52200 IPI:IPI00938946 RefSeq:NP_001154757.1
UniGene:At.30211 ProteinModelPortal:F4JYI4 SMR:F4JYI4
EnsemblPlants:AT5G41740.2 GeneID:834177 KEGG:ath:AT5G41740
OMA:GISCSIR Uniprot:F4JYI4
Length = 1114
Score = 135 (52.6 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 67/268 (25%), Positives = 122/268 (45%)
Query: 137 NVEKVIELTAQEVPTRLKVKAEQGYP----ISSKSKFLRKLL--EQEETHQVILIVGLSG 190
N K+I+ A +V +L + + + + + K L LL E +E ++I I G +G
Sbjct: 149 NEAKMIQKIATDVSDKLNLTPSRDFEGMVGMEAHLKRLNSLLCLESDEV-KMIGIWGPAG 207
Query: 191 IGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGF 250
IGK+ +AR + D + F C GS K +A SK +Q
Sbjct: 208 IGKTTIARALFDD--------RLSSSFQHKCFMGNLKGSI----KGVADHDSKLRLQKQL 255
Query: 251 WKKI-KDENSDLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAK---LYDNDCKYLVT 306
KI K+EN + +L + +E L+ + +LI+LDDV + +E AK + + + + T
Sbjct: 256 LSKIFKEENMKIHHLGAI-RERLHDQRVLIILDDVDDLKQLEVLAKEISWFGSGSRIIGT 314
Query: 307 TRNEAVYE---ITEAEKVEL-SKDDIMEISKSILLYHXXXXXXXXXXXXXXXXXRCGHHP 362
T ++ + + I +V+ SK D +EI + + C + P
Sbjct: 315 TEDKKILKAHGIHNIYRVDFPSKKDALEIL-CLSAFKQSSIPDGFEELANKVAKLCSNLP 373
Query: 363 LTVAVMGKALRKELRSEKWEKAITDLST 390
L + V+G +LR E +++WE+ ++ + +
Sbjct: 374 LGLCVVGASLRGE-GNQEWERLLSRIES 400
Score = 45 (20.9 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 704 EKMFAFEIDKNLIKLLENGSEVVQHHAIVTLKAFYELAGSPANASLRPANLNLLPWQVRL 763
E++ + ++ ++LL G E + + I+ L Y L P N S + NL L + L
Sbjct: 589 ERLVELHMPRSNLELLWGGIEPLPNLKIINLNRSYRLKEIP-NLS-KATNLERLTLESCL 646
Query: 764 RL 765
L
Sbjct: 647 SL 648
>UNIPROTKB|F1SQT5 [details] [associations]
symbol:APAF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043531 "ADP binding" evidence=IEA] [GO:0042981
"regulation of apoptotic process" evidence=IEA] [GO:0006952
"defense response" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR017986 InterPro:IPR000767
InterPro:IPR001315 InterPro:IPR001680 InterPro:IPR002182
InterPro:IPR015943 Pfam:PF00400 Pfam:PF00619 Pfam:PF00931
PRINTS:PR00364 PROSITE:PS50082 PROSITE:PS50209 PROSITE:PS50294
SMART:SM00114 SMART:SM00320 GO:GO:0006952 GO:GO:0042981
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0043531
GO:GO:0005622 Gene3D:1.10.533.10 InterPro:IPR011029 SUPFAM:SSF47986
CTD:317 KO:K02084 OMA:KVCKNSA InterPro:IPR017251 PIRSF:PIRSF037646
GeneTree:ENSGT00700000104017 EMBL:FP102239 EMBL:CU633605
RefSeq:XP_003481790.1 Ensembl:ENSSSCT00000000968
Ensembl:ENSSSCT00000033603 GeneID:100513283 KEGG:ssc:100513283
Uniprot:F1SQT5
Length = 1249
Score = 129 (50.5 bits), Expect = 0.00033, P = 0.00033
Identities = 71/330 (21%), Positives = 127/330 (38%)
Query: 183 ILIVGLSGIGKSCLARQVASDPPER---FVGGAVELGFGQWCSRAACNGSKSDYQKRLAR 239
+ I G++G GKS LA + D F GG W S KS +L
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEVCFPGGV------HWVSIG--KQDKSGLLMKLQN 201
Query: 240 KISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLYDN 299
++ F +++ + + +L + +S+LIL DD+W+ ++ K +DN
