Query 002972
Match_columns 862
No_of_seqs 392 out of 3056
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 14:28:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002972.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002972hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.9E-59 6.2E-64 564.9 40.5 548 13-601 12-608 (889)
2 PLN03210 Resistant to P. syrin 100.0 4.1E-42 9E-47 436.0 26.9 387 57-501 102-505 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 7.1E-38 1.5E-42 340.5 15.5 270 163-458 1-281 (287)
4 PRK04841 transcriptional regul 99.5 6.6E-12 1.4E-16 158.2 27.1 279 173-498 25-332 (903)
5 COG2909 MalT ATP-dependent tra 99.2 1.7E-09 3.8E-14 126.5 25.7 286 170-500 27-340 (894)
6 PRK00411 cdc6 cell division co 98.9 2.3E-07 5E-12 105.8 24.0 281 158-478 30-358 (394)
7 TIGR03015 pepcterm_ATPase puta 98.9 3.9E-07 8.4E-12 98.2 23.6 173 179-372 42-242 (269)
8 TIGR00635 ruvB Holliday juncti 98.8 2.3E-08 5E-13 109.9 13.3 271 159-479 5-290 (305)
9 TIGR02928 orc1/cdc6 family rep 98.8 9.1E-07 2E-11 99.8 25.2 284 158-478 15-350 (365)
10 PRK00080 ruvB Holliday junctio 98.8 4.1E-08 8.9E-13 109.1 13.5 270 158-479 25-311 (328)
11 PF05729 NACHT: NACHT domain 98.7 1.2E-07 2.5E-12 93.8 10.7 136 181-336 1-163 (166)
12 PF01637 Arch_ATPase: Archaeal 98.6 3.9E-07 8.4E-12 95.3 11.7 195 161-367 2-233 (234)
13 COG3903 Predicted ATPase [Gene 98.6 2.2E-07 4.7E-12 101.9 9.6 291 179-502 13-318 (414)
14 PRK13342 recombination factor 98.3 8.1E-06 1.7E-10 93.6 14.4 170 159-369 13-197 (413)
15 COG3899 Predicted ATPase [Gene 98.2 3.5E-05 7.6E-10 95.4 19.6 310 160-501 2-389 (849)
16 PRK06893 DNA replication initi 98.2 8.6E-06 1.9E-10 85.7 12.1 142 180-367 39-202 (229)
17 PF13173 AAA_14: AAA domain 98.2 1.3E-05 2.9E-10 76.2 10.5 99 180-314 2-103 (128)
18 COG2256 MGS1 ATPase related to 98.1 3.6E-05 7.7E-10 84.3 14.2 156 167-363 36-207 (436)
19 PF13401 AAA_22: AAA domain; P 98.1 7E-06 1.5E-10 78.0 6.5 113 180-309 4-125 (131)
20 PTZ00112 origin recognition co 98.0 0.00038 8.2E-09 83.4 20.8 199 158-372 755-986 (1164)
21 PRK12402 replication factor C 98.0 0.00016 3.4E-09 80.6 16.6 188 159-365 16-223 (337)
22 PRK07003 DNA polymerase III su 98.0 0.00026 5.6E-09 84.3 18.6 188 158-367 16-220 (830)
23 cd00009 AAA The AAA+ (ATPases 98.0 8.4E-05 1.8E-09 71.0 11.9 43 162-205 2-44 (151)
24 TIGR03420 DnaA_homol_Hda DnaA 97.9 0.00011 2.4E-09 76.9 13.0 158 165-369 24-202 (226)
25 PLN03025 replication factor C 97.9 0.00018 3.9E-09 79.7 14.9 169 159-362 14-194 (319)
26 PRK09087 hypothetical protein; 97.9 0.00019 4.1E-09 75.3 14.2 134 180-368 44-195 (226)
27 PRK13341 recombination factor 97.9 0.00011 2.4E-09 89.0 13.7 162 159-361 29-210 (725)
28 PRK04195 replication factor C 97.8 0.0002 4.3E-09 83.9 14.8 171 158-367 14-201 (482)
29 PRK12323 DNA polymerase III su 97.8 0.00034 7.4E-09 82.3 16.3 189 158-366 16-223 (700)
30 PRK14949 DNA polymerase III su 97.8 0.00053 1.2E-08 83.2 17.7 185 158-366 16-218 (944)
31 PF05496 RuvB_N: Holliday junc 97.8 0.00044 9.6E-09 71.1 14.6 51 158-208 24-78 (233)
32 PRK14963 DNA polymerase III su 97.8 0.00037 8E-09 81.5 15.5 183 158-365 14-214 (504)
33 PRK14961 DNA polymerase III su 97.8 0.00064 1.4E-08 76.7 16.8 186 158-364 16-216 (363)
34 PRK14960 DNA polymerase III su 97.7 0.00089 1.9E-08 79.0 17.3 183 158-365 15-216 (702)
35 PRK08727 hypothetical protein; 97.7 0.00079 1.7E-08 71.1 15.6 28 180-207 41-68 (233)
36 PRK08084 DNA replication initi 97.7 0.00042 9E-09 73.3 13.1 37 168-205 34-70 (235)
37 PRK05564 DNA polymerase III su 97.7 0.00081 1.8E-08 74.3 15.9 168 159-366 5-188 (313)
38 PRK14957 DNA polymerase III su 97.7 0.00063 1.4E-08 79.8 15.4 187 158-368 16-221 (546)
39 PRK08691 DNA polymerase III su 97.7 0.00033 7.2E-09 83.2 13.2 187 158-365 16-217 (709)
40 PF13191 AAA_16: AAA ATPase do 97.7 9.3E-05 2E-09 74.6 7.1 48 160-207 2-51 (185)
41 PRK14956 DNA polymerase III su 97.7 0.00044 9.4E-09 79.3 13.2 188 158-363 18-217 (484)
42 TIGR01242 26Sp45 26S proteasom 97.6 0.001 2.2E-08 75.1 15.9 51 158-208 122-184 (364)
43 PRK06645 DNA polymerase III su 97.6 0.00083 1.8E-08 78.3 15.1 187 158-363 21-224 (507)
44 KOG2028 ATPase related to the 97.6 0.00059 1.3E-08 73.6 12.4 133 166-334 149-292 (554)
45 PRK00440 rfc replication facto 97.6 0.0018 3.9E-08 71.5 16.9 171 159-365 18-200 (319)
46 PF14516 AAA_35: AAA-like doma 97.6 0.012 2.6E-07 65.5 23.0 202 158-374 11-245 (331)
47 COG1474 CDC6 Cdc6-related prot 97.6 0.014 3.1E-07 65.6 23.4 111 160-287 19-135 (366)
48 PRK07994 DNA polymerase III su 97.6 0.0018 3.9E-08 77.3 17.0 184 158-366 16-218 (647)
49 PRK14962 DNA polymerase III su 97.6 0.0013 2.8E-08 76.4 15.4 190 158-370 14-221 (472)
50 PRK14955 DNA polymerase III su 97.5 0.0014 3E-08 74.9 15.3 192 158-365 16-225 (397)
51 TIGR02397 dnaX_nterm DNA polym 97.5 0.0018 4E-08 72.6 16.2 180 158-367 14-217 (355)
52 PF00308 Bac_DnaA: Bacterial d 97.5 0.0017 3.6E-08 67.9 14.3 157 168-360 21-200 (219)
53 PHA02544 44 clamp loader, smal 97.5 0.0027 6E-08 70.1 16.4 48 158-205 21-68 (316)
54 PRK14964 DNA polymerase III su 97.5 0.0016 3.5E-08 75.4 14.9 186 158-364 13-213 (491)
55 TIGR00678 holB DNA polymerase 97.5 0.0025 5.4E-08 64.8 14.7 81 274-363 95-186 (188)
56 PRK05642 DNA replication initi 97.5 0.0015 3.2E-08 69.0 13.3 26 180-205 45-70 (234)
57 PRK14951 DNA polymerase III su 97.4 0.0024 5.1E-08 76.1 15.8 188 158-365 16-222 (618)
58 PTZ00202 tuzin; Provisional 97.4 0.0018 3.9E-08 72.6 13.6 51 155-205 259-311 (550)
59 PRK14970 DNA polymerase III su 97.4 0.0035 7.5E-08 70.9 16.6 48 158-205 17-64 (367)
60 smart00382 AAA ATPases associa 97.4 0.0017 3.8E-08 61.1 12.2 37 181-218 3-39 (148)
61 PRK14958 DNA polymerase III su 97.4 0.0032 7E-08 73.8 16.7 48 158-205 16-63 (509)
62 PRK09112 DNA polymerase III su 97.4 0.0026 5.6E-08 71.1 15.2 190 158-368 23-240 (351)
63 PRK05896 DNA polymerase III su 97.4 0.0016 3.4E-08 76.8 13.6 189 158-368 16-221 (605)
64 PRK14088 dnaA chromosomal repl 97.4 0.002 4.4E-08 74.4 14.2 35 180-214 130-165 (440)
65 PRK14969 DNA polymerase III su 97.4 0.0036 7.7E-08 73.9 16.1 181 158-363 16-215 (527)
66 TIGR02903 spore_lon_C ATP-depe 97.3 0.063 1.4E-06 64.7 26.7 105 264-371 281-398 (615)
67 PRK07471 DNA polymerase III su 97.3 0.0033 7E-08 70.7 14.6 189 158-368 19-238 (365)
68 PRK09111 DNA polymerase III su 97.3 0.0062 1.3E-07 72.6 17.2 193 158-366 24-231 (598)
69 TIGR02639 ClpA ATP-dependent C 97.3 0.0027 5.9E-08 78.2 14.4 47 158-205 182-228 (731)
70 PRK08903 DnaA regulatory inact 97.3 0.0051 1.1E-07 64.5 14.6 39 166-204 28-66 (227)
71 PRK14959 DNA polymerase III su 97.3 0.0074 1.6E-07 71.6 17.1 189 158-372 16-225 (624)
72 PF00004 AAA: ATPase family as 97.2 0.00094 2E-08 63.1 7.9 24 183-206 1-24 (132)
73 PRK08451 DNA polymerase III su 97.2 0.0065 1.4E-07 71.1 16.1 184 158-367 14-217 (535)
74 PRK06620 hypothetical protein; 97.2 0.0038 8.2E-08 65.0 12.6 24 181-204 45-68 (214)
75 cd01128 rho_factor Transcripti 97.2 0.0004 8.8E-09 73.7 5.4 30 180-209 16-46 (249)
76 PRK06305 DNA polymerase III su 97.2 0.0076 1.7E-07 69.8 16.1 48 158-205 17-64 (451)
77 PRK03992 proteasome-activating 97.2 0.007 1.5E-07 68.9 15.5 50 158-207 131-192 (389)
78 PRK14087 dnaA chromosomal repl 97.2 0.0064 1.4E-07 70.4 15.3 159 180-370 141-321 (450)
79 PRK07764 DNA polymerase III su 97.2 0.0079 1.7E-07 74.2 16.4 181 158-363 15-216 (824)
80 PRK08116 hypothetical protein; 97.2 0.0022 4.9E-08 69.0 10.5 27 181-207 115-141 (268)
81 PRK00149 dnaA chromosomal repl 97.2 0.0053 1.2E-07 71.4 14.3 29 180-208 148-176 (450)
82 PRK14954 DNA polymerase III su 97.1 0.0068 1.5E-07 72.4 15.4 190 158-363 16-223 (620)
83 PRK14952 DNA polymerase III su 97.1 0.012 2.5E-07 70.0 17.2 181 158-363 13-214 (584)
84 KOG0989 Replication factor C, 97.1 0.0032 7E-08 67.0 11.0 170 160-361 38-223 (346)
85 PF05621 TniB: Bacterial TniB 97.1 0.025 5.5E-07 61.0 18.0 188 165-365 44-258 (302)
86 TIGR03345 VI_ClpV1 type VI sec 97.1 0.0028 6.1E-08 78.9 12.3 47 158-205 187-233 (852)
87 PTZ00454 26S protease regulato 97.1 0.012 2.7E-07 66.8 16.5 50 159-208 146-207 (398)
88 PRK07133 DNA polymerase III su 97.1 0.012 2.6E-07 70.9 17.1 187 158-368 18-220 (725)
89 PRK14950 DNA polymerase III su 97.1 0.011 2.4E-07 70.8 16.9 188 158-368 16-221 (585)
90 PF07693 KAP_NTPase: KAP famil 97.1 0.015 3.2E-07 64.5 16.4 74 167-245 5-80 (325)
91 CHL00095 clpC Clp protease ATP 97.1 0.0057 1.2E-07 76.3 14.5 47 158-205 179-225 (821)
92 PRK07940 DNA polymerase III su 97.1 0.011 2.3E-07 67.2 15.3 46 159-204 6-60 (394)
93 PRK09376 rho transcription ter 97.1 0.00054 1.2E-08 76.2 4.7 30 180-209 169-199 (416)
94 TIGR00362 DnaA chromosomal rep 97.1 0.0065 1.4E-07 69.6 13.7 28 180-207 136-163 (405)
95 KOG2004 Mitochondrial ATP-depe 97.0 0.014 3.1E-07 68.4 15.8 53 157-209 410-467 (906)
96 PRK14971 DNA polymerase III su 97.0 0.02 4.2E-07 68.8 17.1 188 158-365 17-219 (614)
97 PRK14953 DNA polymerase III su 97.0 0.026 5.5E-07 66.0 17.6 47 159-205 17-63 (486)
98 PRK05707 DNA polymerase III su 97.0 0.017 3.6E-07 64.1 15.3 88 274-368 105-203 (328)
99 PRK14948 DNA polymerase III su 96.9 0.023 5E-07 68.3 17.2 190 158-366 16-220 (620)
100 PTZ00361 26 proteosome regulat 96.9 0.013 2.9E-07 67.1 14.1 48 161-208 186-245 (438)
101 PRK10865 protein disaggregatio 96.9 0.012 2.5E-07 73.6 14.4 47 158-205 178-224 (857)
102 PRK14086 dnaA chromosomal repl 96.8 0.011 2.4E-07 69.8 13.0 26 181-206 315-340 (617)
103 PRK06647 DNA polymerase III su 96.8 0.028 6.2E-07 66.7 16.4 181 158-365 16-217 (563)
104 TIGR03346 chaperone_ClpB ATP-d 96.8 0.011 2.5E-07 73.9 13.6 47 158-205 173-219 (852)
105 cd01131 PilT Pilus retraction 96.7 0.0038 8.1E-08 64.2 7.4 111 181-313 2-112 (198)
106 PRK14965 DNA polymerase III su 96.7 0.045 9.7E-07 65.5 17.3 185 158-368 16-221 (576)
107 PRK10536 hypothetical protein; 96.7 0.023 5E-07 60.1 13.1 135 162-309 59-212 (262)
108 PRK06921 hypothetical protein; 96.7 0.0032 7E-08 67.7 6.9 28 180-207 117-144 (266)
109 KOG2543 Origin recognition com 96.7 0.0031 6.7E-08 68.9 6.6 50 158-207 6-57 (438)
110 COG1373 Predicted ATPase (AAA+ 96.7 0.023 4.9E-07 64.9 14.0 234 166-477 22-269 (398)
111 TIGR03689 pup_AAA proteasome A 96.7 0.017 3.7E-07 67.3 13.1 48 160-207 184-243 (512)
112 PRK11034 clpA ATP-dependent Cl 96.7 0.018 3.9E-07 70.5 13.9 46 158-204 186-231 (758)
113 TIGR01241 FtsH_fam ATP-depende 96.6 0.03 6.6E-07 65.9 15.0 28 180-207 88-115 (495)
114 COG1222 RPT1 ATP-dependent 26S 96.6 0.07 1.5E-06 58.3 16.2 187 162-389 155-393 (406)
115 CHL00181 cbbX CbbX; Provisiona 96.6 0.036 7.8E-07 60.4 14.4 24 181-204 60-83 (287)
116 PF12799 LRR_4: Leucine Rich r 96.6 0.0011 2.4E-08 50.4 1.7 40 564-604 1-40 (44)
117 PRK12422 chromosomal replicati 96.6 0.027 5.8E-07 65.1 13.7 26 180-205 141-166 (445)
118 TIGR00767 rho transcription te 96.6 0.0034 7.4E-08 70.3 6.1 93 180-287 168-267 (415)
119 CHL00176 ftsH cell division pr 96.6 0.023 5E-07 68.3 13.6 48 159-206 184-242 (638)
120 PF10443 RNA12: RNA12 protein; 96.6 0.44 9.6E-06 53.9 22.6 204 163-378 1-288 (431)
121 TIGR02881 spore_V_K stage V sp 96.6 0.03 6.6E-07 60.1 13.2 25 180-204 42-66 (261)
122 PRK07261 topology modulation p 96.5 0.0073 1.6E-07 60.5 7.6 24 182-205 2-25 (171)
123 PF04665 Pox_A32: Poxvirus A32 96.5 0.013 2.8E-07 61.5 9.5 32 181-213 14-45 (241)
124 cd01393 recA_like RecA is a b 96.5 0.025 5.3E-07 59.2 11.6 49 169-217 7-61 (226)
125 PF01695 IstB_IS21: IstB-like 96.5 0.0019 4.2E-08 65.1 3.1 26 180-205 47-72 (178)
126 PRK05563 DNA polymerase III su 96.4 0.051 1.1E-06 64.7 15.3 47 158-204 16-62 (559)
127 COG0593 DnaA ATPase involved i 96.4 0.046 9.9E-07 61.7 13.9 129 180-342 113-263 (408)
128 PRK08181 transposase; Validate 96.3 0.0055 1.2E-07 65.9 5.9 25 181-205 107-131 (269)
129 cd01120 RecA-like_NTPases RecA 96.3 0.013 2.7E-07 57.3 7.9 35 182-217 1-35 (165)
130 PRK09361 radB DNA repair and r 96.3 0.015 3.1E-07 61.0 8.8 49 169-218 11-60 (225)
131 PF05673 DUF815: Protein of un 96.3 0.018 3.9E-07 60.2 9.2 52 154-206 23-78 (249)
132 PRK08118 topology modulation p 96.3 0.0097 2.1E-07 59.4 6.9 24 182-205 3-26 (167)
133 PF13207 AAA_17: AAA domain; P 96.3 0.0033 7.2E-08 58.7 3.4 23 182-204 1-23 (121)
134 TIGR00602 rad24 checkpoint pro 96.3 0.04 8.6E-07 66.0 13.1 48 158-205 84-135 (637)
135 PRK12377 putative replication 96.2 0.016 3.5E-07 61.5 8.6 28 180-207 101-128 (248)
136 COG2255 RuvB Holliday junction 96.2 0.11 2.3E-06 55.2 14.2 51 158-208 26-80 (332)
137 COG1484 DnaC DNA replication p 96.2 0.0076 1.7E-07 64.4 6.1 27 179-205 104-130 (254)
138 TIGR02880 cbbX_cfxQ probable R 96.2 0.048 1E-06 59.4 12.3 24 182-205 60-83 (284)
139 PRK10865 protein disaggregatio 96.2 0.59 1.3E-05 58.7 23.3 45 160-204 570-622 (857)
140 COG0542 clpA ATP-binding subun 96.1 0.21 4.5E-06 60.6 18.0 95 180-298 521-618 (786)
141 PRK09183 transposase/IS protei 96.1 0.015 3.2E-07 62.4 7.5 25 180-204 102-126 (259)
142 COG0466 Lon ATP-dependent Lon 96.0 0.13 2.9E-06 60.8 15.1 53 157-209 322-379 (782)
143 TIGR02639 ClpA ATP-dependent C 96.0 0.04 8.7E-07 68.0 11.6 26 180-205 484-509 (731)
144 TIGR02858 spore_III_AA stage I 96.0 0.1 2.2E-06 56.3 13.2 135 166-314 98-233 (270)
145 PRK06835 DNA replication prote 96.0 0.017 3.6E-07 64.0 7.4 27 180-206 183-209 (329)
146 cd01394 radB RadB. The archaea 96.0 0.029 6.4E-07 58.3 8.9 48 169-217 7-55 (218)
147 TIGR03346 chaperone_ClpB ATP-d 96.0 0.95 2E-05 57.0 23.7 47 159-205 566-620 (852)
148 PRK07399 DNA polymerase III su 95.9 0.2 4.3E-06 55.4 15.7 46 159-204 5-50 (314)
149 cd01133 F1-ATPase_beta F1 ATP 95.9 0.02 4.2E-07 61.4 7.5 38 180-217 69-106 (274)
150 PRK06526 transposase; Provisio 95.9 0.018 3.8E-07 61.6 7.2 26 180-205 98-123 (254)
151 TIGR02237 recomb_radB DNA repa 95.9 0.016 3.5E-07 59.9 6.7 37 180-217 12-48 (209)
152 PRK06762 hypothetical protein; 95.9 0.11 2.3E-06 51.6 12.3 25 180-204 2-26 (166)
153 COG4618 ArpD ABC-type protease 95.9 1.7 3.6E-05 50.0 22.6 50 266-315 481-537 (580)
154 CHL00095 clpC Clp protease ATP 95.9 0.6 1.3E-05 58.5 21.4 46 159-204 510-563 (821)
155 PRK11331 5-methylcytosine-spec 95.8 0.015 3.2E-07 66.3 6.5 43 161-206 178-220 (459)
156 PRK06067 flagellar accessory p 95.8 0.052 1.1E-06 57.2 10.3 47 169-217 13-61 (234)
157 TIGR01243 CDC48 AAA family ATP 95.8 0.14 2.9E-06 63.5 15.2 29 180-208 487-515 (733)
158 PRK08233 hypothetical protein; 95.8 0.045 9.8E-07 54.9 9.2 26 180-205 3-28 (182)
159 cd01123 Rad51_DMC1_radA Rad51_ 95.8 0.04 8.7E-07 58.0 9.1 49 169-217 7-61 (235)
160 KOG0733 Nuclear AAA ATPase (VC 95.7 0.036 7.9E-07 64.0 8.8 92 159-286 191-293 (802)
161 cd03214 ABC_Iron-Siderophores_ 95.7 0.15 3.2E-06 51.4 12.6 126 180-313 25-161 (180)
162 cd03216 ABC_Carb_Monos_I This 95.7 0.085 1.9E-06 52.3 10.6 112 180-312 26-144 (163)
163 COG3267 ExeA Type II secretory 95.6 0.67 1.5E-05 48.7 16.7 187 163-370 33-247 (269)
164 COG2274 SunT ABC-type bacterio 95.6 3.7 8.1E-05 50.3 25.8 49 266-314 618-673 (709)
165 TIGR01420 pilT_fam pilus retra 95.5 0.046 1E-06 61.2 9.0 119 169-311 113-231 (343)
166 KOG2228 Origin recognition com 95.5 0.15 3.2E-06 55.3 12.0 140 159-311 25-183 (408)
167 TIGR01359 UMP_CMP_kin_fam UMP- 95.5 0.055 1.2E-06 54.5 8.6 23 182-204 1-23 (183)
168 TIGR03877 thermo_KaiC_1 KaiC d 95.5 0.088 1.9E-06 55.7 10.5 48 169-217 9-57 (237)
169 PRK05800 cobU adenosylcobinami 95.5 0.026 5.7E-07 56.4 6.1 23 182-204 3-25 (170)
170 PRK05541 adenylylsulfate kinas 95.5 0.043 9.3E-07 55.1 7.7 31 179-209 6-36 (176)
171 PRK05973 replicative DNA helic 95.4 0.13 2.8E-06 54.2 11.2 141 179-339 63-227 (237)
172 PRK08939 primosomal protein Dn 95.4 0.031 6.8E-07 61.3 6.8 26 180-205 156-181 (306)
173 PRK08058 DNA polymerase III su 95.3 0.45 9.7E-06 53.0 15.9 42 163-204 11-52 (329)
174 PRK07952 DNA replication prote 95.3 0.045 9.7E-07 58.0 7.5 27 180-206 99-125 (244)
175 PF02562 PhoH: PhoH-like prote 95.3 0.024 5.2E-07 58.2 5.2 126 167-309 10-155 (205)
176 TIGR00960 3a0501s02 Type II (G 95.3 0.33 7.1E-06 50.4 13.7 26 180-205 29-54 (216)
177 cd01125 repA Hexameric Replica 95.3 0.16 3.4E-06 53.8 11.5 23 182-204 3-25 (239)
178 PRK11034 clpA ATP-dependent Cl 95.3 0.062 1.3E-06 66.0 9.4 26 180-205 488-513 (758)
179 PRK12608 transcription termina 95.2 0.066 1.4E-06 59.7 8.7 28 181-208 134-161 (380)
180 PF13177 DNA_pol3_delta2: DNA 95.2 0.17 3.7E-06 50.2 10.9 41 164-204 3-43 (162)
181 cd03269 ABC_putative_ATPase Th 95.2 0.36 7.9E-06 49.8 13.9 26 180-205 26-51 (210)
182 KOG0741 AAA+-type ATPase [Post 95.2 0.15 3.3E-06 58.1 11.4 141 179-358 537-704 (744)
183 PLN00020 ribulose bisphosphate 95.2 0.049 1.1E-06 60.3 7.4 30 179-208 147-176 (413)
184 PRK08769 DNA polymerase III su 95.2 0.32 7E-06 53.7 13.8 39 166-204 12-50 (319)
185 TIGR01360 aden_kin_iso1 adenyl 95.2 0.24 5.2E-06 49.9 12.1 26 179-204 2-27 (188)
186 PRK04296 thymidine kinase; Pro 95.1 0.041 8.9E-07 56.1 6.4 113 181-312 3-118 (190)
187 COG1124 DppF ABC-type dipeptid 95.1 0.22 4.7E-06 51.9 11.5 53 266-318 150-210 (252)
188 COG1618 Predicted nucleotide k 95.1 0.013 2.8E-07 56.9 2.4 30 180-209 5-35 (179)
189 PRK14974 cell division protein 95.1 0.24 5.3E-06 55.0 12.8 27 179-205 139-165 (336)
190 PF00448 SRP54: SRP54-type pro 95.1 0.041 8.9E-07 56.4 6.3 26 180-205 1-26 (196)
191 cd03238 ABC_UvrA The excision 95.1 0.26 5.6E-06 49.6 11.9 23 180-202 21-43 (176)
192 COG1223 Predicted ATPase (AAA+ 95.1 0.48 1E-05 49.7 13.7 51 158-208 121-179 (368)
193 PRK06696 uridine kinase; Valid 95.1 0.027 5.8E-07 59.0 4.9 28 178-205 20-47 (223)
194 KOG0733 Nuclear AAA ATPase (VC 95.1 0.24 5.1E-06 57.6 12.5 145 180-362 545-718 (802)
195 PRK04132 replication factor C 95.1 0.37 8.1E-06 59.6 15.2 144 188-366 574-729 (846)
196 PF13238 AAA_18: AAA domain; P 95.0 0.018 3.8E-07 54.1 3.1 22 183-204 1-22 (129)
197 cd03217 ABC_FeS_Assembly ABC-t 95.0 0.21 4.6E-06 51.3 11.4 25 180-204 26-50 (200)
198 CHL00195 ycf46 Ycf46; Provisio 95.0 0.21 4.5E-06 58.4 12.5 27 180-206 259-285 (489)
199 KOG0744 AAA+-type ATPase [Post 95.0 0.05 1.1E-06 58.4 6.6 26 180-205 177-202 (423)
200 COG1102 Cmk Cytidylate kinase 95.0 0.032 6.9E-07 54.3 4.7 24 182-205 2-25 (179)
201 COG0470 HolB ATPase involved i 95.0 0.14 3E-06 56.5 10.7 45 161-205 4-49 (325)
202 cd01122 GP4d_helicase GP4d_hel 95.0 0.16 3.4E-06 54.7 10.8 38 180-217 30-67 (271)
203 cd00267 ABC_ATPase ABC (ATP-bi 95.0 0.22 4.8E-06 48.9 10.9 112 181-314 26-144 (157)
204 PRK06871 DNA polymerase III su 95.0 0.25 5.5E-06 54.6 12.4 163 167-365 11-200 (325)
205 cd00544 CobU Adenosylcobinamid 95.0 0.091 2E-06 52.5 8.2 22 182-203 1-22 (169)
206 PRK13540 cytochrome c biogenes 95.0 0.56 1.2E-05 48.1 14.3 26 180-205 27-52 (200)
207 cd03283 ABC_MutS-like MutS-lik 95.0 0.19 4.1E-06 51.6 10.7 22 181-202 26-47 (199)
208 PRK10867 signal recognition pa 95.0 0.11 2.4E-06 59.7 9.8 28 179-206 99-126 (433)
209 COG2884 FtsE Predicted ATPase 95.0 0.2 4.4E-06 50.2 10.2 141 180-320 28-207 (223)
210 COG4608 AppF ABC-type oligopep 95.0 0.24 5.2E-06 52.6 11.4 128 180-318 39-178 (268)
211 PRK13543 cytochrome c biogenes 95.0 0.35 7.6E-06 50.2 12.9 26 180-205 37-62 (214)
212 cd01124 KaiC KaiC is a circadi 94.9 0.09 1.9E-06 53.0 8.1 35 182-217 1-35 (187)
213 cd03247 ABCC_cytochrome_bd The 94.9 0.37 8E-06 48.4 12.5 26 180-205 28-53 (178)
214 TIGR03608 L_ocin_972_ABC putat 94.9 0.58 1.2E-05 48.1 14.3 26 180-205 24-49 (206)
215 TIGR03345 VI_ClpV1 type VI sec 94.9 0.08 1.7E-06 66.1 9.2 46 159-204 567-620 (852)
216 PRK04328 hypothetical protein; 94.9 0.22 4.7E-06 53.2 11.3 48 169-217 11-59 (249)
217 smart00763 AAA_PrkA PrkA AAA d 94.9 0.031 6.7E-07 62.0 4.8 47 159-205 52-103 (361)
218 PRK07993 DNA polymerase III su 94.9 0.57 1.2E-05 52.2 14.9 165 166-366 10-202 (334)
219 KOG0736 Peroxisome assembly fa 94.9 0.78 1.7E-05 54.9 16.2 59 150-208 664-733 (953)
220 cd03115 SRP The signal recogni 94.8 0.068 1.5E-06 53.4 6.9 24 182-205 2-25 (173)
221 cd03230 ABC_DR_subfamily_A Thi 94.8 0.47 1E-05 47.4 13.0 26 180-205 26-51 (173)
222 PRK00771 signal recognition pa 94.8 0.28 6E-06 56.5 12.6 28 179-206 94-121 (437)
223 PF00485 PRK: Phosphoribulokin 94.8 0.023 4.9E-07 58.2 3.4 25 182-206 1-25 (194)
224 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.8 0.29 6.3E-06 47.5 10.9 101 180-313 26-130 (144)
225 cd03232 ABC_PDR_domain2 The pl 94.8 0.58 1.3E-05 47.7 13.7 24 180-203 33-56 (192)
226 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.8 0.49 1.1E-05 49.5 13.5 26 180-205 48-73 (224)
227 cd03246 ABCC_Protease_Secretio 94.7 0.29 6.3E-06 48.9 11.2 26 180-205 28-53 (173)
228 cd03266 ABC_NatA_sodium_export 94.7 0.57 1.2E-05 48.6 13.7 25 180-204 31-55 (218)
229 cd03223 ABCD_peroxisomal_ALDP 94.7 0.47 1E-05 47.1 12.5 119 180-314 27-152 (166)
230 KOG0735 AAA+-type ATPase [Post 94.7 0.082 1.8E-06 62.2 7.7 27 180-206 431-457 (952)
231 TIGR01189 ccmA heme ABC export 94.7 0.5 1.1E-05 48.3 13.0 26 180-205 26-51 (198)
232 PRK07667 uridine kinase; Provi 94.6 0.052 1.1E-06 55.5 5.5 29 177-205 14-42 (193)
233 KOG0730 AAA+-type ATPase [Post 94.6 0.29 6.2E-06 57.5 11.8 50 159-208 435-496 (693)
234 PF06745 KaiC: KaiC; InterPro 94.6 0.036 7.7E-07 58.1 4.3 126 170-308 8-159 (226)
235 PRK13538 cytochrome c biogenes 94.6 0.4 8.8E-06 49.3 12.1 26 180-205 27-52 (204)
236 PRK13539 cytochrome c biogenes 94.6 0.76 1.6E-05 47.4 14.1 26 180-205 28-53 (207)
237 PRK03839 putative kinase; Prov 94.6 0.026 5.7E-07 56.8 3.1 24 182-205 2-25 (180)
238 PF13671 AAA_33: AAA domain; P 94.5 0.03 6.5E-07 53.8 3.4 24 182-205 1-24 (143)
239 PRK05480 uridine/cytidine kina 94.5 0.032 7E-07 57.7 3.8 26 179-204 5-30 (209)
240 cd03265 ABC_DrrA DrrA is the A 94.5 0.7 1.5E-05 48.1 13.8 25 180-204 26-50 (220)
241 PRK13541 cytochrome c biogenes 94.5 0.83 1.8E-05 46.6 14.1 26 180-205 26-51 (195)
242 COG0563 Adk Adenylate kinase a 94.5 0.1 2.2E-06 52.6 7.2 24 182-205 2-25 (178)
243 PF08423 Rad51: Rad51; InterP 94.5 0.16 3.5E-06 54.3 9.1 49 169-217 26-80 (256)
244 cd03228 ABCC_MRP_Like The MRP 94.5 0.52 1.1E-05 47.0 12.3 26 180-205 28-53 (171)
245 TIGR02324 CP_lyasePhnL phospho 94.5 0.93 2E-05 47.2 14.7 26 180-205 34-59 (224)
246 KOG0729 26S proteasome regulat 94.4 0.26 5.7E-06 51.5 10.0 27 180-206 211-237 (435)
247 TIGR02012 tigrfam_recA protein 94.4 0.12 2.6E-06 56.9 8.1 99 169-285 42-143 (321)
248 TIGR00959 ffh signal recogniti 94.4 0.13 2.9E-06 58.9 8.8 27 179-205 98-124 (428)
249 cd03293 ABC_NrtD_SsuB_transpor 94.4 0.77 1.7E-05 47.8 13.9 26 180-205 30-55 (220)
250 TIGR01188 drrA daunorubicin re 94.4 0.8 1.7E-05 50.3 14.6 49 266-314 133-188 (302)
251 PRK13546 teichoic acids export 94.4 0.49 1.1E-05 50.9 12.6 26 180-205 50-75 (264)
252 PRK04301 radA DNA repair and r 94.4 0.19 4.1E-06 55.7 9.7 49 169-217 90-144 (317)
253 COG1121 ZnuC ABC-type Mn/Zn tr 94.4 0.16 3.6E-06 53.6 8.6 134 180-314 30-203 (254)
254 cd03292 ABC_FtsE_transporter F 94.4 0.8 1.7E-05 47.3 13.9 26 180-205 27-52 (214)
255 cd02019 NK Nucleoside/nucleoti 94.3 0.033 7.3E-07 46.7 2.8 23 182-204 1-23 (69)
256 cd03235 ABC_Metallic_Cations A 94.3 0.66 1.4E-05 48.0 13.2 26 180-205 25-50 (213)
257 TIGR01243 CDC48 AAA family ATP 94.3 0.14 3E-06 63.4 9.3 47 160-206 180-238 (733)
258 PF00560 LRR_1: Leucine Rich R 94.3 0.022 4.7E-07 36.4 1.2 22 565-587 1-22 (22)
259 KOG1969 DNA replication checkp 94.3 0.094 2E-06 62.0 7.2 25 180-204 326-350 (877)
260 cd03259 ABC_Carb_Solutes_like 94.3 0.77 1.7E-05 47.5 13.5 25 180-204 26-50 (213)
261 TIGR00235 udk uridine kinase. 94.3 0.038 8.3E-07 57.1 3.7 27 179-205 5-31 (207)
262 cd03301 ABC_MalK_N The N-termi 94.3 0.88 1.9E-05 47.0 13.9 26 180-205 26-51 (213)
263 cd03225 ABC_cobalt_CbiO_domain 94.3 0.79 1.7E-05 47.3 13.5 26 180-205 27-52 (211)
264 TIGR01277 thiQ thiamine ABC tr 94.3 0.88 1.9E-05 47.1 13.9 26 180-205 24-49 (213)
265 PRK10584 putative ABC transpor 94.3 1.1 2.3E-05 46.9 14.6 26 180-205 36-61 (228)
266 TIGR01166 cbiO cobalt transpor 94.3 0.62 1.3E-05 47.3 12.5 26 180-205 18-43 (190)
267 cd03222 ABC_RNaseL_inhibitor T 94.2 0.55 1.2E-05 47.3 11.8 26 180-205 25-50 (177)
268 PRK09270 nucleoside triphospha 94.2 0.063 1.4E-06 56.5 5.2 36 171-206 24-59 (229)
269 PRK10619 histidine/lysine/argi 94.2 1.2 2.5E-05 47.7 15.0 26 180-205 31-56 (257)
270 PRK09354 recA recombinase A; P 94.2 0.15 3.3E-06 56.6 8.3 100 168-285 46-148 (349)
271 KOG1514 Origin recognition com 94.2 1.3 2.8E-05 52.7 15.9 124 162-307 400-546 (767)
272 cd03258 ABC_MetN_methionine_tr 94.2 0.83 1.8E-05 47.9 13.6 26 180-205 31-56 (233)
273 KOG0617 Ras suppressor protein 94.1 0.014 3.1E-07 57.0 0.1 105 609-740 136-241 (264)
274 cd03297 ABC_ModC_molybdenum_tr 94.1 1 2.2E-05 46.6 14.1 25 181-205 24-48 (214)
275 PRK11264 putative amino-acid A 94.1 1.1 2.5E-05 47.4 14.8 25 180-204 29-53 (250)
276 TIGR03499 FlhF flagellar biosy 94.1 0.13 2.8E-06 56.0 7.5 26 180-205 194-219 (282)
277 PRK00131 aroK shikimate kinase 94.1 0.041 8.8E-07 54.7 3.4 26 180-205 4-29 (175)
278 PTZ00301 uridine kinase; Provi 94.1 0.041 8.8E-07 57.0 3.4 26 180-205 3-28 (210)
279 cd00983 recA RecA is a bacter 94.1 0.16 3.4E-06 56.0 8.1 99 169-285 42-143 (325)
280 PRK10908 cell division protein 94.1 1 2.2E-05 46.9 14.1 26 180-205 28-53 (222)
281 KOG2227 Pre-initiation complex 94.1 0.64 1.4E-05 52.7 12.8 198 158-372 150-376 (529)
282 cd01129 PulE-GspE PulE/GspE Th 94.1 0.35 7.6E-06 52.0 10.7 118 165-310 67-184 (264)
283 PRK11248 tauB taurine transpor 94.1 0.98 2.1E-05 48.3 14.2 26 180-205 27-52 (255)
284 TIGR02236 recomb_radA DNA repa 94.1 0.25 5.5E-06 54.4 9.9 49 169-217 83-137 (310)
285 PRK00625 shikimate kinase; Pro 94.1 0.038 8.2E-07 55.5 3.0 24 182-205 2-25 (173)
286 cd03237 ABC_RNaseL_inhibitor_d 94.1 0.51 1.1E-05 50.2 11.8 26 180-205 25-50 (246)
287 cd03264 ABC_drug_resistance_li 94.1 1.1 2.4E-05 46.2 14.1 23 182-204 27-49 (211)
288 PRK09544 znuC high-affinity zi 94.1 0.79 1.7E-05 48.9 13.3 26 180-205 30-55 (251)
289 TIGR02655 circ_KaiC circadian 94.1 0.25 5.3E-06 58.1 10.2 48 170-217 10-58 (484)
290 PRK10463 hydrogenase nickel in 94.0 0.31 6.6E-06 52.8 10.0 32 178-209 102-133 (290)
291 TIGR00763 lon ATP-dependent pr 94.0 0.54 1.2E-05 58.5 13.7 50 159-208 321-375 (775)
292 TIGR01351 adk adenylate kinase 94.0 0.6 1.3E-05 48.3 12.0 22 183-204 2-23 (210)
293 COG0396 sufC Cysteine desulfur 94.0 0.99 2.2E-05 46.8 13.0 56 266-321 153-215 (251)
294 cd03226 ABC_cobalt_CbiO_domain 94.0 1.1 2.3E-05 46.1 13.8 26 180-205 26-51 (205)
295 PRK06547 hypothetical protein; 94.0 0.053 1.1E-06 54.4 3.8 28 178-205 13-40 (172)
296 TIGR03740 galliderm_ABC gallid 94.0 0.88 1.9E-05 47.4 13.3 25 180-204 26-50 (223)
297 TIGR03878 thermo_KaiC_2 KaiC d 94.0 0.17 3.6E-06 54.4 7.9 37 180-217 36-72 (259)
298 PRK04040 adenylate kinase; Pro 93.9 0.042 9.2E-07 55.9 3.1 26 180-205 2-27 (188)
299 cd03231 ABC_CcmA_heme_exporter 93.9 1.5 3.3E-05 44.9 14.7 25 180-204 26-50 (201)
300 PRK11247 ssuB aliphatic sulfon 93.9 1.1 2.3E-05 48.1 14.0 26 180-205 38-63 (257)
301 TIGR03881 KaiC_arch_4 KaiC dom 93.9 0.36 7.7E-06 50.6 10.2 48 169-217 8-56 (229)
302 COG1131 CcmA ABC-type multidru 93.9 0.69 1.5E-05 50.6 12.6 50 267-316 146-203 (293)
303 cd03224 ABC_TM1139_LivF_branch 93.9 1.1 2.3E-05 46.7 13.6 25 180-204 26-50 (222)
304 cd03268 ABC_BcrA_bacitracin_re 93.9 0.93 2E-05 46.7 13.1 25 180-204 26-50 (208)
305 PRK13537 nodulation ABC transp 93.9 1.3 2.8E-05 48.8 14.9 48 267-314 148-202 (306)
306 cd03294 ABC_Pro_Gly_Bertaine T 93.8 1.3 2.8E-05 47.8 14.5 26 180-205 50-75 (269)
307 PRK13947 shikimate kinase; Pro 93.8 0.046 9.9E-07 54.4 3.0 26 182-207 3-28 (171)
308 TIGR02868 CydC thiol reductant 93.8 0.56 1.2E-05 55.8 12.7 27 179-205 360-386 (529)
309 PHA02244 ATPase-like protein 93.8 0.13 2.8E-06 57.4 6.7 26 182-207 121-146 (383)
310 TIGR02211 LolD_lipo_ex lipopro 93.8 1.4 3E-05 45.8 14.3 26 180-205 31-56 (221)
311 PRK11124 artP arginine transpo 93.8 1.2 2.6E-05 47.0 14.1 26 180-205 28-53 (242)
312 COG1136 SalX ABC-type antimicr 93.8 0.48 1E-05 49.4 10.4 58 260-317 145-210 (226)
313 TIGR03771 anch_rpt_ABC anchore 93.7 1.1 2.4E-05 46.8 13.5 25 181-205 7-31 (223)
314 PRK10733 hflB ATP-dependent me 93.7 0.44 9.4E-06 58.0 11.8 29 180-208 185-213 (644)
315 PRK10575 iron-hydroxamate tran 93.7 1.4 2.9E-05 47.4 14.5 25 180-204 37-61 (265)
316 KOG0991 Replication factor C, 93.7 0.13 2.9E-06 52.8 6.1 56 158-214 27-83 (333)
317 PRK14247 phosphate ABC transpo 93.7 1.6 3.4E-05 46.4 14.9 25 180-204 29-53 (250)
318 cd00984 DnaB_C DnaB helicase C 93.7 0.23 5E-06 52.4 8.4 38 180-217 13-50 (242)
319 PRK11300 livG leucine/isoleuci 93.7 1.2 2.6E-05 47.5 13.9 25 180-204 31-55 (255)
320 PRK14267 phosphate ABC transpo 93.7 1.4 3.1E-05 46.9 14.4 26 180-205 30-55 (253)
321 COG0572 Udk Uridine kinase [Nu 93.6 0.061 1.3E-06 55.4 3.6 29 179-207 7-35 (218)
322 TIGR01288 nodI ATP-binding ABC 93.6 1.4 2.9E-05 48.5 14.6 26 180-205 30-55 (303)
323 CHL00131 ycf16 sulfate ABC tra 93.6 1.7 3.8E-05 46.1 14.9 24 180-203 33-56 (252)
324 COG2812 DnaX DNA polymerase II 93.6 0.27 5.8E-06 57.3 9.1 47 158-204 16-62 (515)
325 cd00227 CPT Chloramphenicol (C 93.6 0.059 1.3E-06 54.1 3.4 25 181-205 3-27 (175)
326 cd03300 ABC_PotA_N PotA is an 93.5 1.4 3E-05 46.3 13.9 26 180-205 26-51 (232)
327 TIGR01069 mutS2 MutS2 family p 93.5 0.31 6.6E-06 60.3 10.1 107 274-390 401-522 (771)
328 PRK06090 DNA polymerase III su 93.5 2.5 5.4E-05 46.7 16.2 182 165-389 10-218 (319)
329 PRK01184 hypothetical protein; 93.5 0.41 9E-06 48.2 9.5 22 181-203 2-23 (184)
330 PRK10418 nikD nickel transport 93.5 1.9 4.1E-05 46.0 15.0 26 180-205 29-54 (254)
331 TIGR03005 ectoine_ehuA ectoine 93.5 1.5 3.2E-05 46.8 14.2 26 180-205 26-51 (252)
332 cd02023 UMPK Uridine monophosp 93.5 0.05 1.1E-06 55.7 2.8 23 182-204 1-23 (198)
333 PRK06217 hypothetical protein; 93.5 0.058 1.2E-06 54.6 3.2 24 182-205 3-26 (183)
334 PLN03187 meiotic recombination 93.5 0.24 5.1E-06 55.2 8.2 49 169-217 114-168 (344)
335 PRK05703 flhF flagellar biosyn 93.5 0.29 6.2E-06 56.4 9.2 25 180-204 221-245 (424)
336 TIGR02322 phosphon_PhnN phosph 93.4 0.062 1.3E-06 54.0 3.3 25 181-205 2-26 (179)
337 cd03215 ABC_Carb_Monos_II This 93.4 0.76 1.7E-05 46.3 11.3 26 180-205 26-51 (182)
338 PRK14269 phosphate ABC transpo 93.4 0.89 1.9E-05 48.2 12.3 25 180-204 28-52 (246)
339 PRK14738 gmk guanylate kinase; 93.4 0.065 1.4E-06 55.4 3.5 30 174-203 7-36 (206)
340 PRK14250 phosphate ABC transpo 93.4 1.8 3.8E-05 45.8 14.5 26 180-205 29-54 (241)
341 PRK13648 cbiO cobalt transport 93.4 1.1 2.4E-05 48.3 13.1 26 180-205 35-60 (269)
342 PRK13948 shikimate kinase; Pro 93.4 0.11 2.3E-06 52.7 4.9 30 178-207 8-37 (182)
343 cd02020 CMPK Cytidine monophos 93.4 0.053 1.2E-06 52.2 2.6 24 182-205 1-24 (147)
344 KOG0444 Cytoskeletal regulator 93.4 0.02 4.3E-07 66.0 -0.5 99 555-660 140-253 (1255)
345 PRK09984 phosphonate/organopho 93.3 1.5 3.4E-05 46.9 14.1 26 180-205 30-55 (262)
346 KOG0734 AAA+-type ATPase conta 93.3 0.21 4.6E-06 57.1 7.4 49 160-208 306-365 (752)
347 PRK09302 circadian clock prote 93.3 0.33 7.2E-06 57.4 9.7 49 169-217 19-68 (509)
348 PF07728 AAA_5: AAA domain (dy 93.3 0.064 1.4E-06 51.4 3.1 23 183-205 2-24 (139)
349 KOG0727 26S proteasome regulat 93.3 0.84 1.8E-05 47.5 11.1 30 179-208 188-217 (408)
350 PF13481 AAA_25: AAA domain; P 93.3 0.15 3.1E-06 51.8 5.8 25 181-205 33-57 (193)
351 PRK15439 autoinducer 2 ABC tra 93.2 1.4 3E-05 52.3 14.7 25 180-204 37-61 (510)
352 TIGR02238 recomb_DMC1 meiotic 93.2 0.47 1E-05 52.3 10.0 50 168-217 83-138 (313)
353 cd01428 ADK Adenylate kinase ( 93.2 0.82 1.8E-05 46.3 11.3 22 183-204 2-23 (194)
354 cd00071 GMPK Guanosine monopho 93.2 0.071 1.5E-06 51.3 3.2 27 182-208 1-27 (137)
355 COG3854 SpoIIIAA ncharacterize 93.2 0.64 1.4E-05 48.0 9.9 117 180-314 137-257 (308)
356 PRK13647 cbiO cobalt transport 93.2 0.87 1.9E-05 49.3 11.9 26 180-205 31-56 (274)
357 PRK13949 shikimate kinase; Pro 93.1 0.074 1.6E-06 53.2 3.2 24 182-205 3-26 (169)
358 TIGR03873 F420-0_ABC_ATP propo 93.1 1.8 3.9E-05 46.2 14.1 26 180-205 27-52 (256)
359 cd03298 ABC_ThiQ_thiamine_tran 93.1 2.2 4.8E-05 44.0 14.4 26 180-205 24-49 (211)
360 TIGR02655 circ_KaiC circadian 93.1 0.33 7.2E-06 57.0 9.1 102 167-286 249-364 (484)
361 cd01121 Sms Sms (bacterial rad 93.1 0.26 5.7E-06 55.6 7.9 50 167-217 68-118 (372)
362 KOG0735 AAA+-type ATPase [Post 93.1 1.4 3E-05 52.4 13.6 46 162-207 671-728 (952)
363 cd02021 GntK Gluconate kinase 93.1 0.064 1.4E-06 52.2 2.7 23 182-204 1-23 (150)
364 PRK11144 modC molybdate transp 93.1 1.7 3.7E-05 48.8 14.5 26 180-205 24-49 (352)
365 COG1428 Deoxynucleoside kinase 93.0 0.14 3E-06 52.3 5.0 26 180-205 4-29 (216)
366 cd03254 ABCC_Glucan_exporter_l 93.0 1.6 3.5E-05 45.5 13.5 26 180-205 29-54 (229)
367 PRK14722 flhF flagellar biosyn 93.0 0.14 3E-06 57.6 5.5 26 180-205 137-162 (374)
368 PRK13651 cobalt transporter AT 93.0 1.6 3.5E-05 47.9 13.9 26 180-205 33-58 (305)
369 COG0703 AroK Shikimate kinase 93.0 0.11 2.3E-06 51.7 4.0 29 181-209 3-31 (172)
370 PF00406 ADK: Adenylate kinase 93.0 0.28 6.1E-06 47.8 7.1 20 185-204 1-20 (151)
371 PRK11153 metN DL-methionine tr 93.0 1.7 3.7E-05 48.7 14.3 26 180-205 31-56 (343)
372 TIGR03263 guanyl_kin guanylate 93.0 0.081 1.8E-06 53.1 3.4 24 181-204 2-25 (180)
373 PRK06964 DNA polymerase III su 93.0 1.1 2.4E-05 49.9 12.6 84 274-368 131-225 (342)
374 TIGR03575 selen_PSTK_euk L-ser 93.0 0.53 1.2E-05 52.3 10.0 23 183-205 2-24 (340)
375 cd02024 NRK1 Nicotinamide ribo 93.0 0.067 1.5E-06 54.3 2.7 23 182-204 1-23 (187)
376 smart00534 MUTSac ATPase domai 93.0 0.39 8.5E-06 48.7 8.3 50 268-317 69-129 (185)
377 PF14532 Sigma54_activ_2: Sigm 93.0 0.41 8.8E-06 46.0 8.1 26 180-205 21-46 (138)
378 PRK00889 adenylylsulfate kinas 93.0 0.093 2E-06 52.5 3.7 26 180-205 4-29 (175)
379 TIGR03522 GldA_ABC_ATP gliding 92.9 2.2 4.8E-05 46.8 14.8 48 266-314 142-196 (301)
380 cd02025 PanK Pantothenate kina 92.9 0.065 1.4E-06 56.0 2.6 24 182-205 1-24 (220)
381 PRK13545 tagH teichoic acids e 92.9 1.1 2.3E-05 52.6 12.7 26 180-205 50-75 (549)
382 cd00464 SK Shikimate kinase (S 92.9 0.076 1.7E-06 51.6 2.9 23 183-205 2-24 (154)
383 TIGR02314 ABC_MetN D-methionin 92.9 1.8 4E-05 48.4 14.2 26 180-205 31-56 (343)
384 PTZ00088 adenylate kinase 1; P 92.9 0.54 1.2E-05 49.4 9.4 24 182-205 8-31 (229)
385 PRK00279 adk adenylate kinase; 92.9 0.39 8.4E-06 49.9 8.4 24 182-205 2-25 (215)
386 PRK11231 fecE iron-dicitrate t 92.9 2.3 5E-05 45.3 14.6 25 180-204 28-52 (255)
387 PF07726 AAA_3: ATPase family 92.9 0.046 1E-06 51.5 1.2 27 183-209 2-28 (131)
388 PF00910 RNA_helicase: RNA hel 92.8 0.063 1.4E-06 49.2 2.1 23 183-205 1-23 (107)
389 COG0468 RecA RecA/RadA recombi 92.8 0.48 1E-05 51.1 9.1 100 170-286 49-152 (279)
390 cd03281 ABC_MSH5_euk MutS5 hom 92.8 0.22 4.8E-06 51.7 6.4 23 180-202 29-51 (213)
391 PF01583 APS_kinase: Adenylyls 92.8 0.095 2.1E-06 51.5 3.4 28 180-207 2-29 (156)
392 PHA00729 NTP-binding motif con 92.8 0.1 2.2E-06 54.3 3.8 26 179-204 16-41 (226)
393 PRK08533 flagellar accessory p 92.8 0.59 1.3E-05 49.2 9.7 25 180-204 24-48 (230)
394 PRK10771 thiQ thiamine transpo 92.8 1.7 3.7E-05 45.6 13.1 25 180-204 25-49 (232)
395 TIGR00416 sms DNA repair prote 92.8 0.45 9.7E-06 55.3 9.4 52 165-217 78-130 (454)
396 cd02028 UMPK_like Uridine mono 92.7 0.077 1.7E-06 53.6 2.8 24 182-205 1-24 (179)
397 PRK05439 pantothenate kinase; 92.7 0.14 3E-06 56.1 4.9 37 169-205 73-111 (311)
398 cd03282 ABC_MSH4_euk MutS4 hom 92.7 0.4 8.7E-06 49.5 8.0 44 274-317 107-158 (204)
399 PRK13946 shikimate kinase; Pro 92.6 0.095 2.1E-06 53.1 3.3 27 180-206 10-36 (184)
400 PF03308 ArgK: ArgK protein; 92.6 0.18 3.8E-06 53.3 5.2 41 165-205 14-54 (266)
401 COG1120 FepC ABC-type cobalami 92.6 1.6 3.4E-05 46.6 12.3 59 261-319 142-208 (258)
402 PRK00300 gmk guanylate kinase; 92.5 0.097 2.1E-06 53.8 3.3 26 180-205 5-30 (205)
403 COG1066 Sms Predicted ATP-depe 92.5 0.64 1.4E-05 52.0 9.6 102 162-285 74-178 (456)
404 smart00487 DEXDc DEAD-like hel 92.5 0.84 1.8E-05 45.4 10.1 40 164-206 11-51 (201)
405 PRK11889 flhF flagellar biosyn 92.5 0.32 6.9E-06 54.7 7.3 26 180-205 241-266 (436)
406 TIGR00064 ftsY signal recognit 92.5 0.5 1.1E-05 51.1 8.8 27 179-205 71-97 (272)
407 PRK13536 nodulation factor exp 92.5 0.53 1.1E-05 52.7 9.2 49 266-314 181-236 (340)
408 PRK10875 recD exonuclease V su 92.5 0.34 7.4E-06 58.2 8.2 25 180-204 167-191 (615)
409 PRK10078 ribose 1,5-bisphospho 92.5 0.11 2.3E-06 52.8 3.4 25 181-205 3-27 (186)
410 PRK11650 ugpC glycerol-3-phosp 92.4 0.59 1.3E-05 52.6 9.6 26 180-205 30-55 (356)
411 TIGR01313 therm_gnt_kin carboh 92.4 0.083 1.8E-06 52.2 2.5 22 183-204 1-22 (163)
412 COG1126 GlnQ ABC-type polar am 92.4 1.5 3.3E-05 45.1 11.4 56 262-317 141-203 (240)
413 PRK11823 DNA repair protein Ra 92.4 0.31 6.7E-06 56.5 7.4 51 166-217 65-116 (446)
414 PRK03846 adenylylsulfate kinas 92.3 0.13 2.8E-06 52.8 3.9 28 178-205 22-49 (198)
415 PRK05057 aroK shikimate kinase 92.3 0.11 2.4E-06 52.1 3.2 25 181-205 5-29 (172)
416 PRK13652 cbiO cobalt transport 92.3 2 4.3E-05 46.5 13.3 26 180-205 30-55 (277)
417 PRK14528 adenylate kinase; Pro 92.3 0.68 1.5E-05 47.0 9.1 25 181-205 2-26 (186)
418 PRK15064 ABC transporter ATP-b 92.3 1.9 4.1E-05 51.3 14.3 26 180-205 27-52 (530)
419 TIGR02524 dot_icm_DotB Dot/Icm 92.3 0.35 7.6E-06 54.3 7.6 108 180-306 134-243 (358)
420 PRK13975 thymidylate kinase; P 92.3 0.11 2.3E-06 53.0 3.2 26 181-206 3-28 (196)
421 PRK11174 cysteine/glutathione 92.3 1 2.2E-05 54.4 12.0 25 180-204 376-400 (588)
422 PRK04182 cytidylate kinase; Pr 92.2 0.12 2.6E-06 51.7 3.5 24 182-205 2-25 (180)
423 PRK11000 maltose/maltodextrin 92.2 2.3 4.9E-05 48.2 14.1 26 180-205 29-54 (369)
424 PRK10070 glycine betaine trans 92.2 2.4 5.3E-05 48.4 14.3 26 180-205 54-79 (400)
425 KOG0927 Predicted transporter 92.2 0.35 7.6E-06 55.6 7.2 48 158-205 394-441 (614)
426 PF03969 AFG1_ATPase: AFG1-lik 92.2 0.54 1.2E-05 52.9 8.9 101 180-311 62-168 (362)
427 PRK14530 adenylate kinase; Pro 92.2 0.1 2.2E-06 54.3 2.9 24 182-205 5-28 (215)
428 PRK12339 2-phosphoglycerate ki 92.2 0.12 2.7E-06 52.9 3.4 25 180-204 3-27 (197)
429 KOG0472 Leucine-rich repeat pr 92.1 0.02 4.3E-07 63.0 -2.5 49 555-605 266-314 (565)
430 TIGR03375 type_I_sec_LssB type 92.1 1.5 3.3E-05 54.0 13.5 26 180-205 491-516 (694)
431 PRK14527 adenylate kinase; Pro 92.1 0.13 2.8E-06 52.4 3.4 27 179-205 5-31 (191)
432 cd03213 ABCG_EPDR ABCG transpo 92.0 1.5 3.2E-05 44.7 11.3 25 180-204 35-59 (194)
433 PRK10762 D-ribose transporter 92.0 2.3 4.9E-05 50.3 14.3 25 180-204 30-54 (501)
434 PRK14737 gmk guanylate kinase; 92.0 0.16 3.5E-06 51.6 4.1 26 179-204 3-28 (186)
435 PRK10751 molybdopterin-guanine 92.0 0.15 3.2E-06 51.1 3.7 28 179-206 5-32 (173)
436 TIGR00665 DnaB replicative DNA 92.0 4.2 9E-05 47.1 16.2 37 169-205 184-220 (434)
437 COG1875 NYN ribonuclease and A 92.0 1 2.2E-05 49.6 10.2 32 276-307 352-385 (436)
438 TIGR00150 HI0065_YjeE ATPase, 91.9 0.22 4.8E-06 47.6 4.6 27 179-205 21-47 (133)
439 cd03299 ABC_ModC_like Archeal 91.9 2.3 5E-05 44.8 12.9 26 180-205 25-50 (235)
440 COG1936 Predicted nucleotide k 91.9 0.12 2.7E-06 51.0 2.9 20 182-201 2-21 (180)
441 PF08477 Miro: Miro-like prote 91.9 0.15 3.2E-06 47.1 3.4 23 183-205 2-24 (119)
442 TIGR03265 PhnT2 putative 2-ami 91.9 0.66 1.4E-05 52.2 9.1 26 180-205 30-55 (353)
443 PRK13549 xylose transporter AT 91.9 2.4 5.2E-05 50.2 14.3 26 180-205 31-56 (506)
444 PF03205 MobB: Molybdopterin g 91.9 0.15 3.1E-06 49.4 3.4 25 181-205 1-25 (140)
445 PRK13409 putative ATPase RIL; 91.9 2.2 4.7E-05 51.5 14.0 135 180-316 365-520 (590)
446 PRK11432 fbpC ferric transport 91.8 0.72 1.6E-05 51.8 9.4 26 180-205 32-57 (351)
447 PF00625 Guanylate_kin: Guanyl 91.8 0.12 2.7E-06 52.1 3.0 30 180-209 2-31 (183)
448 COG1419 FlhF Flagellar GTP-bin 91.8 0.4 8.7E-06 53.8 7.2 25 180-204 203-228 (407)
449 TIGR00554 panK_bact pantothena 91.8 0.22 4.9E-06 54.1 5.1 26 179-204 61-86 (290)
450 COG4088 Predicted nucleotide k 91.8 1.4 3E-05 44.9 10.1 26 181-206 2-27 (261)
451 PRK15455 PrkA family serine pr 91.8 0.18 3.8E-06 59.1 4.4 48 159-206 77-129 (644)
452 PTZ00035 Rad51 protein; Provis 91.8 0.87 1.9E-05 50.8 9.8 50 168-217 105-160 (337)
453 cd00561 CobA_CobO_BtuR ATP:cor 91.8 0.99 2.1E-05 44.6 9.1 25 181-205 3-27 (159)
454 PLN02348 phosphoribulokinase 91.7 0.31 6.7E-06 54.8 6.2 40 166-205 35-74 (395)
455 COG2607 Predicted ATPase (AAA+ 91.7 0.91 2E-05 47.3 9.0 62 148-209 50-114 (287)
456 COG0378 HypB Ni2+-binding GTPa 91.7 0.19 4.1E-06 50.6 4.0 38 180-217 13-50 (202)
457 TIGR02173 cyt_kin_arch cytidyl 91.7 0.15 3.2E-06 50.6 3.3 24 182-205 2-25 (171)
458 PRK08760 replicative DNA helic 91.6 0.74 1.6E-05 53.9 9.4 38 168-205 217-254 (476)
459 PRK09700 D-allose transporter 91.6 2.7 5.8E-05 49.8 14.3 25 180-204 31-55 (510)
460 PRK14526 adenylate kinase; Pro 91.5 2 4.4E-05 44.6 11.6 23 183-205 3-25 (211)
461 PRK12724 flagellar biosynthesi 91.5 0.56 1.2E-05 53.3 8.0 25 180-204 223-247 (432)
462 PLN02318 phosphoribulokinase/u 91.5 0.23 5E-06 58.4 5.0 35 170-204 55-89 (656)
463 PRK11607 potG putrescine trans 91.5 0.76 1.7E-05 52.1 9.2 25 180-204 45-69 (377)
464 cd02027 APSK Adenosine 5'-phos 91.5 0.14 2.9E-06 50.1 2.8 24 182-205 1-24 (149)
465 cd03285 ABC_MSH2_euk MutS2 hom 91.5 0.23 5.1E-06 51.9 4.7 24 179-202 29-52 (222)
466 cd03243 ABC_MutS_homologs The 91.5 1.5 3.3E-05 45.0 10.6 21 181-201 30-50 (202)
467 PLN03186 DNA repair protein RA 91.4 1.2 2.6E-05 49.7 10.4 50 169-218 111-166 (342)
468 PF10236 DAP3: Mitochondrial r 91.4 2.8 6E-05 46.2 13.3 44 322-365 263-306 (309)
469 COG0488 Uup ATPase components 91.4 5.7 0.00012 47.0 16.5 138 180-319 348-505 (530)
470 cd01130 VirB11-like_ATPase Typ 91.4 0.78 1.7E-05 46.5 8.3 117 166-307 14-132 (186)
471 PRK00409 recombination and DNA 91.4 0.18 3.9E-06 62.5 4.3 107 274-390 406-527 (782)
472 PRK03731 aroL shikimate kinase 91.4 0.14 3.1E-06 50.9 2.9 24 182-205 4-27 (171)
473 COG1100 GTPase SAR1 and relate 91.4 0.92 2E-05 46.8 9.1 25 181-205 6-30 (219)
474 COG0464 SpoVK ATPases of the A 91.3 0.3 6.5E-06 57.6 6.0 30 179-208 275-304 (494)
475 TIGR02788 VirB11 P-type DNA tr 91.3 0.77 1.7E-05 50.6 8.8 110 180-311 144-254 (308)
476 TIGR01447 recD exodeoxyribonuc 91.3 0.45 9.8E-06 57.0 7.4 24 181-204 161-184 (586)
477 TIGR02142 modC_ABC molybdenum 91.3 2.7 5.8E-05 47.3 13.3 25 181-205 24-48 (354)
478 PRK12597 F0F1 ATP synthase sub 91.3 0.52 1.1E-05 54.5 7.6 35 180-214 143-177 (461)
479 PRK05537 bifunctional sulfate 91.3 0.32 6.9E-06 58.1 6.1 48 159-206 370-418 (568)
480 PLN02200 adenylate kinase fami 91.3 0.17 3.6E-06 53.5 3.4 25 180-204 43-67 (234)
481 cd00820 PEPCK_HprK Phosphoenol 91.2 0.19 4.1E-06 46.1 3.2 22 180-201 15-36 (107)
482 PF03266 NTPase_1: NTPase; In 91.2 0.16 3.5E-06 50.7 3.0 23 183-205 2-24 (168)
483 COG1119 ModF ABC-type molybden 91.2 2.7 6E-05 44.1 12.0 23 182-204 59-81 (257)
484 PRK05748 replicative DNA helic 91.2 3.2 7E-05 48.3 14.2 48 169-216 192-239 (448)
485 TIGR03258 PhnT 2-aminoethylpho 91.2 0.8 1.7E-05 51.7 8.9 25 180-204 31-55 (362)
486 PRK13657 cyclic beta-1,2-gluca 91.2 1.9 4.1E-05 52.0 12.8 26 180-205 361-386 (588)
487 PRK14532 adenylate kinase; Pro 91.2 0.16 3.5E-06 51.4 3.1 22 183-204 3-24 (188)
488 COG0467 RAD55 RecA-superfamily 91.1 0.32 6.9E-06 52.2 5.4 47 170-217 12-59 (260)
489 PRK06761 hypothetical protein; 91.1 0.23 5.1E-06 53.6 4.3 27 181-207 4-30 (282)
490 PRK12678 transcription termina 91.1 0.27 5.8E-06 57.5 4.9 30 180-209 416-445 (672)
491 TIGR00073 hypB hydrogenase acc 91.1 0.19 4.2E-06 51.9 3.6 28 178-205 20-47 (207)
492 PRK12723 flagellar biosynthesi 91.0 0.56 1.2E-05 53.1 7.5 27 179-205 173-199 (388)
493 PRK13233 nifH nitrogenase redu 91.0 0.15 3.4E-06 55.0 2.9 39 181-219 3-41 (275)
494 cd03280 ABC_MutS2 MutS2 homolo 91.0 1.3 2.9E-05 45.3 9.7 21 181-201 29-49 (200)
495 PRK09825 idnK D-gluconate kina 91.0 0.19 4.1E-06 50.6 3.3 25 181-205 4-28 (176)
496 smart00072 GuKc Guanylate kina 90.9 0.22 4.9E-06 50.4 3.7 29 180-208 2-30 (184)
497 TIGR03574 selen_PSTK L-seryl-t 90.8 0.16 3.5E-06 54.1 2.7 24 182-205 1-24 (249)
498 PF03796 DnaB_C: DnaB-like hel 90.8 0.48 1E-05 50.7 6.4 49 169-217 8-56 (259)
499 PF13521 AAA_28: AAA domain; P 90.7 0.16 3.5E-06 50.2 2.5 21 183-203 2-22 (163)
500 PTZ00494 tuzin-like protein; P 90.7 2.3 5E-05 48.3 11.5 71 157-241 370-442 (664)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-59 Score=564.87 Aligned_cols=548 Identities=17% Similarity=0.203 Sum_probs=383.3
Q ss_pred HHHHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHhhhhHhhhcHHHHHHHHHHHHHHHHHhhHHHHHhh--
Q 002972 13 IVTSMVGAVHALEQASRNLDEAPKRIRSLEDFVCDLENLMRRIKQKHAYKLHNPQLDHQLKSLNSLIERLHPKIRKAR-- 90 (862)
Q Consensus 13 ~vs~l~~~~~~l~~~~~~l~~l~~~L~~l~~~L~~~~~~~~~~~~~~~~~~w~~qvr~~~yd~eD~ld~~~~~~~~~~-- 90 (862)
+.+.+.+....+......+.++++.|..|+.+++|++... .+......|...++++.|+++|.++.+.......+
T Consensus 12 ~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~---~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~ 88 (889)
T KOG4658|consen 12 LDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKR---DDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKAN 88 (889)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555566667777789999999999999999999977 55666788999999999999999999876665421
Q ss_pred Hhhhhc-cccccccchhhhhcccHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccc------ccCCccccccccCCCcC
Q 002972 91 RMVSKS-KIKNLAHVVWTSMAGDPLRKLLNSINDDLNWWLESQILAQNVEKVIELTA------QEVPTRLKVKAEQGYPI 163 (862)
Q Consensus 91 ~~~~~~-~~~~~~~~~~~~~~~~~l~~~I~~I~~~i~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~ 163 (862)
...... ...+..... .........+..+..++............ ...+.... ..+.......... +|.
