Query 002972
Match_columns 862
No_of_seqs 392 out of 3056
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 08:32:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002972.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002972hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.1E-40 3.8E-45 393.2 29.3 305 161-502 131-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 3.4E-37 1.1E-41 396.5 25.2 320 156-504 122-455 (1249)
3 1vt4_I APAF-1 related killer D 100.0 1.1E-35 3.8E-40 357.0 21.1 284 160-493 130-435 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 5.3E-34 1.8E-38 339.5 25.2 315 156-500 122-451 (591)
5 2qen_A Walker-type ATPase; unk 99.6 1.5E-13 5.3E-18 151.2 23.4 292 157-495 11-349 (350)
6 2fna_A Conserved hypothetical 99.5 5.7E-13 1.9E-17 146.9 23.6 293 157-494 12-356 (357)
7 1w5s_A Origin recognition comp 99.5 6.9E-13 2.4E-17 149.7 20.7 293 158-490 22-387 (412)
8 2qby_B CDC6 homolog 3, cell di 99.2 1.1E-09 3.8E-14 122.2 23.1 279 158-478 20-339 (384)
9 2v1u_A Cell division control p 99.2 1.7E-09 5.7E-14 120.5 23.2 278 158-478 19-351 (387)
10 2qby_A CDC6 homolog 1, cell di 99.1 2E-09 6.8E-14 119.7 19.2 280 158-478 20-348 (386)
11 1fnn_A CDC6P, cell division co 99.1 9.6E-09 3.3E-13 114.6 23.4 280 158-478 17-351 (389)
12 1njg_A DNA polymerase III subu 98.9 6.7E-08 2.3E-12 99.4 18.4 191 158-372 23-231 (250)
13 2chg_A Replication factor C sm 98.8 2.1E-07 7.1E-12 94.5 18.3 177 158-370 17-205 (226)
14 3qfl_A MLA10; coiled-coil, (CC 98.7 2.4E-08 8.3E-13 91.7 9.0 80 8-88 4-84 (115)
15 1sxj_B Activator 1 37 kDa subu 98.6 6.5E-07 2.2E-11 96.9 16.1 176 158-369 21-210 (323)
16 1iqp_A RFCS; clamp loader, ext 98.4 4.1E-06 1.4E-10 90.7 15.4 176 158-369 25-212 (327)
17 1hqc_A RUVB; extended AAA-ATPa 98.3 3.3E-05 1.1E-09 83.6 19.8 257 158-494 12-312 (324)
18 1jr3_A DNA polymerase III subu 98.2 1.3E-05 4.5E-10 88.5 16.3 192 158-369 16-221 (373)
19 2chq_A Replication factor C sm 98.1 2E-05 7E-10 84.8 14.0 171 158-367 17-202 (319)
20 3pfi_A Holliday junction ATP-d 98.0 0.00014 4.7E-09 79.4 18.5 243 158-480 29-315 (338)
21 3te6_A Regulatory protein SIR3 98.0 2.6E-05 8.9E-10 84.4 11.5 162 161-338 23-213 (318)
22 2z4s_A Chromosomal replication 97.9 9.4E-05 3.2E-09 84.1 16.0 162 170-366 120-303 (440)
23 3h4m_A Proteasome-activating n 97.9 0.00021 7.1E-09 75.9 16.7 50 158-207 17-78 (285)
24 3u61_B DNA polymerase accessor 97.8 0.00024 8.3E-09 76.9 15.8 48 158-205 26-73 (324)
25 3bos_A Putative DNA replicatio 97.8 3.5E-05 1.2E-09 79.1 8.6 157 165-368 38-216 (242)
26 1sxj_E Activator 1 40 kDa subu 97.8 0.00043 1.5E-08 75.8 17.6 94 273-368 132-236 (354)
27 3pvs_A Replication-associated 97.8 0.00019 6.5E-09 81.6 14.4 169 158-366 26-212 (447)
28 1sxj_D Activator 1 41 kDa subu 97.7 0.00028 9.7E-09 77.1 15.0 184 158-367 37-233 (353)
29 2qz4_A Paraplegin; AAA+, SPG7, 97.7 0.00051 1.7E-08 71.7 16.1 49 158-206 6-65 (262)
30 1sxj_A Activator 1 95 kDa subu 97.7 8.4E-05 2.9E-09 86.3 10.8 185 158-369 39-253 (516)
31 1jbk_A CLPB protein; beta barr 97.7 8.8E-05 3E-09 72.8 9.1 46 158-204 22-67 (195)
32 3syl_A Protein CBBX; photosynt 97.6 0.00046 1.6E-08 74.0 13.9 45 160-204 33-91 (309)
33 1xwi_A SKD1 protein; VPS4B, AA 97.6 0.002 6.9E-08 69.9 18.7 47 158-204 12-69 (322)
34 3d8b_A Fidgetin-like protein 1 97.6 0.0012 4.3E-08 72.6 16.8 48 158-205 84-142 (357)
35 3b9p_A CG5977-PA, isoform A; A 97.6 0.0021 7.2E-08 68.5 18.0 48 158-205 21-79 (297)
36 1l8q_A Chromosomal replication 97.5 0.0012 4.2E-08 71.4 15.0 157 168-363 24-202 (324)
37 3eie_A Vacuolar protein sortin 97.5 0.0012 4E-08 71.7 14.4 49 158-206 18-77 (322)
38 3uk6_A RUVB-like 2; hexameric 97.4 0.0016 5.6E-08 71.5 15.9 48 159-206 45-96 (368)
39 3cf0_A Transitional endoplasmi 97.4 0.0013 4.4E-08 70.6 14.2 48 158-205 15-74 (301)
40 2p65_A Hypothetical protein PF 97.4 0.00021 7.1E-09 70.0 6.9 46 158-204 22-67 (187)
41 2qp9_X Vacuolar protein sortin 97.4 0.0024 8.3E-08 70.2 16.0 48 158-205 51-109 (355)
42 1a5t_A Delta prime, HOLB; zinc 97.4 0.003 1E-07 68.8 16.4 178 165-369 9-205 (334)
43 2zan_A Vacuolar protein sortin 97.3 0.003 1E-07 71.7 16.5 47 158-204 134-191 (444)
44 1sxj_C Activator 1 40 kDa subu 97.3 0.0019 6.5E-08 70.5 14.3 170 159-364 26-207 (340)
45 1d2n_A N-ethylmaleimide-sensit 97.3 0.0022 7.4E-08 67.6 13.8 28 178-205 62-89 (272)
46 3vfd_A Spastin; ATPase, microt 97.3 0.0059 2E-07 67.9 17.5 49 158-206 115-174 (389)
47 1in4_A RUVB, holliday junction 97.2 0.015 5E-07 63.3 19.7 47 159-205 26-76 (334)
48 3ec2_A DNA replication protein 97.2 0.0006 2.1E-08 67.1 7.8 25 180-204 38-62 (180)
49 4b4t_J 26S protease regulatory 97.2 0.0069 2.4E-07 67.2 16.5 50 159-208 149-210 (405)
50 4b4t_L 26S protease subunit RP 97.1 0.0091 3.1E-07 67.1 17.4 49 160-208 183-243 (437)
51 1lv7_A FTSH; alpha/beta domain 97.1 0.0076 2.6E-07 62.7 15.3 48 158-205 12-70 (257)
52 3n71_A Histone lysine methyltr 97.1 0.00063 2.2E-08 78.2 7.2 105 601-709 314-418 (490)
53 2w58_A DNAI, primosome compone 97.0 0.0013 4.6E-08 65.7 8.6 25 181-205 55-79 (202)
54 4b4t_H 26S protease regulatory 97.0 0.013 4.3E-07 66.0 16.8 49 160-208 211-271 (467)
55 3qww_A SET and MYND domain-con 97.0 0.00078 2.7E-08 76.2 7.1 111 608-723 310-420 (433)
56 4b4t_K 26S protease regulatory 97.0 0.0057 2E-07 68.6 14.0 51 158-208 172-234 (428)
57 4b4t_M 26S protease regulatory 96.9 0.0088 3E-07 67.2 15.0 49 159-207 182-242 (434)
58 4b4t_I 26S protease regulatory 96.9 0.016 5.3E-07 64.7 16.7 48 161-208 185-244 (437)
59 1qvr_A CLPB protein; coiled co 96.9 0.0019 6.4E-08 79.6 9.8 46 158-204 170-215 (854)
60 3pxg_A Negative regulator of g 96.8 0.0036 1.2E-07 71.5 11.1 46 158-204 180-225 (468)
61 3hu3_A Transitional endoplasmi 96.8 0.0067 2.3E-07 69.6 12.9 47 159-205 205-263 (489)
62 2ce7_A Cell division protein F 96.7 0.017 5.7E-07 65.9 15.2 48 158-205 16-74 (476)
63 1r6b_X CLPA protein; AAA+, N-t 96.6 0.013 4.5E-07 71.0 14.5 46 158-204 186-231 (758)
64 3n70_A Transport activator; si 96.6 0.015 5.3E-07 54.8 11.7 46 160-205 3-49 (145)
65 2cvh_A DNA repair and recombin 96.6 0.013 4.5E-07 59.0 11.8 45 169-217 8-53 (220)
66 4fcw_A Chaperone protein CLPB; 96.6 0.0062 2.1E-07 65.1 9.8 45 160-204 19-71 (311)
67 2kjq_A DNAA-related protein; s 96.5 0.0015 5.2E-08 62.5 4.3 27 179-205 35-61 (149)
68 3qwp_A SET and MYND domain-con 96.5 0.0014 4.9E-08 74.0 4.5 119 600-723 291-409 (429)
69 3pxi_A Negative regulator of g 96.4 0.012 4E-07 71.5 12.2 46 158-204 180-225 (758)
70 3lw7_A Adenylate kinase relate 96.4 0.012 4.3E-07 56.5 10.1 22 181-203 2-23 (179)
71 3cf2_A TER ATPase, transitiona 96.4 0.024 8.3E-07 68.4 14.5 48 160-207 206-265 (806)
72 3n71_A Histone lysine methyltr 96.4 0.004 1.4E-07 71.5 7.3 116 591-710 346-461 (490)
73 3co5_A Putative two-component 96.4 0.008 2.7E-07 56.7 8.1 46 160-205 6-52 (143)
74 3t15_A Ribulose bisphosphate c 96.2 0.0068 2.3E-07 64.7 7.6 29 180-208 36-64 (293)
75 2gno_A DNA polymerase III, gam 96.2 0.04 1.4E-06 59.0 13.4 40 163-203 2-41 (305)
76 2vhj_A Ntpase P4, P4; non- hyd 96.0 0.0056 1.9E-07 65.8 5.5 72 180-287 123-194 (331)
77 2w0m_A SSO2452; RECA, SSPF, un 95.8 0.025 8.5E-07 57.2 9.4 36 169-204 11-47 (235)
78 4a74_A DNA repair and recombin 95.7 0.038 1.3E-06 55.9 10.1 49 169-217 13-67 (231)
79 4db6_A Armadillo repeat protei 95.5 0.25 8.6E-06 48.7 15.1 193 625-853 14-207 (210)
80 4gp7_A Metallophosphoesterase; 95.5 0.028 9.6E-07 54.6 7.7 22 180-201 9-30 (171)
81 3jvv_A Twitching mobility prot 95.3 0.0035 1.2E-07 68.9 0.6 121 169-313 114-234 (356)
82 3tif_A Uncharacterized ABC tra 95.3 0.2 6.7E-06 51.5 13.8 26 180-205 31-56 (235)
83 4db8_A Armadillo-repeat protei 95.1 0.37 1.3E-05 48.9 15.5 200 618-853 49-249 (252)
84 1nlf_A Regulatory protein REPA 95.1 0.033 1.1E-06 58.7 7.4 24 180-203 30-53 (279)
85 2pcj_A ABC transporter, lipopr 95.1 0.31 1.1E-05 49.5 14.3 26 180-205 30-55 (224)
86 4hxt_A De novo protein OR329; 95.0 0.11 3.9E-06 52.6 11.2 203 615-855 36-241 (252)
87 2dhr_A FTSH; AAA+ protein, hex 95.0 0.21 7.2E-06 57.2 14.3 48 158-205 31-89 (499)
88 1sgw_A Putative ABC transporte 94.9 0.18 6E-06 51.0 12.0 26 180-205 35-60 (214)
89 1qhx_A CPT, protein (chloramph 94.9 0.012 4E-07 57.3 3.1 25 181-205 4-28 (178)
90 1vpl_A ABC transporter, ATP-bi 94.8 0.33 1.1E-05 50.4 14.1 26 180-205 41-66 (256)
91 3pxi_A Negative regulator of g 94.7 0.081 2.8E-06 64.1 10.3 46 159-204 492-545 (758)
92 2qi9_C Vitamin B12 import ATP- 94.6 0.17 5.8E-06 52.5 11.2 27 180-206 26-52 (249)
93 1zp6_A Hypothetical protein AT 94.6 0.03 1E-06 55.1 5.0 24 180-203 9-32 (191)
94 4hxt_A De novo protein OR329; 94.5 0.27 9.2E-06 49.7 12.5 192 625-853 4-197 (252)
95 2nq2_C Hypothetical ABC transp 94.5 0.24 8.1E-06 51.5 12.1 26 180-205 31-56 (253)
96 1v5w_A DMC1, meiotic recombina 94.5 0.15 5.1E-06 55.5 11.0 49 169-217 110-164 (343)
97 2eyu_A Twitching motility prot 94.5 0.036 1.2E-06 58.1 5.7 111 179-312 24-135 (261)
98 2olj_A Amino acid ABC transpor 94.5 0.49 1.7E-05 49.4 14.4 26 180-205 50-75 (263)
99 3t61_A Gluconokinase; PSI-biol 94.4 0.067 2.3E-06 53.2 7.4 25 180-204 18-42 (202)
100 2r62_A Cell division protease 94.3 0.019 6.4E-07 60.0 3.0 49 158-206 11-70 (268)
101 1iy2_A ATP-dependent metallopr 94.3 0.061 2.1E-06 56.6 7.0 48 158-205 40-98 (278)
102 3kb2_A SPBC2 prophage-derived 94.3 0.022 7.4E-07 54.8 3.2 25 181-205 2-26 (173)
103 4db8_A Armadillo-repeat protei 94.3 0.31 1.1E-05 49.6 12.2 181 636-853 24-207 (252)
104 1ji0_A ABC transporter; ATP bi 94.3 0.54 1.9E-05 48.3 14.0 26 180-205 32-57 (240)
105 1ly1_A Polynucleotide kinase; 94.2 0.025 8.5E-07 54.9 3.6 22 181-202 3-24 (181)
106 2c95_A Adenylate kinase 1; tra 94.2 0.16 5.6E-06 49.7 9.5 25 180-204 9-33 (196)
107 2pze_A Cystic fibrosis transme 94.2 0.41 1.4E-05 48.8 12.8 26 180-205 34-59 (229)
108 2zu0_C Probable ATP-dependent 94.2 0.76 2.6E-05 48.0 15.1 24 180-203 46-69 (267)
109 3bh0_A DNAB-like replicative h 94.0 0.14 4.6E-06 55.1 9.0 48 169-217 57-104 (315)
110 2z43_A DNA repair and recombin 94.0 0.1 3.4E-06 56.4 8.0 49 169-217 95-149 (324)
111 3trf_A Shikimate kinase, SK; a 94.0 0.022 7.5E-07 55.8 2.5 26 180-205 5-30 (185)
112 3vaa_A Shikimate kinase, SK; s 93.9 0.028 9.7E-07 56.0 3.3 25 180-204 25-49 (199)
113 3io5_A Recombination and repai 93.9 0.098 3.4E-06 56.0 7.5 49 169-217 13-66 (333)
114 3c8u_A Fructokinase; YP_612366 93.9 0.038 1.3E-06 55.5 4.2 27 178-204 20-46 (208)
115 1kag_A SKI, shikimate kinase I 93.8 0.025 8.7E-07 54.6 2.7 25 181-205 5-29 (173)
116 1r6b_X CLPA protein; AAA+, N-t 93.8 0.078 2.7E-06 64.2 7.6 25 180-204 488-512 (758)
117 4db6_A Armadillo repeat protei 93.8 0.3 1E-05 48.2 10.7 151 668-854 13-166 (210)
118 1ypw_A Transitional endoplasmi 93.7 0.11 3.7E-06 63.4 8.4 48 159-206 205-264 (806)
119 2pjz_A Hypothetical protein ST 93.7 0.67 2.3E-05 48.3 13.5 24 181-204 31-54 (263)
120 2b8t_A Thymidine kinase; deoxy 93.7 0.025 8.4E-07 57.8 2.3 113 180-311 12-127 (223)
121 1kgd_A CASK, peripheral plasma 93.6 0.034 1.2E-06 54.5 3.3 26 180-205 5-30 (180)
122 1vma_A Cell division protein F 93.6 0.16 5.5E-06 54.3 8.7 27 179-205 103-129 (306)
123 1v43_A Sugar-binding transport 93.6 0.24 8.3E-06 54.4 10.3 25 180-204 37-61 (372)
124 4b8j_A Importin subunit alpha- 93.6 0.26 8.8E-06 56.5 11.1 197 622-855 201-400 (528)
125 1nks_A Adenylate kinase; therm 93.6 0.038 1.3E-06 54.1 3.5 25 181-205 2-26 (194)
126 1qvr_A CLPB protein; coiled co 93.6 0.099 3.4E-06 64.2 8.0 45 160-204 560-612 (854)
127 1sky_E F1-ATPase, F1-ATP synth 93.6 0.12 4.2E-06 58.3 8.0 45 169-214 141-185 (473)
128 3uie_A Adenylyl-sulfate kinase 93.5 0.039 1.3E-06 54.9 3.6 27 179-205 24-50 (200)
129 2rhm_A Putative kinase; P-loop 93.5 0.044 1.5E-06 53.8 3.8 25 180-204 5-29 (193)
130 3hr8_A Protein RECA; alpha and 93.5 0.13 4.3E-06 56.3 7.8 99 168-286 47-150 (356)
131 2q6t_A DNAB replication FORK h 93.5 0.19 6.5E-06 56.7 9.5 49 169-217 189-237 (444)
132 2ewv_A Twitching motility prot 93.4 0.044 1.5E-06 60.5 4.1 109 179-311 135-245 (372)
133 1ofh_A ATP-dependent HSL prote 93.4 0.048 1.6E-06 57.9 4.2 47 159-205 16-75 (310)
134 3tau_A Guanylate kinase, GMP k 93.4 0.054 1.8E-06 54.4 4.3 27 180-206 8-34 (208)
135 3tui_C Methionine import ATP-b 93.4 0.82 2.8E-05 50.0 14.0 52 264-315 170-229 (366)
136 3umf_A Adenylate kinase; rossm 93.3 0.39 1.3E-05 48.6 10.7 26 179-204 28-53 (217)
137 2pt7_A CAG-ALFA; ATPase, prote 93.3 0.16 5.4E-06 55.0 8.2 104 181-311 172-276 (330)
138 1kht_A Adenylate kinase; phosp 93.3 0.041 1.4E-06 53.9 3.3 25 181-205 4-28 (192)
139 1knq_A Gluconate kinase; ALFA/ 93.3 0.046 1.6E-06 52.9 3.6 25 180-204 8-32 (175)
140 1uf9_A TT1252 protein; P-loop, 93.2 0.053 1.8E-06 53.7 4.0 25 179-203 7-31 (203)
141 1ex7_A Guanylate kinase; subst 93.2 0.036 1.2E-06 54.9 2.6 28 181-208 2-29 (186)
142 2yyz_A Sugar ABC transporter, 93.2 0.23 7.8E-06 54.3 9.3 26 180-205 29-54 (359)
143 1tev_A UMP-CMP kinase; ploop, 93.1 0.051 1.8E-06 53.2 3.6 25 180-204 3-27 (196)
144 4eun_A Thermoresistant glucoki 93.1 0.047 1.6E-06 54.4 3.3 26 179-204 28-53 (200)
145 3iij_A Coilin-interacting nucl 93.0 0.041 1.4E-06 53.6 2.7 25 180-204 11-35 (180)
146 2jaq_A Deoxyguanosine kinase; 93.0 0.048 1.6E-06 54.0 3.3 24 182-205 2-25 (205)
147 4a1f_A DNAB helicase, replicat 93.0 0.19 6.4E-06 54.5 8.2 37 169-205 35-71 (338)
148 2ze6_A Isopentenyl transferase 93.0 0.051 1.7E-06 56.5 3.6 25 181-205 2-26 (253)
149 3fvq_A Fe(3+) IONS import ATP- 93.0 0.3 1E-05 53.4 9.8 26 180-205 30-55 (359)
150 2bdt_A BH3686; alpha-beta prot 93.0 0.054 1.8E-06 53.2 3.6 22 181-202 3-24 (189)
151 1n0w_A DNA repair protein RAD5 93.0 0.094 3.2E-06 53.4 5.5 49 169-217 12-66 (243)
152 1gvn_B Zeta; postsegregational 92.9 0.074 2.5E-06 56.4 4.8 25 180-204 33-57 (287)
153 3tr0_A Guanylate kinase, GMP k 92.9 0.05 1.7E-06 54.0 3.2 24 181-204 8-31 (205)
154 1odf_A YGR205W, hypothetical 3 92.9 0.089 3.1E-06 55.9 5.4 28 178-205 29-56 (290)
155 1via_A Shikimate kinase; struc 92.9 0.043 1.5E-06 53.2 2.7 23 182-204 6-28 (175)
156 1ukz_A Uridylate kinase; trans 92.9 0.057 1.9E-06 53.7 3.6 26 179-204 14-39 (203)
157 2vli_A Antibiotic resistance p 92.9 0.037 1.3E-06 53.9 2.2 26 180-205 5-30 (183)
158 2j41_A Guanylate kinase; GMP, 92.9 0.056 1.9E-06 53.6 3.5 25 180-204 6-30 (207)
159 2qt1_A Nicotinamide riboside k 92.9 0.069 2.3E-06 53.3 4.1 26 179-204 20-45 (207)
160 2r6a_A DNAB helicase, replicat 92.8 0.26 8.7E-06 55.8 9.4 49 169-217 192-240 (454)
161 1zuh_A Shikimate kinase; alpha 92.8 0.055 1.9E-06 52.0 3.3 26 180-205 7-32 (168)
162 1rz3_A Hypothetical protein rb 92.8 0.1 3.6E-06 51.9 5.4 26 179-204 21-46 (201)
163 2if2_A Dephospho-COA kinase; a 92.8 0.054 1.8E-06 53.9 3.3 22 181-202 2-23 (204)
164 2iyv_A Shikimate kinase, SK; t 92.8 0.044 1.5E-06 53.6 2.5 24 181-204 3-26 (184)
165 2qor_A Guanylate kinase; phosp 92.8 0.046 1.6E-06 54.6 2.7 26 180-205 12-37 (204)
166 1q57_A DNA primase/helicase; d 92.7 0.26 8.9E-06 56.5 9.3 48 170-217 232-279 (503)
167 2bwj_A Adenylate kinase 5; pho 92.7 0.057 2E-06 53.2 3.3 25 180-204 12-36 (199)
168 1y63_A LMAJ004144AAA protein; 92.7 0.058 2E-06 52.9 3.3 24 180-203 10-33 (184)
169 1cke_A CK, MSSA, protein (cyti 92.7 0.058 2E-06 54.6 3.4 24 181-204 6-29 (227)
170 3cm0_A Adenylate kinase; ATP-b 92.7 0.064 2.2E-06 52.4 3.5 25 180-204 4-28 (186)
171 3asz_A Uridine kinase; cytidin 92.7 0.066 2.3E-06 53.5 3.7 25 180-204 6-30 (211)
172 1jjv_A Dephospho-COA kinase; P 92.7 0.064 2.2E-06 53.4 3.6 22 181-202 3-24 (206)
173 1e6c_A Shikimate kinase; phosp 92.6 0.05 1.7E-06 52.4 2.7 24 181-204 3-26 (173)
174 2i1q_A DNA repair and recombin 92.6 0.22 7.5E-06 53.5 8.0 35 169-203 86-121 (322)
175 1qf9_A UMP/CMP kinase, protein 92.6 0.067 2.3E-06 52.3 3.6 25 180-204 6-30 (194)
176 1ixz_A ATP-dependent metallopr 92.6 0.08 2.7E-06 54.7 4.3 23 183-205 52-74 (254)
177 2plr_A DTMP kinase, probable t 92.6 0.066 2.3E-06 53.3 3.6 26 181-206 5-30 (213)
178 3a00_A Guanylate kinase, GMP k 92.5 0.052 1.8E-06 53.4 2.7 25 181-205 2-26 (186)
179 2cdn_A Adenylate kinase; phosp 92.5 0.072 2.5E-06 52.9 3.7 25 180-204 20-44 (201)
180 2yvu_A Probable adenylyl-sulfa 92.5 0.071 2.4E-06 52.2 3.6 26 180-205 13-38 (186)
181 1wa5_B Importin alpha subunit; 92.4 1.9 6.6E-05 49.2 16.3 197 623-853 257-455 (530)
182 3fwy_A Light-independent proto 92.4 0.07 2.4E-06 57.4 3.7 39 179-218 47-85 (314)
183 3a4m_A L-seryl-tRNA(SEC) kinas 92.3 0.074 2.5E-06 55.4 3.7 24 180-203 4-27 (260)
184 2pbr_A DTMP kinase, thymidylat 92.3 0.069 2.4E-06 52.3 3.3 23 182-204 2-24 (195)
185 2hf9_A Probable hydrogenase ni 92.3 0.11 3.9E-06 52.3 5.0 37 168-205 27-63 (226)
186 1jr3_D DNA polymerase III, del 92.3 0.63 2.1E-05 50.3 11.3 148 178-367 16-183 (343)
187 3ney_A 55 kDa erythrocyte memb 92.3 0.068 2.3E-06 53.4 3.2 26 180-205 19-44 (197)
188 1tue_A Replication protein E1; 92.3 0.09 3.1E-06 52.7 4.0 42 164-205 42-83 (212)
189 2pt5_A Shikimate kinase, SK; a 92.3 0.073 2.5E-06 51.0 3.3 23 182-204 2-24 (168)
190 1z47_A CYSA, putative ABC-tran 92.2 1.1 3.8E-05 48.8 12.9 26 180-205 41-66 (355)
191 4b8j_A Importin subunit alpha- 92.2 2.6 8.9E-05 48.0 17.0 201 618-853 112-313 (528)
192 3ice_A Transcription terminati 92.1 0.22 7.7E-06 54.6 7.2 37 168-205 163-199 (422)
193 1ye8_A Protein THEP1, hypothet 92.1 0.077 2.6E-06 52.1 3.3 24 182-205 2-25 (178)
194 3hws_A ATP-dependent CLP prote 92.1 0.1 3.6E-06 57.1 4.7 27 180-206 51-77 (363)
195 2bbw_A Adenylate kinase 4, AK4 92.0 0.075 2.6E-06 54.7 3.3 25 180-204 27-51 (246)
196 2grj_A Dephospho-COA kinase; T 92.0 0.088 3E-06 52.3 3.6 25 179-203 11-35 (192)
197 1g5t_A COB(I)alamin adenosyltr 92.0 0.44 1.5E-05 47.3 8.6 46 266-311 110-164 (196)
198 1xp8_A RECA protein, recombina 92.0 0.25 8.6E-06 54.2 7.6 98 168-285 60-162 (366)
199 3tlx_A Adenylate kinase 2; str 91.9 0.13 4.4E-06 53.0 5.0 27 178-204 27-53 (243)
200 2v54_A DTMP kinase, thymidylat 91.9 0.086 3E-06 52.2 3.5 25 180-204 4-28 (204)
201 1lvg_A Guanylate kinase, GMP k 91.9 0.069 2.3E-06 53.2 2.7 24 181-204 5-28 (198)
202 3d31_A Sulfate/molybdate ABC t 91.9 1.2 3.9E-05 48.5 12.6 26 180-205 26-51 (348)
203 1nn5_A Similar to deoxythymidy 91.9 0.09 3.1E-06 52.5 3.6 26 180-205 9-34 (215)
204 2wwf_A Thymidilate kinase, put 91.9 0.082 2.8E-06 52.7 3.3 26 180-205 10-35 (212)
205 1uj2_A Uridine-cytidine kinase 91.9 0.093 3.2E-06 54.3 3.8 27 179-205 21-47 (252)
206 1wa5_B Importin alpha subunit; 91.8 2.4 8.2E-05 48.4 16.0 199 622-851 298-506 (530)
207 4e22_A Cytidylate kinase; P-lo 91.7 0.069 2.4E-06 55.4 2.6 26 180-205 27-52 (252)
208 3ch4_B Pmkase, phosphomevalona 91.7 0.64 2.2E-05 46.4 9.4 25 179-203 10-34 (202)
209 1znw_A Guanylate kinase, GMP k 91.7 0.09 3.1E-06 52.6 3.3 25 180-204 20-44 (207)
210 1zd8_A GTP:AMP phosphotransfer 91.6 0.079 2.7E-06 53.8 2.9 25 180-204 7-31 (227)
211 2z0h_A DTMP kinase, thymidylat 91.6 0.096 3.3E-06 51.5 3.4 23 182-204 2-24 (197)
212 2p5t_B PEZT; postsegregational 91.6 0.12 4.1E-06 53.6 4.2 26 180-205 32-57 (253)
213 2bjv_A PSP operon transcriptio 91.5 0.13 4.6E-06 53.3 4.6 46 160-205 8-54 (265)
214 2pez_A Bifunctional 3'-phospho 91.4 0.11 3.8E-06 50.5 3.6 25 180-204 5-29 (179)
215 3dl0_A Adenylate kinase; phosp 91.4 0.091 3.1E-06 52.7 3.0 23 182-204 2-24 (216)
216 3aez_A Pantothenate kinase; tr 91.4 0.11 3.8E-06 55.7 3.8 26 179-204 89-114 (312)
217 2jeo_A Uridine-cytidine kinase 91.4 0.12 4E-06 53.3 3.9 26 179-204 24-49 (245)
218 3fb4_A Adenylate kinase; psych 91.4 0.1 3.5E-06 52.3 3.4 23 182-204 2-24 (216)
219 3j16_B RLI1P; ribosome recycli 91.3 0.77 2.6E-05 53.8 11.2 26 180-205 103-128 (608)
220 1vht_A Dephospho-COA kinase; s 91.3 0.12 4.2E-06 51.9 3.9 23 180-202 4-26 (218)
221 3gmt_A Adenylate kinase; ssgci 91.3 1.2 4.1E-05 45.3 11.2 25 180-204 8-32 (230)
222 1gtv_A TMK, thymidylate kinase 91.2 0.056 1.9E-06 54.1 1.2 24 181-204 1-24 (214)
223 1aky_A Adenylate kinase; ATP:A 91.2 0.11 3.6E-06 52.5 3.3 25 180-204 4-28 (220)
224 2jdq_A Importin alpha-1 subuni 91.2 1.3 4.6E-05 48.8 12.8 197 622-851 233-439 (450)
225 3p32_A Probable GTPase RV1496/ 91.2 0.18 6.3E-06 55.0 5.4 36 169-204 68-103 (355)
226 2x8a_A Nuclear valosin-contain 91.2 0.098 3.4E-06 55.1 3.1 23 183-205 47-69 (274)
227 1zak_A Adenylate kinase; ATP:A 91.2 0.099 3.4E-06 52.8 3.0 26 180-205 5-30 (222)
228 1z6g_A Guanylate kinase; struc 91.2 0.09 3.1E-06 53.2 2.7 25 180-204 23-47 (218)
229 2f6r_A COA synthase, bifunctio 91.1 0.13 4.3E-06 54.4 3.9 24 179-202 74-97 (281)
230 3qwp_A SET and MYND domain-con 91.1 0.094 3.2E-06 59.0 3.0 97 591-695 324-420 (429)
231 1xjc_A MOBB protein homolog; s 91.0 0.12 4.1E-06 50.2 3.3 26 180-205 4-29 (169)
232 1m7g_A Adenylylsulfate kinase; 91.0 0.13 4.3E-06 51.7 3.6 25 180-204 25-49 (211)
233 1um8_A ATP-dependent CLP prote 91.0 0.17 5.7E-06 55.7 4.9 27 180-206 72-98 (376)
234 2wsm_A Hydrogenase expression/ 91.0 0.15 5.2E-06 51.1 4.2 38 167-205 18-55 (221)
235 3qww_A SET and MYND domain-con 90.9 0.1 3.4E-06 58.8 3.0 96 591-694 335-430 (433)
236 2ck3_D ATP synthase subunit be 90.9 0.43 1.5E-05 53.8 8.0 39 167-206 141-179 (482)
237 3ake_A Cytidylate kinase; CMP 90.8 0.13 4.3E-06 51.1 3.4 23 182-204 4-26 (208)
238 3kl4_A SRP54, signal recogniti 90.8 0.9 3.1E-05 50.9 10.6 27 179-205 96-122 (433)
239 1fx0_B ATP synthase beta chain 90.8 0.68 2.3E-05 52.4 9.6 48 168-216 154-201 (498)
240 3a8t_A Adenylate isopentenyltr 90.8 0.14 4.8E-06 55.4 3.8 26 180-205 40-65 (339)
241 1htw_A HI0065; nucleotide-bind 90.7 0.14 4.9E-06 49.0 3.6 25 180-204 33-57 (158)
242 2ehv_A Hypothetical protein PH 90.7 0.12 4.3E-06 52.7 3.3 22 180-201 30-51 (251)
243 1rj9_A FTSY, signal recognitio 90.6 0.13 4.5E-06 54.9 3.5 27 179-205 101-127 (304)
244 3tqc_A Pantothenate kinase; bi 90.6 0.16 5.3E-06 54.8 4.1 27 179-205 91-117 (321)
245 2ffh_A Protein (FFH); SRP54, s 90.6 0.52 1.8E-05 52.7 8.5 27 179-205 97-123 (425)
246 2xxa_A Signal recognition part 90.6 0.72 2.5E-05 51.8 9.6 39 179-217 99-137 (433)
247 1s96_A Guanylate kinase, GMP k 90.5 0.13 4.5E-06 52.1 3.2 26 180-205 16-41 (219)
248 3d3q_A TRNA delta(2)-isopenten 90.5 0.13 4.5E-06 55.7 3.4 25 181-205 8-32 (340)
249 3nwj_A ATSK2; P loop, shikimat 90.4 0.11 3.9E-06 53.8 2.7 25 181-205 49-73 (250)
250 1ojl_A Transcriptional regulat 90.3 0.21 7.2E-06 53.3 4.8 45 160-204 4-49 (304)
251 3exa_A TRNA delta(2)-isopenten 90.2 0.17 5.7E-06 54.2 3.8 26 180-205 3-28 (322)
252 4b8c_D Glucose-repressible alc 90.2 0.099 3.4E-06 63.0 2.3 47 557-604 263-309 (727)
253 3bk7_A ABC transporter ATP-bin 90.2 1.7 5.7E-05 51.0 12.6 134 180-315 382-537 (607)
254 1pzn_A RAD51, DNA repair and r 90.1 0.28 9.6E-06 53.5 5.7 36 169-204 119-155 (349)
255 2jdq_A Importin alpha-1 subuni 90.1 7.8 0.00027 42.5 17.8 197 623-853 64-261 (450)
256 3lnc_A Guanylate kinase, GMP k 90.1 0.1 3.5E-06 53.1 2.0 25 180-204 27-52 (231)
257 2r44_A Uncharacterized protein 90.1 0.15 5.2E-06 54.8 3.5 46 159-207 28-73 (331)
258 2c9o_A RUVB-like 1; hexameric 90.0 0.21 7.3E-06 56.5 4.8 49 158-206 37-89 (456)
259 1e4v_A Adenylate kinase; trans 90.0 0.16 5.6E-06 50.9 3.4 23 182-204 2-24 (214)