Sbjct: 202 LCARLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLIL-DDIWDPWVL----KAFDN 256
Query: 300 DCKYLVTTRNEAVYEITEAEKVELSKDDIMEISKS--ILLYHXXXXXXXXXXXXXXXXXR 357
C+ L+TTR+++V + K + + + K IL
Sbjct: 257 QCQILLTTRDKSVTDSVMGPKYVIPVESGLGKEKGLEILSLFVNMKKADLPEQAHSIIKE 316
Query: 358 CGHHPLTVAVMGKALRKELRSEKWEKAITDLSTFATCAPGPVSYVNEKEAENTLTIFGSF 417
C PL V+++G LR +W+ + L + + + + + +
Sbjct: 317 CKGSPLVVSLIGALLRDF--PNRWDYYLRQLQN------KQFKRIKKSSSYDYEALDEAM 368
Query: 418 EFSLEAMPRDSRRLFIALAALSWAEPVPEACLEAIWSILVQKSLFSLAVCKLVEGSLLMK 477
S+E + D + + L+ L VP L +W + ++ L + V SLL
Sbjct: 369 SISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQ--EFVNKSLLFC 426
Query: 478 DDTDP--LYQVHDMVSLYLDSKTNDSIQML 505
D LY +HD+ +L K +Q L
Sbjct: 427 DRNGKSFLYYLHDLQVDFLTEKNRSQLQDL 456
>MGI|MGI:1306796 [details] [associations]
symbol:Apaf1 "apoptotic peptidase activating factor 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001843 "neural tube closure" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005829 "cytosol" evidence=IDA;TAS]
[GO:0006309 "apoptotic DNA fragmentation" evidence=IGI] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006917 "induction of
apoptosis" evidence=ISO] [GO:0006919 "activation of cysteine-type
endopeptidase activity involved in apoptotic process"
evidence=ISO;IGI;IMP] [GO:0006952 "defense response" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IMP]
[GO:0007420 "brain development" evidence=IMP] [GO:0008635
"activation of cysteine-type endopeptidase activity involved in
apoptotic process by cytochrome c" evidence=ISO] [GO:0010659
"cardiac muscle cell apoptotic process" evidence=ISO] [GO:0010952
"positive regulation of peptidase activity" evidence=IPI]
[GO:0016505 "apoptotic protease activator activity" evidence=IPI]
[GO:0030900 "forebrain development" evidence=IMP] [GO:0031072 "heat
shock protein binding" evidence=ISO] [GO:0042802 "identical protein
binding" evidence=ISO;IPI] [GO:0042981 "regulation of apoptotic
process" evidence=IEA] [GO:0043293 "apoptosome" evidence=ISO]
[GO:0043531 "ADP binding" evidence=IEA] [GO:0051260 "protein
homooligomerization" evidence=ISO] [GO:0051402 "neuron apoptotic
process" evidence=IGI] [GO:0071560 "cellular response to
transforming growth factor beta stimulus" evidence=ISO]
InterPro:IPR017986 InterPro:IPR000767 InterPro:IPR001315
InterPro:IPR001680 InterPro:IPR002182 InterPro:IPR015943
Pfam:PF00400 Pfam:PF00619 Pfam:PF00931 PRINTS:PR00364
PROSITE:PS50082 PROSITE:PS50209 PROSITE:PS50294 SMART:SM00320
EMBL:AF064071 MGI:MGI:1306796 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 GO:GO:0005794 GO:GO:0006952 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0030900 GO:GO:0051402
GO:GO:0043531 GO:GO:0006919 GO:GO:0001843 GO:GO:0006309
GO:GO:0008635 Gene3D:1.10.533.10 InterPro:IPR011029 SUPFAM:SSF47986
OrthoDB:EOG43TZTP GO:GO:0043293 GO:GO:0016505 CTD:317
HOVERGEN:HBG018730 KO:K02084 OMA:KVCKNSA InterPro:IPR017251
PIRSF:PIRSF037646 EMBL:BC131683 EMBL:BC131684 IPI:IPI00135366