T Consensus 89 ~~l~~~~~~~~~~c~~---~~~~~~~~~~~~~~~rv~~~l~~ve~l~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~ 163 (889)
T KOG4658|consen 89 DLLSTRSVERQRLCLC---GFCSKNVSDSYKYGKRVSKVLREVESLGS-KGVFEVVGESLDPREKVETRPIQSESD-VGL 163 (889)
T ss_pred HHhhhhHHHHHHHhhh---hhHhHhhhhhHhHHHHHHHHHHHHHHhcc-ccceecccccccchhhcccCCCCcccc-ccH
Confidence 111100 000000000 11112222233333333222221111100 00011000 0111111111122 888
Q ss_pred ccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC---CCccCceEEEeeeeeeecccccCCCchHHHHHHHH
Q 002972 164 SSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP---ERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARK 240 (862)
Q Consensus 164 ~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~---~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~ 240 (862)
+...+.+...|-.++. .+++|+||||+||||||++++|+.. .+| +.++ |+.+ |+++....+..+
T Consensus 164 e~~~~kl~~~L~~d~~-~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~F-d~~i------WV~V-----Sk~f~~~~iq~~ 230 (889)
T KOG4658|consen 164 ETMLEKLWNRLMEDDV-GIVGIYGMGGVGKTTLARQIFNKFDEVGNHF-DGVI------WVVV-----SKEFTTRKIQQT 230 (889)
T ss_pred HHHHHHHHHHhccCCC-CEEEEECCCcccHHHHHHHHhcccchhcccC-ceEE------EEEE-----cccccHHhHHHH
Confidence 8888777777766544 8999999999999999999999875 345 4444 5433 778888888888
Q ss_pred HHHHHHHhccccccCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHhhccCC---CceEEEEccchhhhhh-c
Q 002972 241 ISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLYDN---DCKYLVTTRNEAVYEI-T 316 (862)
Q Consensus 241 i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~~~~~l~~~~~~---gsrILvTTR~~~va~~-~ 316 (862)
|.+.+...+ ......+.++....+.+.|++|||||||||||+..+|+.+..+++. ||+|++|||+..|+.. +
T Consensus 231 Il~~l~~~~----~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m 306 (889)
T KOG4658|consen 231 ILERLGLLD----EEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAM 306 (889)
T ss_pred HHHHhccCC----cccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccc
Confidence 876553222 1112223478899999999999999999999999999999987764 6999999999999997 6
Q ss_pred cccc---c-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHHHHhhhhhccCCHHHHHHHHHHhhhhh
Q 002972 317 EAEK---V-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMGKALRKELRSEKWEKAITDLSTFA 392 (862)
Q Consensus 317 ~~~~---~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~~ig~~L~~~~~~~~W~~~l~~L~~~~ 392 (862)
++.. + .|+++|||+||.+.++.......+.++++|++++++|+|+|||+.++|+.|+.+.+..+|+.+++.+.+..
T Consensus 307 ~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~ 386 (889)
T KOG4658|consen 307 GVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSL 386 (889)
T ss_pred cCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccc
Confidence 6533 2 79999999999999987766566669999999999999999999999999999989999999999998763
Q ss_pred -ccCCCCCCccchhhhhcccccccchhhhhccCcHHHHHHHHHhcccCCCCCCChHHHHHHHHHhhh----------cch
Q 002972 393 -TCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDSRRLFIALAALSWAEPVPEACLEAIWSILVQ----------KSL 461 (862)
Q Consensus 393 -~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L~~~~k~cfl~lsiFp~~~~i~~~~L~~lW~a~g~----------~~~ 461 (862)
...++ ....|+++|.+||+.||++.|.||+|||+||+|+.|+.+.|+.+|+|+|. .+.
T Consensus 387 ~~~~~~-----------~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~ 455 (889)
T KOG4658|consen 387 AADFSG-----------MEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDV 455 (889)
T ss_pred cCCCCc-----------hhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcc
Confidence 22211 11378999999999999999999999999999999999999999999992 256
Q ss_pred HHHHHHHHHHCCCCcccC---CCCcEEeCHHHHHHHHHhhcccch----hhhccc-----ccc--ccccccccccccCcc
Q 002972 462 FSLAVCKLVEGSLLMKDD---TDPLYQVHDMVSLYLDSKTNDSIQ----MLINGL-----KAE--EIAFICPWFLIFGKE 527 (862)
Q Consensus 462 ~e~~l~~L~~rsLl~~~~---~~~~~~mHdLVr~~a~~~~~e~~~----~l~~~~-----~~~--~~~~~~~~~~~~~~~ 527 (862)
++.|+++|+++||+.... ...+|.|||+||++|..++.+.+. .++... .+. .....++.....+..
T Consensus 456 G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~ 535 (889)
T KOG4658|consen 456 GYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKI 535 (889)
T ss_pred hHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccch
Confidence 789999999999999875 346899999999999999984222 222221 010 010111111111110
Q ss_pred -hh-ccccccchhhhhccchhhhhHhhHHHH-HHHhccCCcccEEEecc-cccccccChhhccccCCCcccccccchh
Q 002972 528 -NI-KNIAEEKVELSLSVSEEKLVIITIEAI-LQALMASKSISELEVSR-ICFSGILGPRIADLISRDSQSLTVVSAE 601 (862)
Q Consensus 528 -~~-~~ls~~~l~sl~~~~~~~~~~~~l~~~-~~~l~~~~~LrvLdLs~-~~i~~~LP~~I~~L~~Lr~L~l~~s~~~ 601 (862)
.+ ......++++++...... .+..+ ..+|..++.|||||||+ ..+.+ ||++||+|.|||||+++.|.++
T Consensus 536 ~~~~~~~~~~~L~tLll~~n~~----~l~~is~~ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~I~ 608 (889)
T KOG4658|consen 536 EHIAGSSENPKLRTLLLQRNSD----WLLEISGEFFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTGIS 608 (889)
T ss_pred hhccCCCCCCccceEEEeecch----hhhhcCHHHHhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCCCcc
Confidence 11 111222466665554432 11123 44799999999999995 66788 9999999999999999998543
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.1e-42 Score=436.00 Aligned_cols=387 Identities=19% Similarity=0.227 Sum_probs=278.2
Q ss_pred hhhHhhhcHHHHHHHHHHHHHHHHHhhHHHHHhhHhhhhcccc--ccc-cchhhhhcccHHHHHHHHHHHHHHHHHHHhh
Q 002972 57 QKHAYKLHNPQLDHQLKSLNSLIERLHPKIRKARRMVSKSKIK--NLA-HVVWTSMAGDPLRKLLNSINDDLNWWLESQI 133 (862)
Q Consensus 57 ~~~~~~~w~~qvr~~~yd~eD~ld~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~l~~~I~~I~~~i~~~~~~~~ 133 (862)
-..||++.+++||++.+++++++.++... ...+.+++|+.+ ..+ ..+|+.......++.|++|.+++.+...
T Consensus 102 ~pvfy~v~p~~v~~~~g~f~~~f~~~~~~--~~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~--- 176 (1153)
T PLN03210 102 IPVFYGLDPSHVRKQTGDFGEAFEKTCQN--KTEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLN--- 176 (1153)
T ss_pred EEEEecccHHHHhhccchHHHHHHHHhcc--cchhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhc---
Confidence 35799999999999999999999876432 123456677643 222 2245554445677888888887755431
Q ss_pred hhhhhhhhhhcccccCCccccccccCCCcCccHHHHHHHHHhcC-CCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCce
Q 002972 134 LAQNVEKVIELTAQEVPTRLKVKAEQGYPISSKSKFLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGA 212 (862)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~LL~~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~ 212 (862)
..|. ...+..+|++++.+.+..++..+ .++++|+||||||+||||||+++|++...+|+..+
T Consensus 177 --------------~~~~---~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~v 239 (1153)
T PLN03210 177 --------------LTPS---NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSV 239 (1153)
T ss_pred --------------cccC---cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEE
Confidence 1111 12245779999999999988753 45899999999999999999999999998997655
Q ss_pred EEEeeeeeeecccccCC----Cch-HHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCc
Q 002972 213 VELGFGQWCSRAACNGS----KSD-YQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQ 287 (862)
Q Consensus 213 ~~~~~~~w~~~~~~~~s----~~~-~~~~l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~ 287 (862)
|++- .|+........ ... ....+.+.+...+. + ......... ..+++.+.+||+||||||||+.
T Consensus 240 -fv~~-~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il--~---~~~~~~~~~----~~~~~~L~~krvLLVLDdv~~~ 308 (1153)
T PLN03210 240 -FIDR-AFISKSMEIYSSANPDDYNMKLHLQRAFLSEIL--D---KKDIKIYHL----GAMEERLKHRKVLIFIDDLDDQ 308 (1153)
T ss_pred -Eeec-cccccchhhcccccccccchhHHHHHHHHHHHh--C---CCCcccCCH----HHHHHHHhCCeEEEEEeCCCCH
Confidence 4432 24322110000 000 01112222221111 0 011111122 4577889999999999999999
Q ss_pred hHHHHHhh---ccCCCceEEEEccchhhhhhccccc---c-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCC
Q 002972 288 DIVERFAK---LYDNDCKYLVTTRNEAVYEITEAEK---V-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGH 360 (862)
Q Consensus 288 ~~~~~l~~---~~~~gsrILvTTR~~~va~~~~~~~---~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgG 360 (862)
.+|+.+.. ++++||+||||||+..++..++... + .|++++||+||++.++... .+++++.+++++|+++|+|
T Consensus 309 ~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~G 387 (1153)
T PLN03210 309 DVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGN 387 (1153)
T ss_pred HHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCC
Confidence 99998864 4578999999999999987665433 2 6899999999999998653 2355688999999999999
Q ss_pred chHHHHHHhhhhhccCCHHHHHHHHHHhhhhhccCCCCCCccchhhhhcccccccchhhhhccCcH-HHHHHHHHhcccC
Q 002972 361 HPLTVAVMGKALRKELRSEKWEKAITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPR-DSRRLFIALAALS 439 (862)
Q Consensus 361 LPLAI~~ig~~L~~~~~~~~W~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L~~-~~k~cfl~lsiFp 439 (862)
+||||+++|++|+++ +..+|+.+++++.... ...|..+|++||++|++ ..|.||+++|+||
T Consensus 388 LPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~~-----------------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff 449 (1153)
T PLN03210 388 LPLGLNVLGSYLRGR-DKEDWMDMLPRLRNGL-----------------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLF 449 (1153)
T ss_pred CcHHHHHHHHHHcCC-CHHHHHHHHHHHHhCc-----------------cHHHHHHHHHhhhccCccchhhhhheehhhc
Confidence 999999999999976 6899999999986521 02688899999999987 5899999999999
Q ss_pred CCCCCChHHHHHHHHHhhhcchHHHHHHHHHHCCCCcccCCCCcEEeCHHHHHHHHHhhccc
Q 002972 440 WAEPVPEACLEAIWSILVQKSLFSLAVCKLVEGSLLMKDDTDPLYQVHDMVSLYLDSKTNDS 501 (862)
Q Consensus 440 ~~~~i~~~~L~~lW~a~g~~~~~e~~l~~L~~rsLl~~~~~~~~~~mHdLVr~~a~~~~~e~ 501 (862)
.+..++ . +..|.+....+ .+..++.|+++|||+... .+|.|||++|+++++.+.++
T Consensus 450 ~~~~~~--~-v~~~l~~~~~~-~~~~l~~L~~ksLi~~~~--~~~~MHdLl~~~~r~i~~~~ 505 (1153)
T PLN03210 450 NGEKVN--D-IKLLLANSDLD-VNIGLKNLVDKSLIHVRE--DIVEMHSLLQEMGKEIVRAQ 505 (1153)
T ss_pred CCCCHH--H-HHHHHHhcCCC-chhChHHHHhcCCEEEcC--CeEEhhhHHHHHHHHHHHhh
Confidence 887543 2 45555544322 455699999999998764 37999999999999987554
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=7.1e-38 Score=340.49 Aligned_cols=270 Identities=28% Similarity=0.440 Sum_probs=199.5
Q ss_pred CccHHHHHHHHHhc-CCCceEEEEEcCCCCCHHHHHHHHHhC--CCCCccCceEEEeeeeeeecccccCCCchHHHHHHH
Q 002972 163 ISSKSKFLRKLLEQ-EETHQVILIVGLSGIGKSCLARQVASD--PPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLAR 239 (862)
Q Consensus 163 ~~~~~~~l~~LL~~-~~~~~vI~I~G~gGiGKTtLA~~v~~~--~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~ 239 (862)
|+...+.|...|.. .++.++|+|+||||+||||||.+++++ .+.+| ++++|+++.... +. ..+.+
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f-~~v~wv~~~~~~-------~~----~~~~~ 68 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRF-DGVIWVSLSKNP-------SL----EQLLE 68 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCC-TEEEEEEEES-S-------CC----HHHHH
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccc-cccccccccccc-------cc----ccccc
Confidence 34556666555554 467999999999999999999999998 77889 778888775321 22 44455
Q ss_pred HHHHHHHHhccccccCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHhhcc---CCCceEEEEccchhhhhhc
Q 002972 240 KISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLY---DNDCKYLVTTRNEAVYEIT 316 (862)
Q Consensus 240 ~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~~~~~l~~~~---~~gsrILvTTR~~~va~~~ 316 (862)
.|...+.... .......+.+.....+.+.|.+++|||||||||+...|+.+...+ +.||+||||||+..++...
T Consensus 69 ~i~~~l~~~~---~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~ 145 (287)
T PF00931_consen 69 QILRQLGEPD---SSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSL 145 (287)
T ss_dssp HHHHHHTCC----STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTH
T ss_pred cccccccccc---cccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccc
Confidence 5544442111 111244588889999999999999999999999999998776433 4689999999999998766
Q ss_pred cc--cc--c-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHHHHhhhhhccCCHHHHHHHHHHhhhh
Q 002972 317 EA--EK--V-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMGKALRKELRSEKWEKAITDLSTF 391 (862)
Q Consensus 317 ~~--~~--~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~~ig~~L~~~~~~~~W~~~l~~L~~~ 391 (862)
+. .. + +|+++||++||.+.++.......+..++.+++|+++|+|+||||.++|++|+.+.+..+|+.+++++...
T Consensus 146 ~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~ 225 (287)
T PF00931_consen 146 GGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENS 225 (287)
T ss_dssp HSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 53 22 2 8999999999999987665333455667899999999999999999999997554778999999988765
Q ss_pred hccCCCCCCccchhhhhcccccccchhhhhccCcHHHHHHHHHhcccCCCCCCChHHHHHHHHHhhh
Q 002972 392 ATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDSRRLFIALAALSWAEPVPEACLEAIWSILVQ 458 (862)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L~~~~k~cfl~lsiFp~~~~i~~~~L~~lW~a~g~ 458 (862)
.....+ ....+..++.+||+.||++.|+||+|||+||+++.|+.+.++.+|.++|.
T Consensus 226 ~~~~~~-----------~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~ 281 (287)
T PF00931_consen 226 LRESRD-----------YDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGF 281 (287)
T ss_dssp HTCSSG-----------SCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HH
T ss_pred cccccc-----------ccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCC
Confidence 432111 12378889999999999999999999999999999999999999999875
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.47 E-value=6.6e-12 Score=158.24 Aligned_cols=279 Identities=15% Similarity=0.180 Sum_probs=169.8
Q ss_pred HHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHhcccc
Q 002972 173 LLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWK 252 (862)
Q Consensus 173 LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~lg~~~ 252 (862)
.|......+++.|+|++|.||||++.++.++. . .+.|+++.. .+.....++..+...+.......
T Consensus 25 ~l~~~~~~~~~~v~apaG~GKTtl~~~~~~~~----~-~~~w~~l~~----------~d~~~~~f~~~l~~~l~~~~~~~ 89 (903)
T PRK04841 25 KLSGANNYRLVLVTSPAGYGKTTLISQWAAGK----N-NLGWYSLDE----------SDNQPERFASYLIAALQQATNGH 89 (903)
T ss_pred HHhcccCCCeEEEECCCCCCHHHHHHHHHHhC----C-CeEEEecCc----------ccCCHHHHHHHHHHHHHHhcCcc
Confidence 34444567899999999999999999998643 2 456665532 22233445555555553222110
Q ss_pred cc-------CCCCCCHHHHHHHHHHHhc--CCCeEEEEEcCCCch------HHHHHhhccCCCceEEEEccchhhhhhc-
Q 002972 253 KI-------KDENSDLEYLCCLLQEALY--GKSILILLDDVWEQD------IVERFAKLYDNDCKYLVTTRNEAVYEIT- 316 (862)
Q Consensus 253 ~~-------~~~~~~~~~l~~~l~~~L~--~kr~LLVLDDV~~~~------~~~~l~~~~~~gsrILvTTR~~~va~~~- 316 (862)
.. .....+.......+...+. +.+++|||||+...+ .+..+....+++.++|||||...-....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~ 169 (903)
T PRK04841 90 CSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIAN 169 (903)
T ss_pred cchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHh
Confidence 00 0111233334444444443 578999999996542 3334444456778999999985321110
Q ss_pred ----------ccccccCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHHHHhhhhhccCCHHHHHHHHH
Q 002972 317 ----------EAEKVELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMGKALRKELRSEKWEKAIT 386 (862)
Q Consensus 317 ----------~~~~~~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~~ig~~L~~~~~~~~W~~~l~ 386 (862)
+....+|+.+|+.++|....+.. -.++....|.+.|+|+|+++..++..+....... .....
T Consensus 170 l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~------~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~~ 241 (903)
T PRK04841 170 LRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP------IEAAESSRLCDDVEGWATALQLIALSARQNNSSL--HDSAR 241 (903)
T ss_pred HHhcCcceecCHHhCCCCHHHHHHHHHhccCCC------CCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhhhH
Confidence 11112799999999987665421 1235678899999999999999887775432100 01111
Q ss_pred HhhhhhccCCCCCCccchhhhhcccccccch-hhhhccCcHHHHHHHHHhcccCCCCCCChHHHHHHHHHhhhcchHHHH
Q 002972 387 DLSTFATCAPGPVSYVNEKEAENTLTIFGSF-EFSLEAMPRDSRRLFIALAALSWAEPVPEACLEAIWSILVQKSLFSLA 465 (862)
Q Consensus 387 ~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L-~lSy~~L~~~~k~cfl~lsiFp~~~~i~~~~L~~lW~a~g~~~~~e~~ 465 (862)
.+.. . +. ..+...| .-.++.||++.+..++.+|+++ .++.+.+..+. +....+..
T Consensus 242 ~~~~----~-------~~------~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l~----~~~~~~~~ 297 (903)
T PRK04841 242 RLAG----I-------NA------SHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVRVT----GEENGQMR 297 (903)
T ss_pred hhcC----C-------Cc------hhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHHc----CCCcHHHH
Confidence 1100 0 00 0233322 2237899999999999999986 34544333322 34445788
Q ss_pred HHHHHHCCCCcc-cC-CCCcEEeCHHHHHHHHHhh
Q 002972 466 VCKLVEGSLLMK-DD-TDPLYQVHDMVSLYLDSKT 498 (862)
Q Consensus 466 l~~L~~rsLl~~-~~-~~~~~~mHdLVr~~a~~~~ 498 (862)
+++|.+.+++.. .+ +...|+.|+++++|++...
T Consensus 298 L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 298 LEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred HHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 999999999753 22 3357999999999999875
No 5
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.23 E-value=1.7e-09 Score=126.55 Aligned_cols=286 Identities=17% Similarity=0.248 Sum_probs=182.4
Q ss_pred HHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHhc
Q 002972 170 LRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIG 249 (862)
Q Consensus 170 l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~lg 249 (862)
+...|....+.+++.|..++|.|||||+.+++....+. ..+- |.+.+ ..+..+.++.+.++..+.+.-
T Consensus 27 L~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~~~--~~v~------Wlsld----e~dndp~rF~~yLi~al~~~~ 94 (894)
T COG2909 27 LLDRLRRANDYRLILISAPAGFGKTTLLAQWRELAADG--AAVA------WLSLD----ESDNDPARFLSYLIAALQQAT 94 (894)
T ss_pred HHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhcCcc--ccee------EeecC----CccCCHHHHHHHHHHHHHHhC
Confidence 34444555578999999999999999999998744433 2244 44432 334445556666555444221
Q ss_pred c----cc---ccCCCCCCHHHHHHHHHHHhc--CCCeEEEEEcCC---Cc---hHHHHHhhccCCCceEEEEccchhhhh
Q 002972 250 F----WK---KIKDENSDLEYLCCLLQEALY--GKSILILLDDVW---EQ---DIVERFAKLYDNDCKYLVTTRNEAVYE 314 (862)
Q Consensus 250 ~----~~---~~~~~~~~~~~l~~~l~~~L~--~kr~LLVLDDV~---~~---~~~~~l~~~~~~gsrILvTTR~~~va~ 314 (862)
. .. .......+...+...+..-+. .++..|||||.- ++ ...+.+....|++-.+++|||+..-..
T Consensus 95 p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~ 174 (894)
T COG2909 95 PTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLG 174 (894)
T ss_pred ccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCc
Confidence 1 00 011223355556666666554 468999999964 33 345566666788999999999985433
Q ss_pred hcc-----------cccccCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHHHHhhhhhccCCHHHHHH
Q 002972 315 ITE-----------AEKVELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMGKALRKELRSEKWEK 383 (862)
Q Consensus 315 ~~~-----------~~~~~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~~ig~~L~~~~~~~~W~~ 383 (862)
... .....|+.+|+.++|....+ .+-....++.+.+...|.+-|+..++=.++++.+.+.-..
T Consensus 175 la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~------l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~ 248 (894)
T COG2909 175 LARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS------LPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLR 248 (894)
T ss_pred ccceeehhhHHhcChHhhcCChHHHHHHHHHcCC------CCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhh
Confidence 221 11226899999998776542 1112356789999999999999999888874333332222
Q ss_pred HHHHhhhhhccCCCCCCccchhhhhcccccccchhhhhccCcHHHHHHHHHhcccCCCCCCChHHHHHHHHHhhhcchHH
Q 002972 384 AITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDSRRLFIALAALSWAEPVPEACLEAIWSILVQKSLFS 463 (862)
Q Consensus 384 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L~~~~k~cfl~lsiFp~~~~i~~~~L~~lW~a~g~~~~~e 463 (862)
.+........ +|+ ..--++.||+++|..++-+|+++. +.. .+-.+..+.+.+.
T Consensus 249 ~LsG~~~~l~------dYL--------------~eeVld~Lp~~l~~FLl~~svl~~---f~~----eL~~~Ltg~~ng~ 301 (894)
T COG2909 249 GLSGAASHLS------DYL--------------VEEVLDRLPPELRDFLLQTSVLSR---FND----ELCNALTGEENGQ 301 (894)
T ss_pred hccchHHHHH------HHH--------------HHHHHhcCCHHHHHHHHHHHhHHH---hhH----HHHHHHhcCCcHH
Confidence 2221111000 011 123457999999999999999854 222 2333444455567
Q ss_pred HHHHHHHHCCCCcc--cCCCCcEEeCHHHHHHHHHhhcc
Q 002972 464 LAVCKLVEGSLLMK--DDTDPLYQVHDMVSLYLDSKTND 500 (862)
Q Consensus 464 ~~l~~L~~rsLl~~--~~~~~~~~mHdLVr~~a~~~~~e 500 (862)
..+++|.+++|+-. ++....|+.|.+..+|++.+...
T Consensus 302 amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 302 AMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 78999999998864 45667999999999999988765
No 6
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.89 E-value=2.3e-07 Score=105.77 Aligned_cols=281 Identities=15% Similarity=0.109 Sum_probs=154.5
Q ss_pred cCCCcCccHHHHHHHHHhc---CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCc-cCceEEEeeeeeeecccccCCCchH
Q 002972 158 EQGYPISSKSKFLRKLLEQ---EETHQVILIVGLSGIGKSCLARQVASDPPERF-VGGAVELGFGQWCSRAACNGSKSDY 233 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~---~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~w~~~~~~~~s~~~~ 233 (862)
+..+||+++.+.+...+.. +.....+.|+|++|+|||++++.++++..... ...+++++.. ....
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~-----------~~~~ 98 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQ-----------IDRT 98 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECC-----------cCCC
Confidence 4566899888888887744 23355678999999999999999998765432 1223333321 1112
Q ss_pred HHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhcC--CCeEEEEEcCCCch------HHHHHhhccC--CCc--
Q 002972 234 QKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYG--KSILILLDDVWEQD------IVERFAKLYD--NDC-- 301 (862)
Q Consensus 234 ~~~l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~L~~--kr~LLVLDDV~~~~------~~~~l~~~~~--~gs-- 301 (862)
...++..+...+... .......+.++....+.+.+.. ++.+||||+++... .+..+..+.. +++
T Consensus 99 ~~~~~~~i~~~l~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v 174 (394)
T PRK00411 99 RYAIFSEIARQLFGH----PPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARI 174 (394)
T ss_pred HHHHHHHHHHHhcCC----CCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeE
Confidence 234444554433210 0111222566777777777753 46899999998642 3444443321 233
Q ss_pred eEEEEccchhhhhhc--------ccccc---cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhh----hCCchHHHH
Q 002972 302 KYLVTTRNEAVYEIT--------EAEKV---ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLER----CGHHPLTVA 366 (862)
Q Consensus 302 rILvTTR~~~va~~~--------~~~~~---~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~----cgGLPLAI~ 366 (862)
.+|.++...++.... +...+ |++.++..+++...+... .....-.++..+.|++. .|..+.|+.
T Consensus 175 ~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~-~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ 253 (394)
T PRK00411 175 GVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEG-FYPGVVDDEVLDLIADLTAREHGDARVAID 253 (394)
T ss_pred EEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhh-cccCCCCHhHHHHHHHHHHHhcCcHHHHHH
Confidence 366666655433321 12222 788888888887766422 11111112333444444 466788877
Q ss_pred HHhhhh--h--c---cCCHHHHHHHHHHhhhhhccCCCCCCccchhhhhcccccccchhhhhccCcHHHHHHHHHhcccC
Q 002972 367 VMGKAL--R--K---ELRSEKWEKAITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDSRRLFIALAALS 439 (862)
Q Consensus 367 ~ig~~L--~--~---~~~~~~W~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L~~~~k~cfl~lsiFp 439 (862)
++-... . . .-+.+....+++.... ..+.-.+..||.+.|..+..++..-
T Consensus 254 ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~------------------------~~~~~~~~~L~~~~k~~L~ai~~~~ 309 (394)
T PRK00411 254 LLRRAGLIAEREGSRKVTEEDVRKAYEKSEI------------------------VHLSEVLRTLPLHEKLLLRAIVRLL 309 (394)
T ss_pred HHHHHHHHHHHcCCCCcCHHHHHHHHHHHHH------------------------HHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 764432 1 1 1245566555555421 1123467899999988777665432
Q ss_pred C--CCCCChHHHHHHHH----Hhhh----cchHHHHHHHHHHCCCCccc
Q 002972 440 W--AEPVPEACLEAIWS----ILVQ----KSLFSLAVCKLVEGSLLMKD 478 (862)
Q Consensus 440 ~--~~~i~~~~L~~lW~----a~g~----~~~~e~~l~~L~~rsLl~~~ 478 (862)
. ...+....+...-. ..+. ....-.+++.|...+||...
T Consensus 310 ~~~~~~~~~~~i~~~y~~l~~~~~~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 310 KKGGDEVTTGEVYEEYKELCEELGYEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred hcCCCcccHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 1 12344433322211 1121 13355789999999999753
No 7
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.87 E-value=3.9e-07 Score=98.19 Aligned_cols=173 Identities=19% Similarity=0.208 Sum_probs=100.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHhccccccCCCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDEN 258 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~lg~~~~~~~~~ 258 (862)
+..++.|+|++|+|||||++.+++..... ...+ .|+. .......++...+...+ |. ....
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~---~~~~----~~~~------~~~~~~~~~l~~i~~~l---G~----~~~~ 101 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQE---RVVA----AKLV------NTRVDAEDLLRMVAADF---GL----ETEG 101 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCC---CeEE----eeee------CCCCCHHHHHHHHHHHc---CC----CCCC
Confidence 35589999999999999999999886521 1111 1111 11112234555554332 32 1111
Q ss_pred CCHHHHHHHHH----HH-hcCCCeEEEEEcCCCch--HHHHHhhcc---C-CC--ceEEEEccchhhhhhcc--------
Q 002972 259 SDLEYLCCLLQ----EA-LYGKSILILLDDVWEQD--IVERFAKLY---D-ND--CKYLVTTRNEAVYEITE-------- 317 (862)
Q Consensus 259 ~~~~~l~~~l~----~~-L~~kr~LLVLDDV~~~~--~~~~l~~~~---~-~g--srILvTTR~~~va~~~~-------- 317 (862)
.+.......+. .. ..+++++||+||++... .++.+.... . .+ ..|++|.... ......
T Consensus 102 ~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~ 180 (269)
T TIGR03015 102 RDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLR 180 (269)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHH
Confidence 22222233333 22 36788999999998763 455544221 1 12 2455665443 211110
Q ss_pred ---c--ccc-cCChhhHHHHHHHHhhhcccccC-cchHHHHHHHHhhhCCchHHHHHHhhhh
Q 002972 318 ---A--EKV-ELSKDDIMEISKSILLYHSLLAE-EELPAAAESLLERCGHHPLTVAVMGKAL 372 (862)
Q Consensus 318 ---~--~~~-~L~~~ea~~Lf~~~~~~~~~~~~-~~l~~~~~~Iv~~cgGLPLAI~~ig~~L 372 (862)
. ..+ +|+.+|..+++...+...+.... .-.++..+.|++.|+|.|..|..++..+
T Consensus 181 ~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 181 QRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred hheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 0 112 79999999988877654432211 2235788999999999999999888776
No 8
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.84 E-value=2.3e-08 Score=109.89 Aligned_cols=271 Identities=16% Similarity=0.065 Sum_probs=149.0
Q ss_pred CCCcCccHHHHHHHHHhc----CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHH
Q 002972 159 QGYPISSKSKFLRKLLEQ----EETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQ 234 (862)
Q Consensus 159 ~~~g~~~~~~~l~~LL~~----~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~ 234 (862)
..+|+++..+.+..++.. ......+.++|++|+|||+||+.+++.....+. ..+. ......
T Consensus 5 ~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~~-----------~~~~~~ 69 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSG-----------PALEKP 69 (305)
T ss_pred HHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----Eecc-----------chhcCc
Confidence 456888777777777653 223556889999999999999999998754321 1110 000011
Q ss_pred HHHHHHHHHHHHHhccccc-cCCCCC-CHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHhhccCCCceEEEEccchhh
Q 002972 235 KRLARKISKFLVQIGFWKK-IKDENS-DLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLYDNDCKYLVTTRNEAV 312 (862)
Q Consensus 235 ~~l~~~i~~~l~~lg~~~~-~~~~~~-~~~~l~~~l~~~L~~kr~LLVLDDV~~~~~~~~l~~~~~~gsrILvTTR~~~v 312 (862)
..+. ..+..++...- .-++.. -.....+.+...+.+.+..+|+|+..+..++.. ..++.+-|..||+...+
T Consensus 70 ~~l~----~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~li~~t~~~~~l 142 (305)
T TIGR00635 70 GDLA----AILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DLPPFTLVGATTRAGML 142 (305)
T ss_pred hhHH----HHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceee---cCCCeEEEEecCCcccc
Confidence 1122 22222221000 000000 001233456667777777888888776665542 23446667778887544
Q ss_pred hhh----cccc-cc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHHHHhhhhhccCCHHHHHHHHH
Q 002972 313 YEI----TEAE-KV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMGKALRKELRSEKWEKAIT 386 (862)
Q Consensus 313 a~~----~~~~-~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~~ig~~L~~~~~~~~W~~~l~ 386 (862)
... ++.. .+ +++.++..+++.+.+....... .++....|++.|+|.|-.+..++..+ |....
T Consensus 143 ~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~---~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~- 210 (305)
T TIGR00635 143 TSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEI---EPEAALEIARRSRGTPRIANRLLRRV--------RDFAQ- 210 (305)
T ss_pred CHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCc---CHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHH-
Confidence 332 2221 22 7899999999988776443222 24677889999999996655444332 11000
Q ss_pred HhhhhhccCCCCCCccchhhhhcccccccchhhhhccCcHHHHHHHH-HhcccCCCCCCChHHHHHHHHHhh-hcchHHH
Q 002972 387 DLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDSRRLFI-ALAALSWAEPVPEACLEAIWSILV-QKSLFSL 464 (862)
Q Consensus 387 ~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L~~~~k~cfl-~lsiFp~~~~i~~~~L~~lW~a~g-~~~~~e~ 464 (862)
.... . . ...... ......+..+|..++++.+..+. .+..+.. .++..+.+ ....| .....+.
T Consensus 211 ~~~~-----~-~---it~~~v---~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~-~~~~~~~i---a~~lg~~~~~~~~ 274 (305)
T TIGR00635 211 VRGQ-----K-I---INRDIA---LKALEMLMIDELGLDEIDRKLLSVLIEQFQG-GPVGLKTL---AAALGEDADTIED 274 (305)
T ss_pred HcCC-----C-C---cCHHHH---HHHHHHhCCCCCCCCHHHHHHHHHHHHHhCC-CcccHHHH---HHHhCCCcchHHH
Confidence 0000 0 0 000000 11222256678899998888776 5566653 34544333 23333 2345667
Q ss_pred HHH-HHHHCCCCcccC
Q 002972 465 AVC-KLVEGSLLMKDD 479 (862)
Q Consensus 465 ~l~-~L~~rsLl~~~~ 479 (862)
.++ .|++++||...+
T Consensus 275 ~~e~~Li~~~li~~~~ 290 (305)
T TIGR00635 275 VYEPYLLQIGFLQRTP 290 (305)
T ss_pred hhhHHHHHcCCcccCC
Confidence 788 699999997543
No 9
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.81 E-value=9.1e-07 Score=99.81 Aligned_cols=284 Identities=14% Similarity=0.135 Sum_probs=151.8
Q ss_pred cCCCcCccHHHHHHHHHhc---CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCcc-----CceEEEeeeeeeecccccCC
Q 002972 158 EQGYPISSKSKFLRKLLEQ---EETHQVILIVGLSGIGKSCLARQVASDPPERFV-----GGAVELGFGQWCSRAACNGS 229 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~---~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~-----~~~~~~~~~~w~~~~~~~~s 229 (862)
+..+||+++.+.+...+.. +.....+.|+|++|+|||++++.+++....... ...+|++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~----------- 83 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ----------- 83 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC-----------
Confidence 4567899988888887764 233567899999999999999999986532211 233444331
Q ss_pred CchHHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhc--CCCeEEEEEcCCCc-----hHHHHHhhc--c--C
Q 002972 230 KSDYQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALY--GKSILILLDDVWEQ-----DIVERFAKL--Y--D 298 (862)
Q Consensus 230 ~~~~~~~l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LLVLDDV~~~-----~~~~~l~~~--~--~ 298 (862)
.......++..|...+...+. ..+....+..+....+.+.+. +++++||||+++.. +.+..+..+ . .
T Consensus 84 ~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~ 161 (365)
T TIGR02928 84 ILDTLYQVLVELANQLRGSGE--EVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDL 161 (365)
T ss_pred CCCCHHHHHHHHHHHHhhcCC--CCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCC
Confidence 111123444555444432111 111112244555555666653 46789999999866 123333333 1 1
Q ss_pred --CCceEEEEccchhhhh--------hcccccc---cCChhhHHHHHHHHhhhc--ccccCcchHHHHHHHHhhhCCchH
Q 002972 299 --NDCKYLVTTRNEAVYE--------ITEAEKV---ELSKDDIMEISKSILLYH--SLLAEEELPAAAESLLERCGHHPL 363 (862)
Q Consensus 299 --~gsrILvTTR~~~va~--------~~~~~~~---~L~~~ea~~Lf~~~~~~~--~~~~~~~l~~~~~~Iv~~cgGLPL 363 (862)
....+|.+|....... .+....+ |.+.++..+++...+... ....+++..+.+..++..++|.|-
T Consensus 162 ~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R 241 (365)
T TIGR02928 162 DNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDAR 241 (365)
T ss_pred CCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHH
Confidence 2234555554443221 1111222 688888888887776421 111223333445556777778874
Q ss_pred -HHHHHhhhh--h-----ccCCHHHHHHHHHHhhhhhccCCCCCCccchhhhhcccccccchhhhhccCcHHHHHHHHHh
Q 002972 364 -TVAVMGKAL--R-----KELRSEKWEKAITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDSRRLFIAL 435 (862)
Q Consensus 364 -AI~~ig~~L--~-----~~~~~~~W~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L~~~~k~cfl~l 435 (862)
|+..+-... . ...+.+....+.+.+.. ..+.-++..||.+.+..+..+
T Consensus 242 ~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~------------------------~~~~~~i~~l~~~~~~~l~ai 297 (365)
T TIGR02928 242 KAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIEK------------------------DRLLELIRGLPTHSKLVLLAI 297 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH------------------------HHHHHHHHcCCHHHHHHHHHH
Confidence 433322211 1 11344455544444321 112346678999888777666
Q ss_pred cccC--CCCCCChHHHHHHHHH--h--h----hcchHHHHHHHHHHCCCCccc
Q 002972 436 AALS--WAEPVPEACLEAIWSI--L--V----QKSLFSLAVCKLVEGSLLMKD 478 (862)
Q Consensus 436 siFp--~~~~i~~~~L~~lW~a--~--g----~~~~~e~~l~~L~~rsLl~~~ 478 (862)
...- .+..+....+...+.. + | ....+..++..|...+||...
T Consensus 298 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 298 ANLAANDEDPFRTGEVYEVYKEVCEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 5321 2333444444332221 1 1 123455789999999999864
No 10
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.80 E-value=4.1e-08 Score=109.06 Aligned_cols=270 Identities=13% Similarity=0.075 Sum_probs=149.7
Q ss_pred cCCCcCccHHHHHHHHHhc----CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchH
Q 002972 158 EQGYPISSKSKFLRKLLEQ----EETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDY 233 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~----~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~ 233 (862)
...+|+++..+.+..++.. ......+.|+|++|+|||+||+.+++.....+. +.+.. .. .....
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~----~~~~~-~~-------~~~~~ 92 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR----ITSGP-AL-------EKPGD 92 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE----EEecc-cc-------cChHH
Confidence 4566888888888777653 233667889999999999999999998764321 11110 00 11111
Q ss_pred HHHHHHHHHHHHHHhccccccCCCCCCH----HHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHhhccCCCceEEEEccc
Q 002972 234 QKRLARKISKFLVQIGFWKKIKDENSDL----EYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLYDNDCKYLVTTRN 309 (862)
Q Consensus 234 ~~~l~~~i~~~l~~lg~~~~~~~~~~~~----~~l~~~l~~~L~~kr~LLVLDDV~~~~~~~~l~~~~~~gsrILvTTR~ 309 (862)
+...+..++. ..---.++. ....+.+...+.+.+..+|+|+..+...+.. ..++.+-|..|||.
T Consensus 93 -------l~~~l~~l~~--~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~---~l~~~~li~at~~~ 160 (328)
T PRK00080 93 -------LAAILTNLEE--GDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRL---DLPPFTLIGATTRA 160 (328)
T ss_pred -------HHHHHHhccc--CCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceee---cCCCceEEeecCCc
Confidence 1121221110 000000011 1122344555666666677776655443321 12345667778876
Q ss_pred hhhhhh----ccc-ccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHHHHhhhhhccCCHHHHHH
Q 002972 310 EAVYEI----TEA-EKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMGKALRKELRSEKWEK 383 (862)
Q Consensus 310 ~~va~~----~~~-~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~~ig~~L~~~~~~~~W~~ 383 (862)
..+... ++. ..+ +++.++..+++.+.+...+... .++....|++.|+|.|-.+..+...+ ..|..
T Consensus 161 ~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~---~~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~ 231 (328)
T PRK00080 161 GLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEI---DEEGALEIARRSRGTPRIANRLLRRV------RDFAQ 231 (328)
T ss_pred ccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHcCCCchHHHHHHHHH------HHHHH
Confidence 544332 221 122 7899999999988776543322 24678899999999995444443322 12221
Q ss_pred HHHHhhhhhccCCCCCCccchhhhhcccccccchhhhhccCcHHHHHHHH-HhcccCCCCCCChHHHHHHHHHhhh-cch
Q 002972 384 AITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDSRRLFI-ALAALSWAEPVPEACLEAIWSILVQ-KSL 461 (862)
Q Consensus 384 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L~~~~k~cfl-~lsiFp~~~~i~~~~L~~lW~a~g~-~~~ 461 (862)
.... .. ...... ......+...+..|++..+..+. .+..|+.+ ++..+.+.. ..|. ...
T Consensus 232 ~~~~---------~~---I~~~~v---~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~---~lg~~~~~ 292 (328)
T PRK00080 232 VKGD---------GV---ITKEIA---DKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAA---ALGEERDT 292 (328)
T ss_pred HcCC---------CC---CCHHHH---HHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHH---HHCCCcch
Confidence 1000 00 000001 12334456778899998888876 66667655 455555433 3332 345
Q ss_pred HHHHHH-HHHHCCCCcccC
Q 002972 462 FSLAVC-KLVEGSLLMKDD 479 (862)
Q Consensus 462 ~e~~l~-~L~~rsLl~~~~ 479 (862)
.++.++ .|++.+||+..+
T Consensus 293 ~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 293 IEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred HHHHhhHHHHHcCCcccCC
Confidence 666777 999999997554
No 11
>PF05729 NACHT: NACHT domain
Probab=98.67 E-value=1.2e-07 Score=93.81 Aligned_cols=136 Identities=24% Similarity=0.298 Sum_probs=77.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcc-----CceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHhccccccC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPPERFV-----GGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIK 255 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~~~F~-----~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~lg~~~~~~ 255 (862)
+++.|+|.+|+||||+++.++++...... ...||+..+.. ........+...|.....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~l~~~~~--------- 63 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDI--------SDSNNSRSLADLLFDQLP--------- 63 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhh--------hhccccchHHHHHHHhhc---------
Confidence 57899999999999999999987653321 12333333221 111111233333332211
Q ss_pred CCCCCHHHHHHHHHHH-hcCCCeEEEEEcCCCchH-------------HHHHhhc-cCCCceEEEEccchhhhh---hcc
Q 002972 256 DENSDLEYLCCLLQEA-LYGKSILILLDDVWEQDI-------------VERFAKL-YDNDCKYLVTTRNEAVYE---ITE 317 (862)
Q Consensus 256 ~~~~~~~~l~~~l~~~-L~~kr~LLVLDDV~~~~~-------------~~~l~~~-~~~gsrILvTTR~~~va~---~~~ 317 (862)
........ .+... ...++++||||++++... +..+... ..++++++||||...... ...
T Consensus 64 ~~~~~~~~---~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~ 140 (166)
T PF05729_consen 64 ESIAPIEE---LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLK 140 (166)
T ss_pred cchhhhHH---HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcC
Confidence 11111111 22222 246899999999976532 1122221 356899999999987633 222
Q ss_pred cc---cc-cCChhhHHHHHHHHh
Q 002972 318 AE---KV-ELSKDDIMEISKSIL 336 (862)
Q Consensus 318 ~~---~~-~L~~~ea~~Lf~~~~ 336 (862)
.. .+ +|++++..+++++.+
T Consensus 141 ~~~~~~l~~~~~~~~~~~~~~~f 163 (166)
T PF05729_consen 141 QAQILELEPFSEEDIKQYLRKYF 163 (166)
T ss_pred CCcEEEECCCCHHHHHHHHHHHh
Confidence 22 22 899999999887765
No 12
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.56 E-value=3.9e-07 Score=95.33 Aligned_cols=195 Identities=21% Similarity=0.214 Sum_probs=93.8
Q ss_pred CcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHH---
Q 002972 161 YPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRL--- 237 (862)
Q Consensus 161 ~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l--- 237 (862)
+||+.+.+.|..++..+ ....+.|+|+.|+|||+|++.+.+.....-. .++|++.... ........+
T Consensus 2 ~gR~~el~~l~~~l~~~-~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~-~~~y~~~~~~--------~~~~~~~~~~~~ 71 (234)
T PF01637_consen 2 FGREKELEKLKELLESG-PSQHILLYGPRGSGKTSLLKEFINELKEKGY-KVVYIDFLEE--------SNESSLRSFIEE 71 (234)
T ss_dssp -S-HHHHHHHHHCHHH---SSEEEEEESTTSSHHHHHHHHHHHCT--EE-CCCHHCCTTB--------SHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhh-cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCC-cEEEEecccc--------hhhhHHHHHHHH
Confidence 58888888888888764 3568999999999999999999998753211 1222221100 111111222
Q ss_pred ---HHHHHHHHHHh-ccccc---cCCCCCCHHHHHHHHHHHhc--CCCeEEEEEcCCCch----H----HHHHhhcc---
Q 002972 238 ---ARKISKFLVQI-GFWKK---IKDENSDLEYLCCLLQEALY--GKSILILLDDVWEQD----I----VERFAKLY--- 297 (862)
Q Consensus 238 ---~~~i~~~l~~l-g~~~~---~~~~~~~~~~l~~~l~~~L~--~kr~LLVLDDV~~~~----~----~~~l~~~~--- 297 (862)
...+...+... ..... ..............+.+.+. +++++||+||+.... . ...+...+
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 11111111110 00000 00011122222333333333 346999999997655 1 12222211
Q ss_pred --CCCceEEEEccchhhhhh-c-------c---cccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchH
Q 002972 298 --DNDCKYLVTTRNEAVYEI-T-------E---AEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPL 363 (862)
Q Consensus 298 --~~gsrILvTTR~~~va~~-~-------~---~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPL 363 (862)
..+..+++++....+... . + ...+ +|+.+++++++...+... ... +.-.+..++|...+||+|.