260 3crm_A TRNA delta(2)-isopenten 90.0 0.15 5.3E-06 54.7 3.3 25 181-205 6-30 (323)
261 1yqt_A RNAse L inhibitor; ATP- 90.0 1.3 4.5E-05 51.1 11.4 25 181-205 313-337 (538)
262 3be4_A Adenylate kinase; malar 89.9 0.16 5.6E-06 51.1 3.3 24 181-204 6-29 (217)
263 1ltq_A Polynucleotide kinase; 89.9 0.17 5.7E-06 53.6 3.6 23 181-203 3-25 (301)
264 3cf2_A TER ATPase, transitiona 89.9 0.39 1.3E-05 58.0 7.1 49 160-208 479-539 (806)
265 1sq5_A Pantothenate kinase; P- 89.8 0.18 6.3E-06 53.9 3.8 26 179-204 79-104 (308)
266 2xb4_A Adenylate kinase; ATP-b 89.8 0.17 5.7E-06 51.3 3.3 23 182-204 2-24 (223)
267 3r20_A Cytidylate kinase; stru 89.8 0.17 5.8E-06 51.9 3.4 25 180-204 9-33 (233)
268 2f1r_A Molybdopterin-guanine d 89.8 0.098 3.3E-06 51.0 1.4 25 181-205 3-27 (171)
269 3dm5_A SRP54, signal recogniti 89.7 0.56 1.9E-05 52.6 7.7 27 179-205 99-125 (443)
270 1j8m_F SRP54, signal recogniti 89.6 0.83 2.8E-05 48.5 8.7 37 180-217 98-134 (297)
271 3b9q_A Chloroplast SRP recepto 89.6 0.19 6.7E-06 53.6 3.7 26 180-205 100-125 (302)
272 2px0_A Flagellar biosynthesis 89.6 0.16 5.6E-06 54.0 3.1 26 180-205 105-130 (296)
273 2og2_A Putative signal recogni 89.5 0.29 9.9E-06 53.5 5.1 26 180-205 157-182 (359)
274 1np6_A Molybdopterin-guanine d 89.5 0.19 6.4E-06 49.1 3.3 25 180-204 6-30 (174)
275 2i3b_A HCR-ntpase, human cance 89.5 0.16 5.4E-06 50.3 2.7 23 182-204 3-25 (189)
276 1ak2_A Adenylate kinase isoenz 89.4 0.19 6.3E-06 51.3 3.3 25 180-204 16-40 (233)
277 2qmh_A HPR kinase/phosphorylas 89.3 0.21 7.3E-06 49.7 3.4 26 180-205 34-59 (205)
278 3nbx_X ATPase RAVA; AAA+ ATPas 89.2 0.25 8.5E-06 56.6 4.5 44 159-205 23-66 (500)
279 1cp2_A CP2, nitrogenase iron p 89.2 0.21 7.1E-06 51.9 3.6 37 181-218 2-38 (269)
280 2v3c_C SRP54, signal recogniti 89.2 0.2 7E-06 56.2 3.7 26 180-205 99-124 (432)
281 3end_A Light-independent proto 89.2 0.18 6.1E-06 53.7 3.1 39 179-218 40-78 (307)
282 3foz_A TRNA delta(2)-isopenten 89.1 0.19 6.5E-06 53.6 3.2 26 179-204 9-34 (316)
283 1yrb_A ATP(GTP)binding protein 89.0 0.22 7.5E-06 51.4 3.6 26 180-205 14-39 (262)
284 2onk_A Molybdate/tungstate ABC 89.0 0.21 7.1E-06 51.5 3.3 25 181-205 25-49 (240)
285 3zvl_A Bifunctional polynucleo 89.0 0.19 6.6E-06 56.2 3.3 26 179-204 257-282 (416)
286 1cr0_A DNA primase/helicase; R 89.0 0.28 9.6E-06 51.8 4.5 27 179-205 34-60 (296)
287 2dr3_A UPF0273 protein PH0284; 89.0 0.25 8.4E-06 50.3 3.9 37 180-217 23-59 (247)
288 3b85_A Phosphate starvation-in 88.9 0.18 6.2E-06 50.7 2.7 23 181-203 23-45 (208)
289 1a7j_A Phosphoribulokinase; tr 88.9 0.13 4.4E-06 54.7 1.6 26 179-204 4-29 (290)
290 1oix_A RAS-related protein RAB 88.9 0.24 8.4E-06 48.5 3.6 26 180-205 29-54 (191)
291 3e70_C DPA, signal recognition 88.9 0.25 8.6E-06 53.4 4.0 28 178-205 127-154 (328)
292 2dyk_A GTP-binding protein; GT 88.8 0.26 9E-06 46.1 3.7 24 181-204 2-25 (161)
293 2cbz_A Multidrug resistance-as 88.8 0.2 6.8E-06 51.5 3.0 26 180-205 31-56 (237)
294 1dce_A Protein (RAB geranylger 88.7 0.13 4.6E-06 59.9 1.9 37 559-597 481-517 (567)
295 3sr0_A Adenylate kinase; phosp 88.7 0.23 8E-06 49.8 3.4 23 182-204 2-24 (206)
296 2wji_A Ferrous iron transport 88.7 0.27 9.1E-06 46.8 3.7 23 181-203 4-26 (165)
297 1g41_A Heat shock protein HSLU 88.7 0.26 9E-06 55.3 4.1 28 180-207 50-77 (444)
298 1svm_A Large T antigen; AAA+ f 88.6 0.36 1.2E-05 53.2 5.1 26 178-203 167-192 (377)
299 1b0u_A Histidine permease; ABC 88.5 0.21 7.2E-06 52.1 3.0 26 180-205 32-57 (262)
300 2ga8_A Hypothetical 39.9 kDa p 88.5 0.37 1.3E-05 52.4 5.0 27 179-205 23-49 (359)
301 3gfo_A Cobalt import ATP-bindi 88.5 0.21 7.2E-06 52.5 3.0 26 180-205 34-59 (275)
302 3bgw_A DNAB-like replicative h 88.5 0.34 1.2E-05 54.6 4.9 48 169-217 186-233 (444)
303 1g8p_A Magnesium-chelatase 38 88.5 0.22 7.4E-06 53.8 3.2 46 159-205 25-70 (350)
304 2zej_A Dardarin, leucine-rich 88.4 0.21 7.2E-06 48.5 2.7 22 182-203 4-25 (184)
305 1zu4_A FTSY; GTPase, signal re 88.3 0.27 9.4E-06 52.9 3.8 38 179-217 104-141 (320)
306 2ce2_X GTPase HRAS; signaling 88.3 0.26 8.8E-06 46.1 3.3 23 182-204 5-27 (166)
307 2yhs_A FTSY, cell division pro 88.3 0.39 1.3E-05 54.6 5.2 26 180-205 293-318 (503)
308 1mv5_A LMRA, multidrug resista 88.3 0.24 8.2E-06 51.0 3.2 25 180-204 28-52 (243)
309 2d2e_A SUFC protein; ABC-ATPas 88.3 0.25 8.5E-06 51.2 3.4 24 180-203 29-52 (250)
310 4g1u_C Hemin import ATP-bindin 88.2 0.22 7.7E-06 52.1 3.0 26 180-205 37-62 (266)
311 1q3t_A Cytidylate kinase; nucl 88.2 0.28 9.4E-06 50.1 3.6 25 180-204 16-40 (236)
312 3l0o_A Transcription terminati 88.2 0.84 2.9E-05 50.1 7.5 39 166-205 162-200 (427)
313 1fzq_A ADP-ribosylation factor 88.1 0.29 1E-05 47.4 3.6 25 179-203 15-39 (181)
314 2afh_E Nitrogenase iron protei 88.1 0.22 7.6E-06 52.4 2.9 38 180-218 2-39 (289)
315 2zts_A Putative uncharacterize 88.1 0.16 5.5E-06 51.8 1.7 24 180-203 30-53 (251)
316 2f9l_A RAB11B, member RAS onco 88.1 0.26 9E-06 48.5 3.3 25 180-204 5-29 (199)
317 1g6h_A High-affinity branched- 88.0 0.24 8.1E-06 51.5 3.0 26 180-205 33-58 (257)
318 4a82_A Cystic fibrosis transme 88.0 3 0.0001 48.5 12.7 26 180-205 367-392 (578)
319 2qgz_A Helicase loader, putati 87.9 0.26 8.8E-06 52.8 3.3 26 180-205 152-177 (308)
320 2ff7_A Alpha-hemolysin translo 87.9 0.25 8.4E-06 51.1 3.0 26 180-205 35-60 (247)
321 3lda_A DNA repair protein RAD5 87.8 0.45 1.5E-05 52.8 5.2 50 168-217 165-220 (400)
322 1z2a_A RAS-related protein RAB 87.7 0.29 1E-05 46.1 3.3 25 180-204 5-29 (168)
323 1xqr_A HSPBP1 protein; armadil 87.7 9 0.00031 40.4 15.2 148 672-853 86-236 (296)
324 1u0j_A DNA replication protein 87.6 0.5 1.7E-05 49.3 5.1 37 167-203 90-127 (267)
325 2v9p_A Replication protein E1; 87.6 0.43 1.5E-05 50.9 4.7 26 179-204 125-150 (305)
326 2ghi_A Transport protein; mult 87.5 0.27 9.1E-06 51.3 3.0 26 180-205 46-71 (260)
327 3tpo_A Importin subunit alpha- 87.5 3.8 0.00013 46.8 13.2 176 672-853 256-447 (529)
328 4eaq_A DTMP kinase, thymidylat 87.5 0.32 1.1E-05 49.6 3.5 27 180-206 26-52 (229)
329 2wjg_A FEOB, ferrous iron tran 87.5 0.35 1.2E-05 46.7 3.8 24 180-203 7-30 (188)
330 2ixe_A Antigen peptide transpo 87.5 0.27 9.2E-06 51.6 3.0 26 180-205 45-70 (271)
331 3thx_A DNA mismatch repair pro 87.4 0.98 3.4E-05 55.5 8.4 21 180-200 662-682 (934)
332 2nzj_A GTP-binding protein REM 87.4 0.31 1E-05 46.4 3.2 25 180-204 4-28 (175)
333 3con_A GTPase NRAS; structural 87.4 0.31 1.1E-05 47.3 3.3 24 181-204 22-45 (190)
334 2ocp_A DGK, deoxyguanosine kin 87.3 0.3 1E-05 50.0 3.2 26 180-205 2-27 (241)
335 4f4c_A Multidrug resistance pr 87.3 1.5 5E-05 56.4 10.3 26 180-205 444-469 (1321)
336 1u8z_A RAS-related protein RAL 87.2 0.33 1.1E-05 45.5 3.3 24 181-204 5-28 (168)
337 2yz2_A Putative ABC transporte 87.2 0.29 9.8E-06 51.2 3.0 26 180-205 33-58 (266)
338 3fdi_A Uncharacterized protein 87.1 0.32 1.1E-05 48.5 3.3 28 181-208 7-34 (201)
339 2j37_W Signal recognition part 87.0 0.5 1.7E-05 54.0 5.2 27 179-205 100-126 (504)
340 1ls1_A Signal recognition part 87.0 0.34 1.2E-05 51.5 3.5 27 179-205 97-123 (295)
341 2ihy_A ABC transporter, ATP-bi 87.0 0.29 1E-05 51.5 3.0 26 180-205 47-72 (279)
342 2vp4_A Deoxynucleoside kinase; 86.9 0.26 8.8E-06 50.2 2.5 24 180-203 20-43 (230)
343 2ged_A SR-beta, signal recogni 86.8 0.34 1.2E-05 47.1 3.3 25 180-204 48-72 (193)
344 4fcg_A Uncharacterized protein 86.8 0.25 8.7E-06 53.1 2.5 40 557-597 120-159 (328)
345 1kao_A RAP2A; GTP-binding prot 86.7 0.36 1.2E-05 45.2 3.3 23 182-204 5-27 (167)
346 2gj8_A MNME, tRNA modification 86.7 0.36 1.2E-05 46.4 3.3 24 181-204 5-28 (172)
347 1z08_A RAS-related protein RAB 86.7 0.36 1.2E-05 45.6 3.2 25 180-204 6-30 (170)
348 1ek0_A Protein (GTP-binding pr 86.7 0.37 1.3E-05 45.4 3.3 23 182-204 5-27 (170)
349 1c1y_A RAS-related protein RAP 86.7 0.37 1.2E-05 45.3 3.3 23 182-204 5-27 (167)
350 3q85_A GTP-binding protein REM 86.7 0.36 1.2E-05 45.6 3.2 23 181-203 3-25 (169)
351 2p67_A LAO/AO transport system 86.6 0.61 2.1E-05 50.6 5.4 27 177-203 53-79 (341)
352 2erx_A GTP-binding protein DI- 86.6 0.37 1.3E-05 45.4 3.3 24 181-204 4-27 (172)
353 3eph_A TRNA isopentenyltransfe 86.6 0.36 1.2E-05 53.4 3.5 24 181-204 3-26 (409)
354 4akg_A Glutathione S-transfera 86.6 7.4 0.00025 53.1 16.6 208 183-474 1270-1537(2695)
355 2r9u_A Variable lymphocyte rec 86.6 0.26 9E-06 47.7 2.2 42 558-600 51-93 (174)
356 1z0j_A RAB-22, RAS-related pro 86.5 0.37 1.3E-05 45.4 3.3 24 181-204 7-30 (170)
357 1m7b_A RND3/RHOE small GTP-bin 86.5 0.37 1.3E-05 46.6 3.3 25 180-204 7-31 (184)
358 3q72_A GTP-binding protein RAD 86.3 0.32 1.1E-05 45.8 2.7 22 182-203 4-25 (166)
359 3ul1_B Importin subunit alpha- 86.3 4.9 0.00017 45.7 13.1 225 618-853 180-428 (510)
360 2lkc_A Translation initiation 86.2 0.48 1.6E-05 45.1 3.9 25 179-203 7-31 (178)
361 1ky3_A GTP-binding protein YPT 86.1 0.4 1.4E-05 45.8 3.3 26 179-204 7-32 (182)
362 1p5z_B DCK, deoxycytidine kina 86.1 0.28 9.5E-06 51.0 2.2 27 179-205 23-49 (263)
363 3ihw_A Centg3; RAS, centaurin, 86.1 0.4 1.4E-05 46.7 3.2 25 180-204 20-44 (184)
364 3tpo_A Importin subunit alpha- 86.1 6.6 0.00022 44.9 14.1 178 672-852 124-319 (529)
365 2fn4_A P23, RAS-related protei 86.1 0.4 1.4E-05 45.7 3.2 25 180-204 9-33 (181)
366 2iw3_A Elongation factor 3A; a 86.0 3 0.0001 51.4 11.5 23 180-202 461-483 (986)
367 2qm8_A GTPase/ATPase; G protei 86.0 0.71 2.4E-05 50.0 5.5 26 178-203 53-78 (337)
368 1g16_A RAS-related protein SEC 86.0 0.41 1.4E-05 45.1 3.2 24 181-204 4-27 (170)
369 3kta_A Chromosome segregation 86.0 0.42 1.4E-05 46.3 3.3 23 181-203 27-49 (182)
370 1wms_A RAB-9, RAB9, RAS-relate 85.9 0.42 1.4E-05 45.5 3.3 25 180-204 7-31 (177)
371 3k1j_A LON protease, ATP-depen 85.9 0.49 1.7E-05 55.6 4.5 45 159-206 42-86 (604)
372 1r2q_A RAS-related protein RAB 85.8 0.43 1.5E-05 44.9 3.3 24 181-204 7-30 (170)
373 2je0_A Acidic leucine-rich nuc 85.8 0.31 1.1E-05 45.4 2.2 39 560-598 60-98 (149)
374 2cxx_A Probable GTP-binding pr 85.8 0.41 1.4E-05 46.2 3.1 23 182-204 3-25 (190)
375 3c5c_A RAS-like protein 12; GD 85.7 0.43 1.5E-05 46.5 3.3 25 180-204 21-45 (187)
376 2zr9_A Protein RECA, recombina 85.7 0.44 1.5E-05 51.9 3.7 99 168-286 47-150 (349)
377 3ea0_A ATPase, para family; al 85.7 0.6 2E-05 47.4 4.5 39 180-218 4-43 (245)
378 1svi_A GTP-binding protein YSX 85.6 0.49 1.7E-05 46.0 3.6 26 179-204 22-47 (195)
379 3sop_A Neuronal-specific septi 85.6 0.41 1.4E-05 50.1 3.3 22 182-203 4-25 (270)
380 1nij_A Hypothetical protein YJ 85.6 0.4 1.4E-05 51.5 3.3 26 179-204 3-28 (318)
381 2h92_A Cytidylate kinase; ross 85.6 0.37 1.3E-05 48.3 2.8 24 181-204 4-27 (219)
382 2hxs_A RAB-26, RAS-related pro 85.6 0.43 1.5E-05 45.5 3.2 25 180-204 6-30 (178)
383 1nrj_B SR-beta, signal recogni 85.6 0.5 1.7E-05 47.0 3.8 26 179-204 11-36 (218)
384 1z0f_A RAB14, member RAS oncog 85.5 0.45 1.5E-05 45.2 3.3 25 180-204 15-39 (179)
385 1r8s_A ADP-ribosylation factor 85.5 0.44 1.5E-05 44.7 3.1 21 183-203 3-23 (164)
386 2orw_A Thymidine kinase; TMTK, 85.5 0.39 1.3E-05 47.2 2.8 24 181-204 4-27 (184)
387 4b8c_D Glucose-repressible alc 85.4 0.17 5.9E-06 60.9 0.2 45 560-605 243-287 (727)
388 3t1o_A Gliding protein MGLA; G 85.4 0.46 1.6E-05 46.0 3.3 28 180-207 14-41 (198)
389 2r8r_A Sensor protein; KDPD, P 85.4 0.43 1.5E-05 48.5 3.1 25 181-205 7-31 (228)
390 4dsu_A GTPase KRAS, isoform 2B 85.4 0.45 1.5E-05 45.8 3.3 24 181-204 5-28 (189)
391 3pqc_A Probable GTP-binding pr 85.4 0.45 1.5E-05 46.1 3.2 25 180-204 23-47 (195)
392 3kkq_A RAS-related protein M-R 85.4 0.46 1.6E-05 45.7 3.3 25 180-204 18-42 (183)
393 1upt_A ARL1, ADP-ribosylation 85.4 0.47 1.6E-05 44.8 3.3 25 180-204 7-31 (171)
394 3kjh_A CO dehydrogenase/acetyl 85.3 0.39 1.3E-05 48.9 2.9 35 183-218 3-37 (254)
395 1m2o_B GTP-binding protein SAR 85.3 0.46 1.6E-05 46.4 3.3 25 180-204 23-47 (190)
396 3tw8_B RAS-related protein RAB 85.3 0.39 1.3E-05 45.8 2.7 25 180-204 9-33 (181)
397 2axn_A 6-phosphofructo-2-kinas 85.3 0.48 1.6E-05 54.5 3.9 27 179-205 34-60 (520)
398 2y8e_A RAB-protein 6, GH09086P 85.2 0.47 1.6E-05 45.1 3.3 24 181-204 15-38 (179)
399 2bme_A RAB4A, RAS-related prot 85.2 0.47 1.6E-05 45.6 3.3 25 180-204 10-34 (186)
400 3m6a_A ATP-dependent protease 85.1 0.41 1.4E-05 55.4 3.2 48 159-206 82-134 (543)
401 3bc1_A RAS-related protein RAB 85.1 0.48 1.6E-05 45.7 3.3 25 180-204 11-35 (195)
402 2bbs_A Cystic fibrosis transme 85.1 0.41 1.4E-05 50.7 2.9 26 180-205 64-89 (290)
403 1mh1_A RAC1; GTP-binding, GTPa 85.0 0.49 1.7E-05 45.4 3.3 24 181-204 6-29 (186)
404 2a9k_A RAS-related protein RAL 85.0 0.49 1.7E-05 45.3 3.3 25 180-204 18-42 (187)
405 3nh6_A ATP-binding cassette SU 84.9 0.3 1E-05 52.2 1.8 26 180-205 80-105 (306)
406 3bwd_D RAC-like GTP-binding pr 84.9 0.5 1.7E-05 45.2 3.3 24 181-204 9-32 (182)
407 3t5g_A GTP-binding protein RHE 84.9 0.5 1.7E-05 45.3 3.3 25 180-204 6-30 (181)
408 2iwr_A Centaurin gamma 1; ANK 84.9 0.37 1.3E-05 46.1 2.3 24 181-204 8-31 (178)
409 2oil_A CATX-8, RAS-related pro 84.8 0.5 1.7E-05 45.9 3.3 25 180-204 25-49 (193)
410 2efe_B Small GTP-binding prote 84.7 0.51 1.7E-05 45.1 3.2 25 180-204 12-36 (181)
411 1f6b_A SAR1; gtpases, N-termin 84.7 0.68 2.3E-05 45.5 4.2 24 180-203 25-48 (198)
412 3llu_A RAS-related GTP-binding 84.6 0.55 1.9E-05 46.0 3.5 26 180-205 20-45 (196)
413 2atv_A RERG, RAS-like estrogen 84.5 0.52 1.8E-05 46.1 3.3 25 180-204 28-52 (196)
414 2bov_A RAla, RAS-related prote 84.5 0.52 1.8E-05 46.2 3.3 25 180-204 14-38 (206)
415 1ds9_A Outer arm dynein; leuci 84.5 0.16 5.4E-06 50.2 -0.6 40 559-600 43-82 (198)
416 3zq6_A Putative arsenical pump 84.5 0.44 1.5E-05 51.3 2.9 44 173-217 6-50 (324)
417 2gza_A Type IV secretion syste 84.5 0.68 2.3E-05 50.6 4.5 27 180-206 175-201 (361)
418 1lw7_A Transcriptional regulat 84.4 0.46 1.6E-05 52.0 3.1 26 180-205 170-195 (365)
419 2fz4_A DNA repair protein RAD2 84.4 4.2 0.00014 41.3 10.2 38 163-204 95-132 (237)
420 2g6b_A RAS-related protein RAB 84.3 0.55 1.9E-05 44.8 3.3 25 180-204 10-34 (180)
421 1vg8_A RAS-related protein RAB 84.3 0.53 1.8E-05 46.2 3.3 25 180-204 8-32 (207)
422 3clv_A RAB5 protein, putative; 84.2 0.54 1.9E-05 45.6 3.3 25 180-204 7-31 (208)
423 3thx_B DNA mismatch repair pro 84.2 2.2 7.6E-05 52.3 9.2 22 180-201 673-694 (918)
424 1g8f_A Sulfate adenylyltransfe 84.1 0.64 2.2E-05 53.2 4.2 45 161-205 375-420 (511)
425 3rlf_A Maltose/maltodextrin im 84.1 0.53 1.8E-05 51.8 3.3 26 180-205 29-54 (381)
426 1gwn_A RHO-related GTP-binding 84.1 0.55 1.9E-05 46.6 3.3 25 180-204 28-52 (205)
427 3g39_A Variable lymphocyte rec 84.1 0.47 1.6E-05 45.6 2.7 40 559-599 49-89 (170)
428 3vr4_D V-type sodium ATPase su 84.0 1.5 5.1E-05 49.2 6.9 40 166-206 138-177 (465)
429 1ksh_A ARF-like protein 2; sma 84.0 0.64 2.2E-05 44.8 3.6 26 179-204 17-42 (186)
430 2fg5_A RAB-22B, RAS-related pr 83.9 0.56 1.9E-05 45.7 3.2 25 180-204 23-47 (192)
431 3cbq_A GTP-binding protein REM 83.9 0.44 1.5E-05 46.8 2.4 22 180-201 23-44 (195)
432 1zbd_A Rabphilin-3A; G protein 83.9 0.58 2E-05 45.9 3.3 25 180-204 8-32 (203)
433 3oes_A GTPase rhebl1; small GT 83.9 0.57 2E-05 46.0 3.3 25 180-204 24-48 (201)
434 2cjw_A GTP-binding protein GEM 83.9 0.55 1.9E-05 46.0 3.1 23 180-202 6-28 (192)
435 3tqf_A HPR(Ser) kinase; transf 83.9 0.59 2E-05 45.4 3.2 24 181-204 17-40 (181)
436 2fh5_B SR-beta, signal recogni 83.8 0.57 2E-05 46.4 3.3 25 180-204 7-31 (214)
437 1pui_A ENGB, probable GTP-bind 83.8 0.32 1.1E-05 48.1 1.3 25 180-204 26-50 (210)
438 1a9n_A U2A', U2A'; complex (nu 83.8 0.36 1.2E-05 46.5 1.7 42 559-601 59-101 (176)
439 2it1_A 362AA long hypothetical 83.8 0.55 1.9E-05 51.3 3.3 26 180-205 29-54 (362)
440 2ew1_A RAS-related protein RAB 83.8 0.58 2E-05 46.3 3.3 25 180-204 26-50 (201)
441 2gf9_A RAS-related protein RAB 83.7 0.59 2E-05 45.3 3.3 25 180-204 22-46 (189)
442 3io3_A DEHA2D07832P; chaperone 83.7 0.62 2.1E-05 50.7 3.7 33 172-205 11-43 (348)
443 3reg_A RHO-like small GTPase; 83.7 0.6 2E-05 45.5 3.3 25 180-204 23-47 (194)
444 3tkl_A RAS-related protein RAB 83.7 0.6 2.1E-05 45.3 3.3 25 180-204 16-40 (196)
445 1g29_1 MALK, maltose transport 83.6 0.57 1.9E-05 51.5 3.4 26 180-205 29-54 (372)
446 2v9t_B SLIT homolog 2 protein 83.6 0.46 1.6E-05 47.8 2.4 38 560-597 52-89 (220)
447 1zd9_A ADP-ribosylation factor 83.6 0.61 2.1E-05 45.3 3.3 25 180-204 22-46 (188)
448 2www_A Methylmalonic aciduria 83.6 0.65 2.2E-05 50.5 3.8 25 179-203 73-97 (349)
449 2r9u_A Variable lymphocyte rec 83.5 0.56 1.9E-05 45.3 3.0 41 559-600 76-117 (174)
450 3cwq_A Para family chromosome 83.5 0.6 2.1E-05 46.7 3.3 35 182-218 2-37 (209)
451 3nmz_A APC variant protein; pr 83.5 9.9 0.00034 42.8 13.6 198 622-853 242-448 (458)
452 1w8a_A SLIT protein; signaling 83.5 0.45 1.5E-05 46.7 2.3 39 560-598 50-88 (192)
453 2ell_A Acidic leucine-rich nuc 83.4 0.48 1.6E-05 45.1 2.4 39 560-598 67-105 (168)
454 2a5j_A RAS-related protein RAB 83.4 0.62 2.1E-05 45.3 3.3 25 180-204 21-45 (191)
455 3e6j_A Variable lymphocyte rec 83.4 0.46 1.6E-05 48.1 2.4 39 559-598 107-145 (229)
456 1h65_A Chloroplast outer envel 83.4 1.2 4E-05 46.3 5.6 28 177-204 36-63 (270)
457 1x3s_A RAS-related protein RAB 83.3 0.64 2.2E-05 45.0 3.3 24 181-204 16-39 (195)
458 2q3h_A RAS homolog gene family 83.2 0.6 2E-05 45.7 3.1 25 180-204 20-44 (201)
459 1z06_A RAS-related protein RAB 83.2 0.64 2.2E-05 45.0 3.3 25 180-204 20-44 (189)
460 4dzz_A Plasmid partitioning pr 83.2 0.58 2E-05 46.1 3.0 36 181-217 2-38 (206)
461 2p5s_A RAS and EF-hand domain 83.1 0.64 2.2E-05 45.6 3.2 25 180-204 28-52 (199)
462 2qu8_A Putative nucleolar GTP- 83.1 0.74 2.5E-05 46.3 3.8 25 179-203 28-52 (228)
463 3cmu_A Protein RECA, recombina 83.1 0.9 3.1E-05 59.8 5.4 97 169-285 1414-1515(2050)
464 2je0_A Acidic leucine-rich nuc 83.0 0.4 1.4E-05 44.6 1.6 41 557-598 81-123 (149)
465 3dz8_A RAS-related protein RAB 83.0 0.63 2.1E-05 45.2 3.1 25 180-204 23-47 (191)
466 1zj6_A ADP-ribosylation factor 83.0 0.67 2.3E-05 44.8 3.3 25 179-203 15-39 (187)
467 1bif_A 6-phosphofructo-2-kinas 83.0 0.64 2.2E-05 52.8 3.6 26 180-205 39-64 (469)
468 3nmw_A APC variant protein; AR 82.9 12 0.00042 40.4 13.7 198 622-853 126-332 (354)
469 2c61_A A-type ATP synthase non 82.9 1.4 4.9E-05 49.5 6.3 38 167-205 140-177 (469)
470 2o52_A RAS-related protein RAB 82.9 0.63 2.1E-05 45.8 3.1 24 180-203 25-48 (200)
471 3ug7_A Arsenical pump-driving 82.9 1.1 3.8E-05 48.6 5.3 35 171-205 17-51 (349)
472 1ogq_A PGIP-2, polygalacturona 82.8 0.39 1.3E-05 51.1 1.6 40 559-598 96-135 (313)
473 3gqb_B V-type ATP synthase bet 82.8 1.7 5.8E-05 48.7 6.8 39 166-205 134-172 (464)
474 2h17_A ADP-ribosylation factor 82.8 0.62 2.1E-05 44.8 3.0 25 180-204 21-45 (181)
475 4bas_A ADP-ribosylation factor 82.8 0.69 2.3E-05 45.0 3.3 26 179-204 16-41 (199)
476 2bcg_Y Protein YP2, GTP-bindin 82.7 0.67 2.3E-05 45.6 3.2 25 180-204 8-32 (206)
477 2yv5_A YJEQ protein; hydrolase 82.7 1.1 3.8E-05 47.6 5.2 24 181-205 166-189 (302)
478 2b6h_A ADP-ribosylation factor 82.7 0.58 2E-05 45.7 2.7 24 180-203 29-52 (192)
479 2ell_A Acidic leucine-rich nuc 82.7 0.63 2.2E-05 44.2 2.9 44 557-601 88-133 (168)
480 4dkx_A RAS-related protein RAB 82.7 0.68 2.3E-05 46.7 3.3 23 182-204 15-37 (216)
481 2ifg_A High affinity nerve gro 82.6 0.55 1.9E-05 50.5 2.8 43 558-600 50-92 (347)
482 1tq4_A IIGP1, interferon-induc 82.6 0.75 2.6E-05 51.2 3.9 26 179-204 68-93 (413)
483 4edh_A DTMP kinase, thymidylat 82.6 0.76 2.6E-05 46.2 3.6 27 180-206 6-32 (213)
484 1moz_A ARL1, ADP-ribosylation 82.6 0.45 1.6E-05 45.6 1.9 25 179-203 17-41 (183)
485 3lxx_A GTPase IMAP family memb 82.5 0.69 2.3E-05 47.1 3.3 26 179-204 28-53 (239)
486 2atx_A Small GTP binding prote 82.5 0.7 2.4E-05 44.9 3.2 25 180-204 18-42 (194)
487 3def_A T7I23.11 protein; chlor 82.4 1.3 4.6E-05 45.7 5.6 27 178-204 34-60 (262)
488 1p9r_A General secretion pathw 82.4 1.1 3.8E-05 49.9 5.2 38 166-205 155-192 (418)
489 4gzl_A RAS-related C3 botulinu 82.4 0.71 2.4E-05 45.6 3.3 39 165-204 16-54 (204)
490 1ega_A Protein (GTP-binding pr 82.3 0.77 2.6E-05 48.8 3.7 24 180-203 8-31 (301)
491 2gf0_A GTP-binding protein DI- 82.3 0.94 3.2E-05 44.0 4.1 25 180-204 8-32 (199)
492 1a9n_A U2A', U2A'; complex (nu 82.3 0.61 2.1E-05 44.8 2.7 42 559-601 83-126 (176)
493 2j1l_A RHO-related GTP-binding 82.3 0.67 2.3E-05 46.2 3.0 24 180-203 34-57 (214)
494 3cr8_A Sulfate adenylyltranfer 82.3 0.51 1.7E-05 54.7 2.4 26 180-205 369-394 (552)
495 3g39_A Variable lymphocyte rec 82.3 0.67 2.3E-05 44.5 2.9 40 558-598 72-112 (170)
496 3gd7_A Fusion complex of cysti 82.3 0.68 2.3E-05 51.1 3.3 25 180-204 47-71 (390)
497 2fv8_A H6, RHO-related GTP-bin 82.2 0.72 2.5E-05 45.6 3.2 25 180-204 25-49 (207)
498 2j0v_A RAC-like GTP-binding pr 82.2 0.73 2.5E-05 45.6 3.3 25 180-204 9-33 (212)
499 2il1_A RAB12; G-protein, GDP, 82.1 0.6 2.1E-05 45.5 2.6 25 180-204 26-50 (192)
500 1u94_A RECA protein, recombina 82.1 0.67 2.3E-05 50.6 3.2 49 168-217 49-99 (356)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.1e-40 Score=393.16 Aligned_cols=305 Identities=17% Similarity=0.194 Sum_probs=227.8
Q ss_pred CcCccHHHHHHHHHhcC--CCceEEEEEcCCCCCHHHHHHHHHh----CCCCCccCceEEEeeeeeeecccccCCCchHH
Q 002972 161 YPISSKSKFLRKLLEQE--ETHQVILIVGLSGIGKSCLARQVAS----DPPERFVGGAVELGFGQWCSRAACNGSKSDYQ 234 (862)
Q Consensus 161 ~g~~~~~~~l~~LL~~~--~~~~vI~I~G~gGiGKTtLA~~v~~----~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~ 234 (862)
|||++..+.|..+|..+ .++++|+|+||||+||||||+++|+ ..+.+| ++++|++++. ......
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F-~~~~wv~vs~---------~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINY-DSIVWLKDSG---------TAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTB-SEEEEEECCC---------CSTTHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccC-CcEEEEEECC---------CCCCCH
Confidence 69998888888877543 3589999999999999999999997 445677 5677765521 111355
Q ss_pred HHHHHHHHHHHHHhcc-ccccCCCCCCHHHHHHHHHHHhcCC-CeEEEEEcCCCchHHHHHhhccCCCceEEEEccchhh
Q 002972 235 KRLARKISKFLVQIGF-WKKIKDENSDLEYLCCLLQEALYGK-SILILLDDVWEQDIVERFAKLYDNDCKYLVTTRNEAV 312 (862)
Q Consensus 235 ~~l~~~i~~~l~~lg~-~~~~~~~~~~~~~l~~~l~~~L~~k-r~LLVLDDV~~~~~~~~l~~~~~~gsrILvTTR~~~v 312 (862)
..+++.|...+..... .........+.+.+...+++.|.++ ||||||||||+.+++ .+.. .+||+||||||++.+
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~--~~gs~ilvTTR~~~v 277 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ--ELRLRCLVTTRDVEI 277 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH--HTTCEEEEEESBGGG
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc--cCCCEEEEEcCCHHH
Confidence 6677777655532110 0001112235677889999999996 999999999998876 2222 389999999999999
Q ss_pred hhhcc-c---ccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHHHHhhhhhccCCHHHHHHHHHH
Q 002972 313 YEITE-A---EKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMGKALRKELRSEKWEKAITD 387 (862)
Q Consensus 313 a~~~~-~---~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~~ig~~L~~~~~~~~W~~~l~~ 387 (862)
+..++ . ..+ +|+.+|||+||.+.++... .++.+++++++|+++|+|+||||+++|+.|+.+ + |+.+ +.