IPI:IPI00654978 RefSeq:NP_001036023.1 RefSeq:NP_033814.2
UniGene:Mm.220289 PDB:3SFZ PDB:3SHF PDBsum:3SFZ PDBsum:3SHF
ProteinModelPortal:O88879 SMR:O88879 IntAct:O88879 STRING:O88879
PhosphoSite:O88879 PaxDb:O88879 PRIDE:O88879
Ensembl:ENSMUST00000020157 Ensembl:ENSMUST00000159110 GeneID:11783
KEGG:mmu:11783 GeneTree:ENSGT00700000104017 InParanoid:A2RRK8
ChiTaRS:APAF1 NextBio:279591 Bgee:O88879 CleanEx:MM_APAF1
Genevestigator:O88879 GermOnline:ENSMUSG00000019979 Uniprot:O88879
Length = 1249
Score = 127 (49.8 bits), Expect = 0.00054, P = 0.00054
Identities = 70/327 (21%), Positives = 125/327 (38%)
Query: 183 ILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKIS 242
+ I G++G GKS LA + D + G G W S KS +L
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRD--HSLLEGCFSGGV-HWVSIG--KQDKSGLLMKLQNLCM 204
Query: 243 KFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLYDNDCK 302
+ + F +++ + + +L + +S+LIL DDVW+ ++ K +DN C+
Sbjct: 205 RLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLIL-DDVWDPWVL----KAFDNQCQ 259
Query: 303 YLVTTRNEAVYEITEAEK--VELSKDDIMEISKSILLYHXXXXXXXXXXXXXXXXXRCGH 360
L+TTR+++V + K V + E IL C
Sbjct: 260 ILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKG 319
Query: 361 HPLTVAVMGKALRKELRSEKWEKAITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFS 420
PL V+++G LR +W + L + + + + + + S
Sbjct: 320 SPLVVSLIGALLRDF--PNRWAYYLRQLQN------KQFKRIRKSSSYDYEALDEAMSIS 371
Query: 421 LEAMPRDSRRLFIALAALSWAEPVPEACLEAIWSILVQKSLFSLAVCKLVEGSLLM--KD 478
+E + D + + L+ L VP L +W + ++ L + V SLL ++
Sbjct: 372 VEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQ--EFVNKSLLFCNRN 429
Query: 479 DTDPLYQVHDMVSLYLDSKTNDSIQML 505
Y +HD+ +L K +Q L
Sbjct: 430 GKSFCYYLHDLQVDFLTEKNRSQLQDL 456
>UNIPROTKB|C9JLV4 [details] [associations]
symbol:APAF1 "Apoptotic protease-activating factor 1"
species:9606 "Homo sapiens" [GO:0006952 "defense response"
evidence=IEA] [GO:0042981 "regulation of apoptotic process"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] InterPro:IPR017986 InterPro:IPR000767
InterPro:IPR001315 InterPro:IPR001680 InterPro:IPR002182
InterPro:IPR015943 Pfam:PF00400 Pfam:PF00619 Pfam:PF00931
PRINTS:PR00364 PROSITE:PS50082 PROSITE:PS50209 PROSITE:PS50294
SMART:SM00320 GO:GO:0005634 GO:GO:0005794 GO:GO:0006952
GO:GO:0042981 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0043531
InterPro:IPR011047 SUPFAM:SSF50998 Gene3D:1.10.533.10
InterPro:IPR011029 SUPFAM:SSF47986 EMBL:AC011248
HOGENOM:HOG000290173 HGNC:HGNC:576 EMBL:AC013283 IPI:IPI00953387
SMR:C9JLV4 STRING:C9JLV4 Ensembl:ENST00000339433
Ensembl:ENST00000549007 Uniprot:C9JLV4
Length = 1163
Score = 126 (49.4 bits), Expect = 0.00064, P = 0.00064
Identities = 70/327 (21%), Positives = 126/327 (38%)
Query: 183 ILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKIS 242
+ I G++G GKS LA + D + G G W S KS +L +
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRD--HSLLEGCFPGGV-HWVSVG--KQDKSGLLMKLQNLCT 204