T Consensus 152 ~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 152 LSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp ---TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HH
T ss_pred cccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHH
Confidence 223344444444433322 1 1 1112 899999999988865433 111 1234667899999999999
Q ss_pred HHHH
Q 002972 364 TVAV 367 (862)
Q Consensus 364 AI~~ 367 (862)
.|..
T Consensus 230 ~l~~ 233 (234)
T PF01637_consen 230 YLQE 233 (234)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8764
No 13
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.55 E-value=2.2e-07 Score=101.91 Aligned_cols=291 Identities=17% Similarity=0.180 Sum_probs=181.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHhccccccCCCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDEN 258 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~lg~~~~~~~~~ 258 (862)
..+.+.++|.|||||||++-++.. .+..|.+++.+++...- +.+.. +.-.+.. .++ ....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pi--------tD~~~---v~~~~ag---~~g----l~~~- 72 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPI--------TDPAL---VFPTLAG---ALG----LHVQ- 72 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hhhhcccceeeeecccc--------CchhH---hHHHHHh---hcc----cccc-
Confidence 368999999999999999999999 77889988877666432 22221 1111111 011 1111
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEEEcCCCchH-HHHHhhccC---CCceEEEEccchhhhhhcccccc-cCCh-hhHHHHH
Q 002972 259 SDLEYLCCLLQEALYGKSILILLDDVWEQDI-VERFAKLYD---NDCKYLVTTRNEAVYEITEAEKV-ELSK-DDIMEIS 332 (862)
Q Consensus 259 ~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~~-~~~l~~~~~---~gsrILvTTR~~~va~~~~~~~~-~L~~-~ea~~Lf 332 (862)
+-+.....+.....++|.++|+||..+... ...+.-.+- +.-.|+.|+|.......-....+ +|+. +++.++|
T Consensus 73 -~g~~~~~~~~~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf 151 (414)
T COG3903 73 -PGDSAVDTLVRRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELF 151 (414)
T ss_pred -cchHHHHHHHHHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHH
Confidence 112334456677788999999999866532 222221121 23378999998865554333344 4544 3788887
Q ss_pred HHHhhhcc--cccCcchHHHHHHHHhhhCCchHHHHHHhhhhhccCCHHHHHHHHHHhhhhhccCCCCCCccchhhhhcc
Q 002972 333 KSILLYHS--LLAEEELPAAAESLLERCGHHPLTVAVMGKALRKELRSEKWEKAITDLSTFATCAPGPVSYVNEKEAENT 410 (862)
Q Consensus 333 ~~~~~~~~--~~~~~~l~~~~~~Iv~~cgGLPLAI~~ig~~L~~~~~~~~W~~~l~~L~~~~~~~~~~~~~~~~~~~~~~ 410 (862)
...+.... +.-.........+|.++..|.|++|..+++..+.- ...+-..-++.--...... .. .-....
T Consensus 152 ~~ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~-~r------~a~~~~ 223 (414)
T COG3903 152 VCRAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGG-AR------LAVLRQ 223 (414)
T ss_pred HHHHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcc-cc------cchhHH
Confidence 66554332 22234445788899999999999999999988753 2233322222211111111 00 011122
Q ss_pred cccccchhhhhccCcHHHHHHHHHhcccCCCCCCChHHHHHHHHHhhhcc-----hHHHHHHHHHHCCCCcccC--CCCc
Q 002972 411 LTIFGSFEFSLEAMPRDSRRLFIALAALSWAEPVPEACLEAIWSILVQKS-----LFSLAVCKLVEGSLLMKDD--TDPL 483 (862)
Q Consensus 411 ~~I~~~L~lSy~~L~~~~k~cfl~lsiFp~~~~i~~~~L~~lW~a~g~~~-----~~e~~l~~L~~rsLl~~~~--~~~~ 483 (862)
......|..||.-|....+..|.-++.|...+... ...|.+.|... .....+..|+++|++...+ ....
T Consensus 224 qtl~asl~ws~~lLtgwe~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~ 299 (414)
T COG3903 224 QTLRASLDWSYALLTGWERALFGRLAVFVGGFDLG----LALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRAR 299 (414)
T ss_pred HhccchhhhhhHhhhhHHHHHhcchhhhhhhhccc----HHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHH
Confidence 36778899999999999999999999997766432 34566655432 2335677899999886653 2346
Q ss_pred EEeCHHHHHHHHHhhcccc
Q 002972 484 YQVHDMVSLYLDSKTNDSI 502 (862)
Q Consensus 484 ~~mHdLVr~~a~~~~~e~~ 502 (862)
|+.-+-++.|+..+..+..
T Consensus 300 ~Rl~eT~r~YalaeL~r~~ 318 (414)
T COG3903 300 YRLLETGRRYALAELHRSG 318 (414)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 7778888889888877653
No 14
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.29 E-value=8.1e-06 Score=93.64 Aligned_cols=170 Identities=19% Similarity=0.203 Sum_probs=98.5
Q ss_pred CCCcCccHH---HHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHH
Q 002972 159 QGYPISSKS---KFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQK 235 (862)
Q Consensus 159 ~~~g~~~~~---~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~ 235 (862)
..+|.+... +.+..++... ....+.++|++|+||||||+.+++.....|. .++. ... ...
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~-~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~----~l~a-----------~~~-~~~ 75 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAG-RLSSMILWGPPGTGKTTLARIIAGATDAPFE----ALSA-----------VTS-GVK 75 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcC-CCceEEEECCCCCCHHHHHHHHHHHhCCCEE----EEec-----------ccc-cHH
Confidence 445655443 3477777654 4557788999999999999999987654432 1111 000 011
Q ss_pred HHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHH-HhcCCCeEEEEEcCCCc--hHHHHHhhccCCCceEEE--Eccch
Q 002972 236 RLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQE-ALYGKSILILLDDVWEQ--DIVERFAKLYDNDCKYLV--TTRNE 310 (862)
Q Consensus 236 ~l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~-~L~~kr~LLVLDDV~~~--~~~~~l~~~~~~gsrILv--TTR~~ 310 (862)
.+ +.+.+ .... ...+++.+|++|+++.. .+.+.+.+.+..|..+++ ||.+.
T Consensus 76 ~i-r~ii~-----------------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att~n~ 131 (413)
T PRK13342 76 DL-REVIE-----------------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENP 131 (413)
T ss_pred HH-HHHHH-----------------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCCCCh
Confidence 11 11111 1111 12457889999999865 456677766666765555 34433
Q ss_pred hh------hhhcccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHHHHh
Q 002972 311 AV------YEITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMG 369 (862)
Q Consensus 311 ~v------a~~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~~ig 369 (862)
.. ...+....+ +++.++...++.+.+........+-.++....|++.|+|.|..+..+.
T Consensus 132 ~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 132 SFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred hhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 21 112222222 789999999988766432110002224677889999999987664443
No 15
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.25 E-value=3.5e-05 Score=95.42 Aligned_cols=310 Identities=18% Similarity=0.211 Sum_probs=167.2
Q ss_pred CCcCccHHHHHHHHHhc--CCCceEEEEEcCCCCCHHHHHHHHHhCCCCC---ccCceEEEeeeeeeecccccCCCchHH
Q 002972 160 GYPISSKSKFLRKLLEQ--EETHQVILIVGLSGIGKSCLARQVASDPPER---FVGGAVELGFGQWCSRAACNGSKSDYQ 234 (862)
Q Consensus 160 ~~g~~~~~~~l~~LL~~--~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~---F~~~~~~~~~~~w~~~~~~~~s~~~~~ 234 (862)
.+||+.+.+.+...++. .+...++.+.|.+|||||+|+++|.....++ |-.+.|. .+..- ..-...
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~-q~~~~--------ipl~~l 72 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFD-QFERN--------IPLSPL 72 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcc-cccCC--------CchHHH
Confidence 46888888888887765 2346799999999999999999999876543 2221111 01000 000111
Q ss_pred HHHHHHHHHH----------------HHHhcccc--------------ccCCC----CC-CHHH-----HHHHHHHHh-c
Q 002972 235 KRLARKISKF----------------LVQIGFWK--------------KIKDE----NS-DLEY-----LCCLLQEAL-Y 273 (862)
Q Consensus 235 ~~l~~~i~~~----------------l~~lg~~~--------------~~~~~----~~-~~~~-----l~~~l~~~L-~ 273 (862)
.+..+++..+ +..+|... +.+.. .+ .... ....+.... +
T Consensus 73 vq~~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~ 152 (849)
T COG3899 73 VQAFRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAE 152 (849)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhc
Confidence 1122222221 11122100 00000 00 0111 122233333 3
Q ss_pred CCCeEEEEEcCC--CchHHHHHh---hccCC----CceEEEEccchhhhh---hc--ccccc---cCChhhHHHHHHHHh
Q 002972 274 GKSILILLDDVW--EQDIVERFA---KLYDN----DCKYLVTTRNEAVYE---IT--EAEKV---ELSKDDIMEISKSIL 336 (862)
Q Consensus 274 ~kr~LLVLDDV~--~~~~~~~l~---~~~~~----gsrILvTTR~~~va~---~~--~~~~~---~L~~~ea~~Lf~~~~ 336 (862)
.++.++|+||+. |...++.+. .-.+. ...|..+........ .. ....+ ||+..+...+....+
T Consensus 153 ~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l 232 (849)
T COG3899 153 EHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATL 232 (849)
T ss_pred cCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHh
Confidence 469999999994 333333222 11110 112222222221111 11 11122 899999999887776
Q ss_pred hhcccccCcchHHHHHHHHhhhCCchHHHHHHhhhhhcc------CCHHHHHHHHHHhhhhhccCCCCCCccchhhhhcc
Q 002972 337 LYHSLLAEEELPAAAESLLERCGHHPLTVAVMGKALRKE------LRSEKWEKAITDLSTFATCAPGPVSYVNEKEAENT 410 (862)
Q Consensus 337 ~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~~ig~~L~~~------~~~~~W~~~l~~L~~~~~~~~~~~~~~~~~~~~~~ 410 (862)
+... ....+..+.|+++..|+|+-+..+-..+... .+...|..=..++... ...
T Consensus 233 ~~~~----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~----------------~~~ 292 (849)
T COG3899 233 GCTK----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGIL----------------ATT 292 (849)
T ss_pred CCcc----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCc----------------hhh
Confidence 5432 2234678899999999999999888888642 2334454322222211 111
Q ss_pred cccccchhhhhccCcHHHHHHHHHhcccCCCCCCChHHHHHHHHHhhhcchHHHHHHHHHHCCCCccc-----CC-CCc-
Q 002972 411 LTIFGSFEFSLEAMPRDSRRLFIALAALSWAEPVPEACLEAIWSILVQKSLFSLAVCKLVEGSLLMKD-----DT-DPL- 483 (862)
Q Consensus 411 ~~I~~~L~lSy~~L~~~~k~cfl~lsiFp~~~~i~~~~L~~lW~a~g~~~~~e~~l~~L~~rsLl~~~-----~~-~~~- 483 (862)
.++...+..-.+.||...|..+...||+- ..|+.+.|..++..... ..+....+.|.+..++-.+ +. ...
T Consensus 293 ~~vv~~l~~rl~kL~~~t~~Vl~~AA~iG--~~F~l~~La~l~~~~~~-~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~ 369 (849)
T COG3899 293 DAVVEFLAARLQKLPGTTREVLKAAACIG--NRFDLDTLAALAEDSPA-LEAAALLDALQEGLILPLSETYRFGSNVDIA 369 (849)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC--ccCCHHHHHHHHhhchH-HHHHHHHHHhHhhceeccccccccccccchh
Confidence 13333467788999999999999999984 55678888777764322 2334445555555444311 11 111
Q ss_pred -E-EeCHHHHHHHHHhhccc
Q 002972 484 -Y-QVHDMVSLYLDSKTNDS 501 (862)
Q Consensus 484 -~-~mHdLVr~~a~~~~~e~ 501 (862)
| ..||.|++.+.+...+.
T Consensus 370 ~Y~F~H~~vqqaaY~~i~~~ 389 (849)
T COG3899 370 TYKFLHDRVQQAAYNLIPES 389 (849)
T ss_pred hHHhhHHHHHHHHhccCchh
Confidence 2 47999999988766554
No 16
>PRK06893 DNA replication initiation factor; Validated
Probab=98.23 E-value=8.6e-06 Score=85.70 Aligned_cols=142 Identities=17% Similarity=0.158 Sum_probs=80.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHhccccccCCCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDENS 259 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~lg~~~~~~~~~~ 259 (862)
.+.+.|+|++|+|||+|++++++....+.. .+.|+++.. . . .....
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~-~~~y~~~~~---------~-~----~~~~~------------------- 84 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQR-TAIYIPLSK---------S-Q----YFSPA------------------- 84 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCC-CeEEeeHHH---------h-h----hhhHH-------------------
Confidence 457899999999999999999987543322 233333210 0 0 00000
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEcCCCc---hHHH-HHhhcc----CCCceEEEEccch----------hhhhhcccc--
Q 002972 260 DLEYLCCLLQEALYGKSILILLDDVWEQ---DIVE-RFAKLY----DNDCKYLVTTRNE----------AVYEITEAE-- 319 (862)
Q Consensus 260 ~~~~l~~~l~~~L~~kr~LLVLDDV~~~---~~~~-~l~~~~----~~gsrILvTTR~~----------~va~~~~~~-- 319 (862)
+.+.+. +.-+|||||++.. ..|+ .+...+ ..|+.+|++|.+. ++...+...
T Consensus 85 --------~~~~~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~ 155 (229)
T PRK06893 85 --------VLENLE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEI 155 (229)
T ss_pred --------HHhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCe
Confidence 111111 2358999999863 3454 222222 3466665554443 333333322
Q ss_pred -cc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHHH
Q 002972 320 -KV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAV 367 (862)
Q Consensus 320 -~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~~ 367 (862)
.+ ++++++.++++++.+...+...+ +++..-|++.+.|-.-.+..
T Consensus 156 ~~l~~pd~e~~~~iL~~~a~~~~l~l~---~~v~~~L~~~~~~d~r~l~~ 202 (229)
T PRK06893 156 YQLNDLTDEQKIIVLQRNAYQRGIELS---DEVANFLLKRLDRDMHTLFD 202 (229)
T ss_pred eeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHH
Confidence 22 78899999999887765543222 35667777777766554443
No 17
>PF13173 AAA_14: AAA domain
Probab=98.16 E-value=1.3e-05 Score=76.19 Aligned_cols=99 Identities=22% Similarity=0.319 Sum_probs=64.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHhccccccCCCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDENS 259 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~lg~~~~~~~~~~ 259 (862)
.+++.|.|+.|+|||||+++++++.. -+..++++++.. ..... ..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~--~~~~~~yi~~~~-----------~~~~~-~~--------------------- 46 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL--PPENILYINFDD-----------PRDRR-LA--------------------- 46 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc--ccccceeeccCC-----------HHHHH-Hh---------------------
Confidence 36899999999999999999998765 223455655522 11100 00
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHhhcc-C--CCceEEEEccchhhhh
Q 002972 260 DLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLY-D--NDCKYLVTTRNEAVYE 314 (862)
Q Consensus 260 ~~~~l~~~l~~~L~~kr~LLVLDDV~~~~~~~~l~~~~-~--~gsrILvTTR~~~va~ 314 (862)
+.+ ..+.+.+....++.+++||++.....|......+ . ++.+|++|+.+.....
T Consensus 47 ~~~-~~~~~~~~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~ 103 (128)
T PF13173_consen 47 DPD-LLEYFLELIKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLS 103 (128)
T ss_pred hhh-hHHHHHHhhccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHh
Confidence 000 2233333344477899999999888887666433 2 3579999999876653
No 18
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.13 E-value=3.6e-05 Score=84.30 Aligned_cols=156 Identities=22% Similarity=0.256 Sum_probs=94.8
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHH
Q 002972 167 SKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLV 246 (862)
Q Consensus 167 ~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~ 246 (862)
.+.+..++..+ .+...-+||++|+||||||+.++......|.. ++. .....+++- .+
T Consensus 36 ~~~lrr~v~~~-~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~----~sA------------v~~gvkdlr-~i----- 92 (436)
T COG2256 36 GKPLRRAVEAG-HLHSMILWGPPGTGKTTLARLIAGTTNAAFEA----LSA------------VTSGVKDLR-EI----- 92 (436)
T ss_pred CchHHHHHhcC-CCceeEEECCCCCCHHHHHHHHHHhhCCceEE----ecc------------ccccHHHHH-HH-----
Confidence 34566666654 46667799999999999999999977666531 111 111111221 11
Q ss_pred HhccccccCCCCCCHHHHHHHH-HHHhcCCCeEEEEEcCC--CchHHHHHhhccCCCceEEE--Eccchhhh------hh
Q 002972 247 QIGFWKKIKDENSDLEYLCCLL-QEALYGKSILILLDDVW--EQDIVERFAKLYDNDCKYLV--TTRNEAVY------EI 315 (862)
Q Consensus 247 ~lg~~~~~~~~~~~~~~l~~~l-~~~L~~kr~LLVLDDV~--~~~~~~~l~~~~~~gsrILv--TTR~~~va------~~ 315 (862)
.+.- +....+++.+|.+|.|. +..+-+.|.+...+|.-|+| ||-++... ..
T Consensus 93 ------------------~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR 154 (436)
T COG2256 93 ------------------IEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSR 154 (436)
T ss_pred ------------------HHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhh
Confidence 1111 22344889999999996 55778888888888987775 55555321 12
Q ss_pred cccccc-cCChhhHHHHHHHHhhhcccccC---c-chHHHHHHHHhhhCCchH
Q 002972 316 TEAEKV-ELSKDDIMEISKSILLYHSLLAE---E-ELPAAAESLLERCGHHPL 363 (862)
Q Consensus 316 ~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~---~-~l~~~~~~Iv~~cgGLPL 363 (862)
+....+ +|+.+|-.+++.+.+......-. . -.++....|+..++|---
T Consensus 155 ~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 155 ARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred hheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 222222 89999998888774432221111 1 123466778888888543
No 19
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.06 E-value=7e-06 Score=77.98 Aligned_cols=113 Identities=19% Similarity=0.274 Sum_probs=68.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCc----cCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHhccccccC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERF----VGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIK 255 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F----~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~lg~~~~~~ 255 (862)
.+.+.|+|.+|+|||+++..+++.....+ ...++|+++.. ......+...+...+.. ..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~i~~~l~~------~~ 66 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPS-----------SRTPRDFAQEILEALGL------PL 66 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHH-----------HSSHHHHHHHHHHHHT-------SS
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCC-----------CCCHHHHHHHHHHHhCc------cc
Confidence 46899999999999999999998764211 23444444321 11455666666655432 11
Q ss_pred CCCCCHHHHHHHHHHHhcCCCe-EEEEEcCCCc---hHHHHHhhcc-CCCceEEEEccc
Q 002972 256 DENSDLEYLCCLLQEALYGKSI-LILLDDVWEQ---DIVERFAKLY-DNDCKYLVTTRN 309 (862)
Q Consensus 256 ~~~~~~~~l~~~l~~~L~~kr~-LLVLDDV~~~---~~~~~l~~~~-~~gsrILvTTR~ 309 (862)
....+.+++...+.+.+...+. +||+|++... ..++.+.... ..+.++|+..+.
T Consensus 67 ~~~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 67 KSRQTSDELRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp SSTS-HHHHHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred cccCCHHHHHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 1134677777888888877655 9999999765 3344454433 345677777655
No 20
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.02 E-value=0.00038 Score=83.36 Aligned_cols=199 Identities=13% Similarity=0.074 Sum_probs=99.1
Q ss_pred cCCCcCccHHHHHHHHHhc----CCCceEEEEEcCCCCCHHHHHHHHHhCCCC-----Ccc-CceEEEeeeeeeeccccc
Q 002972 158 EQGYPISSKSKFLRKLLEQ----EETHQVILIVGLSGIGKSCLARQVASDPPE-----RFV-GGAVELGFGQWCSRAACN 227 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~----~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~-----~F~-~~~~~~~~~~w~~~~~~~ 227 (862)
+...+|+++.+.|...|.. .....++-|+|++|.|||+.++.|.+.... ..+ ..+++++.
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINC---------- 824 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEING---------- 824 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeC----------
Confidence 3445888888888777654 223457789999999999999999876531 122 23444442
Q ss_pred CCCchHHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHh-c--CCCeEEEEEcCCCch-----HHHHHhhcc-C
Q 002972 228 GSKSDYQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEAL-Y--GKSILILLDDVWEQD-----IVERFAKLY-D 298 (862)
Q Consensus 228 ~s~~~~~~~l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~L-~--~kr~LLVLDDV~~~~-----~~~~l~~~~-~ 298 (862)
..-.....++..|...+. + ..+.......+....+...+ . +...+||||+++... .+-.|..+. .
T Consensus 825 -m~Lstp~sIYqvI~qqL~--g---~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~ 898 (1164)
T PTZ00112 825 -MNVVHPNAAYQVLYKQLF--N---KKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTK 898 (1164)
T ss_pred -CccCCHHHHHHHHHHHHc--C---CCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhc
Confidence 111123344444443331 1 11111223333444444444 2 224689999997542 232333322 2
Q ss_pred CCceEEE--Eccchhh--------hhhcccccc---cCChhhHHHHHHHHhhhccc-ccCcchHHHHHHHHhhhCCchHH
Q 002972 299 NDCKYLV--TTRNEAV--------YEITEAEKV---ELSKDDIMEISKSILLYHSL-LAEEELPAAAESLLERCGHHPLT 364 (862)
Q Consensus 299 ~gsrILv--TTR~~~v--------a~~~~~~~~---~L~~~ea~~Lf~~~~~~~~~-~~~~~l~~~~~~Iv~~cgGLPLA 364 (862)
.+++|++ +|.+.++ ...++...+ |.+.++-.+++..++..... ..+..++-+++.++..-|..=.|
T Consensus 899 s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKA 978 (1164)
T PTZ00112 899 INSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKA 978 (1164)
T ss_pred cCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHH
Confidence 4565443 3332221 122222222 67888888877777653211 11222223333333333445555
Q ss_pred HHHHhhhh
Q 002972 365 VAVMGKAL 372 (862)
Q Consensus 365 I~~ig~~L 372 (862)
|.++-.+.
T Consensus 979 LDILRrAg 986 (1164)
T PTZ00112 979 LQICRKAF 986 (1164)
T ss_pred HHHHHHHH
Confidence 55444333
No 21
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.99 E-value=0.00016 Score=80.57 Aligned_cols=188 Identities=14% Similarity=0.197 Sum_probs=96.3
Q ss_pred CCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCC-ccCceEEEeeeeeeecccccCCCchHHHHH
Q 002972 159 QGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPER-FVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (862)
Q Consensus 159 ~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l 237 (862)
..+|.++..+.+..++..+ ..+.+.++|++|+||||+|+.+++..... +....++++...-+ ...
T Consensus 16 ~~~g~~~~~~~L~~~~~~~-~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~-------------~~~ 81 (337)
T PRK12402 16 DILGQDEVVERLSRAVDSP-NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF-------------DQG 81 (337)
T ss_pred HhcCCHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh-------------hcc
Confidence 4457788888888887764 34467899999999999999999876532 23333333331100 000
Q ss_pred HHHHHH---HHHHhccccccCCCCCCHHHHHHHHHHHh-----cCCCeEEEEEcCCCch--HHHHHhhc---cCCCceEE
Q 002972 238 ARKISK---FLVQIGFWKKIKDENSDLEYLCCLLQEAL-----YGKSILILLDDVWEQD--IVERFAKL---YDNDCKYL 304 (862)
Q Consensus 238 ~~~i~~---~l~~lg~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LLVLDDV~~~~--~~~~l~~~---~~~gsrIL 304 (862)
...+.. .....+. .........+.....++... .+.+-+||+||+.... ....+... .++.+++|
T Consensus 82 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~I 159 (337)
T PRK12402 82 KKYLVEDPRFAHFLGT--DKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFI 159 (337)
T ss_pred hhhhhcCcchhhhhhh--hhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEE
Confidence 000000 0000000 00000011121222222211 1344589999997552 23334332 34567788
Q ss_pred EEccchh-hhhh----cccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHH
Q 002972 305 VTTRNEA-VYEI----TEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTV 365 (862)
Q Consensus 305 vTTR~~~-va~~----~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI 365 (862)
+||.... +... +..-.. +++.++....+.+.+...+... -++....+++.++|.+-.+
T Consensus 160 l~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~---~~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 160 IATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDY---DDDGLELIAYYAGGDLRKA 223 (337)
T ss_pred EEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 7775432 2111 111111 6788888777777665443322 2467778888888875443
No 22
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=0.00026 Score=84.34 Aligned_cols=188 Identities=15% Similarity=0.196 Sum_probs=103.7
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHH
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l 237 (862)
...+|.+...+.|...+..+.-.+.+.++|..|+||||+|+.+++.+...-. . ....|.... .
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~--~---------~~~PCG~C~--s---- 78 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETG--V---------TSQPCGVCR--A---- 78 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccC--C---------CCCCCcccH--H----
Confidence 4566888888888888877654667789999999999999999886542100 0 000011000 0
Q ss_pred HHHHHHHHHHhccccccC-CCCCCHHHHHHHHHHH----hcCCCeEEEEEcCCCch--HHHHHhhcc---CCCceEEEEc
Q 002972 238 ARKISKFLVQIGFWKKIK-DENSDLEYLCCLLQEA----LYGKSILILLDDVWEQD--IVERFAKLY---DNDCKYLVTT 307 (862)
Q Consensus 238 ~~~i~~~l~~lg~~~~~~-~~~~~~~~l~~~l~~~----L~~kr~LLVLDDV~~~~--~~~~l~~~~---~~gsrILvTT 307 (862)
.+.|..- ...... ... .....++++.+.+... ..++.-++|||++.... .++.|+..+ +.+.++|+||
T Consensus 79 Cr~I~~G-~h~Dvi-EIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 79 CREIDEG-RFVDYV-EMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred HHHHhcC-CCceEE-EecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 0001000 000000 000 0111233333333222 12455689999998664 467666544 4577877777
Q ss_pred cchh-hh----hhcccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCch-HHHHH
Q 002972 308 RNEA-VY----EITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHP-LTVAV 367 (862)
Q Consensus 308 R~~~-va----~~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLP-LAI~~ 367 (862)
.+.. +. ..|....+ +++.++..+.+.+++...+... ..+..+.|++.++|.. -|+..
T Consensus 157 td~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i---d~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 157 TDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF---EPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred CChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 7653 22 12222222 7888888888887765543222 2467788999998855 45554
No 23
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.96 E-value=8.4e-05 Score=70.97 Aligned_cols=43 Identities=30% Similarity=0.389 Sum_probs=32.4
Q ss_pred cCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 162 PISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 162 g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
|++.....+...+... ..+.+.|+|.+|+|||++++.+++...
T Consensus 2 ~~~~~~~~i~~~~~~~-~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 2 GQEEAIEALREALELP-PPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred chHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 3455555666655543 356888999999999999999998764
No 24
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.92 E-value=0.00011 Score=76.89 Aligned_cols=158 Identities=22% Similarity=0.213 Sum_probs=86.1
Q ss_pred cHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHH
Q 002972 165 SKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKF 244 (862)
Q Consensus 165 ~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~ 244 (862)
.-.+.+..++.. .....+.|+|.+|+|||+||+.+++...... ..++++++. .. ......
T Consensus 24 ~~~~~l~~~~~~-~~~~~lll~G~~G~GKT~la~~~~~~~~~~~-~~~~~i~~~-------------~~----~~~~~~- 83 (226)
T TIGR03420 24 ELLAALRQLAAG-KGDRFLYLWGESGSGKSHLLQAACAAAEERG-KSAIYLPLA-------------EL----AQADPE- 83 (226)
T ss_pred HHHHHHHHHHhc-CCCCeEEEECCCCCCHHHHHHHHHHHHHhcC-CcEEEEeHH-------------HH----HHhHHH-
Confidence 455666666543 3467899999999999999999998654221 123333221 00 000000
Q ss_pred HHHhccccccCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCch---H-HHHHhhcc----CCCceEEEEccchh-----
Q 002972 245 LVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQD---I-VERFAKLY----DNDCKYLVTTRNEA----- 311 (862)
Q Consensus 245 l~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~---~-~~~l~~~~----~~gsrILvTTR~~~----- 311 (862)
+.+.+.+ .-+|||||++... . .+.+...+ ..+.++|+||+...
T Consensus 84 -----------------------~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~ 139 (226)
T TIGR03420 84 -----------------------VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPL 139 (226)
T ss_pred -----------------------HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCc
Confidence 0011222 2489999997543 2 23333322 34568999888542
Q ss_pred ----hhhhcc-ccc--c-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHHHHh
Q 002972 312 ----VYEITE-AEK--V-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMG 369 (862)
Q Consensus 312 ----va~~~~-~~~--~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~~ig 369 (862)
+...+. ... + ++++++...++...+....... -++..+.|++.++|.|..+..+-
T Consensus 140 ~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~---~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 140 RLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQL---PDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred ccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhccCCHHHHHHHH
Confidence 111221 111 2 6788777777765543222111 23556777777888877665543
No 25
>PLN03025 replication factor C subunit; Provisional
Probab=97.90 E-value=0.00018 Score=79.68 Aligned_cols=169 Identities=13% Similarity=0.169 Sum_probs=90.9
Q ss_pred CCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC-CCccCceEEEeeeeeeecccccCCCchHHHHH
Q 002972 159 QGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP-ERFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (862)
Q Consensus 159 ~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l 237 (862)
..+|.++-.+.+..++..+ ..+.+.++|++|+||||+|..+++... ..|...++.++. +..... ..
T Consensus 14 ~~~g~~~~~~~L~~~~~~~-~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~-----------sd~~~~-~~ 80 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARDG-NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA-----------SDDRGI-DV 80 (319)
T ss_pred HhcCcHHHHHHHHHHHhcC-CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc-----------cccccH-HH
Confidence 4457667777777777654 334567999999999999999998753 233322221111 111111 11
Q ss_pred HHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCch--HHHHHh---hccCCCceEEEEccch-h
Q 002972 238 ARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQD--IVERFA---KLYDNDCKYLVTTRNE-A 311 (862)
Q Consensus 238 ~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~--~~~~l~---~~~~~gsrILvTTR~~-~ 311 (862)
.+.+.+.+.+.. .. .-.++.-++|||+++... ..+.+. ...++.++++++|... .
T Consensus 81 vr~~i~~~~~~~------~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~ 141 (319)
T PLN03025 81 VRNKIKMFAQKK------VT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSK 141 (319)
T ss_pred HHHHHHHHHhcc------cc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccc
Confidence 222211111000 00 001346699999998662 233333 3335567777766443 2
Q ss_pred h----hhhcccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCch
Q 002972 312 V----YEITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHP 362 (862)
Q Consensus 312 v----a~~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLP 362 (862)
+ ...+....+ ++++++....+...+...+..-+ ++....|++.++|-.
T Consensus 142 i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDl 194 (319)
T PLN03025 142 IIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDM 194 (319)
T ss_pred cchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCH
Confidence 2 222222222 67888877777776654433222 356677888887755
No 26
>PRK09087 hypothetical protein; Validated
Probab=97.90 E-value=0.00019 Score=75.32 Aligned_cols=134 Identities=14% Similarity=0.148 Sum_probs=78.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHhccccccCCCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDENS 259 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~lg~~~~~~~~~~ 259 (862)
.+.+.|+|.+|+|||+|++.+++..... |++. ......+...+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~------~i~~-------------~~~~~~~~~~~------------------ 86 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDAL------LIHP-------------NEIGSDAANAA------------------ 86 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCE------EecH-------------HHcchHHHHhh------------------
Confidence 4578999999999999999998764321 2211 11111111110
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEcCCCc----hHHHHHh-hccCCCceEEEEccchh---------hhhhcccc---cc-
Q 002972 260 DLEYLCCLLQEALYGKSILILLDDVWEQ----DIVERFA-KLYDNDCKYLVTTRNEA---------VYEITEAE---KV- 321 (862)
Q Consensus 260 ~~~~l~~~l~~~L~~kr~LLVLDDV~~~----~~~~~l~-~~~~~gsrILvTTR~~~---------va~~~~~~---~~- 321 (862)
.+ -+|++||+... +.+-.+. .....|..||+|++... +...+... .+
T Consensus 87 -------------~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~ 151 (226)
T PRK09087 87 -------------AE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIG 151 (226)
T ss_pred -------------hc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecC
Confidence 01 27889999532 2222222 22356888999997532 22222111 12
Q ss_pred cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHHHH
Q 002972 322 ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVM 368 (862)
Q Consensus 322 ~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~~i 368 (862)
+++.++-.+++.+.+...+...+ +++..-|++.+.|..-++..+
T Consensus 152 ~pd~e~~~~iL~~~~~~~~~~l~---~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 152 EPDDALLSQVIFKLFADRQLYVD---PHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhhhhHHHHHHH
Confidence 78888888888887765433222 467788888888877666543
No 27
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.88 E-value=0.00011 Score=89.02 Aligned_cols=162 Identities=21% Similarity=0.266 Sum_probs=88.6
Q ss_pred CCCcCccHH---HHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHH
Q 002972 159 QGYPISSKS---KFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQK 235 (862)
Q Consensus 159 ~~~g~~~~~---~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~ 235 (862)
..+|.+... ..+..++..+ ....+.++|++|+||||||+.+++.....|. .++. .. ....
T Consensus 29 d~vGQe~ii~~~~~L~~~i~~~-~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~----~lna-----------~~-~~i~ 91 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIKAD-RVGSLILYGPPGVGKTTLARIIANHTRAHFS----SLNA-----------VL-AGVK 91 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHhcC-CCceEEEECCCCCCHHHHHHHHHHHhcCcce----eehh-----------hh-hhhH
Confidence 345655444 4566666654 4556789999999999999999987655442 1110 00 0001
Q ss_pred HHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHh--cCCCeEEEEEcCCC--chHHHHHhhccCCCceEEEE--ccc
Q 002972 236 RLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEAL--YGKSILILLDDVWE--QDIVERFAKLYDNDCKYLVT--TRN 309 (862)
Q Consensus 236 ~l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~L--~~kr~LLVLDDV~~--~~~~~~l~~~~~~gsrILvT--TR~ 309 (862)
.+ + +......+.+ .+++.+|||||++. ..+.+.+.+....|+.++++ |.+
T Consensus 92 di-r-----------------------~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI~aTTen 147 (725)
T PRK13341 92 DL-R-----------------------AEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTEN 147 (725)
T ss_pred HH-H-----------------------HHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCceEEEEEecCCC
Confidence 11 0 1111111111 24677999999974 45677777766777766654 333
Q ss_pred hh--hhh----hcccccc-cCChhhHHHHHHHHhhhcc----cccCcchHHHHHHHHhhhCCc
Q 002972 310 EA--VYE----ITEAEKV-ELSKDDIMEISKSILLYHS----LLAEEELPAAAESLLERCGHH 361 (862)
Q Consensus 310 ~~--va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~----~~~~~~l~~~~~~Iv~~cgGL 361 (862)
.. +.. .+....+ +|+.++...++.+.+.... .....-.++....|++.+.|.
T Consensus 148 p~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD 210 (725)
T PRK13341 148 PYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGD 210 (725)
T ss_pred hHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCC
Confidence 31 111 1111222 7888888888877654211 011111235556677777664
No 28
>PRK04195 replication factor C large subunit; Provisional
Probab=97.85 E-value=0.0002 Score=83.89 Aligned_cols=171 Identities=19% Similarity=0.201 Sum_probs=96.5
Q ss_pred cCCCcCccHHHHHHHHHhc---CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHH
Q 002972 158 EQGYPISSKSKFLRKLLEQ---EETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQ 234 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~---~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~ 234 (862)
...+|.++..+.+..++.. +...+.+.|+|++|+||||+|+.+++...- .++.++. +.....
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~----~~ielna-----------sd~r~~ 78 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGW----EVIELNA-----------SDQRTA 78 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCC----CEEEEcc-----------cccccH
Confidence 3466888888888887764 222678999999999999999999998642 1222221 111111
Q ss_pred HHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCch------HHHHHhhcc-CCCceEEEEc
Q 002972 235 KRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQD------IVERFAKLY-DNDCKYLVTT 307 (862)
Q Consensus 235 ~~l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~------~~~~l~~~~-~~gsrILvTT 307 (862)
. ....+...... .. ..+..++-+||||+++... .+..+...+ ..++.||+|+
T Consensus 79 ~-~i~~~i~~~~~------~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~ 137 (482)
T PRK04195 79 D-VIERVAGEAAT------SG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTA 137 (482)
T ss_pred H-HHHHHHHHhhc------cC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEec
Confidence 1 12222111100 00 0011367799999998652 245554433 3455677666
Q ss_pred cchh-h-----hhhcccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHHH
Q 002972 308 RNEA-V-----YEITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAV 367 (862)
Q Consensus 308 R~~~-v-----a~~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~~ 367 (862)
-+.. . ...+..-.+ +++..+....+.+.+...+...+ ++....|++.++|-.-.+..
T Consensus 138 n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain 201 (482)
T PRK04195 138 NDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAIN 201 (482)
T ss_pred cCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 4432 1 111111112 67777777777776654443322 36778899999886655443
No 29
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00034 Score=82.27 Aligned_cols=189 Identities=17% Similarity=0.202 Sum_probs=103.4
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHH
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l 237 (862)
...+|.+.-.+.|...+..+.-.+.+.++|..|+||||+|+.+++.+...-.++.- -.+...|.... -
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~------g~~~~PCG~C~------s 83 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEG------GITAQPCGQCR------A 83 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccc------cCCCCCCcccH------H
Confidence 45668888888888888876556788999999999999999998865321000000 00000111000 0
Q ss_pred HHHHHHHHHHhcccc---ccC-CCCCCHHHHHHHHHHH----hcCCCeEEEEEcCCCc--hHHHHHhhcc---CCCceEE
Q 002972 238 ARKISKFLVQIGFWK---KIK-DENSDLEYLCCLLQEA----LYGKSILILLDDVWEQ--DIVERFAKLY---DNDCKYL 304 (862)
Q Consensus 238 ~~~i~~~l~~lg~~~---~~~-~~~~~~~~l~~~l~~~----L~~kr~LLVLDDV~~~--~~~~~l~~~~---~~gsrIL 304 (862)
.+.|.. |.+. ... .....++++.+.+... ..++.-++|||++... ..++.|+..+ +.++++|
T Consensus 84 C~~I~a-----G~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FI 158 (700)
T PRK12323 84 CTEIDA-----GRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFI 158 (700)
T ss_pred HHHHHc-----CCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEE
Confidence 001100 0000 000 0112344433333322 2456679999999866 4567666554 3455544
Q ss_pred -EEccchhhhh----hcccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHH
Q 002972 305 -VTTRNEAVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVA 366 (862)
Q Consensus 305 -vTTR~~~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~ 366 (862)
+||....+.. .|....+ +++.++..+.+.+.+...+.. -..+..+.|++.++|.|.-..
T Consensus 159 LaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~---~d~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 159 LATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA---HEVNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred EEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 5554444432 2222223 678888877777766543322 123566789999999986443
No 30
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.00053 Score=83.21 Aligned_cols=185 Identities=21% Similarity=0.188 Sum_probs=102.0
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCC-c----cCceEEEeeeeeeecccccCCCch
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPER-F----VGGAVELGFGQWCSRAACNGSKSD 232 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~-F----~~~~~~~~~~~w~~~~~~~~s~~~ 232 (862)
...+|.+.-.+.+...+..+.-...+.++|+.|+||||+|+.+++.+... . +|+. |...
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~-------------C~sC--- 79 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGV-------------CSSC--- 79 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCC-------------chHH---
Confidence 45668777777788877765446677899999999999999999876422 1 1111 1100
Q ss_pred HHHHHHHHHHHHHHHhcccccc-CCCCCCHHHHHHHHHH-HhcCCCeEEEEEcCCCc--hHHHHHhhcc---CCCceEEE
Q 002972 233 YQKRLARKISKFLVQIGFWKKI-KDENSDLEYLCCLLQE-ALYGKSILILLDDVWEQ--DIVERFAKLY---DNDCKYLV 305 (862)
Q Consensus 233 ~~~~l~~~i~~~l~~lg~~~~~-~~~~~~~~~l~~~l~~-~L~~kr~LLVLDDV~~~--~~~~~l~~~~---~~gsrILv 305 (862)
..+.......+..+. .. .....++.++...+.. -..+++-++|||++... ...+.|+..+ +..+++|+
T Consensus 80 --~~i~~g~~~DviEid---Aas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFIL 154 (944)
T PRK14949 80 --VEIAQGRFVDLIEVD---AASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLL 154 (944)
T ss_pred --HHHhcCCCceEEEec---cccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 000000000000000 00 0001112222222211 12467789999999765 5667766554 34566555
Q ss_pred Eccc-hhhhh----hcccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHH
Q 002972 306 TTRN-EAVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVA 366 (862)
Q Consensus 306 TTR~-~~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~ 366 (862)
+|.+ ..+.. .|....+ +|+.++..+.+.+.+...+. .-.++....|++.++|.|--+.
T Consensus 155 aTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI---~~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 155 ATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL---PFEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred ECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 5544 43332 1222223 89999988888777654322 2224677889999999885333
No 31
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.81 E-value=0.00044 Score=71.13 Aligned_cols=51 Identities=25% Similarity=0.341 Sum_probs=34.5
Q ss_pred cCCCcCccHHHHHHHHHhc----CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCc
Q 002972 158 EQGYPISSKSKFLRKLLEQ----EETHQVILIVGLSGIGKSCLARQVASDPPERF 208 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~----~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F 208 (862)
...+|.+.-.+.+.-++.. ......+.+||++|+||||||.-+++.....|
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~ 78 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNF 78 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--E
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCe
Confidence 4666877666666555442 33477899999999999999999999987665
No 32
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00037 Score=81.49 Aligned_cols=183 Identities=17% Similarity=0.176 Sum_probs=99.0
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCC--CccCceEEEeeeeeeecccccCCCchHHH
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPE--RFVGGAVELGFGQWCSRAACNGSKSDYQK 235 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~~~~~w~~~~~~~~s~~~~~~ 235 (862)
...+|.+.-.+.+...+....-...+.++|++|+||||+|+.+++.... .+...+ | .|... .
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~c-------g----~C~sc-----~ 77 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPC-------G----ECESC-----L 77 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCC-------C----cChhh-----H
Confidence 3456777777778888877654677899999999999999999887631 111000 1 01100 0
Q ss_pred HHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHH-----hcCCCeEEEEEcCCCc--hHHHHHhhcc---CCCceEEE
Q 002972 236 RLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEA-----LYGKSILILLDDVWEQ--DIVERFAKLY---DNDCKYLV 305 (862)
Q Consensus 236 ~l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~-----L~~kr~LLVLDDV~~~--~~~~~l~~~~---~~gsrILv 305 (862)
.+.......+..+. .......+...+ +.+. +.+++-++|+|+++.. ..++.|...+ ++.+.+|+
T Consensus 78 ~i~~~~h~dv~el~-----~~~~~~vd~iR~-l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il 151 (504)
T PRK14963 78 AVRRGAHPDVLEID-----AASNNSVEDVRD-LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFIL 151 (504)
T ss_pred HHhcCCCCceEEec-----ccccCCHHHHHH-HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEE
Confidence 00000000000000 001112222221 2222 2346679999999855 4466666544 23445454
Q ss_pred Ec-cchhhhhh----cccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHH
Q 002972 306 TT-RNEAVYEI----TEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTV 365 (862)
Q Consensus 306 TT-R~~~va~~----~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI 365 (862)
+| ....+... +....+ +++.++....+.+.+...+... .++....|++.++|.+--+
T Consensus 152 ~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i---~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 152 ATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA---EPEALQLVARLADGAMRDA 214 (504)
T ss_pred EcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 44 33333221 222222 7899999888888776544322 2467788999999877533
No 33
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00064 Score=76.67 Aligned_cols=186 Identities=15% Similarity=0.144 Sum_probs=96.4
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHH
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l 237 (862)
...+|.+.-.+.+...+..+.-.+.+.++|+.|+||||+|+.+++........ ....|... ..-..+
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~-----------~~~pc~~c--~~c~~~ 82 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGI-----------TSNPCRKC--IICKEI 82 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCC-----------CCCCCCCC--HHHHHH
Confidence 35568787777788877765446778999999999999999999875421100 00001100 000000
Q ss_pred HHHHHHHHHHhccccccCCCCCCHHHHHHHHHHH----hcCCCeEEEEEcCCCch--HHHHHhhcc---CCCceEEEEcc
Q 002972 238 ARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEA----LYGKSILILLDDVWEQD--IVERFAKLY---DNDCKYLVTTR 308 (862)
Q Consensus 238 ~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LLVLDDV~~~~--~~~~l~~~~---~~gsrILvTTR 308 (862)
..... .....-........++....+... ..+++-++|+|++.... .++.+...+ ++.+++|++|.
T Consensus 83 ~~~~~-----~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~ 157 (363)
T PRK14961 83 EKGLC-----LDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATT 157 (363)
T ss_pred hcCCC-----CceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcC
Confidence 00000 000000000001222222211111 12455699999998664 466665444 34566666664
Q ss_pred ch-hhhhh----cccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHH
Q 002972 309 NE-AVYEI----TEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLT 364 (862)
Q Consensus 309 ~~-~va~~----~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLA 364 (862)
+. .+... +....+ +++.++..+.+...+...+.. -.++.+..|++.++|.|-.
T Consensus 158 ~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~---i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 158 DVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESID---TDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred ChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHH
Confidence 43 23221 111222 788888777777666543321 1235667788888887754
No 34
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.00089 Score=79.01 Aligned_cols=183 Identities=19% Similarity=0.204 Sum_probs=102.2
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHH
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l 237 (862)
...+|.+...+.+...+..+.-.+.+.++|+.|+||||+|+.+++...... +.....|.... -
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~-----------~~~~~pCg~C~------s 77 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCET-----------GVTSTPCEVCA------T 77 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCc-----------CCCCCCCccCH------H
Confidence 456688888888888887765567889999999999999999998754211 00111111000 0
Q ss_pred HHHHHHHHHHhccccc---cC-CCCCCHHHHHHHHHHH----hcCCCeEEEEEcCCCc--hHHHHHhhcc---CCCceEE
Q 002972 238 ARKISKFLVQIGFWKK---IK-DENSDLEYLCCLLQEA----LYGKSILILLDDVWEQ--DIVERFAKLY---DNDCKYL 304 (862)
Q Consensus 238 ~~~i~~~l~~lg~~~~---~~-~~~~~~~~l~~~l~~~----L~~kr~LLVLDDV~~~--~~~~~l~~~~---~~gsrIL 304 (862)
.+.+.. |.... .. .....+++....+... ..+++-++|+|++... ...+.|...+ +.+.++|
T Consensus 78 C~~I~~-----g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FI 152 (702)
T PRK14960 78 CKAVNE-----GRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFL 152 (702)
T ss_pred HHHHhc-----CCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEE
Confidence 000000 00000 00 0011233322222211 2356679999999865 4555555433 3456777
Q ss_pred EEccchh-hh----hhcccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHH
Q 002972 305 VTTRNEA-VY----EITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTV 365 (862)
Q Consensus 305 vTTR~~~-va----~~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI 365 (862)
++|.+.. +. ..+....+ +++.++..+.+.+++...+... ..+....|++.++|.+-.+
T Consensus 153 LaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~i---d~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 153 FATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAA---DQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred EEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 7776542 21 22222222 7888888888777775543222 2366778999999977443
No 35
>PRK08727 hypothetical protein; Validated
Probab=97.73 E-value=0.00079 Score=71.07 Aligned_cols=28 Identities=21% Similarity=0.383 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPER 207 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~ 207 (862)
...+.|+|.+|+|||.|++++++....+
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4579999999999999999998765433
No 36
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.70 E-value=0.00042 Score=73.27 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 168 KFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 168 ~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..+..+.... ....+.|+|++|+|||+|++.+++...
T Consensus 34 ~~l~~~~~~~-~~~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 34 AALQNALRQE-HSGYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred HHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3344444333 345789999999999999999998654
No 37
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.70 E-value=0.00081 Score=74.29 Aligned_cols=168 Identities=17% Similarity=0.150 Sum_probs=92.3
Q ss_pred CCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCC-----CccCceEEEeeeeeeecccccCCCchH
Q 002972 159 QGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPE-----RFVGGAVELGFGQWCSRAACNGSKSDY 233 (862)
Q Consensus 159 ~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~-----~F~~~~~~~~~~~w~~~~~~~~s~~~~ 233 (862)
..+|.+...+.+...+..+.-.+.+.++|+.|+||||+|+.+++..-. .+++ +..|.... +....
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D------~~~~~~~~----~~~i~ 74 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVD------IIEFKPIN----KKSIG 74 (313)
T ss_pred hccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCC------eEEecccc----CCCCC
Confidence 345666666777777766555778899999999999999999985421 1222 11111100 11111
Q ss_pred HHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCC--CchHHHHHhhcc---CCCceEEEEcc
Q 002972 234 QKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVW--EQDIVERFAKLY---DNDCKYLVTTR 308 (862)
Q Consensus 234 ~~~l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~--~~~~~~~l~~~~---~~gsrILvTTR 308 (862)
..+ .+.+.+.+.. .-..+++-++|+||++ +.+.++.+...+ ++++.+|++|.
T Consensus 75 v~~-ir~~~~~~~~----------------------~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~ 131 (313)
T PRK05564 75 VDD-IRNIIEEVNK----------------------KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCE 131 (313)
T ss_pred HHH-HHHHHHHHhc----------------------CcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence 111 1112111100 0112445566777664 445677777555 45788888876
Q ss_pred chhhh-h----hcccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHH
Q 002972 309 NEAVY-E----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVA 366 (862)
Q Consensus 309 ~~~va-~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~ 366 (862)
+.+.. . .+..... ++++++....+.+.+. .-.++.++.++..++|.|.-+.
T Consensus 132 ~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 132 NLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYN-------DIKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred ChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhc-------CCCHHHHHHHHHHcCCCHHHHH
Confidence 55321 1 1221222 6777877665544331 1113456788999999987554
No 38
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.00063 Score=79.84 Aligned_cols=187 Identities=17% Similarity=0.168 Sum_probs=95.2
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHH
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l 237 (862)
...+|.+.-.+.+...+..+.-...+.++|+.|+||||+|+.+++....... .....|.... .
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~-----------~~~~pCg~C~------s 78 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTG-----------VTAEPCNKCE------N 78 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCC-----------CCCCCCcccH------H
Confidence 3455777777777777776545667889999999999999999985432100 0000010000 0
Q ss_pred HHHHHHHHHHhcccc-----c-cCCCCCCHHHHHHHHHHH-hcCCCeEEEEEcCCCc--hHHHHHhhcc---CCCceEE-
Q 002972 238 ARKISKFLVQIGFWK-----K-IKDENSDLEYLCCLLQEA-LYGKSILILLDDVWEQ--DIVERFAKLY---DNDCKYL- 304 (862)
Q Consensus 238 ~~~i~~~l~~lg~~~-----~-~~~~~~~~~~l~~~l~~~-L~~kr~LLVLDDV~~~--~~~~~l~~~~---~~gsrIL- 304 (862)
...+ ......+ . ......+..++...+... ..+++-++|+|++... ..++.|...+ +..+.+|
T Consensus 79 C~~i----~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL 154 (546)
T PRK14957 79 CVAI----NNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFIL 154 (546)
T ss_pred HHHH----hcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEE
Confidence 0000 0000000 0 000001112222222211 2456779999999755 4466666544 3455555
Q ss_pred EEccchhhhh----hcccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchH-HHHHH
Q 002972 305 VTTRNEAVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPL-TVAVM 368 (862)
Q Consensus 305 vTTR~~~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPL-AI~~i 368 (862)
+||....+.. .+....+ +++.++....+.+.+...+. .-.++....|++.++|-+- |+..+
T Consensus 155 ~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi---~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 155 ATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI---NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred EECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5554333332 1222222 78888877666665544322 2224566778888888553 44333
No 39
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.69 E-value=0.00033 Score=83.20 Aligned_cols=187 Identities=16% Similarity=0.173 Sum_probs=99.8
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHH
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l 237 (862)
...+|.+.-.+.+...+..+.-.+.+.++|..|+||||+|+.+++.....-. .....|.... .
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~-----------~~~~pCg~C~------s 78 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENA-----------QHGEPCGVCQ------S 78 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCC-----------CCCCCCcccH------H
Confidence 4566888888888888887655678899999999999999999886531100 0000111000 0
Q ss_pred HHHHHHHHHHhccccccCCCCCCHHHHHHHHHHH----hcCCCeEEEEEcCCCch--HHHHHhhcc---CCCceEEEEcc
Q 002972 238 ARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEA----LYGKSILILLDDVWEQD--IVERFAKLY---DNDCKYLVTTR 308 (862)
Q Consensus 238 ~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LLVLDDV~~~~--~~~~l~~~~---~~gsrILvTTR 308 (862)
.+.+..- ...+...-.......++.+.+.+... ..+++-++|+|++.... ..+.|+..+ +..+++|++|.
T Consensus 79 Cr~i~~g-~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTt 157 (709)
T PRK08691 79 CTQIDAG-RYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATT 157 (709)
T ss_pred HHHHhcc-CccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 0000000 00000000000111222222222211 23566799999998653 344555433 34567776665
Q ss_pred chh-hhh----hcccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHH
Q 002972 309 NEA-VYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTV 365 (862)
Q Consensus 309 ~~~-va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI 365 (862)
+.. +.. .|....+ +++.++....+.+++...+... .++....|++.++|.+.-+
T Consensus 158 d~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i---d~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 158 DPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY---EPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred CccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHhCCCHHHH
Confidence 432 221 1111122 6888888877777765443222 2367788999999988543
No 40
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.66 E-value=9.3e-05 Score=74.58 Aligned_cols=48 Identities=31% Similarity=0.386 Sum_probs=33.5
Q ss_pred CCcCccHHHHHHHHHh--cCCCceEEEEEcCCCCCHHHHHHHHHhCCCCC
Q 002972 160 GYPISSKSKFLRKLLE--QEETHQVILIVGLSGIGKSCLARQVASDPPER 207 (862)
Q Consensus 160 ~~g~~~~~~~l~~LL~--~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~ 207 (862)
.+||++..+.+..++. .....+.+.|+|.+|+|||+|.++++.....+
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4689999999999884 33457899999999999999999999887654
No 41
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.66 E-value=0.00044 Score=79.30 Aligned_cols=188 Identities=14% Similarity=0.114 Sum_probs=98.7
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHH
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l 237 (862)
...+|.+.-.+.+...+..+.-...+.++|+.|+||||+|+.+++......... ...|..... -..+
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~-----------~~pCg~C~s--C~~i 84 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIG-----------NEPCNECTS--CLEI 84 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccC-----------ccccCCCcH--HHHH
Confidence 345677777777887777654356789999999999999999998764221100 001110100 0111
Q ss_pred HHHHHHHHHHhccccccCCCCCCHHHHHHHHHHH-hcCCCeEEEEEcCCCc--hHHHHHhhcc---CCCceEE-EEccch
Q 002972 238 ARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEA-LYGKSILILLDDVWEQ--DIVERFAKLY---DNDCKYL-VTTRNE 310 (862)
Q Consensus 238 ~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~-L~~kr~LLVLDDV~~~--~~~~~l~~~~---~~gsrIL-vTTR~~ 310 (862)
.......+..+.. .......++.++...+... ..++.-++|+|++... +.++.|+..+ +....+| .||...
T Consensus 85 ~~g~~~dviEIda--as~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~ 162 (484)
T PRK14956 85 TKGISSDVLEIDA--ASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFH 162 (484)
T ss_pred HccCCccceeech--hhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChh
Confidence 1110000000000 0000011222222222211 2456679999999855 5577776554 2344544 555544
Q ss_pred hhhh----hcccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchH
Q 002972 311 AVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPL 363 (862)
Q Consensus 311 ~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPL 363 (862)
.+.. .|..... +++.++..+.+.+.+...+.. -.++....|++.++|.+-
T Consensus 163 kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~---~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 163 KIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQ---YDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred hccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCChHH
Confidence 4432 2222233 788888777777766543321 124667889999998874
No 42
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.64 E-value=0.001 Score=75.07 Aligned_cols=51 Identities=27% Similarity=0.395 Sum_probs=37.8
Q ss_pred cCCCcCccHHHHHHHHHhcC------------CCceEEEEEcCCCCCHHHHHHHHHhCCCCCc
Q 002972 158 EQGYPISSKSKFLRKLLEQE------------ETHQVILIVGLSGIGKSCLARQVASDPPERF 208 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~------------~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F 208 (862)
...+|+++..+.+...+... ..++-+.++|++|+|||+||+.+++.....|
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~ 184 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF 184 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCE
Confidence 34557888777777765321 1245699999999999999999999876544
No 43
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.62 E-value=0.00083 Score=78.32 Aligned_cols=187 Identities=14% Similarity=0.157 Sum_probs=99.5
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCC--ccCceEEEeeeeeeecccccCCCchHHH
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPER--FVGGAVELGFGQWCSRAACNGSKSDYQK 235 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~w~~~~~~~~s~~~~~~ 235 (862)
...+|.+.-.+.+...+..+.-...+.++|+.|+||||+|+.+++..... ...+. +...|.... .