T Consensus 278 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~ 350 (549)
T 2a5y_B 278 SNAASQTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQ 350 (549)
T ss_dssp GGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HH
T ss_pred HHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HH
Confidence 98764 2 223 8999999999999876432 246778899999999999999999999999764 2 5443 44
Q ss_pred hhhhhccCCCCCCccchhhhhcccccccchhhhhccCcHHHHHHHH-----------HhcccCCCCCCChHHHHHHHHHh
Q 002972 388 LSTFATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDSRRLFI-----------ALAALSWAEPVPEACLEAIWSIL 456 (862)
Q Consensus 388 L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L~~~~k~cfl-----------~lsiFp~~~~i~~~~L~~lW~a~ 456 (862)
+....... ....|..+|.+||++||+++|.||+ |||+||+++.|+ +.+|+++
T Consensus 351 l~~~l~~~-------------~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~ 413 (549)
T 2a5y_B 351 LNNKLESR-------------GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCV 413 (549)
T ss_dssp HHHHHHHH-------------CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHH
T ss_pred hHHHhhcc-------------cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeee
Confidence 43322110 1136888999999999999999999 999999999988 7899998
Q ss_pred --hh---------cchHHHHHHHHHHCCCCcccC--CCCcEEeCHHHHHHHHHhhcccc
Q 002972 457 --VQ---------KSLFSLAVCKLVEGSLLMKDD--TDPLYQVHDMVSLYLDSKTNDSI 502 (862)
Q Consensus 457 --g~---------~~~~e~~l~~L~~rsLl~~~~--~~~~~~mHdLVr~~a~~~~~e~~ 502 (862)
|. .+...+++++|+++||++... ...+|+|||+||+|+++++.++.
T Consensus 414 ~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 414 IPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp SCC-------CCCTHHHHHHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred ccceeccCCCCCCHHHHHHHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 42 112334999999999999864 34579999999999999887653
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.4e-37 Score=396.50 Aligned_cols=320 Identities=22% Similarity=0.315 Sum_probs=244.7
Q ss_pred cccCCCcCccHHHHHHHHHhc-CCCceEEEEEcCCCCCHHHHHHHHHhCC---CCCccCceEEEeeeeeeecccccCCCc
Q 002972 156 KAEQGYPISSKSKFLRKLLEQ-EETHQVILIVGLSGIGKSCLARQVASDP---PERFVGGAVELGFGQWCSRAACNGSKS 231 (862)
Q Consensus 156 ~~~~~~g~~~~~~~l~~LL~~-~~~~~vI~I~G~gGiGKTtLA~~v~~~~---~~~F~~~~~~~~~~~w~~~~~~~~s~~ 231 (862)
.....+||++..+.|..+|.. ++++++|+|+||||+||||||+++|++. ..+|+++++|+++.. ...
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~---------~~~ 192 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK---------QDK 192 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS---------CCH
T ss_pred CCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC---------cCc
Confidence 345577999999998888754 3468999999999999999999999984 567999999887732 112
Q ss_pred hHHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhcCC--CeEEEEEcCCCchHHHHHhhccCCCceEEEEccc
Q 002972 232 DYQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGK--SILILLDDVWEQDIVERFAKLYDNDCKYLVTTRN 309 (862)
Q Consensus 232 ~~~~~l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~L~~k--r~LLVLDDV~~~~~~~~l~~~~~~gsrILvTTR~ 309 (862)
......+..+...+...+. .......+.+.+...++..+.++ ||||||||||+..+|+. +++||+||||||+
T Consensus 193 ~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~----~~~~~~ilvTtR~ 266 (1249)
T 3sfz_A 193 SGLLMKLQNLCMRLDQEES--FSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKA----FDNQCQILLTTRD 266 (1249)
T ss_dssp HHHHHHHHHHHHHHTTTCT--TCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTT----TCSSCEEEEEESS
T ss_pred hHHHHHHHHHHHHhhhhcc--cccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHh----hcCCCEEEEEcCC
Confidence 2223334444443332221 11223457888999999999987 99999999999987764 4789999999999
Q ss_pred hhhhhh-ccccc---c--cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHHHHhhhhhccCCHHHHHH
Q 002972 310 EAVYEI-TEAEK---V--ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMGKALRKELRSEKWEK 383 (862)
Q Consensus 310 ~~va~~-~~~~~---~--~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~~ig~~L~~~~~~~~W~~ 383 (862)
+.++.. .+... + +|+++||++||...++. ..+++++.+++|+++|+|+||||.++|++|+.+. ..|..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~----~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~ 340 (1249)
T 3sfz_A 267 KSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNM----KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAY 340 (1249)
T ss_dssp TTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTS----CSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHH
T ss_pred HHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCC----ChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHH
Confidence 999853 23222 2 39999999999987742 2345567899999999999999999999999754 47999
Q ss_pred HHHHhhhhhccCCCCCCccchhhhhcccccccchhhhhccCcHHHHHHHHHhcccCCCCCCChHHHHHHHHHhhhcchHH
Q 002972 384 AITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDSRRLFIALAALSWAEPVPEACLEAIWSILVQKSLFS 463 (862)
Q Consensus 384 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L~~~~k~cfl~lsiFp~~~~i~~~~L~~lW~a~g~~~~~e 463 (862)
+++.+.......... ........+..+|.+||+.||+++|.||+|||+||+++.|+.+.++.+|.+++ ..++
T Consensus 341 ~l~~l~~~~~~~~~~------~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~--~~~~ 412 (1249)
T 3sfz_A 341 YLRQLQNKQFKRIRK------SSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLET--EEVE 412 (1249)
T ss_dssp HHHHHHSCCCCCSSC------TTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCH--HHHH
T ss_pred HHHHHhhhhhhhccc------ccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCH--HHHH
Confidence 999886543211110 00111136888999999999999999999999999999999999999997543 4578
Q ss_pred HHHHHHHHCCCCcccCCC--CcEEeCHHHHHHHHHhhcccchh
Q 002972 464 LAVCKLVEGSLLMKDDTD--PLYQVHDMVSLYLDSKTNDSIQM 504 (862)
Q Consensus 464 ~~l~~L~~rsLl~~~~~~--~~~~mHdLVr~~a~~~~~e~~~~ 504 (862)
.++++|+++|||+...+. .+|+|||+||+|+++++.++...
T Consensus 413 ~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~~~~ 455 (1249)
T 3sfz_A 413 DILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQLQD 455 (1249)
T ss_dssp HHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGGHHH
T ss_pred HHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHHHHH
Confidence 899999999999976433 25999999999999998776443
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.1e-35 Score=356.99 Aligned_cols=284 Identities=19% Similarity=0.240 Sum_probs=218.4
Q ss_pred CCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCC--CCCccCceEEEeeeeeeecccccCCCchHHHHH
Q 002972 160 GYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDP--PERFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (862)
Q Consensus 160 ~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~--~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l 237 (862)
.+||+...+.|..+|...++.++|+|+||||+||||||+++|++. +.+|+++++|++++ .......+
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs-----------~~~d~~~I 198 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK-----------NCNSPETV 198 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECC-----------CSSSHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeC-----------CCCCHHHH
Confidence 479999888888888764558999999999999999999999865 46799889988773 22334566
Q ss_pred HHHHHHHHHHhccccccCCC-----CCCHHHHHHHHHHHh---cCCCeEEEEEcCCCchHHHHHhhccCCCceEEEEccc
Q 002972 238 ARKISKFLVQIGFWKKIKDE-----NSDLEYLCCLLQEAL---YGKSILILLDDVWEQDIVERFAKLYDNDCKYLVTTRN 309 (862)
Q Consensus 238 ~~~i~~~l~~lg~~~~~~~~-----~~~~~~l~~~l~~~L---~~kr~LLVLDDV~~~~~~~~l~~~~~~gsrILvTTR~ 309 (862)
...|...+...+........ ..+.+.+...+++.| .+||+||||||||+.++|+.+ ++||+||||||+
T Consensus 199 L~~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f----~pGSRILVTTRd 274 (1221)
T 1vt4_I 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF----NLSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH----HSSCCEEEECSC
T ss_pred HHHHHHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh----CCCeEEEEeccC
Confidence 66666655554311000111 113456667777766 679999999999999988865 489999999999
Q ss_pred hhhhhhccc---ccc-------cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHHHHhhhhhccC-CH
Q 002972 310 EAVYEITEA---EKV-------ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMGKALRKEL-RS 378 (862)
Q Consensus 310 ~~va~~~~~---~~~-------~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~~ig~~L~~~~-~~ 378 (862)
+.++..+.. ..+ +|+.+||++||.+.+... . .+...++ |+|+||||.++|+.|+.+. +.
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~----~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ 344 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR----P---QDLPREV---LTTNPRRLSIIAESIRDGLATW 344 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC----T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSH
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC----H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCCH
Confidence 998853321 122 589999999999874321 1 2233333 9999999999999999653 56
Q ss_pred HHHHHHHHHhhhhhccCCCCCCccchhhhhcccccccchhhhhccCcHHH-HHHHHHhcccCCCCCCChHHHHHHHHHhh
Q 002972 379 EKWEKAITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDS-RRLFIALAALSWAEPVPEACLEAIWSILV 457 (862)
Q Consensus 379 ~~W~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L~~~~-k~cfl~lsiFp~~~~i~~~~L~~lW~a~g 457 (862)
..|... . ...|..+|.+||+.||++. |+||++||+||+++.|+.+.++.+|.+++
T Consensus 345 eeW~~~----~--------------------~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG 400 (1221)
T 1vt4_I 345 DNWKHV----N--------------------CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400 (1221)
T ss_dssp HHHHHC----S--------------------CHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC
T ss_pred HHHhcC----C--------------------hhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC
Confidence 778642 0 0268889999999999999 99999999999999999999999999876
Q ss_pred hcchHHHHHHHHHHCCCCcccCCCCcEEeCHHHHHH
Q 002972 458 QKSLFSLAVCKLVEGSLLMKDDTDPLYQVHDMVSLY 493 (862)
Q Consensus 458 ~~~~~e~~l~~L~~rsLl~~~~~~~~~~mHdLVr~~ 493 (862)
. +.++.++++|+++|||+..+...+|+||||+++.
T Consensus 401 e-edAe~~L~eLvdRSLLq~d~~~~rYrMHDLllEL 435 (1221)
T 1vt4_I 401 K-SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435 (1221)
T ss_dssp S-HHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHH
T ss_pred H-HHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHH
Confidence 3 3578899999999999987556689999999883
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=5.3e-34 Score=339.52 Aligned_cols=315 Identities=22% Similarity=0.322 Sum_probs=236.7
Q ss_pred cccCCCcCccHHHHHHHHHhcC-CCceEEEEEcCCCCCHHHHHHHHHhCC---CCCccCceEEEeeeeeeecccccCCCc
Q 002972 156 KAEQGYPISSKSKFLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDP---PERFVGGAVELGFGQWCSRAACNGSKS 231 (862)
Q Consensus 156 ~~~~~~g~~~~~~~l~~LL~~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~---~~~F~~~~~~~~~~~w~~~~~~~~s~~ 231 (862)
.+...+||+...+.+..++... ++.++|+|+||||+||||||.+++++. +.+|+++++|+++... .
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~--------~-- 191 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ--------D-- 191 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC--------C--
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC--------c--
Confidence 3456789999999999888753 457899999999999999999999876 5678888998876421 1
Q ss_pred hHHHHHHHHHHHHHHHhccccc-cCCCCCCHHHHHHHHHHHhcC--CCeEEEEEcCCCchHHHHHhhccCCCceEEEEcc
Q 002972 232 DYQKRLARKISKFLVQIGFWKK-IKDENSDLEYLCCLLQEALYG--KSILILLDDVWEQDIVERFAKLYDNDCKYLVTTR 308 (862)
Q Consensus 232 ~~~~~l~~~i~~~l~~lg~~~~-~~~~~~~~~~l~~~l~~~L~~--kr~LLVLDDV~~~~~~~~l~~~~~~gsrILvTTR 308 (862)
...+...+...+..++.... ......+.+.+...++..+.+ +++||||||||+...++ ++++||+||||||
T Consensus 192 --~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~----~l~~~~~ilvTsR 265 (591)
T 1z6t_A 192 --KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLK----AFDSQCQILLTTR 265 (591)
T ss_dssp --HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHH----TTCSSCEEEEEES
T ss_pred --hHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHH----HhcCCCeEEEECC
Confidence 12334444443334332101 122345778888889888887 78999999999977665 3578999999999
Q ss_pred chhhhhhccc--ccc----cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHHHHhhhhhccCCHHHHH
Q 002972 309 NEAVYEITEA--EKV----ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMGKALRKELRSEKWE 382 (862)
Q Consensus 309 ~~~va~~~~~--~~~----~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~~ig~~L~~~~~~~~W~ 382 (862)
+..++..+.. ..+ +|+.+|+++||...++.. .+...+.+.+|+++|+|+||||.++|+.++... ..|.
T Consensus 266 ~~~~~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~ 339 (591)
T 1z6t_A 266 DKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMK----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWE 339 (591)
T ss_dssp CGGGGTTCCSCEEEEECCSSCCHHHHHHHHHHHHTSC----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHH
T ss_pred CcHHHHhcCCCceEeecCCCCCHHHHHHHHHHHhCCC----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHH
Confidence 9998765432 222 699999999999887632 222346788999999999999999999998753 4799
Q ss_pred HHHHHhhhhhccCCCCCCccchhhhhcccccccchhhhhccCcHHHHHHHHHhcccCCCCCCChHHHHHHHHHhhhcchH
Q 002972 383 KAITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDSRRLFIALAALSWAEPVPEACLEAIWSILVQKSLF 462 (862)
Q Consensus 383 ~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L~~~~k~cfl~lsiFp~~~~i~~~~L~~lW~a~g~~~~~ 462 (862)
.+++.+.......... .......++..+|..||+.||++.|.||++||+||++..|+.+.+..+|.... ..+
T Consensus 340 ~~l~~l~~~~~~~~~~------~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~--~~~ 411 (591)
T 1z6t_A 340 YYLKQLQNKQFKRIRK------SSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMET--EEV 411 (591)
T ss_dssp HHHHHHHSCCCCCSSC------CCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCH--HHH
T ss_pred HHHHHHHHhHHHHhhh------ccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCH--HHH
Confidence 9888876532110000 00011136788999999999999999999999999999999999999997542 246
Q ss_pred HHHHHHHHHCCCCcccCC--CCcEEeCHHHHHHHHHhhcc
Q 002972 463 SLAVCKLVEGSLLMKDDT--DPLYQVHDMVSLYLDSKTND 500 (862)
Q Consensus 463 e~~l~~L~~rsLl~~~~~--~~~~~mHdLVr~~a~~~~~e 500 (862)
+.++++|+++|||+...+ ..+|+||++||+|++++..+
T Consensus 412 ~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~~ 451 (591)
T 1z6t_A 412 EDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNCS 451 (591)
T ss_dssp HHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTGG
T ss_pred HHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhhh
Confidence 789999999999986532 34799999999999998544
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.57 E-value=1.5e-13 Score=151.20 Aligned_cols=292 Identities=14% Similarity=0.140 Sum_probs=171.2
Q ss_pred ccCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHH
Q 002972 157 AEQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKR 236 (862)
Q Consensus 157 ~~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~ 236 (862)
+...+||+...+.+..++... +++.|+|++|+|||||++++++... ++|+++..... . ........
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~---~~v~i~G~~G~GKT~Ll~~~~~~~~------~~~~~~~~~~~--~---~~~~~~~~ 76 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENY---PLTLLLGIRRVGKSSLLRAFLNERP------GILIDCRELYA--E---RGHITREE 76 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHC---SEEEEECCTTSSHHHHHHHHHHHSS------EEEEEHHHHHH--T---TTCBCHHH
T ss_pred hHhcCChHHHHHHHHHHHhcC---CeEEEECCCcCCHHHHHHHHHHHcC------cEEEEeecccc--c---ccCCCHHH
Confidence 356789999999998888753 6999999999999999999998751 55555421100 0 00001223
Q ss_pred HHHHHHHHHHH-------h-------ccccccCCCCCCHHHHHHHHHHHhcC-CCeEEEEEcCCCchH---------HHH
Q 002972 237 LARKISKFLVQ-------I-------GFWKKIKDENSDLEYLCCLLQEALYG-KSILILLDDVWEQDI---------VER 292 (862)
Q Consensus 237 l~~~i~~~l~~-------l-------g~~~~~~~~~~~~~~l~~~l~~~L~~-kr~LLVLDDV~~~~~---------~~~ 292 (862)
+.+.+...+.. . +. .......+..++...+.+.... ++++|||||++.... +..
T Consensus 77 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 77 LIKELQSTISPFQKFQSKFKISLNLKFL--TLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHSCSHHHHHHHHTCCCCCGGG--TSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHhHhhhceeEEEecce--eeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 33333332211 0 00 0000123566667777666653 489999999976432 333
Q ss_pred Hhhcc--CCCceEEEEccchhh-hhh----------ccc--ccc---cCChhhHHHHHHHHhhhcccccCcchHHHHHHH
Q 002972 293 FAKLY--DNDCKYLVTTRNEAV-YEI----------TEA--EKV---ELSKDDIMEISKSILLYHSLLAEEELPAAAESL 354 (862)
Q Consensus 293 l~~~~--~~gsrILvTTR~~~v-a~~----------~~~--~~~---~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~I 354 (862)
+.... .++.++|+|++...+ ... .+. ..+ ||+.+|+.+++...+...+.. -.++.+..|
T Consensus 155 L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~---~~~~~~~~i 231 (350)
T 2qen_A 155 FAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD---VPENEIEEA 231 (350)
T ss_dssp HHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHH
T ss_pred HHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHH
Confidence 33222 257889999887543 111 111 122 899999999987765432211 123577899
Q ss_pred HhhhCCchHHHHHHhhhhhccCCHHHHH-HHHHHhhhhhccCCCCCCccchhhhhcccccccchhhhhccCcHHHHHHHH
Q 002972 355 LERCGHHPLTVAVMGKALRKELRSEKWE-KAITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDSRRLFI 433 (862)
Q Consensus 355 v~~cgGLPLAI~~ig~~L~~~~~~~~W~-~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L~~~~k~cfl 433 (862)
++.|+|+|+++..++..+....+...+. .+.+...... . ..+. .+.+ + ++..+..+.
T Consensus 232 ~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~--~~l~---~l~~-~-~~~~~~~l~ 289 (350)
T 2qen_A 232 VELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLI---------------M--GELE---ELRR-R-SPRYVDILR 289 (350)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH---------------H--HHHH---HHHH-H-CHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHH---------------H--HHHH---HHHh-C-ChhHHHHHH
Confidence 9999999999999887654222222221 1111111000 0 0111 1111 2 788899999
Q ss_pred HhcccCCCCCCChHHHHHHHHHh--h-hcchHHHHHHHHHHCCCCcccCCCCcEEe-CHHHHHHHH
Q 002972 434 ALAALSWAEPVPEACLEAIWSIL--V-QKSLFSLAVCKLVEGSLLMKDDTDPLYQV-HDMVSLYLD 495 (862)
Q Consensus 434 ~lsiFp~~~~i~~~~L~~lW~a~--g-~~~~~e~~l~~L~~rsLl~~~~~~~~~~m-HdLVr~~a~ 495 (862)
.+|+ + .++...+....... + .......+++.|.+.+||...+ ..|++ |++++.|++
T Consensus 290 ~la~---g-~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~--~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 290 AIAL---G-YNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEED--NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHT---T-CCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEET--TEEEESSHHHHHHHT
T ss_pred HHHh---C-CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEecC--CEEEEecHHHHHHHc
Confidence 9988 2 23545554443222 1 2234668999999999998764 35665 889998874
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.53 E-value=5.7e-13 Score=146.94 Aligned_cols=293 Identities=16% Similarity=0.190 Sum_probs=167.4
Q ss_pred ccCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHH
Q 002972 157 AEQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKR 236 (862)
Q Consensus 157 ~~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~ 236 (862)
+...+||+...+.+.. +.. +++.|+|++|+|||+|++++++.... .++|+++...- +....+.......
T Consensus 12 ~~~~~gR~~el~~L~~-l~~----~~v~i~G~~G~GKT~L~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~ 80 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA----PITLVLGLRRTGKSSIIKIGINELNL----PYIYLDLRKFE--ERNYISYKDFLLE 80 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS----SEEEEEESTTSSHHHHHHHHHHHHTC----CEEEEEGGGGT--TCSCCCHHHHHHH
T ss_pred HHHhcChHHHHHHHHH-hcC----CcEEEECCCCCCHHHHHHHHHHhcCC----CEEEEEchhhc--cccCCCHHHHHHH
Confidence 3567799988888888 764 59999999999999999999987542 24566553210 0000011222333
Q ss_pred HHHHHHHHH----------HHh-cccc-c----cC---CCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCc------hHHH
Q 002972 237 LARKISKFL----------VQI-GFWK-K----IK---DENSDLEYLCCLLQEALYGKSILILLDDVWEQ------DIVE 291 (862)
Q Consensus 237 l~~~i~~~l----------~~l-g~~~-~----~~---~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~------~~~~ 291 (862)
+.+.+...+ ..+ +... . .. ........+...+.+.-. ++++|||||++.. +.+.
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~ 159 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLP 159 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHH
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHH
Confidence 333332110 000 0000 0 00 012345555555554322 4899999999753 2223
Q ss_pred HHhhcc--CCCceEEEEccchhhhh-h----------ccc--ccc---cCChhhHHHHHHHHhhhcccccCcchHHHHHH
Q 002972 292 RFAKLY--DNDCKYLVTTRNEAVYE-I----------TEA--EKV---ELSKDDIMEISKSILLYHSLLAEEELPAAAES 353 (862)
Q Consensus 292 ~l~~~~--~~gsrILvTTR~~~va~-~----------~~~--~~~---~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~ 353 (862)
.+.... .++.++|+|+|...... . .+. ..+ ||+.+|+.+++...+...+... +.. ..
T Consensus 160 ~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~-~~~----~~ 234 (357)
T 2fna_A 160 ALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF-KDY----EV 234 (357)
T ss_dssp HHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC-CCH----HH
T ss_pred HHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC-CcH----HH
Confidence 332222 24778999999765321 1 111 122 8999999999887654322222 221 78
Q ss_pred HHhhhCCchHHHHHHhhhhhccCCHHHHHH-HHHHhhhhhccCCCCCCccchhhhhcccccccchh-hhh--ccCcHHHH
Q 002972 354 LLERCGHHPLTVAVMGKALRKELRSEKWEK-AITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFE-FSL--EAMPRDSR 429 (862)
Q Consensus 354 Iv~~cgGLPLAI~~ig~~L~~~~~~~~W~~-~l~~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~-lSy--~~L~~~~k 429 (862)
|++.|+|+|+++..++..+....+...|.. +.+.... .+...+. +.+ ..|++..+
T Consensus 235 i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~~~~~l~~~~~ 293 (357)
T 2fna_A 235 VYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK---------------------LILKEFENFLHGREIARKRYL 293 (357)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH---------------------HHHHHHHHHhhccccccHHHH
Confidence 999999999999999887653323333321 1111110 0111111 111 16888999
Q ss_pred HHHHHhcccCCCCCCChHHHHHHHH-Hhh---hcchHHHHHHHHHHCCCCcccCCCCcEE-eCHHHHHHH
Q 002972 430 RLFIALAALSWAEPVPEACLEAIWS-ILV---QKSLFSLAVCKLVEGSLLMKDDTDPLYQ-VHDMVSLYL 494 (862)
Q Consensus 430 ~cfl~lsiFp~~~~i~~~~L~~lW~-a~g---~~~~~e~~l~~L~~rsLl~~~~~~~~~~-mHdLVr~~a 494 (862)
..+..+|+ +. +...+..... ..| .......+++.|.+.+||...+ ..|+ .|+++++|+
T Consensus 294 ~~l~~la~---g~--~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~--~~y~f~~~~~~~~l 356 (357)
T 2fna_A 294 NIMRTLSK---CG--KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEG--EKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHTT---CB--CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESS--SCEEESSHHHHHHT
T ss_pred HHHHHHHc---CC--CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecC--CEEEecCHHHHHhh
Confidence 99999998 22 4444443321 122 2234678999999999998764 3577 589999875
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.49 E-value=6.9e-13 Score=149.74 Aligned_cols=293 Identities=13% Similarity=0.108 Sum_probs=166.9
Q ss_pred cCCCcCccHHHHHHHHH-hc---C--CCceEEEE--EcCCCCCHHHHHHHHHhCCCCC-----ccCceEEEeeeeeeecc
Q 002972 158 EQGYPISSKSKFLRKLL-EQ---E--ETHQVILI--VGLSGIGKSCLARQVASDPPER-----FVGGAVELGFGQWCSRA 224 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL-~~---~--~~~~vI~I--~G~gGiGKTtLA~~v~~~~~~~-----F~~~~~~~~~~~w~~~~ 224 (862)
...+||++..+.+...+ .. . .....+.| +|++|+||||||+.+++..... +...++|++..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 95 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAF------ 95 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGG------
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECC------
Confidence 56779999888888887 42 2 23456666 9999999999999999875432 22234443321
Q ss_pred cccCCCchHHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhc--CCCeEEEEEcCCCc--------hHHHHHh
Q 002972 225 ACNGSKSDYQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALY--GKSILILLDDVWEQ--------DIVERFA 294 (862)
Q Consensus 225 ~~~~s~~~~~~~l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LLVLDDV~~~--------~~~~~l~ 294 (862)
.......++..+...+ +. .......+...+...+.+.+. +++++|||||++.. +.+..+.
T Consensus 96 -----~~~~~~~~~~~l~~~l---~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~ 165 (412)
T 1w5s_A 96 -----NAPNLYTILSLIVRQT---GY--PIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLL 165 (412)
T ss_dssp -----GCCSHHHHHHHHHHHH---TC--CCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHh---CC--CCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHH
Confidence 1112334555554433 32 111112245566666776665 67899999999763 3344443
Q ss_pred hcc---C-----CCceEEEEccchhhhhhc-----------cc-ccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHH
Q 002972 295 KLY---D-----NDCKYLVTTRNEAVYEIT-----------EA-EKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAES 353 (862)
Q Consensus 295 ~~~---~-----~gsrILvTTR~~~va~~~-----------~~-~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~ 353 (862)
.++ + .+..+|+||+...+.... .. ..+ +|+.++.+++|...+..... ...-.++....
T Consensus 166 ~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~-~~~~~~~~~~~ 244 (412)
T 1w5s_A 166 RVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLR-DTVWEPRHLEL 244 (412)
T ss_dssp THHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBC-TTSCCHHHHHH
T ss_pred HHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCC-CCCCChHHHHH
Confidence 332 1 233588888866533211 11 122 89999999999776543211 11122467788
Q ss_pred HHhhhC------CchHHHHHHhhhh---h---c--cCCHHHHHHHHHHhhhhhccCCCCCCccchhhhhcccccccchhh
Q 002972 354 LLERCG------HHPLTVAVMGKAL---R---K--ELRSEKWEKAITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEF 419 (862)
Q Consensus 354 Iv~~cg------GLPLAI~~ig~~L---~---~--~~~~~~W~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~l 419 (862)
|++.|+ |.|..+..+.... . + ..+.+.+..++.... . ...+.-
T Consensus 245 i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~----------------------~-~~~~~~ 301 (412)
T 1w5s_A 245 ISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE----------------------A-ASIQTH 301 (412)
T ss_dssp HHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-----------------------------CC
T ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh----------------------c-cchHHH
Confidence 999999 9997655444321 1 1 112233333322211 0 123345
Q ss_pred hhccCcHHHHHHHHHhcccC--CCCCCChHHHHHHHH-----Hhhh----cchHHHHHHHHHHCCCCcccC----CCCcE
Q 002972 420 SLEAMPRDSRRLFIALAALS--WAEPVPEACLEAIWS-----ILVQ----KSLFSLAVCKLVEGSLLMKDD----TDPLY 484 (862)
Q Consensus 420 Sy~~L~~~~k~cfl~lsiFp--~~~~i~~~~L~~lW~-----a~g~----~~~~e~~l~~L~~rsLl~~~~----~~~~~ 484 (862)
++..||++.+.++..++.+. .+..++...+...+. ..|. ......+++.|.+.+||.... ...+|
T Consensus 302 ~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~ 381 (412)
T 1w5s_A 302 ELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRT 381 (412)
T ss_dssp SSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEECC-------C
T ss_pred HHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEeecccCCCCCce
Confidence 67889999999999998754 334455544443332 1121 133567899999999997752 22345
Q ss_pred EeCHHH
Q 002972 485 QVHDMV 490 (862)
Q Consensus 485 ~mHdLV 490 (862)
++|++.
T Consensus 382 ~~~~l~ 387 (412)
T 1w5s_A 382 TLFRLA 387 (412)
T ss_dssp CEEEEC
T ss_pred eEEEeC
Confidence 555443
No 8
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.19 E-value=1.1e-09 Score=122.21 Aligned_cols=279 Identities=12% Similarity=0.077 Sum_probs=164.1
Q ss_pred cCCCcCccHHHHHHHHHhc---CCCceEEEEEcCCCCCHHHHHHHHHhCCCC------Cc-cCceEEEeeeeeeeccccc
Q 002972 158 EQGYPISSKSKFLRKLLEQ---EETHQVILIVGLSGIGKSCLARQVASDPPE------RF-VGGAVELGFGQWCSRAACN 227 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~---~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~------~F-~~~~~~~~~~~w~~~~~~~ 227 (862)
...+|+++..+.+...+.. ....+.+.|+|++|+||||||+.+++.... .+ ...+++++...
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-------- 91 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE-------- 91 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH--------
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc--------
Confidence 5677999888888777654 334678999999999999999999986522 22 33344444311
Q ss_pred CCCch-HHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCch------H-HHHHhhccCC
Q 002972 228 GSKSD-YQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQD------I-VERFAKLYDN 299 (862)
Q Consensus 228 ~s~~~-~~~~l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~------~-~~~l~~~~~~ 299 (862)
.. ....+...+...+.... ......+.......+.+.+..++.+|||||++... . +..+.... .
T Consensus 92 ---~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~ 163 (384)
T 2qby_B 92 ---VGGTPQAVLSSLAGKLTGFS----VPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-A 163 (384)
T ss_dssp ---HCSCHHHHHHHHHHHHHCSC----CCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-S
T ss_pred ---CCCCHHHHHHHHHHHhcCCC----CCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-c
Confidence 11 22344444444332111 11122244566777888888877799999997643 2 33444433 6
Q ss_pred CceEEEEccchhhh--------hhccc-ccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhC---CchH-HH
Q 002972 300 DCKYLVTTRNEAVY--------EITEA-EKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCG---HHPL-TV 365 (862)
Q Consensus 300 gsrILvTTR~~~va--------~~~~~-~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cg---GLPL-AI 365 (862)
+..+|+||+..... ...+. ..+ +++.++..+++...+... .....-.++..+.+++.|+ |.|. |+
T Consensus 164 ~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~G~~r~a~ 242 (384)
T 2qby_B 164 NISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYG-LIKGTYDDEILSYIAAISAKEHGDARKAV 242 (384)
T ss_dssp CEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHT-SCTTSCCSHHHHHHHHHHHTTCCCHHHHH
T ss_pred ceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhh-cccCCcCHHHHHHHHHHHHhccCCHHHHH
Confidence 78899999876321 11111 112 789999999998876421 1111111255677888887 8876 44
Q ss_pred HHHhhhh--h---ccCCHHHHHHHHHHhhhhhccCCCCCCccchhhhhcccccccchhhhhccCcHHHHHHHHHhcccCC
Q 002972 366 AVMGKAL--R---KELRSEKWEKAITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDSRRLFIALAALSW 440 (862)
Q Consensus 366 ~~ig~~L--~---~~~~~~~W~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L~~~~k~cfl~lsiFp~ 440 (862)
..+-... . ...+.+.+..+++.... ..+..++..|+++.+..+..++....
T Consensus 243 ~~l~~a~~~a~~~~~i~~~~v~~~~~~~~~------------------------~~~~~~~~~l~~~~~~~l~al~~~~~ 298 (384)
T 2qby_B 243 NLLFRAAQLASGGGIIRKEHVDKAIVDYEQ------------------------ERLIEAVKALPFHYKLALRSLIESED 298 (384)
T ss_dssp HHHHHHHHHTTSSSCCCHHHHHHHHHHHHH------------------------HHHHHHHHSSCHHHHHHHHHHHTCCB
T ss_pred HHHHHHHHHhcCCCccCHHHHHHHHHHHhc------------------------chHHHHHHcCCHHHHHHHHHHHHhcc
Confidence 4333322 1 23456777776666421 12456778899988888877776111
Q ss_pred CCCCChHHHHHHHHHhhh----cchHHHHHHHHHHCCCCccc
Q 002972 441 AEPVPEACLEAIWSILVQ----KSLFSLAVCKLVEGSLLMKD 478 (862)
Q Consensus 441 ~~~i~~~~L~~lW~a~g~----~~~~e~~l~~L~~rsLl~~~ 478 (862)
+..+ ......+....|. ......++..|...+++...
T Consensus 299 ~~~~-~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 299 VMSA-HKMYTDLCNKFKQKPLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHH-HHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cChH-HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 0111 1122222222221 13455789999999999874
No 9
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.17 E-value=1.7e-09 Score=120.51 Aligned_cols=278 Identities=12% Similarity=0.095 Sum_probs=160.1
Q ss_pred cCCCcCccHHHHHHHHHhc---CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCc-----cCceEEEeeeeeeecccccCC
Q 002972 158 EQGYPISSKSKFLRKLLEQ---EETHQVILIVGLSGIGKSCLARQVASDPPERF-----VGGAVELGFGQWCSRAACNGS 229 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~---~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F-----~~~~~~~~~~~w~~~~~~~~s 229 (862)
...+|+++..+.+..++.. ....+.+.|+|++|+||||||+.+++.....+ ...+++++. .
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~-----------~ 87 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA-----------R 87 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET-----------T
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC-----------C
Confidence 5567899888888888754 23467899999999999999999998753211 222333332 1
Q ss_pred CchHHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhc--CCCeEEEEEcCCCch----H---HHHHhhcc---
Q 002972 230 KSDYQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALY--GKSILILLDDVWEQD----I---VERFAKLY--- 297 (862)
Q Consensus 230 ~~~~~~~l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LLVLDDV~~~~----~---~~~l~~~~--- 297 (862)
.......+...+...+ +. .......+..+....+.+.+. +++.+||||+++... . +..+..+.