Query: 243 KFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLYDNDCK 302
+ F +++ + + +L + +S+LIL DDVW+ ++ K +D+ C+
Sbjct: 205 RLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLIL-DDVWDSWVL----KAFDSQCQ 259
Query: 303 YLVTTRNEAVYEITEAEKVELSKDDIMEISKS--ILLYHXXXXXXXXXXXXXXXXXRCGH 360
L+TTR+++V + K + + + K IL C
Sbjct: 260 ILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKG 319
Query: 361 HPLTVAVMGKALRKELRSEKWEKAITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFS 420
PL V+++G LR +WE + L + + + + + + S
Sbjct: 320 SPLVVSLIGALLRDF--PNRWEYYLKQLQN------KQFKRIRKSSSYDYEALDEAMSIS 371
Query: 421 LEAMPRDSRRLFIALAALSWAEPVPEACLEAIWSILVQKSLFSLAVCKLVEGSLLMKDDT 480
+E + D + + L+ L VP L +W + ++ L + V SLL D
Sbjct: 372 VEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQ--EFVNKSLLFCDRN 429
Query: 481 DPL--YQVHDMVSLYLDSKTNDSIQML 505
Y +HD+ +L K +Q L
Sbjct: 430 GKSFRYYLHDLQVDFLTEKNCSQLQDL 456
>UNIPROTKB|O14727 [details] [associations]
symbol:APAF1 "Apoptotic protease-activating factor 1"
species:9606 "Homo sapiens" [GO:0006952 "defense response"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=IEA] [GO:0051402 "neuron apoptotic process" evidence=IEA]
[GO:0001843 "neural tube closure" evidence=IEA] [GO:0006309
"apoptotic DNA fragmentation" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000166 "nucleotide binding" evidence=TAS]
[GO:0008656 "cysteine-type endopeptidase activator activity
involved in apoptotic process" evidence=NAS] [GO:0008635
"activation of cysteine-type endopeptidase activity involved in
apoptotic process by cytochrome c" evidence=IDA;TAS] [GO:0042981
"regulation of apoptotic process" evidence=TAS] [GO:0043293
"apoptosome" evidence=IDA;TAS] [GO:0006919 "activation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IDA] [GO:0097193 "intrinsic apoptotic signaling pathway"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006915
"apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] Reactome:REACT_578 InterPro:IPR017986
InterPro:IPR000767 InterPro:IPR001315 InterPro:IPR001680
InterPro:IPR002182 InterPro:IPR015943 Pfam:PF00400 Pfam:PF00619
Pfam:PF00931 PRINTS:PR00364 PROSITE:PS50082 PROSITE:PS50209
PROSITE:PS50294 SMART:SM00320 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 Pathway_Interaction_DB:p75ntrpathway GO:GO:0007399
GO:GO:0006952 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 GO:GO:0000166 DrugBank:DB00171 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0030900 GO:GO:0051402
Pathway_Interaction_DB:caspase_pathway EMBL:CH471054 GO:GO:0043531
GO:GO:0001843 GO:GO:0097193 GO:GO:0006309 GO:GO:0008656
GO:GO:0008635 Gene3D:1.10.533.10 InterPro:IPR011029 SUPFAM:SSF47986
OrthoDB:EOG43TZTP GO:GO:0043293 EMBL:AF013263 EMBL:AJ243003
EMBL:AJ243004 EMBL:AJ243005 EMBL:AJ243006 EMBL:AJ243007
EMBL:AJ243008 EMBL:AJ243009 EMBL:AJ243010 EMBL:AJ243011
EMBL:AJ243048 EMBL:AJ243107 EMBL:AF134397 EMBL:AF149794