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~---------~~~~C~~C~--~-- 87 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENT---------TIKTCEQCT--N-- 87 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCc---------CcCCCCCCh--H--
Confidence 34557777777777766665446788999999999999999999876421 00000 000111000 0
Q ss_pred HHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHH----hcCCCeEEEEEcCCCc--hHHHHHhhcc---CCCceEE-E
Q 002972 236 RLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEA----LYGKSILILLDDVWEQ--DIVERFAKLY---DNDCKYL-V 305 (862)
Q Consensus 236 ~l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LLVLDDV~~~--~~~~~l~~~~---~~gsrIL-v 305 (862)
...+... .......-.......++++...+... +.+++-++|+|+++.. ..++.|...+ ++.+.+| +
T Consensus 88 --C~~i~~~-~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~a 164 (507)
T PRK06645 88 --CISFNNH-NHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFA 164 (507)
T ss_pred --HHHHhcC-CCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEE
Confidence 0000000 00000000000111333333333222 2456779999999865 4577666544 3455544 5
Q ss_pred Eccchhhhhhc----ccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchH
Q 002972 306 TTRNEAVYEIT----EAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPL 363 (862)
Q Consensus 306 TTR~~~va~~~----~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPL 363 (862)
||+...+.... ....+ +++.++....+.+.+...+... .++....|++.++|.+-
T Consensus 165 Tte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i---e~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 165 TTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT---DIEALRIIAYKSEGSAR 224 (507)
T ss_pred eCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHH
Confidence 55555544322 11222 7888888888887776543222 23566778888888664
No 44
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.62 E-value=0.00059 Score=73.57 Aligned_cols=133 Identities=19% Similarity=0.295 Sum_probs=83.0
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHH
Q 002972 166 KSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFL 245 (862)
Q Consensus 166 ~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l 245 (862)
....+..+++.+ ....+.+||++|+||||||+.++..-+.+- .+++.+.. .. ......+.+.++--+
T Consensus 149 q~gllrs~ieq~-~ipSmIlWGppG~GKTtlArlia~tsk~~S---yrfvelSA----t~---a~t~dvR~ife~aq~-- 215 (554)
T KOG2028|consen 149 QDGLLRSLIEQN-RIPSMILWGPPGTGKTTLARLIASTSKKHS---YRFVELSA----TN---AKTNDVRDIFEQAQN-- 215 (554)
T ss_pred cchHHHHHHHcC-CCCceEEecCCCCchHHHHHHHHhhcCCCc---eEEEEEec----cc---cchHHHHHHHHHHHH--
Confidence 345667777664 566778999999999999999998876541 33443321 11 222333333222110
Q ss_pred HHhccccccCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCC--CchHHHHHhhccCCCceEEE--Eccchhhhh------h
Q 002972 246 VQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVW--EQDIVERFAKLYDNDCKYLV--TTRNEAVYE------I 315 (862)
Q Consensus 246 ~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~--~~~~~~~l~~~~~~gsrILv--TTR~~~va~------~ 315 (862)
...+.++|.+|.+|.|. +..+-+.|.+...+|.-++| ||-++...- .
T Consensus 216 -----------------------~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSR 272 (554)
T KOG2028|consen 216 -----------------------EKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSR 272 (554)
T ss_pred -----------------------HHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhc
Confidence 12355788999999995 55677888887778886664 676664321 2
Q ss_pred cccccc-cCChhhHHHHHHH
Q 002972 316 TEAEKV-ELSKDDIMEISKS 334 (862)
Q Consensus 316 ~~~~~~-~L~~~ea~~Lf~~ 334 (862)
|.+..+ +|+.++-..++.+
T Consensus 273 C~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 273 CRVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred cceeEeccCCHHHHHHHHHH
Confidence 222222 7888887777765
No 45
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.60 E-value=0.0018 Score=71.45 Aligned_cols=171 Identities=15% Similarity=0.157 Sum_probs=92.3
Q ss_pred CCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCC-CccCceEEEeeeeeeecccccCCCchHHHHH
Q 002972 159 QGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPE-RFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (862)
Q Consensus 159 ~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l 237 (862)
..+|.++..+.+..++... ..+.+.++|.+|+||||+|+.+++.... .+....+.++. +.......+
T Consensus 18 ~~~g~~~~~~~l~~~i~~~-~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~-----------~~~~~~~~~ 85 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKEK-NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNA-----------SDERGIDVI 85 (319)
T ss_pred HhcCcHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecc-----------ccccchHHH
Confidence 4557777788888887654 3445799999999999999999987542 22211111110 111111111
Q ss_pred HHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCc--hHHHHHhh---ccCCCceEEEEccch-h
Q 002972 238 ARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQ--DIVERFAK---LYDNDCKYLVTTRNE-A 311 (862)
Q Consensus 238 ~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~--~~~~~l~~---~~~~gsrILvTTR~~-~ 311 (862)
...+...... .+ .....+-++++|+++.. +..+.+.. ..++.+++|+++... .
T Consensus 86 ~~~i~~~~~~------~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~ 144 (319)
T PRK00440 86 RNKIKEFART------AP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSK 144 (319)
T ss_pred HHHHHHHHhc------CC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccc
Confidence 1111111100 00 00123468999998754 23334433 234556777766432 1
Q ss_pred hh----hhcccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHH
Q 002972 312 VY----EITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTV 365 (862)
Q Consensus 312 va----~~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI 365 (862)
+. ..+..... +++.++....+...+...+..- .++....+++.++|.+--+
T Consensus 145 l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i---~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 145 IIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEI---TDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred cchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 21 12222222 7888888777777665443322 2456778888888876543
No 46
>PF14516 AAA_35: AAA-like domain
Probab=97.58 E-value=0.012 Score=65.48 Aligned_cols=202 Identities=15% Similarity=0.154 Sum_probs=107.5
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHH
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l 237 (862)
+..+.|.+-.+.+.+-+... -..+.|.|+-.+|||+|...+.+..+.. ...++++|+...-+. ...+.+.....+
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~--G~~~~I~apRq~GKTSll~~l~~~l~~~-~~~~v~id~~~~~~~--~~~~~~~f~~~~ 85 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQP--GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GYRCVYIDLQQLGSA--IFSDLEQFLRWF 85 (331)
T ss_pred CcccCchHHHHHHHHHHhcC--CCEEEEECcccCCHHHHHHHHHHHHHHC-CCEEEEEEeecCCCc--ccCCHHHHHHHH
Confidence 33446664444444434332 2489999999999999999998877633 234677777542110 000222234444
Q ss_pred HHHHHHHHHHhccccc----cCCCCCCHHHHHHHHHHHh-c--CCCeEEEEEcCCCc--------hHHHHHhhccCC---
Q 002972 238 ARKISKFLVQIGFWKK----IKDENSDLEYLCCLLQEAL-Y--GKSILILLDDVWEQ--------DIVERFAKLYDN--- 299 (862)
Q Consensus 238 ~~~i~~~l~~lg~~~~----~~~~~~~~~~l~~~l~~~L-~--~kr~LLVLDDV~~~--------~~~~~l~~~~~~--- 299 (862)
...+.+.| +.... ..............+.+.+ . +++.+|+||+++.. +-+..++.|...
T Consensus 86 ~~~i~~~L---~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~ 162 (331)
T PF14516_consen 86 CEEISRQL---KLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKN 162 (331)
T ss_pred HHHHHHHc---CCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhccc
Confidence 44444433 21100 0011123333444455442 2 58999999999744 123333333321
Q ss_pred ----Cc-e-EEEEccchhhhhhccc--------ccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHH
Q 002972 300 ----DC-K-YLVTTRNEAVYEITEA--------EKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLT 364 (862)
Q Consensus 300 ----gs-r-ILvTTR~~~va~~~~~--------~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLA 364 (862)
.. + |++.+........... -.+ +++.+|...|..+.-. .-. .+..+.|...+||+|.-
T Consensus 163 ~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~----~~~---~~~~~~l~~~tgGhP~L 235 (331)
T PF14516_consen 163 NPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGL----EFS---QEQLEQLMDWTGGHPYL 235 (331)
T ss_pred CcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhc----cCC---HHHHHHHHHHHCCCHHH
Confidence 11 2 2222211111111100 011 6899999888665421 111 23488999999999999
Q ss_pred HHHHhhhhhc
Q 002972 365 VAVMGKALRK 374 (862)
Q Consensus 365 I~~ig~~L~~ 374 (862)
+..++..+..
T Consensus 236 v~~~~~~l~~ 245 (331)
T PF14516_consen 236 VQKACYLLVE 245 (331)
T ss_pred HHHHHHHHHH
Confidence 9999999975
No 47
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.014 Score=65.57 Aligned_cols=111 Identities=22% Similarity=0.204 Sum_probs=70.0
Q ss_pred CCcCccHHHHHHHHHhc---CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCc-eEEEeeeeeeecccccCCCchHHH
Q 002972 160 GYPISSKSKFLRKLLEQ---EETHQVILIVGLSGIGKSCLARQVASDPPERFVGG-AVELGFGQWCSRAACNGSKSDYQK 235 (862)
Q Consensus 160 ~~g~~~~~~~l~~LL~~---~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~-~~~~~~~~w~~~~~~~~s~~~~~~ 235 (862)
..+|+++.+.+...+.. +..+.-+.|+|.+|.|||+.++.+.+......... ++++|... .....
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~-----------~~t~~ 87 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLE-----------LRTPY 87 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeee-----------CCCHH
Confidence 44788888877776654 22344599999999999999999999887554444 66666522 11223
Q ss_pred HHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhc--CCCeEEEEEcCCCc
Q 002972 236 RLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALY--GKSILILLDDVWEQ 287 (862)
Q Consensus 236 ~l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LLVLDDV~~~ 287 (862)
+++..|...+ + +.+.......+....+.+.+. ++.+++|||+++..
T Consensus 88 ~i~~~i~~~~---~---~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L 135 (366)
T COG1474 88 QVLSKILNKL---G---KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDAL 135 (366)
T ss_pred HHHHHHHHHc---C---CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhh
Confidence 4444444332 2 122222344455556666654 47899999999754
No 48
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.56 E-value=0.0018 Score=77.28 Aligned_cols=184 Identities=19% Similarity=0.204 Sum_probs=101.0
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHH
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l 237 (862)
...+|.+.-.+.+...+..+.-...+.++|..|+||||+|+.+++....... .....|... ..
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~-----------~~~~pCg~C------~~ 78 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETG-----------ITATPCGEC------DN 78 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccC-----------CCCCCCCCC------HH
Confidence 4566878777888888876544566889999999999999999987542100 000112110 01
Q ss_pred HHHHHHHHHHhcccc---ccCCC-CCCHHHHHHHHHHH----hcCCCeEEEEEcCCCc--hHHHHHhhcc---CCCceEE
Q 002972 238 ARKISKFLVQIGFWK---KIKDE-NSDLEYLCCLLQEA----LYGKSILILLDDVWEQ--DIVERFAKLY---DNDCKYL 304 (862)
Q Consensus 238 ~~~i~~~l~~lg~~~---~~~~~-~~~~~~l~~~l~~~----L~~kr~LLVLDDV~~~--~~~~~l~~~~---~~gsrIL 304 (862)
.+.|.. |... ..... ...+++....+... ..+++-++|||++... ...+.|+..+ +..+++|
T Consensus 79 C~~i~~-----g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FI 153 (647)
T PRK07994 79 CREIEQ-----GRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFL 153 (647)
T ss_pred HHHHHc-----CCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEE
Confidence 111110 0000 00000 11233322222211 2456779999999855 4566666544 3455555
Q ss_pred E-Eccchhhhhh----cccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHH
Q 002972 305 V-TTRNEAVYEI----TEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVA 366 (862)
Q Consensus 305 v-TTR~~~va~~----~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~ 366 (862)
+ ||....+... |....+ +|+.++....+.+.+...+. .-.++....|++.++|.|--+.
T Consensus 154 L~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i---~~e~~aL~~Ia~~s~Gs~R~Al 218 (647)
T PRK07994 154 LATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI---PFEPRALQLLARAADGSMRDAL 218 (647)
T ss_pred EecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 4 4444444321 222222 78999888877776644322 1224566789999999876443
No 49
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.56 E-value=0.0013 Score=76.39 Aligned_cols=190 Identities=14% Similarity=0.188 Sum_probs=95.1
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHH
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l 237 (862)
...+|.+.-.+.+...+..+.-.+.+.++|++|+||||+|+.+++.....= |.....|... ..-..+
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~-----------~~~~~pc~~c--~~c~~i 80 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCEN-----------RKGVEPCNEC--RACRSI 80 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcccc-----------CCCCCCCccc--HHHHHH
Confidence 456677777777777777654456789999999999999999988653110 0000001000 000000
Q ss_pred HHHHHHHHHHhccccccCC-CCCCHHHHHHHHHHH-----hcCCCeEEEEEcCCCc--hHHHHHhhcc---CCCceEEEE
Q 002972 238 ARKISKFLVQIGFWKKIKD-ENSDLEYLCCLLQEA-----LYGKSILILLDDVWEQ--DIVERFAKLY---DNDCKYLVT 306 (862)
Q Consensus 238 ~~~i~~~l~~lg~~~~~~~-~~~~~~~l~~~l~~~-----L~~kr~LLVLDDV~~~--~~~~~l~~~~---~~gsrILvT 306 (862)
... ...... .... .....+++. .+.+. ..+++-++|+|++... ...+.+...+ +..+.+|++
T Consensus 81 ~~g-----~~~dv~-el~aa~~~gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ila 153 (472)
T PRK14962 81 DEG-----TFMDVI-ELDAASNRGIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLA 153 (472)
T ss_pred hcC-----CCCccE-EEeCcccCCHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 000 000000 0000 011122221 12222 2345679999999754 3455555444 223444444
Q ss_pred ccc-hhhhh----hcccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCC-chHHHHHHhh
Q 002972 307 TRN-EAVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGH-HPLTVAVMGK 370 (862)
Q Consensus 307 TR~-~~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgG-LPLAI~~ig~ 370 (862)
|.+ ..+.. .+..... +++.++....+.+.+...+..- .++....|++.++| ++.|+..+-.
T Consensus 154 ttn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i---~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 154 TTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI---DREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred eCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 433 33322 1111112 7888887777777665433222 23567788887754 5666665544
No 50
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.54 E-value=0.0014 Score=74.89 Aligned_cols=192 Identities=13% Similarity=0.122 Sum_probs=97.6
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCC--ccCceEEEeeeeeeecccccCCCchHHH
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPER--FVGGAVELGFGQWCSRAACNGSKSDYQK 235 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~w~~~~~~~~s~~~~~~ 235 (862)
...+|.+.-.+.+...+..+.-...+.++|+.|+||||+|+.+++..... +.+..+.-.. + ..|....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~--~---~~c~~c~----- 85 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV--T---EPCGECE----- 85 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC--C---CCCCCCH-----
Confidence 45668777777888888765445668899999999999999999866421 1000000000 0 0111000
Q ss_pred HHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHh-----cCCCeEEEEEcCCCc--hHHHHHhhcc---CCCceEEE
Q 002972 236 RLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEAL-----YGKSILILLDDVWEQ--DIVERFAKLY---DNDCKYLV 305 (862)
Q Consensus 236 ~l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LLVLDDV~~~--~~~~~l~~~~---~~gsrILv 305 (862)
..+.+..- .......-........+++.+. .+.+ .+.+-++|+|++... ..++.+...+ ++.+.+|+
T Consensus 86 -~c~~~~~~-~~~n~~~~~~~~~~~id~Ir~l-~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il 162 (397)
T PRK14955 86 -SCRDFDAG-TSLNISEFDAASNNSVDDIRLL-RENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIF 162 (397)
T ss_pred -HHHHHhcC-CCCCeEeecccccCCHHHHHHH-HHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEE
Confidence 00111000 0000000000011123333332 2222 345668899999765 3566666544 34556554
Q ss_pred -Eccchhhhhh----cccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHH
Q 002972 306 -TTRNEAVYEI----TEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTV 365 (862)
Q Consensus 306 -TTR~~~va~~----~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI 365 (862)
|++...+... +..... ++++++....+...+...+.. -.++.+..|++.++|.+--+
T Consensus 163 ~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~---i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 163 ATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGIS---VDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred EeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 4444444321 111122 678888777666665433221 22467788999999876433
No 51
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.54 E-value=0.0018 Score=72.65 Aligned_cols=180 Identities=17% Similarity=0.175 Sum_probs=95.7
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCC----c-cCceEEEeeeeeeecccccCCCch
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPER----F-VGGAVELGFGQWCSRAACNGSKSD 232 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~----F-~~~~~~~~~~~w~~~~~~~~s~~~ 232 (862)
...+|.+...+.+...+..+.-.+.+.++|++|+||||+|+.++...... + +|+. |..
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~-------------c~~---- 76 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNE-------------CES---- 76 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC-------------CHH----
Confidence 34568788788888877765446788999999999999999998765311 1 1100 100
Q ss_pred HHHHHHHHHHHHHHHhccccc---c-CCCCCCHH---HHHHHHHHH-hcCCCeEEEEEcCCCc--hHHHHHhhcc---CC
Q 002972 233 YQKRLARKISKFLVQIGFWKK---I-KDENSDLE---YLCCLLQEA-LYGKSILILLDDVWEQ--DIVERFAKLY---DN 299 (862)
Q Consensus 233 ~~~~l~~~i~~~l~~lg~~~~---~-~~~~~~~~---~l~~~l~~~-L~~kr~LLVLDDV~~~--~~~~~l~~~~---~~ 299 (862)
- ..+. . +.... . .......+ ++...+... ..+++-++|+|++... ...+.+...+ ++
T Consensus 77 -c----~~~~---~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~ 146 (355)
T TIGR02397 77 -C----KEIN---S--GSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPE 146 (355)
T ss_pred -H----HHHh---c--CCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcc
Confidence 0 0000 0 00000 0 00001111 122211111 2245568999998755 4455555433 34
Q ss_pred CceEEEEccchh-hhh----hcccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHHH
Q 002972 300 DCKYLVTTRNEA-VYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAV 367 (862)
Q Consensus 300 gsrILvTTR~~~-va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~~ 367 (862)
.+.+|++|.+.. +.. .+..... ++++++....+...+...+...+ ++.+..+++.++|.|..+..
T Consensus 147 ~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~g~~~~a~~ 217 (355)
T TIGR02397 147 HVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE---DEALELIARAADGSLRDALS 217 (355)
T ss_pred ceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCChHHHHH
Confidence 566666664443 222 1111111 67777777777766654432222 36777888999998865543
No 52
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.52 E-value=0.0017 Score=67.89 Aligned_cols=157 Identities=14% Similarity=0.202 Sum_probs=78.0
Q ss_pred HHHHHHHhcCCC-ceEEEEEcCCCCCHHHHHHHHHhCCCCCcc-CceEEEeeeeeeecccccCCCchHHHHHHHHHHHHH
Q 002972 168 KFLRKLLEQEET-HQVILIVGLSGIGKSCLARQVASDPPERFV-GGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFL 245 (862)
Q Consensus 168 ~~l~~LL~~~~~-~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~-~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l 245 (862)
.....+.+..+. ...+.|+|..|+|||.|.+++++......+ ..++|++. ......+...+
T Consensus 21 ~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~-------------~~f~~~~~~~~---- 83 (219)
T PF00308_consen 21 AAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA-------------EEFIREFADAL---- 83 (219)
T ss_dssp HHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH-------------HHHHHHHHHHH----
T ss_pred HHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH-------------HHHHHHHHHHH----
Confidence 334444444322 446789999999999999999987653322 34555432 12222232222
Q ss_pred HHhccccccCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCch---HHH-HHhh----ccCCCceEEEEccchhh-hhhc
Q 002972 246 VQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQD---IVE-RFAK----LYDNDCKYLVTTRNEAV-YEIT 316 (862)
Q Consensus 246 ~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~---~~~-~l~~----~~~~gsrILvTTR~~~v-a~~~ 316 (862)
.. ... ..+++.+.+ -=+|++||+.... .|. .+.. ....|.+||+|++...- ....
T Consensus 84 ~~-----------~~~----~~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~ 147 (219)
T PF00308_consen 84 RD-----------GEI----EEFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGL 147 (219)
T ss_dssp HT-----------TSH----HHHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS
T ss_pred Hc-----------ccc----hhhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcccccc
Confidence 11 112 234444443 3488999997542 222 2222 22568899999966421 1111
Q ss_pred cc--------c---cc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCC
Q 002972 317 EA--------E---KV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGH 360 (862)
Q Consensus 317 ~~--------~---~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgG 360 (862)
.. . .+ +.+.++-.+++.+.+...+..-+ ++++.-|++.+.+
T Consensus 148 ~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~---~~v~~~l~~~~~~ 200 (219)
T PF00308_consen 148 LPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELP---EEVIEYLARRFRR 200 (219)
T ss_dssp -HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S----HHHHHHHHHHTTS
T ss_pred ChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCc---HHHHHHHHHhhcC
Confidence 11 0 11 45666666666666654433222 2344444444443
No 53
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.49 E-value=0.0027 Score=70.09 Aligned_cols=48 Identities=10% Similarity=0.260 Sum_probs=38.4
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
...+|.++..+.+..++..+.-..++.++|++|+||||+|+.+++...
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~ 68 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG 68 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 345577777778888887654467888899999999999999998753
No 54
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.49 E-value=0.0016 Score=75.37 Aligned_cols=186 Identities=15% Similarity=0.151 Sum_probs=94.7
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHH
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l 237 (862)
...+|.+.-.+.+...+..+.-...+.++|+.|+||||+|+.+++...-.+. .....|.... -
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~-----------~~~~pCg~C~------~ 75 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNG-----------PTSDPCGTCH------N 75 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCC-----------CCCCCccccH------H
Confidence 4566877777778777776544668999999999999999999874321100 0000011000 0
Q ss_pred HHHHHHHHHHhccccccCCCCCCHHHHHHHHHHH----hcCCCeEEEEEcCCCc--hHHHHHhhcc---CCCceEEEEc-
Q 002972 238 ARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEA----LYGKSILILLDDVWEQ--DIVERFAKLY---DNDCKYLVTT- 307 (862)
Q Consensus 238 ~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LLVLDDV~~~--~~~~~l~~~~---~~gsrILvTT- 307 (862)
-..|... .......-.......+++....+... +.+++-++|+|++... ...+.|...+ ++.+++|++|
T Consensus 76 C~~i~~~-~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatt 154 (491)
T PRK14964 76 CISIKNS-NHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATT 154 (491)
T ss_pred HHHHhcc-CCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 0001000 00000000000011223222222111 2346678999999755 3456665444 3456655544
Q ss_pred cchhhhhh----cccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHH
Q 002972 308 RNEAVYEI----TEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLT 364 (862)
Q Consensus 308 R~~~va~~----~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLA 364 (862)
....+... +..... +++.++....+.+.+...+... .++....|++.++|.+-.
T Consensus 155 e~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i---~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 155 EVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH---DEESLKLIAENSSGSMRN 213 (491)
T ss_pred ChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHH
Confidence 44444331 111122 6777777777777665443222 235667888888876643
No 55
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.48 E-value=0.0025 Score=64.82 Aligned_cols=81 Identities=15% Similarity=0.197 Sum_probs=48.1
Q ss_pred CCCeEEEEEcCCCc--hHHHHHhhcc---CCCceEEEEccch-hhhh----hcccccc-cCChhhHHHHHHHHhhhcccc
Q 002972 274 GKSILILLDDVWEQ--DIVERFAKLY---DNDCKYLVTTRNE-AVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLL 342 (862)
Q Consensus 274 ~kr~LLVLDDV~~~--~~~~~l~~~~---~~gsrILvTTR~~-~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~ 342 (862)
+.+-++|+||+... +..+.+...+ ++.+.+|++|++. .+.. .+....+ +++.++..+.+.+. +.
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~----gi- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ----GI- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc----CC-
Confidence 45678999998755 3455555443 3456666666543 2222 1111112 67777766655544 11
Q ss_pred cCcchHHHHHHHHhhhCCchH
Q 002972 343 AEEELPAAAESLLERCGHHPL 363 (862)
Q Consensus 343 ~~~~l~~~~~~Iv~~cgGLPL 363 (862)
.++.+..|++.++|.|.
T Consensus 170 ----~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 ----SEEAAELLLALAGGSPG 186 (188)
T ss_pred ----CHHHHHHHHHHcCCCcc
Confidence 13678899999999885
No 56
>PRK05642 DNA replication initiation factor; Validated
Probab=97.47 E-value=0.0015 Score=69.02 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
...+.|+|..|+|||.|++.+++...
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~ 70 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE 70 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999987543
No 57
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.44 E-value=0.0024 Score=76.10 Aligned_cols=188 Identities=18% Similarity=0.227 Sum_probs=99.4
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHH
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l 237 (862)
...+|-+.-.+.+..++..+.-...+.++|..|+||||+|+.+++.....-+++. .-.+...|... . -
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~------~~~~~~pCg~C--~----~ 83 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQ------GGITATPCGVC--Q----A 83 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccc------cCCCCCCCCcc--H----H
Confidence 4556877778888888887655678899999999999999999876431000000 00000111100 0 0
Q ss_pred HHHHHHHHHHhccccc---cC-CCCCCHHHHHHHHHHH----hcCCCeEEEEEcCCCc--hHHHHHhhcc---CCCceEE
Q 002972 238 ARKISKFLVQIGFWKK---IK-DENSDLEYLCCLLQEA----LYGKSILILLDDVWEQ--DIVERFAKLY---DNDCKYL 304 (862)
Q Consensus 238 ~~~i~~~l~~lg~~~~---~~-~~~~~~~~l~~~l~~~----L~~kr~LLVLDDV~~~--~~~~~l~~~~---~~gsrIL 304 (862)
.+.|. . |.... .. .....+++..+.+... ..++.-++|||+|... ..++.+...+ +..+++|
T Consensus 84 C~~i~----~-g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fI 158 (618)
T PRK14951 84 CRDID----S-GRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFV 158 (618)
T ss_pred HHHHH----c-CCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEE
Confidence 01110 0 00000 00 0111333333322221 1244568999999865 4566666544 3455665
Q ss_pred EEc-cchhhh----hhcccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHH
Q 002972 305 VTT-RNEAVY----EITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTV 365 (862)
Q Consensus 305 vTT-R~~~va----~~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI 365 (862)
++| ....+. ..+....+ +++.++..+.+.+.+...+... .++....|++.++|.+--+
T Consensus 159 L~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i---e~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 159 LATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA---EPQALRLLARAARGSMRDA 222 (618)
T ss_pred EEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 554 433332 22222222 7888888777777665443322 2356778888888876443
No 58
>PTZ00202 tuzin; Provisional
Probab=97.44 E-value=0.0018 Score=72.56 Aligned_cols=51 Identities=20% Similarity=0.358 Sum_probs=41.5
Q ss_pred ccccCCCcCccHHHHHHHHHhcC--CCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 155 VKAEQGYPISSKSKFLRKLLEQE--ETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 155 ~~~~~~~g~~~~~~~l~~LL~~~--~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+.+..+||+.++..+..+|.+. ..++++.|+|++|+|||||++.+.....
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~ 311 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG 311 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 33456669999999999999752 2367999999999999999999997664
No 59
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=0.0035 Score=70.90 Aligned_cols=48 Identities=25% Similarity=0.302 Sum_probs=38.7
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
...+|.+.-.+.+...+..+.-.+.+.++|++|+||||+|..+++...
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345677877778888887654467899999999999999999988654
No 60
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.43 E-value=0.0017 Score=61.10 Aligned_cols=37 Identities=41% Similarity=0.528 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeee
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFG 218 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~ 218 (862)
..+.|+|++|+||||+|+.+++...... ..+++++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~ 39 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGE 39 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCE
Confidence 5789999999999999999999887543 235555543
No 61
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=0.0032 Score=73.84 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=39.4
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
...+|-+.-.+.+...+..+.-...+.++|+.|+||||+|+.+++..-
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence 456688888888888887765566789999999999999999998653
No 62
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.43 E-value=0.0026 Score=71.13 Aligned_cols=190 Identities=15% Similarity=0.157 Sum_probs=101.2
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCC----ccCceEEEeeeeeeecccccCCCchH
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPER----FVGGAVELGFGQWCSRAACNGSKSDY 233 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~----F~~~~~~~~~~~w~~~~~~~~s~~~~ 233 (862)
...+|-+.-...+...+..+.-+..+.|+|+.|+||||+|..+++..-.. +.... . ...|. ...
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~----~-----~~~~~--~c~- 90 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET----L-----ADPDP--ASP- 90 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc----c-----CCCCC--CCH-
Confidence 45668777778888888776557789999999999999999999875421 11000 0 00111 000
Q ss_pred HHHHHHHHHHH----HHHhccccccC----CCCCCHHHHHHHHHHHhc-----CCCeEEEEEcCCCc--hHHHHHhhcc-
Q 002972 234 QKRLARKISKF----LVQIGFWKKIK----DENSDLEYLCCLLQEALY-----GKSILILLDDVWEQ--DIVERFAKLY- 297 (862)
Q Consensus 234 ~~~l~~~i~~~----l~~lg~~~~~~----~~~~~~~~l~~~l~~~L~-----~kr~LLVLDDV~~~--~~~~~l~~~~- 297 (862)
..+.+... +..+....... ...-.+++.. .+.+++. +++-++|+|+++.. ...+.+...+
T Consensus 91 ---~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LE 166 (351)
T PRK09112 91 ---VWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLE 166 (351)
T ss_pred ---HHHHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHh
Confidence 11111100 00000000000 0111344432 3444443 46779999999865 3345554333
Q ss_pred --CCCce-EEEEccchhhhh----hcccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHHHH
Q 002972 298 --DNDCK-YLVTTRNEAVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVM 368 (862)
Q Consensus 298 --~~gsr-ILvTTR~~~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~~i 368 (862)
+.++. |++|++...+.. .+....+ +++.++....+.+.... .. -.++....+++.++|.|.....+
T Consensus 167 Epp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~----~~-~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 167 EPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS----QG-SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred cCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc----cC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 33444 455544433322 2221222 78999988887763211 11 11355778999999999865543
No 63
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.41 E-value=0.0016 Score=76.81 Aligned_cols=189 Identities=14% Similarity=0.149 Sum_probs=95.6
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHH
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l 237 (862)
...+|.+.-.+.+...+..+.-.+.+.++|+.|+||||+|+.+++.....- |.....|... ..
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~-----------~~~~~~Cg~C--~s---- 78 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN-----------PKDGDCCNSC--SV---- 78 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC-----------CCCCCCCccc--HH----
Confidence 355687777777777776654567889999999999999999998753110 1111112110 00
Q ss_pred HHHHHHHHHHhccccccC-CCCCCHHHHHHHH---HHH-hcCCCeEEEEEcCCCc--hHHHHHhhcc---CCCceEEE-E
Q 002972 238 ARKISKFLVQIGFWKKIK-DENSDLEYLCCLL---QEA-LYGKSILILLDDVWEQ--DIVERFAKLY---DNDCKYLV-T 306 (862)
Q Consensus 238 ~~~i~~~l~~lg~~~~~~-~~~~~~~~l~~~l---~~~-L~~kr~LLVLDDV~~~--~~~~~l~~~~---~~gsrILv-T 306 (862)
.+.+... ...... ... .....++++...+ ... ..+++-++|+|++... ..++.|...+ +..+.+|+ |
T Consensus 79 Cr~i~~~-~h~Dii-eIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 79 CESINTN-QSVDIV-ELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred HHHHHcC-CCCceE-EeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 0111000 000000 000 0011222222211 111 1234457999999764 4566666544 33455554 4
Q ss_pred ccchhhhh----hcccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchH-HHHHH
Q 002972 307 TRNEAVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPL-TVAVM 368 (862)
Q Consensus 307 TR~~~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPL-AI~~i 368 (862)
+....+.. .+..... +++.++....+...+...+...+ ++.+..+++.++|.+- |+..+
T Consensus 157 t~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is---~eal~~La~lS~GdlR~AlnlL 221 (605)
T PRK05896 157 TEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE---DNAIDKIADLADGSLRDGLSIL 221 (605)
T ss_pred CChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHH
Confidence 44433332 1222222 67888877777766654332112 3567788888888553 44333
No 64
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.39 E-value=0.002 Score=74.39 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=26.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCcc-CceEE
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERFV-GGAVE 214 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~-~~~~~ 214 (862)
..-+.|+|.+|+|||+|++++++.....++ ..++|
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~y 165 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMY 165 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEE
Confidence 445899999999999999999998654432 34444
No 65
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.37 E-value=0.0036 Score=73.92 Aligned_cols=181 Identities=18% Similarity=0.203 Sum_probs=94.0
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHH
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l 237 (862)
...+|.+.-.+.+...+..+.-.+.+.++|+.|+||||+|+.+++....... .....|.... .
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~-----------~~~~pcg~C~--~---- 78 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETG-----------VTATPCGVCS--A---- 78 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCC-----------CCCCCCCCCH--H----
Confidence 3456877777788888776544667889999999999999999887632110 0000111000 0
Q ss_pred HHHHHHHHHHhcccc---ccC-CCCCCHHHHHHHHHHH----hcCCCeEEEEEcCCCch--HHHHHhhcc---CCCceEE
Q 002972 238 ARKISKFLVQIGFWK---KIK-DENSDLEYLCCLLQEA----LYGKSILILLDDVWEQD--IVERFAKLY---DNDCKYL 304 (862)
Q Consensus 238 ~~~i~~~l~~lg~~~---~~~-~~~~~~~~l~~~l~~~----L~~kr~LLVLDDV~~~~--~~~~l~~~~---~~gsrIL 304 (862)
...+. . |... ... .....++++...+... ..+++-++|+|++.... ..+.+...+ +..+.+|
T Consensus 79 C~~i~----~-~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fI 153 (527)
T PRK14969 79 CLEID----S-GRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFI 153 (527)
T ss_pred HHHHh----c-CCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEE
Confidence 00000 0 0000 000 0011233322222211 13566799999998653 455555444 3455555
Q ss_pred EEc-cchhhhh----hcccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchH
Q 002972 305 VTT-RNEAVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPL 363 (862)
Q Consensus 305 vTT-R~~~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPL 363 (862)
++| ....+.. .+....+ +++.++....+.+.+...+.. -.++....|++.++|.+-
T Consensus 154 L~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~---~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 154 LATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP---FDATALQLLARAAAGSMR 215 (527)
T ss_pred EEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHH
Confidence 554 3333321 1211222 677777776666665433321 123556778888888664
No 66
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.35 E-value=0.063 Score=64.70 Aligned_cols=105 Identities=15% Similarity=0.076 Sum_probs=61.7
Q ss_pred HHHHHHHHhcCCCeEEEEEcCCCc--hHHHHHhhccCC---CceEEE--Eccchhhh-----hhcccccc-cCChhhHHH
Q 002972 264 LCCLLQEALYGKSILILLDDVWEQ--DIVERFAKLYDN---DCKYLV--TTRNEAVY-----EITEAEKV-ELSKDDIME 330 (862)
Q Consensus 264 l~~~l~~~L~~kr~LLVLDDV~~~--~~~~~l~~~~~~---gsrILv--TTR~~~va-----~~~~~~~~-~L~~~ea~~ 330 (862)
.+..+.+.++++++.++-|+.|.. ..|+.+...+.. ...+++ ||++.... ..+....+ +++.+|.+.
T Consensus 281 ~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~ 360 (615)
T TIGR02903 281 LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHH
Confidence 467788888888888887766644 456666554433 223444 56654321 11211122 789999999
Q ss_pred HHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHHHHhhh
Q 002972 331 ISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMGKA 371 (862)
Q Consensus 331 Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~~ig~~ 371 (862)
++++.+.......+ +++.+.|.+.+..-+-|+..++..
T Consensus 361 Il~~~a~~~~v~ls---~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 361 IVLNAAEKINVHLA---AGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHHHHHHcCCCCC---HHHHHHHHHCCCcHHHHHHHHHHH
Confidence 99887664322111 355566666665556666655544
No 67
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.33 E-value=0.0033 Score=70.72 Aligned_cols=189 Identities=16% Similarity=0.104 Sum_probs=99.8
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCC--ccCceEEEeeeeeeecccccCCCchHHH
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPER--FVGGAVELGFGQWCSRAACNGSKSDYQK 235 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~w~~~~~~~~s~~~~~~ 235 (862)
...+|.+.-.+.+...+..+.-...+.++|+.|+||+|+|..+++..-.+ ..+..+-.. -.....|. .-.
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~---~~~l~~~~--~c~--- 90 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPP---PTSLAIDP--DHP--- 90 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccc---cccccCCC--CCh---
Confidence 45668777777788877776556789999999999999999998765311 110000000 00000011 000
Q ss_pred HHHHHHHHHHHHhccccc---------cCC----CCCCHHHHHHHHHHHhc-----CCCeEEEEEcCCCc--hHHHHHhh
Q 002972 236 RLARKISKFLVQIGFWKK---------IKD----ENSDLEYLCCLLQEALY-----GKSILILLDDVWEQ--DIVERFAK 295 (862)
Q Consensus 236 ~l~~~i~~~l~~lg~~~~---------~~~----~~~~~~~l~~~l~~~L~-----~kr~LLVLDDV~~~--~~~~~l~~ 295 (862)
..+.+. . +.+.+ ... ..-.+++ ++.+.+.+. +++-++|+||++.. ...+.|..
T Consensus 91 -~c~~i~----~-~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK 163 (365)
T PRK07471 91 -VARRIA----A-GAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLK 163 (365)
T ss_pred -HHHHHH----c-cCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHH
Confidence 011110 0 10000 000 1113344 333334433 45679999999755 44555554
Q ss_pred cc---CCCceEEEEccchh-hhhh----cccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHH
Q 002972 296 LY---DNDCKYLVTTRNEA-VYEI----TEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVA 366 (862)
Q Consensus 296 ~~---~~gsrILvTTR~~~-va~~----~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~ 366 (862)
.+ +.++.+|++|.+.+ +... +..-.+ +++.++..+++.+... ..+ .+....++..++|.|+...
T Consensus 164 ~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~-----~~~--~~~~~~l~~~s~Gsp~~Al 236 (365)
T PRK07471 164 VLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGP-----DLP--DDPRAALAALAEGSVGRAL 236 (365)
T ss_pred HHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcc-----cCC--HHHHHHHHHHcCCCHHHHH
Confidence 33 34666777776653 3221 111122 7899998887765431 111 1223678999999998655
Q ss_pred HH
Q 002972 367 VM 368 (862)
Q Consensus 367 ~i 368 (862)
.+
T Consensus 237 ~l 238 (365)
T PRK07471 237 RL 238 (365)
T ss_pred HH
Confidence 44
No 68
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.30 E-value=0.0062 Score=72.64 Aligned_cols=193 Identities=12% Similarity=0.093 Sum_probs=99.9
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHH
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l 237 (862)
...+|.+...+.+...+..+.-...+.++|+.|+||||+|+.+++.......+.. - -.+...|.... .
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~----~--~~~~~~cg~c~--~---- 91 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGD----G--GPTIDLCGVGE--H---- 91 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCcccc----C--CCccccCcccH--H----
Confidence 4566888888888888877655678899999999999999999987642221100 0 00000111000 0
Q ss_pred HHHHHHHHHHhccccccCCCCCCHHHHHHHHHHH----hcCCCeEEEEEcCCCch--HHHHHhhcc---CCCceEEE-Ec
Q 002972 238 ARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEA----LYGKSILILLDDVWEQD--IVERFAKLY---DNDCKYLV-TT 307 (862)
Q Consensus 238 ~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LLVLDDV~~~~--~~~~l~~~~---~~gsrILv-TT 307 (862)
.+.|..- ...+...-.......++++.+.+... ..+++-++|+|++.... ..+.|...+ ++++.+|+ ||
T Consensus 92 C~~i~~g-~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tt 170 (598)
T PRK09111 92 CQAIMEG-RHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATT 170 (598)
T ss_pred HHHHhcC-CCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 0111100 00000000000111233332222111 23455689999997653 455555443 44566554 54
Q ss_pred cchhhhh----hcccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHH
Q 002972 308 RNEAVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVA 366 (862)
Q Consensus 308 R~~~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~ 366 (862)
....+.. .+....+ +++.++....+.+.+...+... .++....|++.++|.+.-+.
T Consensus 171 e~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i---~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 171 EIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV---EDEALALIARAAEGSVRDGL 231 (598)
T ss_pred ChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 4443332 2211122 6777777777777665443222 23667788899988876443
No 69
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.28 E-value=0.0027 Score=78.19 Aligned_cols=47 Identities=19% Similarity=0.221 Sum_probs=37.1
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
++.+|++...+.+...|..... .-+.++|.+|+|||++|+.+++...
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~-~n~lL~G~pG~GKT~l~~~la~~~~ 228 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKK-NNPLLVGEPGVGKTAIAEGLALRIA 228 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCC-CceEEECCCCCCHHHHHHHHHHHHH
Confidence 4667998888888787766433 3456999999999999999998763
No 70
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.27 E-value=0.0051 Score=64.52 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 166 KSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 166 ~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
....+..+.........+.|+|.+|+|||+||+.+++..
T Consensus 28 ~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 28 LVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred HHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 344455554433345678999999999999999999864
No 71
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.27 E-value=0.0074 Score=71.60 Aligned_cols=189 Identities=17% Similarity=0.239 Sum_probs=102.2
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHH
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l 237 (862)
...+|.+...+.+...+..+.-...+.++|+.|+||||+|+.+++..-.... .....|... ..
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~-----------~~~~pCg~C--~s---- 78 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETA-----------PTGEPCNTC--EQ---- 78 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCC-----------CCCCCCccc--HH----
Confidence 3456777777888888876544678889999999999999999987642100 000011100 00
Q ss_pred HHHHHHHHHHhccccc---cC-CCCCCHHHHHHHHHHH-----hcCCCeEEEEEcCCCc--hHHHHHhhcc---CCCceE
Q 002972 238 ARKISKFLVQIGFWKK---IK-DENSDLEYLCCLLQEA-----LYGKSILILLDDVWEQ--DIVERFAKLY---DNDCKY 303 (862)
Q Consensus 238 ~~~i~~~l~~lg~~~~---~~-~~~~~~~~l~~~l~~~-----L~~kr~LLVLDDV~~~--~~~~~l~~~~---~~gsrI 303 (862)
.+.+.. |.... .. .....++++.. +.+. ..+++-++|+|++... ...+.|...+ +....+
T Consensus 79 C~~i~~-----g~hpDv~eId~a~~~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~if 152 (624)
T PRK14959 79 CRKVTQ-----GMHVDVVEIDGASNRGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTF 152 (624)
T ss_pred HHHHhc-----CCCCceEEEecccccCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEE
Confidence 011100 00000 00 00112222221 2222 2356679999999765 4556666544 234555
Q ss_pred EEEccc-hhhhh----hcccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCch-HHHHHHhhhh
Q 002972 304 LVTTRN-EAVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHP-LTVAVMGKAL 372 (862)
Q Consensus 304 LvTTR~-~~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLP-LAI~~ig~~L 372 (862)
|++|.+ ..+.. .+....+ +++.++....+...+...+... .++.+..|++.++|.+ .|+..+...+
T Consensus 153 ILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~i---d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 153 VLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDY---DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred EEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 555544 43332 1222222 7888888877777665433211 2367788899999854 6777665444
No 72
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.24 E-value=0.00094 Score=63.08 Aligned_cols=24 Identities=42% Similarity=0.487 Sum_probs=21.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 183 ILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 183 I~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
|.|+|++|+|||++|+.+++....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~ 24 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF 24 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS
T ss_pred CEEECcCCCCeeHHHHHHHhhccc
Confidence 579999999999999999998753
No 73
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.24 E-value=0.0065 Score=71.11 Aligned_cols=184 Identities=17% Similarity=0.172 Sum_probs=99.3
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCC----C-ccCceEEEeeeeeeecccccCCCch
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPE----R-FVGGAVELGFGQWCSRAACNGSKSD 232 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~----~-F~~~~~~~~~~~w~~~~~~~~s~~~ 232 (862)
...+|-+.-.+.+...+..+.-.+.+.++|+.|+||||+|+.+++..-. . .+|+. |.
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~-------------C~----- 75 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDT-------------CI----- 75 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcc-------------cH-----
Confidence 4566777777788888876544667899999999999999999876521 1 11111 10
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHH----hcCCCeEEEEEcCCCc--hHHHHHhhcc---CCCceE
Q 002972 233 YQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEA----LYGKSILILLDDVWEQ--DIVERFAKLY---DNDCKY 303 (862)
Q Consensus 233 ~~~~l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LLVLDDV~~~--~~~~~l~~~~---~~gsrI 303 (862)
.- +.+.... ...............+++.+.+... ..+++-++|+|++... +..+.|+..+ ++.+++
T Consensus 76 ~C----~~~~~~~-h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~F 150 (535)
T PRK08451 76 QC----QSALENR-HIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKF 150 (535)
T ss_pred HH----HHHhhcC-CCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEE
Confidence 00 0000000 0000000000011233333333221 1245668999999765 3455555433 456776
Q ss_pred EEEccch-hhh----hhcccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHHH
Q 002972 304 LVTTRNE-AVY----EITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAV 367 (862)
Q Consensus 304 LvTTR~~-~va----~~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~~ 367 (862)
|++|.+. .+. ..+..... +++.++....+.+.+...+... .++.+..|++.++|.+--+..
T Consensus 151 IL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i---~~~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 151 ILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY---EPEALEILARSGNGSLRDTLT 217 (535)
T ss_pred EEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHH
Confidence 6666553 222 12221222 7888888777777665443222 246778899999998854433
No 74
>PRK06620 hypothetical protein; Validated
Probab=97.22 E-value=0.0038 Score=64.96 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
+.+-|+|++|+|||+|++.+++..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 578999999999999999988765
No 75
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.21 E-value=0.0004 Score=73.70 Aligned_cols=30 Identities=27% Similarity=0.201 Sum_probs=25.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCC-Ccc
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPE-RFV 209 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~-~F~ 209 (862)
...++|+|++|+|||||++.++++... +|+
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fd 46 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPE 46 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCC
Confidence 458899999999999999999998874 454
No 76
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.20 E-value=0.0076 Score=69.80 Aligned_cols=48 Identities=23% Similarity=0.284 Sum_probs=38.4
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
...+|.+...+.+...+..+.-...+.++|+.|+||||+|+.+++..-
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~ 64 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALN 64 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 456687877788888887654467788999999999999999987653
No 77
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.19 E-value=0.007 Score=68.92 Aligned_cols=50 Identities=26% Similarity=0.335 Sum_probs=37.4
Q ss_pred cCCCcCccHHHHHHHHHhc------------CCCceEEEEEcCCCCCHHHHHHHHHhCCCCC
Q 002972 158 EQGYPISSKSKFLRKLLEQ------------EETHQVILIVGLSGIGKSCLARQVASDPPER 207 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~------------~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~ 207 (862)
....|+++..+.+...+.. -..++-|.++|++|+|||++|+++++.....
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~ 192 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT 192 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC
Confidence 3455888888877776532 1235679999999999999999999876543
No 78
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.19 E-value=0.0064 Score=70.43 Aligned_cols=159 Identities=14% Similarity=0.179 Sum_probs=87.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCc-cCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHhccccccCCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERF-VGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDEN 258 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~lg~~~~~~~~~ 258 (862)
..-+.|+|..|+|||+|++++++...... ...++++ +.......+...+.. .
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv-------------~~~~f~~~~~~~l~~-----------~--- 193 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM-------------SGDEFARKAVDILQK-----------T--- 193 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE-------------EHHHHHHHHHHHHHH-----------h---
Confidence 34688999999999999999998554221 1223332 222333333333311 0
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEEEcCCCch----HHHHHhhcc----CCCceEEEEccchh-hhh--------hccccc-
Q 002972 259 SDLEYLCCLLQEALYGKSILILLDDVWEQD----IVERFAKLY----DNDCKYLVTTRNEA-VYE--------ITEAEK- 320 (862)
Q Consensus 259 ~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~----~~~~l~~~~----~~gsrILvTTR~~~-va~--------~~~~~~- 320 (862)
......+++.+. ..-+||+||+.... ..+.|...+ ..|..||+|+.... ... .+....
T Consensus 194 ---~~~~~~~~~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~ 269 (450)
T PRK14087 194 ---HKEIEQFKNEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLS 269 (450)
T ss_pred ---hhHHHHHHHHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCce
Confidence 011223333333 34588999996431 223333322 45667888876542 111 111111
Q ss_pred --c-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHHHHhh
Q 002972 321 --V-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMGK 370 (862)
Q Consensus 321 --~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~~ig~ 370 (862)
+ +++.++-..++.+.+...+.. ..--+++..-|++.++|.|-.+..+..
T Consensus 270 ~~L~~pd~e~r~~iL~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 270 IAIQKLDNKTATAIIKKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred eccCCcCHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 1 678888888887777543321 112246778888888888876655443
No 79
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.16 E-value=0.0079 Score=74.20 Aligned_cols=181 Identities=13% Similarity=0.099 Sum_probs=95.5
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCC-----ccCceEEEeeeeeeecccccCCCch
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPER-----FVGGAVELGFGQWCSRAACNGSKSD 232 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~-----F~~~~~~~~~~~w~~~~~~~~s~~~ 232 (862)
...+|.+...+.|...+..+.-.+.+.++|..|+||||+|+.+++.+... -.|+. |.+
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~-------------C~s---- 77 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGE-------------CDS---- 77 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcc-------------cHH----
Confidence 45567777777788888765446678999999999999999998876411 11211 110
Q ss_pred HHHHHHHHHHHHH-HHhccccccCCCCCCHHHHHHHHHH----HhcCCCeEEEEEcCCCc--hHHHHHhhcc---CCCce
Q 002972 233 YQKRLARKISKFL-VQIGFWKKIKDENSDLEYLCCLLQE----ALYGKSILILLDDVWEQ--DIVERFAKLY---DNDCK 302 (862)
Q Consensus 233 ~~~~l~~~i~~~l-~~lg~~~~~~~~~~~~~~l~~~l~~----~L~~kr~LLVLDDV~~~--~~~~~l~~~~---~~gsr 302 (862)
.+.+..-- .......-.......++++...... -..++.-++|||++... ...+.|+..+ +..+.
T Consensus 78 -----C~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~ 152 (824)
T PRK07764 78 -----CVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLK 152 (824)
T ss_pred -----HHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeE
Confidence 00000000 0000000000011123333221111 12356668999999865 4456665544 34555
Q ss_pred EE-EEccchhhhhh----cccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchH
Q 002972 303 YL-VTTRNEAVYEI----TEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPL 363 (862)
Q Consensus 303 IL-vTTR~~~va~~----~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPL 363 (862)
+| +||....+... +....+ +++.++..+.+.+.+...+.. -..+....|++.++|.+.
T Consensus 153 fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~---id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 153 FIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP---VEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred EEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHH
Confidence 55 44444444432 222222 677777777666665433321 123556778888888774
No 80
>PRK08116 hypothetical protein; Validated
Probab=97.16 E-value=0.0022 Score=69.03 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPPER 207 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~~~ 207 (862)
.-+.++|.+|+|||.||.++++....+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~ 141 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK 141 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 458899999999999999999986543
No 81
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.15 E-value=0.0053 Score=71.37 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=24.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCc
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERF 208 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F 208 (862)
...+.|+|.+|+|||+|++++++....++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~ 176 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKN 176 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC
Confidence 45689999999999999999999876554
No 82
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.15 E-value=0.0068 Score=72.44 Aligned_cols=190 Identities=13% Similarity=0.155 Sum_probs=96.3
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCC--ccCceEEEeeeeeeecccccCCCchHHH
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPER--FVGGAVELGFGQWCSRAACNGSKSDYQK 235 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~w~~~~~~~~s~~~~~~ 235 (862)
...+|.+.-.+.+...+..+.-...+.++|+.|+||||+|+.+++..-.. +.+.. |.. -....|....
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~-~~~----~~~~~Cg~C~----- 85 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPV-YLQ----EVTEPCGECE----- 85 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccc-ccc----ccCCCCccCH-----
Confidence 45668777777788877765446678999999999999999999865321 10000 000 0001121100
Q ss_pred HHHHHHHHHHHHhccccccCC-CCCCHHHHHHHHHHH----hcCCCeEEEEEcCCCch--HHHHHhhcc---CCCceEE-
Q 002972 236 RLARKISKFLVQIGFWKKIKD-ENSDLEYLCCLLQEA----LYGKSILILLDDVWEQD--IVERFAKLY---DNDCKYL- 304 (862)
Q Consensus 236 ~l~~~i~~~l~~lg~~~~~~~-~~~~~~~l~~~l~~~----L~~kr~LLVLDDV~~~~--~~~~l~~~~---~~gsrIL- 304 (862)
..+.+.. ....... .... ....++++...+... ..+.+-++|+|+++... ..+.|...+ ++.+.+|
T Consensus 86 -sC~~~~~-g~~~n~~-~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL 162 (620)
T PRK14954 86 -SCRDFDA-GTSLNIS-EFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIF 162 (620)
T ss_pred -HHHHHhc-cCCCCeE-EecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEE
Confidence 0011100 0000000 0000 111234433332222 23456689999997653 456666544 2344544
Q ss_pred EEccchhhhhhcc--cccc---cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchH
Q 002972 305 VTTRNEAVYEITE--AEKV---ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPL 363 (862)
Q Consensus 305 vTTR~~~va~~~~--~~~~---~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPL 363 (862)
+|++...+..... ...+ +++.++....+.+.+...+... .++.+..|++.++|..-
T Consensus 163 ~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I---~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 163 ATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI---DADALQLIARKAQGSMR 223 (620)
T ss_pred EeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhCCCHH
Confidence 5554444433211 1112 6788777666666554333211 24677889999998554
No 83
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.15 E-value=0.012 Score=70.02 Aligned_cols=181 Identities=14% Similarity=0.096 Sum_probs=94.6
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCC-----ccCceEEEeeeeeeecccccCCCch
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPER-----FVGGAVELGFGQWCSRAACNGSKSD 232 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~-----F~~~~~~~~~~~w~~~~~~~~s~~~ 232 (862)
...+|.+.-.+.+...+..+.-.+.+.++|+.|+||||+|+.+++..... -+|+. |..
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~-------------C~~---- 75 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGV-------------CES---- 75 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccc-------------cHH----
Confidence 45568777788888888765446678999999999999999999865421 11111 100
Q ss_pred HHHHHHHHHHHHH-HHhccccccCCCCCCHHHH---HHHHHHH-hcCCCeEEEEEcCCCc--hHHHHHhhcc---CCCce
Q 002972 233 YQKRLARKISKFL-VQIGFWKKIKDENSDLEYL---CCLLQEA-LYGKSILILLDDVWEQ--DIVERFAKLY---DNDCK 302 (862)
Q Consensus 233 ~~~~l~~~i~~~l-~~lg~~~~~~~~~~~~~~l---~~~l~~~-L~~kr~LLVLDDV~~~--~~~~~l~~~~---~~gsr 302 (862)
.+.+...- .......-.......+++. .+.+... ..+++-++|+|++... ...+.|+..+ +..+.