T Consensus 88 ~~~~~~~~~~~l~~~l---~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~ 162 (387)
T 2v1u_A 88 HRETPYRVASAIAEAV---GV--RVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQEL 162 (387)
T ss_dssp TSCSHHHHHHHHHHHH---SC--CCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC
T ss_pred cCCCHHHHHHHHHHHh---CC--CCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhc
Confidence 1112334444444433 31 112222346666677777764 457899999998653 2 22233333
Q ss_pred --CCCceEEEEccchhhh--------hhcccccc---cCChhhHHHHHHHHhhh--cccccCcchHHHHHHHHhhhC---
Q 002972 298 --DNDCKYLVTTRNEAVY--------EITEAEKV---ELSKDDIMEISKSILLY--HSLLAEEELPAAAESLLERCG--- 359 (862)
Q Consensus 298 --~~gsrILvTTR~~~va--------~~~~~~~~---~L~~~ea~~Lf~~~~~~--~~~~~~~~l~~~~~~Iv~~cg--- 359 (862)
+.+..+|.||+..... ..+....+ +++.++..+++...+.. .....++ +..+.+++.++
T Consensus 163 ~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~ 239 (387)
T 2v1u_A 163 GDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREH 239 (387)
T ss_dssp -----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSS
T ss_pred CCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhc
Confidence 3355788888766322 12221122 78999999998877653 1111222 45567777887
Q ss_pred CchH-HHHHHhhhhh-------ccCCHHHHHHHHHHhhhhhccCCCCCCccchhhhhcccccccchhhhhccCcHHHHHH
Q 002972 360 HHPL-TVAVMGKALR-------KELRSEKWEKAITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDSRRL 431 (862)
Q Consensus 360 GLPL-AI~~ig~~L~-------~~~~~~~W~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L~~~~k~c 431 (862)
|.|- ++..+..... ...+.+.+..++..... ..+.-++..|+++.+..
T Consensus 240 G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~------------------------~~~~~~~~~l~~~~~~~ 295 (387)
T 2v1u_A 240 GDARRALDLLRVAGEIAERRREERVRREHVYSARAEIER------------------------DRVSEVVRTLPLHAKLV 295 (387)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH------------------------HHHHHHHHSSCHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh------------------------chHHHHHHcCCHHHHHH
Confidence 9993 3333332221 12356666666655421 12345678899999888
Q ss_pred HHHhcc-cCCCCCCChHHHHHHHHH----hhh----cchHHHHHHHHHHCCCCccc
Q 002972 432 FIALAA-LSWAEPVPEACLEAIWSI----LVQ----KSLFSLAVCKLVEGSLLMKD 478 (862)
Q Consensus 432 fl~lsi-Fp~~~~i~~~~L~~lW~a----~g~----~~~~e~~l~~L~~rsLl~~~ 478 (862)
+..++. +.....+....+.+.... .+. ...+..+++.|...+++...
T Consensus 296 l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 296 LLSIMMLEDGGRPASTGEIYERYKELTSTLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHHHSSSSCCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 877774 432233433433232222 121 13456789999999999874
No 10
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.10 E-value=2e-09 Score=119.72 Aligned_cols=280 Identities=14% Similarity=0.144 Sum_probs=159.0
Q ss_pred cCCCcCccHHHHHHHHHhc---CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCc--cCceEEEeeeeeeecccccCCCch
Q 002972 158 EQGYPISSKSKFLRKLLEQ---EETHQVILIVGLSGIGKSCLARQVASDPPERF--VGGAVELGFGQWCSRAACNGSKSD 232 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~---~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~~~~w~~~~~~~~s~~~ 232 (862)
...+|+++..+.+...+.. ......+.|+|++|+||||||+.+++.....+ ...+++++... ..
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~-----------~~ 88 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ-----------ID 88 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH-----------HC
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC-----------CC
Confidence 5677999988888888764 34467899999999999999999998664332 23344443311 11
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhcC--CCeEEEEEcCCCc------hHHHHHhhcc----CCC
Q 002972 233 YQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYG--KSILILLDDVWEQ------DIVERFAKLY----DND 300 (862)
Q Consensus 233 ~~~~l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~L~~--kr~LLVLDDV~~~------~~~~~l~~~~----~~g 300 (862)
....+...+.. .++.. ......+..+....+.+.+.. ++.+||||+++.. +.+..+.... ..+
T Consensus 89 ~~~~~~~~i~~---~l~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~ 163 (386)
T 2qby_A 89 TPYRVLADLLE---SLDVK--VPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSK 163 (386)
T ss_dssp SHHHHHHHHTT---TTSCC--CCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--
T ss_pred CHHHHHHHHHH---HhCCC--CCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCe
Confidence 12233333322 22211 111222455666666666653 4899999999653 3444554333 235
Q ss_pred ceEEEEccchhhhhhc--------ccccc---cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhC---CchHHH-
Q 002972 301 CKYLVTTRNEAVYEIT--------EAEKV---ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCG---HHPLTV- 365 (862)
Q Consensus 301 srILvTTR~~~va~~~--------~~~~~---~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cg---GLPLAI- 365 (862)
..+|+||+........ ....+ +++.++..+++...+.... ....-..+....+++.++ |.|..+
T Consensus 164 ~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~ 242 (386)
T 2qby_A 164 ISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF-KPGVLPDNVIKLCAALAAREHGDARRAL 242 (386)
T ss_dssp EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB-CSSCSCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred EEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 5778888766432211 11122 7999999999987654221 111222456677777777 998844
Q ss_pred HHHhhhhh-------ccCCHHHHHHHHHHhhhhhccCCCCCCccchhhhhcccccccchhhhhccCcHHHHHHHHHhccc
Q 002972 366 AVMGKALR-------KELRSEKWEKAITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDSRRLFIALAAL 438 (862)
Q Consensus 366 ~~ig~~L~-------~~~~~~~W~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L~~~~k~cfl~lsiF 438 (862)
..+..... ...+.+.+..++..... ..+.-++..+|+..+..+..++.+
T Consensus 243 ~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~------------------------~~~~~~~~~l~~~~~~il~ai~~~ 298 (386)
T 2qby_A 243 DLLRVSGEIAERMKDTKVKEEYVYMAKEEIER------------------------DRVRDIILTLPFHSKLVLMAVVSI 298 (386)
T ss_dssp HHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHH------------------------HHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCccCHHHHHHHHHHHhh------------------------chHHHHHHcCCHHHHHHHHHHHHH
Confidence 33322221 12345555555544321 124456778898888888777753
Q ss_pred CC-C-CCCChHHH----HHHHHHhhhc----chHHHHHHHHHHCCCCccc
Q 002972 439 SW-A-EPVPEACL----EAIWSILVQK----SLFSLAVCKLVEGSLLMKD 478 (862)
Q Consensus 439 p~-~-~~i~~~~L----~~lW~a~g~~----~~~e~~l~~L~~rsLl~~~ 478 (862)
.. + ..+....+ ..+-...|.. .....+++.|.+.++|...
T Consensus 299 ~~~g~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 299 SSEENVVSTTGAVYETYLNICKKLGVEAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp C-----CEEHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HhcCCCceeHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 22 2 22333322 1222222211 3456789999999999763
No 11
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.07 E-value=9.6e-09 Score=114.58 Aligned_cols=280 Identities=15% Similarity=0.110 Sum_probs=162.7
Q ss_pred cCCCcCccHHHHHHHHHhc---CCC--ceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCch
Q 002972 158 EQGYPISSKSKFLRKLLEQ---EET--HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSD 232 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~---~~~--~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~ 232 (862)
+..+|+++..+.+...+.. ... .+.+.|+|++|+||||||+.+++.........+++++. ....
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~-----------~~~~ 85 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYING-----------FIYR 85 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEET-----------TTCC
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeC-----------ccCC
Confidence 4577999888888777764 222 34899999999999999999998765432223333332 1112
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhc--CCCeEEEEEcCCCc--hHHHHHhhccC-------CCc
Q 002972 233 YQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALY--GKSILILLDDVWEQ--DIVERFAKLYD-------NDC 301 (862)
Q Consensus 233 ~~~~l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LLVLDDV~~~--~~~~~l~~~~~-------~gs 301 (862)
....+...+...+ +. .......+...+...+.+.+. +++.+||||+++.. .....+..++. .+.
T Consensus 86 ~~~~~~~~l~~~l---~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~ 160 (389)
T 1fnn_A 86 NFTAIIGEIARSL---NI--PFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRI 160 (389)
T ss_dssp SHHHHHHHHHHHT---TC--CCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCE
T ss_pred CHHHHHHHHHHHh---Cc--cCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCE
Confidence 2334444444332 31 111122255566666666664 56889999999764 44555554331 466
Q ss_pred eEEEEccchhhhhhc--------ccccc---cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhh---------CCc
Q 002972 302 KYLVTTRNEAVYEIT--------EAEKV---ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERC---------GHH 361 (862)
Q Consensus 302 rILvTTR~~~va~~~--------~~~~~---~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~c---------gGL 361 (862)
.||+||+...+.... ....+ |++.++..+++...+..... ...-.++....+++.+ +|.
T Consensus 161 ~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~G~ 239 (389)
T 1fnn_A 161 ALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA-EGSYSEDILQMIADITGAQTPLDTNRGD 239 (389)
T ss_dssp EEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC-TTSSCHHHHHHHHHHHSBSSTTCTTSCC
T ss_pred EEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHhhcccCCCCCCc
Confidence 888888776433221 11112 78899999998877653211 1111246778889999 788
Q ss_pred hHHHHHHhhh-hh-----c--cCCHHHHHHHHHHhhhhhccCCCCCCccchhhhhcccccccchhhhhccCcHHHHHHHH
Q 002972 362 PLTVAVMGKA-LR-----K--ELRSEKWEKAITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDSRRLFI 433 (862)
Q Consensus 362 PLAI~~ig~~-L~-----~--~~~~~~W~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L~~~~k~cfl 433 (862)
|-.+..+... .. + ..+.+....+..... ...+.-.+..|+++.+.++.
T Consensus 240 ~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~------------------------~~~~~~~l~~l~~~~~~~L~ 295 (389)
T 1fnn_A 240 ARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL------------------------FGISEEVLIGLPLHEKLFLL 295 (389)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS------------------------CCCCHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh------------------------hhhHHHHHHcCCHHHHHHHH
Confidence 7544333222 11 1 122233333322211 11234456789999998888
Q ss_pred HhcccC---CCCCCChHHHHHHHHHh----h----hcchHHHHHHHHHHCCCCccc
Q 002972 434 ALAALS---WAEPVPEACLEAIWSIL----V----QKSLFSLAVCKLVEGSLLMKD 478 (862)
Q Consensus 434 ~lsiFp---~~~~i~~~~L~~lW~a~----g----~~~~~e~~l~~L~~rsLl~~~ 478 (862)
.++.+. .+..++...+...+... + .......++.+|.+.++|...
T Consensus 296 ~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 296 AIVRSLKISHTPYITFGDAEESYKIVCEEYGERPRVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEe
Confidence 888654 22245555555544432 1 123455889999999999874
No 12
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.86 E-value=6.7e-08 Score=99.40 Aligned_cols=191 Identities=19% Similarity=0.169 Sum_probs=109.3
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHH
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l 237 (862)
...+|++...+.+...+......+.+.|+|++|+||||||+.+++.....+... ...|. .. ...
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~-----------~~~~~-~~-~~~--- 86 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-----------ATPCG-VC-DNC--- 86 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSC-----------SSCCS-CS-HHH---
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-----------CCCCc-cc-HHH---
Confidence 346788888888888887755556899999999999999999987653221100 00010 00 000
Q ss_pred HHHHHHHHHHhcccc--ccCCCC-CCHHHHHHHHHHH----hcCCCeEEEEEcCCC--chHHHHHhhcc---CCCceEEE
Q 002972 238 ARKISKFLVQIGFWK--KIKDEN-SDLEYLCCLLQEA----LYGKSILILLDDVWE--QDIVERFAKLY---DNDCKYLV 305 (862)
Q Consensus 238 ~~~i~~~l~~lg~~~--~~~~~~-~~~~~l~~~l~~~----L~~kr~LLVLDDV~~--~~~~~~l~~~~---~~gsrILv 305 (862)
..+. ...... ...... ...+.....+... ..+++.+||+||++. ...++.+...+ +.+..+|+
T Consensus 87 -~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~ 161 (250)
T 1njg_A 87 -REIE----QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLL 161 (250)
T ss_dssp -HHHH----TTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEE
T ss_pred -HHHh----ccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEE
Confidence 0000 000000 000000 1111121111111 134679999999965 45566665433 45678888
Q ss_pred Eccchhhhh-----hcccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHHHHhhhh
Q 002972 306 TTRNEAVYE-----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMGKAL 372 (862)
Q Consensus 306 TTR~~~va~-----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~~ig~~L 372 (862)
||+...... .+....+ +++.++..+++...+...+... .++....|++.|+|.|..+..+...+
T Consensus 162 ~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 162 ATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH---EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp EESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCB---CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 887653221 1111112 7899999999988775433221 23667889999999999888765443
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.77 E-value=2.1e-07 Score=94.48 Aligned_cols=177 Identities=15% Similarity=0.143 Sum_probs=104.0
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCC-CccCceEEEeeeeeeecccccCCCchHHHH
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPE-RFVGGAVELGFGQWCSRAACNGSKSDYQKR 236 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~ 236 (862)
...+|+++..+.+..++.... ...+.|+|++|+|||+||+.+++.... .+....+.++. +.......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~-~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~~~ 84 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN-IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA-----------SDERGIDV 84 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC-CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET-----------TCTTCHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC-CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc-----------ccccChHH
Confidence 345688888888888887653 334899999999999999999986532 22222222111 11111111
Q ss_pred HHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCc--hHHHHHhhc---cCCCceEEEEccchh
Q 002972 237 LARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQ--DIVERFAKL---YDNDCKYLVTTRNEA 311 (862)
Q Consensus 237 l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~--~~~~~l~~~---~~~gsrILvTTR~~~ 311 (862)
+...+..... ... ...+++.+||+||++.. ...+.+... .+.++++|+||+...
T Consensus 85 ~~~~~~~~~~-------~~~--------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 85 VRHKIKEFAR-------TAP--------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp HHHHHHHHHT-------SCC--------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred HHHHHHHHhc-------ccC--------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 1111111110 000 01256889999999765 334444432 356778888887653
Q ss_pred h-----hhhcccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHHHHhh
Q 002972 312 V-----YEITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMGK 370 (862)
Q Consensus 312 v-----a~~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~~ig~ 370 (862)
. ...+....+ +++.++..+++.+.+...+...+ ++....|++.++|.|..+..+..
T Consensus 144 ~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 144 RIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 2 112221222 78999999998887654332222 35677899999999986554433
No 14
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=98.74 E-value=2.4e-08 Score=91.71 Aligned_cols=80 Identities=9% Similarity=0.175 Sum_probs=65.8
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHhhhhHhhhcHHHHHHHHHHHHHHHHHhhHHH
Q 002972 8 SAATQIVTS-MVGAVHALEQASRNLDEAPKRIRSLEDFVCDLENLMRRIKQKHAYKLHNPQLDHQLKSLNSLIERLHPKI 86 (862)
Q Consensus 8 ~~~~~~vs~-l~~~~~~l~~~~~~l~~l~~~L~~l~~~L~~~~~~~~~~~~~~~~~~w~~qvr~~~yd~eD~ld~~~~~~ 86 (862)
.++...++. +.+.++.+.+..++++.++++|+.|++||.+++... ....+..++.|+.+||+++||+||++|+|.++.
T Consensus 4 ~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~-~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~ 82 (115)
T 3qfl_A 4 SNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVP-REQLDSQDKLWADEVRELSYVIEDVVDKFLVQV 82 (115)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-GGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444 445688899999999999999999999999998741 014678899999999999999999999999887
Q ss_pred HH
Q 002972 87 RK 88 (862)
Q Consensus 87 ~~ 88 (862)
..
T Consensus 83 ~~ 84 (115)
T 3qfl_A 83 DG 84 (115)
T ss_dssp HH
T ss_pred cc
Confidence 64
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.58 E-value=6.5e-07 Score=96.91 Aligned_cols=176 Identities=16% Similarity=0.216 Sum_probs=102.5
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCC-CccCceEEEeeeeeeecccccCCCchHHHH
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPE-RFVGGAVELGFGQWCSRAACNGSKSDYQKR 236 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~ 236 (862)
...+|++...+.+..++....... +.|+|++|+||||+|+.+++.... .+...+++++. +.......
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~-----------~~~~~~~~ 88 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA-----------SDDRGIDV 88 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT-----------TSCCSHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC-----------ccccChHH
Confidence 446688888888888887654334 899999999999999999987532 12222222221 11101111
Q ss_pred HHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHh-cCCCeEEEEEcCCCc--hHHHHHhhc---cCCCceEEEEccch
Q 002972 237 LARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEAL-YGKSILILLDDVWEQ--DIVERFAKL---YDNDCKYLVTTRNE 310 (862)
Q Consensus 237 l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LLVLDDV~~~--~~~~~l~~~---~~~gsrILvTTR~~ 310 (862)
+ +.+...+... .. .+ .+++.++|+||++.. ..++.+... .+.++++|+||...
T Consensus 89 i-~~~~~~~~~~------~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~ 147 (323)
T 1sxj_B 89 V-RNQIKHFAQK------KL--------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQS 147 (323)
T ss_dssp H-HTHHHHHHHB------CC--------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCG
T ss_pred H-HHHHHHHHhc------cc--------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCCh
Confidence 1 1111111000 00 01 356899999999864 334444332 34677888888664
Q ss_pred hh-----hhhcccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHH-HHHHh
Q 002972 311 AV-----YEITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLT-VAVMG 369 (862)
Q Consensus 311 ~v-----a~~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLA-I~~ig 369 (862)
.- ...+....+ +++.++..+++...+...+...+ ++....|++.|+|.|.. +..+.
T Consensus 148 ~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 148 NKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYT---NDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 31 112221222 78999999988877654332222 36678899999999954 44443
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.36 E-value=4.1e-06 Score=90.72 Aligned_cols=176 Identities=14% Similarity=0.135 Sum_probs=102.4
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCC-ccCceEEEeeeeeeecccccCCCchHHHH
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPER-FVGGAVELGFGQWCSRAACNGSKSDYQKR 236 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~w~~~~~~~~s~~~~~~~ 236 (862)
...+|.+...+.+..++..+.. ..+.|+|++|+||||+|+.+++..... +....+.++. +.......
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~-~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~-----------~~~~~~~~ 92 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSM-PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNA-----------SDERGINV 92 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCC-CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET-----------TCHHHHHT
T ss_pred HHhhCCHHHHHHHHHHHHcCCC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeec-----------cccCchHH
Confidence 3466888888888888876533 348999999999999999999865321 1111221111 11111111
Q ss_pred HHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCc--hHHHHHhhc---cCCCceEEEEccchh
Q 002972 237 LARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQ--DIVERFAKL---YDNDCKYLVTTRNEA 311 (862)
Q Consensus 237 l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~--~~~~~l~~~---~~~gsrILvTTR~~~ 311 (862)
+...+.... ... ....+++.++|+||++.. ...+.+... .+.++++|+||....
T Consensus 93 ~~~~~~~~~-~~~--------------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 93 IREKVKEFA-RTK--------------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSS 151 (327)
T ss_dssp THHHHHHHH-HSC--------------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred HHHHHHHHH-hhC--------------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCcc
Confidence 111111100 000 011256789999999865 445555433 356778888887653
Q ss_pred h-----hhhcccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHHHHh
Q 002972 312 V-----YEITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMG 369 (862)
Q Consensus 312 v-----a~~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~~ig 369 (862)
- ...+....+ +++.++...++...+...+... .++....|++.++|.|..+..+.
T Consensus 152 ~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~g~~r~~~~~l 212 (327)
T 1iqp_A 152 KIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL---TEEGLQAILYIAEGDMRRAINIL 212 (327)
T ss_dssp GSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEE---CHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHCCCCHHHHHHHH
Confidence 1 122222222 7899999888887765433222 23667889999999998655443
No 17
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.26 E-value=3.3e-05 Score=83.64 Aligned_cols=257 Identities=14% Similarity=0.121 Sum_probs=137.9
Q ss_pred cCCCcCccHHHHHHHHHhc----CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchH
Q 002972 158 EQGYPISSKSKFLRKLLEQ----EETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDY 233 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~----~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~ 233 (862)
...+|.+...+.+..++.. ......+.|+|++|+|||+||+.+++.....| ++++. . ... .
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~----~~~~~---------~-~~~-~ 76 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL----RVTSG---------P-AIE-K 76 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE----EEECT---------T-TCC-S
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE----EEEec---------c-ccC-C
Confidence 4566888777777776652 22346788999999999999999998654322 22211 1 110 0
Q ss_pred HHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCch--HHHHHhhccC-------------
Q 002972 234 QKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQD--IVERFAKLYD------------- 298 (862)
Q Consensus 234 ~~~l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~--~~~~l~~~~~------------- 298 (862)
...+... + ... ..+..+|+||++.... ..+.+...+.
T Consensus 77 ~~~l~~~----l-----------------------~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~ 128 (324)
T 1hqc_A 77 PGDLAAI----L-----------------------ANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPA 128 (324)
T ss_dssp HHHHHHH----H-----------------------TTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSS
T ss_pred hHHHHHH----H-----------------------HHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhcccccc
Confidence 1111111 1 000 1346789999997653 3333332111
Q ss_pred --------CCceEEEEccchh-h----hhhcc-cccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchH
Q 002972 299 --------NDCKYLVTTRNEA-V----YEITE-AEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPL 363 (862)
Q Consensus 299 --------~gsrILvTTR~~~-v----a~~~~-~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPL 363 (862)
++.++|.||.... + ...+. ...+ +++.++..+++...+...+... .++....+++.|+|.|-
T Consensus 129 ~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~r 205 (324)
T 1hqc_A 129 ARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRI---TEEAALEIGRRSRGTMR 205 (324)
T ss_dssp CCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCC---CHHHHHHHHHHSCSCHH
T ss_pred ccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHccCCHH
Confidence 2345666665432 1 11221 1122 6788888888877665433221 24677889999999998
Q ss_pred HHHHHhhhhhc--------cCCHHHHHHHHHHhhhhhccCCCCCCccchhhhhcccccccchhhhhccCcHHHHHHHHHh
Q 002972 364 TVAVMGKALRK--------ELRSEKWEKAITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDSRRLFIAL 435 (862)
Q Consensus 364 AI~~ig~~L~~--------~~~~~~W~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L~~~~k~cfl~l 435 (862)
.+..+...+.. ..+.+....++.. +..++..+++..+..+..+
T Consensus 206 ~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~-----------------------------~~~~~~~l~~~e~~~i~~~ 256 (324)
T 1hqc_A 206 VAKRLFRRVRDFAQVAGEEVITRERALEALAA-----------------------------LGLDELGLEKRDREILEVL 256 (324)
T ss_dssp HHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHH-----------------------------HTCCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-----------------------------hcccccCCCHHHHHHHHHH
Confidence 77655443321 1122223222222 1223456777777777766
Q ss_pred cccCCCCCCChHHHHHHHHHhhh-cchHHHHHHH-HHHCCCCcccCCCCcEEeCHHHHHHH
Q 002972 436 AALSWAEPVPEACLEAIWSILVQ-KSLFSLAVCK-LVEGSLLMKDDTDPLYQVHDMVSLYL 494 (862)
Q Consensus 436 siFp~~~~i~~~~L~~lW~a~g~-~~~~e~~l~~-L~~rsLl~~~~~~~~~~mHdLVr~~a 494 (862)
.....+.++....+.. ..|- .......+.. +++.+|+...+. ...+-+...+|+
T Consensus 257 ~~~~~g~~~~~~~~a~---~lgi~~~tl~~~l~~~~i~~~li~~~~~--g~~~~~~~~~~~ 312 (324)
T 1hqc_A 257 ILRFGGGPVGLATLAT---ALSEDPGTLEEVHEPYLIRQGLLKRTPR--GRVPTELAYRHL 312 (324)
T ss_dssp HHHSCSSCCCHHHHHH---HTTSCHHHHHHHTHHHHHHTTSEEEETT--EEEECHHHHHHT
T ss_pred HHHhcCCCchHHHHHH---HhCCCHHHHHHHHhHHHHHhcchhcCCc--cceecHHHHHHH
Confidence 5443444444444333 2332 2233444444 788898876543 345555555543
No 18
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.24 E-value=1.3e-05 Score=88.54 Aligned_cols=192 Identities=19% Similarity=0.136 Sum_probs=104.0
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHH
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l 237 (862)
...+|++...+.+...+........+.|+|++|+||||+|+.+++......... ...|. .-...
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-----------~~~~~--~~~~~--- 79 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-----------ATPCG--VCDNC--- 79 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-----------SSCCS--SSHHH---
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-----------CCCCc--ccHHH---
Confidence 346788888888888887654456889999999999999999988654221100 00011 00000
Q ss_pred HHHHHHHH-HH-hccccccCCCCCCHHHHHHHHHHH-hcCCCeEEEEEcCCCc--hHHHHHhhcc---CCCceEEEEccc
Q 002972 238 ARKISKFL-VQ-IGFWKKIKDENSDLEYLCCLLQEA-LYGKSILILLDDVWEQ--DIVERFAKLY---DNDCKYLVTTRN 309 (862)
Q Consensus 238 ~~~i~~~l-~~-lg~~~~~~~~~~~~~~l~~~l~~~-L~~kr~LLVLDDV~~~--~~~~~l~~~~---~~gsrILvTTR~ 309 (862)
..+.... .. ............+...+...+... ..+++.++|+||++.. ...+.+...+ +.+..+|++|..
T Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 158 (373)
T 1jr3_A 80 -REIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 158 (373)
T ss_dssp -HHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESC
T ss_pred -HHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCC
Confidence 0010000 00 000000001112333322221111 1346789999999754 4455555433 346677777654
Q ss_pred hh-hhh----hcccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHHHHh
Q 002972 310 EA-VYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMG 369 (862)
Q Consensus 310 ~~-va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~~ig 369 (862)
.. +.. .+....+ +++.++..+++...+...+... .++....|++.++|.|..+..+.
T Consensus 159 ~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~---~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 159 PQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH---EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred hHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHCCCCHHHHHHHH
Confidence 42 211 1111122 7899998888877765433221 23567789999999998776544
No 19
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.11 E-value=2e-05 Score=84.83 Aligned_cols=171 Identities=13% Similarity=0.162 Sum_probs=97.5
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC-CCccCceEEEeeeeeeecccccCCCchHHHH
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP-ERFVGGAVELGFGQWCSRAACNGSKSDYQKR 236 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~ 236 (862)
...+|.+...+.+...+....... +.++|++|+|||++|+.+++... ..+....+.++...- ........
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~ 87 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPH-LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE--------RGIDVVRH 87 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCC-EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTST--------TCTTTSSH
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCe-EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccc--------cChHHHHH
Confidence 346688888888887776643333 89999999999999999998642 222211222221000 00000000
Q ss_pred HHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHH--h-cCCCeEEEEEcCCCc--hHHHHHhhcc---CCCceEEEEcc
Q 002972 237 LARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEA--L-YGKSILILLDDVWEQ--DIVERFAKLY---DNDCKYLVTTR 308 (862)
Q Consensus 237 l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~--L-~~kr~LLVLDDV~~~--~~~~~l~~~~---~~gsrILvTTR 308 (862)
+.. .+... + .+++.++|+|+++.. ...+.+...+ +.++++|+||.
T Consensus 88 ~~~---------------------------~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~ 140 (319)
T 2chq_A 88 KIK---------------------------EFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCN 140 (319)
T ss_dssp HHH---------------------------HHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEES
T ss_pred HHH---------------------------HHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 111 11000 1 256789999999764 3445555444 35677887776
Q ss_pred chh-h----hhhcccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHHH
Q 002972 309 NEA-V----YEITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAV 367 (862)
Q Consensus 309 ~~~-v----a~~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~~ 367 (862)
... + ...+....+ +++.++..+++...+...+... .++....|++.++|.|..+..
T Consensus 141 ~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i---~~~~l~~l~~~~~G~~r~~~~ 202 (319)
T 2chq_A 141 YVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKI---TEDGLEALIYISGGDFRKAIN 202 (319)
T ss_dssp CGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCB---CHHHHHHHHHTTTTCHHHHHH
T ss_pred ChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 543 1 112221122 7888888888777665433221 235677888999998875543
No 20
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.02 E-value=0.00014 Score=79.36 Aligned_cols=243 Identities=15% Similarity=0.155 Sum_probs=129.7
Q ss_pred cCCCcCccHHHHHHHHHhc----CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchH
Q 002972 158 EQGYPISSKSKFLRKLLEQ----EETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDY 233 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~----~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~ 233 (862)
...+|.+...+.+..++.. ......|.|+|++|+|||+||+.+++.....|. .++. . ... .
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~----~~~~---------~-~~~-~ 93 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIK----TTAA---------P-MIE-K 93 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEE----EEEG---------G-GCC-S
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE----Eecc---------h-hcc-c
Confidence 4567888877777777654 234567899999999999999999987654431 1111 0 000 0
Q ss_pred HHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCc--hHHHHHhhccCC------------
Q 002972 234 QKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQ--DIVERFAKLYDN------------ 299 (862)
Q Consensus 234 ~~~l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~--~~~~~l~~~~~~------------ 299 (862)
...+.. .+.. ..+..+|+||++... .....+...+..
T Consensus 94 ~~~~~~---------------------------~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~ 144 (338)
T 3pfi_A 94 SGDLAA---------------------------ILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPA 144 (338)
T ss_dssp HHHHHH---------------------------HHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------
T ss_pred hhHHHH---------------------------HHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCcc
Confidence 111111 1110 235678999998765 233333322211
Q ss_pred ---------CceEEEEccchh-----hhhhcc-cccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchH
Q 002972 300 ---------DCKYLVTTRNEA-----VYEITE-AEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPL 363 (862)
Q Consensus 300 ---------gsrILvTTR~~~-----va~~~~-~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPL 363 (862)
+..+|.||.... +...++ ...+ +++.++...++...+...... -.++....|++.+.|.|-
T Consensus 145 ~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~---~~~~~~~~l~~~~~G~~r 221 (338)
T 3pfi_A 145 AQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT---CEEKAALEIAKRSRSTPR 221 (338)
T ss_dssp CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE---ECHHHHHHHHHTTTTCHH
T ss_pred ccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHCcCHH
Confidence 235555555432 112221 1122 678888888887766543321 124667788889999985
Q ss_pred HHHHHhhhhh------cc--CCHHHHHHHHHHhhhhhccCCCCCCccchhhhhcccccccchhhhhccCcHHHHHHHHHh
Q 002972 364 TVAVMGKALR------KE--LRSEKWEKAITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDSRRLFIAL 435 (862)
Q Consensus 364 AI~~ig~~L~------~~--~~~~~W~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L~~~~k~cfl~l 435 (862)
.+..+...+. .. .+.+....++.. +..+...++...+..+..+
T Consensus 222 ~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~-----------------------------~~~~~~~l~~~e~~~l~~l 272 (338)
T 3pfi_A 222 IALRLLKRVRDFADVNDEEIITEKRANEALNS-----------------------------LGVNELGFDAMDLRYLELL 272 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH-----------------------------HTCCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCccCHHHHHHHHHH-----------------------------hCCcccCCCHHHHHHHHHH
Confidence 5543332211 00 122222222222 2233345555556666666
Q ss_pred cccCCCCCCChHHHHHHHHHhh-hcchHHHHHH-HHHHCCCCcccCC
Q 002972 436 AALSWAEPVPEACLEAIWSILV-QKSLFSLAVC-KLVEGSLLMKDDT 480 (862)
Q Consensus 436 siFp~~~~i~~~~L~~lW~a~g-~~~~~e~~l~-~L~~rsLl~~~~~ 480 (862)
+-. .+..+....+ ..+.| ........++ .|++.++|.....
T Consensus 273 ~~~-~~~~~~~~~~---a~~lg~~~~tl~~~l~~~l~~~gli~~~~~ 315 (338)
T 3pfi_A 273 TAA-KQKPIGLASI---AAALSEDENTIEDVIEPYLLANGYIERTAK 315 (338)
T ss_dssp HHS-CSCCBCHHHH---HHHTTCCHHHHHHTTHHHHHHTTSEEEETT
T ss_pred HHh-cCCCchHHHH---HHHhCCCHHHHHHHHhHHHHHcCceecCCC
Confidence 555 4555554443 23333 2234455566 7889999977654
No 21
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.98 E-value=2.6e-05 Score=84.35 Aligned_cols=162 Identities=11% Similarity=0.050 Sum_probs=84.9
Q ss_pred CcCccHHHHHHHHHhc---CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCc------cCceEEEeeeeeeecccccCCCc
Q 002972 161 YPISSKSKFLRKLLEQ---EETHQVILIVGLSGIGKSCLARQVASDPPERF------VGGAVELGFGQWCSRAACNGSKS 231 (862)
Q Consensus 161 ~g~~~~~~~l~~LL~~---~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~w~~~~~~~~s~~ 231 (862)
.+|+++.+.+...+.. .+....+.|+|++|+|||++++.+++...... ....++++ |. ..
T Consensus 23 ~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN---------c~--~~ 91 (318)
T 3te6_A 23 KSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID---------AL--EL 91 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE---------TT--CC
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe---------cc--cc
Confidence 3677777777665543 34567889999999999999999998764211 11122222 11 11
Q ss_pred hHHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHH--hcCCCeEEEEEcCCCch---HHHHHhhcc-CCCc--eE
Q 002972 232 DYQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEA--LYGKSILILLDDVWEQD---IVERFAKLY-DNDC--KY 303 (862)
Q Consensus 232 ~~~~~l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~--L~~kr~LLVLDDV~~~~---~~~~l~~~~-~~gs--rI 303 (862)
.....++..|.+.+. |. ........+.+...+... -.+++++++||+++... .+..+..|. ..++ .|
T Consensus 92 ~t~~~~~~~I~~~L~--g~---~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~v 166 (318)
T 3te6_A 92 AGMDALYEKIWFAIS--KE---NLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSI 166 (318)
T ss_dssp C--HHHHHHHHHHHS--CC---C--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEE
T ss_pred CCHHHHHHHHHHHhc--CC---CCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEE
Confidence 222334444444332 10 111112333333333322 24567999999998653 333333322 2333 33
Q ss_pred EEEccchhhh---------hhcccccc---cCChhhHHHHHHHHhhh
Q 002972 304 LVTTRNEAVY---------EITEAEKV---ELSKDDIMEISKSILLY 338 (862)
Q Consensus 304 LvTTR~~~va---------~~~~~~~~---~L~~~ea~~Lf~~~~~~ 338 (862)
|.++-..+.. ..++...+ |++.++-.+++..++..
T Consensus 167 I~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 167 ICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp EEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred EEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 4444333221 12222222 78899988888777654
No 22
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.95 E-value=9.4e-05 Score=84.06 Aligned_cols=162 Identities=13% Similarity=0.134 Sum_probs=89.8
Q ss_pred HHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccC-ceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHh
Q 002972 170 LRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVG-GAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQI 248 (862)
Q Consensus 170 l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~-~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~l 248 (862)
+..+.........+.|+|++|+||||||+.+++.....+++ .+++++. .....++...+ ..
T Consensus 120 ~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~-------------~~~~~~~~~~~----~~- 181 (440)
T 2z4s_A 120 ALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS-------------EKFLNDLVDSM----KE- 181 (440)
T ss_dssp HHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH-------------HHHHHHHHHHH----HT-
T ss_pred HHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH-------------HHHHHHHHHHH----Hc-
Confidence 33444433226688999999999999999999876433322 2232221 12222222222 10
Q ss_pred ccccccCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCch----HHHHHhhc----cCCCceEEEEccchh---------
Q 002972 249 GFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQD----IVERFAKL----YDNDCKYLVTTRNEA--------- 311 (862)
Q Consensus 249 g~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~----~~~~l~~~----~~~gsrILvTTR~~~--------- 311 (862)
. .. ..+...+..+.-+|+|||++... ..+.+... ...|..||+||.+..