EMBL:AB007873 EMBL:AB103079 EMBL:BC136531 EMBL:BC136532
EMBL:AJ133643 EMBL:AJ133644 EMBL:AJ133645 EMBL:AF248734
IPI:IPI00023630 IPI:IPI00217460 IPI:IPI00217461 IPI:IPI00217462
IPI:IPI00217463 IPI:IPI00375875 PIR:T03818 RefSeq:NP_001151.1
RefSeq:NP_037361.1 RefSeq:NP_863651.1 RefSeq:NP_863658.1
RefSeq:NP_863659.1 UniGene:Hs.552567 PDB:1C15 PDB:1CWW PDB:1CY5
PDB:1Z6T PDB:2P1H PDB:2YGS PDB:3IZA PDB:3YGS PDBsum:1C15
PDBsum:1CWW PDBsum:1CY5 PDBsum:1Z6T PDBsum:2P1H PDBsum:2YGS
PDBsum:3IZA PDBsum:3YGS ProteinModelPortal:O14727 SMR:O14727
DIP:DIP-27624N IntAct:O14727 MINT:MINT-96751 STRING:O14727
PhosphoSite:O14727 PaxDb:O14727 PRIDE:O14727
Ensembl:ENST00000333991 Ensembl:ENST00000357310
Ensembl:ENST00000359972 Ensembl:ENST00000547045
Ensembl:ENST00000550527 Ensembl:ENST00000551964
Ensembl:ENST00000552268 GeneID:317 KEGG:hsa:317 UCSC:uc001tfy.3
UCSC:uc001tfz.3 UCSC:uc001tga.3 UCSC:uc001tgb.3 UCSC:uc001tgc.3
CTD:317 GeneCards:GC12P099039 HGNC:HGNC:576 HPA:HPA031373
MIM:602233 neXtProt:NX_O14727 PharmGKB:PA24868 HOVERGEN:HBG018730
InParanoid:O14727 KO:K02084 OMA:KVCKNSA PhylomeDB:O14727
Pathway_Interaction_DB:hivnefpathway BindingDB:O14727
ChEMBL:CHEMBL1795093 EvolutionaryTrace:O14727 GenomeRNAi:317
NextBio:1287 PMAP-CutDB:O14727 ArrayExpress:O14727 Bgee:O14727
Genevestigator:O14727 GermOnline:ENSG00000120868 InterPro:IPR017251
PIRSF:PIRSF037646 Uniprot:O14727
Length = 1248
Score = 126 (49.4 bits), Expect = 0.00070, P = 0.00070
Identities = 70/327 (21%), Positives = 126/327 (38%)
Query: 183 ILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKIS 242
+ I G++G GKS LA + D + G G W S KS +L +
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRD--HSLLEGCFPGGV-HWVSVG--KQDKSGLLMKLQNLCT 204
Query: 243 KFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLYDNDCK 302
+ F +++ + + +L + +S+LIL DDVW+ ++ K +D+ C+
Sbjct: 205 RLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLIL-DDVWDSWVL----KAFDSQCQ 259
Query: 303 YLVTTRNEAVYEITEAEKVELSKDDIMEISKS--ILLYHXXXXXXXXXXXXXXXXXRCGH 360
L+TTR+++V + K + + + K IL C
Sbjct: 260 ILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKG 319
Query: 361 HPLTVAVMGKALRKELRSEKWEKAITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFS 420
PL V+++G LR +WE + L + + + + + + S
Sbjct: 320 SPLVVSLIGALLRDF--PNRWEYYLKQLQN------KQFKRIRKSSSYDYEALDEAMSIS 371
Query: 421 LEAMPRDSRRLFIALAALSWAEPVPEACLEAIWSILVQKSLFSLAVCKLVEGSLLMKDDT 480
+E + D + + L+ L VP L +W + ++ L + V SLL D
Sbjct: 372 VEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQ--EFVNKSLLFCDRN 429
Query: 481 DPL--YQVHDMVSLYLDSKTNDSIQML 505
Y +HD+ +L K +Q L
Sbjct: 430 GKSFRYYLHDLQVDFLTEKNCSQLQDL 456
>UNIPROTKB|E1BR73 [details] [associations]
symbol:APAF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005622 "intracellular" evidence=IEA] [GO:0006952
"defense response" evidence=IEA] [GO:0042981 "regulation of
apoptotic process" evidence=IEA] [GO:0043531 "ADP binding"
evidence=IEA] InterPro:IPR017986 InterPro:IPR000767