T Consensus 76 -----C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~ 150 (584)
T PRK14952 76 -----CVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLI 150 (584)
T ss_pred -----HHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeE
Confidence 00000000 0000000000001123322 2222111 2345668999998754 4556655444 34555
Q ss_pred EE-EEccchhhhhh----cccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchH
Q 002972 303 YL-VTTRNEAVYEI----TEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPL 363 (862)
Q Consensus 303 IL-vTTR~~~va~~----~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPL 363 (862)
+| +||....+... +....+ +++.++..+.+.+.+...+... ..+....|++.++|-+-
T Consensus 151 fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i---~~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 151 FIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV---DDAVYPLVIRAGGGSPR 214 (584)
T ss_pred EEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHH
Confidence 44 55554444332 221222 6788887777666655433211 13556778888888664
No 84
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.14 E-value=0.0032 Score=66.97 Aligned_cols=170 Identities=15% Similarity=0.142 Sum_probs=94.1
Q ss_pred CCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC--CCccCceEEEeeeeeeecccccCCCchHHHHH
Q 002972 160 GYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP--ERFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (862)
Q Consensus 160 ~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~--~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l 237 (862)
..|.+.....+..-+.. ........+|++|.|||+-|+.+++..- +-|+|++.-.+.. .+.-.. +
T Consensus 38 ~~gQe~vV~~L~~a~~~-~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS-----------derGis-v 104 (346)
T KOG0989|consen 38 LAGQEHVVQVLKNALLR-RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS-----------DERGIS-V 104 (346)
T ss_pred hcchHHHHHHHHHHHhh-cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc-----------cccccc-c
Confidence 33555555556555555 4678899999999999999999988764 4477776533321 111000 1
Q ss_pred HHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhc--CCC-eEEEEEcCCCc--hHHHHHhhcc---CCCce-EEEEcc
Q 002972 238 ARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALY--GKS-ILILLDDVWEQ--DIVERFAKLY---DNDCK-YLVTTR 308 (862)
Q Consensus 238 ~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~L~--~kr-~LLVLDDV~~~--~~~~~l~~~~---~~gsr-ILvTTR 308 (862)
.+. ...+...+......... -++ -.+|||+++.. +.|..+.... +..++ |+||+-
T Consensus 105 vr~----------------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcny 168 (346)
T KOG0989|consen 105 VRE----------------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNY 168 (346)
T ss_pred hhh----------------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCC
Confidence 000 00011111111100000 122 47889999876 6788887544 34455 445544
Q ss_pred chhhhh----hcccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCc
Q 002972 309 NEAVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHH 361 (862)
Q Consensus 309 ~~~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGL 361 (862)
-..+.. .+.-... +|.+++...-++.++...+...+ .+..+.|++.++|-
T Consensus 169 lsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d---~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 169 LSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID---DDALKLIAKISDGD 223 (346)
T ss_pred hhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCc
Confidence 333222 2222233 78888877777777765544332 35677888888773
No 85
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.13 E-value=0.025 Score=60.98 Aligned_cols=188 Identities=16% Similarity=0.107 Sum_probs=100.6
Q ss_pred cHHHHHHHHHhcCCC--ceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHH
Q 002972 165 SKSKFLRKLLEQEET--HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKIS 242 (862)
Q Consensus 165 ~~~~~l~~LL~~~~~--~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~ 242 (862)
.-.+.+..|+..... ..-+.|+|.+|+|||++++++.+.+...++...-.+-+ ++-.. ........+...|+
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PV--v~vq~----P~~p~~~~~Y~~IL 117 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPV--VYVQM----PPEPDERRFYSAIL 117 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccE--EEEec----CCCCChHHHHHHHH
Confidence 566777888876543 56799999999999999999998776444332211111 11000 23344556666665
Q ss_pred HHHHHhccccccCCCCCCHHHHHHHHHHHhcC-CCeEEEEEcCCCc-----h----HHHHHhhccCC---CceEEEEccc
Q 002972 243 KFLVQIGFWKKIKDENSDLEYLCCLLQEALYG-KSILILLDDVWEQ-----D----IVERFAKLYDN---DCKYLVTTRN 309 (862)
Q Consensus 243 ~~l~~lg~~~~~~~~~~~~~~l~~~l~~~L~~-kr~LLVLDDV~~~-----~----~~~~l~~~~~~---gsrILvTTR~ 309 (862)
..+ |. ..............+.+.++. +--+||+|.+.+. . ..+.+. .+++ =+-|.+-|++
T Consensus 118 ~~l---ga---P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK-~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 118 EAL---GA---PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALK-FLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHh---Cc---ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHH-HHhhccCCCeEEeccHH
Confidence 444 32 222333555555555566654 4458999999764 1 122222 2333 2346666665
Q ss_pred hhhh--------hhcccccc-cCC-hhhHHHHHHHHhhhcccc--cCcchHHHHHHHHhhhCCchHHH
Q 002972 310 EAVY--------EITEAEKV-ELS-KDDIMEISKSILLYHSLL--AEEELPAAAESLLERCGHHPLTV 365 (862)
Q Consensus 310 ~~va--------~~~~~~~~-~L~-~~ea~~Lf~~~~~~~~~~--~~~~l~~~~~~Iv~~cgGLPLAI 365 (862)
..-+ ..+....+ +.. .+|...|+......-... ..-..++.+..|...++|+.=-+
T Consensus 191 A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 191 AYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHH
Confidence 4332 22222222 122 334445543222111111 11234678999999999987443
No 86
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.13 E-value=0.0028 Score=78.86 Aligned_cols=47 Identities=13% Similarity=0.226 Sum_probs=37.0
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+.+|++...+.+...|..... .-+.++|.+|+||||+|+.++++..
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~-~n~lLvG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQ-NNPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCc-CceeEECCCCCCHHHHHHHHHHHHh
Confidence 5667998888887777766433 3456999999999999999998764
No 87
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.12 E-value=0.012 Score=66.83 Aligned_cols=50 Identities=24% Similarity=0.347 Sum_probs=35.8
Q ss_pred CCCcCccHHHHHHHHHhc------------CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCc
Q 002972 159 QGYPISSKSKFLRKLLEQ------------EETHQVILIVGLSGIGKSCLARQVASDPPERF 208 (862)
Q Consensus 159 ~~~g~~~~~~~l~~LL~~------------~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F 208 (862)
...|.+...+.+...+.. -..++-|.++|++|+|||+||+.+++.....|
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f 207 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF 207 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 344777766666665431 02367799999999999999999999765443
No 88
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.12 E-value=0.012 Score=70.87 Aligned_cols=187 Identities=13% Similarity=0.118 Sum_probs=97.0
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHH
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l 237 (862)
...+|.+.-.+.+...+..+.-.+.+.++|+.|+||||+|+.+++..-..-... .+-+...|...
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~-------~~~pC~~C~~~-------- 82 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD-------LLEPCQECIEN-------- 82 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCC-------CCCchhHHHHh--------
Confidence 455687777788888887655567788999999999999999987653110000 00000001100
Q ss_pred HHHHHHHHHHhccccccCCCCCCHH---HHHHHHHHH-hcCCCeEEEEEcCCCc--hHHHHHhhcc---CCCce-EEEEc
Q 002972 238 ARKISKFLVQIGFWKKIKDENSDLE---YLCCLLQEA-LYGKSILILLDDVWEQ--DIVERFAKLY---DNDCK-YLVTT 307 (862)
Q Consensus 238 ~~~i~~~l~~lg~~~~~~~~~~~~~---~l~~~l~~~-L~~kr~LLVLDDV~~~--~~~~~l~~~~---~~gsr-ILvTT 307 (862)
.. ................+ ++.+.+... ..+++-++|+|++... ..++.|...+ +..+. |++||
T Consensus 83 ---~~---~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTt 156 (725)
T PRK07133 83 ---VN---NSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATT 156 (725)
T ss_pred ---hc---CCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcC
Confidence 00 00000000000001122 222222211 2356679999999755 4566665433 33444 45555
Q ss_pred cchhhhh----hcccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchH-HHHHH
Q 002972 308 RNEAVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPL-TVAVM 368 (862)
Q Consensus 308 R~~~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPL-AI~~i 368 (862)
+...+.. .+..... +++.++....+...+...+... ..+.+..|++.++|-+- |+..+
T Consensus 157 e~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i---d~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 157 EVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISY---EKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred ChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 5544432 1221222 7888887777766654433211 23567789999988664 44433
No 89
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.11 E-value=0.011 Score=70.84 Aligned_cols=188 Identities=13% Similarity=0.165 Sum_probs=98.1
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHH
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l 237 (862)
...+|.+.-.+.+...+..+.-...+.++|..|+||||+|+.+++......... ....|. .-. .
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~----------~~~~c~--~c~----~ 79 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP----------KGRPCG--TCE----M 79 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC----------CCCCCc--cCH----H
Confidence 456687777777887777654456788999999999999999997654211000 000111 000 1
Q ss_pred HHHHHHHHHHhcccc-ccCC-CCCCHHHHHHHHHHHh-----cCCCeEEEEEcCCCc--hHHHHHhhcc---CCCceEEE
Q 002972 238 ARKISKFLVQIGFWK-KIKD-ENSDLEYLCCLLQEAL-----YGKSILILLDDVWEQ--DIVERFAKLY---DNDCKYLV 305 (862)
Q Consensus 238 ~~~i~~~l~~lg~~~-~~~~-~~~~~~~l~~~l~~~L-----~~kr~LLVLDDV~~~--~~~~~l~~~~---~~gsrILv 305 (862)
.+.+.. ..+..- .... .....+++.+.+ +.+ .+++-++|+|++... +..+.|...+ +..+.+|+
T Consensus 80 c~~i~~---~~~~d~~~i~~~~~~~vd~ir~ii-~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il 155 (585)
T PRK14950 80 CRAIAE---GSAVDVIEMDAASHTSVDDAREII-ERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFIL 155 (585)
T ss_pred HHHHhc---CCCCeEEEEeccccCCHHHHHHHH-HHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEE
Confidence 111110 000000 0000 111233332222 221 245678999999755 4466666544 34555555
Q ss_pred Ec-cchhhhhhcc--cccc---cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHHHH
Q 002972 306 TT-RNEAVYEITE--AEKV---ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVM 368 (862)
Q Consensus 306 TT-R~~~va~~~~--~~~~---~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~~i 368 (862)
+| ....+..... ...+ +++..+....+.+.+...+... .++.+..|++.++|.+..+...
T Consensus 156 ~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i---~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 156 ATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINL---EPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred EeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 55 3333332111 1112 5677776666666665433222 2366788999999988654433
No 90
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.08 E-value=0.015 Score=64.48 Aligned_cols=74 Identities=19% Similarity=0.239 Sum_probs=51.1
Q ss_pred HHHHHHHHhcC--CCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHH
Q 002972 167 SKFLRKLLEQE--ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKF 244 (862)
Q Consensus 167 ~~~l~~LL~~~--~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~ 244 (862)
.+.+..++... ....+|+|.|.-|+||||+.+.+.+..........+.+.+..|-.. ..+.....+...|...
T Consensus 5 a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~-----~~~~~~~~~~~~l~~~ 79 (325)
T PF07693_consen 5 AKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYD-----GEDDLWASFLEELFDQ 79 (325)
T ss_pred HHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCC-----CcchHHHHHHHHHHHH
Confidence 45566666654 4688999999999999999999998887664445556666678543 3344455555555554
Q ss_pred H
Q 002972 245 L 245 (862)
Q Consensus 245 l 245 (862)
+
T Consensus 80 l 80 (325)
T PF07693_consen 80 L 80 (325)
T ss_pred H
Confidence 4
No 91
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.08 E-value=0.0057 Score=76.31 Aligned_cols=47 Identities=15% Similarity=0.258 Sum_probs=38.3
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+.+||++..+.+..+|...... -+.++|.+|+|||++|..+++...
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~-n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKN-NPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccC-CeEEECCCCCCHHHHHHHHHHHHH
Confidence 46779999999999988765333 446999999999999999998754
No 92
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.07 E-value=0.011 Score=67.24 Aligned_cols=46 Identities=22% Similarity=0.176 Sum_probs=35.3
Q ss_pred CCCcCccHHHHHHHHHhcCC---------CceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 159 QGYPISSKSKFLRKLLEQEE---------THQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 159 ~~~g~~~~~~~l~~LL~~~~---------~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..+|.+.-.+.+...+..+. -.+-+.++|++|+|||++|+.+++..
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 34576666777777776543 35678899999999999999998754
No 93
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.06 E-value=0.00054 Score=76.16 Aligned_cols=30 Identities=27% Similarity=0.206 Sum_probs=25.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCC-Ccc
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPE-RFV 209 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~-~F~ 209 (862)
-.-.+|+|++|+||||||+.+|+.... +|+
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFD 199 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPE 199 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCC
Confidence 356789999999999999999998875 454
No 94
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.06 E-value=0.0065 Score=69.65 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=23.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPER 207 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~ 207 (862)
...+.|+|.+|+|||+|++++++....+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~ 163 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILEN 163 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 3568899999999999999999876543
No 95
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.014 Score=68.39 Aligned_cols=53 Identities=19% Similarity=0.424 Sum_probs=43.0
Q ss_pred ccCCCcCccHHHHHHHHHh-----cCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCcc
Q 002972 157 AEQGYPISSKSKFLRKLLE-----QEETHQVILIVGLSGIGKSCLARQVASDPPERFV 209 (862)
Q Consensus 157 ~~~~~g~~~~~~~l~~LL~-----~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~ 209 (862)
.+..||+++-.+.+-+.+. +...-++++.+|++|+|||++|+.++.....+|.
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 4678899987777766654 3334789999999999999999999999887774
No 96
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.97 E-value=0.02 Score=68.85 Aligned_cols=188 Identities=15% Similarity=0.193 Sum_probs=97.0
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHH
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l 237 (862)
...+|.+.-.+.+...+..+.-.+.+.++|+.|+||||+|+.++.......... ....|..... -
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~----------~~~~Cg~C~s--C--- 81 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTA----------DGEACNECES--C--- 81 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCC----------CCCCCCcchH--H---
Confidence 456687777777777777654467789999999999999999988653110000 0000110000 0
Q ss_pred HHHHHHHHHHhccccccCCCCCCHHHHHHHHHHH----hcCCCeEEEEEcCCCc--hHHHHHhhcc---CCCceEE-EEc
Q 002972 238 ARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEA----LYGKSILILLDDVWEQ--DIVERFAKLY---DNDCKYL-VTT 307 (862)
Q Consensus 238 ~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LLVLDDV~~~--~~~~~l~~~~---~~gsrIL-vTT 307 (862)
+.+.. -.......-........+++...+... ..+++-++|+|++... ..++.|...+ +.++.+| +||
T Consensus 82 -~~~~~-~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt 159 (614)
T PRK14971 82 -VAFNE-QRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATT 159 (614)
T ss_pred -HHHhc-CCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 00000 000000000000111233333332211 2245568899999765 3466666544 3456655 455
Q ss_pred cchhhhhh----cccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHH
Q 002972 308 RNEAVYEI----TEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTV 365 (862)
Q Consensus 308 R~~~va~~----~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI 365 (862)
....+... +..... +++.++....+.+.+...+... .++.+..|++.++|-.--+
T Consensus 160 ~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i---~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 160 EKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITA---EPEALNVIAQKADGGMRDA 219 (614)
T ss_pred CchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 54444432 222222 6888887777777665443222 2356788899999866433
No 97
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.96 E-value=0.026 Score=66.01 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=37.4
Q ss_pred CCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 159 QGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 159 ~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..+|.+.-.+.+...+..+.-.+.+.++|+.|+||||+|+.++....
T Consensus 17 diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred HccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45577777778888887654466788999999999999999988653
No 98
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.96 E-value=0.017 Score=64.14 Aligned_cols=88 Identities=15% Similarity=0.198 Sum_probs=51.5
Q ss_pred CCCeEEEEEcCCCc--hHHHHHhhcc---CCCceEEEEccchh-hhh----hcccccc-cCChhhHHHHHHHHhhhcccc
Q 002972 274 GKSILILLDDVWEQ--DIVERFAKLY---DNDCKYLVTTRNEA-VYE----ITEAEKV-ELSKDDIMEISKSILLYHSLL 342 (862)
Q Consensus 274 ~kr~LLVLDDV~~~--~~~~~l~~~~---~~gsrILvTTR~~~-va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~ 342 (862)
+++-++|+|+++.. +..+.+...+ +.++.+|+||.+.. +.. .+....+ +++.+++.+.+.+...
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~----- 179 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALP----- 179 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcc-----
Confidence 34555678999865 4455555443 35677777776653 332 1222222 6788888776654421
Q ss_pred cCcchHHHHHHHHhhhCCchHHHHHH
Q 002972 343 AEEELPAAAESLLERCGHHPLTVAVM 368 (862)
Q Consensus 343 ~~~~l~~~~~~Iv~~cgGLPLAI~~i 368 (862)
....+.+..++..++|.|+....+
T Consensus 180 --~~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 180 --ESDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred --cCChHHHHHHHHHcCCCHHHHHHH
Confidence 111244567889999999755443
No 99
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.93 E-value=0.023 Score=68.28 Aligned_cols=190 Identities=15% Similarity=0.148 Sum_probs=96.3
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHH
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l 237 (862)
...+|.+.-.+.+..++....-.+.+.++|..|+||||+|+.+++..-.....+. ....|.. - ..
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~---------~~~~Cg~--C----~~ 80 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP---------TPEPCGK--C----EL 80 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC---------CCCCCcc--c----HH
Confidence 3455777777788888876544567889999999999999999987642210000 0001210 0 01
Q ss_pred HHHHHHHHHHhccccccCCCCCCHHHHHHHHHHH----hcCCCeEEEEEcCCCc--hHHHHHhhcc---CCCceEEE-Ec
Q 002972 238 ARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEA----LYGKSILILLDDVWEQ--DIVERFAKLY---DNDCKYLV-TT 307 (862)
Q Consensus 238 ~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LLVLDDV~~~--~~~~~l~~~~---~~gsrILv-TT 307 (862)
.+.+.... ..+...-.......++.+.+.+... ..+++-++|+|++... +..+.|...+ +..+.+|+ |+
T Consensus 81 C~~i~~g~-h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~ 159 (620)
T PRK14948 81 CRAIAAGN-ALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATT 159 (620)
T ss_pred HHHHhcCC-CccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeC
Confidence 11111000 0000000000111233333222211 1245668999999865 4566666544 23445444 44
Q ss_pred cchhhhh----hcccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHH
Q 002972 308 RNEAVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVA 366 (862)
Q Consensus 308 R~~~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~ 366 (862)
....+.. .+....+ +++.++....+.+.+...+...+ ++.+..|++.++|.+..+.
T Consensus 160 ~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is---~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 160 DPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE---PEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred ChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 3333322 2222222 57777766666666544322211 3567788888888775443
No 100
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.88 E-value=0.013 Score=67.14 Aligned_cols=48 Identities=21% Similarity=0.373 Sum_probs=35.6
Q ss_pred CcCccHHHHHHHHHhc------------CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCc
Q 002972 161 YPISSKSKFLRKLLEQ------------EETHQVILIVGLSGIGKSCLARQVASDPPERF 208 (862)
Q Consensus 161 ~g~~~~~~~l~~LL~~------------~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F 208 (862)
.|.++..+.+...+.. -...+-+.++|++|+|||++|+.+++.....|
T Consensus 186 gGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~f 245 (438)
T PTZ00361 186 GGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATF 245 (438)
T ss_pred cCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence 4777777777766531 11356788999999999999999999765443
No 101
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.85 E-value=0.012 Score=73.65 Aligned_cols=47 Identities=13% Similarity=0.227 Sum_probs=38.4
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+.+|++...+.+..+|..... .-+.++|.+|+|||+||..++....
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~-~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTK-NNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCc-CceEEECCCCCCHHHHHHHHHHHhh
Confidence 5677999888888888876533 3455999999999999999998764
No 102
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.81 E-value=0.011 Score=69.82 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
..+.|+|..|+|||.|+.++++....
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~ 340 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARR 340 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45899999999999999999987653
No 103
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.80 E-value=0.028 Score=66.73 Aligned_cols=181 Identities=14% Similarity=0.131 Sum_probs=96.4
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCC-----CccCceEEEeeeeeeecccccCCCch
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPE-----RFVGGAVELGFGQWCSRAACNGSKSD 232 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~-----~F~~~~~~~~~~~w~~~~~~~~s~~~ 232 (862)
...+|.+.-.+.+...+..+.-.+.+.++|+.|+||||+|+.+++..-. .++|+. |...
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~-------------C~~C--- 79 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE-------------CSSC--- 79 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc-------------chHH---
Confidence 4566877777788888876544678999999999999999999987531 122211 1100
Q ss_pred HHHHHHHHHHHHHHHhccccccC-CCCCCHHHHHHHHHH----HhcCCCeEEEEEcCCCc--hHHHHHhhcc---CCCce
Q 002972 233 YQKRLARKISKFLVQIGFWKKIK-DENSDLEYLCCLLQE----ALYGKSILILLDDVWEQ--DIVERFAKLY---DNDCK 302 (862)
Q Consensus 233 ~~~~l~~~i~~~l~~lg~~~~~~-~~~~~~~~l~~~l~~----~L~~kr~LLVLDDV~~~--~~~~~l~~~~---~~gsr 302 (862)
+.+.. ....+.. ... ......+++.+.... -..+++-++|+|++... ..++.|...+ ++.+.
T Consensus 80 ------~~i~~-~~~~dv~-~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~v 151 (563)
T PRK06647 80 ------KSIDN-DNSLDVI-EIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIV 151 (563)
T ss_pred ------HHHHc-CCCCCeE-EecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEE
Confidence 11100 0000000 000 011223333322211 12456678999999755 3466666544 34555
Q ss_pred EEEEc-cchhhhh----hcccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHH
Q 002972 303 YLVTT-RNEAVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTV 365 (862)
Q Consensus 303 ILvTT-R~~~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI 365 (862)
+|++| ....+.. .+..... +++.++-...+.+.+...+.. -.++.+..|++.++|.+-.+
T Consensus 152 fI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~---id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 152 FIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK---YEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred EEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 55554 3333322 1221122 677777666666655433221 12466777888888877433
No 104
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.78 E-value=0.011 Score=73.88 Aligned_cols=47 Identities=13% Similarity=0.222 Sum_probs=37.8
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+.+|++...+.+...|..... .-+.++|.+|+|||++|..++++..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~-~n~lL~G~pGvGKT~l~~~la~~i~ 219 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTK-NNPVLIGEPGVGKTAIVEGLAQRIV 219 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCC-CceEEEcCCCCCHHHHHHHHHHHHh
Confidence 4677999888888888876433 3455899999999999999998764
No 105
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.73 E-value=0.0038 Score=64.19 Aligned_cols=111 Identities=13% Similarity=0.114 Sum_probs=64.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHhccccccCCCCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDENSD 260 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~lg~~~~~~~~~~~ 260 (862)
.+|.|+|+.|+||||++..+...........++.+.- ..+..... ...+ .. ......+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~-----------~~E~~~~~-~~~~---i~-------q~~vg~~ 59 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIED-----------PIEFVHES-KRSL---IN-------QREVGLD 59 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcC-----------CccccccC-ccce---ee-------ecccCCC
Confidence 4789999999999999998877654333222221110 00000000 0000 00 0000112
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHhhccCCCceEEEEccchhhh
Q 002972 261 LEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLYDNDCKYLVTTRNEAVY 313 (862)
Q Consensus 261 ~~~l~~~l~~~L~~kr~LLVLDDV~~~~~~~~l~~~~~~gsrILvTTR~~~va 313 (862)
.....+.++..+....=.+++|.+.+.+.+..+......|..++.|+...++.
T Consensus 60 ~~~~~~~i~~aLr~~pd~ii~gEird~e~~~~~l~~a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 60 TLSFENALKAALRQDPDVILVGEMRDLETIRLALTAAETGHLVMSTLHTNSAA 112 (198)
T ss_pred ccCHHHHHHHHhcCCcCEEEEcCCCCHHHHHHHHHHHHcCCEEEEEecCCcHH
Confidence 23345567777777778999999999887776655455677788888766544
No 106
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.71 E-value=0.045 Score=65.48 Aligned_cols=185 Identities=15% Similarity=0.154 Sum_probs=95.0
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCC-ccCceEEEeeeeeeecccccCCCchHHHH
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPER-FVGGAVELGFGQWCSRAACNGSKSDYQKR 236 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~w~~~~~~~~s~~~~~~~ 236 (862)
...+|.+.-.+.+...+..+.-.+.+.++|+.|+||||+|+.+++..-.. .. +...|... .
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~------------~~~~c~~c--~---- 77 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGL------------TAEPCNVC--P---- 77 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCC------------CCCCCCcc--H----
Confidence 45668787778888887765446778899999999999999998875311 00 00011100 0
Q ss_pred HHHHHHHHHHHhccccc---cC-CCCCCHHHH---HHHHHHH-hcCCCeEEEEEcCCCc--hHHHHHhhcc---CCCceE
Q 002972 237 LARKISKFLVQIGFWKK---IK-DENSDLEYL---CCLLQEA-LYGKSILILLDDVWEQ--DIVERFAKLY---DNDCKY 303 (862)
Q Consensus 237 l~~~i~~~l~~lg~~~~---~~-~~~~~~~~l---~~~l~~~-L~~kr~LLVLDDV~~~--~~~~~l~~~~---~~gsrI 303 (862)
..+.+.. |.... .. .....++++ ...+... ..+++-++|+|++... ...+.|...+ ++.+.+
T Consensus 78 ~c~~i~~-----g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~f 152 (576)
T PRK14965 78 PCVEITE-----GRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKF 152 (576)
T ss_pred HHHHHhc-----CCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEE
Confidence 0000100 00000 00 001122222 2221111 1245568999999755 3455555443 345555
Q ss_pred E-EEccchhhhhh----cccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCch-HHHHHH
Q 002972 304 L-VTTRNEAVYEI----TEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHP-LTVAVM 368 (862)
Q Consensus 304 L-vTTR~~~va~~----~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLP-LAI~~i 368 (862)
| +||....+... +..... +++.++....+...+...+... .++....|++.++|.. .|+..+
T Consensus 153 Il~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i---~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 153 IFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI---SDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred EEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 5 55554444432 111112 6777776666666554433221 2356677888888855 444443
No 107
>PRK10536 hypothetical protein; Provisional
Probab=96.71 E-value=0.023 Score=60.14 Aligned_cols=135 Identities=15% Similarity=0.164 Sum_probs=68.7
Q ss_pred cCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhC-C-CCCccCceEEEeeeeeeeccc----ccCCCchHHH
Q 002972 162 PISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASD-P-PERFVGGAVELGFGQWCSRAA----CNGSKSDYQK 235 (862)
Q Consensus 162 g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~-~-~~~F~~~~~~~~~~~w~~~~~----~~~s~~~~~~ 235 (862)
++......+...+.. ..+|.+.|.+|.|||+||.+++.+ . ...|. .++... .-++... -..+..+-..
T Consensus 59 p~n~~Q~~~l~al~~---~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~-kIiI~R--P~v~~ge~LGfLPG~~~eK~~ 132 (262)
T PRK10536 59 ARNEAQAHYLKAIES---KQLIFATGEAGCGKTWISAAKAAEALIHKDVD-RIIVTR--PVLQADEDLGFLPGDIAEKFA 132 (262)
T ss_pred CCCHHHHHHHHHHhc---CCeEEEECCCCCCHHHHHHHHHHHHHhcCCee-EEEEeC--CCCCchhhhCcCCCCHHHHHH
Confidence 455555555555543 249999999999999999998874 2 23343 222111 1111000 0001112222
Q ss_pred HHHHHHHHHHHHhccccccCCCCCCHHHHHH--------HHHHHhcCCC---eEEEEEcCCCc--hHHHHHhhccCCCce
Q 002972 236 RLARKISKFLVQIGFWKKIKDENSDLEYLCC--------LLQEALYGKS---ILILLDDVWEQ--DIVERFAKLYDNDCK 302 (862)
Q Consensus 236 ~l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~--------~l~~~L~~kr---~LLVLDDV~~~--~~~~~l~~~~~~gsr 302 (862)
-..+-+...|..+- .....+.... .=..+++++. -+||+|.+.+. .+...+....+.+|+
T Consensus 133 p~~~pi~D~L~~~~-------~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~g~~sk 205 (262)
T PRK10536 133 PYFRPVYDVLVRRL-------GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVT 205 (262)
T ss_pred HHHHHHHHHHHHHh-------ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhcCCCCE
Confidence 22233333222210 0001111100 0113456654 59999999866 456666666789999
Q ss_pred EEEEccc
Q 002972 303 YLVTTRN 309 (862)
Q Consensus 303 ILvTTR~ 309 (862)
+|+|--.
T Consensus 206 ~v~~GD~ 212 (262)
T PRK10536 206 VIVNGDI 212 (262)
T ss_pred EEEeCCh
Confidence 9998543
No 108
>PRK06921 hypothetical protein; Provisional
Probab=96.70 E-value=0.0032 Score=67.73 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=24.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPER 207 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~ 207 (862)
...+.++|.+|+|||.||.++++....+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~ 144 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRK 144 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 5678999999999999999999987644
No 109
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.69 E-value=0.0031 Score=68.93 Aligned_cols=50 Identities=26% Similarity=0.282 Sum_probs=41.6
Q ss_pred cCCCcCccHHHHHHHHHhcCCC--ceEEEEEcCCCCCHHHHHHHHHhCCCCC
Q 002972 158 EQGYPISSKSKFLRKLLEQEET--HQVILIVGLSGIGKSCLARQVASDPPER 207 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~--~~vI~I~G~gGiGKTtLA~~v~~~~~~~ 207 (862)
+...+|+...+.+..++.+.+. +..|-|+|-+|.|||.+.+++.+....+
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~ 57 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLE 57 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCc
Confidence 3455789999999999987655 5667999999999999999999987544
No 110
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.68 E-value=0.023 Score=64.86 Aligned_cols=234 Identities=18% Similarity=0.192 Sum_probs=118.0
Q ss_pred HHHHHHHHHhcCCCce-EEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHH
Q 002972 166 KSKFLRKLLEQEETHQ-VILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKF 244 (862)
Q Consensus 166 ~~~~l~~LL~~~~~~~-vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~ 244 (862)
+.+.+..+....+... ++.|.|+-++||||+++.+....... .+++++.. ......++...
T Consensus 22 ~~~~~~~l~~~~~~~~~i~~i~GpR~~GKTtll~~l~~~~~~~----~iy~~~~d----------~~~~~~~l~d~---- 83 (398)
T COG1373 22 RRKLLPRLIKKLDLRPFIILILGPRQVGKTTLLKLLIKGLLEE----IIYINFDD----------LRLDRIELLDL---- 83 (398)
T ss_pred HHhhhHHHHhhcccCCcEEEEECCccccHHHHHHHHHhhCCcc----eEEEEecc----------hhcchhhHHHH----
Confidence 3344444444322222 99999999999999997777765543 44444411 11111111111
Q ss_pred HHHhccccccCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHhhcc-CCCc-eEEEEccchhhhhhccc----
Q 002972 245 LVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLY-DNDC-KYLVTTRNEAVYEITEA---- 318 (862)
Q Consensus 245 l~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~~~~~l~~~~-~~gs-rILvTTR~~~va~~~~~---- 318 (862)
...+.+.-..++..++||.|.....|......+ ..|- +|++|+-+..+......
T Consensus 84 --------------------~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~~v~itgsss~ll~~~~~~~L~ 143 (398)
T COG1373 84 --------------------LRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNLDVLITGSSSSLLSKEISESLA 143 (398)
T ss_pred --------------------HHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccceEEEECCchhhhccchhhhcC
Confidence 111111111277899999999999998777544 2222 78888887765432211
Q ss_pred --cc---c-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHHHHhhhhhccCCHHHHHHHHHHhhhhh
Q 002972 319 --EK---V-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMGKALRKELRSEKWEKAITDLSTFA 392 (862)
Q Consensus 319 --~~---~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~~ig~~L~~~~~~~~W~~~l~~L~~~~ 392 (862)
.. + ||+-.|-..+.. ... ....... .-.-.-..||.|-++..-...-. ..+....++..
T Consensus 144 GR~~~~~l~PlSF~Efl~~~~-----~~~-~~~~~~~-~f~~Yl~~GGfP~~v~~~~~~~~---~~~~~~~~~~~----- 208 (398)
T COG1373 144 GRGKDLELYPLSFREFLKLKG-----EEI-EPSKLEL-LFEKYLETGGFPESVKADLSEKK---LKEYLDTILKR----- 208 (398)
T ss_pred CCceeEEECCCCHHHHHhhcc-----ccc-chhHHHH-HHHHHHHhCCCcHHHhCcchhhH---HHHHHHHHHHH-----
Confidence 11 1 888777544311 000 0111111 22233457999988764332111 01111111111
Q ss_pred ccCCCCCCccchhhhhcccccccchhhhh-ccCcHHHHHHHHHhcccCCCCCCChHHHHHHHHHhhhcchHHHHHHHHHH
Q 002972 393 TCAPGPVSYVNEKEAENTLTIFGSFEFSL-EAMPRDSRRLFIALAALSWAEPVPEACLEAIWSILVQKSLFSLAVCKLVE 471 (862)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~I~~~L~lSy-~~L~~~~k~cfl~lsiFp~~~~i~~~~L~~lW~a~g~~~~~e~~l~~L~~ 471 (862)
++. ...- ... ...++.+.+++... +..+.-..+.+.+. .....+...|++-|.+
T Consensus 209 -------------------Di~---~~~~~~~~-~~~k~i~~~l~~~~-g~~~s~~~la~~l~-~is~~Ti~~Yl~~le~ 263 (398)
T COG1373 209 -------------------DII---ERGKIENA-DLMKRILRFLASNI-GSPISYSSLARELK-GISKDTIRKYLSYLED 263 (398)
T ss_pred -------------------HHH---HHcCcccH-HHHHHHHHHHHhhc-CCccCHHHHHHHHh-ccchHHHHHHHHHHHH
Confidence 000 0000 011 34566666666653 34456666666653 1124456678888877
Q ss_pred CCCCcc
Q 002972 472 GSLLMK 477 (862)
Q Consensus 472 rsLl~~ 477 (862)
.-++..
T Consensus 264 ~fll~~ 269 (398)
T COG1373 264 AFLLFL 269 (398)
T ss_pred hhheEE
Confidence 777754
No 111
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.68 E-value=0.017 Score=67.33 Aligned_cols=48 Identities=25% Similarity=0.335 Sum_probs=34.6
Q ss_pred CCcCccHHHHHHHHHhc------------CCCceEEEEEcCCCCCHHHHHHHHHhCCCCC
Q 002972 160 GYPISSKSKFLRKLLEQ------------EETHQVILIVGLSGIGKSCLARQVASDPPER 207 (862)
Q Consensus 160 ~~g~~~~~~~l~~LL~~------------~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~ 207 (862)
..|.++..+.+...+.. -..++-+.++|++|+|||++|+++++.....
T Consensus 184 IgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 184 IGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred cCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 33677666666655421 1225668999999999999999999987643
No 112
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.67 E-value=0.018 Score=70.53 Aligned_cols=46 Identities=22% Similarity=0.220 Sum_probs=37.2
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.+.+|+++..+.+...|..... .-+.++|.+|+|||++|+.+++..
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~-~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRK-NNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCC-CCeEEECCCCCCHHHHHHHHHHHH
Confidence 4677999999998888877433 334589999999999999999764
No 113
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.63 E-value=0.03 Score=65.92 Aligned_cols=28 Identities=36% Similarity=0.532 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPER 207 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~ 207 (862)
++-+.++|++|+|||+||+.+++.....
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~~ 115 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVP 115 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 4568899999999999999999875433
No 114
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.07 Score=58.28 Aligned_cols=187 Identities=18% Similarity=0.261 Sum_probs=104.0
Q ss_pred cCccHHHHHHHHHhcC------------CCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCC
Q 002972 162 PISSKSKFLRKLLEQE------------ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGS 229 (862)
Q Consensus 162 g~~~~~~~l~~LL~~~------------~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s 229 (862)
|.++..+++.+..+-. ..++=|.++|++|.|||-||++|+++-...| +.+ .
T Consensus 155 GL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF------Irv-----------v 217 (406)
T COG1222 155 GLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF------IRV-----------V 217 (406)
T ss_pred CHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE------EEe-----------c
Confidence 6777777777765421 2367799999999999999999999875444 222 1
Q ss_pred CchHHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhc-CCCeEEEEEcCCCc-------------hHHHHHhh
Q 002972 230 KSDYQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALY-GKSILILLDDVWEQ-------------DIVERFAK 295 (862)
Q Consensus 230 ~~~~~~~l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~L~-~kr~LLVLDDV~~~-------------~~~~~l~~ 295 (862)
-+ .+.++.. | +-..+.+.+.+.-+ ..++.|.+|.++.. +.-..+..
T Consensus 218 gS----ElVqKYi------G----------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmle 277 (406)
T COG1222 218 GS----ELVQKYI------G----------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLE 277 (406)
T ss_pred cH----HHHHHHh------c----------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHH
Confidence 11 1222221 1 11133334444333 45899999998632 22222222
Q ss_pred c------cC--CCceEEEEccchhhhh--hcccccc------cCChhhHHHH-HHHHhhhcccccCcchHHHHHHHHhhh
Q 002972 296 L------YD--NDCKYLVTTRNEAVYE--ITEAEKV------ELSKDDIMEI-SKSILLYHSLLAEEELPAAAESLLERC 358 (862)
Q Consensus 296 ~------~~--~gsrILvTTR~~~va~--~~~~~~~------~L~~~ea~~L-f~~~~~~~~~~~~~~l~~~~~~Iv~~c 358 (862)
. |. .+-|||..|-..++.. ...+..+ ||...++... |+-....-....+-+++ .|++.|
T Consensus 278 LL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~ 353 (406)
T COG1222 278 LLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLT 353 (406)
T ss_pred HHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhc
Confidence 1 22 2458998887776654 3333322 7877777654 44443333333333444 455555
Q ss_pred CCch----HHHHHHhhhhh--cc---CCHHHHHHHHHHhh
Q 002972 359 GHHP----LTVAVMGKALR--KE---LRSEKWEKAITDLS 389 (862)
Q Consensus 359 gGLP----LAI~~ig~~L~--~~---~~~~~W~~~l~~L~ 389 (862)
.|.- -||.+=|++++ .. -+.+++.++.++.-
T Consensus 354 ~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 354 EGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVV 393 (406)
T ss_pred CCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHH
Confidence 5543 35556666664 22 24566666666543
No 115
>CHL00181 cbbX CbbX; Provisional
Probab=96.62 E-value=0.036 Score=60.36 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..+.++|.+|+||||+|+.+++..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999998753
No 116
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.59 E-value=0.0011 Score=50.42 Aligned_cols=40 Identities=23% Similarity=0.379 Sum_probs=33.0
Q ss_pred CcccEEEecccccccccChhhccccCCCcccccccchhHhh
Q 002972 564 KSISELEVSRICFSGILGPRIADLISRDSQSLTVVSAEAIT 604 (862)
Q Consensus 564 ~~LrvLdLs~~~i~~~LP~~I~~L~~Lr~L~l~~s~~~~i~ 604 (862)
+.|++|+|+++.|+. +|..|++|.+|++|++.+..+..++
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCCCc
Confidence 469999999999999 9999999999999999887554443
No 117
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.57 E-value=0.027 Score=65.14 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..-+.|+|..|+|||+|++++++...
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~ 166 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR 166 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999998764
No 118
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.57 E-value=0.0034 Score=70.28 Aligned_cols=93 Identities=19% Similarity=0.137 Sum_probs=51.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCC-ccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHhccccccCCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPER-FVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDEN 258 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~lg~~~~~~~~~ 258 (862)
-..++|+|++|+|||||++.+++....+ |+..+ |+-+.. .......++.+.+...+-. ...+..
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v-~VlLIg---------ER~~EVtDLqrsIlg~Vva-----st~d~p 232 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVEL-IVLLID---------ERPEEVTDMQRSVKGEVVA-----STFDEP 232 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEE-EEEEcC---------CCCccHHHHHHHhhceEEE-----ecCCCC
Confidence 4679999999999999999999988755 64333 333211 2223455555555321100 111111
Q ss_pred CCH-----HHHHHHHHHH-hcCCCeEEEEEcCCCc
Q 002972 259 SDL-----EYLCCLLQEA-LYGKSILILLDDVWEQ 287 (862)
Q Consensus 259 ~~~-----~~l~~~l~~~-L~~kr~LLVLDDV~~~ 287 (862)
... ....+..... -.+++.+|++|.+...
T Consensus 233 ~~~~~~va~~v~e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 233 ASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCCeEEEEEChhHH
Confidence 111 1111222222 3579999999998654
No 119
>CHL00176 ftsH cell division protein; Validated
Probab=96.56 E-value=0.023 Score=68.34 Aligned_cols=48 Identities=21% Similarity=0.344 Sum_probs=33.3
Q ss_pred CCCcCccHHHHHHHHHh---cC--------CCceEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 159 QGYPISSKSKFLRKLLE---QE--------ETHQVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 159 ~~~g~~~~~~~l~~LL~---~~--------~~~~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
...|.++..+.+..++. .. ...+-|.++|++|+|||+||+.++.....
T Consensus 184 dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~ 242 (638)
T CHL00176 184 DIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV 242 (638)
T ss_pred hccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34466665555555542 21 11456899999999999999999986543
No 120
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.56 E-value=0.44 Score=53.85 Aligned_cols=204 Identities=17% Similarity=0.184 Sum_probs=112.0
Q ss_pred CccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHH-HHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHH
Q 002972 163 ISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLA-RQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKI 241 (862)
Q Consensus 163 ~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA-~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i 241 (862)
|.+..+.|+.+|....+ ..|.|.|+-|+||+.|+ .++.++.+. ++++|...-+.. .+.......++.++
T Consensus 1 R~e~~~~L~~wL~e~~~-TFIvV~GPrGSGK~elV~d~~L~~r~~-----vL~IDC~~i~~a----r~D~~~I~~lA~qv 70 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPN-TFIVVQGPRGSGKRELVMDHVLKDRKN-----VLVIDCDQIVKA----RGDAAFIKNLASQV 70 (431)
T ss_pred CchHHHHHHHHHhcCCC-eEEEEECCCCCCccHHHHHHHHhCCCC-----EEEEEChHhhhc----cChHHHHHHHHHhc
Confidence 45677888888877543 68999999999999999 777766432 555554432210 02233333333322
Q ss_pred H---------------HHHHHhccccccCCC-CCCHHHHH----HHHHHHhc--------------------------CC
Q 002972 242 S---------------KFLVQIGFWKKIKDE-NSDLEYLC----CLLQEALY--------------------------GK 275 (862)
Q Consensus 242 ~---------------~~l~~lg~~~~~~~~-~~~~~~l~----~~l~~~L~--------------------------~k 275 (862)
. ....+ |.- +.... ..+.+... ......|+ .+
T Consensus 71 GY~PvFsw~nSiss~IDLa~q-Glt-GqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 71 GYFPVFSWMNSISSFIDLAVQ-GLT-GQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred CCCcchHHHHHHHHHHHHHHh-hcc-ccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 1 11111 100 11111 11222211 11111111 13
Q ss_pred CeEEEEEcCCCc-----hHHHHHhhcc-----CCCceEEEEccchhhhhh----cccccc------cCChhhHHHHHHHH
Q 002972 276 SILILLDDVWEQ-----DIVERFAKLY-----DNDCKYLVTTRNEAVYEI----TEAEKV------ELSKDDIMEISKSI 335 (862)
Q Consensus 276 r~LLVLDDV~~~-----~~~~~l~~~~-----~~gsrILvTTR~~~va~~----~~~~~~------~L~~~ea~~Lf~~~ 335 (862)
+=++|+||.... ..|+.+..|- .+=.+||++|-+...... ...... ..+.+-|..+....
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 678999998643 2355555543 344589998887655442 222221 35778888887776
Q ss_pred hhhcccc------------cC-----cchHHHHHHHHhhhCCchHHHHHHhhhhhccCCH
Q 002972 336 LLYHSLL------------AE-----EELPAAAESLLERCGHHPLTVAVMGKALRKELRS 378 (862)
Q Consensus 336 ~~~~~~~------------~~-----~~l~~~~~~Iv~~cgGLPLAI~~ig~~L~~~~~~ 378 (862)
+...... .+ ..........++.+||=-.-+..+++.++...++
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 6543110 00 1234556678888899999999999988855443
No 121
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.55 E-value=0.03 Score=60.10 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
...+.++|++|+||||+|+.+++..
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHH
Confidence 5568899999999999999998754
No 122
>PRK07261 topology modulation protein; Provisional
Probab=96.52 E-value=0.0073 Score=60.53 Aligned_cols=24 Identities=46% Similarity=0.631 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.|.|+|++|+||||||+.+.....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999987643
No 123
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.49 E-value=0.013 Score=61.55 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCccCceE
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPPERFVGGAV 213 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~ 213 (862)
-.++|+|..|+|||||...+......+| .+++
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f-~~I~ 45 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKF-DHIF 45 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccC-CEEE
Confidence 3678999999999999999999988888 3444
No 124
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.46 E-value=0.025 Score=59.19 Aligned_cols=49 Identities=29% Similarity=0.245 Sum_probs=33.8
Q ss_pred HHHHHHhcC-CCceEEEEEcCCCCCHHHHHHHHHhCCCCCc-----cCceEEEee
Q 002972 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPERF-----VGGAVELGF 217 (862)
Q Consensus 169 ~l~~LL~~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F-----~~~~~~~~~ 217 (862)
.+..+|..+ ..-.++.|+|.+|+|||+||.+++....... ...++|++.
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~ 61 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDT 61 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEec
Confidence 455666532 3367999999999999999999986543222 245666654
No 125
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.46 E-value=0.0019 Score=65.12 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..-+.++|.+|+|||.||..+++...
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~ 72 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAI 72 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhc
Confidence 45699999999999999999987543
No 126
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.43 E-value=0.051 Score=64.73 Aligned_cols=47 Identities=23% Similarity=0.273 Sum_probs=38.8
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
...+|.+...+.+...+..+.-.+.+.++|+.|+||||+|+.+++..
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal 62 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAV 62 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45668888888888888776556778899999999999999998764
No 127
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.42 E-value=0.046 Score=61.70 Aligned_cols=129 Identities=16% Similarity=0.200 Sum_probs=73.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCccCc-eEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHhccccccCCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGG-AVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDEN 258 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~-~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~lg~~~~~~~~~ 258 (862)
...+.|||..|.|||.|++++.+......+.. ++++ +.+.....+...+..
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~-------------~se~f~~~~v~a~~~--------------- 164 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYL-------------TSEDFTNDFVKALRD--------------- 164 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEec-------------cHHHHHHHHHHHHHh---------------
Confidence 66899999999999999999999877655433 3221 333444444444421
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEEEcCCCc---hHH-HHHh----hccCCCceEEEEccchhhh---------hhccccc-
Q 002972 259 SDLEYLCCLLQEALYGKSILILLDDVWEQ---DIV-ERFA----KLYDNDCKYLVTTRNEAVY---------EITEAEK- 320 (862)
Q Consensus 259 ~~~~~l~~~l~~~L~~kr~LLVLDDV~~~---~~~-~~l~----~~~~~gsrILvTTR~~~va---------~~~~~~~- 320 (862)
.-.+.+++.. .-=++++||++-. +.| +.+. .....|..||+|++...-. .......
T Consensus 165 ----~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~ 238 (408)
T COG0593 165 ----NEMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLV 238 (408)
T ss_pred ----hhHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeE
Confidence 1233455555 3348899999642 112 2222 3335566899998764211 1111111
Q ss_pred --c-cCChhhHHHHHHHHhhhcccc
Q 002972 321 --V-ELSKDDIMEISKSILLYHSLL 342 (862)
Q Consensus 321 --~-~L~~~ea~~Lf~~~~~~~~~~ 342 (862)
+ +.+.+....++.+.+...+..
T Consensus 239 ~~I~~Pd~e~r~aiL~kka~~~~~~ 263 (408)
T COG0593 239 VEIEPPDDETRLAILRKKAEDRGIE 263 (408)
T ss_pred EeeCCCCHHHHHHHHHHHHHhcCCC
Confidence 1 566666666666655444433
No 128
>PRK08181 transposase; Validated
Probab=96.35 E-value=0.0055 Score=65.89 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.-+.++|++|+|||.||..+++...
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~ 131 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALI 131 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHH
Confidence 4589999999999999999987653
No 129
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.31 E-value=0.013 Score=57.26 Aligned_cols=35 Identities=34% Similarity=0.437 Sum_probs=26.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEee
Q 002972 182 VILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 217 (862)
++.|+|.+|+||||++..++..... ....++|++.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~ 35 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDI 35 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEEC
Confidence 4689999999999999999876543 2344555554
No 130
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.31 E-value=0.015 Score=61.00 Aligned_cols=49 Identities=22% Similarity=0.297 Sum_probs=34.6
Q ss_pred HHHHHHhcC-CCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeee
Q 002972 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFG 218 (862)
Q Consensus 169 ~l~~LL~~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~ 218 (862)
.+..+|..+ ..-.++.|+|.+|+|||++|.+++...... ...++|++..
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~-~~~v~yi~~e 60 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKN-GKKVIYIDTE 60 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEECC
Confidence 355566543 336799999999999999999998755322 2456676653
No 131
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.31 E-value=0.018 Score=60.23 Aligned_cols=52 Identities=19% Similarity=0.330 Sum_probs=36.0
Q ss_pred cccccCCCcCccHHHHHHH----HHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 154 KVKAEQGYPISSKSKFLRK----LLEQEETHQVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 154 ~~~~~~~~g~~~~~~~l~~----LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
++.....+|.+...+.+.. .+.. ....-+.+||..|.|||+|++++.+....
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G-~pannvLL~G~rGtGKSSlVkall~~y~~ 78 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQG-LPANNVLLWGARGTGKSSLVKALLNEYAD 78 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcC-CCCcceEEecCCCCCHHHHHHHHHHHHhh
Confidence 4444566687765555443 2333 23556778999999999999999987653
No 132
>PRK08118 topology modulation protein; Reviewed
Probab=96.28 E-value=0.0097 Score=59.40 Aligned_cols=24 Identities=42% Similarity=0.637 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-|.|+|++|+||||||+.+++...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998865
No 133
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.27 E-value=0.0033 Score=58.71 Aligned_cols=23 Identities=48% Similarity=0.679 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
+|+|.|++|+||||+|+.+++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999865
No 134
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.27 E-value=0.04 Score=66.02 Aligned_cols=48 Identities=21% Similarity=0.271 Sum_probs=36.7
Q ss_pred cCCCcCccHHHHHHHHHhcC----CCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 158 EQGYPISSKSKFLRKLLEQE----ETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~----~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
....+-+...+.+..++... ...+++.|+|++|+||||+++.++....
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34456677777788777642 2246799999999999999999998764
No 135
>PRK12377 putative replication protein; Provisional
Probab=96.23 E-value=0.016 Score=61.54 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=24.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPER 207 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~ 207 (862)
...+.++|.+|+|||+||.++++....+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4578999999999999999999987543
No 136
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.21 E-value=0.11 Score=55.25 Aligned_cols=51 Identities=20% Similarity=0.312 Sum_probs=38.2
Q ss_pred cCCCcCccHHHHHHHHHhc----CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCc
Q 002972 158 EQGYPISSKSKFLRKLLEQ----EETHQVILIVGLSGIGKSCLARQVASDPPERF 208 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~----~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F 208 (862)
...+|.+.-.+.+.-.+.. +..+-.|.++|++|.||||||.-+++....++
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~ 80 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNL 80 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCe
Confidence 3455766666666555543 23477899999999999999999999887654
No 137
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.20 E-value=0.0076 Score=64.37 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
...-+.++|.+|+|||.||.++.+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~ 130 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL 130 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH
Confidence 456789999999999999999999877
No 138
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.20 E-value=0.048 Score=59.37 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-+.++|.+|+|||++|+.+++...
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~ 83 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILH 83 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHH
Confidence 588999999999999988876543
No 139
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.18 E-value=0.59 Score=58.71 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=31.2
Q ss_pred CCcCccHHHHHHHHHhc-------CC-CceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 160 GYPISSKSKFLRKLLEQ-------EE-THQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 160 ~~g~~~~~~~l~~LL~~-------~~-~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.+|.+.-++.+..-+.. .+ ...++.++|+.|+|||+||+.+++..
T Consensus 570 viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 570 VIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred EeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44666655555544432 11 13578899999999999999999765
No 140
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.21 Score=60.61 Aligned_cols=95 Identities=22% Similarity=0.298 Sum_probs=52.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHhccccccCCCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDENS 259 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~lg~~~~~~~~~~ 259 (862)
..+....|+.|+|||-||++++...-+.= ...+-+|+. ++..+.-.+.+. | .++.--
T Consensus 521 igsFlF~GPTGVGKTELAkaLA~~Lfg~e-~aliR~DMS------------Ey~EkHsVSrLI------G----aPPGYV 577 (786)
T COG0542 521 IGSFLFLGPTGVGKTELAKALAEALFGDE-QALIRIDMS------------EYMEKHSVSRLI------G----APPGYV 577 (786)
T ss_pred ceEEEeeCCCcccHHHHHHHHHHHhcCCC-ccceeechH------------HHHHHHHHHHHh------C----CCCCCc
Confidence 56888899999999999999987653210 112222221 111122222221 2 222221
Q ss_pred CHHHHHHHHHHHhcCCCe-EEEEEcCC--CchHHHHHhhccC
Q 002972 260 DLEYLCCLLQEALYGKSI-LILLDDVW--EQDIVERFAKLYD 298 (862)
Q Consensus 260 ~~~~l~~~l~~~L~~kr~-LLVLDDV~--~~~~~~~l~~~~~ 298 (862)
..++ --.+-+..++++| +|.||.+. +++..+.|...+.
T Consensus 578 Gyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlD 618 (786)
T COG0542 578 GYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLD 618 (786)
T ss_pred eecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhc
Confidence 1111 2245556667877 78899997 4567777776553
No 141
>PRK09183 transposase/IS protein; Provisional
Probab=96.08 E-value=0.015 Score=62.43 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
...+.|+|++|+|||+||..+++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3467799999999999999997653
No 142
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.13 Score=60.79 Aligned_cols=53 Identities=21% Similarity=0.416 Sum_probs=42.3
Q ss_pred ccCCCcCccHHHHHHHHHhc-----CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCcc
Q 002972 157 AEQGYPISSKSKFLRKLLEQ-----EETHQVILIVGLSGIGKSCLARQVASDPPERFV 209 (862)
Q Consensus 157 ~~~~~g~~~~~~~l~~LL~~-----~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~ 209 (862)
...+||.++-.+.|.++|.- .-.-+++++||++|+|||+|++.+++....+|.
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkfv 379 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFV 379 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEE
Confidence 36788999877777666542 223579999999999999999999999888874
No 143
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.97 E-value=0.04 Score=67.98 Aligned_cols=26 Identities=35% Similarity=0.486 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..++.++|++|+|||+||+.+++...
T Consensus 484 ~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 484 VGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred ceeEEEECCCCccHHHHHHHHHHHhc
Confidence 44688999999999999999998763
No 144
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.96 E-value=0.1 Score=56.25 Aligned_cols=135 Identities=16% Similarity=0.092 Sum_probs=72.6
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHH
Q 002972 166 KSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFL 245 (862)
Q Consensus 166 ~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l 245 (862)
....+..+... .+..-++|+|..|+|||||.+.++...... .+.++++=.. + .......++...+. .+
T Consensus 98 ~~~~l~~l~~~-~~~~~~~i~g~~g~GKttl~~~l~~~~~~~--~G~i~~~g~~-v-------~~~d~~~ei~~~~~-~~ 165 (270)
T TIGR02858 98 ADKLLPYLVRN-NRVLNTLIISPPQCGKTTLLRDLARILSTG--ISQLGLRGKK-V-------GIVDERSEIAGCVN-GV 165 (270)
T ss_pred HHHHHHHHHhC-CCeeEEEEEcCCCCCHHHHHHHHhCccCCC--CceEEECCEE-e-------ecchhHHHHHHHhc-cc
Confidence 34445555543 346789999999999999999999877633 2223322111 1 11111123332211 01
Q ss_pred HHhccccccCCCCCCHHHHHHHHHHHh-cCCCeEEEEEcCCCchHHHHHhhccCCCceEEEEccchhhhh
Q 002972 246 VQIGFWKKIKDENSDLEYLCCLLQEAL-YGKSILILLDDVWEQDIVERFAKLYDNDCKYLVTTRNEAVYE 314 (862)
Q Consensus 246 ~~lg~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LLVLDDV~~~~~~~~l~~~~~~gsrILvTTR~~~va~ 314 (862)
.+.... .......+... ...+...+ ...+=++++|.+-..+.+..+......|..||+||.+..+..
T Consensus 166 ~q~~~~-~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 166 PQHDVG-IRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALHAGVSIIATAHGRDVED 233 (270)
T ss_pred cccccc-ccccccccchH-HHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEechhHHHH
Confidence 110000 00000011111 11122222 247889999999888877777665667889999999876544
No 145
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.95 E-value=0.017 Score=64.04 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
...+.++|.+|+|||.||.++++....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~ 209 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLD 209 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHH
Confidence 367999999999999999999987643
No 146
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.95 E-value=0.029 Score=58.35 Aligned_cols=48 Identities=25% Similarity=0.250 Sum_probs=33.7
Q ss_pred HHHHHHhcC-CCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEee
Q 002972 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (862)
Q Consensus 169 ~l~~LL~~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 217 (862)
.+..+|..+ ..-.++.|.|.+|+||||+|.+++.....+ ...++|++.
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~-g~~v~yi~~ 55 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQ-GKKVAYIDT 55 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEC
Confidence 456666543 336799999999999999999998765432 234566553
No 147
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.95 E-value=0.95 Score=57.01 Aligned_cols=47 Identities=17% Similarity=0.213 Sum_probs=33.8
Q ss_pred CCCcCccHHHHHHHHHhc------CC--CceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 159 QGYPISSKSKFLRKLLEQ------EE--THQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 159 ~~~g~~~~~~~l~~LL~~------~~--~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..+|.+.-++.+...+.. ++ ...++.++|++|+|||++|+.++....
T Consensus 566 ~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~ 620 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLF 620 (852)
T ss_pred ccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 355777666666655542 11 245788999999999999999998653
No 148
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=95.95 E-value=0.2 Score=55.36 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=36.7
Q ss_pred CCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 159 QGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 159 ~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..+|.+.-.+.+...+..+.-.+...++|+.|+||+++|..+++..