T Consensus 182 ------~----~~----~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~ 247 (440)
T 2z4s_A 182 ------G----KL----NEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_dssp ------T----CH----HHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHH
T ss_pred ------c----cH----HHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHH
Confidence 0 11 12333444467899999996432 22333322 356788999887632
Q ss_pred hhhhcc---cccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHH
Q 002972 312 VYEITE---AEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVA 366 (862)
Q Consensus 312 va~~~~---~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~ 366 (862)
+...+. ...+ +++.++-.+++.+.+...+...++ +....|++.++|.+-.+.
T Consensus 248 L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 248 LVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHH
T ss_pred HHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHH
Confidence 112121 1122 678888888887766543332222 446678888888775443
No 23
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.90 E-value=0.00021 Score=75.89 Aligned_cols=50 Identities=28% Similarity=0.387 Sum_probs=38.3
Q ss_pred cCCCcCccHHHHHHHHHhcC------------CCceEEEEEcCCCCCHHHHHHHHHhCCCCC
Q 002972 158 EQGYPISSKSKFLRKLLEQE------------ETHQVILIVGLSGIGKSCLARQVASDPPER 207 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~------------~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~ 207 (862)
...+|.++..+.+...+... ...+-+.|+|++|+|||+||+.+++.....
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~ 78 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT 78 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 45668888888777765431 235678999999999999999999876543
No 24
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.82 E-value=0.00024 Score=76.95 Aligned_cols=48 Identities=15% Similarity=0.243 Sum_probs=39.9
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
...+|.++..+.+..++.......++.+.|++|+|||++|+.+++...
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN 73 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 456688888888888888765567888899999999999999998764
No 25
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.82 E-value=3.5e-05 Score=79.11 Aligned_cols=157 Identities=16% Similarity=0.123 Sum_probs=87.0
Q ss_pred cHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHH
Q 002972 165 SKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKF 244 (862)
Q Consensus 165 ~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~ 244 (862)
...+.+..+.... ..+.+.|+|++|+||||||+.+++...... ..+++++..... . . +..
T Consensus 38 ~~~~~l~~~~~~~-~~~~~ll~G~~G~GKT~la~~l~~~~~~~~-~~~~~~~~~~~~----------~---~----~~~- 97 (242)
T 3bos_A 38 ELIGALKSAASGD-GVQAIYLWGPVKSGRTHLIHAACARANELE-RRSFYIPLGIHA----------S---I----STA- 97 (242)
T ss_dssp HHHHHHHHHHHTC-SCSEEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEEEGGGGG----------G---S----CGG-
T ss_pred HHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEEEHHHHH----------H---H----HHH-
Confidence 3445555555543 456889999999999999999987654221 123333321110 0 0 000
Q ss_pred HHHhccccccCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCch--H--HHHHhhc----cCCCc-eEEEEccchh----
Q 002972 245 LVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQD--I--VERFAKL----YDNDC-KYLVTTRNEA---- 311 (862)
Q Consensus 245 l~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~--~--~~~l~~~----~~~gs-rILvTTR~~~---- 311 (862)
. + +.+ .++.+||+||++... . .+.+... ...+. ++|+||+...
T Consensus 98 ---------~-------------~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~ 153 (242)
T 3bos_A 98 ---------L-------------L-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAG 153 (242)
T ss_dssp ---------G-------------G-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTT
T ss_pred ---------H-------------H-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHH
Confidence 0 0 001 345799999997542 1 3333322 22343 4787776432
Q ss_pred -----hhhhc---ccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHHHH
Q 002972 312 -----VYEIT---EAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVM 368 (862)
Q Consensus 312 -----va~~~---~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~~i 368 (862)
+...+ ....+ +++.++..+++...+...+... .++....|++.++|.+-.+..+
T Consensus 154 ~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 154 FVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQL---PEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp CCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCC---CHHHHHHHHHHTTTCHHHHHHH
T ss_pred HhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHccCCHHHHHHH
Confidence 11111 11122 7888999888887765433221 2466778888899887665543
No 26
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.80 E-value=0.00043 Score=75.80 Aligned_cols=94 Identities=7% Similarity=0.125 Sum_probs=55.1
Q ss_pred cCCCeEEEEEcCCCc--hHHHHHhhc---cCCCceEEEEccchh-hh----hhcccccc-cCChhhHHHHHHHHhhhccc
Q 002972 273 YGKSILILLDDVWEQ--DIVERFAKL---YDNDCKYLVTTRNEA-VY----EITEAEKV-ELSKDDIMEISKSILLYHSL 341 (862)
Q Consensus 273 ~~kr~LLVLDDV~~~--~~~~~l~~~---~~~gsrILvTTR~~~-va----~~~~~~~~-~L~~~ea~~Lf~~~~~~~~~ 341 (862)
.+++-++|||++... ...+.+... .+.++++|++|.+.. +. ..+....+ +++.++..+.+...+...+.
T Consensus 132 ~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (354)
T 1sxj_E 132 AHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI 211 (354)
T ss_dssp --CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC
Confidence 346779999999864 223333332 345778887776642 21 12211122 78888888888777654433
Q ss_pred ccCcchHHHHHHHHhhhCCchHHHHHH
Q 002972 342 LAEEELPAAAESLLERCGHHPLTVAVM 368 (862)
Q Consensus 342 ~~~~~l~~~~~~Iv~~cgGLPLAI~~i 368 (862)
..+. ++....|++.++|.+-.+..+
T Consensus 212 ~~~~--~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 212 QLET--KDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp EECC--SHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCc--HHHHHHHHHHcCCCHHHHHHH
Confidence 2220 256678888888887655443
No 27
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.77 E-value=0.00019 Score=81.61 Aligned_cols=169 Identities=15% Similarity=0.148 Sum_probs=92.8
Q ss_pred cCCCcCccHH---HHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHH
Q 002972 158 EQGYPISSKS---KFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQ 234 (862)
Q Consensus 158 ~~~~g~~~~~---~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~ 234 (862)
...+|.+... +.+...+... ....+.|+|++|+||||||+.+++.....|. .++. ........
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~-~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~----~l~a---------~~~~~~~i 91 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG-HLHSMILWGPPGTGKTTLAEVIARYANADVE----RISA---------VTSGVKEI 91 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT-CCCEEEEECSTTSSHHHHHHHHHHHTTCEEE----EEET---------TTCCHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcC-CCcEEEEECCCCCcHHHHHHHHHHHhCCCeE----EEEe---------ccCCHHHH
Confidence 3456766555 5666666654 3467899999999999999999987754432 1111 10111111
Q ss_pred HHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCc--hHHHHHhhccCCCc-eEE-EEccch
Q 002972 235 KRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQ--DIVERFAKLYDNDC-KYL-VTTRNE 310 (862)
Q Consensus 235 ~~l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~--~~~~~l~~~~~~gs-rIL-vTTR~~ 310 (862)
..+.... ......+++.+|+||++... ...+.|.+.+..+. .+| .||.+.
T Consensus 92 r~~~~~a--------------------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~v~lI~att~n~ 145 (447)
T 3pvs_A 92 REAIERA--------------------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENP 145 (447)
T ss_dssp HHHHHHH--------------------------HHHHHTTCCEEEEEETTTCC------CCHHHHHTTSCEEEEEESSCG
T ss_pred HHHHHHH--------------------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCceEEEecCCCCc
Confidence 1111111 00112467889999999765 34455555454454 333 355554
Q ss_pred h------hhhhcccccc-cCChhhHHHHHHHHhhhccc----ccCcchHHHHHHHHhhhCCchHHHH
Q 002972 311 A------VYEITEAEKV-ELSKDDIMEISKSILLYHSL----LAEEELPAAAESLLERCGHHPLTVA 366 (862)
Q Consensus 311 ~------va~~~~~~~~-~L~~~ea~~Lf~~~~~~~~~----~~~~~l~~~~~~Iv~~cgGLPLAI~ 366 (862)
. +...+....+ +++.++...++...+..... ....-.++....|++.++|.+-.+.
T Consensus 146 ~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 146 SFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp GGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred ccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 2 1112222222 78888888888777654111 0111124567788888888776444
No 28
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.75 E-value=0.00028 Score=77.08 Aligned_cols=184 Identities=13% Similarity=0.114 Sum_probs=97.7
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCC--CccCceEEEeeeeeeecccccCCCchHHH
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPE--RFVGGAVELGFGQWCSRAACNGSKSDYQK 235 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~~~~~w~~~~~~~~s~~~~~~ 235 (862)
...+|.++..+.+...+....... +.|+|++|+||||+|+.+++.... .+...++.++. +......
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~-----------~~~~~~~ 104 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPH-MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA-----------SDERGIS 104 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCC-EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS-----------SSCCCHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCE-EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc-----------ccccchH
Confidence 456688888888888887653233 889999999999999999886431 12222222221 1100111
Q ss_pred HHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCc--hHHHHHhhcc---CCCceEEEEccch
Q 002972 236 RLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQ--DIVERFAKLY---DNDCKYLVTTRNE 310 (862)
Q Consensus 236 ~l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~--~~~~~l~~~~---~~gsrILvTTR~~ 310 (862)
.+ +.....+.... ....... .....-.+++-+|++|+++.. ...+.+...+ ...+++|++|...
T Consensus 105 ~~-~~~~~~~~~~~-----~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~ 173 (353)
T 1sxj_D 105 IV-REKVKNFARLT-----VSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYV 173 (353)
T ss_dssp HH-TTHHHHHHHSC-----CCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred HH-HHHHHHHhhhc-----ccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCch
Confidence 11 11111111100 0000000 000111235579999998754 3344444332 4456777776543
Q ss_pred h-hh----hhcccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHHH
Q 002972 311 A-VY----EITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAV 367 (862)
Q Consensus 311 ~-va----~~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~~ 367 (862)
. +. ..+....+ +++.++....+...+...+...+ ++....|++.++|.|-.+..
T Consensus 174 ~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 174 TRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCD---DGVLERILDISAGDLRRGIT 233 (353)
T ss_dssp GGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHTSSCHHHHHH
T ss_pred hhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 2 21 12221122 78888888877776644332222 46778899999999876443
No 29
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.74 E-value=0.00051 Score=71.68 Aligned_cols=49 Identities=20% Similarity=0.317 Sum_probs=34.9
Q ss_pred cCCCcCccHHHHHHHHHhc---C--------CCceEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 158 EQGYPISSKSKFLRKLLEQ---E--------ETHQVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~---~--------~~~~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
...+|.++..+.+..++.. . ...+-+.|+|++|+|||++|+.+++....
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~ 65 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV 65 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4556777766666655431 1 22456889999999999999999986543
No 30
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.73 E-value=8.4e-05 Score=86.28 Aligned_cols=185 Identities=14% Similarity=0.130 Sum_probs=96.5
Q ss_pred cCCCcCccHHHHHHHHHhcC----------------CCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeee
Q 002972 158 EQGYPISSKSKFLRKLLEQE----------------ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWC 221 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~----------------~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~ 221 (862)
...+|.+...+.+..++... +..+.+.|+|++|+||||+|+.+++... ..++.++...
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~~~i~in~s~-- 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----YDILEQNASD-- 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----CEEEEECTTS--
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----CCEEEEeCCC--
Confidence 45668888888888877641 1246899999999999999999998763 1222222110
Q ss_pred ecccccCCCchHHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCc-----hHHHHHhhc
Q 002972 222 SRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQ-----DIVERFAKL 296 (862)
Q Consensus 222 ~~~~~~~s~~~~~~~l~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~-----~~~~~l~~~ 296 (862)
.... .+.... +.................. .....+++.+||||+++.. ..+..+...
T Consensus 113 -------~~~~---~~~~~~---i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~ 174 (516)
T 1sxj_A 113 -------VRSK---TLLNAG---VKNALDNMSVVGYFKHNEE-----AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQF 174 (516)
T ss_dssp -------CCCH---HHHHHT---GGGGTTBCCSTTTTTC---------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHH
T ss_pred -------cchH---HHHHHH---HHHHhccccHHHHHhhhhh-----hhhccCCCeEEEEECCCccchhhHHHHHHHHHH
Confidence 1111 111111 1100000000000000000 0012356789999999754 223444433
Q ss_pred c-CCCceEEEEccchh---hhhhcc---cccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCC-chHHHHH
Q 002972 297 Y-DNDCKYLVTTRNEA---VYEITE---AEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGH-HPLTVAV 367 (862)
Q Consensus 297 ~-~~gsrILvTTR~~~---va~~~~---~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgG-LPLAI~~ 367 (862)
. ..+..||+++.+.. +..... ...+ +++.++..+.+...+...+...++ +....|++.++| ++-++..
T Consensus 175 l~~~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~ 251 (516)
T 1sxj_A 175 CRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINL 251 (516)
T ss_dssp HHHCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHH
T ss_pred HHhcCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHH
Confidence 3 23445666655432 211111 1112 678888888887776554433332 456788999998 4555555
Q ss_pred Hh
Q 002972 368 MG 369 (862)
Q Consensus 368 ig 369 (862)
+.
T Consensus 252 L~ 253 (516)
T 1sxj_A 252 LS 253 (516)
T ss_dssp HT
T ss_pred HH
Confidence 54
No 31
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.70 E-value=8.8e-05 Score=72.85 Aligned_cols=46 Identities=15% Similarity=0.273 Sum_probs=36.9
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
...+|+++..+.+...+... ..+.+.|+|++|+|||+||+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR-TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS-SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC-CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35668888888888777663 34567899999999999999998865
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.61 E-value=0.00046 Score=74.04 Aligned_cols=45 Identities=18% Similarity=0.153 Sum_probs=31.9
Q ss_pred CCcCccHHHHHHHHHhc--------------CCCceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 160 GYPISSKSKFLRKLLEQ--------------EETHQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 160 ~~g~~~~~~~l~~LL~~--------------~~~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.+|.++..+.+..++.. ......+.|+|++|+|||+||+.+++..
T Consensus 33 i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 33 LIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45666666655554331 2335578999999999999999888765
No 33
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.59 E-value=0.002 Score=69.86 Aligned_cols=47 Identities=26% Similarity=0.358 Sum_probs=35.6
Q ss_pred cCCCcCccHHHHHHHHHhc-----------CCCceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 158 EQGYPISSKSKFLRKLLEQ-----------EETHQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~-----------~~~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
....|.++..+.+.+.+.. ....+-|.++|++|+|||+||+.+++..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 4566888777777665521 1224689999999999999999999876
No 34
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.56 E-value=0.0012 Score=72.61 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=37.2
Q ss_pred cCCCcCccHHHHHHHHHhc-----------CCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 158 EQGYPISSKSKFLRKLLEQ-----------EETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~-----------~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
...+|.++..+.+...+.. ....+.|.|+|++|+|||+||+.+++...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 4567888877777776542 12356899999999999999999998764
No 35
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.55 E-value=0.0021 Score=68.46 Aligned_cols=48 Identities=23% Similarity=0.280 Sum_probs=36.8
Q ss_pred cCCCcCccHHHHHHHHHhc-----------CCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 158 EQGYPISSKSKFLRKLLEQ-----------EETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~-----------~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
...+|.++..+.+..++.. ....+.+.|+|++|+||||+|+.+++...
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 4566888877777776532 11256889999999999999999998764
No 36
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.47 E-value=0.0012 Score=71.39 Aligned_cols=157 Identities=18% Similarity=0.216 Sum_probs=81.2
Q ss_pred HHHHHHHhcCC-CceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHH
Q 002972 168 KFLRKLLEQEE-THQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLV 246 (862)
Q Consensus 168 ~~l~~LL~~~~-~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~ 246 (862)
..+..+..... ....+.|+|++|+||||||+.+++..... ...+++++. ......+...+..
T Consensus 24 ~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~~~~~i~~-------------~~~~~~~~~~~~~--- 86 (324)
T 1l8q_A 24 EVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GYRVIYSSA-------------DDFAQAMVEHLKK--- 86 (324)
T ss_dssp HHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-TCCEEEEEH-------------HHHHHHHHHHHHH---
T ss_pred HHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEH-------------HHHHHHHHHHHHc---
Confidence 33455554433 35678999999999999999999865321 122333321 1122222222210
Q ss_pred HhccccccCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCch----HHHHHhh----ccCCCceEEEEccchhh------
Q 002972 247 QIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQD----IVERFAK----LYDNDCKYLVTTRNEAV------ 312 (862)
Q Consensus 247 ~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~----~~~~l~~----~~~~gsrILvTTR~~~v------ 312 (862)
..... +...+. +..+|+|||+.... ..+.+.. ....|..||+||....-
T Consensus 87 ------------~~~~~----~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~ 149 (324)
T 1l8q_A 87 ------------GTINE----FRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVS 149 (324)
T ss_dssp ------------TCHHH----HHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSC
T ss_pred ------------CcHHH----HHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhh
Confidence 01111 222222 36799999996543 2233332 23467788888764321
Q ss_pred ---hhhccc---ccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchH
Q 002972 313 ---YEITEA---EKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPL 363 (862)
Q Consensus 313 ---a~~~~~---~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPL 363 (862)
...+.. ..+ + +.++-.+++...+...+...+ ++....|++.+ |.+-
T Consensus 150 ~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~---~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 150 DRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELR---KEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHC-SSHH
T ss_pred hHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHhC-CCHH
Confidence 111111 111 5 777777777766643332222 35566677777 6543
No 37
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.45 E-value=0.0012 Score=71.71 Aligned_cols=49 Identities=27% Similarity=0.361 Sum_probs=36.9
Q ss_pred cCCCcCccHHHHHHHHHh----------c-CCCceEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 158 EQGYPISSKSKFLRKLLE----------Q-EETHQVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~----------~-~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
...+|.++..+.+..++. . ....+-|.++|++|+|||+||+.+++....
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~ 77 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS 77 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTC
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCC
Confidence 456688887777777662 1 112467999999999999999999987543
No 38
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.45 E-value=0.0016 Score=71.53 Aligned_cols=48 Identities=17% Similarity=0.211 Sum_probs=34.1
Q ss_pred CCCcCccHHHHHHHH---HhcCC-CceEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 159 QGYPISSKSKFLRKL---LEQEE-THQVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 159 ~~~g~~~~~~~l~~L---L~~~~-~~~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
..+|.+...+.+..+ +.... ..+.+.|+|++|+|||+||+.+++....
T Consensus 45 ~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 45 GMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred hccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 455777665554433 33332 2468999999999999999999987653
No 39
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.42 E-value=0.0013 Score=70.61 Aligned_cols=48 Identities=23% Similarity=0.316 Sum_probs=36.7
Q ss_pred cCCCcCccHHHHHHHHHhc------------CCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 158 EQGYPISSKSKFLRKLLEQ------------EETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~------------~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
...+|.++..+.+..++.. -...+.|.|+|++|+|||+||+.+++...
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 4566888777777766542 12356799999999999999999998764
No 40
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.39 E-value=0.00021 Score=69.99 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=36.3
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
...+|++...+.+...+... ..+.+.|+|++|+|||+||+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~-~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR-TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS-SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC-CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35668888777777777653 34567899999999999999998765
No 41
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.38 E-value=0.0024 Score=70.22 Aligned_cols=48 Identities=27% Similarity=0.363 Sum_probs=36.1
Q ss_pred cCCCcCccHHHHHHHHHhc-----------CCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 158 EQGYPISSKSKFLRKLLEQ-----------EETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~-----------~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
...+|.++..+.+...+.. ....+-|.|+|++|+|||+||+.+++...
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 4566888887777776521 11245688999999999999999998764
No 42
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.36 E-value=0.003 Score=68.77 Aligned_cols=178 Identities=11% Similarity=0.111 Sum_probs=92.1
Q ss_pred cHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHH
Q 002972 165 SKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKF 244 (862)
Q Consensus 165 ~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~ 244 (862)
+..+.+...+..+.-.+.+.++|+.|+|||++|+.+++......... ...|... .. .+.+..
T Consensus 9 ~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-----------~~~c~~c--~~----c~~~~~- 70 (334)
T 1a5t_A 9 PDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQG-----------HKSCGHC--RG----CQLMQA- 70 (334)
T ss_dssp HHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-----------TBCCSCS--HH----HHHHHH-
T ss_pred HHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-----------CCCCCCC--HH----HHHHhc-
Confidence 44455566665554467899999999999999999998654221100 0001100 00 001100
Q ss_pred HHHhccccccC---CCCCCHHHHHHHHHHHh-----cCCCeEEEEEcCCCc--hHHHHHhhcc---CCCceEEEEccchh
Q 002972 245 LVQIGFWKKIK---DENSDLEYLCCLLQEAL-----YGKSILILLDDVWEQ--DIVERFAKLY---DNDCKYLVTTRNEA 311 (862)
Q Consensus 245 l~~lg~~~~~~---~~~~~~~~l~~~l~~~L-----~~kr~LLVLDDV~~~--~~~~~l~~~~---~~gsrILvTTR~~~ 311 (862)
........-.. ......++... +.+.+ .+++-++|+|+++.. +..+.+...+ ++++.+|++|.+.+
T Consensus 71 ~~~~d~~~~~~~~~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 71 GTHPDYYTLAPEKGKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp TCCTTEEEECCCTTCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CCCCCEEEEeccccCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 00000000000 01123333332 22332 256789999999865 3445555433 34567666665542
Q ss_pred -hhh----hcccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHHHHh
Q 002972 312 -VYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMG 369 (862)
Q Consensus 312 -va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~~ig 369 (862)
+.. .+....+ +++.++..+.+.+.. .-.++.+..+++.++|.|..+..+.
T Consensus 150 ~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~--------~~~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 150 RLLATLRSRCRLHYLAPPPEQYAVTWLSREV--------TMSQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHC--------CCCHHHHHHHHHHTTTCHHHHHHTT
T ss_pred hCcHHHhhcceeeeCCCCCHHHHHHHHHHhc--------CCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 222 2221122 688888777766553 1113556789999999998665543
No 43
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.33 E-value=0.003 Score=71.73 Aligned_cols=47 Identities=26% Similarity=0.358 Sum_probs=35.9
Q ss_pred cCCCcCccHHHHHHHHHhc-----------CCCceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 158 EQGYPISSKSKFLRKLLEQ-----------EETHQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~-----------~~~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
...+|.++..+.+...+.. ....+-|.|+|++|+|||+||+.+++..
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 4566888777777766521 1235689999999999999999999876
No 44
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.32 E-value=0.0019 Score=70.48 Aligned_cols=170 Identities=16% Similarity=0.208 Sum_probs=87.0
Q ss_pred CCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCC-CccCceEEEeeeeeeecccccCCCchHHHHH
Q 002972 159 QGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPE-RFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (862)
Q Consensus 159 ~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l 237 (862)
..+|.+.-.+.+...+..+ ....+.++|++|+||||+|+.+++.... .+...++.++. +.......+
T Consensus 26 ~~~g~~~~~~~L~~~i~~g-~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~-----------~~~~~~~~i 93 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEG-KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA-----------SDDRGIDVV 93 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTT-CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT-----------TSCCSHHHH
T ss_pred HhcCcHHHHHHHHHHHhcC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC-----------cccccHHHH
Confidence 3456666677777777664 3223899999999999999999986432 12111211111 110001111
Q ss_pred HHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCc--hHHHHHhhc---cCCCceEEEEccchh-
Q 002972 238 ARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQ--DIVERFAKL---YDNDCKYLVTTRNEA- 311 (862)
Q Consensus 238 ~~~i~~~l~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~--~~~~~l~~~---~~~gsrILvTTR~~~- 311 (862)
...+ ..+.+.. . .+.+.+-++|+|++... ...+.+... .+..+++|++|....
T Consensus 94 r~~i-~~~~~~~-----~---------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~ 152 (340)
T 1sxj_C 94 RNQI-KDFASTR-----Q---------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHK 152 (340)
T ss_dssp HTHH-HHHHHBC-----C---------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred HHHH-HHHHhhc-----c---------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccc
Confidence 1111 1110000 0 01234678999998654 334444432 345667777665432
Q ss_pred h----hhhcccccc-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHH
Q 002972 312 V----YEITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLT 364 (862)
Q Consensus 312 v----a~~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLA 364 (862)
+ ...+..... +++.++..+.+...+.......+ ++..+.|++.++|.+--
T Consensus 153 i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~---~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 153 LTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLS---PNAEKALIELSNGDMRR 207 (340)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBC---HHHHHHHHHHHTTCHHH
T ss_pred cchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHH
Confidence 1 111211122 67777777766665532222111 34566777777777653
No 45
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.29 E-value=0.0022 Score=67.57 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 178 ETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 178 ~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
...+.+.|+|++|+|||+||+.+++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3467899999999999999999998743
No 46
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.25 E-value=0.0059 Score=67.92 Aligned_cols=49 Identities=20% Similarity=0.289 Sum_probs=37.1
Q ss_pred cCCCcCccHHHHHHHHHhc-----------CCCceEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 158 EQGYPISSKSKFLRKLLEQ-----------EETHQVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~-----------~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
...+|.+...+.+..++.. ....+-|.|+|.+|+|||+||+.+++....
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~ 174 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA 174 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC
Confidence 4567888877777776621 112467899999999999999999987543
No 47
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.20 E-value=0.015 Score=63.31 Aligned_cols=47 Identities=30% Similarity=0.337 Sum_probs=33.8
Q ss_pred CCCcCccHHHHHHHHHhc----CCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 159 QGYPISSKSKFLRKLLEQ----EETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 159 ~~~g~~~~~~~l~~LL~~----~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..+|.+...+.+...+.. +.....+.|+|++|+||||||+.+++...
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred HccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 345655555555555543 22346799999999999999999998754
No 48
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.20 E-value=0.0006 Score=67.07 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
...+.|+|++|+||||||+.+++..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998765
No 49
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.0069 Score=67.19 Aligned_cols=50 Identities=24% Similarity=0.350 Sum_probs=36.6
Q ss_pred CCCcCccHHHHHHHHHhc------------CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCc
Q 002972 159 QGYPISSKSKFLRKLLEQ------------EETHQVILIVGLSGIGKSCLARQVASDPPERF 208 (862)
Q Consensus 159 ~~~g~~~~~~~l~~LL~~------------~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F 208 (862)
...|.++..+.+.+.+.- -..++=|.++|++|+|||.||+++++.....|
T Consensus 149 dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f 210 (405)
T 4b4t_J 149 MVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF 210 (405)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc
Confidence 344788777777665431 12356789999999999999999999765443
No 50
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.0091 Score=67.13 Aligned_cols=49 Identities=27% Similarity=0.364 Sum_probs=35.7
Q ss_pred CCcCccHHHHHHHHHhc------------CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCc
Q 002972 160 GYPISSKSKFLRKLLEQ------------EETHQVILIVGLSGIGKSCLARQVASDPPERF 208 (862)
Q Consensus 160 ~~g~~~~~~~l~~LL~~------------~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F 208 (862)
..|.++..+.|.+.+.. -..++=|.++|++|+|||+||+++++.....|
T Consensus 183 igGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~ 243 (437)
T 4b4t_L 183 IGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF 243 (437)
T ss_dssp GCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE
T ss_pred hCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 33777777666665431 12367899999999999999999999765443
No 51
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.09 E-value=0.0076 Score=62.69 Aligned_cols=48 Identities=23% Similarity=0.338 Sum_probs=33.2
Q ss_pred cCCCcCccHHHHHHHHHhc---C--------CCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 158 EQGYPISSKSKFLRKLLEQ---E--------ETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~---~--------~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
...+|.++..+.+..++.. . ...+-+.|+|++|+||||||+.+++...
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 4556777666655554321 1 1134588999999999999999998653
No 52
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.06 E-value=0.00063 Score=78.22 Aligned_cols=105 Identities=10% Similarity=0.011 Sum_probs=92.8
Q ss_pred hHhhhccCccccccccchhhhcCchhHHHHhhcCCCCCcccccHHHHHHHhhhcCChhhHHHHhhhccHHHHHhhcCcch
Q 002972 601 EAITNIFSKGDYCSYIPSLETTGAVDKLAGLLQKSEDPMIQTDILTVLTKLAEFGTPETVDKVLQSIPFDKLATLLSYDA 680 (862)
Q Consensus 601 ~~i~~~~~~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~t~~~~~~~l~~l~e~~~~~~~~~~~~~~~~~~~~~l~~~~~ 680 (862)
+.+..+..+++|.++.+.+.. ...++.-+.|.+||.|...+.+.+..|.++|+|++|+.++++...... ..++++|
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~---aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~-~~lG~~H 389 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRE---CLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYM-KLYHHNN 389 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHH---HHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHSCTTC
T ss_pred HHHHHHHhCCCHHHHHHHHHH---HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHcCCCC
Confidence 344456689999999998877 677888899999999999999999999999999999999888766654 4999999
Q ss_pred hhhhHHHHHHHHHHHhhcchHHHHHHHHh
Q 002972 681 KEWHENMFTILMSLAKVGKSKAVEKMFAF 709 (862)
Q Consensus 681 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 709 (862)
+++-.++++....+.++|++++|+.|+.-
T Consensus 390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~ 418 (490)
T 3n71_A 390 AQLGMAVMRAGLTNWHAGHIEVGHGMICK 418 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999999999999999983
No 53
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.03 E-value=0.0013 Score=65.73 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..+.|+|++|+|||+||+.+++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6889999999999999999998664
No 54
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.013 Score=66.05 Aligned_cols=49 Identities=29% Similarity=0.335 Sum_probs=35.8
Q ss_pred CCcCccHHHHHHHHHhc------------CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCc
Q 002972 160 GYPISSKSKFLRKLLEQ------------EETHQVILIVGLSGIGKSCLARQVASDPPERF 208 (862)
Q Consensus 160 ~~g~~~~~~~l~~LL~~------------~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F 208 (862)
..|.++..+.|.+.+.- -..++=|.++|++|+|||.||+++++.....|
T Consensus 211 IgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f 271 (467)
T 4b4t_H 211 VGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF 271 (467)
T ss_dssp CTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE
T ss_pred hccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe
Confidence 33777777777664321 12367899999999999999999999765443
No 55
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.99 E-value=0.00078 Score=76.20 Aligned_cols=111 Identities=8% Similarity=-0.118 Sum_probs=92.7
Q ss_pred CccccccccchhhhcCchhHHHHhhcCCCCCcccccHHHHHHHhhhcCChhhHHHHhhhccHHHHHhhcCcchhhhhHHH
Q 002972 608 SKGDYCSYIPSLETTGAVDKLAGLLQKSEDPMIQTDILTVLTKLAEFGTPETVDKVLQSIPFDKLATLLSYDAKEWHENM 687 (862)
Q Consensus 608 ~~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~t~~~~~~~l~~l~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 687 (862)
..++|.++.+.+.. ...++.-+.|.+||.|...+.+.+..|.++|+|++|+.+.++....... .++++|+++-..+
T Consensus 310 ~~g~~~eA~~~~~~---~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~-~lG~~Hp~~a~~l 385 (433)
T 3qww_A 310 HYKSPSELLEICEL---SQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSK-HYPVYSLNVASMW 385 (433)
T ss_dssp TTSCHHHHHHHHHH---HHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HSCSSCHHHHHHH
T ss_pred hccCHHHHHHHHHH---HHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH-HcCCCChHHHHHH
Confidence 45678888888776 6777788999999999999999999999999999999998887666544 9999999999999
Q ss_pred HHHHHHHHhhcchHHHHHHHHhhhhHHHHHHhhcch
Q 002972 688 FTILMSLAKVGKSKAVEKMFAFEIDKNLIKLLENGS 723 (862)
Q Consensus 688 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (862)
++....+.++|++++|+.||.--+ +++.+.||...
T Consensus 386 ~nLa~~~~~qg~~~eA~~~~~~Al-~i~~~~lG~~H 420 (433)
T 3qww_A 386 LKLGRLYMGLENKAAGEKALKKAI-AIMEVAHGKDH 420 (433)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCTTC
T ss_pred HHHHHHHHhccCHHHHHHHHHHHH-HHHHHHcCCCC
Confidence 999999999999999999998422 23344555444
No 56
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.0057 Score=68.64 Aligned_cols=51 Identities=22% Similarity=0.336 Sum_probs=36.5
Q ss_pred cCCCcCccHHHHHHHHHhc------------CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCc
Q 002972 158 EQGYPISSKSKFLRKLLEQ------------EETHQVILIVGLSGIGKSCLARQVASDPPERF 208 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~------------~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F 208 (862)
....|.++..+.|.+.+.. -..++=|.++|++|+|||+||+++++.....|
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~ 234 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF 234 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 3444777777766665431 12366799999999999999999999765443
No 57
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.0088 Score=67.19 Aligned_cols=49 Identities=20% Similarity=0.217 Sum_probs=35.3
Q ss_pred CCCcCccHHHHHHHHHh----c--------CCCceEEEEEcCCCCCHHHHHHHHHhCCCCC
Q 002972 159 QGYPISSKSKFLRKLLE----Q--------EETHQVILIVGLSGIGKSCLARQVASDPPER 207 (862)
Q Consensus 159 ~~~g~~~~~~~l~~LL~----~--------~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~ 207 (862)
...|.++..+.|.+.+. . -..++=|.++|++|+|||.||+++++.....
T Consensus 182 digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~ 242 (434)
T 4b4t_M 182 DVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT 242 (434)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred hcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC
Confidence 33477776666665432 1 1236789999999999999999999976544
No 58
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.016 Score=64.68 Aligned_cols=48 Identities=23% Similarity=0.376 Sum_probs=35.3
Q ss_pred CcCccHHHHHHHHHhc------------CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCc
Q 002972 161 YPISSKSKFLRKLLEQ------------EETHQVILIVGLSGIGKSCLARQVASDPPERF 208 (862)
Q Consensus 161 ~g~~~~~~~l~~LL~~------------~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F 208 (862)
.|.++..+.|.+.+.. -..++=|.++|++|.|||.||+++++.....|
T Consensus 185 gGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f 244 (437)
T 4b4t_I 185 GGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF 244 (437)
T ss_dssp CSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE
T ss_pred CcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE
Confidence 3777777766665421 12257799999999999999999999765443
No 59
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.89 E-value=0.0019 Score=79.59 Aligned_cols=46 Identities=13% Similarity=0.252 Sum_probs=36.5
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.+.+|+++..+.+...+.... ..-+.++|.+|+|||+||+.+++..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~-~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT-KNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS-CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCC-CCceEEEcCCCCCHHHHHHHHHHHH
Confidence 456788888888888776642 3456899999999999999999865
No 60
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.85 E-value=0.0036 Score=71.52 Aligned_cols=46 Identities=17% Similarity=0.292 Sum_probs=37.2
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.+.+|+++..+.+...+.... ..-+.|+|.+|+|||+||+.+++..
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~-~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT-KNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS-SCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccC-CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 456799988888888887643 3356799999999999999999875
No 61
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.81 E-value=0.0067 Score=69.56 Aligned_cols=47 Identities=23% Similarity=0.311 Sum_probs=35.8
Q ss_pred CCCcCccHHHHHHHHHhc------------CCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 159 QGYPISSKSKFLRKLLEQ------------EETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 159 ~~~g~~~~~~~l~~LL~~------------~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..+|.++..+.+..++.. ....+-|.|+|.+|+|||+||+.+++...
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~ 263 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC
Confidence 355777777777776542 13356789999999999999999998764
No 62
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.72 E-value=0.017 Score=65.87 Aligned_cols=48 Identities=29% Similarity=0.353 Sum_probs=34.0
Q ss_pred cCCCcCccHHHHHHHHHhc---C--------CCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 158 EQGYPISSKSKFLRKLLEQ---E--------ETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~---~--------~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
....|.++..+.+..+... . .-++-|.|+|++|+|||+||+.+++...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4456777766666655431 0 1134588999999999999999998654
No 63
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.64 E-value=0.013 Score=71.05 Aligned_cols=46 Identities=22% Similarity=0.223 Sum_probs=36.8
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.+.+|+++..+.+...+.... ..-+.|+|.+|+|||++|+.+++..