InterPro:IPR001315 InterPro:IPR001680 InterPro:IPR002182
InterPro:IPR015943 Pfam:PF00400 Pfam:PF00619 Pfam:PF00931
PRINTS:PR00364 PROSITE:PS50082 PROSITE:PS50209 PROSITE:PS50294
SMART:SM00114 SMART:SM00320 GO:GO:0006952 GO:GO:0042981
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0043531
GO:GO:0005622 Gene3D:1.10.533.10 InterPro:IPR011029 SUPFAM:SSF47986
GeneTree:ENSGT00700000104017 EMBL:AADN02005970 IPI:IPI00597741
ProteinModelPortal:E1BR73 Ensembl:ENSGALT00000018802
ArrayExpress:E1BR73 Uniprot:E1BR73
Length = 1251
Score = 126 (49.4 bits), Expect = 0.00070, P = 0.00070
Identities = 52/243 (21%), Positives = 98/243 (40%)
Query: 267 LLQEALYGKSILILLDDVWEQDIVERFAKLYDNDCKYLVTTRNEAVYEITEAEKVELSKD 326
LL Y L++LDD+W+ ++ K +DN C+ L+T+R+ +V + K E+ +
Sbjct: 229 LLMLRKYQSRSLLVLDDIWDSWVL----KAFDNQCQVLITSRDRSVTDAVSGNKYEIHVE 284
Query: 327 DIMEISKS--ILLYHXXXXXXXXXXXXXXXXXRCGHHPLTVAVMGKALRKELRSEKWEKA 384
+ K +L C PL ++++G AL ++ S +WE
Sbjct: 285 SGLTHEKGLEVLALFVNMKISELPEQASCIVTECKGSPLVISLIG-ALLRDFPS-RWEYY 342
Query: 385 ITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDSRRLFIALAALSWAEPV 444
+ L + + + + + + S+E + D + + L+ L V
Sbjct: 343 LKQLQN------KQFKRIRKSSSYDYEALDEAMSISVEQLSNDLKEYYKDLSILPKDVKV 396
Query: 445 PEACLEAIWSILVQKSLFSLAVCKLVEGSLLMKDDTDPL--YQVHDMVSLYLDSKTNDSI 502
P L +W + ++ L + V SLL D Y +HD+ +L K + +
Sbjct: 397 PTKVLCILWDMETEEVEDILQ--EFVNKSLLFCDRNGNSFHYYLHDLQLDFLTEKNCNQL 454
Query: 503 QML 505
Q L
Sbjct: 455 QEL 457
>UNIPROTKB|F1P1P3 [details] [associations]
symbol:APAF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005622 "intracellular" evidence=IEA] [GO:0006952
"defense response" evidence=IEA] [GO:0042981 "regulation of
apoptotic process" evidence=IEA] [GO:0043531 "ADP binding"
evidence=IEA] InterPro:IPR017986 InterPro:IPR000767
InterPro:IPR001315 InterPro:IPR001680 InterPro:IPR002182
InterPro:IPR015943 Pfam:PF00400 Pfam:PF00619 Pfam:PF00931
PRINTS:PR00364 PROSITE:PS50082 PROSITE:PS50209 PROSITE:PS50294
SMART:SM00114 SMART:SM00320 GO:GO:0006952 GO:GO:0042981
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0043531
GO:GO:0005622 Gene3D:1.10.533.10 InterPro:IPR011029 SUPFAM:SSF47986
GeneTree:ENSGT00700000104017 EMBL:AADN02005970 IPI:IPI00822807
Ensembl:ENSGALT00000038231 ArrayExpress:F1P1P3 Uniprot:F1P1P3
Length = 1252
Score = 126 (49.4 bits), Expect = 0.00070, P = 0.00070
Identities = 52/243 (21%), Positives = 98/243 (40%)
Query: 267 LLQEALYGKSILILLDDVWEQDIVERFAKLYDNDCKYLVTTRNEAVYEITEAEKVELSKD 326
LL Y L++LDD+W+ ++ K +DN C+ L+T+R+ +V + K E+ +
Sbjct: 230 LLMLRKYQSRSLLVLDDIWDSWVL----KAFDNQCQVLITSRDRSVTDAVSGNKYEIHVE 285
Query: 327 DIMEISKS--ILLYHXXXXXXXXXXXXXXXXXRCGHHPLTVAVMGKALRKELRSEKWEKA 384
+ K +L C PL ++++G AL ++ S +WE
Sbjct: 286 SGLTHEKGLEVLALFVNMKISELPEQASCIVTECKGSPLVISLIG-ALLRDFPS-RWEYY 343
Query: 385 ITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDSRRLFIALAALSWAEPV 444
+ L + + + + + + S+E + D + + L+ L V