T Consensus 5 ~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~l 50 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGL 50 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3457777777777777765446899999999999999999988764
No 149
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.92 E-value=0.02 Score=61.42 Aligned_cols=38 Identities=24% Similarity=0.296 Sum_probs=31.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEee
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 217 (862)
-.-++|.|.+|+|||||+..++++.+.+|.+.+|+.-+
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~i 106 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGV 106 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEe
Confidence 35789999999999999999999988777766665443
No 150
>PRK06526 transposase; Provisional
Probab=95.92 E-value=0.018 Score=61.55 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..-+.|+|++|+|||+||..+.+...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH
Confidence 45689999999999999999987643
No 151
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.91 E-value=0.016 Score=59.86 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=28.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEee
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 217 (862)
-.++.|+|.+|+|||++|.+++...... ...++|++.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~-g~~v~yi~~ 48 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ-GKKVVYIDT 48 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEEC
Confidence 6799999999999999999998765333 245677665
No 152
>PRK06762 hypothetical protein; Provisional
Probab=95.89 E-value=0.11 Score=51.60 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
+.+|.|.|++|+||||+|+.+++..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 153
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.89 E-value=1.7 Score=49.99 Aligned_cols=50 Identities=18% Similarity=0.248 Sum_probs=32.5
Q ss_pred HHHHHHhcCCCeEEEEEcCCCch-------HHHHHhhccCCCceEEEEccchhhhhh
Q 002972 266 CLLQEALYGKSILILLDDVWEQD-------IVERFAKLYDNDCKYLVTTRNEAVYEI 315 (862)
Q Consensus 266 ~~l~~~L~~kr~LLVLDDV~~~~-------~~~~l~~~~~~gsrILvTTR~~~va~~ 315 (862)
-.+.+.+.+.++|+|||.-+..- ..+.+...-..|+.+|+.|..+.+...
T Consensus 481 IaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~ 537 (580)
T COG4618 481 IALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALAS 537 (580)
T ss_pred HHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhh
Confidence 35788899999999999875431 123444433567776666666655543
No 154
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.86 E-value=0.6 Score=58.55 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=32.0
Q ss_pred CCCcCccHHHHHHHHHhc-------CC-CceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 159 QGYPISSKSKFLRKLLEQ-------EE-THQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 159 ~~~g~~~~~~~l~~LL~~-------~~-~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..+|.+.-.+.+...+.. .. ...++.++|+.|+|||+||+.+++..
T Consensus 510 ~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 510 RIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred cCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 455766666666554431 11 24567789999999999999999865
No 155
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.84 E-value=0.015 Score=66.28 Aligned_cols=43 Identities=23% Similarity=0.320 Sum_probs=30.5
Q ss_pred CcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 161 YPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 161 ~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
++.++..+.+...+.. .+.|.++|++|+|||++|+.+++....
T Consensus 178 ~i~e~~le~l~~~L~~---~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 178 FIPETTIETILKRLTI---KKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred cCCHHHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3444455555444443 357788999999999999999987753
No 156
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.84 E-value=0.052 Score=57.24 Aligned_cols=47 Identities=26% Similarity=0.220 Sum_probs=31.9
Q ss_pred HHHHHHhcC-CCceEEEEEcCCCCCHHHHHHHHHhCC-CCCccCceEEEee
Q 002972 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDP-PERFVGGAVELGF 217 (862)
Q Consensus 169 ~l~~LL~~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~-~~~F~~~~~~~~~ 217 (862)
-+..+|..+ +.-+++.|+|.+|+|||+||.+++... +. ...++|+++
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~ 61 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITT 61 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEc
Confidence 345555443 346799999999999999999996542 32 234555554
No 157
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.79 E-value=0.14 Score=63.51 Aligned_cols=29 Identities=34% Similarity=0.605 Sum_probs=24.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCc
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERF 208 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F 208 (862)
++-|.++|++|+|||+||+++++.....|
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~f 515 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGANF 515 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 45688999999999999999999865443
No 158
>PRK08233 hypothetical protein; Provisional
Probab=95.79 E-value=0.045 Score=54.92 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..+|+|.|.+|+||||||..++....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998764
No 159
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.76 E-value=0.04 Score=57.96 Aligned_cols=49 Identities=33% Similarity=0.325 Sum_probs=33.5
Q ss_pred HHHHHHhcC-CCceEEEEEcCCCCCHHHHHHHHHhCCC--CCc---cCceEEEee
Q 002972 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPP--ERF---VGGAVELGF 217 (862)
Q Consensus 169 ~l~~LL~~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~--~~F---~~~~~~~~~ 217 (862)
.+..+|.+. ..-.++.|+|.+|+|||+||.+++.... ..+ ..+++|++.
T Consensus 7 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~ 61 (235)
T cd01123 7 ALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDT 61 (235)
T ss_pred hhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeC
Confidence 345555542 2367999999999999999999975432 111 356777665
No 160
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.036 Score=64.00 Aligned_cols=92 Identities=16% Similarity=0.212 Sum_probs=59.3
Q ss_pred CCCcCccHHHHHHHHHhcC-----------CCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeeccccc
Q 002972 159 QGYPISSKSKFLRKLLEQE-----------ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACN 227 (862)
Q Consensus 159 ~~~g~~~~~~~l~~LL~~~-----------~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~ 227 (862)
..-|.+....++.+++..- ..++=|.+||++|+|||.||+++++....-|- .+
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~------~i---------- 254 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFL------SI---------- 254 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceE------ee----------
Confidence 3447787777777765321 12567889999999999999999998875542 11
Q ss_pred CCCchHHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCC
Q 002972 228 GSKSDYQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWE 286 (862)
Q Consensus 228 ~s~~~~~~~l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~ 286 (862)
+-+ .|... -.-.+.+.+.+.+.+.-..-+|++++|+++-
T Consensus 255 -sAp----eivSG---------------vSGESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 255 -SAP----EIVSG---------------VSGESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred -cch----hhhcc---------------cCcccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 111 11111 1112444555555666667899999999973
No 161
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.71 E-value=0.15 Score=51.42 Aligned_cols=126 Identities=19% Similarity=0.164 Sum_probs=63.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHhcccc---ccCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWK---KIKD 256 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~lg~~~---~~~~ 256 (862)
-.+++|.|..|.|||||.+.++..... . .+.++++-.... . ........-..-+.+.+...+... ....
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~-~-~G~v~~~g~~~~-~-----~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~ 96 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKP-S-SGEILLDGKDLA-S-----LSPKELARKIAYVPQALELLGLAHLADRPFN 96 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-C-CcEEEECCEECC-c-----CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcc
Confidence 459999999999999999999876542 2 233333211110 0 000011111111111233333211 1111
Q ss_pred CCCCHHHHHHHHHHHhcCCCeEEEEEcCCCc---hHHHHHh----hccCC-CceEEEEccchhhh
Q 002972 257 ENSDLEYLCCLLQEALYGKSILILLDDVWEQ---DIVERFA----KLYDN-DCKYLVTTRNEAVY 313 (862)
Q Consensus 257 ~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~---~~~~~l~----~~~~~-gsrILvTTR~~~va 313 (862)
..+.-+...-.+...+-..+-++++|+.-.. ...+.+. ..... |..||++|.+....
T Consensus 97 ~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 97 ELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 1222233333456666777889999997533 2222222 22233 67888888886644
No 162
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.69 E-value=0.085 Score=52.31 Aligned_cols=112 Identities=18% Similarity=0.139 Sum_probs=59.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHhccccccCCCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDENS 259 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~lg~~~~~~~~~~ 259 (862)
-.+++|.|..|.|||||.+.++-.... . .+.++++-.. + .... .....+. ..+.. ...+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~-~G~v~~~g~~-~-------~~~~-~~~~~~~------~i~~~----~qLS 84 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKP-D-SGEILVDGKE-V-------SFAS-PRDARRA------GIAMV----YQLS 84 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-C-CeEEEECCEE-C-------CcCC-HHHHHhc------CeEEE----EecC
Confidence 359999999999999999999876542 1 2333322110 0 1000 0000000 11110 0122
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEcCCCc---hHH----HHHhhccCCCceEEEEccchhh
Q 002972 260 DLEYLCCLLQEALYGKSILILLDDVWEQ---DIV----ERFAKLYDNDCKYLVTTRNEAV 312 (862)
Q Consensus 260 ~~~~l~~~l~~~L~~kr~LLVLDDV~~~---~~~----~~l~~~~~~gsrILvTTR~~~v 312 (862)
.-+...-.+...+-.++-++++|+.... ... +.+......|..||++|.+...
T Consensus 85 ~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 85 VGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 2233334455666677789999997543 222 2332322347788888888753
No 163
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.57 E-value=0.67 Score=48.72 Aligned_cols=187 Identities=15% Similarity=0.159 Sum_probs=96.4
Q ss_pred CccHHHHHHHHHhc-CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHH
Q 002972 163 ISSKSKFLRKLLEQ-EETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKI 241 (862)
Q Consensus 163 ~~~~~~~l~~LL~~-~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i 241 (862)
..++.+.+..+-.. ..+..++.++|.-|.|||.+.++........-.+ ++.++ ........+...+
T Consensus 33 ~a~h~e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~-~v~i~------------~~~~s~~~~~~ai 99 (269)
T COG3267 33 AADHNEALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNEDQVA-VVVID------------KPTLSDATLLEAI 99 (269)
T ss_pred hhhhhHHHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcCCCceE-EEEec------------CcchhHHHHHHHH
Confidence 33444444444332 2245699999999999999999665544322111 11111 1122223333444
Q ss_pred HHHHHHhccccccCCCCCCH----HHHHHHHHHHh-cCCC-eEEEEEcCCCc--hHHHHHh---hccCCCc---eEEEEc
Q 002972 242 SKFLVQIGFWKKIKDENSDL----EYLCCLLQEAL-YGKS-ILILLDDVWEQ--DIVERFA---KLYDNDC---KYLVTT 307 (862)
Q Consensus 242 ~~~l~~lg~~~~~~~~~~~~----~~l~~~l~~~L-~~kr-~LLVLDDV~~~--~~~~~l~---~~~~~gs---rILvTT 307 (862)
...+. . ...... ++..+.+.... +++| ..+++|+..+. +..+.++ ..-..++ +|+..-
T Consensus 100 ~~~l~-------~-~p~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~G 171 (269)
T COG3267 100 VADLE-------S-QPKVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIG 171 (269)
T ss_pred HHHhc-------c-CccchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecC
Confidence 33221 1 111222 33333444433 4577 89999998765 3344333 2112222 233332
Q ss_pred cch--------hhhh---hccc-ccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHHHHhh
Q 002972 308 RNE--------AVYE---ITEA-EKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMGK 370 (862)
Q Consensus 308 R~~--------~va~---~~~~-~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~~ig~ 370 (862)
.-+ .... .+.. ... |++.++...+++..+.......+--..+....|.....|.|.+|..++.
T Consensus 172 qp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 172 QPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred CcccchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 221 1111 1111 111 8999988888887776553322222346677899999999999987764
No 164
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.56 E-value=3.7 Score=50.31 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=32.6
Q ss_pred HHHHHHhcCCCeEEEEEcCCCc-------hHHHHHhhccCCCceEEEEccchhhhh
Q 002972 266 CLLQEALYGKSILILLDDVWEQ-------DIVERFAKLYDNDCKYLVTTRNEAVYE 314 (862)
Q Consensus 266 ~~l~~~L~~kr~LLVLDDV~~~-------~~~~~l~~~~~~gsrILvTTR~~~va~ 314 (862)
-.+.+.+-.++-+|+||..-+. ...+.+..+....+.|+||=|...+..
T Consensus 618 lalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~ 673 (709)
T COG2274 618 LALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRS 673 (709)
T ss_pred HHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhh
Confidence 3567778888899999987533 123455555555667888888775544
No 165
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.54 E-value=0.046 Score=61.16 Aligned_cols=119 Identities=19% Similarity=0.256 Sum_probs=68.3
Q ss_pred HHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHh
Q 002972 169 FLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQI 248 (862)
Q Consensus 169 ~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~l 248 (862)
.+..++... ...|.|.|+.|+||||+...+.+.........++.+. ...+.. ........
T Consensus 113 ~l~~~~~~~--~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiE------------dp~E~~---~~~~~~~i--- 172 (343)
T TIGR01420 113 VLRELAERP--RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIE------------DPIEYV---HRNKRSLI--- 172 (343)
T ss_pred HHHHHHhhc--CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEc------------CChhhh---ccCccceE---
Confidence 455555432 3689999999999999999988766543333332110 110000 00000000
Q ss_pred ccccccCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHhhccCCCceEEEEccchh
Q 002972 249 GFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLYDNDCKYLVTTRNEA 311 (862)
Q Consensus 249 g~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~~~~~l~~~~~~gsrILvTTR~~~ 311 (862)
.......+.......++..|...+=.|++|.+.+.+.+.........|..|+.|....+
T Consensus 173 ----~q~evg~~~~~~~~~l~~~lr~~pd~i~vgEird~~~~~~~l~aa~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 173 ----NQREVGLDTLSFANALRAALREDPDVILIGEMRDLETVELALTAAETGHLVFGTLHTNS 231 (343)
T ss_pred ----EccccCCCCcCHHHHHHHhhccCCCEEEEeCCCCHHHHHHHHHHHHcCCcEEEEEcCCC
Confidence 00001111223556677888889999999999999888765544456766666665543
No 166
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.50 E-value=0.15 Score=55.32 Aligned_cols=140 Identities=20% Similarity=0.164 Sum_probs=79.3
Q ss_pred CCCcCccHHHHHHHHHhcC---CCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHH
Q 002972 159 QGYPISSKSKFLRKLLEQE---ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQK 235 (862)
Q Consensus 159 ~~~g~~~~~~~l~~LL~~~---~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~ 235 (862)
+.+|..+..+.+..++... ++...|.|+|+.|.|||+|......+ ...|....+-+.+.+.+. ...-..+
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~------~dk~al~ 97 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQ------TDKIALK 97 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccch------hhHHHHH
Confidence 4557777788888887652 34557889999999999988887776 334544455555544321 2222455
Q ss_pred HHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhcC------CCeEEEEEcCCCch----H--HHHHh----hccCC
Q 002972 236 RLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYG------KSILILLDDVWEQD----I--VERFA----KLYDN 299 (862)
Q Consensus 236 ~l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~L~~------kr~LLVLDDV~~~~----~--~~~l~----~~~~~ 299 (862)
.|.+++...+...+. ...+..+-...+-..|+. -++.+|+|..+-.. + +-.+. ..-.|
T Consensus 98 ~I~rql~~e~~~~~k------~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~P 171 (408)
T KOG2228|consen 98 GITRQLALELNRIVK------SFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAP 171 (408)
T ss_pred HHHHHHHHHHhhhhe------eecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCC
Confidence 666666555443321 111222333344444432 35888888876331 1 11111 11235
Q ss_pred CceEEEEccchh
Q 002972 300 DCKYLVTTRNEA 311 (862)
Q Consensus 300 gsrILvTTR~~~ 311 (862)
-|-|-+|||-..
T Consensus 172 iciig~Ttrld~ 183 (408)
T KOG2228|consen 172 ICIIGVTTRLDI 183 (408)
T ss_pred eEEEEeeccccH
Confidence 567889998753
No 167
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.50 E-value=0.055 Score=54.54 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
+|.|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999865
No 168
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.49 E-value=0.088 Score=55.68 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=32.2
Q ss_pred HHHHHHhcC-CCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEee
Q 002972 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (862)
Q Consensus 169 ~l~~LL~~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 217 (862)
.+..+|..+ ..-.++.|.|.+|+|||++|.++......+ ...++|+.+
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~-ge~~lyvs~ 57 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGIYVAL 57 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEEEe
Confidence 345566543 346799999999999999999976543211 234566554
No 169
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.49 E-value=0.026 Score=56.44 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
++.|.|.+|+||||+|..++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 68999999999999999998764
No 170
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.48 E-value=0.043 Score=55.06 Aligned_cols=31 Identities=29% Similarity=0.471 Sum_probs=26.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCcc
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPPERFV 209 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~ 209 (862)
...+|.+.|++|+||||+|+.+++.....+.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~ 36 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYS 36 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 3569999999999999999999988765544
No 171
>PRK05973 replicative DNA helicase; Provisional
Probab=95.41 E-value=0.13 Score=54.23 Aligned_cols=141 Identities=10% Similarity=0.144 Sum_probs=71.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHhcccccc----
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKI---- 254 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~lg~~~~~---- 254 (862)
.-.++.|.|.+|+|||++|.+++.....+ ...++|+++. ....++.+.+.. .|.....
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~-Ge~vlyfSlE-------------es~~~i~~R~~s----~g~d~~~~~~~ 124 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKS-GRTGVFFTLE-------------YTEQDVRDRLRA----LGADRAQFADL 124 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEEe-------------CCHHHHHHHHHH----cCCChHHhccc
Confidence 34689999999999999999987755322 2345555542 222333333322 1211000
Q ss_pred ----CCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCc------hHH----HHHhhcc-CCCceEEEEccchhhhhh-ccc
Q 002972 255 ----KDENSDLEYLCCLLQEALYGKSILILLDDVWEQ------DIV----ERFAKLY-DNDCKYLVTTRNEAVYEI-TEA 318 (862)
Q Consensus 255 ----~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~------~~~----~~l~~~~-~~gsrILvTTR~~~va~~-~~~ 318 (862)
.......+.....+.. +.+.=++|+|-+... ... ..+.... ..|..||+|+....-... ...
T Consensus 125 ~~~d~~d~~~~~~ii~~l~~--~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r~~e~~~~~ 202 (237)
T PRK05973 125 FEFDTSDAICADYIIARLAS--APRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQIDRSFDPSAKP 202 (237)
T ss_pred eEeecCCCCCHHHHHHHHHH--hhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecCccccccCCCC
Confidence 0011133333333333 123468999987422 111 1222222 468888888875543321 111
Q ss_pred cc----ccCChhhHHHHHHHHhhhc
Q 002972 319 EK----VELSKDDIMEISKSILLYH 339 (862)
Q Consensus 319 ~~----~~L~~~ea~~Lf~~~~~~~ 339 (862)
.+ +.++..--..||.+..|.+
T Consensus 203 ~P~laDlR~~~~~d~~~f~~~~~~~ 227 (237)
T PRK05973 203 LPDIRDVRLPNPLDLSLFDKACFLN 227 (237)
T ss_pred CCChhhcCCCChhhHHHhhhhheec
Confidence 11 1444444467777766654
No 172
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.40 E-value=0.031 Score=61.34 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+-+.|+|..|+|||.||.++++...
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~ 181 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELA 181 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999875
No 173
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.34 E-value=0.45 Score=52.98 Aligned_cols=42 Identities=21% Similarity=0.257 Sum_probs=32.6
Q ss_pred CccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 163 ISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 163 ~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-+.-.+.+...+..+.-.+...++|+.|+||||+|..+++..
T Consensus 11 q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l 52 (329)
T PRK08058 11 QPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSL 52 (329)
T ss_pred HHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 444556667777655447788999999999999999998764
No 174
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.33 E-value=0.045 Score=58.04 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
...+.++|.+|+|||+||.++++....
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~ 125 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLL 125 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 457889999999999999999987653
No 175
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.32 E-value=0.024 Score=58.25 Aligned_cols=126 Identities=17% Similarity=0.184 Sum_probs=56.5
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCC--CCCccCceEEEeeeeeeecccccCCCchHHHHHHHH----
Q 002972 167 SKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDP--PERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARK---- 240 (862)
Q Consensus 167 ~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~--~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~---- 240 (862)
...+..++ +..++.+.|++|.|||.||.+.+-+. ..+|. .+++. +..+.+.. ...+.+-++-++
T Consensus 10 ~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~-kiii~--Rp~v~~~~---~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 10 KFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYD-KIIIT--RPPVEAGE---DLGFLPGDLEEKMEPY 79 (205)
T ss_dssp HHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-S-EEEEE--E-S--TT-------SS---------TT
T ss_pred HHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCc-EEEEE--ecCCCCcc---ccccCCCCHHHHHHHH
Confidence 33444455 24599999999999999999887543 24443 33332 11221100 111112222122
Q ss_pred ---HHHHHHHhccccccCCCCCCHHHHHHH------HHHHhcCC---CeEEEEEcCCCc--hHHHHHhhccCCCceEEEE
Q 002972 241 ---ISKFLVQIGFWKKIKDENSDLEYLCCL------LQEALYGK---SILILLDDVWEQ--DIVERFAKLYDNDCKYLVT 306 (862)
Q Consensus 241 ---i~~~l~~lg~~~~~~~~~~~~~~l~~~------l~~~L~~k---r~LLVLDDV~~~--~~~~~l~~~~~~gsrILvT 306 (862)
+...+..+ ......+.+.+. -..+++|+ +.++|+|++.+. .++..+..-.+.|||+|++
T Consensus 80 ~~p~~d~l~~~-------~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~g~~skii~~ 152 (205)
T PF02562_consen 80 LRPIYDALEEL-------FGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRIGEGSKIIIT 152 (205)
T ss_dssp THHHHHHHTTT-------S-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEE
T ss_pred HHHHHHHHHHH-------hChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcccCCCcEEEEe
Confidence 11111110 011223222210 01223443 579999999765 6888888778999999998
Q ss_pred ccc
Q 002972 307 TRN 309 (862)
Q Consensus 307 TR~ 309 (862)
--.
T Consensus 153 GD~ 155 (205)
T PF02562_consen 153 GDP 155 (205)
T ss_dssp E--
T ss_pred cCc
Confidence 543
No 176
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.26 E-value=0.33 Score=50.38 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|+|||||++.++.-..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35899999999999999999987643
No 177
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.26 E-value=0.16 Score=53.76 Aligned_cols=23 Identities=35% Similarity=0.317 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
+..|+|++|+|||+||..++...
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999998754
No 178
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.25 E-value=0.062 Score=65.96 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
...+.++|++|+|||+||+.++....
T Consensus 488 ~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998774
No 179
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.22 E-value=0.066 Score=59.72 Aligned_cols=28 Identities=32% Similarity=0.331 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCc
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPPERF 208 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~~~F 208 (862)
.-+.|+|.+|+|||||++.+++....+.
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~~~~ 161 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVAANH 161 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 4568999999999999999988765443
No 180
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.22 E-value=0.17 Score=50.20 Aligned_cols=41 Identities=27% Similarity=0.360 Sum_probs=30.9
Q ss_pred ccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 164 SSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 164 ~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
+.-.+.+..++..+.-+..+.++|..|+||+++|..+++..
T Consensus 3 ~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 3 EEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHH
Confidence 34456666667665446788999999999999999998764
No 181
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.22 E-value=0.36 Score=49.79 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|+|||||++.++-...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999997643
No 182
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.15 Score=58.05 Aligned_cols=141 Identities=21% Similarity=0.281 Sum_probs=75.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHhccccccCCCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDEN 258 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~lg~~~~~~~~~ 258 (862)
+...+.+.|++|+|||+||..++.. ..|+. +.+ | |.+. +. | -.+.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPF----vKi---i-------Spe~--------mi------G-----~sEs 581 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS--SDFPF----VKI---I-------SPED--------MI------G-----LSES 581 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh--cCCCe----EEE---e-------ChHH--------cc------C-----ccHH
Confidence 3667889999999999999999875 35662 111 2 1111 10 0 0000
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHhhc----------------cCCCce--EEEEccchhhhhhccccc
Q 002972 259 SDLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKL----------------YDNDCK--YLVTTRNEAVYEITEAEK 320 (862)
Q Consensus 259 ~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~~~~~l~~~----------------~~~gsr--ILvTTR~~~va~~~~~~~ 320 (862)
.-...+...+.+.-+..--.||+||+...-+|-.+.|- .++|-| |+-||....+...|+...
T Consensus 582 aKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~ 661 (744)
T KOG0741|consen 582 AKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD 661 (744)
T ss_pred HHHHHHHHHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH
Confidence 11112233334444556678999999766555332221 134555 556777777777665321
Q ss_pred -------c-cCCh-hhHHHHHHHHhhhcccccCcchHHHHHHHHhhh
Q 002972 321 -------V-ELSK-DDIMEISKSILLYHSLLAEEELPAAAESLLERC 358 (862)
Q Consensus 321 -------~-~L~~-~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~c 358 (862)
+ .++. ++..+.+... +...+...+.++.+...+|
T Consensus 662 ~F~~~i~Vpnl~~~~~~~~vl~~~----n~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 662 CFSSTIHVPNLTTGEQLLEVLEEL----NIFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred hhhheeecCccCchHHHHHHHHHc----cCCCcchhHHHHHHHhccc
Confidence 2 2443 4444443322 1122444455666666666
No 183
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.18 E-value=0.049 Score=60.31 Aligned_cols=30 Identities=23% Similarity=0.088 Sum_probs=26.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCc
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPPERF 208 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F 208 (862)
.+..++|||++|+|||.+|+++++.....|
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~~ 176 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIEP 176 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCCe
Confidence 478999999999999999999999876543
No 184
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.17 E-value=0.32 Score=53.65 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 166 KSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 166 ~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..+.+...+..+.-+..+.++|+.|+||+++|..+++..
T Consensus 12 ~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~L 50 (319)
T PRK08769 12 AYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHV 50 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHH
Confidence 344555555555446789999999999999999998754
No 185
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.17 E-value=0.24 Score=49.86 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
+.++|+|.|++|+||||+|+.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999998764
No 186
>PRK04296 thymidine kinase; Provisional
Probab=95.14 E-value=0.041 Score=56.12 Aligned_cols=113 Identities=18% Similarity=0.087 Sum_probs=60.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHhccccccCCCCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDENSD 260 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~lg~~~~~~~~~~~ 260 (862)
.++.|+|..|.||||+|..++.+...+.. .++.+.-. . ........+.+. +|.. -.......
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~-~v~i~k~~--~-------d~~~~~~~i~~~-------lg~~-~~~~~~~~ 64 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGM-KVLVFKPA--I-------DDRYGEGKVVSR-------IGLS-REAIPVSS 64 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCC-eEEEEecc--c-------cccccCCcEecC-------CCCc-ccceEeCC
Confidence 47889999999999999999887643321 23222100 0 000001111111 1210 00001123
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEcCCCc--hHHHHHhhc-cCCCceEEEEccchhh
Q 002972 261 LEYLCCLLQEALYGKSILILLDDVWEQ--DIVERFAKL-YDNDCKYLVTTRNEAV 312 (862)
Q Consensus 261 ~~~l~~~l~~~L~~kr~LLVLDDV~~~--~~~~~l~~~-~~~gsrILvTTR~~~v 312 (862)
.+++...+.+ ..++.-+||+|.+.-. +++..+... -+.|..|++|.++.+.
T Consensus 65 ~~~~~~~~~~-~~~~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 65 DTDIFELIEE-EGEKIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDTDF 118 (190)
T ss_pred hHHHHHHHHh-hCCCCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 4455555555 3345568999998643 434444443 4678899999988653
No 187
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.14 E-value=0.22 Score=51.93 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=35.5
Q ss_pred HHHHHHhcCCCeEEEEEcCCCc-------hHHHHHhhcc-CCCceEEEEccchhhhhhccc
Q 002972 266 CLLQEALYGKSILILLDDVWEQ-------DIVERFAKLY-DNDCKYLVTTRNEAVYEITEA 318 (862)
Q Consensus 266 ~~l~~~L~~kr~LLVLDDV~~~-------~~~~~l~~~~-~~gsrILvTTR~~~va~~~~~ 318 (862)
-.+.+.|.-++=+||+|..-+. ..|+.+...- ..+-.+|+.|.+-.+...++.
T Consensus 150 iaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cd 210 (252)
T COG1124 150 IAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCD 210 (252)
T ss_pred HHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhh
Confidence 3466777888889999987543 3355444322 345678899999887775543
No 188
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.13 E-value=0.013 Score=56.92 Aligned_cols=30 Identities=30% Similarity=0.533 Sum_probs=25.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCC-cc
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPER-FV 209 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~-F~ 209 (862)
..-|+|.|++|+||||+++.+++..+.+ |.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~k 35 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYK 35 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCce
Confidence 4568999999999999999999877644 43
No 189
>PRK14974 cell division protein FtsY; Provisional
Probab=95.13 E-value=0.24 Score=54.98 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+.+|.++|++|+||||++..++....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~ 165 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK 165 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999998888876554
No 190
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.12 E-value=0.041 Score=56.39 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
+++|.++|+.|+||||.+.+++...+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~ 26 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK 26 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh
Confidence 47999999999999998888876654
No 191
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.12 E-value=0.26 Score=49.61 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q 002972 180 HQVILIVGLSGIGKSCLARQVAS 202 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~ 202 (862)
-.+++|+|+.|+|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 46899999999999999999864
No 192
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.08 E-value=0.48 Score=49.66 Aligned_cols=51 Identities=22% Similarity=0.390 Sum_probs=38.9
Q ss_pred cCCCcCcc---HHHHHHHHHhcCC-----CceEEEEEcCCCCCHHHHHHHHHhCCCCCc
Q 002972 158 EQGYPISS---KSKFLRKLLEQEE-----THQVILIVGLSGIGKSCLARQVASDPPERF 208 (862)
Q Consensus 158 ~~~~g~~~---~~~~l~~LL~~~~-----~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F 208 (862)
...+|.++ +.++|.+.|++.. .++-|..+|++|.|||-+|+++++..+.-|
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~ 179 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL 179 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce
Confidence 34456553 5677888887642 288999999999999999999999876443
No 193
>PRK06696 uridine kinase; Validated
Probab=95.08 E-value=0.027 Score=59.01 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=25.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 178 ETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 178 ~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
+.+.+|+|.|.+|+||||||+.++....
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999999998764
No 194
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.24 Score=57.61 Aligned_cols=145 Identities=20% Similarity=0.324 Sum_probs=78.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHhccccccCCCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDENS 259 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~lg~~~~~~~~~~ 259 (862)
+.=|.++|++|+|||-||++|+|.-+-.|- .+ --++.. .... | .
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFi------sV-----------KGPELl----NkYV------G---------E 588 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFI------SV-----------KGPELL----NKYV------G---------E 588 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceE------ee-----------cCHHHH----HHHh------h---------h
Confidence 556889999999999999999998776652 22 122221 1111 1 1
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEcCCCc-------------hHHHHHhhccC-----CCceEEEEccchhhhh--hcccc
Q 002972 260 DLEYLCCLLQEALYGKSILILLDDVWEQ-------------DIVERFAKLYD-----NDCKYLVTTRNEAVYE--ITEAE 319 (862)
Q Consensus 260 ~~~~l~~~l~~~L~~kr~LLVLDDV~~~-------------~~~~~l~~~~~-----~gsrILvTTR~~~va~--~~~~~ 319 (862)
+.......+.+.-..-+|.|.||.++.. ..++.|+.-+. .|--||-.|-.+++.. +..+.
T Consensus 589 SErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPG 668 (802)
T KOG0733|consen 589 SERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPG 668 (802)
T ss_pred HHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCC
Confidence 1222233334444457899999999643 12333332121 2445666666555543 22332
Q ss_pred c------ccC-ChhhHHHHHHHHhhhcc--cccCcchHHHHHHHHhhhCCch
Q 002972 320 K------VEL-SKDDIMEISKSILLYHS--LLAEEELPAAAESLLERCGHHP 362 (862)
Q Consensus 320 ~------~~L-~~~ea~~Lf~~~~~~~~--~~~~~~l~~~~~~Iv~~cgGLP 362 (862)
+ ++| +.+|-..+++.....+. ...+-++.+++.. .+|.|.-
T Consensus 669 RlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 669 RLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred ccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 2 255 45566677776665322 2233455555542 3555553
No 195
>PRK04132 replication factor C small subunit; Provisional
Probab=95.06 E-value=0.37 Score=59.55 Aligned_cols=144 Identities=13% Similarity=0.079 Sum_probs=78.4
Q ss_pred CCCCCHHHHHHHHHhCCC-CCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHhccccccCCCCCCHHHHHH
Q 002972 188 LSGIGKSCLARQVASDPP-ERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDENSDLEYLCC 266 (862)
Q Consensus 188 ~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~ 266 (862)
+.++||||+|..++++.- ..+...++.+|. +...... ..+.+.+.+.... +.
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNA-----------Sd~rgid-~IR~iIk~~a~~~-----~~---------- 626 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNA-----------SDERGIN-VIREKVKEFARTK-----PI---------- 626 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeC-----------CCcccHH-HHHHHHHHHHhcC-----Cc----------
Confidence 779999999999999863 234334444443 2111111 2222222111100 00
Q ss_pred HHHHHhcCCCeEEEEEcCCCch--HHHHHhhcc---CCCceEEEEccch-hhhh----hcccccc-cCChhhHHHHHHHH
Q 002972 267 LLQEALYGKSILILLDDVWEQD--IVERFAKLY---DNDCKYLVTTRNE-AVYE----ITEAEKV-ELSKDDIMEISKSI 335 (862)
Q Consensus 267 ~l~~~L~~kr~LLVLDDV~~~~--~~~~l~~~~---~~gsrILvTTR~~-~va~----~~~~~~~-~L~~~ea~~Lf~~~ 335 (862)
-..+.-++|||+++... ..+.|.... +..+++|++|-+. .+.. .|....+ +++.++-...+...
T Consensus 627 -----~~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 627 -----GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred -----CCCCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHH
Confidence 01245799999998763 566666444 3566766665544 3322 1222222 67777777666665
Q ss_pred hhhcccccCcchHHHHHHHHhhhCCchHHHH
Q 002972 336 LLYHSLLAEEELPAAAESLLERCGHHPLTVA 366 (862)
Q Consensus 336 ~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~ 366 (862)
+...+...+ ++....|++.|+|-+-...
T Consensus 702 ~~~Egi~i~---~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 702 AENEGLELT---EEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred HHhcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 543322111 4577889999999875443
No 196
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.04 E-value=0.018 Score=54.06 Aligned_cols=22 Identities=36% Similarity=0.598 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 002972 183 ILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 183 I~I~G~gGiGKTtLA~~v~~~~ 204 (862)
|+|.|.+|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999874
No 197
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.04 E-value=0.21 Score=51.25 Aligned_cols=25 Identities=36% Similarity=0.615 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-.+++|+|..|.|||||.+.++...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4699999999999999999998763
No 198
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.04 E-value=0.21 Score=58.40 Aligned_cols=27 Identities=37% Similarity=0.530 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
++-|.++|++|+|||.+|+.+++....
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~~ 285 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQL 285 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 567899999999999999999987653
No 199
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.05 Score=58.45 Aligned_cols=26 Identities=31% Similarity=0.583 Sum_probs=24.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.++|.++|++|.|||+|.++++++..
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLS 202 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhhe
Confidence 68999999999999999999999875
No 200
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.03 E-value=0.032 Score=54.31 Aligned_cols=24 Identities=46% Similarity=0.656 Sum_probs=22.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
+|.|.|++|+||||+|+.++++..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 689999999999999999999875
No 201
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.03 E-value=0.14 Score=56.52 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=31.3
Q ss_pred CcCccHHHHHHHHHhcCCC-ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 161 YPISSKSKFLRKLLEQEET-HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 161 ~g~~~~~~~l~~LL~~~~~-~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
++.+.....+.......++ ...+.++|++|+||||+|..+++..-
T Consensus 4 ~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 4 VPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred ccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHh
Confidence 3444444455444443333 44599999999999999999998765
No 202
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.01 E-value=0.16 Score=54.74 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=28.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEee
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 217 (862)
-.++.|.|.+|+||||++.+++.....+....++|+++
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 45889999999999999999987764332344655544
No 203
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.00 E-value=0.22 Score=48.86 Aligned_cols=112 Identities=25% Similarity=0.286 Sum_probs=59.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHhccccccCCCCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDENSD 260 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~lg~~~~~~~~~~~ 260 (862)
.+++|+|..|.|||||.+.++..... . .+.++++-... .. ......... .+.. . ..+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~-~-~G~i~~~~~~~--------~~-~~~~~~~~~-------i~~~---~-qlS~ 83 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKP-T-SGEILIDGKDI--------AK-LPLEELRRR-------IGYV---P-QLSG 83 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC-C-ccEEEECCEEc--------cc-CCHHHHHhc-------eEEE---e-eCCH
Confidence 69999999999999999999886542 2 23333332110 00 001111111 1110 0 0122
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEcCCCc---hHHHH----HhhccCCCceEEEEccchhhhh
Q 002972 261 LEYLCCLLQEALYGKSILILLDDVWEQ---DIVER----FAKLYDNDCKYLVTTRNEAVYE 314 (862)
Q Consensus 261 ~~~l~~~l~~~L~~kr~LLVLDDV~~~---~~~~~----l~~~~~~gsrILvTTR~~~va~ 314 (862)
-+...-.+...+....=++++|+.... ..... +......+..++++|.+.....
T Consensus 84 G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 84 GQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 223333455556666789999998633 22222 2222233577888888876544
No 204
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.99 E-value=0.25 Score=54.60 Aligned_cols=163 Identities=13% Similarity=0.154 Sum_probs=85.8
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCC-----CccCceEEEeeeeeeecccccCCCchHHHHHHHHH
Q 002972 167 SKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPE-----RFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKI 241 (862)
Q Consensus 167 ~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~-----~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i 241 (862)
-+.+...+..+.-...+.++|+.|+||+++|..++...-- .-+|+. |.+ -+.+
T Consensus 11 ~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~-------------C~s---------C~~~ 68 (325)
T PRK06871 11 YQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQ-------------CHS---------CHLF 68 (325)
T ss_pred HHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCC-------------CHH---------HHHH
Confidence 3445555555544678889999999999999999875421 111211 100 0000
Q ss_pred HHHHHHhcccc------ccCCCCCCHHHHHHHHHHHh-----cCCCeEEEEEcCCCc--hHHHHHhhcc---CCCceEEE
Q 002972 242 SKFLVQIGFWK------KIKDENSDLEYLCCLLQEAL-----YGKSILILLDDVWEQ--DIVERFAKLY---DNDCKYLV 305 (862)
Q Consensus 242 ~~~l~~lg~~~------~~~~~~~~~~~l~~~l~~~L-----~~kr~LLVLDDV~~~--~~~~~l~~~~---~~gsrILv 305 (862)
.. |.+. ......-.+++..+ +.+.+ .+++=++|+|+++.. ...+.+...+ ++++.+|+
T Consensus 69 ----~~-g~HPD~~~i~p~~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL 142 (325)
T PRK06871 69 ----QA-GNHPDFHILEPIDNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLL 142 (325)
T ss_pred ----hc-CCCCCEEEEccccCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEE
Confidence 00 1000 00001113333332 22222 356668889999866 3455555444 45666666
Q ss_pred Eccch-hhhhh----cccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHH
Q 002972 306 TTRNE-AVYEI----TEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTV 365 (862)
Q Consensus 306 TTR~~-~va~~----~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI 365 (862)
+|.+. .+... +....+ ++++++..+.+.+... .+ ...+...+..++|.|+..
T Consensus 143 ~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~------~~--~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 143 QADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS------AE--ISEILTALRINYGRPLLA 200 (325)
T ss_pred EECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc------cC--hHHHHHHHHHcCCCHHHH
Confidence 66554 34322 222223 7788887766554321 11 123556788899999633
No 205
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.98 E-value=0.091 Score=52.50 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 002972 182 VILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
++.|.|.+|+|||++|.+++..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~ 22 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE 22 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 3679999999999999999876
No 206
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.98 E-value=0.56 Score=48.08 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|.|||||.+.++....
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46999999999999999999987653
No 207
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.97 E-value=0.19 Score=51.65 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 002972 181 QVILIVGLSGIGKSCLARQVAS 202 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~ 202 (862)
++++|+|+.|.|||||.+.+.-
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999998874
No 208
>PRK10867 signal recognition particle protein; Provisional
Probab=94.97 E-value=0.11 Score=59.67 Aligned_cols=28 Identities=36% Similarity=0.523 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
.+.+|.++|.+|+||||.|..++...+.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~ 126 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKK 126 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3789999999999999988888775543
No 209
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.96 E-value=0.2 Score=50.25 Aligned_cols=141 Identities=17% Similarity=0.181 Sum_probs=79.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCC-----c------------------cCceEEEeeeeeeeccccc-C-----CC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPER-----F------------------VGGAVELGFGQWCSRAACN-G-----SK 230 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~-----F------------------~~~~~~~~~~~w~~~~~~~-~-----s~ 230 (862)
-..+-++|++|.|||||.+.+|...+.. | .-+++|-|++.-....... + -.
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~ 107 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI 107 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc
Confidence 4588999999999999999999765311 1 0123333332211000000 0 00
Q ss_pred chHHHHHHHHHHHHHHHhcccccc---CCCCCCHHHHHHHHHHHhcCCCeEEEEEc----CCCchHHHHHh---hccCCC
Q 002972 231 SDYQKRLARKISKFLVQIGFWKKI---KDENSDLEYLCCLLQEALYGKSILILLDD----VWEQDIVERFA---KLYDND 300 (862)
Q Consensus 231 ~~~~~~l~~~i~~~l~~lg~~~~~---~~~~~~~~~l~~~l~~~L~~kr~LLVLDD----V~~~~~~~~l~---~~~~~g 300 (862)
......+-+.....|...|..... +..-+.-++..-.|.+.+-+++-+|+-|. ++....|+-+. .....|
T Consensus 108 G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~G 187 (223)
T COG2884 108 GKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLG 187 (223)
T ss_pred CCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcC
Confidence 111233444455555544432222 22223344555567778889999999995 45555565443 222469
Q ss_pred ceEEEEccchhhhhhccccc
Q 002972 301 CKYLVTTRNEAVYEITEAEK 320 (862)
Q Consensus 301 srILvTTR~~~va~~~~~~~ 320 (862)
..||++|.+.++...+....
T Consensus 188 tTVl~ATHd~~lv~~~~~rv 207 (223)
T COG2884 188 TTVLMATHDLELVNRMRHRV 207 (223)
T ss_pred cEEEEEeccHHHHHhccCcE
Confidence 99999999998877665443
No 210
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.95 E-value=0.24 Score=52.60 Aligned_cols=128 Identities=19% Similarity=0.169 Sum_probs=72.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHhcccccc----C
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKI----K 255 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~lg~~~~~----~ 255 (862)
-.+++|+|.+|+|||||++.+..-..... +.++++-.... ... .....+.+.+.|...|..... +
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt~--G~i~f~g~~i~-------~~~--~~~~~~~v~elL~~Vgl~~~~~~ryP 107 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPTS--GEILFEGKDIT-------KLS--KEERRERVLELLEKVGLPEEFLYRYP 107 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCCC--ceEEEcCcchh-------hcc--hhHHHHHHHHHHHHhCCCHHHhhcCC
Confidence 46999999999999999999998665321 22222211110 000 222334455555555532111 1
Q ss_pred CCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCchH-------HHHHhhcc-CCCceEEEEccchhhhhhccc
Q 002972 256 DENSDLEYLCCLLQEALYGKSILILLDDVWEQDI-------VERFAKLY-DNDCKYLVTTRNEAVYEITEA 318 (862)
Q Consensus 256 ~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~~-------~~~l~~~~-~~gsrILvTTR~~~va~~~~~ 318 (862)
-+.+.-+...-.+.+.|.-++=++|.|..-+.-+ ++.+...- ..|-..+..|.+-.++..+..
T Consensus 108 helSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 108 HELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred cccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 1122222233457778888999999998754422 12222211 347788888898888776554
No 211
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.95 E-value=0.35 Score=50.16 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|.|||||.+.++-...
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999987653
No 212
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.92 E-value=0.09 Score=52.99 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=24.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEee
Q 002972 182 VILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 217 (862)
++.|.|.+|+|||+||.+++...... ...++|+++
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~-g~~v~~~s~ 35 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR-GEPGLYVTL 35 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC-CCcEEEEEC
Confidence 36799999999999999987654321 234555544
No 213
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.91 E-value=0.37 Score=48.42 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|.|..|.|||||++.++-...
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 35899999999999999999987654
No 214
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.91 E-value=0.58 Score=48.07 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|.|||||.+.++-...
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35899999999999999999987543
No 215
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.91 E-value=0.08 Score=66.14 Aligned_cols=46 Identities=22% Similarity=0.218 Sum_probs=31.6
Q ss_pred CCCcCccHHHHHHHHHh-------cC-CCceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 159 QGYPISSKSKFLRKLLE-------QE-ETHQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 159 ~~~g~~~~~~~l~~LL~-------~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..+|.++-.+.+...+. .. ....++.++|++|+|||.||+.+++..
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 44566655555544432 11 124578999999999999999998765
No 216
>PRK04328 hypothetical protein; Provisional
Probab=94.90 E-value=0.22 Score=53.16 Aligned_cols=48 Identities=21% Similarity=0.240 Sum_probs=32.2
Q ss_pred HHHHHHhcC-CCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEee
Q 002972 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (862)
Q Consensus 169 ~l~~LL~~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 217 (862)
-+..+|..+ +.-.++.|.|.+|+|||+||.++......+ ...++|+++
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~-ge~~lyis~ 59 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGVYVAL 59 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEe
Confidence 345555543 236799999999999999999987653222 234566555
No 217
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=94.87 E-value=0.031 Score=62.04 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=36.5
Q ss_pred CCCcCccHHHHHHHHHhc-----CCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 159 QGYPISSKSKFLRKLLEQ-----EETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 159 ~~~g~~~~~~~l~~LL~~-----~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..+|.++..+.+...+.. +...+++.++|++|+||||||..+++...
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 567888766666655543 22368999999999999999999998765
No 218
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=94.86 E-value=0.57 Score=52.19 Aligned_cols=165 Identities=13% Similarity=0.149 Sum_probs=86.6
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCC-----CccCceEEEeeeeeeecccccCCCchHHHHHHHH
Q 002972 166 KSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPE-----RFVGGAVELGFGQWCSRAACNGSKSDYQKRLARK 240 (862)
Q Consensus 166 ~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~-----~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~ 240 (862)
.-+.+...+..+.-..-+.++|+.|+||+++|..++...-- .-+|+. |.+ -+.
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~-------------C~s---------C~~ 67 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGH-------------CRG---------CQL 67 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCC-------------CHH---------HHH
Confidence 34455556655555778999999999999999999875421 112221 110 000
Q ss_pred HHHHHHHhccccc----cCC---CCCCHHHHHHHHHHHh-----cCCCeEEEEEcCCCc--hHHHHHhhcc---CCCceE
Q 002972 241 ISKFLVQIGFWKK----IKD---ENSDLEYLCCLLQEAL-----YGKSILILLDDVWEQ--DIVERFAKLY---DNDCKY 303 (862)
Q Consensus 241 i~~~l~~lg~~~~----~~~---~~~~~~~l~~~l~~~L-----~~kr~LLVLDDV~~~--~~~~~l~~~~---~~gsrI 303 (862)
+ . .|.+.+ .+. ..-.+++..+ +.+.+ .+++=++|+|+++.. +.-+.|...+ ++++.+
T Consensus 68 ~----~-~g~HPD~~~i~p~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~f 141 (334)
T PRK07993 68 M----Q-AGTHPDYYTLTPEKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWF 141 (334)
T ss_pred H----H-cCCCCCEEEEecccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEE
Confidence 0 0 010000 000 1113333333 22222 356678999999866 3455555443 456665
Q ss_pred EEEccc-hhhhhh----cccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHH
Q 002972 304 LVTTRN-EAVYEI----TEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVA 366 (862)
Q Consensus 304 LvTTR~-~~va~~----~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~ 366 (862)
|++|.+ ..+... +....+ +++.+++.+.+....+ .+ .+.+..++..++|.|....
T Consensus 142 iL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~-----~~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 142 FLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREVT-----MS---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred EEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHccC-----CC---HHHHHHHHHHcCCCHHHHH
Confidence 555554 434432 222222 5677776665433211 11 2346778999999996443
No 219
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.78 Score=54.88 Aligned_cols=59 Identities=22% Similarity=0.277 Sum_probs=38.3
Q ss_pred CccccccccCCCcCccHHHHHHHHHh----------cC-CCceEEEEEcCCCCCHHHHHHHHHhCCCCCc
Q 002972 150 PTRLKVKAEQGYPISSKSKFLRKLLE----------QE-ETHQVILIVGLSGIGKSCLARQVASDPPERF 208 (862)
Q Consensus 150 ~~~~~~~~~~~~g~~~~~~~l~~LL~----------~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F 208 (862)
|....+.-.+.-|.++-...|..-+. .+ ...+=|.++|++|.|||-||++|+-...-.|
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~F 733 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNF 733 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeE
Confidence 44444555555577766655544322 21 1245688999999999999999998754333
No 220
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.84 E-value=0.068 Score=53.41 Aligned_cols=24 Identities=46% Similarity=0.657 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
++.++|++|+||||++..++....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~ 25 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999987654
No 221
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.83 E-value=0.47 Score=47.45 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|.|||||.+.++....
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999987654
No 222
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.83 E-value=0.28 Score=56.49 Aligned_cols=28 Identities=36% Similarity=0.490 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
.+.+|.++|.+|+||||+|..++...+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~ 121 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKK 121 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4689999999999999999999876653
No 223
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.79 E-value=0.023 Score=58.15 Aligned_cols=25 Identities=40% Similarity=0.509 Sum_probs=22.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
||+|.|.+|+||||+|+.+......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 7999999999999999999987663
No 224
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.78 E-value=0.29 Score=47.46 Aligned_cols=101 Identities=21% Similarity=0.220 Sum_probs=55.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHhccccccCCCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDENS 259 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~lg~~~~~~~~~~ 259 (862)
-.+++|+|..|.|||||++.++..... ..+.++++-...+.. . .+ .+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~~~~~i~~--~--~~---------------------------lS 72 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEP--DEGIVTWGSTVKIGY--F--EQ---------------------------LS 72 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCeEEEEE--E--cc---------------------------CC
Confidence 469999999999999999999876542 233344332111100 0 00 11
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEcCCCc---hHHHHHhhccC-CCceEEEEccchhhh
Q 002972 260 DLEYLCCLLQEALYGKSILILLDDVWEQ---DIVERFAKLYD-NDCKYLVTTRNEAVY 313 (862)
Q Consensus 260 ~~~~l~~~l~~~L~~kr~LLVLDDV~~~---~~~~~l~~~~~-~gsrILvTTR~~~va 313 (862)
.-+...-.+...+..++-++++|+.... ...+.+...+. -+..||++|.+.+..
T Consensus 73 ~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~~~~ 130 (144)
T cd03221 73 GGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFL 130 (144)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCHHHH
Confidence 1112222345555667779999987533 33333322221 145788888776544
No 225
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.78 E-value=0.58 Score=47.65 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
-.+++|+|..|.|||||.+.++-.
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999964
No 226
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.78 E-value=0.49 Score=49.49 Aligned_cols=26 Identities=38% Similarity=0.483 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|.|..|+|||||++.++....
T Consensus 48 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 73 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLRLLAGIYP 73 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999997654
No 227
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.73 E-value=0.29 Score=48.93 Aligned_cols=26 Identities=38% Similarity=0.455 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|.|||||.+.++....
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC
Confidence 45899999999999999999997654
No 228
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.69 E-value=0.57 Score=48.58 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-.+++|+|..|.|||||.+.++.-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc
Confidence 3589999999999999999998754
No 229
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.68 E-value=0.47 Score=47.13 Aligned_cols=119 Identities=20% Similarity=0.204 Sum_probs=61.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeee---eeeecccccCCCchHHHHHHHHHHHHHHHhccccccCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFG---QWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKD 256 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~---~w~~~~~~~~s~~~~~~~l~~~i~~~l~~lg~~~~~~~ 256 (862)
-.+++|+|..|.|||||++.++...... .+.++++-. ..++.. .......+.+.+.- + ...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~~~~~i~~~~q~-----~~~~~~tv~~nl~~-----~----~~~ 90 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWG--SGRIGMPEGEDLLFLPQR-----PYLPLGTLREQLIY-----P----WDD 90 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCCceEEEECCC-----CccccccHHHHhhc-----c----CCC
Confidence 4589999999999999999998765421 233333211 112111 00111123333210 0 111
Q ss_pred CCCCHHHHHHHHHHHhcCCCeEEEEEcCCCc---hHHHHHhhcc-CCCceEEEEccchhhhh
Q 002972 257 ENSDLEYLCCLLQEALYGKSILILLDDVWEQ---DIVERFAKLY-DNDCKYLVTTRNEAVYE 314 (862)
Q Consensus 257 ~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~---~~~~~l~~~~-~~gsrILvTTR~~~va~ 314 (862)
..+.-+...-.+...+-.++=++++|+.-.. ...+.+...+ .-+..||++|.+.....
T Consensus 91 ~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~~ 152 (166)
T cd03223 91 VLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLWK 152 (166)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHHh
Confidence 2222333344455666677778899987533 2222222211 11467888888876543
No 230
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.082 Score=62.19 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
..-|.|.|..|+|||+||+++++....
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k 457 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSK 457 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhcc
Confidence 567889999999999999999987763
No 231
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=94.66 E-value=0.5 Score=48.32 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|.|||||.+.++....
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (198)
T TIGR01189 26 GEALQVTGPNGIGKTTLLRILAGLLR 51 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46999999999999999999987643
No 232
>PRK07667 uridine kinase; Provisional
Probab=94.59 E-value=0.052 Score=55.49 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=25.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 177 EETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 177 ~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+...+|+|.|.+|+||||+|..+.....
T Consensus 14 ~~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 14 KENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44568999999999999999999998664
No 233
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.29 Score=57.54 Aligned_cols=50 Identities=22% Similarity=0.304 Sum_probs=36.8
Q ss_pred CCCcCccHHHHHHHHHhc-----------C-CCceEEEEEcCCCCCHHHHHHHHHhCCCCCc
Q 002972 159 QGYPISSKSKFLRKLLEQ-----------E-ETHQVILIVGLSGIGKSCLARQVASDPPERF 208 (862)
Q Consensus 159 ~~~g~~~~~~~l~~LL~~-----------~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F 208 (862)
..-|.++...++++...- + ..++=|..+|++|+|||++|+++++.-+-.|
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nF 496 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNF 496 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCe
Confidence 333677777777654431 1 2377899999999999999999999876555
No 234
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.57 E-value=0.036 Score=58.10 Aligned_cols=126 Identities=22% Similarity=0.303 Sum_probs=67.1
Q ss_pred HHHHHhcC-CCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHH----
Q 002972 170 LRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKF---- 244 (862)
Q Consensus 170 l~~LL~~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~---- 244 (862)
+..+|..+ +...++.|.|.+|+|||+||.+++.....++...++|+.+. .....+.+.+...
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~e-------------e~~~~l~~~~~s~g~d~ 74 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFE-------------EPPEELIENMKSFGWDL 74 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESS-------------S-HHHHHHHHHTTTS-H
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEec-------------CCHHHHHHHHHHcCCcH
Confidence 44555432 23679999999999999999998765433323445655542 2223333333211
Q ss_pred ---HHH--hccccccCC----CCCCHHHHHHHHHHHhcC-CCeEEEEEcCCCc------hHH----HHHhhcc-CCCceE
Q 002972 245 ---LVQ--IGFWKKIKD----ENSDLEYLCCLLQEALYG-KSILILLDDVWEQ------DIV----ERFAKLY-DNDCKY 303 (862)
Q Consensus 245 ---l~~--lg~~~~~~~----~~~~~~~l~~~l~~~L~~-kr~LLVLDDV~~~------~~~----~~l~~~~-~~gsrI 303 (862)
... +...+.... ...+.+.+...+.+.++. +...+|+|.+... ... ..+...+ ..|+.+
T Consensus 75 ~~~~~~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~ 154 (226)
T PF06745_consen 75 EEYEDSGKLKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTT 154 (226)
T ss_dssp HHHHHTTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEE
T ss_pred HHHhhcCCEEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEE
Confidence 100 000000000 034777777777777665 5578999987422 222 2222222 356777
Q ss_pred EEEcc
Q 002972 304 LVTTR 308 (862)
Q Consensus 304 LvTTR 308 (862)
|+|+.
T Consensus 155 llt~~ 159 (226)
T PF06745_consen 155 LLTSE 159 (226)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 77766
No 235
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.56 E-value=0.4 Score=49.28 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|.|||||.+.++....
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45999999999999999999987643
No 236
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.55 E-value=0.76 Score=47.39 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|.|||||++.++....
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 28 GEALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46999999999999999999987643
No 237
>PRK03839 putative kinase; Provisional
Probab=94.55 E-value=0.026 Score=56.84 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.|.|.|++|+||||+|+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999864
No 238
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.54 E-value=0.03 Score=53.79 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
+|.+.|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 688999999999999999986653
No 239
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.51 E-value=0.032 Score=57.66 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
...+|+|.|.+|+||||||+.++...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999876
No 240
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.51 E-value=0.7 Score=48.08 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-.+++|+|..|.|||||.+.++-..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4699999999999999999998754
No 241
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.50 E-value=0.83 Score=46.61 Aligned_cols=26 Identities=35% Similarity=0.441 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|.|||||++.++....
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35999999999999999999987654
No 242
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.49 E-value=0.1 Score=52.57 Aligned_cols=24 Identities=46% Similarity=0.630 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.|.|.|.+|+||||+|+.+++...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999843
No 243
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.48 E-value=0.16 Score=54.33 Aligned_cols=49 Identities=33% Similarity=0.324 Sum_probs=34.6
Q ss_pred HHHHHHhcC-CCceEEEEEcCCCCCHHHHHHHHHhCCC-----CCccCceEEEee
Q 002972 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPP-----ERFVGGAVELGF 217 (862)
Q Consensus 169 ~l~~LL~~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~-----~~F~~~~~~~~~ 217 (862)
.+..+|.++ ..-.++=|+|.+|+|||+|+.+++-... ......++|+|-
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidT 80 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDT 80 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEES
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeC
Confidence 566677543 2256999999999999999998874432 223566888764
No 244
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.46 E-value=0.52 Score=46.99 Aligned_cols=26 Identities=35% Similarity=0.350 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|.|||||.+.++.-..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 46999999999999999999998654
No 245
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=94.46 E-value=0.93 Score=47.25 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|.|||||++.++.-..
T Consensus 34 Ge~~~l~G~nGsGKSTLl~~i~G~~~ 59 (224)
T TIGR02324 34 GECVALSGPSGAGKSTLLKSLYANYL 59 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35999999999999999999987654
No 246
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=0.26 Score=51.50 Aligned_cols=27 Identities=33% Similarity=0.465 Sum_probs=24.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
++=|.++|++|.|||-+|++|+|+-..