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~-~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR-KNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS-SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccC-CCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 456688888888888877643 3456799999999999999998764
No 64
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.60 E-value=0.015 Score=54.82 Aligned_cols=46 Identities=24% Similarity=0.170 Sum_probs=31.8
Q ss_pred CCcCccHHHHHHHHHhc-CCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 160 GYPISSKSKFLRKLLEQ-EETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 160 ~~g~~~~~~~l~~LL~~-~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+|.++..+.+...+.. .....-|.|+|.+|+|||++|+.+++...
T Consensus 3 iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 3 LIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred ceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 34666666666555432 12234578999999999999999998753
No 65
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.58 E-value=0.013 Score=58.96 Aligned_cols=45 Identities=20% Similarity=0.046 Sum_probs=31.6
Q ss_pred HHHHHHhc-CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEee
Q 002972 169 FLRKLLEQ-EETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (862)
Q Consensus 169 ~l~~LL~~-~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 217 (862)
.+..++.. -..-.++.|+|.+|+||||||..++. . -...++|++.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~--~~~~v~~i~~ 53 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L--SGKKVAYVDT 53 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H--HCSEEEEEES
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H--cCCcEEEEEC
Confidence 45555542 23356999999999999999999988 1 2245666554
No 66
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.56 E-value=0.0062 Score=65.12 Aligned_cols=45 Identities=18% Similarity=0.270 Sum_probs=31.8
Q ss_pred CCcCccHHHHHHHHHhcC--------CCceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 160 GYPISSKSKFLRKLLEQE--------ETHQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 160 ~~g~~~~~~~l~~LL~~~--------~~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.+|.+...+.+...+... .....+.++|++|+|||++|+.+++..
T Consensus 19 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 19 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 346665555555544331 124589999999999999999999865
No 67
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.55 E-value=0.0015 Score=62.46 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
....++|+|..|+|||||++.+++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999997653
No 68
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.51 E-value=0.0014 Score=74.02 Aligned_cols=119 Identities=4% Similarity=-0.128 Sum_probs=95.7
Q ss_pred hhHhhhccCccccccccchhhhcCchhHHHHhhcCCCCCcccccHHHHHHHhhhcCChhhHHHHhhhccHHHHHhhcCcc
Q 002972 600 AEAITNIFSKGDYCSYIPSLETTGAVDKLAGLLQKSEDPMIQTDILTVLTKLAEFGTPETVDKVLQSIPFDKLATLLSYD 679 (862)
Q Consensus 600 ~~~i~~~~~~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~t~~~~~~~l~~l~e~~~~~~~~~~~~~~~~~~~~~l~~~~ 679 (862)
.+.+..+..+++|.++...+.. ....+.-+.|.+|+.|...+.+.+..|.++|+|++|+.+.++....... .++++
T Consensus 291 l~~ie~~~~~g~~~~a~~~~~~---~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~-~lg~~ 366 (429)
T 3qwp_A 291 LKKIEELKAHWKWEQVLAMCQA---IISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRI-FFPGS 366 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH---HHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-HSCSS
T ss_pred HHHHHHHHhhccHHHHHHHHHH---HHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHH-HcCCC
Confidence 3445556678888888777655 4455566789999999999999999999999999999998887666544 89999
Q ss_pred hhhhhHHHHHHHHHHHhhcchHHHHHHHHhhhhHHHHHHhhcch
Q 002972 680 AKEWHENMFTILMSLAKVGKSKAVEKMFAFEIDKNLIKLLENGS 723 (862)
Q Consensus 680 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (862)
++.+-..+++....+.++|++++|+.|+.--+ +++.+.||...
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al-~i~~~~lG~~H 409 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF-DIMRVTHGREH 409 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCTTS
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHHHHhcCCCC
Confidence 99999999999999999999999999988422 23445555544
No 69
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.43 E-value=0.012 Score=71.51 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=37.3
Q ss_pred cCCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.+.+|+++..+.+...+..... .-+.++|.+|+|||++|+.+++..
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~-~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTK-NNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSS-CEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCCC-CCeEEECCCCCCHHHHHHHHHHHH
Confidence 4577999888888888876433 346799999999999999999874
No 70
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.42 E-value=0.012 Score=56.48 Aligned_cols=22 Identities=45% Similarity=0.767 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 002972 181 QVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
.+|+|.|++|+||||+|+.+ ..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 47999999999999999999 44
No 71
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.42 E-value=0.024 Score=68.41 Aligned_cols=48 Identities=23% Similarity=0.305 Sum_probs=35.6
Q ss_pred CCcCccHHHHHHHHHh----cC--------CCceEEEEEcCCCCCHHHHHHHHHhCCCCC
Q 002972 160 GYPISSKSKFLRKLLE----QE--------ETHQVILIVGLSGIGKSCLARQVASDPPER 207 (862)
Q Consensus 160 ~~g~~~~~~~l~~LL~----~~--------~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~ 207 (862)
..|.++..+.|.+++. .. ..++-|.++|++|+|||+||+++++.....
T Consensus 206 IgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~ 265 (806)
T 3cf2_A 206 IGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp CCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE
T ss_pred hcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 3377777777766543 11 226789999999999999999999987644
No 72
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.39 E-value=0.004 Score=71.55 Aligned_cols=116 Identities=7% Similarity=-0.148 Sum_probs=96.9
Q ss_pred CcccccccchhHhhhccCccccccccchhhhcCchhHHHHhhcCCCCCcccccHHHHHHHhhhcCChhhHHHHhhhccHH
Q 002972 591 DSQSLTVVSAEAITNIFSKGDYCSYIPSLETTGAVDKLAGLLQKSEDPMIQTDILTVLTKLAEFGTPETVDKVLQSIPFD 670 (862)
Q Consensus 591 r~L~l~~s~~~~i~~~~~~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~t~~~~~~~l~~l~e~~~~~~~~~~~~~~~~~ 670 (862)
.++++-.+..+....+..+++|.++.+.+.. ...++..+.|.+||.|...+.++...|..+|++++|+.++++...-
T Consensus 346 ~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~---aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i 422 (490)
T 3n71_A 346 TNLYVLRLLSIASEVLSYLQAYEEASHYARR---MVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI 422 (490)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH---HHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH---HHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4555555556666677789999999999887 6778888999999999999999999999999999999998886655
Q ss_pred HHHhhcCcchhhhhHHHHHHHHHHHhhcchHHHHHHHHhh
Q 002972 671 KLATLLSYDAKEWHENMFTILMSLAKVGKSKAVEKMFAFE 710 (862)
Q Consensus 671 ~~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 710 (862)
.. ..+|++|+.+.+...........+|+++.|+.||.-.
T Consensus 423 ~~-~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 423 LL-VTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HH-HHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 3788888888877777777888999999999999843
No 73
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.37 E-value=0.008 Score=56.72 Aligned_cols=46 Identities=13% Similarity=0.148 Sum_probs=31.2
Q ss_pred CCcCccHHHHHHHHHhc-CCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 160 GYPISSKSKFLRKLLEQ-EETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 160 ~~g~~~~~~~l~~LL~~-~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+|.++..+.+...+.. .....-|.|+|.+|+|||++|+.+++...
T Consensus 6 ~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 6 KLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp --CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred ceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 34666666666665543 11223477999999999999999987654
No 74
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.24 E-value=0.0068 Score=64.70 Aligned_cols=29 Identities=24% Similarity=0.086 Sum_probs=24.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCc
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERF 208 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F 208 (862)
++.+.++|++|+|||+||+.+++.....|
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~~ 64 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGINP 64 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 56888999999999999999998875443
No 75
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.18 E-value=0.04 Score=59.03 Aligned_cols=40 Identities=18% Similarity=0.167 Sum_probs=31.6
Q ss_pred CccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhC
Q 002972 163 ISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 163 ~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
-++-.+.+...+..+. .+.+.++|++|+||||+|+.+++.
T Consensus 2 ~~~~~~~L~~~i~~~~-~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 2 AKDQLETLKRIIEKSE-GISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp --CHHHHHHHHHHTCS-SEEEEEECSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCC-CcEEEEECCCCCCHHHHHHHHHHh
Confidence 3455667777777665 778999999999999999999874
No 76
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.01 E-value=0.0056 Score=65.78 Aligned_cols=72 Identities=13% Similarity=0.211 Sum_probs=45.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHhccccccCCCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDENS 259 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~lg~~~~~~~~~~ 259 (862)
.+++.|+|++|+|||+||.+++.. . ...+.|+++.. ... + . ... .
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-~---G~~VlyIs~~~---------eE~---------v-------~---~~~---~ 167 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-L---GGKDKYATVRF---------GEP---------L-------S---GYN---T 167 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-H---HTTSCCEEEEB---------SCS---------S-------T---TCB---C
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-C---CCCEEEEEecc---------hhh---------h-------h---hhh---c
Confidence 457889999999999999999876 1 12234444411 000 0 0 000 3
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEcCCCc
Q 002972 260 DLEYLCCLLQEALYGKSILILLDDVWEQ 287 (862)
Q Consensus 260 ~~~~l~~~l~~~L~~kr~LLVLDDV~~~ 287 (862)
+.+.....+.+.+.+.+ +||+|++...
T Consensus 168 ~le~~l~~i~~~l~~~~-LLVIDsI~aL 194 (331)
T 2vhj_A 168 DFNVFVDDIARAMLQHR-VIVIDSLKNV 194 (331)
T ss_dssp CHHHHHHHHHHHHHHCS-EEEEECCTTT
T ss_pred CHHHHHHHHHHHHhhCC-EEEEeccccc
Confidence 45555666666666666 9999998643
No 77
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.84 E-value=0.025 Score=57.22 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=26.0
Q ss_pred HHHHHHhc-CCCceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 169 FLRKLLEQ-EETHQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 169 ~l~~LL~~-~~~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.+..++.. -..-.+++|+|.+|+|||||++.++...
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34455532 1224689999999999999999998543
No 78
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.70 E-value=0.038 Score=55.86 Aligned_cols=49 Identities=29% Similarity=0.287 Sum_probs=32.2
Q ss_pred HHHHHHhcC-CCceEEEEEcCCCCCHHHHHHHHHhCCCC-----CccCceEEEee
Q 002972 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPE-----RFVGGAVELGF 217 (862)
Q Consensus 169 ~l~~LL~~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~~-----~F~~~~~~~~~ 217 (862)
.+..++... ..-.+++|+|.+|+|||||++.++..... ....+++|++-
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~ 67 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 67 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEES
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEEC
Confidence 344555432 23579999999999999999999863321 13345665543
No 79
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=95.47 E-value=0.25 Score=48.74 Aligned_cols=193 Identities=19% Similarity=0.246 Sum_probs=119.1
Q ss_pred hhHHHHhhcCCCCCcccccHHHHHHHhhhcCChhhHHHHhhhccHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchHHHH
Q 002972 625 VDKLAGLLQKSEDPMIQTDILTVLTKLAEFGTPETVDKVLQSIPFDKLATLLSYDAKEWHENMFTILMSLAKVGKSKAVE 704 (862)
Q Consensus 625 l~~l~~~~~~~~~~~t~~~~~~~l~~l~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 704 (862)
...|..++ ..+++....+....|..++. ++.+..+.+.+.=-+..+..+|...+++........+..++. +.-....
T Consensus 14 ~~~l~~LL-~s~~~~v~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~-~~~~~~~ 90 (210)
T 4db6_A 14 LPQMVQQL-NSPDQQELQSALRKLSQIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQ 90 (210)
T ss_dssp HHHHHHHT-TCSCHHHHHHHHHHHHHHHT-SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT-SCHHHHH
T ss_pred hHHHHHHh-cCCCHHHHHHHHHHHHHHHc-CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc-CCcHHHH
Confidence 44554554 34556556666666666642 333333444333233456678877777666655555555553 2233456
Q ss_pred HHHHhhhhHHHHHHhhcchhhHHHHHHHHHHHHHHhhCCCcc-ccccCCcccccccccccccceeEeecCCCCCCCCccc
Q 002972 705 KMFAFEIDKNLIKLLENGSEVVQHHAIVTLKAFYELAGSPAN-ASLRPANLNLLPWQVRLRLERFIISDRTVPPSPKSQT 783 (862)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (862)
.+...|.=..|+.+|.+++.-++..|..+|..+.. +.|.. .. +.+.. -
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~--~~~~~~~~---------------------~~~~~--------~ 139 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIAS--GGNEQIQA---------------------VIDAG--------A 139 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT--SCHHHHHH---------------------HHHTT--------H
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHc--CCHHHHHH---------------------HHHcC--------c
Confidence 66778888999999999998888887655554432 11211 00 01111 1
Q ss_pred HHHHHHHHhcCCchhHHHHhhhhhhHHHhhCCchhHHHHhhcCChHHHHHhhccCcchhhhhhhhhhHHH
Q 002972 784 FEDVIHRLLDGDNKQVQGATQDLIPFLEKAGGEPCIKKFLEYDIIPELVKMMQCCVPEIQDSAYAAPDVL 853 (862)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 853 (862)
+..++.-+-++|..-...|+.-|.-++. +++.....+.+.|.++-|+.+++...+++|..|..||..|
T Consensus 140 i~~L~~ll~~~~~~v~~~a~~aL~~l~~--~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 140 LPALVQLLSSPNEQILQEALWALSNIAS--GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHT--SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHc--CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4555555544544444455555555543 5577788899999999999999988888999999998765
No 80
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.47 E-value=0.028 Score=54.64 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 002972 180 HQVILIVGLSGIGKSCLARQVA 201 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~ 201 (862)
..+++|+|+.|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999754
No 81
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.32 E-value=0.0035 Score=68.91 Aligned_cols=121 Identities=11% Similarity=0.093 Sum_probs=69.3
Q ss_pred HHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHh
Q 002972 169 FLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQI 248 (862)
Q Consensus 169 ~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~l 248 (862)
.+..++... ..+++|+|+.|+|||||.+.+...........++. +...+. . ..... . ....+.
T Consensus 114 ~l~~l~~~~--~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t--~ed~~e--~---~~~~~-------~-~~v~q~ 176 (356)
T 3jvv_A 114 VFKRVSDVP--RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILT--IEDPIE--F---VHESK-------K-CLVNQR 176 (356)
T ss_dssp HHHHHHHCS--SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEE--EESSCC--S---CCCCS-------S-SEEEEE
T ss_pred HHHHHHhCC--CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEE--ccCcHH--h---hhhcc-------c-cceeee
Confidence 455555443 34999999999999999999876443111111211 110000 0 00000 0 000000
Q ss_pred ccccccCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHhhccCCCceEEEEccchhhh
Q 002972 249 GFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLYDNDCKYLVTTRNEAVY 313 (862)
Q Consensus 249 g~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~~~~~l~~~~~~gsrILvTTR~~~va 313 (862)
...... ......+...|...+=+|++|.+.+.+.++.+......|..||+||...+.+
T Consensus 177 ----~~~~~~---~~~~~~La~aL~~~PdvillDEp~d~e~~~~~~~~~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 177 ----EVHRDT---LGFSEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAA 234 (356)
T ss_dssp ----EBTTTB---SCHHHHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEESCSSHH
T ss_pred ----eecccc---CCHHHHHHHHhhhCcCEEecCCCCCHHHHHHHHHHHhcCCEEEEEEccChHH
Confidence 001111 1234478888888999999999999888877665555677899999887544
No 82
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.28 E-value=0.2 Score=51.46 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|+.|+|||||.+.++--.+
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 35999999999999999999986554
No 83
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=95.14 E-value=0.37 Score=48.94 Aligned_cols=200 Identities=20% Similarity=0.253 Sum_probs=122.5
Q ss_pred hhhhcCchhHHHHhhcCCCCCcccccHHHHHHHhhhcCChhhHHHHhhhccHHHHHhhcCcchhhhhHHHHHHHHHHHhh
Q 002972 618 SLETTGAVDKLAGLLQKSEDPMIQTDILTVLTKLAEFGTPETVDKVLQSIPFDKLATLLSYDAKEWHENMFTILMSLAKV 697 (862)
Q Consensus 618 ~l~~~~~l~~l~~~~~~~~~~~t~~~~~~~l~~l~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 697 (862)
.+.+.|.+..|..++.... +.........|..++. +..+..+.+.+.=-+..+..++...+++........+..++.-
T Consensus 49 ~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 126 (252)
T 4db8_A 49 AVIDAGALPALVQLLSSPN-EQILQEALWALSNIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 126 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTT-SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Confidence 4555677888877776543 4444555555555532 2333334443332334566788777777777667777776654
Q ss_pred cchHHHHHHHHhhhhHHHHHHhhcchhhHHHHHHHHHHHHHHhhCC-CccccccCCcccccccccccccceeEeecCCCC
Q 002972 698 GKSKAVEKMFAFEIDKNLIKLLENGSEVVQHHAIVTLKAFYELAGS-PANASLRPANLNLLPWQVRLRLERFIISDRTVP 776 (862)
Q Consensus 698 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 (862)
... ....+...|.=..|+++|.+++.-++..|+. ++..+... |.+.. .+.+..+
T Consensus 127 ~~~-~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~---~L~~l~~~~~~~~~--------------------~~~~~~~- 181 (252)
T 4db8_A 127 GNE-QIQAVIDAGALPALVQLLSSPNEQILQEALW---ALSNIASGGNEQIQ--------------------AVIDAGA- 181 (252)
T ss_dssp CHH-HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHH---HHHHHTTSCHHHHH--------------------HHHHTTC-
T ss_pred Cch-HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHH---HHHHHHcCChHHHH--------------------HHHHCCC-
Confidence 433 3466777888899999999998777777654 44555442 21100 0011112
Q ss_pred CCCCcccHHHHHHHHhcCCchhHHHHhhhhhhHHHhhCCchhHHHHhhcCChHHHHHhhccCcchhhhhhhhhhHHH
Q 002972 777 PSPKSQTFEDVIHRLLDGDNKQVQGATQDLIPFLEKAGGEPCIKKFLEYDIIPELVKMMQCCVPEIQDSAYAAPDVL 853 (862)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 853 (862)
+..++.-+-++|..-...|+.-|.-++ .+.+.....+++.|+++-|+.+++-.-+++|..|..||.-+
T Consensus 182 -------i~~L~~ll~~~~~~v~~~a~~~L~~l~--~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 182 -------LPALVQLLSSPNEQILQEALWALSNIA--SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp -------HHHHHHGGGCSSHHHHHHHHHHHHHHT--TSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred -------HHHHHHHHCCCCHHHHHHHHHHHHHHh--cCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 444554444443333344444444444 35667788899999999999999988888999998888644
No 84
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.09 E-value=0.033 Score=58.68 Aligned_cols=24 Identities=42% Similarity=0.432 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
-.++.|+|.+|+|||||+..++..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 469999999999999999998853
No 85
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.06 E-value=0.31 Score=49.55 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|+.|+|||||.+.++--..
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35899999999999999999986543
No 86
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=95.05 E-value=0.11 Score=52.56 Aligned_cols=203 Identities=21% Similarity=0.256 Sum_probs=125.9
Q ss_pred ccchhhhcCchhHHHHhhcCCCCCcccccHHHHHHHhhhcCChhhHHHHhhhccHHHHHhhcCcchhhhhHHHHHHHHHH
Q 002972 615 YIPSLETTGAVDKLAGLLQKSEDPMIQTDILTVLTKLAEFGTPETVDKVLQSIPFDKLATLLSYDAKEWHENMFTILMSL 694 (862)
Q Consensus 615 ~~~~l~~~~~l~~l~~~~~~~~~~~t~~~~~~~l~~l~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 694 (862)
....+.+.|.+..|..++... ++.........|..++.. ..+..+.+.+.--+..+..++...+++........+..+
T Consensus 36 ~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l 113 (252)
T 4hxt_A 36 AIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 113 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcC-ChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 334445567788887777554 454555566666666432 233334443433344577788888887777777777777
Q ss_pred HhhcchHHHHHHHHhhhhHHHHHHhhcchhhHHHHHHHHHHHHHHhhC-CCcc--ccccCCcccccccccccccceeEee
Q 002972 695 AKVGKSKAVEKMFAFEIDKNLIKLLENGSEVVQHHAIVTLKAFYELAG-SPAN--ASLRPANLNLLPWQVRLRLERFIIS 771 (862)
Q Consensus 695 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (862)
+.... +....+...|.=..|+++|.+.++-++..|+. ++..+.. +|.. .....|.
T Consensus 114 ~~~~~-~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~---~L~~l~~~~~~~~~~~~~~~~------------------ 171 (252)
T 4hxt_A 114 ASGPD-EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR---ALANIASGPDEAIKAIVDAGG------------------ 171 (252)
T ss_dssp TTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHH---HHHHHTTSCHHHHHHHHHTTH------------------
T ss_pred HcCCH-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHH---HHHHHHcCCHHHHHHHHHCcC------------------
Confidence 75333 35566777888889999999998777777654 4445543 2211 1111221
Q ss_pred cCCCCCCCCcccHHHHHHHHhcCCchhHHHHhhhhhhHHHhhCCchhHHHHhhcCChHHHHHhhccCcchhhhhhhhhhH
Q 002972 772 DRTVPPSPKSQTFEDVIHRLLDGDNKQVQGATQDLIPFLEKAGGEPCIKKFLEYDIIPELVKMMQCCVPEIQDSAYAAPD 851 (862)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 851 (862)
+..++.-+-+.|..-...|+.-|.-++. +.....+.+.+.|+++.|+.+++..-+++|..|..||.
T Consensus 172 ------------i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 237 (252)
T 4hxt_A 172 ------------VEVLVKLLTSTDSEVQKEAARALANIAS--GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALE 237 (252)
T ss_dssp ------------HHHHHHHTTCSCHHHHHHHHHHHHHHTT--SBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHCCCCHHHHHHHHHHHHHHHc--CCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 3333333333333223333333333332 45567788899999999999999888889999999988
Q ss_pred HHHH
Q 002972 852 VLQQ 855 (862)
Q Consensus 852 ~~~~ 855 (862)
-+-.
T Consensus 238 ~l~~ 241 (252)
T 4hxt_A 238 NIKS 241 (252)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 7754
No 87
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.04 E-value=0.21 Score=57.16 Aligned_cols=48 Identities=27% Similarity=0.430 Sum_probs=33.7
Q ss_pred cCCCcCccHHHHHHHHHh---cC--------CCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 158 EQGYPISSKSKFLRKLLE---QE--------ETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~---~~--------~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
...+|.++....+..+.. .. .-.+-|.|+|++|+||||||+.++....
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 455677766666655532 11 0123489999999999999999998764
No 88
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.93 E-value=0.18 Score=51.05 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|+.|+|||||.+.++--.+
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35899999999999999999987654
No 89
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.92 E-value=0.012 Score=57.29 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+|.|+|++|+||||+|+.++....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999998764
No 90
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.84 E-value=0.33 Score=50.45 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|+.|+|||||.+.++--.+
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45999999999999999999987543
No 91
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.70 E-value=0.081 Score=64.10 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=32.7
Q ss_pred CCCcCccHHHHHHHHHhcC--------CCceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 159 QGYPISSKSKFLRKLLEQE--------ETHQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 159 ~~~g~~~~~~~l~~LL~~~--------~~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..+|.+...+.+...+... .....+.++|++|+|||++|+.+++..
T Consensus 492 ~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 492 RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4557776665555554321 113379999999999999999999865
No 92
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.65 E-value=0.17 Score=52.48 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
-.+++|+|+.|+|||||.+.++--.+.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 358999999999999999999876543
No 93
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.57 E-value=0.03 Score=55.07 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
..+++|+|++|+|||||++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999886
No 94
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=94.55 E-value=0.27 Score=49.70 Aligned_cols=192 Identities=21% Similarity=0.240 Sum_probs=113.0
Q ss_pred hhHHHHhhcCCCCCcccccHHHHHHHhhhcCChhhHHHHhhhccHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchHHHH
Q 002972 625 VDKLAGLLQKSEDPMIQTDILTVLTKLAEFGTPETVDKVLQSIPFDKLATLLSYDAKEWHENMFTILMSLAKVGKSKAVE 704 (862)
Q Consensus 625 l~~l~~~~~~~~~~~t~~~~~~~l~~l~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 704 (862)
+..|..++... ++.+.......+..+..... +....+.+.--+..+..++...+++........+..++.-... ...
T Consensus 4 i~~L~~~L~~~-~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~ 80 (252)
T 4hxt_A 4 VEKLVKLLTST-DSETQKEAARDLAEIASGPA-SAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE-AIK 80 (252)
T ss_dssp HHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH-HHH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCc-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH-HHH
Confidence 44554554433 34444455555555533222 3334443433345567788877777777667777777654332 455
Q ss_pred HHHHhhhhHHHHHHhhcchhhHHHHHHHHHHHHHHhhCCC-ccc-cccCCcccccccccccccceeEeecCCCCCCCCcc
Q 002972 705 KMFAFEIDKNLIKLLENGSEVVQHHAIVTLKAFYELAGSP-ANA-SLRPANLNLLPWQVRLRLERFIISDRTVPPSPKSQ 782 (862)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (862)
.+...|.=..|+.+|.+.++-++..|..+|..+.. ..| ... ....|.
T Consensus 81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~----------------------------- 129 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS--GPDEAIKAIVDAGG----------------------------- 129 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTH-----------------------------
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc--CCHHHHHHHHHCCC-----------------------------
Confidence 56667888889999999987778777655554432 323 111 111221
Q ss_pred cHHHHHHHHhcCCchhHHHHhhhhhhHHHhhCCchhHHHHhhcCChHHHHHhhccCcchhhhhhhhhhHHH
Q 002972 783 TFEDVIHRLLDGDNKQVQGATQDLIPFLEKAGGEPCIKKFLEYDIIPELVKMMQCCVPEIQDSAYAAPDVL 853 (862)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 853 (862)
+..++.-+.+++..-...|+.-|--++. +.+...+.+.+.|+++.|+.+++..-+++|..|..||..+
T Consensus 130 -i~~L~~~l~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 197 (252)
T 4hxt_A 130 -VEVLVKLLTSTDSEVQKEAARALANIAS--GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 197 (252)
T ss_dssp -HHHHHHHTTCSCHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHcCCCHHHHHHHHHHHHHHHc--CCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 3444433333343333333333333332 3455668899999999999999987788999888887655
No 95
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.54 E-value=0.24 Score=51.47 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|+|||||.+.++.-.+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35899999999999999999987654
No 96
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.51 E-value=0.15 Score=55.49 Aligned_cols=49 Identities=18% Similarity=0.125 Sum_probs=34.0
Q ss_pred HHHHHHhcC-CCceEEEEEcCCCCCHHHHHHHHHhCCCC-C----ccCceEEEee
Q 002972 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPE-R----FVGGAVELGF 217 (862)
Q Consensus 169 ~l~~LL~~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~~-~----F~~~~~~~~~ 217 (862)
.+..+|..+ ..-.++.|+|.+|+||||||.+++..... . ....++|++.
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~ 164 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDT 164 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEES
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEEC
Confidence 456666532 33579999999999999999999875321 1 2345666665
No 97
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.50 E-value=0.036 Score=58.06 Aligned_cols=111 Identities=15% Similarity=0.178 Sum_probs=60.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeee-eeecccccCCCchHHHHHHHHHHHHHHHhccccccCCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQ-WCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDE 257 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~-w~~~~~~~~s~~~~~~~l~~~i~~~l~~lg~~~~~~~~ 257 (862)
.-.+++|+|+.|+|||||.+.+.......+...+++..-.. .+.. .... + ..+. .....
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~-----~~~~--------~---v~q~----~~gl~ 83 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFK-----HKKS--------I---VNQR----EVGED 83 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCC-----CSSS--------E---EEEE----EBTTT
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecC-----Ccce--------e---eeHH----HhCCC
Confidence 35699999999999999999987644321123332221100 0000 0000 0 0000 00001
Q ss_pred CCCHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHhhccCCCceEEEEccchhh
Q 002972 258 NSDLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLYDNDCKYLVTTRNEAV 312 (862)
Q Consensus 258 ~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~~~~~l~~~~~~gsrILvTTR~~~v 312 (862)
... +...+...|..++=+|++|...|.+....+......|..|++||.+.+.
T Consensus 84 ~~~---l~~~la~aL~~~p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 84 TKS---FADALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTA 135 (261)
T ss_dssp BSC---HHHHHHHHHHHCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSH
T ss_pred HHH---HHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchH
Confidence 112 2445666666677789999998776655444333457788899887653
No 98
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.49 E-value=0.49 Score=49.37 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|+.|+|||||.+.++--.+
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 46999999999999999999987654
No 99
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.44 E-value=0.067 Score=53.18 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..+|+|.|++|+||||+|+.++...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998764
No 100
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.32 E-value=0.019 Score=60.02 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=34.8
Q ss_pred cCCCcCccHHHHHHHHHhc-----------CCCceEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 158 EQGYPISSKSKFLRKLLEQ-----------EETHQVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~-----------~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
...+|.++..+.+..++.. ....+-+.|+|++|+|||+||+.+++....
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4566777766666665541 111334779999999999999999986543
No 101
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.29 E-value=0.061 Score=56.55 Aligned_cols=48 Identities=27% Similarity=0.417 Sum_probs=32.5
Q ss_pred cCCCcCccHHHHHHHHHhc--C---------CCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 158 EQGYPISSKSKFLRKLLEQ--E---------ETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~~--~---------~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
...+|.++..+.+..+... . .-.+-+.|+|++|+||||||+.++....
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 4455776665555554321 0 0122389999999999999999998765
No 102
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.29 E-value=0.022 Score=54.82 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+|+|.|++|+||||+|+.++....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999987643
No 103
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=94.26 E-value=0.31 Score=49.56 Aligned_cols=181 Identities=17% Similarity=0.221 Sum_probs=106.8
Q ss_pred CCCcccccHHHHHHHhhhcCChhhHHHHhhhccHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchHHHHHHHHhhhhHHH
Q 002972 636 EDPMIQTDILTVLTKLAEFGTPETVDKVLQSIPFDKLATLLSYDAKEWHENMFTILMSLAKVGKSKAVEKMFAFEIDKNL 715 (862)
Q Consensus 636 ~~~~t~~~~~~~l~~l~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 715 (862)
+++.........+..+... +....+.+.+.=-+..+..+|...+++........+..++.- .-.....+...|.=..|
T Consensus 24 ~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L 101 (252)
T 4db8_A 24 DDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPAL 101 (252)
T ss_dssp SCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHH
Confidence 4454555555555332222 223333343333344567788777766665555666666542 23345566677888899
Q ss_pred HHHhhcchhhHHHHHHHHHHHHHHhhCCC-c--cccccCCcccccccccccccceeEeecCCCCCCCCcccHHHHHHHHh
Q 002972 716 IKLLENGSEVVQHHAIVTLKAFYELAGSP-A--NASLRPANLNLLPWQVRLRLERFIISDRTVPPSPKSQTFEDVIHRLL 792 (862)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (862)
+++|.+++.-++..|+.+|..+ +..+ . ......|. +..++.-+-
T Consensus 102 ~~lL~~~~~~v~~~a~~~L~~l---~~~~~~~~~~~~~~~~------------------------------i~~L~~lL~ 148 (252)
T 4db8_A 102 VQLLSSPNEQILQEALWALSNI---ASGGNEQIQAVIDAGA------------------------------LPALVQLLS 148 (252)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHH---TTSCHHHHHHHHHTTH------------------------------HHHHHHGGG
T ss_pred HHHHcCCCHHHHHHHHHHHHHh---hcCCchHHHHHHHCCC------------------------------HHHHHHHHh
Confidence 9999999877888776555544 3323 1 12222332 233443333
Q ss_pred cCCchhHHHHhhhhhhHHHhhCCchhHHHHhhcCChHHHHHhhccCcchhhhhhhhhhHHH
Q 002972 793 DGDNKQVQGATQDLIPFLEKAGGEPCIKKFLEYDIIPELVKMMQCCVPEIQDSAYAAPDVL 853 (862)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 853 (862)
++|..-...|..-|.-++ .+.......+.+.++|+-|+.++...-+++|..|..||..+
T Consensus 149 ~~~~~v~~~a~~~L~~l~--~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 207 (252)
T 4db8_A 149 SPNEQILQEALWALSNIA--SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 207 (252)
T ss_dssp CSCHHHHHHHHHHHHHHT--TSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH--cCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 333333333444333333 23456677888999999999999988788999988888765
No 104
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.25 E-value=0.54 Score=48.25 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|+|||||.+.++--.+
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35899999999999999999986543
No 105
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.25 E-value=0.025 Score=54.86 Aligned_cols=22 Identities=41% Similarity=0.688 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 002972 181 QVILIVGLSGIGKSCLARQVAS 202 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~ 202 (862)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999997
No 106
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.19 E-value=0.16 Score=49.72 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..+|+|.|++|+||||+|+.+++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998754
No 107
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.18 E-value=0.41 Score=48.83 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|+.|+|||||.+.++.-.+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 35899999999999999999987654
No 108
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.16 E-value=0.76 Score=47.98 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
-.+++|+|..|+|||||.+.++--
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999999985
No 109
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.97 E-value=0.14 Score=55.14 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=31.7
Q ss_pred HHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEee
Q 002972 169 FLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (862)
Q Consensus 169 ~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 217 (862)
.+..++..-..-.++.|.|.+|+||||||.+++.....+- ..++|+++
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g-~~vl~~sl 104 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND-DVVNLHSL 104 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT-CEEEEEES
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-CeEEEEEC
Confidence 3445553323456999999999999999999986543221 34555544
No 110
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.96 E-value=0.1 Score=56.40 Aligned_cols=49 Identities=29% Similarity=0.263 Sum_probs=33.6
Q ss_pred HHHHHHhcC-CCceEEEEEcCCCCCHHHHHHHHHhCCCCC--c---cCceEEEee
Q 002972 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPER--F---VGGAVELGF 217 (862)
Q Consensus 169 ~l~~LL~~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~--F---~~~~~~~~~ 217 (862)
.+..+|..+ ..-.++.|+|.+|+||||||.+++...... + ...++|++.
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~ 149 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDT 149 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEES
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEEC
Confidence 455666432 235699999999999999999998764321 1 346676665
No 111
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.96 E-value=0.022 Score=55.77 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+.|.|+|++|+||||+|+.++....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999987653
No 112
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.90 E-value=0.028 Score=55.96 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.++|.|+|++|+||||+|+.++...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999765
No 113
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.89 E-value=0.098 Score=55.98 Aligned_cols=49 Identities=12% Similarity=0.064 Sum_probs=33.1
Q ss_pred HHHHHHh----cCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCc-cCceEEEee
Q 002972 169 FLRKLLE----QEETHQVILIVGLSGIGKSCLARQVASDPPERF-VGGAVELGF 217 (862)
Q Consensus 169 ~l~~LL~----~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~ 217 (862)
.+..+|. ..=...++-|.|.+|+||||||.+++.....++ ...++|++.
T Consensus 13 ~LD~~LGg~~~GGl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~ 66 (333)
T 3io5_A 13 MMNIALSGEITGGMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS 66 (333)
T ss_dssp HHHHHHHSSTTCCBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred HHHHHhCCCCCCCCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 4566666 322234789999999999999999876554322 245666654
No 114
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.87 E-value=0.038 Score=55.46 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 178 ETHQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 178 ~~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
....+|+|+|.+|+|||||++.++...