Sbjct: 344 LKQLQN------KQFKRIRKSSSYDYEALDEAMSISVEQLSNDLKEYYKDLSILPKDVKV 397
Query: 445 PEACLEAIWSILVQKSLFSLAVCKLVEGSLLMKDDTDPL--YQVHDMVSLYLDSKTNDSI 502
P L +W + ++ L + V SLL D Y +HD+ +L K + +
Sbjct: 398 PTKVLCILWDMETEEVEDILQ--EFVNKSLLFCDRNGNSFHYYLHDLQLDFLTEKNCNQL 455
Query: 503 QML 505
Q L
Sbjct: 456 QEL 458
>UNIPROTKB|E1BS49 [details] [associations]
symbol:APAF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006952 "defense response" evidence=IEA] [GO:0043531
"ADP binding" evidence=IEA] [GO:0001843 "neural tube closure"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0006309 "apoptotic DNA fragmentation" evidence=IEA] [GO:0008635
"activation of cysteine-type endopeptidase activity involved in
apoptotic process by cytochrome c" evidence=IEA] [GO:0016505
"apoptotic protease activator activity" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0042802 "identical
protein binding" evidence=IEA] [GO:0051402 "neuron apoptotic
process" evidence=IEA] InterPro:IPR017986 InterPro:IPR000767
InterPro:IPR001315 InterPro:IPR001680 InterPro:IPR002182
InterPro:IPR015943 Pfam:PF00400 Pfam:PF00619 Pfam:PF00931
PRINTS:PR00364 PROSITE:PS50082 PROSITE:PS50209 PROSITE:PS50294
SMART:SM00114 SMART:SM00320 GO:GO:0005634 GO:GO:0005794
GO:GO:0006952 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0051402
GO:GO:0043531 GO:GO:0006309 GO:GO:0008635 Gene3D:1.10.533.10
InterPro:IPR011029 SUPFAM:SSF47986 GO:GO:0043293 GO:GO:0016505
OMA:KVCKNSA GeneTree:ENSGT00700000104017 EMBL:AADN02005970
IPI:IPI00822148 ProteinModelPortal:E1BS49
Ensembl:ENSGALT00000038230 ArrayExpress:E1BS49 Uniprot:E1BS49
Length = 1254
Score = 126 (49.4 bits), Expect = 0.00070, P = 0.00070
Identities = 52/243 (21%), Positives = 98/243 (40%)
Query: 267 LLQEALYGKSILILLDDVWEQDIVERFAKLYDNDCKYLVTTRNEAVYEITEAEKVELSKD 326
LL Y L++LDD+W+ ++ K +DN C+ L+T+R+ +V + K E+ +
Sbjct: 229 LLMLRKYQSRSLLVLDDIWDSWVL----KAFDNQCQVLITSRDRSVTDAVSGNKYEIHVE 284
Query: 327 DIMEISKS--ILLYHXXXXXXXXXXXXXXXXXRCGHHPLTVAVMGKALRKELRSEKWEKA 384
+ K +L C PL ++++G AL ++ S +WE
Sbjct: 285 SGLTHEKGLEVLALFVNMKISELPEQASCIVTECKGSPLVISLIG-ALLRDFPS-RWEYY 342
Query: 385 ITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDSRRLFIALAALSWAEPV 444
+ L + + + + + + S+E + D + + L+ L V
Sbjct: 343 LKQLQN------KQFKRIRKSSSYDYEALDEAMSISVEQLSNDLKEYYKDLSILPKDVKV 396
Query: 445 PEACLEAIWSILVQKSLFSLAVCKLVEGSLLMKDDTDPL--YQVHDMVSLYLDSKTNDSI 502
P L +W + ++ L + V SLL D Y +HD+ +L K + +
Sbjct: 397 PTKVLCILWDMETEEVEDILQ--EFVNKSLLFCDRNGNSFHYYLHDLQLDFLTEKNCNQL 454
Query: 503 QML 505
Q L
Sbjct: 455 QEL 457
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 862 829 0.00079 122 3 11 22 0.38 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 16
No. of states in DFA: 630 (67 KB)
Total size of DFA: 405 KB (2196 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 73.60u 0.10s 73.70t Elapsed: 00:00:04
Total cpu time: 73.61u 0.10s 73.71t Elapsed: 00:00:04
Start: Fri May 10 06:15:58 2013 End: Fri May 10 06:16:02 2013