T Consensus 211 pkgvllygppgtgktl~aravanrtda 237 (435)
T KOG0729|consen 211 PKGVLLYGPPGTGKTLCARAVANRTDA 237 (435)
T ss_pred CCceEEeCCCCCchhHHHHHHhcccCc
Confidence 677899999999999999999998643
No 247
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.44 E-value=0.12 Score=56.90 Aligned_cols=99 Identities=19% Similarity=0.120 Sum_probs=55.1
Q ss_pred HHHHHHh-cC-CCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHH
Q 002972 169 FLRKLLE-QE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLV 246 (862)
Q Consensus 169 ~l~~LL~-~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~ 246 (862)
.+..+|. .+ +.-+++-|+|++|+||||||.+++...... ...++|++...- ... ..++.+.-.+.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~-g~~v~yId~E~~-----------~~~-~~a~~lGvd~~ 108 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKA-GGTAAFIDAEHA-----------LDP-VYARKLGVDID 108 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEcccch-----------hHH-HHHHHcCCCHH
Confidence 4566665 32 346799999999999999999987654322 244666665321 111 11222210011
Q ss_pred HhccccccCCCCCCHHHHHHHHHHHhc-CCCeEEEEEcCC
Q 002972 247 QIGFWKKIKDENSDLEYLCCLLQEALY-GKSILILLDDVW 285 (862)
Q Consensus 247 ~lg~~~~~~~~~~~~~~l~~~l~~~L~-~kr~LLVLDDV~ 285 (862)
.+- ...+.+.++....+....+ +.--++|+|-|.
T Consensus 109 ~l~-----v~~p~~~eq~l~~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 109 NLL-----VSQPDTGEQALEIAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HeE-----EecCCCHHHHHHHHHHHhhccCCcEEEEcchh
Confidence 111 1122345556666655553 456789999875
No 248
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.42 E-value=0.13 Score=58.86 Aligned_cols=27 Identities=37% Similarity=0.482 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+.++.++|.+|+||||.|..++....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367999999999999999988887643
No 249
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.41 E-value=0.77 Score=47.78 Aligned_cols=26 Identities=38% Similarity=0.489 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|+|||||++.++.-..
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35899999999999999999987643
No 250
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=94.41 E-value=0.8 Score=50.30 Aligned_cols=49 Identities=16% Similarity=0.161 Sum_probs=32.5
Q ss_pred HHHHHHhcCCCeEEEEEcCCCc-------hHHHHHhhccCCCceEEEEccchhhhh
Q 002972 266 CLLQEALYGKSILILLDDVWEQ-------DIVERFAKLYDNDCKYLVTTRNEAVYE 314 (862)
Q Consensus 266 ~~l~~~L~~kr~LLVLDDV~~~-------~~~~~l~~~~~~gsrILvTTR~~~va~ 314 (862)
-.+...+-.++=+|+||..-.. ..|+.+......|..||+||.+.+.+.
T Consensus 133 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~ 188 (302)
T TIGR01188 133 LDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEAD 188 (302)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHH
Confidence 3456667778889999987543 223444443345788999999886554
No 251
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.40 E-value=0.49 Score=50.92 Aligned_cols=26 Identities=35% Similarity=0.532 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|.|||||.+.++....
T Consensus 50 Ge~~~liG~NGsGKSTLlk~L~Gl~~ 75 (264)
T PRK13546 50 GDVIGLVGINGSGKSTLSNIIGGSLS 75 (264)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 35899999999999999999997654
No 252
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.39 E-value=0.19 Score=55.66 Aligned_cols=49 Identities=29% Similarity=0.300 Sum_probs=33.9
Q ss_pred HHHHHHhcC-CCceEEEEEcCCCCCHHHHHHHHHhCCCCC-----ccCceEEEee
Q 002972 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPER-----FVGGAVELGF 217 (862)
Q Consensus 169 ~l~~LL~~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~-----F~~~~~~~~~ 217 (862)
.+..+|..+ ....++-|+|.+|+|||+++.+++...... -...++|++.
T Consensus 90 ~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~t 144 (317)
T PRK04301 90 ELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDT 144 (317)
T ss_pred HHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeC
Confidence 344555542 346799999999999999999998654311 1246777765
No 253
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.36 E-value=0.16 Score=53.65 Aligned_cols=134 Identities=17% Similarity=0.172 Sum_probs=69.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEE----------eeeeeeecccc-cCCCchHHHHH-----------
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVEL----------GFGQWCSRAAC-NGSKSDYQKRL----------- 237 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~----------~~~~w~~~~~~-~~s~~~~~~~l----------- 237 (862)
-.+++|+|+.|.|||||.+.+.--.+..- ..+... .-..+++.... ..+.+-...++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~-G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~ 108 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSS-GEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW 108 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCc-ceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccc
Confidence 36999999999999999999987443110 000000 00112211000 00011111111
Q ss_pred --------HHHHHHHHHHhccccccCCCCC---CHHHHHHHHHHHhcCCCeEEEEEcCCCc------hHH-HHHhhccCC
Q 002972 238 --------ARKISKFLVQIGFWKKIKDENS---DLEYLCCLLQEALYGKSILILLDDVWEQ------DIV-ERFAKLYDN 299 (862)
Q Consensus 238 --------~~~i~~~l~~lg~~~~~~~~~~---~~~~l~~~l~~~L~~kr~LLVLDDV~~~------~~~-~~l~~~~~~ 299 (862)
.+.+.+.|...|...-...... .-+...-.+.+.|..++=||+||.--.. ..+ +.+..+...
T Consensus 109 ~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e 188 (254)
T COG1121 109 FRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE 188 (254)
T ss_pred cccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC
Confidence 1334444555554321222222 2233344677888999999999975422 222 222233345
Q ss_pred CceEEEEccchhhhh
Q 002972 300 DCKYLVTTRNEAVYE 314 (862)
Q Consensus 300 gsrILvTTR~~~va~ 314 (862)
|+.||+.|.+-+...
T Consensus 189 g~tIl~vtHDL~~v~ 203 (254)
T COG1121 189 GKTVLMVTHDLGLVM 203 (254)
T ss_pred CCEEEEEeCCcHHhH
Confidence 999999999976544
No 254
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.36 E-value=0.8 Score=47.30 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|.|||||.+.++-...
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45899999999999999999987643
No 255
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.34 E-value=0.033 Score=46.71 Aligned_cols=23 Identities=43% Similarity=0.609 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
+|+|.|.+|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 256
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.34 E-value=0.66 Score=47.95 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|+|||||++.++-...
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 50 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 45899999999999999999987643
No 257
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.33 E-value=0.14 Score=63.41 Aligned_cols=47 Identities=26% Similarity=0.374 Sum_probs=34.0
Q ss_pred CCcCccHHHHHHHHHhcC------------CCceEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 160 GYPISSKSKFLRKLLEQE------------ETHQVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 160 ~~g~~~~~~~l~~LL~~~------------~~~~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
..|.+...+.+.+++... ...+-|.++|++|+|||+||+.+++....
T Consensus 180 i~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~ 238 (733)
T TIGR01243 180 IGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA 238 (733)
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCC
Confidence 346776666666655310 12467889999999999999999987643
No 258
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.33 E-value=0.022 Score=36.38 Aligned_cols=22 Identities=14% Similarity=0.303 Sum_probs=19.2
Q ss_pred cccEEEecccccccccChhhccc
Q 002972 565 SISELEVSRICFSGILGPRIADL 587 (862)
Q Consensus 565 ~LrvLdLs~~~i~~~LP~~I~~L 587 (862)
+|++|||+++.|+. +|+++++|
T Consensus 1 ~L~~Ldls~n~l~~-ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTS-IPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESE-EGTTTTT-
T ss_pred CccEEECCCCcCEe-CChhhcCC
Confidence 48999999999998 99998875
No 259
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.33 E-value=0.094 Score=61.96 Aligned_cols=25 Identities=32% Similarity=0.694 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-++..++|++|+||||||.-++++.
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqa 350 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQA 350 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhc
Confidence 6899999999999999999999874
No 260
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.28 E-value=0.77 Score=47.48 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-.+++|+|..|.|||||++.++.-.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998754
No 261
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.28 E-value=0.038 Score=57.08 Aligned_cols=27 Identities=33% Similarity=0.356 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
...+|+|+|++|+||||||+.++....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 357999999999999999999987654
No 262
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.26 E-value=0.88 Score=47.01 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|.|..|+|||||++.++....
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35899999999999999999997643
No 263
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.26 E-value=0.79 Score=47.29 Aligned_cols=26 Identities=38% Similarity=0.466 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|.|||||++.++....
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46999999999999999999987543
No 264
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=94.25 E-value=0.88 Score=47.07 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|.|..|.|||||++.++-...
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (213)
T TIGR01277 24 GEIVAIMGPSGAGKSTLLNLIAGFIE 49 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46999999999999999999997654
No 265
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.25 E-value=1.1 Score=46.93 Aligned_cols=26 Identities=35% Similarity=0.396 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|.|||||++.++--..
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 36 GETIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 46999999999999999999997643
No 266
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.25 E-value=0.62 Score=47.25 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|.|||||.+.++....
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35899999999999999999987553
No 267
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.23 E-value=0.55 Score=47.34 Aligned_cols=26 Identities=35% Similarity=0.424 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|+|||||.+.++.-..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC
Confidence 45999999999999999999987654
No 268
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.21 E-value=0.063 Score=56.47 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=28.6
Q ss_pred HHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 171 RKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 171 ~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
..+........+|+|.|.+|.|||||++.+....+.
T Consensus 24 ~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 24 AALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred HHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 333334456889999999999999999999987664
No 269
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=94.20 E-value=1.2 Score=47.71 Aligned_cols=26 Identities=38% Similarity=0.423 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|.|||||++.++....
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~i~G~~~ 56 (257)
T PRK10619 31 GDVISIIGSSGSGKSTFLRCINFLEK 56 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46999999999999999999997654
No 270
>PRK09354 recA recombinase A; Provisional
Probab=94.20 E-value=0.15 Score=56.61 Aligned_cols=100 Identities=18% Similarity=0.105 Sum_probs=56.8
Q ss_pred HHHHHHHh-cC-CCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHH
Q 002972 168 KFLRKLLE-QE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFL 245 (862)
Q Consensus 168 ~~l~~LL~-~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l 245 (862)
..+..+|. .+ +.-+++-|+|++|+||||||.+++...... ...++|+++..- ..+ ..++.+.--+
T Consensus 46 ~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~-G~~~~yId~E~s-----------~~~-~~a~~lGvdl 112 (349)
T PRK09354 46 LALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKA-GGTAAFIDAEHA-----------LDP-VYAKKLGVDI 112 (349)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEECCccc-----------hHH-HHHHHcCCCH
Confidence 34666676 32 346799999999999999999987654322 345677766321 111 1222221111
Q ss_pred HHhccccccCCCCCCHHHHHHHHHHHhc-CCCeEEEEEcCC
Q 002972 246 VQIGFWKKIKDENSDLEYLCCLLQEALY-GKSILILLDDVW 285 (862)
Q Consensus 246 ~~lg~~~~~~~~~~~~~~l~~~l~~~L~-~kr~LLVLDDV~ 285 (862)
..+- ...+.+.++....+...++ ++--++|+|-|-
T Consensus 113 d~ll-----i~qp~~~Eq~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 113 DNLL-----VSQPDTGEQALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHeE-----EecCCCHHHHHHHHHHHhhcCCCCEEEEeChh
Confidence 1111 1122345566666555554 356789999875
No 271
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=94.17 E-value=1.3 Score=52.68 Aligned_cols=124 Identities=17% Similarity=0.189 Sum_probs=71.0
Q ss_pred cCccHHHHHHHHHh----cCCCceEEEEEcCCCCCHHHHHHHHHhCCC--------CCccCceEEEeeeeeeecccccCC
Q 002972 162 PISSKSKFLRKLLE----QEETHQVILIVGLSGIGKSCLARQVASDPP--------ERFVGGAVELGFGQWCSRAACNGS 229 (862)
Q Consensus 162 g~~~~~~~l~~LL~----~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~--------~~F~~~~~~~~~~~w~~~~~~~~s 229 (862)
.|+.+...|...+. .++.-..+=|.|-+|.|||..+..|.+... ..|+ .+.+|.-.-. +
T Consensus 400 cRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~--yveINgm~l~-------~ 470 (767)
T KOG1514|consen 400 CRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD--YVEINGLRLA-------S 470 (767)
T ss_pred chhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc--EEEEcceeec-------C
Confidence 45655555555443 323355888999999999999999988442 2353 2222221110 2
Q ss_pred CchHHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhc-----CCCeEEEEEcCCCc-----hHHHHHhhcc-C
Q 002972 230 KSDYQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALY-----GKSILILLDDVWEQ-----DIVERFAKLY-D 298 (862)
Q Consensus 230 ~~~~~~~l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~L~-----~kr~LLVLDDV~~~-----~~~~~l~~~~-~ 298 (862)
...+...|...+ ...........+.+..++. .+.+++++|+++.. +.+..|..|. .
T Consensus 471 ----~~~~Y~~I~~~l---------sg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~ 537 (767)
T KOG1514|consen 471 ----PREIYEKIWEAL---------SGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTL 537 (767)
T ss_pred ----HHHHHHHHHHhc---------ccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcC
Confidence 344444444332 2222233444555555554 35689999988643 4466666666 3
Q ss_pred CCceEEEEc
Q 002972 299 NDCKYLVTT 307 (862)
Q Consensus 299 ~gsrILvTT 307 (862)
++||++|-+
T Consensus 538 ~~sKLvvi~ 546 (767)
T KOG1514|consen 538 KNSKLVVIA 546 (767)
T ss_pred CCCceEEEE
Confidence 688766554
No 272
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.17 E-value=0.83 Score=47.95 Aligned_cols=26 Identities=35% Similarity=0.441 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|+|||||++.++.-..
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45999999999999999999987654
No 273
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=94.15 E-value=0.014 Score=57.04 Aligned_cols=105 Identities=23% Similarity=0.230 Sum_probs=56.4
Q ss_pred ccccccccchhhhcCchhHHHHhhcCCCCCcccccHHHHHHHhhhcCChhhHHHHhhhccHHHHHhhcCcchhhhhHHHH
Q 002972 609 KGDYCSYIPSLETTGAVDKLAGLLQKSEDPMIQTDILTVLTKLAEFGTPETVDKVLQSIPFDKLATLLSYDAKEWHENMF 688 (862)
Q Consensus 609 ~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~t~~~~~~~l~~l~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 688 (862)
..|++.+++. .|.+.+|..+.....+..++..-.+.|..|.|+.- .-.+++ ++-|+
T Consensus 136 dndfe~lp~d---vg~lt~lqil~lrdndll~lpkeig~lt~lrelhi-----------qgnrl~-vlppe--------- 191 (264)
T KOG0617|consen 136 DNDFEILPPD---VGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHI-----------QGNRLT-VLPPE--------- 191 (264)
T ss_pred CCCcccCChh---hhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhc-----------ccceee-ecChh---------
Confidence 4455555555 45577776665555666666666666666655321 111111 11111
Q ss_pred HHHHHHHhhcchHHHHHHHH-hhhhHHHHHHhhcchhhHHHHHHHHHHHHHHh
Q 002972 689 TILMSLAKVGKSKAVEKMFA-FEIDKNLIKLLENGSEVVQHHAIVTLKAFYEL 740 (862)
Q Consensus 689 ~~~~~l~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (862)
+..+.-+|.- .+.+|.+ .=++.+-.+++..-|-|.-++.-.+-|-||.-
T Consensus 192 --l~~l~l~~~k-~v~r~E~NPwv~pIaeQf~lG~shV~~yirtetYky~ygR 241 (264)
T KOG0617|consen 192 --LANLDLVGNK-QVMRMEENPWVNPIAEQFLLGISHVIDYIRTETYKYIYGR 241 (264)
T ss_pred --hhhhhhhhhH-HHHhhhhCCCCChHHHHHHhhHHHHHHHHhhhhhhhhhcc
Confidence 2233334443 6777776 34555556666666666666665567767643
No 274
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.13 E-value=1 Score=46.60 Aligned_cols=25 Identities=44% Similarity=0.468 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+++|+|..|.|||||++.++....
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~ 48 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEK 48 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCC
Confidence 7999999999999999999987643
No 275
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=94.13 E-value=1.1 Score=47.45 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-.+++|+|..|.|||||++.++...
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 29 GEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999998654
No 276
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.13 E-value=0.13 Score=55.97 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.++++|+|++|+||||++..++....
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999887654
No 277
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.12 E-value=0.041 Score=54.70 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
...|.|+|++|+||||+|+.++....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999999874
No 278
>PTZ00301 uridine kinase; Provisional
Probab=94.11 E-value=0.041 Score=57.04 Aligned_cols=26 Identities=42% Similarity=0.491 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..+|+|.|.+|+||||||+.+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 46899999999999999999887654
No 279
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.11 E-value=0.16 Score=56.04 Aligned_cols=99 Identities=19% Similarity=0.106 Sum_probs=55.1
Q ss_pred HHHHHHh-cC-CCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHH
Q 002972 169 FLRKLLE-QE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLV 246 (862)
Q Consensus 169 ~l~~LL~-~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~ 246 (862)
.+..+|. .+ +.-+++-|+|++|+||||||.+++...... ...++|++...- ... ..++.+.--+.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~-g~~~vyId~E~~-----------~~~-~~a~~lGvd~~ 108 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKL-GGTVAFIDAEHA-----------LDP-VYAKKLGVDLD 108 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCCEEEECcccc-----------HHH-HHHHHcCCCHH
Confidence 4566665 32 346799999999999999999987654322 245666665321 111 11222210011
Q ss_pred HhccccccCCCCCCHHHHHHHHHHHhc-CCCeEEEEEcCC
Q 002972 247 QIGFWKKIKDENSDLEYLCCLLQEALY-GKSILILLDDVW 285 (862)
Q Consensus 247 ~lg~~~~~~~~~~~~~~l~~~l~~~L~-~kr~LLVLDDV~ 285 (862)
.+- -..+.+.++....+....+ +.--++|+|-|-
T Consensus 109 ~l~-----v~~p~~~eq~l~i~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 109 NLL-----ISQPDTGEQALEIADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred Hhe-----ecCCCCHHHHHHHHHHHHhccCCCEEEEcchH
Confidence 110 1122345566666655554 356789999874
No 280
>PRK10908 cell division protein FtsE; Provisional
Probab=94.11 E-value=1 Score=46.91 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|+|||||.+.++-...
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 28 GEMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46999999999999999999987643
No 281
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.11 E-value=0.64 Score=52.69 Aligned_cols=198 Identities=15% Similarity=0.120 Sum_probs=101.5
Q ss_pred cCCCcCccHHHHHHHHHhcC---CCceEEEEEcCCCCCHHHHHHHHHhCCCCCccC-ceEEEeeeeeeecccccCCCchH
Q 002972 158 EQGYPISSKSKFLRKLLEQE---ETHQVILIVGLSGIGKSCLARQVASDPPERFVG-GAVELGFGQWCSRAACNGSKSDY 233 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~---~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~-~~~~~~~~~w~~~~~~~~s~~~~ 233 (862)
..+.||+.+...+..++... .....+=|.|-+|.|||.+...++.+....... ..++++. . +. ..
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc---------~-sl-~~ 218 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINC---------T-SL-TE 218 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEee---------c-cc-cc
Confidence 45568999999999887652 236678899999999999999999887644332 2333332 1 11 11
Q ss_pred HHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhcC-C-CeEEEEEcCCCch-----HHHHHhhcc-CCCceEEE
Q 002972 234 QKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYG-K-SILILLDDVWEQD-----IVERFAKLY-DNDCKYLV 305 (862)
Q Consensus 234 ~~~l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~L~~-k-r~LLVLDDV~~~~-----~~~~l~~~~-~~gsrILv 305 (862)
...++..|...+.+.. .......+..+.+...... + -+|+|+|.++... .+-.+..|. -+++|+|+
T Consensus 219 ~~aiF~kI~~~~~q~~------~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iL 292 (529)
T KOG2227|consen 219 ASAIFKKIFSSLLQDL------VSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIIL 292 (529)
T ss_pred hHHHHHHHHHHHHHHh------cCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeee
Confidence 2334444443332111 1111113444555555444 3 5999999987542 122222221 23554443
Q ss_pred Ec---------cchhhhhh---cccccc---cCChhhHHHHHHHHhhhccccc--CcchHHHHHHHHhhhCCchHHHHHH
Q 002972 306 TT---------RNEAVYEI---TEAEKV---ELSKDDIMEISKSILLYHSLLA--EEELPAAAESLLERCGHHPLTVAVM 368 (862)
Q Consensus 306 TT---------R~~~va~~---~~~~~~---~L~~~ea~~Lf~~~~~~~~~~~--~~~l~~~~~~Iv~~cgGLPLAI~~i 368 (862)
-- |.-.-... +.+..+ |-+.++-.+++.+.+....... +..++-.+++++.-.|.+--|+.+.
T Consensus 293 iGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~ 372 (529)
T KOG2227|consen 293 IGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVC 372 (529)
T ss_pred eeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHH
Confidence 21 11111110 111112 6788999999888775433221 1122223333333334455555554
Q ss_pred hhhh
Q 002972 369 GKAL 372 (862)
Q Consensus 369 g~~L 372 (862)
-+.+
T Consensus 373 R~ai 376 (529)
T KOG2227|consen 373 RRAI 376 (529)
T ss_pred HHHH
Confidence 4444
No 282
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.10 E-value=0.35 Score=52.01 Aligned_cols=118 Identities=18% Similarity=0.189 Sum_probs=66.7
Q ss_pred cHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHH
Q 002972 165 SKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKF 244 (862)
Q Consensus 165 ~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~ 244 (862)
+..+.+..++... ..+|.|.|..|+||||++..+.+..... ...++.+.= ..+.... .+
T Consensus 67 ~~~~~l~~~~~~~--~GlilisG~tGSGKTT~l~all~~i~~~-~~~iitiEd-----------p~E~~~~----~~--- 125 (264)
T cd01129 67 ENLEIFRKLLEKP--HGIILVTGPTGSGKTTTLYSALSELNTP-EKNIITVED-----------PVEYQIP----GI--- 125 (264)
T ss_pred HHHHHHHHHHhcC--CCEEEEECCCCCcHHHHHHHHHhhhCCC-CCeEEEECC-----------CceecCC----Cc---
Confidence 4555666666543 3489999999999999999887665321 112221110 1110000 00
Q ss_pred HHHhccccccCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHhhccCCCceEEEEccch
Q 002972 245 LVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLYDNDCKYLVTTRNE 310 (862)
Q Consensus 245 l~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~~~~~l~~~~~~gsrILvTTR~~ 310 (862)
.+.. .... ........++..+....=.++++++.+.+....+......|..++-|..-.
T Consensus 126 -~q~~----v~~~--~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~aa~tGh~v~tTlHa~ 184 (264)
T cd01129 126 -NQVQ----VNEK--AGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQAALTGHLVLSTLHTN 184 (264)
T ss_pred -eEEE----eCCc--CCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHHHHcCCcEEEEeccC
Confidence 0000 0111 011345667777888888999999999987766555455565554444433
No 283
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.09 E-value=0.98 Score=48.27 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|+|||||++.++....
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35899999999999999999997643
No 284
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.09 E-value=0.25 Score=54.42 Aligned_cols=49 Identities=29% Similarity=0.310 Sum_probs=34.5
Q ss_pred HHHHHHhcC-CCceEEEEEcCCCCCHHHHHHHHHhCCCCC-----ccCceEEEee
Q 002972 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPER-----FVGGAVELGF 217 (862)
Q Consensus 169 ~l~~LL~~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~-----F~~~~~~~~~ 217 (862)
.+..+|..+ ....++-|+|.+|+||||++.+++...... -...++|++.
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~t 137 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDT 137 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEEC
Confidence 455666643 336789999999999999999998764311 1236777765
No 285
>PRK00625 shikimate kinase; Provisional
Probab=94.08 E-value=0.038 Score=55.47 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.|.++||+|+||||+++.+++...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998765
No 286
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.07 E-value=0.51 Score=50.20 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|+|||||++.++....
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~ 50 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 35999999999999999999987654
No 287
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.07 E-value=1.1 Score=46.25 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
+++|+|..|.|||||++.++.-.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999998654
No 288
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.07 E-value=0.79 Score=48.92 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|.|||||++.++....
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl~~ 55 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGLVA 55 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999997643
No 289
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.05 E-value=0.25 Score=58.07 Aligned_cols=48 Identities=21% Similarity=0.238 Sum_probs=33.5
Q ss_pred HHHHHhcC-CCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEee
Q 002972 170 LRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (862)
Q Consensus 170 l~~LL~~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 217 (862)
+..+|..+ ..-+++.|.|.+|+||||||.+++..-..++...++|+.+
T Consensus 10 LD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~ 58 (484)
T TIGR02655 10 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTF 58 (484)
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 44555543 3468999999999999999999976533333345666665
No 290
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.03 E-value=0.31 Score=52.80 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=27.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCcc
Q 002972 178 ETHQVILIVGLSGIGKSCLARQVASDPPERFV 209 (862)
Q Consensus 178 ~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~ 209 (862)
.+..+|.|.|.+|+|||||...+.+.......
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~ 133 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVP 133 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCC
Confidence 35889999999999999999999998765543
No 291
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=94.03 E-value=0.54 Score=58.52 Aligned_cols=50 Identities=20% Similarity=0.425 Sum_probs=36.3
Q ss_pred CCCcCccHHHHHHHHHh-----cCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCc
Q 002972 159 QGYPISSKSKFLRKLLE-----QEETHQVILIVGLSGIGKSCLARQVASDPPERF 208 (862)
Q Consensus 159 ~~~g~~~~~~~l~~LL~-----~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F 208 (862)
..+|.++-.+.+..++. ......++.++|++|+|||++|+.+++.....|
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 45677766666655443 122345899999999999999999999876544
No 292
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.01 E-value=0.6 Score=48.31 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 002972 183 ILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 183 I~I~G~gGiGKTtLA~~v~~~~ 204 (862)
|.|.|++|+||||+|+.++...
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999998765
No 293
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.00 E-value=0.99 Score=46.78 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=39.0
Q ss_pred HHHHHHhcCCCeEEEEEcCCCchHHHHHh-------hccCCCceEEEEccchhhhhhcccccc
Q 002972 266 CLLQEALYGKSILILLDDVWEQDIVERFA-------KLYDNDCKYLVTTRNEAVYEITEAEKV 321 (862)
Q Consensus 266 ~~l~~~L~~kr~LLVLDDV~~~~~~~~l~-------~~~~~gsrILvTTR~~~va~~~~~~~~ 321 (862)
..+.+.+-=++-+.|||..++--+.+.+. ....+|+.+|+.|....++....++.+
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~v 215 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKV 215 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEE
Confidence 34445555567799999998776555443 223678888999999988887765543
No 294
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.99 E-value=1.1 Score=46.13 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|+|||||.+.++.-..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35999999999999999999987653
No 295
>PRK06547 hypothetical protein; Provisional
Probab=93.97 E-value=0.053 Score=54.40 Aligned_cols=28 Identities=36% Similarity=0.406 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 178 ETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 178 ~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
....+|+|.|.+|+||||+|+.+++...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578999999999999999999998754
No 296
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=93.97 E-value=0.88 Score=47.42 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-.+++|+|..|.|||||.+.++-..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 26 NSVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4599999999999999999998754
No 297
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.95 E-value=0.17 Score=54.35 Aligned_cols=37 Identities=30% Similarity=0.306 Sum_probs=27.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEee
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 217 (862)
-+++.|.|.+|+|||++|.+++.....+ ...++|+++
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~-Ge~vlyis~ 72 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR-GNPVLFVTV 72 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEe
Confidence 6799999999999999999987654322 235666665
No 298
>PRK04040 adenylate kinase; Provisional
Probab=93.94 E-value=0.042 Score=55.92 Aligned_cols=26 Identities=19% Similarity=0.514 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..+|+|+|++|+||||+++.+.+...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 36899999999999999999998764
No 299
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=93.90 E-value=1.5 Score=44.87 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-.+++|+|..|.|||||.+.++...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 26 GEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4699999999999999999998764
No 300
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=93.89 E-value=1.1 Score=48.09 Aligned_cols=26 Identities=42% Similarity=0.507 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|+|||||.+.++....
T Consensus 38 Ge~~~I~G~NGsGKSTLlk~l~Gl~~ 63 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45999999999999999999987543
No 301
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.89 E-value=0.36 Score=50.60 Aligned_cols=48 Identities=21% Similarity=0.178 Sum_probs=31.1
Q ss_pred HHHHHHhcC-CCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEee
Q 002972 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (862)
Q Consensus 169 ~l~~LL~~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 217 (862)
.+..++..+ ..-.++.|.|.+|+||||||.+++.....+ ...++|+++
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~-g~~~~~is~ 56 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD-GDPVIYVTT 56 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhc-CCeEEEEEc
Confidence 344555432 335799999999999999999876543222 234555554
No 302
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=93.87 E-value=0.69 Score=50.60 Aligned_cols=50 Identities=22% Similarity=0.181 Sum_probs=33.9
Q ss_pred HHHHHhcCCCeEEEEEcCCCc-------hHHHHHhhccCCC-ceEEEEccchhhhhhc
Q 002972 267 LLQEALYGKSILILLDDVWEQ-------DIVERFAKLYDND-CKYLVTTRNEAVYEIT 316 (862)
Q Consensus 267 ~l~~~L~~kr~LLVLDDV~~~-------~~~~~l~~~~~~g-srILvTTR~~~va~~~ 316 (862)
.+...|-+++=++|||.--+. +.|+.+......| ..|++||....-+...
T Consensus 146 ~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~ 203 (293)
T COG1131 146 SIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEEL 203 (293)
T ss_pred HHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHh
Confidence 455667788899999987533 3355555544555 6899999987665543
No 303
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=93.87 E-value=1.1 Score=46.71 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-.+++|+|..|+|||||++.++.-.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 26 GEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4699999999999999999998654
No 304
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=93.87 E-value=0.93 Score=46.65 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-.+++|+|..|.|||||.+.++-..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 26 GEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc
Confidence 4699999999999999999998654
No 305
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=93.87 E-value=1.3 Score=48.80 Aligned_cols=48 Identities=25% Similarity=0.205 Sum_probs=33.2
Q ss_pred HHHHHhcCCCeEEEEEcCCCc-------hHHHHHhhccCCCceEEEEccchhhhh
Q 002972 267 LLQEALYGKSILILLDDVWEQ-------DIVERFAKLYDNDCKYLVTTRNEAVYE 314 (862)
Q Consensus 267 ~l~~~L~~kr~LLVLDDV~~~-------~~~~~l~~~~~~gsrILvTTR~~~va~ 314 (862)
.+...+-.++=+|+||.--.. ..|+.+......|..||+||.+.+-+.
T Consensus 148 ~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~ 202 (306)
T PRK13537 148 TLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAE 202 (306)
T ss_pred HHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHH
Confidence 466667778889999987543 234444443345889999999887554
No 306
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.81 E-value=1.3 Score=47.77 Aligned_cols=26 Identities=38% Similarity=0.533 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|+|||||.+.++--..
T Consensus 50 Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 50 GEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36999999999999999999987653
No 307
>PRK13947 shikimate kinase; Provisional
Probab=93.78 E-value=0.046 Score=54.43 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=22.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDPPER 207 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~~~~ 207 (862)
-|.|+|++|+||||+|+.+++...-.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 48899999999999999999987543
No 308
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.78 E-value=0.56 Score=55.81 Aligned_cols=27 Identities=30% Similarity=0.300 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.-..++|+|..|+|||||++.+..-..
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 356899999999999999999986554
No 309
>PHA02244 ATPase-like protein
Probab=93.78 E-value=0.13 Score=57.37 Aligned_cols=26 Identities=27% Similarity=0.380 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDPPER 207 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~~~~ 207 (862)
-|.|+|++|+|||+||+++++.....
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~lg~p 146 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALDLD 146 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 46789999999999999999875433
No 310
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=93.78 E-value=1.4 Score=45.80 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|.|||||.+.++....
T Consensus 31 G~~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45999999999999999999987643
No 311
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=93.76 E-value=1.2 Score=47.00 Aligned_cols=26 Identities=31% Similarity=0.416 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|.|..|.|||||++.++-...
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (242)
T PRK11124 28 GETLVLLGPSGAGKSSLLRVLNLLEM 53 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36899999999999999999987643
No 312
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.75 E-value=0.48 Score=49.41 Aligned_cols=58 Identities=14% Similarity=0.219 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEcCCC----c---hHHHHHhhcc-CCCceEEEEccchhhhhhcc
Q 002972 260 DLEYLCCLLQEALYGKSILILLDDVWE----Q---DIVERFAKLY-DNDCKYLVTTRNEAVYEITE 317 (862)
Q Consensus 260 ~~~~l~~~l~~~L~~kr~LLVLDDV~~----~---~~~~~l~~~~-~~gsrILvTTR~~~va~~~~ 317 (862)
.-++..-.+.+.|-..+-+|+.|.--. . ..++.+.... ..|..||+.|.+..++..+.
T Consensus 145 GGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 145 GGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 334444567778888888999997531 1 2233333322 34889999999999988654
No 313
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=93.75 E-value=1.1 Score=46.84 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+++|+|..|.|||||++.++....
T Consensus 7 e~~~l~G~nGsGKSTLl~~l~G~~~ 31 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRAILGLIP 31 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5899999999999999999997543
No 314
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=93.73 E-value=0.44 Score=57.99 Aligned_cols=29 Identities=34% Similarity=0.598 Sum_probs=24.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCc
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERF 208 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F 208 (862)
.+-|.++|++|+|||++|+.++......|
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~~~~f 213 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEAKVPF 213 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 34599999999999999999998765443
No 315
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=93.72 E-value=1.4 Score=47.45 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-.+++|+|..|.|||||++.++.-.
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 37 GKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 4599999999999999999998654
No 316
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=93.72 E-value=0.13 Score=52.81 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=39.2
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC-CCccCceEE
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP-ERFVGGAVE 214 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~ 214 (862)
...+|-++..+.+.-+-.+ ++.+-+.|.||+|+||||-+..+++..- ..|..+++.
T Consensus 27 ~dIVGNe~tv~rl~via~~-gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLE 83 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE-GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLE 83 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc-CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhh
Confidence 4556777777776655544 4677888999999999998888877653 335444433
No 317
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.71 E-value=1.6 Score=46.40 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-.+++|+|..|+|||||++.++-..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 29 NTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3589999999999999999998754
No 318
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.69 E-value=0.23 Score=52.40 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=28.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEee
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 217 (862)
-.++.|.|.+|+|||+++.+++.+...+....++|+++
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 46999999999999999999887654332334555544
No 319
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.68 E-value=1.2 Score=47.50 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-.+++|+|..|.|||||++.++.-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 31 QEIVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCc
Confidence 4699999999999999999998754
No 320
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.66 E-value=1.4 Score=46.86 Aligned_cols=26 Identities=35% Similarity=0.406 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|.|||||.+.++--..
T Consensus 30 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 55 (253)
T PRK14267 30 NGVFALMGPSGCGKSTLLRTFNRLLE 55 (253)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 35899999999999999999986543
No 321
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=93.65 E-value=0.061 Score=55.43 Aligned_cols=29 Identities=28% Similarity=0.349 Sum_probs=25.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPPER 207 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~~~ 207 (862)
.+.+|+|.|.+|+||||+|+.++......
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 46799999999999999999999987754
No 322
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=93.64 E-value=1.4 Score=48.50 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|.|||||.+.++.-..
T Consensus 30 Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 55 (303)
T TIGR01288 30 GECFGLLGPNGAGKSTIARMLLGMIS 55 (303)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35999999999999999999987543
No 323
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=93.57 E-value=1.7 Score=46.10 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
-.+++|+|..|+|||||++.++..
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 33 GEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCC
Confidence 459999999999999999999874
No 324
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=93.56 E-value=0.27 Score=57.28 Aligned_cols=47 Identities=26% Similarity=0.305 Sum_probs=39.1
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
...+|.+.-.+.|...+..+.-..-....|+-|+||||+|+-++..+
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~Akal 62 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKAL 62 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHh
Confidence 34578888888899888877656778889999999999999998754
No 325
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.56 E-value=0.059 Score=54.06 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
++|.+.|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988754
No 326
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.55 E-value=1.4 Score=46.34 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|.|||||.+.++....
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~g~~~ 51 (232)
T cd03300 26 GEFFTLLGPSGCGKTTLLRLIAGFET 51 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46999999999999999999997654
No 327
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.53 E-value=0.31 Score=60.30 Aligned_cols=107 Identities=17% Similarity=0.161 Sum_probs=60.0
Q ss_pred CCCeEEEEEcCCCc---hHHHH----Hhhc-cCCCceEEEEccchhhhhhcccc-cc-----cCChhhHHHHHHHHhhhc
Q 002972 274 GKSILILLDDVWEQ---DIVER----FAKL-YDNDCKYLVTTRNEAVYEITEAE-KV-----ELSKDDIMEISKSILLYH 339 (862)
Q Consensus 274 ~kr~LLVLDDV~~~---~~~~~----l~~~-~~~gsrILvTTR~~~va~~~~~~-~~-----~L~~~ea~~Lf~~~~~~~ 339 (862)
..+-|+++|..-.. ..... +... ...|+.+|+||....+....... .+ .++.+. + .+..
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~---l----~p~Y 473 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALMYNNEGVENASVLFDEET---L----SPTY 473 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCC---C----ceEE
Confidence 47899999998643 22222 2222 24689999999998875533211 11 222211 0 0111
Q ss_pred cc-ccCcchHHHHHHHHhhhCCchHHHHHHhhhhhccCCHHHHHHHHHHhhh
Q 002972 340 SL-LAEEELPAAAESLLERCGHHPLTVAVMGKALRKELRSEKWEKAITDLST 390 (862)
Q Consensus 340 ~~-~~~~~l~~~~~~Iv~~cgGLPLAI~~ig~~L~~~~~~~~W~~~l~~L~~ 390 (862)
.. ...++ ...+-.|++++ |+|-.|.--|..+... ...+.+.++++|..
T Consensus 474 kl~~G~~g-~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~~L~~ 522 (771)
T TIGR01069 474 KLLKGIPG-ESYAFEIAQRY-GIPHFIIEQAKTFYGE-FKEEINVLIEKLSA 522 (771)
T ss_pred EECCCCCC-CcHHHHHHHHh-CcCHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 11 01111 24567777776 8888888888777543 34567777777654
No 328
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=93.52 E-value=2.5 Score=46.72 Aligned_cols=182 Identities=15% Similarity=0.137 Sum_probs=93.0
Q ss_pred cHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCC-C---ccCceEEEeeeeeeecccccCCCchHHHHHHHH
Q 002972 165 SKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPE-R---FVGGAVELGFGQWCSRAACNGSKSDYQKRLARK 240 (862)
Q Consensus 165 ~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~-~---F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~ 240 (862)
+.-+.+...+..+.-...+.++|+.|+||+++|..+++..-- + -+|+. |.+
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~-------------C~s------------ 64 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGF-------------CHS------------ 64 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCC-------------CHH------------
Confidence 334455566655555778999999999999999999875421 0 11111 100
Q ss_pred HHHHHHHhccccc----cC---CCCCCHHHHHHHHHHHh-----cCCCeEEEEEcCCCc--hHHHHHhhcc---CCCceE
Q 002972 241 ISKFLVQIGFWKK----IK---DENSDLEYLCCLLQEAL-----YGKSILILLDDVWEQ--DIVERFAKLY---DNDCKY 303 (862)
Q Consensus 241 i~~~l~~lg~~~~----~~---~~~~~~~~l~~~l~~~L-----~~kr~LLVLDDV~~~--~~~~~l~~~~---~~gsrI 303 (862)
+..+. .|.+.+ .+ ...-.++++.+ +.+.+ .+++=++|+|+++.. ...+.+...+ ++++.+
T Consensus 65 -C~~~~-~g~HPD~~~i~p~~~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~f 141 (319)
T PRK06090 65 -CELMQ-SGNHPDLHVIKPEKEGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLF 141 (319)
T ss_pred -HHHHH-cCCCCCEEEEecCcCCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEE
Confidence 00000 010000 00 01123444332 23333 244568899999866 4456665444 456665
Q ss_pred EEEccc-hhhhhh----cccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHHHHhhhhhccCC
Q 002972 304 LVTTRN-EAVYEI----TEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMGKALRKELR 377 (862)
Q Consensus 304 LvTTR~-~~va~~----~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~~ig~~L~~~~~ 377 (862)
|++|.+ ..+... +....+ +++.+++.+.+.+. + .+ ....++..++|.|+...... ... .
T Consensus 142 iL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~----~---~~----~~~~~l~l~~G~p~~A~~~~---~~~-~ 206 (319)
T PRK06090 142 LLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQ----G---IT----VPAYALKLNMGSPLKTLAMM---KEG-G 206 (319)
T ss_pred EEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHc----C---Cc----hHHHHHHHcCCCHHHHHHHh---CCC-c
Confidence 555554 444332 222222 56777766654332 1 11 23467889999998765442 221 2
Q ss_pred HHHHHHHHHHhh
Q 002972 378 SEKWEKAITDLS 389 (862)
Q Consensus 378 ~~~W~~~l~~L~ 389 (862)
.+.++.++..+.
T Consensus 207 ~~~~~~~~~~l~ 218 (319)
T PRK06090 207 LEKYHKLERQLV 218 (319)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 329
>PRK01184 hypothetical protein; Provisional
Probab=93.51 E-value=0.41 Score=48.24 Aligned_cols=22 Identities=32% Similarity=0.702 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 002972 181 QVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
.+|+|+|++|+||||+|+ ++..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~ 23 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IARE 23 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHH
Confidence 489999999999999987 5544
No 330
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=93.50 E-value=1.9 Score=46.02 Aligned_cols=26 Identities=35% Similarity=0.388 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|.|||||++.++-...
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 54 (254)
T PRK10418 29 GRVLALVGGSGSGKSLTCAAALGILP 54 (254)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35899999999999999999986543
No 331
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=93.49 E-value=1.5 Score=46.75 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|.|||||.+.++....
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (252)
T TIGR03005 26 GEKVALIGPSGSGKSTILRILMTLEP 51 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35899999999999999999987643
No 332
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.48 E-value=0.05 Score=55.71 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
+|+|.|.+|+||||||+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 333
>PRK06217 hypothetical protein; Validated
Probab=93.48 E-value=0.058 Score=54.61 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=22.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.|.|.|.+|+||||+|+++.....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998764
No 334
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=93.47 E-value=0.24 Score=55.23 Aligned_cols=49 Identities=22% Similarity=0.146 Sum_probs=33.9
Q ss_pred HHHHHHhcC-CCceEEEEEcCCCCCHHHHHHHHHhCCC-----CCccCceEEEee
Q 002972 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPP-----ERFVGGAVELGF 217 (862)
Q Consensus 169 ~l~~LL~~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~-----~~F~~~~~~~~~ 217 (862)
.+..+|..+ ..-+++-|+|.+|+|||||+.+++-... ......++|+|.
T Consensus 114 ~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdT 168 (344)
T PLN03187 114 ALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDT 168 (344)
T ss_pred hHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEc
Confidence 456667653 2367888999999999999999864321 112356777775
No 335
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.47 E-value=0.29 Score=56.35 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.++++++|++|+||||++..++...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~ 245 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY 245 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3599999999999999888887654
No 336
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.44 E-value=0.062 Score=54.02 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+++|+|++|+|||||++.++....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988654
No 337
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.43 E-value=0.76 Score=46.31 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|.|||||.+.++.-..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35899999999999999999997654
No 338
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.42 E-value=0.89 Score=48.24 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-.+++|+|..|.|||||.+.++...
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 28 NKITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 3589999999999999999998653
No 339
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.41 E-value=0.065 Score=55.38 Aligned_cols=30 Identities=20% Similarity=0.450 Sum_probs=24.8
Q ss_pred HhcCCCceEEEEEcCCCCCHHHHHHHHHhC
Q 002972 174 LEQEETHQVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 174 L~~~~~~~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
+++....+.|.|+|++|+|||||+..+...
T Consensus 7 ~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 7 FNKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred cCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 334445789999999999999999999754
No 340
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.40 E-value=1.8 Score=45.80 Aligned_cols=26 Identities=35% Similarity=0.390 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|+|||||++.++.-..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (241)
T PRK14250 29 GAIYTIVGPSGAGKSTLIKLINRLID 54 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35899999999999999999987543
No 341
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.39 E-value=1.1 Score=48.27 Aligned_cols=26 Identities=35% Similarity=0.359 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|.|..|.|||||.+.++.-..
T Consensus 35 Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 60 (269)
T PRK13648 35 GQWTSIVGHNGSGKSTIAKLMIGIEK 60 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45999999999999999999987643
No 342
>PRK13948 shikimate kinase; Provisional
Probab=93.39 E-value=0.11 Score=52.71 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=25.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCC
Q 002972 178 ETHQVILIVGLSGIGKSCLARQVASDPPER 207 (862)
Q Consensus 178 ~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~ 207 (862)
...+.|.++|+.|+||||+++.+++.....
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~ 37 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLH 37 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 346789999999999999999999887543
No 343
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.37 E-value=0.053 Score=52.19 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
+|.|.|.+|+||||+|+.++....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998754
No 344
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=93.37 E-value=0.02 Score=65.95 Aligned_cols=99 Identities=14% Similarity=0.115 Sum_probs=70.5
Q ss_pred HHHH-HhccCCcccEEEecccccccccChhhccccCCCcccccccchhHh-----------hhc---cCccccccccchh
Q 002972 555 AILQ-ALMASKSISELEVSRICFSGILGPRIADLISRDSQSLTVVSAEAI-----------TNI---FSKGDYCSYIPSL 619 (862)
Q Consensus 555 ~~~~-~l~~~~~LrvLdLs~~~i~~~LP~~I~~L~~Lr~L~l~~s~~~~i-----------~~~---~~~~~~~~~~~~l 619 (862)
.+++ .|-++.-|-+||||++.++. ||+.|-.|.+|++|+|+....+-+ +.+ -.+-....+|+++
T Consensus 140 tIPn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl 218 (1255)
T KOG0444|consen 140 TIPNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL 218 (1255)
T ss_pred cCCchHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCch
Confidence 3454 66778888999999999999 999999999999999988544332 111 1233455778887
Q ss_pred hhcCchhHHHHhhcCCCCCcccccHHHHHHHhhhcCChhhH
Q 002972 620 ETTGAVDKLAGLLQKSEDPMIQTDILTVLTKLAEFGTPETV 660 (862)
Q Consensus 620 ~~~~~l~~l~~~~~~~~~~~t~~~~~~~l~~l~e~~~~~~~ 660 (862)
.+ +.+|+.+=..|.+. +-++..+-++..+++++..
T Consensus 219 d~---l~NL~dvDlS~N~L---p~vPecly~l~~LrrLNLS 253 (1255)
T KOG0444|consen 219 DD---LHNLRDVDLSENNL---PIVPECLYKLRNLRRLNLS 253 (1255)
T ss_pred hh---hhhhhhccccccCC---CcchHHHhhhhhhheeccC
Confidence 77 78888775555443 4456677777777765544
No 345
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=93.33 E-value=1.5 Score=46.87 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|.|||||.+.++.-..
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (262)
T PRK09984 30 GEMVALLGPSGSGKSTLLRHLSGLIT 55 (262)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 35899999999999999999986543
No 346
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.32 E-value=0.21 Score=57.08 Aligned_cols=49 Identities=29% Similarity=0.394 Sum_probs=34.5
Q ss_pred CCcCccHHHHH---HHHHhcC-------CC-ceEEEEEcCCCCCHHHHHHHHHhCCCCCc
Q 002972 160 GYPISSKSKFL---RKLLEQE-------ET-HQVILIVGLSGIGKSCLARQVASDPPERF 208 (862)
Q Consensus 160 ~~g~~~~~~~l---~~LL~~~-------~~-~~vI~I~G~gGiGKTtLA~~v~~~~~~~F 208 (862)
.-|.++-..++ .+.|.+. +. ++=|.++|++|.|||-||++++-....-|
T Consensus 306 VkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPF 365 (752)
T KOG0734|consen 306 VKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPF 365 (752)
T ss_pred ccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCe
Confidence 33666544444 4445442 12 67899999999999999999998766555
No 347
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=93.31 E-value=0.33 Score=57.44 Aligned_cols=49 Identities=22% Similarity=0.266 Sum_probs=34.8
Q ss_pred HHHHHHhcC-CCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEee
Q 002972 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (862)
Q Consensus 169 ~l~~LL~~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 217 (862)
-+..+|..+ ..-+++.|.|.+|+|||+||.+++.....++...++|+++
T Consensus 19 ~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ 68 (509)
T PRK09302 19 GFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTF 68 (509)
T ss_pred hHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEc
Confidence 345556432 3467999999999999999999886554444455666655
No 348
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.31 E-value=0.064 Score=51.39 Aligned_cols=23 Identities=43% Similarity=0.653 Sum_probs=20.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC
Q 002972 183 ILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 183 I~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
|.++|.+|+|||+||+.+++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~ 24 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG 24 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 67999999999999999998763
No 349
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.30 E-value=0.84 Score=47.52 Aligned_cols=30 Identities=33% Similarity=0.553 Sum_probs=26.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCc
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPPERF 208 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F 208 (862)
.++=|.++|++|.|||-||++|+++-...|
T Consensus 188 pprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 188 PPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred CCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 367788999999999999999999876555
No 350
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.27 E-value=0.15 Score=51.83 Aligned_cols=25 Identities=40% Similarity=0.550 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.++.|.|.+|+||||++.+++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~ 57 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALA 57 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4889999999999999999887553
No 351
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=93.25 E-value=1.4 Score=52.29 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-.+++|+|..|+|||||.+.++--.
T Consensus 37 Ge~~~liG~NGsGKSTLl~~l~Gl~ 61 (510)
T PRK15439 37 GEVHALLGGNGAGKSTLMKIIAGIV 61 (510)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998754
No 352
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=93.22 E-value=0.47 Score=52.31 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=34.3
Q ss_pred HHHHHHHhcC-CCceEEEEEcCCCCCHHHHHHHHHhCCC-----CCccCceEEEee
Q 002972 168 KFLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPP-----ERFVGGAVELGF 217 (862)
Q Consensus 168 ~~l~~LL~~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~-----~~F~~~~~~~~~ 217 (862)
..+..+|..+ ..-+++-|+|.+|+|||||+.+++-... ..-...++|+|.
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdt 138 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDT 138 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEc
Confidence 3466677653 2367899999999999999998774221 112356777775
No 353
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.22 E-value=0.82 Score=46.26 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 002972 183 ILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 183 I~I~G~gGiGKTtLA~~v~~~~ 204 (862)
|.|.|++|+||||+|+.++...
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999874
No 354
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.22 E-value=0.071 Score=51.32 Aligned_cols=27 Identities=33% Similarity=0.616 Sum_probs=22.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCc
Q 002972 182 VILIVGLSGIGKSCLARQVASDPPERF 208 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~~~~F 208 (862)
.|+|+|++|+|||||++.++......|
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccc
Confidence 378999999999999999998754443
No 355
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=93.21 E-value=0.64 Score=48.04 Aligned_cols=117 Identities=15% Similarity=0.231 Sum_probs=65.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCC---CccC-ceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHhccccccC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPE---RFVG-GAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIK 255 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~---~F~~-~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~lg~~~~~~ 255 (862)
..-..|.|++|+|||||.+.+++-... +|.. .+.-+|-+.-+ ..|....+. ..+.+.+ ..-
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEI--ag~~~gvpq--~~~g~R~-----------dVl 201 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEI--AGCLNGVPQ--HGRGRRM-----------DVL 201 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchh--hccccCCch--hhhhhhh-----------hhc
Confidence 344779999999999999999886653 3432 22222221111 112222221 1111111 001
Q ss_pred CCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHhhccCCCceEEEEccchhhhh
Q 002972 256 DENSDLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLYDNDCKYLVTTRNEAVYE 314 (862)
Q Consensus 256 ~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~~~~~l~~~~~~gsrILvTTR~~~va~ 314 (862)
+.....+.+...++.. .+=.+|+|.+-..++...+......|-+++.|..--.+-.
T Consensus 202 d~cpk~~gmmmaIrsm---~PEViIvDEIGt~~d~~A~~ta~~~GVkli~TaHG~~ied 257 (308)
T COG3854 202 DPCPKAEGMMMAIRSM---SPEVIIVDEIGTEEDALAILTALHAGVKLITTAHGNGIED 257 (308)
T ss_pred ccchHHHHHHHHHHhc---CCcEEEEeccccHHHHHHHHHHHhcCcEEEEeeccccHHH
Confidence 1111223334444432 4568999999999888888877888999888865544433
No 356
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.18 E-value=0.87 Score=49.25 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|+|||||++.++.-.+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (274)
T PRK13647 31 GSKTALLGPNGAGKSTLLLHLNGIYL 56 (274)
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 36999999999999999999987543
No 357
>PRK13949 shikimate kinase; Provisional
Probab=93.11 E-value=0.074 Score=53.18 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=22.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-|.|+|++|+||||+++.+++...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998875
No 358
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=93.11 E-value=1.8 Score=46.23 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|.|||||++.++....
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~i~G~~~ 52 (256)
T TIGR03873 27 GSLTGLLGPNGSGKSTLLRLLAGALR 52 (256)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 46999999999999999999987643
No 359
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.09 E-value=2.2 Score=43.96 Aligned_cols=26 Identities=38% Similarity=0.441 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|.|..|.|||||.+.++.-..
T Consensus 24 Ge~~~l~G~nGsGKSTLl~~l~gl~~ 49 (211)
T cd03298 24 GEITAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36999999999999999999987643
No 360
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.09 E-value=0.33 Score=56.98 Aligned_cols=102 Identities=18% Similarity=0.210 Sum_probs=59.3
Q ss_pred HHHHHHHHhcC-CCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHH
Q 002972 167 SKFLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFL 245 (862)
Q Consensus 167 ~~~l~~LL~~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l 245 (862)
...+..+|..+ ..-.++.|.|.+|+|||||+.+++.....+- ..++|+.+. +...++.+..
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~g-e~~~y~s~e-------------Es~~~i~~~~---- 310 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANK-ERAILFAYE-------------ESRAQLLRNA---- 310 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEEee-------------CCHHHHHHHH----
Confidence 44567777653 3367999999999999999999988653321 245555542 2233333332
Q ss_pred HHhccccc------------cCCCCCCHHHHHHHHHHHhcC-CCeEEEEEcCCC
Q 002972 246 VQIGFWKK------------IKDENSDLEYLCCLLQEALYG-KSILILLDDVWE 286 (862)
Q Consensus 246 ~~lg~~~~------------~~~~~~~~~~l~~~l~~~L~~-kr~LLVLDDV~~ 286 (862)
..+|.... ......+.++....+.+.+.. +.-.+|+|.+..
T Consensus 311 ~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~ 364 (484)
T TIGR02655 311 YSWGIDFEEMEQQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSA 364 (484)
T ss_pred HHcCCChHHHhhCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 22221100 011122446666666666654 456789998753
No 361
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.09 E-value=0.26 Score=55.60 Aligned_cols=50 Identities=36% Similarity=0.332 Sum_probs=34.6
Q ss_pred HHHHHHHHhcC-CCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEee
Q 002972 167 SKFLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (862)
Q Consensus 167 ~~~l~~LL~~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 217 (862)
...+..+|..+ ..-.++.|.|.+|+|||||+.+++......- ..++|++.
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g-~~VlYvs~ 118 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-GKVLYVSG 118 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcC-CeEEEEEC
Confidence 34566666543 2357999999999999999999987654331 34555543
No 362
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.09 E-value=1.4 Score=52.44 Aligned_cols=46 Identities=30% Similarity=0.413 Sum_probs=32.6
Q ss_pred cCccHHHHHHHHHhcCC---------C---ceEEEEEcCCCCCHHHHHHHHHhCCCCC
Q 002972 162 PISSKSKFLRKLLEQEE---------T---HQVILIVGLSGIGKSCLARQVASDPPER 207 (862)
Q Consensus 162 g~~~~~~~l~~LL~~~~---------~---~~vI~I~G~gGiGKTtLA~~v~~~~~~~ 207 (862)
|+.+..+.+.+.+.-.. . ..=|.++|++|+|||-||.+++....-+
T Consensus 671 g~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~ 728 (952)
T KOG0735|consen 671 GLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR 728 (952)
T ss_pred cHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee
Confidence 55566666666654321 1 3458899999999999999999875433
No 363
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.09 E-value=0.064 Score=52.16 Aligned_cols=23 Identities=35% Similarity=0.683 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
++.|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998874
No 364
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=93.07 E-value=1.7 Score=48.82 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|+|||||.+.++--..
T Consensus 24 Ge~~~l~G~nGsGKSTLl~~iaGl~~ 49 (352)
T PRK11144 24 QGITAIFGRSGAGKTSLINAISGLTR 49 (352)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35899999999999999999987543
No 365
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.05 E-value=0.14 Score=52.33 Aligned_cols=26 Identities=42% Similarity=0.552 Sum_probs=24.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..+|+|-||=|+||||||+.++++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999887
No 366
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.04 E-value=1.6 Score=45.54 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|.|||||.+.++....