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346799999999999999999998654
No 115
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.82 E-value=0.025 Score=54.57 Aligned_cols=25 Identities=40% Similarity=0.594 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+|+|+|++|+|||||++.++....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998653
No 116
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.81 E-value=0.078 Score=64.22 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
...+.++|++|+|||++|+.+++..
T Consensus 488 ~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 488 VGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHh
Confidence 3479999999999999999999876
No 117
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=93.80 E-value=0.3 Score=48.17 Aligned_cols=151 Identities=17% Similarity=0.250 Sum_probs=99.6
Q ss_pred cHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchHHHHHHHHhhhhHHHHHHhhcchhhHHHHHHHHHHHHHHhh-CCC--
Q 002972 668 PFDKLATLLSYDAKEWHENMFTILMSLAKVGKSKAVEKMFAFEIDKNLIKLLENGSEVVQHHAIVTLKAFYELA-GSP-- 744 (862)
Q Consensus 668 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-- 744 (862)
+...+..||...+++........+..++.... +....+...|.=..|+++|.++++-+|..|+.+ +.++. +.|
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~---L~~l~~~~~~~ 88 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWA---LSNIASGGNEQ 88 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH---HHHHTTSCHHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHH---HHHHhcCCcHH
Confidence 34457778888888887777777777764333 355667778888899999999987777777554 44444 222
Q ss_pred ccccccCCcccccccccccccceeEeecCCCCCCCCcccHHHHHHHHhcCCchhHHHHhhhhhhHHHhhCCchhHHHHhh
Q 002972 745 ANASLRPANLNLLPWQVRLRLERFIISDRTVPPSPKSQTFEDVIHRLLDGDNKQVQGATQDLIPFLEKAGGEPCIKKFLE 824 (862)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (862)
....+..|. +..++.-+-++|..-...|..-|--++. +.+..++.+++
T Consensus 89 ~~~i~~~g~------------------------------i~~L~~lL~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~ 136 (210)
T 4db6_A 89 IQAVIDAGA------------------------------LPALVQLLSSPNEQILQEALWALSNIAS--GGNEQIQAVID 136 (210)
T ss_dssp HHHHHHTTC------------------------------HHHHHHHTTCSCHHHHHHHHHHHHHHTT--SCHHHHHHHHH
T ss_pred HHHHHHCCC------------------------------HHHHHHHHcCCcHHHHHHHHHHHHHHHc--CCHHHHHHHHH
Confidence 111122222 3344443333433333344444433332 56677888999
Q ss_pred cCChHHHHHhhccCcchhhhhhhhhhHHHH
Q 002972 825 YDIIPELVKMMQCCVPEIQDSAYAAPDVLQ 854 (862)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 854 (862)
.|+++-|+.+++..-+++|..|..||.-+-
T Consensus 137 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 137 AGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 999999999999887889999999887764
No 118
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.68 E-value=0.11 Score=63.39 Aligned_cols=48 Identities=23% Similarity=0.313 Sum_probs=35.4
Q ss_pred CCCcCccHHHHHHHHHhc------------CCCceEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 159 QGYPISSKSKFLRKLLEQ------------EETHQVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 159 ~~~g~~~~~~~l~~LL~~------------~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
..+|.++..+.+..++.. -.....|.|+|.+|+||||||+.++.....
T Consensus 205 di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 205 DVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp GCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred HhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 345777766666666542 123567999999999999999999987653
No 119
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.67 E-value=0.67 Score=48.33 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.+++|+|..|+|||||.+.++--.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998765
No 120
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.65 E-value=0.025 Score=57.80 Aligned_cols=113 Identities=12% Similarity=-0.033 Sum_probs=61.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHhccccccCCCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDENS 259 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~lg~~~~~~~~~~ 259 (862)
-.++.|+|..|+||||++..++++...+- ..++.+....+. . ....+ +..+|.. .......
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g-~kVli~~~~~d~---------r-~~~~i-------~srlG~~-~~~~~~~ 72 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYAD-VKYLVFKPKIDT---------R-SIRNI-------QSRTGTS-LPSVEVE 72 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTT-CCEEEEEECCCG---------G-GCSSC-------CCCCCCS-SCCEEES
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcC-CEEEEEEeccCc---------h-HHHHH-------HHhcCCC-ccccccC
Confidence 46899999999999999999887764221 123333322110 0 00011 1111210 0000112
Q ss_pred CHHHHHHHHHHHhcCCCe-EEEEEcCCCc--hHHHHHhhccCCCceEEEEccchh
Q 002972 260 DLEYLCCLLQEALYGKSI-LILLDDVWEQ--DIVERFAKLYDNDCKYLVTTRNEA 311 (862)
Q Consensus 260 ~~~~l~~~l~~~L~~kr~-LLVLDDV~~~--~~~~~l~~~~~~gsrILvTTR~~~ 311 (862)
...++...+.+.+.+.++ +||+|.+... ++++.+....+.|..||+|-++.+
T Consensus 73 ~~~~i~~~i~~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 73 SAPEILNYIMSNSFNDETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKN 127 (223)
T ss_dssp STHHHHHHHHSTTSCTTCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBC
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEecccc
Confidence 334455555554544444 9999998643 455555443345889999998765
No 121
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.64 E-value=0.034 Score=54.45 Aligned_cols=26 Identities=15% Similarity=0.593 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.++++|+|++|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999987654
No 122
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.61 E-value=0.16 Score=54.33 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
...+|+|+|.+|+||||++..++...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence 367999999999999999999987654
No 123
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.59 E-value=0.24 Score=54.43 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-.+++|+|+.|+|||||.+.++--.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 4699999999999999999998654
No 124
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=93.59 E-value=0.26 Score=56.54 Aligned_cols=197 Identities=16% Similarity=0.155 Sum_probs=123.6
Q ss_pred cCchhHHHHhhcCCCCCcccccHHHHHHHhhhcCChhhHHHHhhhccHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchH
Q 002972 622 TGAVDKLAGLLQKSEDPMIQTDILTVLTKLAEFGTPETVDKVLQSIPFDKLATLLSYDAKEWHENMFTILMSLAKVGKSK 701 (862)
Q Consensus 622 ~~~l~~l~~~~~~~~~~~t~~~~~~~l~~l~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~ 701 (862)
.|.+..|-.++..+.++....+....|..++........... .--+..+..++...+++....+..++..++.. .-.
T Consensus 201 ~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~-~~~ 277 (528)
T 4b8j_A 201 NGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT--RPALPALARLIHSNDEEVLTDACWALSYLSDG-TND 277 (528)
T ss_dssp TTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHH--TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS-CHH
T ss_pred CCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHH--HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC-CHH
Confidence 456666766665566666667777777777654311111111 11223466678777777777777777777743 333
Q ss_pred HHHHHHHhhhhHHHHHHhhcchhhHHHHHHHHHHHHHHhhCCC--ccccccCCcccccccccccccceeEeecCCCCCCC
Q 002972 702 AVEKMFAFEIDKNLIKLLENGSEVVQHHAIVTLKAFYELAGSP--ANASLRPANLNLLPWQVRLRLERFIISDRTVPPSP 779 (862)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (862)
.+..+..+|.=..|+++|.++++-++..|+.+|..+.. +.+ .+..+..|.
T Consensus 278 ~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~--~~~~~~~~~~~~~~-------------------------- 329 (528)
T 4b8j_A 278 KIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVT--GDDAQTQCIIDHQA-------------------------- 329 (528)
T ss_dssp HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT--SCHHHHHHHHTTTH--------------------------
T ss_pred HHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHc--CCHHHHHHHHHhhh--------------------------
Confidence 55667778999999999999997777777555444432 112 111111221
Q ss_pred CcccHHHHHHHHhcC-CchhHHHHhhhhhhHHHhhCCchhHHHHhhcCChHHHHHhhccCcchhhhhhhhhhHHHHH
Q 002972 780 KSQTFEDVIHRLLDG-DNKQVQGATQDLIPFLEKAGGEPCIKKFLEYDIIPELVKMMQCCVPEIQDSAYAAPDVLQQ 855 (862)
Q Consensus 780 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 855 (862)
+..++.-+-++ +..-..+|..-|--++. |....+..+++.++++-|+.+++..-+++|..|..||.-+-.
T Consensus 330 ----l~~L~~lL~~~~~~~v~~~A~~~L~nl~~--~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~ 400 (528)
T 4b8j_A 330 ----LPCLLSLLTQNLKKSIKKEACWTISNITA--GNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATS 400 (528)
T ss_dssp ----HHHHHHHHHSCCCHHHHHHHHHHHHHHHT--SCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHcCCCcHHHHHHHHHHHHHHHC--CCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence 34444444444 33333445555555543 667788999999999999999999878899999998876644
No 125
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.59 E-value=0.038 Score=54.13 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+|.|.|++|+||||+|+.+++...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999988654
No 126
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.58 E-value=0.099 Score=64.20 Aligned_cols=45 Identities=18% Similarity=0.270 Sum_probs=32.2
Q ss_pred CCcCccHHHHHHHHHhcC--------CCceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 160 GYPISSKSKFLRKLLEQE--------ETHQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 160 ~~g~~~~~~~l~~LL~~~--------~~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.+|.++..+.+...+... .....+.|+|++|+|||++|+.+++..
T Consensus 560 viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 560 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp SCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 457666666655554321 123589999999999999999999865
No 127
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.57 E-value=0.12 Score=58.27 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=29.6
Q ss_pred HHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEE
Q 002972 169 FLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVE 214 (862)
Q Consensus 169 ~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 214 (862)
.+..+..-..+ ..++|+|.+|+|||||+..+......++...+++
T Consensus 141 ~ID~L~pi~kG-q~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~ 185 (473)
T 1sky_E 141 VVDLLAPYIKG-GKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVF 185 (473)
T ss_dssp HHHHHSCEETT-CEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEE
T ss_pred HHHHHhhhccC-CEEEEECCCCCCccHHHHHHHhhhhhccCcEEEE
Confidence 45555433322 3688999999999999999987655433333333
No 128
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.54 E-value=0.039 Score=54.94 Aligned_cols=27 Identities=41% Similarity=0.402 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
...+|+|+|++|+||||||+.++....
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999987653
No 129
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.51 E-value=0.044 Score=53.80 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..+|.|.|++|+||||+|+.++...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998754
No 130
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.50 E-value=0.13 Score=56.32 Aligned_cols=99 Identities=18% Similarity=0.165 Sum_probs=57.1
Q ss_pred HHHHHHHh-cC-CCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHH
Q 002972 168 KFLRKLLE-QE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFL 245 (862)
Q Consensus 168 ~~l~~LL~-~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l 245 (862)
..+..+|. .. ..-.++.|+|.+|+||||||.+++...... ...++|++... +.... .++.+
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~-gg~VlyId~E~---------s~~~~---ra~rl---- 109 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM-GGVAAFIDAEH---------ALDPV---YAKNL---- 109 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSC---------CCCHH---HHHHH----
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEeccc---------ccchH---HHHHc----
Confidence 45677776 32 235799999999999999999998754311 12355655421 11111 22222
Q ss_pred HHhccccc--cCCCCCCHHHHHHHHHHHhc-CCCeEEEEEcCCC
Q 002972 246 VQIGFWKK--IKDENSDLEYLCCLLQEALY-GKSILILLDDVWE 286 (862)
Q Consensus 246 ~~lg~~~~--~~~~~~~~~~l~~~l~~~L~-~kr~LLVLDDV~~ 286 (862)
+.... ......+.++....+...+. .+.-++|+|.+..
T Consensus 110 ---gv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 110 ---GVDLKSLLISQPDHGEQALEIVDELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp ---TCCGGGCEEECCSSHHHHHHHHHHHHHTSCCSEEEEECTTT
T ss_pred ---CCchhhhhhhhccCHHHHHHHHHHHhhhcCCCeEEehHhhh
Confidence 21100 11123466666666666554 4567899998754
No 131
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.45 E-value=0.19 Score=56.74 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=33.1
Q ss_pred HHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEee
Q 002972 169 FLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (862)
Q Consensus 169 ~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 217 (862)
.+..++.+-..-.++.|.|.+|+||||+|.+++..........++|+++
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 4566663333456999999999999999999987654222234555544
No 132
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.44 E-value=0.044 Score=60.49 Aligned_cols=109 Identities=14% Similarity=0.180 Sum_probs=60.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeee-eeeec-ccccCCCchHHHHHHHHHHHHHHHhccccccCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFG-QWCSR-AACNGSKSDYQKRLARKISKFLVQIGFWKKIKD 256 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~-~w~~~-~~~~~s~~~~~~~l~~~i~~~l~~lg~~~~~~~ 256 (862)
...+++|+|+.|+|||||++.+...........++.+.-. .|... ..+...+. ..+ .
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~---------------~~g------~ 193 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQR---------------EVG------E 193 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEE---------------EBT------T
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEee---------------ecC------C
Confidence 3568999999999999999999865432112233222210 00000 00000000 000 0
Q ss_pred CCCCHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHhhccCCCceEEEEccchh
Q 002972 257 ENSDLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLYDNDCKYLVTTRNEA 311 (862)
Q Consensus 257 ~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~~~~~l~~~~~~gsrILvTTR~~~ 311 (862)
.... ....++..+...+=+|++|.+.+.+.+..+......|..|+.|+...+
T Consensus 194 ~~~~---~~~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 194 DTKS---FADALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNT 245 (372)
T ss_dssp TBSC---SHHHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCS
T ss_pred CHHH---HHHHHHHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcch
Confidence 1111 234667777777889999999887766554443456777888887654
No 133
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.40 E-value=0.048 Score=57.87 Aligned_cols=47 Identities=26% Similarity=0.342 Sum_probs=33.5
Q ss_pred CCCcCccHHHHHHHHHhc-------------CCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 159 QGYPISSKSKFLRKLLEQ-------------EETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 159 ~~~g~~~~~~~l~~LL~~-------------~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..+|.++..+.+...+.. ......+.++|.+|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 345766666666555432 12345688999999999999999998764
No 134
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.39 E-value=0.054 Score=54.40 Aligned_cols=27 Identities=33% Similarity=0.576 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
..+|+|+|++|+|||||++.+......
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 468999999999999999999987653
No 135
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.37 E-value=0.82 Score=49.96 Aligned_cols=52 Identities=17% Similarity=0.157 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCCeEEEEEcCCCc---h----HHHHHhhcc-CCCceEEEEccchhhhhh
Q 002972 264 LCCLLQEALYGKSILILLDDVWEQ---D----IVERFAKLY-DNDCKYLVTTRNEAVYEI 315 (862)
Q Consensus 264 l~~~l~~~L~~kr~LLVLDDV~~~---~----~~~~l~~~~-~~gsrILvTTR~~~va~~ 315 (862)
..-.+...|..++=+|++|..-.. . .++.+.... ..|..||++|.+..++..
T Consensus 170 QRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~ 229 (366)
T 3tui_C 170 QRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKR 229 (366)
T ss_dssp HHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 344577778888889999987543 2 223333322 247889999998776653
No 136
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.35 E-value=0.39 Score=48.57 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..++|.|.|++|+||||.|+.++++.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999999864
No 137
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.33 E-value=0.16 Score=55.00 Aligned_cols=104 Identities=12% Similarity=0.096 Sum_probs=59.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHhccccccCCCCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDENSD 260 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~lg~~~~~~~~~~~ 260 (862)
.+++|+|..|+|||||++.+..-.... .+.+.++=.... ..... + ...+...+ .
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~--~g~i~i~~~~e~-------~~~~~-----~------~~i~~~~g------g 225 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKE--ERIISIEDTEEI-------VFKHH-----K------NYTQLFFG------G 225 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTT--SCEEEEESSCCC-------CCSSC-----S------SEEEEECB------T
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCC--CcEEEECCeecc-------ccccc-----h------hEEEEEeC------C
Confidence 489999999999999999999876532 334332210000 00000 0 00000000 1
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHhhccCCCc-eEEEEccchh
Q 002972 261 LEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLYDNDC-KYLVTTRNEA 311 (862)
Q Consensus 261 ~~~l~~~l~~~L~~kr~LLVLDDV~~~~~~~~l~~~~~~gs-rILvTTR~~~ 311 (862)
-......+...|..++=+|++|.+.+.+.++.+... ..|. .+|+||...+
T Consensus 226 g~~~r~~la~aL~~~p~ilildE~~~~e~~~~l~~~-~~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 226 NITSADCLKSCLRMRPDRIILGELRSSEAYDFYNVL-CSGHKGTLTTLHAGS 276 (330)
T ss_dssp TBCHHHHHHHHTTSCCSEEEECCCCSTHHHHHHHHH-HTTCCCEEEEEECSS
T ss_pred ChhHHHHHHHHhhhCCCEEEEcCCChHHHHHHHHHH-hcCCCEEEEEEcccH
Confidence 112344566777788889999999987777665543 3444 4777877654
No 138
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.33 E-value=0.041 Score=53.85 Aligned_cols=25 Identities=16% Similarity=0.493 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+|.|.|++|+||||+|+.++....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999987543
No 139
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.32 E-value=0.046 Score=52.94 Aligned_cols=25 Identities=40% Similarity=0.715 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..+|+|+|++|+||||+++.++...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998753
No 140
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.23 E-value=0.053 Score=53.66 Aligned_cols=25 Identities=36% Similarity=0.291 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
...+|+|+|+.|+||||+|+.++..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4679999999999999999999986
No 141
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.21 E-value=0.036 Score=54.88 Aligned_cols=28 Identities=39% Similarity=0.676 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCc
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPPERF 208 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~~~F 208 (862)
+.|.|+|++|+|||||++.+..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4588999999999999999987765444
No 142
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.20 E-value=0.23 Score=54.34 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|+.|+|||||.+.++--.+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 35899999999999999999986543
No 143
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.10 E-value=0.051 Score=53.24 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..+|+|.|++|+||||+|+.++...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998754
No 144
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.07 E-value=0.047 Score=54.38 Aligned_cols=26 Identities=31% Similarity=0.629 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
...+|+|+|+.|+|||||++.++...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 35699999999999999999998764
No 145
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.05 E-value=0.041 Score=53.64 Aligned_cols=25 Identities=36% Similarity=0.652 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.+.|.|+|++|+||||+|+.+++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999998764
No 146
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.04 E-value=0.048 Score=53.99 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.|+|.|+.|+||||+|+.+++...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998654
No 147
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.04 E-value=0.19 Score=54.54 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=27.4
Q ss_pred HHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 169 FLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 169 ~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+..++..-..-.++.|.|.+|+||||+|..++....
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3444554323356999999999999999999987643
No 148
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.03 E-value=0.051 Score=56.54 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
++|.|.|++|+||||||+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999987643
No 149
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.01 E-value=0.3 Score=53.35 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|+.|+|||||.+.++--.+
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCC
Confidence 35999999999999999999987543
No 150
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.01 E-value=0.054 Score=53.21 Aligned_cols=22 Identities=32% Similarity=0.677 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 002972 181 QVILIVGLSGIGKSCLARQVAS 202 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~ 202 (862)
.+++|+|+.|+|||||++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999986
No 151
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.96 E-value=0.094 Score=53.40 Aligned_cols=49 Identities=24% Similarity=0.185 Sum_probs=33.0
Q ss_pred HHHHHHhcC-CCceEEEEEcCCCCCHHHHHHHHHhCCCCC-----ccCceEEEee
Q 002972 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPER-----FVGGAVELGF 217 (862)
Q Consensus 169 ~l~~LL~~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~-----F~~~~~~~~~ 217 (862)
.+..++... ..-.+++|+|.+|+|||||+..++...... ...+++|++.
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 455566432 234699999999999999999998743211 1345666654
No 152
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.95 E-value=0.074 Score=56.43 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..+|.|.|++|+||||+|+.+....
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999998764
No 153
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.93 E-value=0.05 Score=54.01 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.+++|+|+.|+|||||++.++...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999998754
No 154
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.92 E-value=0.089 Score=55.89 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 178 ETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 178 ~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
....+|+|+|.+|+||||||+.+.....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3478999999999999999999876553
No 155
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.92 E-value=0.043 Score=53.23 Aligned_cols=23 Identities=48% Similarity=0.707 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.|.|.|++|+||||+|+.++...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998764
No 156
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.91 E-value=0.057 Score=53.67 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
...+|+|.|+.|+||||+|+.+++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999998764
No 157
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.88 E-value=0.037 Score=53.87 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=18.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..+|.|.|++|+||||+|+.++....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45899999999999999999987654
No 158
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.86 E-value=0.056 Score=53.65 Aligned_cols=25 Identities=32% Similarity=0.680 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..+|+|+|++|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998876
No 159
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.85 E-value=0.069 Score=53.33 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
...+|+|+|++|+||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35799999999999999999998864
No 160
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.84 E-value=0.26 Score=55.84 Aligned_cols=49 Identities=12% Similarity=0.249 Sum_probs=32.8
Q ss_pred HHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEee
Q 002972 169 FLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (862)
Q Consensus 169 ~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 217 (862)
.+..++..-..-.++.|.|.+|+||||||..++..........++|+++
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 4555554333456999999999999999999987654221224555544
No 161
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.83 E-value=0.055 Score=52.03 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..+|+|.|+.|+||||+|+.++....
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988643
No 162
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.80 E-value=0.1 Score=51.92 Aligned_cols=26 Identities=38% Similarity=0.409 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
...+|+|.|.+|+||||+++.+....
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998643
No 163
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.79 E-value=0.054 Score=53.88 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 002972 181 QVILIVGLSGIGKSCLARQVAS 202 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~ 202 (862)
.+|+|+|+.|+||||+++.++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999998
No 164
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.77 E-value=0.044 Score=53.59 Aligned_cols=24 Identities=38% Similarity=0.609 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.+|.|.|++|+||||+|+.++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999998764
No 165
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.76 E-value=0.046 Score=54.64 Aligned_cols=26 Identities=35% Similarity=0.612 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.++|+|+|++|+|||||++.+.....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 56899999999999999999988653
No 166
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.70 E-value=0.26 Score=56.51 Aligned_cols=48 Identities=17% Similarity=0.023 Sum_probs=32.6
Q ss_pred HHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEee
Q 002972 170 LRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (862)
Q Consensus 170 l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 217 (862)
+..++..-..-.++.|.|.+|+||||||.+++.....+....++|+++
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 344454323356899999999999999999987665432334555544
No 167
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.70 E-value=0.057 Score=53.24 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..+|+|.|++|+||||+|+.++...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998864
No 168
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.69 E-value=0.058 Score=52.92 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
...|+|+|+.|+||||+|+.++..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999986
No 169
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.68 E-value=0.058 Score=54.56 Aligned_cols=24 Identities=42% Similarity=0.523 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.+|+|+|++|+||||+|+.++...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998753
No 170
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.68 E-value=0.064 Score=52.38 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
...|+|.|++|+||||+|+.+++..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998754
No 171
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.67 E-value=0.066 Score=53.54 Aligned_cols=25 Identities=36% Similarity=0.348 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..+|+|+|..|+|||||++.++...
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998753
No 172
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.65 E-value=0.064 Score=53.45 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 002972 181 QVILIVGLSGIGKSCLARQVAS 202 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~ 202 (862)
.+|+|+|+.|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 173
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.63 E-value=0.05 Score=52.37 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
++|.|.|++|+||||+|+.++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998764
No 174
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.61 E-value=0.22 Score=53.51 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=27.1
Q ss_pred HHHHHHhcC-CCceEEEEEcCCCCCHHHHHHHHHhC
Q 002972 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 169 ~l~~LL~~~-~~~~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
.+..+|... ..-.++.|+|.+|+||||||.+++..
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 455666432 23579999999999999999999865
No 175
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.58 E-value=0.067 Score=52.30 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..+|+|.|++|+||||+|+.++...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998754
No 176
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.57 E-value=0.08 Score=54.69 Aligned_cols=23 Identities=48% Similarity=0.824 Sum_probs=21.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC
Q 002972 183 ILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 183 I~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
+.|+|++|+||||||+.++....
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998765
No 177
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.57 E-value=0.066 Score=53.29 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
.+|+|.|++|+||||+|+.+++....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 58999999999999999999986543
No 178
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.50 E-value=0.052 Score=53.37 Aligned_cols=25 Identities=40% Similarity=0.631 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
++++|+|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999987654
No 179
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.50 E-value=0.072 Score=52.90 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..+|.|.|++|+||||+|+.++...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998754
No 180
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.46 E-value=0.071 Score=52.23 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..+|.|.|++|+||||+++.++....
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999987654
No 181
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=92.43 E-value=1.9 Score=49.22 Aligned_cols=197 Identities=16% Similarity=0.143 Sum_probs=117.0
Q ss_pred CchhHHHHhhcCCCCCcccccHHHHHHHhhhcCChhhHHHHhhhccHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchHH
Q 002972 623 GAVDKLAGLLQKSEDPMIQTDILTVLTKLAEFGTPETVDKVLQSIPFDKLATLLSYDAKEWHENMFTILMSLAKVGKSKA 702 (862)
Q Consensus 623 ~~l~~l~~~~~~~~~~~t~~~~~~~l~~l~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~ 702 (862)
+.+..|..++. .+++....+....|..++.. ..+..+.+...--+..+..++...++.........+..++.- .-..
T Consensus 257 ~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~-~~~~ 333 (530)
T 1wa5_B 257 QALPTLAKLIY-SMDTETLVDACWAISYLSDG-PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG-NDLQ 333 (530)
T ss_dssp GGHHHHHHHTT-CCCHHHHHHHHHHHHHHHSS-CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-CHHH
T ss_pred hHHHHHHHHHc-CCCHHHHHHHHHHHHHHhCC-CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcC-CHHH
Confidence 44555555543 34454555566666666432 223333343333344566777766665555555555555532 2224
Q ss_pred HHHHHHhhhhHHHHHHhhcchhhHHHHHHHHHHHHHHhhCCCccccccCCcccccccccccccceeEeecCCCCCCCCcc
Q 002972 703 VEKMFAFEIDKNLIKLLENGSEVVQHHAIVTLKAFYELAGSPANASLRPANLNLLPWQVRLRLERFIISDRTVPPSPKSQ 782 (862)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (862)
...+...|+=..|+.+|.++..-++..|+.+|..+.. +.|. ++.. +.+..+
T Consensus 334 ~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~--~~~~-------------~~~~-------~~~~~~------- 384 (530)
T 1wa5_B 334 TQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA--GNTE-------------QIQA-------VIDANL------- 384 (530)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT--SCHH-------------HHHH-------HHHTTC-------
T ss_pred HHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHc--CCHH-------------HHHH-------HHHCCC-------
Confidence 5556667888899999999987777777665555433 1121 1110 111222
Q ss_pred cHHHHHHHHhcCCchhHHHHhhhhhhHHHhhCCc--hhHHHHhhcCChHHHHHhhccCcchhhhhhhhhhHHH
Q 002972 783 TFEDVIHRLLDGDNKQVQGATQDLIPFLEKAGGE--PCIKKFLEYDIIPELVKMMQCCVPEIQDSAYAAPDVL 853 (862)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 853 (862)
+..++.-+-+++..-...|+.-|.-++.. |+. .+++.+.+.++++-|+.++.+.-++++..|..||..+
T Consensus 385 -l~~L~~lL~~~~~~v~~~a~~aL~~l~~~-~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l 455 (530)
T 1wa5_B 385 -IPPLVKLLEVAEYKTKKEACWAISNASSG-GLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENI 455 (530)
T ss_dssp -HHHHHHHHHHSCHHHHHHHHHHHHHHHHH-TTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHhcCCHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 55555555555554445555555555543 444 6889999999999999999998888998888887654
No 182
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.41 E-value=0.07 Score=57.38 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=27.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeee
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFG 218 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~ 218 (862)
+.+||+|.|-||+||||.|..++.-.... -.++.-+|++
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~-GkkVllID~D 85 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSIL-GKRVLQIGCD 85 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEES
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHC-CCeEEEEecC
Confidence 57999999999999999888776554321 1235555654
No 183
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.35 E-value=0.074 Score=55.43 Aligned_cols=24 Identities=33% Similarity=0.659 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
..+|.|.|++|+||||+|+.++..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 184
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.30 E-value=0.069 Score=52.30 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
+|+|.|+.|+||||+|+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998864
No 185
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.30 E-value=0.11 Score=52.25 Aligned_cols=37 Identities=24% Similarity=0.291 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 168 KFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 168 ~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
+.+..++.. .....|+|+|.+|+|||||+..+.....
T Consensus 27 ~~~r~~~~~-~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 27 DKNRKLLNK-HGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHH-TTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHh-CCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 334444433 3467899999999999999999987643
No 186
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=92.29 E-value=0.63 Score=50.26 Aligned_cols=148 Identities=16% Similarity=0.100 Sum_probs=83.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCC-CCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHhccccccCC
Q 002972 178 ETHQVILIVGLSGIGKSCLARQVASDPP-ERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKD 256 (862)
Q Consensus 178 ~~~~vI~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~lg~~~~~~~ 256 (862)
.-.+++.++|..|.||++.|..+.+... ..|... ..+.+ ....
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~-~~~~~-----------~~~~------------------------ 59 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEH-HTFSI-----------DPNT------------------------ 59 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEE-EEEEC-----------CTTC------------------------
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCee-EEEEe-----------cCCC------------------------
Confidence 3467999999999999999999877543 123210 11111 1011
Q ss_pred CCCCHHHHHHHHHH-HhcCCCeEEEEEcCCC---chHHHHHhhcc---CCCceEEEEccc-------hhhhhhcc-c-cc
Q 002972 257 ENSDLEYLCCLLQE-ALYGKSILILLDDVWE---QDIVERFAKLY---DNDCKYLVTTRN-------EAVYEITE-A-EK 320 (862)
Q Consensus 257 ~~~~~~~l~~~l~~-~L~~kr~LLVLDDV~~---~~~~~~l~~~~---~~gsrILvTTR~-------~~va~~~~-~-~~ 320 (862)
+..++.+.+.. -+-+++-++|+|++.. .+.++.+...+ ++++.+|++|-. ..+..... . ..
T Consensus 60 ---~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~ 136 (343)
T 1jr3_D 60 ---DWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQ 136 (343)
T ss_dssp ---CHHHHHHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEE
T ss_pred ---CHHHHHHHhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceE
Confidence 22222222211 1345667889999865 35566666443 457776665532 12322211 1 11
Q ss_pred c---cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHHH
Q 002972 321 V---ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAV 367 (862)
Q Consensus 321 ~---~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~~ 367 (862)
+ +++..+....+.+.+...+...+ ++.+..|++.++|.+.++..
T Consensus 137 ~~~~~l~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 137 VTCQTPEQAQLPRWVAARAKQLNLELD---DAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp EEECCCCTTHHHHHHHHHHHHTTCEEC---HHHHHHHHHSSTTCHHHHHH
T ss_pred EEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhchHHHHHHH
Confidence 1 78888877777766654432222 36778889999998876654
No 187
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.29 E-value=0.068 Score=53.35 Aligned_cols=26 Identities=27% Similarity=0.680 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.++|+|+|++|+|||||++.+.....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 56899999999999999999987654
No 188
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.28 E-value=0.09 Score=52.68 Aligned_cols=42 Identities=14% Similarity=0.159 Sum_probs=31.9
Q ss_pred ccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 164 SSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 164 ~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..-...++.++..-+....+.|+|++|+||||+|..+++...
T Consensus 42 ~~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 42 ITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344566677776544345799999999999999999988754
No 189
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.28 E-value=0.073 Score=50.99 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.|+|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998854
No 190
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.19 E-value=1.1 Score=48.79 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|+.|+|||||.+.++--..
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 35999999999999999999986543
No 191
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=92.19 E-value=2.6 Score=47.99 Aligned_cols=201 Identities=18% Similarity=0.196 Sum_probs=120.2
Q ss_pred hhhhcCchhHHHHhhcCCCCCcccccHHHHHHHhhhcCChhhHHHHhhhccHHHHHhhcCcchhhhhHHHHHHHHHHHhh
Q 002972 618 SLETTGAVDKLAGLLQKSEDPMIQTDILTVLTKLAEFGTPETVDKVLQSIPFDKLATLLSYDAKEWHENMFTILMSLAKV 697 (862)
Q Consensus 618 ~l~~~~~l~~l~~~~~~~~~~~t~~~~~~~l~~l~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 697 (862)
.+...|.+..|..++...+++.........|..++. +..+....+...--+..+..++...+++.......++..++.-
T Consensus 112 ~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 190 (528)
T 4b8j_A 112 EVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIAS-GTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGD 190 (528)
T ss_dssp HHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHT-SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhC-CCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC
Confidence 344568888888887665546555556666666644 2233333333322334466778777777777777777777654
Q ss_pred cchHHHHHHHHhhhhHHHHHHh-hcchhhHHHHHHHHHHHHHHhhCCCccccccCCcccccccccccccceeEeecCCCC
Q 002972 698 GKSKAVEKMFAFEIDKNLIKLL-ENGSEVVQHHAIVTLKAFYELAGSPANASLRPANLNLLPWQVRLRLERFIISDRTVP 776 (862)
Q Consensus 698 g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 (862)
+.. ....+...|.=..|+++| .+.+.-++..|+-+|..++.-.. .......
T Consensus 191 ~~~-~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~-~~~~~~~-------------------------- 242 (528)
T 4b8j_A 191 SPK-CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP-QPSFEQT-------------------------- 242 (528)
T ss_dssp CHH-HHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSS-CCCHHHH--------------------------
T ss_pred Chh-hHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC-CCcHHHH--------------------------
Confidence 332 334455568888899999 55555566666666665554321 1100000
Q ss_pred CCCCcccHHHHHHHHhcCCchhHHHHhhhhhhHHHhhCCchhHHHHhhcCChHHHHHhhccCcchhhhhhhhhhHHH
Q 002972 777 PSPKSQTFEDVIHRLLDGDNKQVQGATQDLIPFLEKAGGEPCIKKFLEYDIIPELVKMMQCCVPEIQDSAYAAPDVL 853 (862)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 853 (862)
+..+..++.-+.+.|..-...|+.-|.-+. .|....+..+++.++|+-|+.+++-.-++++..|..||.-+
T Consensus 243 ----~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~--~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl 313 (528)
T 4b8j_A 243 ----RPALPALARLIHSNDEEVLTDACWALSYLS--DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI 313 (528)
T ss_dssp ----TTHHHHHHHHTTCCCHHHHHHHHHHHHHHT--SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHH--cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 122444554444444333333444444333 35566778899999999999999988788888888777543
No 192
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.13 E-value=0.22 Score=54.61 Aligned_cols=37 Identities=24% Similarity=0.181 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 168 KFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 168 ~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
+.|.-++.-. .-..++|+|.+|+|||||++.+++...
T Consensus 163 raID~~~pi~-rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 163 RVLDLASPIG-RGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp HHHHHHSCCB-TTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred eeeeeeeeec-CCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 3444444333 345899999999999999999887543
No 193
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.10 E-value=0.077 Score=52.06 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.++|+|..|+|||||++.++....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987653
No 194
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.07 E-value=0.1 Score=57.07 Aligned_cols=27 Identities=33% Similarity=0.431 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
...|.++|++|+|||++|+.+++....
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~~ 77 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLDV 77 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 457899999999999999999987743
No 195
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.02 E-value=0.075 Score=54.73 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..+|+|+|++|+|||||++.+++..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5699999999999999999999654
No 196
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.98 E-value=0.088 Score=52.33 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
...+|+|+|+.|+||||+|+.+.+.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3679999999999999999999875
No 197
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=91.97 E-value=0.44 Score=47.31 Aligned_cols=46 Identities=13% Similarity=0.010 Sum_probs=27.9
Q ss_pred HHHHHHhcC-CCeEEEEEcCCCc-----hHHHHHhh---ccCCCceEEEEccchh
Q 002972 266 CLLQEALYG-KSILILLDDVWEQ-----DIVERFAK---LYDNDCKYLVTTRNEA 311 (862)
Q Consensus 266 ~~l~~~L~~-kr~LLVLDDV~~~-----~~~~~l~~---~~~~gsrILvTTR~~~ 311 (862)
...++.+.+ +-=|||||++... -..+.+.. .-+.+..||+|+|...