T Consensus 29 G~~~~i~G~nGsGKSTLl~~l~G~~~ 54 (229)
T cd03254 29 GETVAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 35899999999999999999987653
No 367
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.03 E-value=0.14 Score=57.58 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..+++++|+.|+||||++.+++....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999999987643
No 368
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=93.03 E-value=1.6 Score=47.95 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|.|||||++.++--..
T Consensus 33 Ge~v~iiG~nGsGKSTLl~~L~Gl~~ 58 (305)
T PRK13651 33 GEFIAIIGQTGSGKTTFIEHLNALLL 58 (305)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 35999999999999999999986543
No 369
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.01 E-value=0.11 Score=51.75 Aligned_cols=29 Identities=31% Similarity=0.552 Sum_probs=25.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcc
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPPERFV 209 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~~~F~ 209 (862)
+-|.++||.|+||||+.+.+++...-.|-
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~ 31 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFI 31 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcc
Confidence 35789999999999999999998876664
No 370
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=93.00 E-value=0.28 Score=47.81 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=18.4
Q ss_pred EEcCCCCCHHHHHHHHHhCC
Q 002972 185 IVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 185 I~G~gGiGKTtLA~~v~~~~ 204 (862)
|+|++|+||||+|+.++.+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999864
No 371
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=93.00 E-value=1.7 Score=48.66 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|+|||||++.++.-..
T Consensus 31 Gei~~iiG~nGsGKSTLlk~L~Gl~~ 56 (343)
T PRK11153 31 GEIFGVIGASGAGKSTLIRCINLLER 56 (343)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 35899999999999999999987653
No 372
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.00 E-value=0.081 Score=53.11 Aligned_cols=24 Identities=38% Similarity=0.641 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
++|+|+|++|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999999864
No 373
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=92.99 E-value=1.1 Score=49.90 Aligned_cols=84 Identities=14% Similarity=0.188 Sum_probs=47.4
Q ss_pred CCCeEEEEEcCCCc--hHHHHHhhcc---CCCceEE-EEccchhhhhh----cccccc-cCChhhHHHHHHHHhhhcccc
Q 002972 274 GKSILILLDDVWEQ--DIVERFAKLY---DNDCKYL-VTTRNEAVYEI----TEAEKV-ELSKDDIMEISKSILLYHSLL 342 (862)
Q Consensus 274 ~kr~LLVLDDV~~~--~~~~~l~~~~---~~gsrIL-vTTR~~~va~~----~~~~~~-~L~~~ea~~Lf~~~~~~~~~~ 342 (862)
+++-++|+|+++.. +..+.|...+ ++++.+| +|++...+... +....+ +++.++..+.+.+. +
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~----~-- 204 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ----G-- 204 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc----C--
Confidence 45668899999866 4566666444 4566555 55554444432 222222 67777777665442 1
Q ss_pred cCcchHHHHHHHHhhhCCchHHHHHH
Q 002972 343 AEEELPAAAESLLERCGHHPLTVAVM 368 (862)
Q Consensus 343 ~~~~l~~~~~~Iv~~cgGLPLAI~~i 368 (862)
.++ ...++..++|.|+....+
T Consensus 205 -~~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 205 -VAD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -CCh----HHHHHHHcCCCHHHHHHH
Confidence 111 123577889999755433
No 374
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=92.99 E-value=0.53 Score=52.30 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=20.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC
Q 002972 183 ILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 183 I~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
+++.|++|.||||+++.+.+...
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999997764
No 375
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.97 E-value=0.067 Score=54.32 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
+|+|.|.+|+||||||+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 376
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=92.97 E-value=0.39 Score=48.67 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=30.8
Q ss_pred HHHHhcC--CCeEEEEEcCCCc---hH----HHHHhhcc-C-CCceEEEEccchhhhhhcc
Q 002972 268 LQEALYG--KSILILLDDVWEQ---DI----VERFAKLY-D-NDCKYLVTTRNEAVYEITE 317 (862)
Q Consensus 268 l~~~L~~--kr~LLVLDDV~~~---~~----~~~l~~~~-~-~gsrILvTTR~~~va~~~~ 317 (862)
+...+.. ++-|+++|..-.. .. ...+...+ . .++.+|++|.+.++...+.
T Consensus 69 l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~ 129 (185)
T smart00534 69 TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLAD 129 (185)
T ss_pred HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhh
Confidence 4444443 7889999998533 11 12222222 3 3788999999988776543
No 377
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=92.96 E-value=0.41 Score=45.95 Aligned_cols=26 Identities=38% Similarity=0.484 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..-|.|+|..|+||+++|+.++..-.
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 45678999999999999999988654
No 378
>PRK00889 adenylylsulfate kinase; Provisional
Probab=92.95 E-value=0.093 Score=52.55 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..+|+|+|++|+||||+|+.++....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999999998654
No 379
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=92.94 E-value=2.2 Score=46.82 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=32.0
Q ss_pred HHHHHHhcCCCeEEEEEcCCCc-------hHHHHHhhccCCCceEEEEccchhhhh
Q 002972 266 CLLQEALYGKSILILLDDVWEQ-------DIVERFAKLYDNDCKYLVTTRNEAVYE 314 (862)
Q Consensus 266 ~~l~~~L~~kr~LLVLDDV~~~-------~~~~~l~~~~~~gsrILvTTR~~~va~ 314 (862)
-.+...+-.++-+++||..-.. ..|+.+.. +..+..||+||.+.+.+.
T Consensus 142 v~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~-~~~~~tiii~sH~l~~~~ 196 (301)
T TIGR03522 142 VGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKN-IGKDKTIILSTHIMQEVE 196 (301)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH-hcCCCEEEEEcCCHHHHH
Confidence 3456667778889999987543 22344443 344678999999886443
No 380
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=92.93 E-value=0.065 Score=56.01 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
+|+|.|.+|+||||+|+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998764
No 381
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=92.92 E-value=1.1 Score=52.62 Aligned_cols=26 Identities=35% Similarity=0.533 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|.|||||++.++-...
T Consensus 50 GEivgIiGpNGSGKSTLLkiLaGLl~ 75 (549)
T PRK13545 50 GEIVGIIGLNGSGKSTLSNLIAGVTM 75 (549)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 45999999999999999999997654
No 382
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.89 E-value=0.076 Score=51.64 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=20.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC
Q 002972 183 ILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 183 I~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
|.|+|++|+||||+|+.++....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999998764
No 383
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=92.89 E-value=1.8 Score=48.35 Aligned_cols=26 Identities=38% Similarity=0.405 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|+.|.|||||.+-++.-.+
T Consensus 31 Gei~gIiG~sGaGKSTLlr~I~gl~~ 56 (343)
T TIGR02314 31 GQIYGVIGASGAGKSTLIRCVNLLER 56 (343)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35899999999999999999987554
No 384
>PTZ00088 adenylate kinase 1; Provisional
Probab=92.88 E-value=0.54 Score=49.44 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-|.|.|++|+||||+|+.+++...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999998753
No 385
>PRK00279 adk adenylate kinase; Reviewed
Probab=92.88 E-value=0.39 Score=49.91 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.|.|+|++|+||||+|+.++....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987753
No 386
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=92.87 E-value=2.3 Score=45.29 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-.+++|+|..|.|||||.+.++--.
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (255)
T PRK11231 28 GKITALIGPNGCGKSTLLKCFARLL 52 (255)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc
Confidence 3589999999999999999998754
No 387
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=92.87 E-value=0.046 Score=51.54 Aligned_cols=27 Identities=33% Similarity=0.607 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCcc
Q 002972 183 ILIVGLSGIGKSCLARQVASDPPERFV 209 (862)
Q Consensus 183 I~I~G~gGiGKTtLA~~v~~~~~~~F~ 209 (862)
|.|+|.+|+||||+|+.++......|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCcee
Confidence 679999999999999999998877664
No 388
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=92.84 E-value=0.063 Score=49.24 Aligned_cols=23 Identities=52% Similarity=0.699 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC
Q 002972 183 ILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 183 I~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
|-|+|.+|+|||+||..++.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999887654
No 389
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=92.81 E-value=0.48 Score=51.08 Aligned_cols=100 Identities=20% Similarity=0.155 Sum_probs=54.5
Q ss_pred HHHHHhcC-CCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHh
Q 002972 170 LRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQI 248 (862)
Q Consensus 170 l~~LL~~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~l 248 (862)
+..+|... +.-+++=|+|+.|+||||+|.+++-.....- ..+.|+|-..- -.+.....+.... +..+
T Consensus 49 LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g-~~a~fIDtE~~--------l~p~r~~~l~~~~---~d~l 116 (279)
T COG0468 49 LDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPG-GKAAFIDTEHA--------LDPERAKQLGVDL---LDNL 116 (279)
T ss_pred HHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCC-CeEEEEeCCCC--------CCHHHHHHHHHhh---hcce
Confidence 44555532 3368999999999999999999875544222 14566654211 1223333343331 1111
Q ss_pred ccccccCCCCCCHH---HHHHHHHHHhcCCCeEEEEEcCCC
Q 002972 249 GFWKKIKDENSDLE---YLCCLLQEALYGKSILILLDDVWE 286 (862)
Q Consensus 249 g~~~~~~~~~~~~~---~l~~~l~~~L~~kr~LLVLDDV~~ 286 (862)
- ...+.+.+ ++++.+......+--|+|+|.|-.
T Consensus 117 ~-----v~~~~~~e~q~~i~~~~~~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 117 L-----VSQPDTGEQQLEIAEKLARSGAEKIDLLVVDSVAA 152 (279)
T ss_pred e-----EecCCCHHHHHHHHHHHHHhccCCCCEEEEecCcc
Confidence 1 11222333 344444444444567999999853
No 390
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.80 E-value=0.22 Score=51.75 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q 002972 180 HQVILIVGLSGIGKSCLARQVAS 202 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~ 202 (862)
.+++.|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999873
No 391
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=92.80 E-value=0.095 Score=51.47 Aligned_cols=28 Identities=43% Similarity=0.533 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPER 207 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~ 207 (862)
..+|-|+|.+|+||||||+++.+.....
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~ 29 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR 29 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3589999999999999999999887543
No 392
>PHA00729 NTP-binding motif containing protein
Probab=92.80 E-value=0.1 Score=54.33 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
+...|.|+|.+|+||||||..+++..
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45578999999999999999999864
No 393
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=92.78 E-value=0.59 Score=49.18 Aligned_cols=25 Identities=36% Similarity=0.413 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..++.|.|.+|+||||||.+++...
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~ 48 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGF 48 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999987776644
No 394
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=92.76 E-value=1.7 Score=45.61 Aligned_cols=25 Identities=36% Similarity=0.406 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-.+++|+|..|.|||||++.++--.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 25 GERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4599999999999999999998654
No 395
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.76 E-value=0.45 Score=55.27 Aligned_cols=52 Identities=31% Similarity=0.227 Sum_probs=36.3
Q ss_pred cHHHHHHHHHhcC-CCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEee
Q 002972 165 SKSKFLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (862)
Q Consensus 165 ~~~~~l~~LL~~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 217 (862)
.-...++.+|..+ ..-.++.|.|.+|+|||||+.+++.....+ ...++|++.
T Consensus 78 TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~-g~kvlYvs~ 130 (454)
T TIGR00416 78 SGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKN-QMKVLYVSG 130 (454)
T ss_pred cCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEC
Confidence 3445677777643 335799999999999999999998765432 134666544
No 396
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.75 E-value=0.077 Score=53.56 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
+|+|.|.+|+||||||..+.....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998764
No 397
>PRK05439 pantothenate kinase; Provisional
Probab=92.72 E-value=0.14 Score=56.13 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=28.0
Q ss_pred HHHHHHh--cCCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 169 FLRKLLE--QEETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 169 ~l~~LL~--~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+..++. ..+.+-+|+|.|.+|+||||+|+.+.....
T Consensus 73 ~~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 73 ALEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred HHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444554 234578999999999999999999987553
No 398
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.68 E-value=0.4 Score=49.47 Aligned_cols=44 Identities=14% Similarity=0.183 Sum_probs=29.4
Q ss_pred CCCeEEEEEcCCC---chH-----HHHHhhccCCCceEEEEccchhhhhhcc
Q 002972 274 GKSILILLDDVWE---QDI-----VERFAKLYDNDCKYLVTTRNEAVYEITE 317 (862)
Q Consensus 274 ~kr~LLVLDDV~~---~~~-----~~~l~~~~~~gsrILvTTR~~~va~~~~ 317 (862)
.++-|+++|.... ..+ +..+......|+.+|++|.+..++....
T Consensus 107 ~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 107 DGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAILG 158 (204)
T ss_pred CCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhh
Confidence 5678999999843 222 2222233346889999999998887544
No 399
>PRK13946 shikimate kinase; Provisional
Probab=92.62 E-value=0.095 Score=53.09 Aligned_cols=27 Identities=33% Similarity=0.546 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
.+.|.++|++|+||||+++.+++...-
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~ 36 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGL 36 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 457999999999999999999998753
No 400
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.58 E-value=0.18 Score=53.32 Aligned_cols=41 Identities=27% Similarity=0.393 Sum_probs=31.2
Q ss_pred cHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 165 SKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 165 ~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
...+.+..+....++..+|+|.|.||.|||||..++....+
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~ 54 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELR 54 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHh
Confidence 44566777776666788999999999999999998876654
No 401
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.55 E-value=1.6 Score=46.56 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEcCCCc-------hHHHHHhhcc-CCCceEEEEccchhhhhhcccc
Q 002972 261 LEYLCCLLQEALYGKSILILLDDVWEQ-------DIVERFAKLY-DNDCKYLVTTRNEAVYEITEAE 319 (862)
Q Consensus 261 ~~~l~~~l~~~L~~kr~LLVLDDV~~~-------~~~~~l~~~~-~~gsrILvTTR~~~va~~~~~~ 319 (862)
-+...-.+...|..+.=+|+||.--+. +.++.+...- ..|..||+++.+.+.|...+.+
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~ 208 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADH 208 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 344445677778888889999976433 2233333322 3578899999999887755443
No 402
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.52 E-value=0.097 Score=53.79 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..+|+|+|++|+||||||+.++....
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46899999999999999999998653
No 403
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=92.51 E-value=0.64 Score=52.01 Aligned_cols=102 Identities=26% Similarity=0.286 Sum_probs=60.8
Q ss_pred cCccHHHHHHHHHhcCC-CceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHH
Q 002972 162 PISSKSKFLRKLLEQEE-THQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARK 240 (862)
Q Consensus 162 g~~~~~~~l~~LL~~~~-~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~ 240 (862)
++..-..++...|..+- .-.+|.|-|-+|||||||..+++.+...+. .++|+. -++...+
T Consensus 74 Ri~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~--~vLYVs-------------GEES~~Q---- 134 (456)
T COG1066 74 RISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG--KVLYVS-------------GEESLQQ---- 134 (456)
T ss_pred cccCChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC--cEEEEe-------------CCcCHHH----
Confidence 34455667777776531 246899999999999999999999887554 466543 2222222
Q ss_pred HHHHHHHhcccc-ccC-CCCCCHHHHHHHHHHHhcCCCeEEEEEcCC
Q 002972 241 ISKFLVQIGFWK-KIK-DENSDLEYLCCLLQEALYGKSILILLDDVW 285 (862)
Q Consensus 241 i~~~l~~lg~~~-~~~-~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~ 285 (862)
+.-....++... ... ....+++++.+.+.+ .+.-++|+|-+.
T Consensus 135 iklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~---~~p~lvVIDSIQ 178 (456)
T COG1066 135 IKLRADRLGLPTNNLYLLAETNLEDIIAELEQ---EKPDLVVIDSIQ 178 (456)
T ss_pred HHHHHHHhCCCccceEEehhcCHHHHHHHHHh---cCCCEEEEeccc
Confidence 222233344211 000 112255555444443 688999999885
No 404
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=92.50 E-value=0.84 Score=45.41 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=26.7
Q ss_pred ccHHHHHHHHHhcCCCceEEEEEcCCCCCHHH-HHHHHHhCCCC
Q 002972 164 SSKSKFLRKLLEQEETHQVILIVGLSGIGKSC-LARQVASDPPE 206 (862)
Q Consensus 164 ~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTt-LA~~v~~~~~~ 206 (862)
+...+.+..++... +.+.|.|..|.|||+ ++..+++....
T Consensus 11 ~~Q~~~~~~~~~~~---~~~~i~~~~GsGKT~~~~~~~~~~~~~ 51 (201)
T smart00487 11 PYQKEAIEALLSGL---RDVILAAPTGSGKTLAALLPALEALKR 51 (201)
T ss_pred HHHHHHHHHHHcCC---CcEEEECCCCCchhHHHHHHHHHHhcc
Confidence 34455555555432 688999999999999 55555555443
No 405
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.49 E-value=0.32 Score=54.72 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
+++|+++|.+|+||||++..++....
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFH 266 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 57999999999999999999987554
No 406
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.48 E-value=0.5 Score=51.06 Aligned_cols=27 Identities=33% Similarity=0.578 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..++|+++|++|+||||++..++....
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~ 97 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK 97 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 468999999999999999999987664
No 407
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=92.48 E-value=0.53 Score=52.65 Aligned_cols=49 Identities=29% Similarity=0.239 Sum_probs=33.2
Q ss_pred HHHHHHhcCCCeEEEEEcCCCc-------hHHHHHhhccCCCceEEEEccchhhhh
Q 002972 266 CLLQEALYGKSILILLDDVWEQ-------DIVERFAKLYDNDCKYLVTTRNEAVYE 314 (862)
Q Consensus 266 ~~l~~~L~~kr~LLVLDDV~~~-------~~~~~l~~~~~~gsrILvTTR~~~va~ 314 (862)
-.+...+-.++=+|+||..-.. ..|+.+......|..||+||.+.+...
T Consensus 181 v~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~ 236 (340)
T PRK13536 181 LTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAE 236 (340)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHH
Confidence 3456667778889999987543 234444443345788999999876554
No 408
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=92.48 E-value=0.34 Score=58.19 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.++..|.|.+|.||||++..+....
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l 191 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAAL 191 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3589999999999999998887654
No 409
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.46 E-value=0.11 Score=52.76 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+++|+|++|+|||||++.++....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4789999999999999999987654
No 410
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=92.41 E-value=0.59 Score=52.59 Aligned_cols=26 Identities=46% Similarity=0.555 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|+|||||.+.++--.+
T Consensus 30 Ge~~~llG~sGsGKSTLLr~iaGl~~ 55 (356)
T PRK11650 30 GEFIVLVGPSGCGKSTLLRMVAGLER 55 (356)
T ss_pred CCEEEEECCCCCcHHHHHHHHHCCCC
Confidence 35899999999999999999987543
No 411
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.40 E-value=0.083 Score=52.17 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 002972 183 ILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 183 I~I~G~gGiGKTtLA~~v~~~~ 204 (862)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999876
No 412
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.38 E-value=1.5 Score=45.05 Aligned_cols=56 Identities=13% Similarity=0.159 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCCCeEEEEEcCCC---chHHHHHh----hccCCCceEEEEccchhhhhhcc
Q 002972 262 EYLCCLLQEALYGKSILILLDDVWE---QDIVERFA----KLYDNDCKYLVTTRNEAVYEITE 317 (862)
Q Consensus 262 ~~l~~~l~~~L~~kr~LLVLDDV~~---~~~~~~l~----~~~~~gsrILvTTR~~~va~~~~ 317 (862)
++..-.|.+.|.=++=++.+|..-+ ++...... ..-..|-..|+.|.+-..|....
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~Va 203 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVA 203 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhh
Confidence 3344457777888888999999864 44443333 33356878888888876666443
No 413
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.36 E-value=0.31 Score=56.53 Aligned_cols=51 Identities=31% Similarity=0.268 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcC-CCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEee
Q 002972 166 KSKFLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (862)
Q Consensus 166 ~~~~l~~LL~~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 217 (862)
-...++.+|..+ ..-.++.|.|.+|+|||||+.+++.....+ ...++|++.
T Consensus 65 Gi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs~ 116 (446)
T PRK11823 65 GIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVSG 116 (446)
T ss_pred CcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEc
Confidence 345677777653 235699999999999999999998765422 234666554
No 414
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.35 E-value=0.13 Score=52.81 Aligned_cols=28 Identities=32% Similarity=0.412 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 178 ETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 178 ~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
....+|+|+|++|+||||||+.+.....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3467999999999999999999998653
No 415
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.34 E-value=0.11 Score=52.12 Aligned_cols=25 Identities=40% Similarity=0.594 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..|.|+|+.|+||||+|+.+++...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 4699999999999999999998764
No 416
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.33 E-value=2 Score=46.50 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|.|||||++.++....
T Consensus 30 Ge~~~i~G~NGsGKSTLl~~l~Gl~~ 55 (277)
T PRK13652 30 NSRIAVIGPNGAGKSTLFRHFNGILK 55 (277)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45999999999999999999997643
No 417
>PRK14528 adenylate kinase; Provisional
Probab=92.33 E-value=0.68 Score=46.96 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
+.|.|.|++|+||||+|+.++....
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~ 26 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLS 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4588999999999999999987653
No 418
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=92.33 E-value=1.9 Score=51.30 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|+|||||.+.++....
T Consensus 27 Ge~~~liG~NGsGKSTLl~~l~Gl~~ 52 (530)
T PRK15064 27 GNRYGLIGANGCGKSTFMKILGGDLE 52 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999997653
No 419
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=92.31 E-value=0.35 Score=54.32 Aligned_cols=108 Identities=14% Similarity=0.144 Sum_probs=59.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCccC--ceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHhccccccCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERFVG--GAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDE 257 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~lg~~~~~~~~ 257 (862)
...|.|+|+.|+||||++..+.+......+. .++. +.. ..+.....+.... .... ....
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt--~Ed---------piE~~~~~~~~~~-~~v~-------Q~~v 194 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILT--YEA---------PIEFVYDEIETIS-ASVC-------QSEI 194 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEE--eCC---------CceEecccccccc-ceee-------eeec
Confidence 4699999999999999999998765322221 1221 100 0111111110000 0000 0001
Q ss_pred CCCHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHhhccCCCceEEEE
Q 002972 258 NSDLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLYDNDCKYLVT 306 (862)
Q Consensus 258 ~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~~~~~l~~~~~~gsrILvT 306 (862)
..+.......++..|...+-.+++..+.+.+..+........|-.++-|
T Consensus 195 ~~~~~~~~~~l~~aLR~~Pd~i~vGEiRd~et~~~al~aa~tGh~v~tT 243 (358)
T TIGR02524 195 PRHLNNFAAGVRNALRRKPHAILVGEARDAETISAALEAALTGHPVYTT 243 (358)
T ss_pred cccccCHHHHHHHHhccCCCEEeeeeeCCHHHHHHHHHHHHcCCcEEEe
Confidence 1122234566777888899999999999998887555444556554444
No 420
>PRK13975 thymidylate kinase; Provisional
Probab=92.28 E-value=0.11 Score=53.03 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
..|+|.|+.|+||||+|+.+++....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999998763
No 421
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=92.28 E-value=1 Score=54.40 Aligned_cols=25 Identities=36% Similarity=0.389 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-..++|+|..|.|||||++.+....
T Consensus 376 G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 376 GQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999998766
No 422
>PRK04182 cytidylate kinase; Provisional
Probab=92.24 E-value=0.12 Score=51.65 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
+|.|.|+.|+||||+|+.+++...
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 789999999999999999998764
No 423
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=92.23 E-value=2.3 Score=48.20 Aligned_cols=26 Identities=38% Similarity=0.519 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|+|||||.+.++--.+
T Consensus 29 Ge~~~l~G~nGsGKSTLL~~iaGl~~ 54 (369)
T PRK11000 29 GEFVVFVGPSGCGKSTLLRMIAGLED 54 (369)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 35899999999999999999987543
No 424
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=92.23 E-value=2.4 Score=48.39 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|+|||||.+.++.-..
T Consensus 54 Gei~~LvG~NGsGKSTLLr~I~Gl~~ 79 (400)
T PRK10070 54 GEIFVIMGLSGSGKSTMVRLLNRLIE 79 (400)
T ss_pred CCEEEEECCCCchHHHHHHHHHcCCC
Confidence 35899999999999999999987653
No 425
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=92.18 E-value=0.35 Score=55.64 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=33.5
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
...||.++.--+...+.-.-+--..|++||+.|+|||||.+-++-+..
T Consensus 394 nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~ 441 (614)
T KOG0927|consen 394 NVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ 441 (614)
T ss_pred ccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc
Confidence 344465655545555544433346799999999999999999987753
No 426
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=92.18 E-value=0.54 Score=52.85 Aligned_cols=101 Identities=16% Similarity=0.256 Sum_probs=57.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHhccccccCCCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDENS 259 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~lg~~~~~~~~~~ 259 (862)
++=+=|||..|.|||-|+-.+|+....+-..++ .-...+..+.+.+... .....
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~----------------HFh~Fm~~vh~~l~~~----------~~~~~ 115 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRV----------------HFHEFMLDVHSRLHQL----------RGQDD 115 (362)
T ss_pred CceEEEECCCCCchhHHHHHHHHhCCccccccc----------------cccHHHHHHHHHHHHH----------hCCCc
Confidence 566789999999999999999987653211100 1123344455554331 11111
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEcCC--Cch---HHHHHhhc-cCCCceEEEEccchh
Q 002972 260 DLEYLCCLLQEALYGKSILILLDDVW--EQD---IVERFAKL-YDNDCKYLVTTRNEA 311 (862)
Q Consensus 260 ~~~~l~~~l~~~L~~kr~LLVLDDV~--~~~---~~~~l~~~-~~~gsrILvTTR~~~ 311 (862)
. ...+.+.+.++..||.||.+. |.. .+..+... +..|. |||+|-|..
T Consensus 116 ~----l~~va~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~~ 168 (362)
T PF03969_consen 116 P----LPQVADELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNRP 168 (362)
T ss_pred c----HHHHHHHHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCCC
Confidence 2 334445566777899999864 332 23444433 34454 555555553
No 427
>PRK14530 adenylate kinase; Provisional
Probab=92.16 E-value=0.1 Score=54.26 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.|.|+|++|+||||+|+.++....
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999988763
No 428
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.16 E-value=0.12 Score=52.94 Aligned_cols=25 Identities=24% Similarity=0.538 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..+|.|.|.+|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999875
No 429
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.10 E-value=0.02 Score=62.98 Aligned_cols=49 Identities=16% Similarity=0.160 Sum_probs=34.0
Q ss_pred HHHHHhccCCcccEEEecccccccccChhhccccCCCcccccccchhHhhh
Q 002972 555 AILQALMASKSISELEVSRICFSGILGPRIADLISRDSQSLTVVSAEAITN 605 (862)
Q Consensus 555 ~~~~~l~~~~~LrvLdLs~~~i~~~LP~~I~~L~~Lr~L~l~~s~~~~i~~ 605 (862)
..+..+|.+++|.+||||+++|+. ||.++|+| ||++|-+.+-..+.|..
T Consensus 266 e~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr 314 (565)
T KOG0472|consen 266 EVPDEICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRR 314 (565)
T ss_pred cCchHHHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHH
Confidence 356666777777777777777777 77777777 77777776666555543
No 430
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=92.07 E-value=1.5 Score=53.98 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-..++|+|..|+|||||++.+..-..
T Consensus 491 G~~iaIvG~sGsGKSTLlklL~gl~~ 516 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLGLYQ 516 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999986543
No 431
>PRK14527 adenylate kinase; Provisional
Probab=92.06 E-value=0.13 Score=52.44 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
...+|.|+|++|+||||+|+.+++...
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999987764
No 432
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=92.05 E-value=1.5 Score=44.74 Aligned_cols=25 Identities=36% Similarity=0.481 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-.+++|.|..|.|||||.+.++.-.
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998765
No 433
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=92.01 E-value=2.3 Score=50.30 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-.+++|+|..|+|||||.+.++--.
T Consensus 30 Ge~~~l~G~NGsGKSTLl~~l~G~~ 54 (501)
T PRK10762 30 GRVMALVGENGAGKSTMMKVLTGIY 54 (501)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4699999999999999999998754
No 434
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.00 E-value=0.16 Score=51.55 Aligned_cols=26 Identities=19% Similarity=0.426 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
+.++|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 35789999999999999999998865
No 435
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=91.99 E-value=0.15 Score=51.07 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
...+++|+|..|+|||||+..+......
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4679999999999999999999977653
No 436
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=91.96 E-value=4.2 Score=47.10 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=27.2
Q ss_pred HHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 169 FLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 169 ~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+..++.+-..-.++.|.|.+|+|||++|.+++.+..
T Consensus 184 ~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a 220 (434)
T TIGR00665 184 DLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAA 220 (434)
T ss_pred hhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHH
Confidence 3444554323356999999999999999999987643
No 437
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=91.96 E-value=1 Score=49.58 Aligned_cols=32 Identities=13% Similarity=0.201 Sum_probs=26.7
Q ss_pred CeEEEEEcCCCc--hHHHHHhhccCCCceEEEEc
Q 002972 276 SILILLDDVWEQ--DIVERFAKLYDNDCKYLVTT 307 (862)
Q Consensus 276 r~LLVLDDV~~~--~~~~~l~~~~~~gsrILvTT 307 (862)
+-++|+|...+. .+...+..-.++||||+.|-
T Consensus 352 ~~FiIIDEaQNLTpheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 352 DSFIIIDEAQNLTPHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred cceEEEehhhccCHHHHHHHHHhccCCCEEEEcC
Confidence 578999999876 57777777779999999985
No 438
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=91.95 E-value=0.22 Score=47.56 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
...+|.+.|.-|.||||+++.+++...
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 346999999999999999999998764
No 439
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.93 E-value=2.3 Score=44.77 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|.|||||.+.++-...
T Consensus 25 Ge~~~i~G~nG~GKStLl~~l~G~~~ 50 (235)
T cd03299 25 GDYFVILGPTGSGKSVLLETIAGFIK 50 (235)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 45999999999999999999987543
No 440
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=91.91 E-value=0.12 Score=50.98 Aligned_cols=20 Identities=30% Similarity=0.657 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 002972 182 VILIVGLSGIGKSCLARQVA 201 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~ 201 (862)
.|+|.|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 68999999999999999997
No 441
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=91.89 E-value=0.15 Score=47.15 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC
Q 002972 183 ILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 183 I~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
|.|+|..|+|||||.+.++....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999997653
No 442
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=91.88 E-value=0.66 Score=52.16 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|+.|+|||||.+.++--..
T Consensus 30 Ge~~~l~GpsGsGKSTLLr~iaGl~~ 55 (353)
T TIGR03265 30 GEFVCLLGPSGCGKTTLLRIIAGLER 55 (353)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Confidence 35999999999999999999987543
No 443
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=91.87 E-value=2.4 Score=50.18 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|+|||||.+.++.-..
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (506)
T PRK13549 31 GEIVSLCGENGAGKSTLMKVLSGVYP 56 (506)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999987554
No 444
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=91.85 E-value=0.15 Score=49.39 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
++|.|+|..|+|||||++.+.+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~ 25 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK 25 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4899999999999999999998775
No 445
>PRK13409 putative ATPase RIL; Provisional
Probab=91.85 E-value=2.2 Score=51.46 Aligned_cols=135 Identities=18% Similarity=0.217 Sum_probs=66.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeee-eeecccccC---CCchHHHHHH------HHHHHHHHHhc
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQ-WCSRAACNG---SKSDYQKRLA------RKISKFLVQIG 249 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~-w~~~~~~~~---s~~~~~~~l~------~~i~~~l~~lg 249 (862)
-.+++|+|..|+|||||++.++-..+.. .+.+++++.. +++...... +......... ....+.+..++
T Consensus 365 Geiv~l~G~NGsGKSTLlk~L~Gl~~p~--~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~ 442 (590)
T PRK13409 365 GEVIGIVGPNGIGKTTFAKLLAGVLKPD--EGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQ 442 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCC
Confidence 4599999999999999999999765421 2233322211 111110000 0000110000 01122233333
Q ss_pred cccccC---CCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCc---hH----HHHHhhccC-CCceEEEEccchhhhhhc
Q 002972 250 FWKKIK---DENSDLEYLCCLLQEALYGKSILILLDDVWEQ---DI----VERFAKLYD-NDCKYLVTTRNEAVYEIT 316 (862)
Q Consensus 250 ~~~~~~---~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~---~~----~~~l~~~~~-~gsrILvTTR~~~va~~~ 316 (862)
...... ..-+.-+...-.+...+....=+++||.--.. .. ++.+..... .|..||++|.+...+...
T Consensus 443 l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~ 520 (590)
T PRK13409 443 LERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYI 520 (590)
T ss_pred CHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 211011 11122233334466677778889999987533 22 222223222 367889999887765543
No 446
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=91.84 E-value=0.72 Score=51.81 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|+|||||.+.++--..
T Consensus 32 Ge~~~llGpsGsGKSTLLr~IaGl~~ 57 (351)
T PRK11432 32 GTMVTLLGPSGCGKTTVLRLVAGLEK 57 (351)
T ss_pred CCEEEEECCCCCcHHHHHHHHHCCCC
Confidence 35999999999999999999986543
No 447
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=91.84 E-value=0.12 Score=52.13 Aligned_cols=30 Identities=40% Similarity=0.695 Sum_probs=26.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCcc
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERFV 209 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~ 209 (862)
.++|.|+|++|+|||||+..+......+|.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~ 31 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFG 31 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccc
Confidence 468999999999999999999998877773
No 448
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=91.83 E-value=0.4 Score=53.80 Aligned_cols=25 Identities=40% Similarity=0.614 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHH-HHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSC-LARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTt-LA~~v~~~~ 204 (862)
.++|+++|+.|+|||| ||+..++-.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 6899999999999996 666665543
No 449
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=91.79 E-value=0.22 Score=54.08 Aligned_cols=26 Identities=31% Similarity=0.317 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.+.+|+|.|..|+||||+|+.+..-.
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998775544
No 450
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=91.79 E-value=1.4 Score=44.88 Aligned_cols=26 Identities=27% Similarity=0.617 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
+.|-+.|.+|+||||+|++++.-.++
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHH
Confidence 46788999999999999999986653
No 451
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=91.77 E-value=0.18 Score=59.14 Aligned_cols=48 Identities=25% Similarity=0.337 Sum_probs=36.7
Q ss_pred CCCcCccHHHHHHHHHh----c-CCCceEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 159 QGYPISSKSKFLRKLLE----Q-EETHQVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 159 ~~~g~~~~~~~l~~LL~----~-~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
..||+++..+.+...+. . +..-+++.++|++|+||||||+.+++-...
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 46798877776666552 1 234679999999999999999999986543
No 452
>PTZ00035 Rad51 protein; Provisional
Probab=91.75 E-value=0.87 Score=50.81 Aligned_cols=50 Identities=22% Similarity=0.170 Sum_probs=34.1
Q ss_pred HHHHHHHhcC-CCceEEEEEcCCCCCHHHHHHHHHhCCC-----CCccCceEEEee
Q 002972 168 KFLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPP-----ERFVGGAVELGF 217 (862)
Q Consensus 168 ~~l~~LL~~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~-----~~F~~~~~~~~~ 217 (862)
..+..+|..+ ..-.++.|+|.+|+|||||+..++-... ..-...++|++.
T Consensus 105 ~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdt 160 (337)
T PTZ00035 105 TQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDT 160 (337)
T ss_pred HHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEc
Confidence 3566677653 2367999999999999999999874332 112345667664
No 453
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=91.75 E-value=0.99 Score=44.56 Aligned_cols=25 Identities=24% Similarity=0.185 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..|-|++..|.||||+|...+-+..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~ 27 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL 27 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3677888889999999998876654
No 454
>PLN02348 phosphoribulokinase
Probab=91.73 E-value=0.31 Score=54.81 Aligned_cols=40 Identities=25% Similarity=0.223 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 166 KSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 166 ~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
....+.......+.+.+|+|.|.+|+||||+|+.+.+...
T Consensus 35 ~~~~~~~~~~~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 35 AASSVVVALAADDGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred hhHHHHHhhccCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3344444444555688999999999999999999998764
No 455
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=91.73 E-value=0.91 Score=47.29 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=38.8
Q ss_pred cCCccccccccCCCcCccHHHHHHHHHh---cCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCcc
Q 002972 148 EVPTRLKVKAEQGYPISSKSKFLRKLLE---QEETHQVILIVGLSGIGKSCLARQVASDPPERFV 209 (862)
Q Consensus 148 ~~~~~~~~~~~~~~g~~~~~~~l~~LL~---~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~ 209 (862)
++|.+.++.-...+|.+...+.+..=.. .+-..--|.+||--|+|||+|++++.+....+..
T Consensus 50 pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~gl 114 (287)
T COG2607 50 PVPDPDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGL 114 (287)
T ss_pred CCCCCCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCC
Confidence 3444333333445577755554433221 1223456889999999999999999998776543
No 456
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=91.67 E-value=0.19 Score=50.63 Aligned_cols=38 Identities=16% Similarity=0.165 Sum_probs=32.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEee
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 217 (862)
...|.|-|++|+|||+|..+.+++.+++|...++-.|+
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di 50 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDI 50 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEecee
Confidence 47899999999999999999999999889877765544
No 457
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=91.66 E-value=0.15 Score=50.55 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
+|+|.|+.|+||||+|+.+.+...
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg 25 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 799999999999999999998653
No 458
>PRK08760 replicative DNA helicase; Provisional
Probab=91.56 E-value=0.74 Score=53.85 Aligned_cols=38 Identities=13% Similarity=0.248 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 168 KFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 168 ~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..+..++.+-..-.++.|-|.+|+|||++|..++....
T Consensus 217 ~~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a 254 (476)
T PRK08760 217 NDFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAA 254 (476)
T ss_pred HHHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHH
Confidence 34455554433456899999999999999999987653
No 459
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=91.55 E-value=2.7 Score=49.79 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-.+++|+|..|+|||||.+.++.-.
T Consensus 31 Ge~~~liG~nGsGKSTLl~~i~Gl~ 55 (510)
T PRK09700 31 GEIHALLGENGAGKSTLMKVLSGIH 55 (510)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCCc
Confidence 4699999999999999999998754
No 460
>PRK14526 adenylate kinase; Provisional
Probab=91.52 E-value=2 Score=44.55 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC
Q 002972 183 ILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 183 I~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
|.|+|++|+||||+|+.++....
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~ 25 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELN 25 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67999999999999999987653
No 461
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.52 E-value=0.56 Score=53.32 Aligned_cols=25 Identities=28% Similarity=0.495 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..+++++|++|+||||++.+++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998643
No 462
>PLN02318 phosphoribulokinase/uridine kinase
Probab=91.51 E-value=0.23 Score=58.41 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=27.5
Q ss_pred HHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 170 LRKLLEQEETHQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 170 l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
+..+....+++.+|+|.|.+|+||||||+.+....
T Consensus 55 ~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 55 CQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred HHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 33333344568899999999999999999998764
No 463
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=91.51 E-value=0.76 Score=52.11 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-.+++|+|..|+|||||.+.++--.
T Consensus 45 Ge~~~llGpsGsGKSTLLr~IaGl~ 69 (377)
T PRK11607 45 GEIFALLGASGCGKSTLLRMLAGFE 69 (377)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3599999999999999999998654
No 464
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=91.48 E-value=0.14 Score=50.09 Aligned_cols=24 Identities=46% Similarity=0.621 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
+|.|+|.+|+||||||+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999988653
No 465
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=91.47 E-value=0.23 Score=51.93 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHh
Q 002972 179 THQVILIVGLSGIGKSCLARQVAS 202 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~ 202 (862)
+.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHH
Confidence 357999999999999999888763
No 466
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=91.46 E-value=1.5 Score=45.01 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 002972 181 QVILIVGLSGIGKSCLARQVA 201 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~ 201 (862)
.+++|+|..|.|||||.+.++
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEEEEECCCCCccHHHHHHHH
Confidence 699999999999999999998
No 467
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=91.44 E-value=1.2 Score=49.73 Aligned_cols=50 Identities=26% Similarity=0.177 Sum_probs=33.9
Q ss_pred HHHHHHhcC-CCceEEEEEcCCCCCHHHHHHHHHhCCC--C---CccCceEEEeee
Q 002972 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPP--E---RFVGGAVELGFG 218 (862)
Q Consensus 169 ~l~~LL~~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~--~---~F~~~~~~~~~~ 218 (862)
.+..+|..+ ..-.++-|+|.+|+|||+|+..++-... . .-...++|++..
T Consensus 111 ~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE 166 (342)
T PLN03186 111 ELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTE 166 (342)
T ss_pred HHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECC
Confidence 455666553 3367889999999999999998874322 1 122367777763
No 468
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=91.43 E-value=2.8 Score=46.22 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=27.3
Q ss_pred cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHH
Q 002972 322 ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTV 365 (862)
Q Consensus 322 ~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI 365 (862)
+++.+|+..++.-.....-.......+...+++.-..+|+|--+
T Consensus 263 ~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 263 RLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred CCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 68999998887655443332222333456667777778988643
No 469
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=91.40 E-value=5.7 Score=47.00 Aligned_cols=138 Identities=20% Similarity=0.250 Sum_probs=67.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeee---eeeeccc----ccCCCchHHHHH-----HHHHHHHHHH
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFG---QWCSRAA----CNGSKSDYQKRL-----ARKISKFLVQ 247 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~---~w~~~~~----~~~s~~~~~~~l-----~~~i~~~l~~ 247 (862)
-..|+|+|+.|+|||||.+.+....... .+.+...-. .+..... ...+.-+...+. -..+...|..
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~--~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~ 425 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPL--SGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGR 425 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccC--CceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHH
Confidence 3579999999999999999996655322 111110000 0110000 000000000000 1233333443
Q ss_pred hccccccCC----CCCCHHHHHHHHHHHhcCCCeEEEEEcCCCc---hHHHHHhhcc-CCCceEEEEccchhhhhhcccc
Q 002972 248 IGFWKKIKD----ENSDLEYLCCLLQEALYGKSILILLDDVWEQ---DIVERFAKLY-DNDCKYLVTTRNEAVYEITEAE 319 (862)
Q Consensus 248 lg~~~~~~~----~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~---~~~~~l~~~~-~~gsrILvTTR~~~va~~~~~~ 319 (862)
.+....... .-+.-+...-.+...+-.+.=+||||.--+. +..+.+...+ .-.+.||+.|.++.........
T Consensus 426 f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~ 505 (530)
T COG0488 426 FGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVATR 505 (530)
T ss_pred cCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcce
Confidence 333211110 1112233334556666778889999987655 3334444333 2245688888888776654433
No 470
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.39 E-value=0.78 Score=46.48 Aligned_cols=117 Identities=17% Similarity=0.173 Sum_probs=61.7
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEe-eeeeeecccccCCCchHHHHHHHHHHHH
Q 002972 166 KSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELG-FGQWCSRAACNGSKSDYQKRLARKISKF 244 (862)
Q Consensus 166 ~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~-~~~w~~~~~~~~s~~~~~~~l~~~i~~~ 244 (862)
..+.+...+.. ...++|+|..|+|||||++.+....... .+.+.+. .... .... ....
T Consensus 14 ~~~~l~~~v~~---g~~i~I~G~tGSGKTTll~aL~~~i~~~--~~~i~ied~~E~--------~~~~------~~~~-- 72 (186)
T cd01130 14 QAAYLWLAVEA---RKNILISGGTGSGKTTLLNALLAFIPPD--ERIITIEDTAEL--------QLPH------PNWV-- 72 (186)
T ss_pred HHHHHHHHHhC---CCEEEEECCCCCCHHHHHHHHHhhcCCC--CCEEEECCcccc--------CCCC------CCEE--
Confidence 34444444443 3589999999999999999998765432 1222110 0000 0000 0000
Q ss_pred HHHhccccccCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHhhccCCCce-EEEEc
Q 002972 245 LVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLYDNDCK-YLVTT 307 (862)
Q Consensus 245 l~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~~~~~l~~~~~~gsr-ILvTT 307 (862)
++... .............+.++..++..+=.++++.+.+.+.+..+.. ...|.. ++.|.
T Consensus 73 --~~~~~-~~~~~~~~~~~~~~~l~~~lR~~pd~i~igEir~~ea~~~~~a-~~tGh~g~~~T~ 132 (186)
T cd01130 73 --RLVTR-PGNVEGSGEVTMADLLRSALRMRPDRIIVGEVRGGEALDLLQA-MNTGHPGGMTTI 132 (186)
T ss_pred --EEEEe-cCCCCCCCccCHHHHHHHHhccCCCEEEEEccCcHHHHHHHHH-HhcCCCCceeee
Confidence 00000 0000011122345566667777788899999999988775543 355666 44443
No 471
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=91.38 E-value=0.18 Score=62.48 Aligned_cols=107 Identities=19% Similarity=0.192 Sum_probs=60.3
Q ss_pred CCCeEEEEEcCCCc---hHH----HHHhhcc-CCCceEEEEccchhhhhhcccccc------cCChhhHHHHHHHHhhhc
Q 002972 274 GKSILILLDDVWEQ---DIV----ERFAKLY-DNDCKYLVTTRNEAVYEITEAEKV------ELSKDDIMEISKSILLYH 339 (862)
Q Consensus 274 ~kr~LLVLDDV~~~---~~~----~~l~~~~-~~gsrILvTTR~~~va~~~~~~~~------~L~~~ea~~Lf~~~~~~~ 339 (862)
..+-|+++|..-.. ..- ..+...+ ..|+.+|+||.+.++......... .++.+. .. +..
T Consensus 406 ~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~d~~~-l~------~~Y 478 (782)
T PRK00409 406 DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVEFDEET-LR------PTY 478 (782)
T ss_pred CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEEEecCc-Cc------EEE
Confidence 46789999998643 221 2222222 468899999999887764432221 222211 00 001
Q ss_pred cc-ccCcchHHHHHHHHhhhCCchHHHHHHhhhhhccCCHHHHHHHHHHhhh
Q 002972 340 SL-LAEEELPAAAESLLERCGHHPLTVAVMGKALRKELRSEKWEKAITDLST 390 (862)
Q Consensus 340 ~~-~~~~~l~~~~~~Iv~~cgGLPLAI~~ig~~L~~~~~~~~W~~~l~~L~~ 390 (862)
.. ...+ -...+-.|++++ |+|-.|.--|..+-.. .....+.++++|..
T Consensus 479 kl~~G~~-g~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~~l~~ 527 (782)
T PRK00409 479 RLLIGIP-GKSNAFEIAKRL-GLPENIIEEAKKLIGE-DKEKLNELIASLEE 527 (782)
T ss_pred EEeeCCC-CCcHHHHHHHHh-CcCHHHHHHHHHHHhh-hhhHHHHHHHHHHH
Confidence 11 0111 124566777776 8888888777777543 34577777777654
No 472
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=91.37 E-value=0.14 Score=50.89 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.|.|+|++|+||||+|+.+++...
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578899999999999999998764
No 473
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=91.36 E-value=0.92 Score=46.80 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.-|+|+|++|+|||||+.++.++.-
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~ 30 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF 30 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC
Confidence 4688999999999999999998765
No 474
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=91.32 E-value=0.3 Score=57.56 Aligned_cols=30 Identities=37% Similarity=0.592 Sum_probs=25.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCc
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPPERF 208 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F 208 (862)
..+.+.++|++|.|||.||+++++..+..|
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~f 304 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRF 304 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeE
Confidence 366899999999999999999999766554
No 475
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=91.31 E-value=0.77 Score=50.58 Aligned_cols=110 Identities=13% Similarity=0.181 Sum_probs=59.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHhccccccCCCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDENS 259 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~lg~~~~~~~~~~ 259 (862)
...+.|+|..|+|||||++.+........ +++.+. . ..+..... .. .............
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~--~iv~ie--d---------~~El~~~~--~~------~~~l~~~~~~~~~ 202 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDE--RIITIE--D---------TREIFLPH--PN------YVHLFYSKGGQGL 202 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccc--cEEEEc--C---------ccccCCCC--CC------EEEEEecCCCCCc
Confidence 46899999999999999999987665322 222111 0 00000000 00 0000000000011
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHhhccCCCce-EEEEccchh
Q 002972 260 DLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLYDNDCK-YLVTTRNEA 311 (862)
Q Consensus 260 ~~~~l~~~l~~~L~~kr~LLVLDDV~~~~~~~~l~~~~~~gsr-ILvTTR~~~ 311 (862)
..-...+.+...|....=.+|+|.+.+.+.++.+.. ...|.. ++.|+...+
T Consensus 203 ~~~~~~~~l~~~Lr~~pd~ii~gE~r~~e~~~~l~a-~~~g~~~~i~T~Ha~~ 254 (308)
T TIGR02788 203 AKVTPKDLLQSCLRMRPDRIILGELRGDEAFDFIRA-VNTGHPGSITTLHAGS 254 (308)
T ss_pred CccCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHH-HhcCCCeEEEEEeCCC
Confidence 112234556667778888899999999887765544 345554 466766554
No 476
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=91.29 E-value=0.45 Score=56.96 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
++..|.|.+|.||||++..+....
T Consensus 161 ~~~vitGgpGTGKTt~v~~ll~~l 184 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVARLLLAL 184 (586)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 689999999999999888876543
No 477
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=91.29 E-value=2.7 Score=47.31 Aligned_cols=25 Identities=40% Similarity=0.458 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+++|+|..|+|||||.+.++--.+
T Consensus 24 ei~~l~G~nGsGKSTLl~~iaGl~~ 48 (354)
T TIGR02142 24 GVTAIFGRSGSGKTTLIRLIAGLTR 48 (354)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5999999999999999999987653
No 478
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=91.28 E-value=0.52 Score=54.47 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=26.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEE
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVE 214 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 214 (862)
-.-++|.|.+|+|||||+..+++....+..+.+++
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~ 177 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVF 177 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEE
Confidence 35789999999999999998888776444444443
No 479
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=91.28 E-value=0.32 Score=58.06 Aligned_cols=48 Identities=23% Similarity=0.336 Sum_probs=33.8
Q ss_pred CCCcCccHHHHHHHHHhcC-CCceEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 159 QGYPISSKSKFLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 159 ~~~g~~~~~~~l~~LL~~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
..+-+.+-.++|.++.... ....+|.|+|++|+||||+|+.++.....
T Consensus 370 ~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 370 EWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred hhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 3344445555555555442 23568999999999999999999987753
No 480
>PLN02200 adenylate kinase family protein
Probab=91.26 E-value=0.17 Score=53.45 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
+.+|.|.|++|+||||+|+.++...
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998764
No 481
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=91.24 E-value=0.19 Score=46.06 Aligned_cols=22 Identities=45% Similarity=0.569 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 002972 180 HQVILIVGLSGIGKSCLARQVA 201 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~ 201 (862)
-..++|+|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3689999999999999999986
No 482
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=91.23 E-value=0.16 Score=50.72 Aligned_cols=23 Identities=35% Similarity=0.650 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC
Q 002972 183 ILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 183 I~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
|.|+|.+|+|||||.+.+++..+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 67999999999999999988764
No 483
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=91.22 E-value=2.7 Score=44.05 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
--+|+|+.|.|||||.+-+.-+.
T Consensus 59 ~W~I~G~NGsGKTTLL~ll~~~~ 81 (257)
T COG1119 59 HWAIVGPNGAGKTTLLSLLTGEH 81 (257)
T ss_pred cEEEECCCCCCHHHHHHHHhccc
Confidence 46799999999999999987554
No 484
>PRK05748 replicative DNA helicase; Provisional
Probab=91.17 E-value=3.2 Score=48.29 Aligned_cols=48 Identities=15% Similarity=0.252 Sum_probs=31.5
Q ss_pred HHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEe
Q 002972 169 FLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELG 216 (862)
Q Consensus 169 ~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~ 216 (862)
.+..++.+-..-.++.|-|.+|+|||++|..++.+...+....+++++
T Consensus 192 ~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fS 239 (448)
T PRK05748 192 DLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFS 239 (448)
T ss_pred HHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEe
Confidence 444555432335689999999999999999998765422223344443
No 485
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=91.16 E-value=0.8 Score=51.65 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-.+++|+|..|.|||||.+.++--.
T Consensus 31 Ge~~~llGpsGsGKSTLLr~iaGl~ 55 (362)
T TIGR03258 31 GELLALIGKSGCGKTTLLRAIAGFV 55 (362)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998644
No 486
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=91.16 E-value=1.9 Score=52.02 Aligned_cols=26 Identities=35% Similarity=0.381 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-..++|+|..|.|||||++.+..-..
T Consensus 361 G~~v~IvG~sGsGKSTLl~lL~gl~~ 386 (588)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLQRVFD 386 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 46899999999999999999986543
No 487
>PRK14532 adenylate kinase; Provisional
Probab=91.15 E-value=0.16 Score=51.40 Aligned_cols=22 Identities=18% Similarity=0.478 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 002972 183 ILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 183 I~I~G~gGiGKTtLA~~v~~~~ 204 (862)
|.|.|++|+||||+|+.++...
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7789999999999999999765
No 488
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=91.11 E-value=0.32 Score=52.15 Aligned_cols=47 Identities=23% Similarity=0.273 Sum_probs=34.2
Q ss_pred HHHHHhcC-CCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEee
Q 002972 170 LRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (862)
Q Consensus 170 l~~LL~~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 217 (862)
+.+++..+ +.-+++.|+|.+|+|||++|.++......+. ..++|+.+
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~g-e~vlyvs~ 59 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREG-EPVLYVST 59 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcC-CcEEEEEe
Confidence 44455432 3468999999999999999999998776653 34565554
No 489
>PRK06761 hypothetical protein; Provisional
Probab=91.10 E-value=0.23 Score=53.63 Aligned_cols=27 Identities=33% Similarity=0.537 Sum_probs=24.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPPER 207 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~~~ 207 (862)
++|.|.|++|+||||+++.+++....+
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 589999999999999999999987643
No 490
>PRK12678 transcription termination factor Rho; Provisional
Probab=91.09 E-value=0.27 Score=57.48 Aligned_cols=30 Identities=23% Similarity=0.183 Sum_probs=24.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCcc
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERFV 209 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~ 209 (862)
-.-.+|+|.+|+|||||++.+++......+
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~n~~ 445 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITTNNP 445 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhhcCC
Confidence 346789999999999999999997754333
No 491
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=91.09 E-value=0.19 Score=51.89 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=24.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 178 ETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 178 ~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.++++|+++|..|+|||||..++.+...
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999987643
No 492
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.04 E-value=0.56 Score=53.14 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..++|.++|..|+||||.+..++....
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999998887653
No 493
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=91.04 E-value=0.15 Score=55.02 Aligned_cols=39 Identities=26% Similarity=0.218 Sum_probs=28.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeee
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQ 219 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~ 219 (862)
++|+|.|-||+||||+|..++.-...+...++..+|++.
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dp 41 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDP 41 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCc
Confidence 688899999999999999887766532223466666643
No 494
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=91.03 E-value=1.3 Score=45.35 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 002972 181 QVILIVGLSGIGKSCLARQVA 201 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~ 201 (862)
++++|+|+.|.|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 689999999999999999987
No 495
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=90.95 E-value=0.19 Score=50.61 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+++|+|.+|+|||||++.++....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4889999999999999999998764
No 496
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=90.86 E-value=0.22 Score=50.36 Aligned_cols=29 Identities=31% Similarity=0.641 Sum_probs=24.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCc
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERF 208 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F 208 (862)
.+.|.|+|++|+|||||+..+.......|
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~ 30 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAF 30 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcce
Confidence 36899999999999999999998864444
No 497
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=90.79 E-value=0.16 Score=54.09 Aligned_cols=24 Identities=33% Similarity=0.750 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
+|.++|++|+||||+|+.++....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999987654
No 498
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=90.78 E-value=0.48 Score=50.73 Aligned_cols=49 Identities=20% Similarity=0.231 Sum_probs=32.0
Q ss_pred HHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEee
Q 002972 169 FLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (862)
Q Consensus 169 ~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 217 (862)
.+..++..-..-.++.|-|.+|+|||++|.+++.+...+-...++|+++
T Consensus 8 ~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~Sl 56 (259)
T PF03796_consen 8 ALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSL 56 (259)
T ss_dssp HHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEES
T ss_pred HHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcC
Confidence 4555554322345899999999999999999998765322234555443
No 499
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=90.74 E-value=0.16 Score=50.21 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 002972 183 ILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 183 I~I~G~gGiGKTtLA~~v~~~ 203 (862)
|+|+|..|+|||||+..+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999976
No 500
>PTZ00494 tuzin-like protein; Provisional
Probab=90.73 E-value=2.3 Score=48.25 Aligned_cols=71 Identities=17% Similarity=0.263 Sum_probs=52.0
Q ss_pred ccCCCcCccHHHHHHHHHhcC--CCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHH
Q 002972 157 AEQGYPISSKSKFLRKLLEQE--ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQ 234 (862)
Q Consensus 157 ~~~~~g~~~~~~~l~~LL~~~--~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~ 234 (862)
....+.++.++..+.+.|.+- ..++++++.|.-|.||++|.+....+.+. ..+++|++ ..++..
T Consensus 370 ~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~----paV~VDVR----------g~EDtL 435 (664)
T PTZ00494 370 EAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGV----ALVHVDVG----------GTEDTL 435 (664)
T ss_pred cccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCC----CeEEEEec----------CCcchH
Confidence 345668888999999988763 34899999999999999999998877652 35566664 344455
Q ss_pred HHHHHHH
Q 002972 235 KRLARKI 241 (862)
Q Consensus 235 ~~l~~~i 241 (862)
..+.+.+
T Consensus 436 rsVVKAL 442 (664)
T PTZ00494 436 RSVVRAL 442 (664)
T ss_pred HHHHHHh
Confidence 5555544
Done!