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 445555544 4569999998432 12223332 2356779999999973
No 198
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=91.96 E-value=0.25 Score=54.19 Aligned_cols=98 Identities=14% Similarity=0.112 Sum_probs=55.6
Q ss_pred HHHHHHHh-cC-CCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHH
Q 002972 168 KFLRKLLE-QE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFL 245 (862)
Q Consensus 168 ~~l~~LL~-~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l 245 (862)
..+..+|. .+ ..-.++.|.|.+|+||||||.+++...... ...++|++... +.... ..
T Consensus 60 ~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~-g~~vlyi~~E~---------s~~~~---~a------- 119 (366)
T 1xp8_A 60 LSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKA-GGTCAFIDAEH---------ALDPV---YA------- 119 (366)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSC---------CCCHH---HH-------
T ss_pred HHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHC-CCeEEEEECCC---------ChhHH---HH-------
Confidence 35666665 21 235689999999999999999988654311 13466666532 21211 11
Q ss_pred HHhccccc--cCCCCCCHHHHHHHHHHHhcC-CCeEEEEEcCC
Q 002972 246 VQIGFWKK--IKDENSDLEYLCCLLQEALYG-KSILILLDDVW 285 (862)
Q Consensus 246 ~~lg~~~~--~~~~~~~~~~l~~~l~~~L~~-kr~LLVLDDV~ 285 (862)
..+|.... .-....+.+++...+....+. +--+||+|.+.
T Consensus 120 ~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 120 RALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECTT
T ss_pred HHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence 11221100 001223667777777666543 45689999874
No 199
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.94 E-value=0.13 Score=52.99 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 178 ETHQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 178 ~~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.....|+|.|++|+||||+|+.+.+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998754
No 200
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.93 E-value=0.086 Score=52.20 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
...|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999876
No 201
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.90 E-value=0.069 Score=53.22 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
++++|+|+.|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999997643
No 202
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.89 E-value=1.2 Score=48.52 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|+.|+|||||.+.++--.+
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCccHHHHHHHHHcCCC
Confidence 35999999999999999999987554
No 203
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.89 E-value=0.09 Score=52.49 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..+|+|.|+.|+||||+|+.+++...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999997654
No 204
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.87 E-value=0.082 Score=52.71 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..+|+|.|+.|+||||+|+.+++...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999987643
No 205
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.86 E-value=0.093 Score=54.33 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
...+|+|.|++|+||||+|+.+.....
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 367999999999999999999988654
No 206
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=91.76 E-value=2.4 Score=48.40 Aligned_cols=199 Identities=16% Similarity=0.151 Sum_probs=115.1
Q ss_pred cCchhHHHHhhcCCCCCcccccHHHHHHHhhhcCChhhHHHHhhhccHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchH
Q 002972 622 TGAVDKLAGLLQKSEDPMIQTDILTVLTKLAEFGTPETVDKVLQSIPFDKLATLLSYDAKEWHENMFTILMSLAKVGKSK 701 (862)
Q Consensus 622 ~~~l~~l~~~~~~~~~~~t~~~~~~~l~~l~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~ 701 (862)
.|.+..|..++.. .++.........+..+.. +.....+.++..-.+..+..+|...++........++..++. |...
T Consensus 298 ~~~v~~Lv~lL~~-~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~-~~~~ 374 (530)
T 1wa5_B 298 VRIPKRLVELLSH-ESTLVQTPALRAVGNIVT-GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA-GNTE 374 (530)
T ss_dssp TTCHHHHHHGGGC-SCHHHHHHHHHHHHHHTT-SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT-SCHH
T ss_pred cCcHHHHHHHHCC-CChhhHHHHHHHHHHHHc-CCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHc-CCHH
Confidence 4556666555543 333333333344444422 122222333322223346677777666666666666666665 2333
Q ss_pred HHHHHHHhhhhHHHHHHhhcchhhHHHHHHHHHHHHHHhhCCCccccccCCcccccc-cccccccceeEeecCCCCCCCC
Q 002972 702 AVEKMFAFEIDKNLIKLLENGSEVVQHHAIVTLKAFYELAGSPANASLRPANLNLLP-WQVRLRLERFIISDRTVPPSPK 780 (862)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 780 (862)
.+..+...|+=..|+.+|.+++.-+|..|+.+|..+..-|.+. | ....+ .+..+
T Consensus 375 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~-------------~~~~~~l-------~~~~~----- 429 (530)
T 1wa5_B 375 QIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQR-------------PDIIRYL-------VSQGC----- 429 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTC-------------THHHHHH-------HHTTC-----
T ss_pred HHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCc-------------HHHHHHH-------HHCCC-----
Confidence 5566777888889999999998888999988888888766531 1 00000 01112
Q ss_pred cccHHHHHHHHhcCCchhHHHHhhhhhhHHHhh---------CCchhHHHHhhcCChHHHHHhhccCcchhhhhhhhhhH
Q 002972 781 SQTFEDVIHRLLDGDNKQVQGATQDLIPFLEKA---------GGEPCIKKFLEYDIIPELVKMMQCCVPEIQDSAYAAPD 851 (862)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 851 (862)
+..++.-+-+.|..-+..|+..|.-+++.. +-+|+...|.+.|.++-|..+.+-..+++|+.|+.++.
T Consensus 430 ---l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~ 506 (530)
T 1wa5_B 430 ---IKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 506 (530)
T ss_dssp ---HHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444444443444333333444444444432 23688899999999999999877666778887776654
No 207
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.74 E-value=0.069 Score=55.41 Aligned_cols=26 Identities=35% Similarity=0.463 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..+|+|+|+.|+||||+++.++....
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46999999999999999999997654
No 208
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=91.68 E-value=0.64 Score=46.37 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
...+|+|+|++|+||+|.|..+.+.
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~ 34 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSR 34 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHH
Confidence 3579999999999999999998764
No 209
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.66 E-value=0.09 Score=52.62 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-.+++|+|+.|+|||||++.+..-.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4599999999999999999998755
No 210
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.64 E-value=0.079 Score=53.80 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
...|.|.|++|+||||+|+.++...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999765
No 211
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.58 E-value=0.096 Score=51.46 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998865
No 212
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.56 E-value=0.12 Score=53.59 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..+|.|+|++|+||||+|+.+.....
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 67899999999999999999988654
No 213
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=91.50 E-value=0.13 Score=53.33 Aligned_cols=46 Identities=15% Similarity=0.147 Sum_probs=30.9
Q ss_pred CCcCccHHHHHHHHHhc-CCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 160 GYPISSKSKFLRKLLEQ-EETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 160 ~~g~~~~~~~l~~LL~~-~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+|.+.....+...+.. ......|.|+|.+|+|||+||+.+++...
T Consensus 8 ~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp --CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 45666655555444332 12234677999999999999999998764
No 214
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.41 E-value=0.11 Score=50.46 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..+|+|.|+.|+||||+++.++...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 215
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.38 E-value=0.091 Score=52.74 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.|+|.|++|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 216
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.36 E-value=0.11 Score=55.73 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
...+|+|+|..|+|||||++.+..-.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 46799999999999999999998643
No 217
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.36 E-value=0.12 Score=53.29 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
...+|+|.|..|+|||||++.++...
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35699999999999999999998753
No 218
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.36 E-value=0.1 Score=52.30 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.|+|.|++|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998754
No 219
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.32 E-value=0.77 Score=53.80 Aligned_cols=26 Identities=38% Similarity=0.517 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|+.|+|||||.+.++--.+
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCChHHHHHHHHhcCCC
Confidence 46999999999999999999986543
No 220
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.30 E-value=0.12 Score=51.93 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q 002972 180 HQVILIVGLSGIGKSCLARQVAS 202 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~ 202 (862)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 221
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.28 E-value=1.2 Score=45.33 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..-++|.|++|+||||+|+.+++..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999998765
No 222
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.24 E-value=0.056 Score=54.06 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
++|+|.|..|+||||+|+.+....
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 378999999999999999998764
No 223
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.22 E-value=0.11 Score=52.54 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
...|.|.|++|+||||+|+.++...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998764
No 224
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=91.21 E-value=1.3 Score=48.84 Aligned_cols=197 Identities=16% Similarity=0.152 Sum_probs=113.0
Q ss_pred cCchhHHHHhhcCCCCCcccccHHHHHHHhhhcCChhhHHHHhhhccHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchH
Q 002972 622 TGAVDKLAGLLQKSEDPMIQTDILTVLTKLAEFGTPETVDKVLQSIPFDKLATLLSYDAKEWHENMFTILMSLAKVGKSK 701 (862)
Q Consensus 622 ~~~l~~l~~~~~~~~~~~t~~~~~~~l~~l~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~ 701 (862)
.|.+..|..++. .+++.........+..+.. +..+..+.+...-.+..+..++...++.........+..++. |.-+
T Consensus 233 ~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~-~~~~ 309 (450)
T 2jdq_A 233 AGVCRRLVELLM-HNDYKVVSPALRAVGNIVT-GDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITA-GNRA 309 (450)
T ss_dssp TTTHHHHHHHTT-CSCHHHHHHHHHHHHHHTT-SCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTT-SCHH
T ss_pred cCcHHHHHHHHC-CCchhHHHHHHHHHHHHhh-CChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHc-CCHH
Confidence 455666655554 3344444444555555533 222223333332233456677777766666666666666654 3444
Q ss_pred HHHHHHHhhhhHHHHHHhhcchhhHHHHHHHHHHHHHHhhCCCccc-cccCCcccccccccccccceeEeecCCCCCCCC
Q 002972 702 AVEKMFAFEIDKNLIKLLENGSEVVQHHAIVTLKAFYELAGSPANA-SLRPANLNLLPWQVRLRLERFIISDRTVPPSPK 780 (862)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (862)
.+..+...|+=..|+++|.++..-+|..|..+|..+..-+.|.... .+..|.
T Consensus 310 ~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~--------------------------- 362 (450)
T 2jdq_A 310 QIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGC--------------------------- 362 (450)
T ss_dssp HHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTC---------------------------
T ss_pred HHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCC---------------------------
Confidence 5666777788889999999998888888888887777654422111 111221
Q ss_pred cccHHHHHHHHhcCCchhHHHHhhhhhhHHHhh---------CCchhHHHHhhcCChHHHHHhhccCcchhhhhhhhhhH
Q 002972 781 SQTFEDVIHRLLDGDNKQVQGATQDLIPFLEKA---------GGEPCIKKFLEYDIIPELVKMMQCCVPEIQDSAYAAPD 851 (862)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 851 (862)
+..++.-+-+.|.+=...|+..|.-+++.. +-+||...|.+.|.++-|..+++-.-.+++..|+.++.
T Consensus 363 ---i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~ 439 (450)
T 2jdq_A 363 ---IKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIE 439 (450)
T ss_dssp ---HHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 333333333333332333444444444432 23688899999999999888766554567777666554
No 225
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.20 E-value=0.18 Score=55.04 Aligned_cols=36 Identities=25% Similarity=0.400 Sum_probs=27.8
Q ss_pred HHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 169 FLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 169 ~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.+..+........+|+|+|.+|+|||||+..++...
T Consensus 68 ~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 68 LLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 344444444567899999999999999999987654
No 226
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=91.18 E-value=0.098 Score=55.05 Aligned_cols=23 Identities=39% Similarity=0.683 Sum_probs=21.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC
Q 002972 183 ILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 183 I~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
+.|+|++|+||||||+.++....
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHHHHcC
Confidence 99999999999999999998654
No 227
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.15 E-value=0.099 Score=52.82 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
...|.|.|++|+||||+|+.++....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999988653
No 228
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.15 E-value=0.09 Score=53.23 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-.+++|+|+.|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998754
No 229
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.13 E-value=0.13 Score=54.42 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHh
Q 002972 179 THQVILIVGLSGIGKSCLARQVAS 202 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~ 202 (862)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999984
No 230
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=91.05 E-value=0.094 Score=58.99 Aligned_cols=97 Identities=10% Similarity=-0.031 Sum_probs=74.5
Q ss_pred CcccccccchhHhhhccCccccccccchhhhcCchhHHHHhhcCCCCCcccccHHHHHHHhhhcCChhhHHHHhhhccHH
Q 002972 591 DSQSLTVVSAEAITNIFSKGDYCSYIPSLETTGAVDKLAGLLQKSEDPMIQTDILTVLTKLAEFGTPETVDKVLQSIPFD 670 (862)
Q Consensus 591 r~L~l~~s~~~~i~~~~~~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~t~~~~~~~l~~l~e~~~~~~~~~~~~~~~~~ 670 (862)
.++++-.+..+....+..+++|.++.+...+ +..++..+.|.+||.|...+.++...|.++|++++|++++++
T Consensus 324 ~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~---~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~---- 396 (429)
T 3qwp_A 324 INIYQLKVLDCAMDACINLGLLEEALFYGTR---TMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRL---- 396 (429)
T ss_dssp TSHHHHHHHHHHHHHHHHHTCHHHHHHHHHH---HHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----
T ss_pred cchHHHHHHHHHHHHHHhhccHHHHHHHHHH---HHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHH----
Confidence 4444444555556667789999999999887 788888899999999999999999999999999999999888
Q ss_pred HHHhhcCcchhhhhHHHHHHHHHHH
Q 002972 671 KLATLLSYDAKEWHENMFTILMSLA 695 (862)
Q Consensus 671 ~~~~l~~~~~~~~~~~~~~~~~~l~ 695 (862)
....+....|+.|+.|..+...|.
T Consensus 397 -Al~i~~~~lG~~Hp~~~~~~~~l~ 420 (429)
T 3qwp_A 397 -AFDIMRVTHGREHSLIEDLILLLE 420 (429)
T ss_dssp -HHHHHHHHTCTTSHHHHHHHHHHH
T ss_pred -HHHHHHHhcCCCChHHHHHHHHHH
Confidence 444555555555555555544443
No 231
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.03 E-value=0.12 Score=50.24 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.++++|+|..|+|||||+..+....+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 56899999999999999999987654
No 232
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.01 E-value=0.13 Score=51.68 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..+|.|.|+.|+||||+|+.++...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998754
No 233
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=91.01 E-value=0.17 Score=55.69 Aligned_cols=27 Identities=30% Similarity=0.477 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
...+.++|++|+|||++|+.+++....
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~ 98 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDI 98 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 356889999999999999999987643
No 234
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.97 E-value=0.15 Score=51.10 Aligned_cols=38 Identities=21% Similarity=0.248 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 167 SKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 167 ~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+.+...+.. ....+|+|+|.+|+|||||+..+.....
T Consensus 18 ~~~~~~~~~~-~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 18 AEKNREALRE-SGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHH-HTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHhhcc-cCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3334444433 2568999999999999999999987643
No 235
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=90.91 E-value=0.1 Score=58.83 Aligned_cols=96 Identities=8% Similarity=-0.025 Sum_probs=74.2
Q ss_pred CcccccccchhHhhhccCccccccccchhhhcCchhHHHHhhcCCCCCcccccHHHHHHHhhhcCChhhHHHHhhhccHH
Q 002972 591 DSQSLTVVSAEAITNIFSKGDYCSYIPSLETTGAVDKLAGLLQKSEDPMIQTDILTVLTKLAEFGTPETVDKVLQSIPFD 670 (862)
Q Consensus 591 r~L~l~~s~~~~i~~~~~~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~t~~~~~~~l~~l~e~~~~~~~~~~~~~~~~~ 670 (862)
.++++-.+.-+....+..+++|.++.+.... ...++..+.|.+||.|...+.++...|..+|++++|+.++++..
T Consensus 335 ~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~---aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al-- 409 (433)
T 3qww_A 335 SNVYMLHMMYQAMGVCLYMQDWEGALKYGQK---IIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI-- 409 (433)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH---HHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--
T ss_pred hchHHHHHHHHHHHHHHhhcCHHHHHHHHHH---HHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH--
Confidence 4555555566666777889999999999888 68888889999999999999999999999999999999988843
Q ss_pred HHHhhcCcchhhhhHHHHHHHHHH
Q 002972 671 KLATLLSYDAKEWHENMFTILMSL 694 (862)
Q Consensus 671 ~~~~l~~~~~~~~~~~~~~~~~~l 694 (862)
..+....|+.|+.|..+...|
T Consensus 410 ---~i~~~~lG~~Hp~~~~l~~~l 430 (433)
T 3qww_A 410 ---AIMEVAHGKDHPYISEIKQEI 430 (433)
T ss_dssp ---HHHHHHTCTTCHHHHHHHHHH
T ss_pred ---HHHHHHcCCCChHHHHHHHHH
Confidence 344444555555555444333
No 236
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=90.86 E-value=0.43 Score=53.80 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 167 SKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 167 ~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
.+.|..++.-. .-.-++|.|.+|+|||+|+..+++....
T Consensus 141 ir~ID~l~pig-kGQr~~Ifgg~G~GKT~L~~~i~~~~~~ 179 (482)
T 2ck3_D 141 IKVVDLLAPYA-KGGKIGLFGGAGVGKTVLIMELINNVAK 179 (482)
T ss_dssp CHHHHHHSCEE-TTCEEEEEECTTSSHHHHHHHHHHHTTT
T ss_pred eEEEecccccc-cCCeeeeecCCCCChHHHHHHHHHhhHh
Confidence 45555555433 2357899999999999999999887643
No 237
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.84 E-value=0.13 Score=51.11 Aligned_cols=23 Identities=43% Similarity=0.551 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
+|+|.|+.|+||||+|+.++...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998754
No 238
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=90.83 E-value=0.9 Score=50.86 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
...+|.++|.+|+||||++..++...+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 368999999999999999999986554
No 239
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=90.81 E-value=0.68 Score=52.37 Aligned_cols=48 Identities=23% Similarity=0.245 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEe
Q 002972 168 KFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELG 216 (862)
Q Consensus 168 ~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~ 216 (862)
+.|..++.-. .-.-++|.|.+|+|||+|+..++++......+.+++.-
T Consensus 154 rvID~l~pig-kGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~ 201 (498)
T 1fx0_B 154 KVVNLLAPYR-RGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG 201 (498)
T ss_dssp TTHHHHSCCC-TTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEE
T ss_pred eEeeeecccc-cCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEE
Confidence 3444444332 23468999999999999999999876543334444443
No 240
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.78 E-value=0.14 Score=55.35 Aligned_cols=26 Identities=31% Similarity=0.622 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.++|.|+|+.|+||||||..++....
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 46999999999999999999998764
No 241
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.74 E-value=0.14 Score=49.05 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-.+++|+|..|.|||||.+.++.-.
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4699999999999999999998755
No 242
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.65 E-value=0.12 Score=52.69 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 002972 180 HQVILIVGLSGIGKSCLARQVA 201 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~ 201 (862)
-.+++|+|++|+|||||++.++
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 4699999999999999999887
No 243
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.65 E-value=0.13 Score=54.94 Aligned_cols=27 Identities=26% Similarity=0.517 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
...+++|+|++|+|||||++.++...+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 356999999999999999999986543
No 244
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=90.63 E-value=0.16 Score=54.78 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+.+|+|.|..|+||||||+.+.....
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 467999999999999999999976543
No 245
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.62 E-value=0.52 Score=52.67 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
...+++|+|.+|+||||++..++....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999987654
No 246
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=90.59 E-value=0.72 Score=51.76 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=28.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEee
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 217 (862)
.+++|.++|.+|+||||++..++.....+....+..++.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~ 137 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSA 137 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 468999999999999999999986654321233544444
No 247
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.51 E-value=0.13 Score=52.15 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|+.|+|||||.+.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46999999999999999999987654
No 248
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.50 E-value=0.13 Score=55.65 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+|+|.|++|+||||||..++....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998753
No 249
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.45 E-value=0.11 Score=53.82 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..|+|+|+.|+||||+++.++....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5899999999999999999998653
No 250
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=90.32 E-value=0.21 Score=53.30 Aligned_cols=45 Identities=24% Similarity=0.252 Sum_probs=32.6
Q ss_pred CCcCccHHHHHHHHHhc-CCCceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 160 GYPISSKSKFLRKLLEQ-EETHQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 160 ~~g~~~~~~~l~~LL~~-~~~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.+|.+..+..+...+.. ......|.|+|.+|+|||++|+.+++..
T Consensus 4 iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 4 MIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred cEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 45667666666655543 2233467799999999999999999854
No 251
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.24 E-value=0.17 Score=54.16 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.++|+|.|+.|+||||||..++....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 35899999999999999999998753
No 252
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=90.18 E-value=0.099 Score=63.00 Aligned_cols=47 Identities=6% Similarity=0.029 Sum_probs=32.4
Q ss_pred HHHhccCCcccEEEecccccccccChhhccccCCCcccccccchhHhh
Q 002972 557 LQALMASKSISELEVSRICFSGILGPRIADLISRDSQSLTVVSAEAIT 604 (862)
Q Consensus 557 ~~~l~~~~~LrvLdLs~~~i~~~LP~~I~~L~~Lr~L~l~~s~~~~i~ 604 (862)
+..|..+.+|++|||+++.|+. +|..|++|.+|++|+|....+..++
T Consensus 263 p~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~lp 309 (727)
T 4b8c_D 263 PAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVTTLP 309 (727)
T ss_dssp CGGGGGGTTCCEEECTTSCCSS-CCSSGGGGTTCSEEECCSSCCCCCC
T ss_pred ChhhhCCCCCCEEeCcCCcCCc-cChhhcCCCCCCEEECCCCCCCccC
Confidence 3345667777777777777776 7777777777777777765444443
No 253
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.16 E-value=1.7 Score=50.98 Aligned_cols=134 Identities=19% Similarity=0.232 Sum_probs=65.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEee-eeeeeccccc---CCCchHHHHH-------HHHHHHHHHHh
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF-GQWCSRAACN---GSKSDYQKRL-------ARKISKFLVQI 248 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~-~~w~~~~~~~---~s~~~~~~~l-------~~~i~~~l~~l 248 (862)
-.+++|+|+.|+|||||.+.++--.+.. .+.+++.. ..+++..... .+........ ...+.+.+..+
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~~p~--~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~ 459 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVEEPT--EGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPL 459 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCS--BSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc
Confidence 3589999999999999999999765421 01110000 0112111000 0111111111 01122334444
Q ss_pred ccccccCC---CCCCHHHHHHHHHHHhcCCCeEEEEEcCCCc---hH----HHHHhhcc-CCCceEEEEccchhhhhh
Q 002972 249 GFWKKIKD---ENSDLEYLCCLLQEALYGKSILILLDDVWEQ---DI----VERFAKLY-DNDCKYLVTTRNEAVYEI 315 (862)
Q Consensus 249 g~~~~~~~---~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~---~~----~~~l~~~~-~~gsrILvTTR~~~va~~ 315 (862)
+....... .-+.-+...-.+...|...+=+|+||.--.. .. ++.+.... ..|..||++|.+...+..
T Consensus 460 ~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~ 537 (607)
T 3bk7_A 460 GIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDY 537 (607)
T ss_dssp TCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred CCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 43211111 1112233334566777888889999987543 11 22332322 347788999988766553
No 254
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=90.12 E-value=0.28 Score=53.47 Aligned_cols=36 Identities=36% Similarity=0.368 Sum_probs=27.8
Q ss_pred HHHHHHhcC-CCceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 169 ~l~~LL~~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.+..+|..+ ..-.++.|+|.+|+|||||+..++...
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345555432 235799999999999999999998765
No 255
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=90.12 E-value=7.8 Score=42.50 Aligned_cols=197 Identities=17% Similarity=0.180 Sum_probs=112.3
Q ss_pred CchhHHHHhhcCCCCCcccccHHHHHHHhhhcCChhhHHHHhhhccHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchHH
Q 002972 623 GAVDKLAGLLQKSEDPMIQTDILTVLTKLAEFGTPETVDKVLQSIPFDKLATLLSYDAKEWHENMFTILMSLAKVGKSKA 702 (862)
Q Consensus 623 ~~l~~l~~~~~~~~~~~t~~~~~~~l~~l~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~ 702 (862)
|.+..|...+...+++.........+..+... ..+....+.+.--+..+..++...+++........+..++..... .
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~-~ 141 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASG-NSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM-C 141 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-H
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHH-H
Confidence 56777766666554665556666666666432 222223332222334466777777777777777777777665432 3
Q ss_pred HHHHHHhhhhHHHHHHhhc-chhhHHHHHHHHHHHHHHhhCCCccccccCCcccccccccccccceeEeecCCCCCCCCc
Q 002972 703 VEKMFAFEIDKNLIKLLEN-GSEVVQHHAIVTLKAFYELAGSPANASLRPANLNLLPWQVRLRLERFIISDRTVPPSPKS 781 (862)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (862)
...+...|+=..|+++|.+ .+.-++..|+.+|..++.-.+|.....+-.|
T Consensus 142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~----------------------------- 192 (450)
T 2jdq_A 142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSP----------------------------- 192 (450)
T ss_dssp HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGG-----------------------------
T ss_pred HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHH-----------------------------
Confidence 3445567888899999996 5555677776666655543321111111111
Q ss_pred ccHHHHHHHHhcCCchhHHHHhhhhhhHHHhhCCchhHHHHhhcCChHHHHHhhccCcchhhhhhhhhhHHH
Q 002972 782 QTFEDVIHRLLDGDNKQVQGATQDLIPFLEKAGGEPCIKKFLEYDIIPELVKMMQCCVPEIQDSAYAAPDVL 853 (862)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 853 (862)
.+..++..+.++|..-...|..-|.-+.+ +..+.++.+.+.++++-|+.++...-++++..|-.||..+
T Consensus 193 -~l~~L~~~l~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 193 -CLNVLSWLLFVSDTDVLADACWALSYLSD--GPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp -GHHHHHHHTTCCCHHHHHHHHHHHHHHTS--SSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHccCCHHHHHHHHHHHHHHHC--CCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 13333333333333222233333333322 2345677888999999999999876677888887777544
No 256
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.08 E-value=0.1 Score=53.07 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=16.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH-hCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVA-SDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~-~~~ 204 (862)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3589999999999999999998 543
No 257
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=90.06 E-value=0.15 Score=54.80 Aligned_cols=46 Identities=15% Similarity=0.015 Sum_probs=33.7
Q ss_pred CCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCC
Q 002972 159 QGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPER 207 (862)
Q Consensus 159 ~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~ 207 (862)
..+|.++..+.+...+... .-+.++|.+|+|||+||+.+++.....
T Consensus 28 ~i~g~~~~~~~l~~~l~~~---~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG---GHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT---CCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred ceeCcHHHHHHHHHHHHcC---CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 4557776666665555443 357899999999999999999876533
No 258
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=90.02 E-value=0.21 Score=56.52 Aligned_cols=49 Identities=18% Similarity=0.240 Sum_probs=34.2
Q ss_pred cCCCcCccHHHHHHHHHh---cC-CCceEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 158 EQGYPISSKSKFLRKLLE---QE-ETHQVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 158 ~~~~g~~~~~~~l~~LL~---~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
...+|.++..+.+..++. .. ...+-+.++|++|+|||+||+.+++....
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~ 89 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGS 89 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCT
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCC
Confidence 345577766555444432 22 23467889999999999999999987653
No 259
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.97 E-value=0.16 Score=50.92 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.|+|.|++|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998754
No 260
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.97 E-value=0.15 Score=54.75 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
++|.|+|+.|+||||||..++....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999998653
No 261
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.96 E-value=1.3 Score=51.09 Aligned_cols=25 Identities=40% Similarity=0.577 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+++|+|..|+|||||++.++--.+
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5899999999999999999997654
No 262
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.92 E-value=0.16 Score=51.09 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..|.|.|++|+||||+|+.++...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998765
No 263
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.91 E-value=0.17 Score=53.63 Aligned_cols=23 Identities=39% Similarity=0.666 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 002972 181 QVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 264
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.90 E-value=0.39 Score=57.98 Aligned_cols=49 Identities=22% Similarity=0.339 Sum_probs=34.7
Q ss_pred CCcCccHHHHHHHHHhcC------------CCceEEEEEcCCCCCHHHHHHHHHhCCCCCc
Q 002972 160 GYPISSKSKFLRKLLEQE------------ETHQVILIVGLSGIGKSCLARQVASDPPERF 208 (862)
Q Consensus 160 ~~g~~~~~~~l~~LL~~~------------~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F 208 (862)
..|.++..+.+.+.+.-. ...+-|.++|++|.|||.||+++++.....|
T Consensus 479 iggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f 539 (806)
T 3cf2_A 479 IGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp CCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEE
T ss_pred hCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCce
Confidence 346666666666554311 1245688999999999999999999876443
No 265
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.84 E-value=0.18 Score=53.86 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
...+|+|+|..|+|||||++.+....
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998754
No 266
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.84 E-value=0.17 Score=51.33 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.|.|.|++|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998754
No 267
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.81 E-value=0.17 Score=51.87 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..+|+|.|++|+||||+|+.++...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998764
No 268
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.76 E-value=0.098 Score=50.98 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
++++|+|..|+|||||++.+..-..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5899999999999999999986543
No 269
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=89.67 E-value=0.56 Score=52.59 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+.+|.++|.+|+||||++..++...+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 468999999999999999998886544
No 270
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=89.63 E-value=0.83 Score=48.52 Aligned_cols=37 Identities=27% Similarity=0.264 Sum_probs=26.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEee
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 217 (862)
..+++++|.+|+||||++..++...... ...+.+++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~-g~~v~l~~~ 134 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK-GFKVGLVGA 134 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT-TCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEec
Confidence 5799999999999999999998655321 123444444
No 271
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=89.58 E-value=0.19 Score=53.58 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..+++|+|+.|+||||+++.++...+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999987543
No 272
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=89.57 E-value=0.16 Score=54.01 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..+++|+|.+|+||||++..++....
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56999999999999999999986543
No 273
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=89.52 E-value=0.29 Score=53.52 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..+++|+|..|+||||+++.++...+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 57999999999999999999987543
No 274
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.51 E-value=0.19 Score=49.08 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.++++|+|..|+|||||+..+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998754
No 275
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.49 E-value=0.16 Score=50.35 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
+++|+|..|+|||||++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999998654
No 276
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.38 E-value=0.19 Score=51.29 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
...|.|.|++|+||||+|+.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998865
No 277
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.26 E-value=0.21 Score=49.71 Aligned_cols=26 Identities=35% Similarity=0.360 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-+.|.|.|.+|+||||||.+++.+..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 36789999999999999999998754
No 278
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=89.25 E-value=0.25 Score=56.57 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=33.2
Q ss_pred CCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 159 QGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 159 ~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..+|.++..+.+...+..+ .-|.|+|++|+|||+||+.+++...
T Consensus 23 ~ivGq~~~i~~l~~al~~~---~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG---ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT---CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhHHHHHHHHHHHHHHhcC---CeeEeecCchHHHHHHHHHHHHHHh
Confidence 4557776666665555443 3678999999999999999998764
No 279
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=89.22 E-value=0.21 Score=51.89 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeee
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFG 218 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~ 218 (862)
++|+|.|-||+||||+|..++.....+ ...+..+|++
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~-G~~VlliD~D 38 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM-GKTIMVVGCD 38 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEEEC
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC-CCcEEEEcCC
Confidence 578889999999999999998765432 2346666664
No 280
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.21 E-value=0.2 Score=56.21 Aligned_cols=26 Identities=38% Similarity=0.579 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
+.+|+|+|.+|+||||++..++....
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56999999999999999999987654
No 281
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=89.16 E-value=0.18 Score=53.73 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=29.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeee
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFG 218 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~ 218 (862)
..++|+|+|-||+||||+|..++...... ...+..+|++
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~-G~~VlliD~D 78 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSIL-GKRVLQIGCD 78 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEES
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 47899999999999999999888765422 2246666664
No 282
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.13 E-value=0.19 Score=53.60 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..++|.|.|+.|+||||||..++...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999999875
No 283
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.01 E-value=0.22 Score=51.39 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..++.+.|.||+||||++..++....
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999986543
No 284
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.00 E-value=0.21 Score=51.45 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+++|+|+.|+|||||.+.++--.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7999999999999999999987553
No 285
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.00 E-value=0.19 Score=56.19 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
...+|.|+|++|+||||+|+.++.+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 36799999999999999999998764
No 286
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.97 E-value=0.28 Score=51.85 Aligned_cols=27 Identities=37% Similarity=0.420 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.-.+++|.|.+|+|||||++.++....
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 346999999999999999999987543
No 287
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.97 E-value=0.25 Score=50.28 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=26.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEee
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 217 (862)
-.++.|.|.+|+||||||.+++...... ...++|++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~-~~~v~~~~~ 59 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM-GEPGIYVAL 59 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEES
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEc
Confidence 4689999999999999999887543211 234555543
No 288
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.86 E-value=0.18 Score=50.71 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 002972 181 QVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
.+++|+|..|+|||||.+.++--
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999865
No 289
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.86 E-value=0.13 Score=54.68 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=19.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
...+|+|.|..|+||||+|+.+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998753
No 290
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.86 E-value=0.24 Score=48.52 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.-.|+|+|.+|+|||||.+.+.....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC
Confidence 46789999999999999999987653
No 291
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=88.85 E-value=0.25 Score=53.38 Aligned_cols=28 Identities=32% Similarity=0.434 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 178 ETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 178 ~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
....+++|+|+.|+||||+++.++...+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3468999999999999999999986543
No 292
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.81 E-value=0.26 Score=46.08 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
+-|+|+|.+|+|||||...+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998764
No 293
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=88.76 E-value=0.2 Score=51.49 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|+|||||.+.++.-..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45999999999999999999987653
No 294
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=88.73 E-value=0.13 Score=59.92 Aligned_cols=37 Identities=22% Similarity=0.220 Sum_probs=20.8
Q ss_pred HhccCCcccEEEecccccccccChhhccccCCCcccccc
Q 002972 559 ALMASKSISELEVSRICFSGILGPRIADLISRDSQSLTV 597 (862)
Q Consensus 559 ~l~~~~~LrvLdLs~~~i~~~LP~~I~~L~~Lr~L~l~~ 597 (862)
.|..+..|++|+|+++.|++ +| .+++|.+|++|++..
T Consensus 481 ~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 481 ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred hhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 44555555555555555555 55 555555555555544
No 295
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.69 E-value=0.23 Score=49.80 Aligned_cols=23 Identities=26% Similarity=0.611 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
+|.|.|++|+||||.|+.++++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999864
No 296
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.68 E-value=0.27 Score=46.83 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 002972 181 QVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 297
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=88.67 E-value=0.26 Score=55.33 Aligned_cols=28 Identities=32% Similarity=0.546 Sum_probs=24.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPER 207 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~ 207 (862)
.+-|.++|++|+||||+|+.++......
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 4568899999999999999999877543
No 298
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.63 E-value=0.36 Score=53.16 Aligned_cols=26 Identities=23% Similarity=0.208 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhC
Q 002972 178 ETHQVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 178 ~~~~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
....+++|+|++|+|||||++.++..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34579999999999999999999974
No 299
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.53 E-value=0.21 Score=52.14 Aligned_cols=26 Identities=38% Similarity=0.423 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|+.|+|||||.+.++--.+
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46999999999999999999987554
No 300
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=88.52 E-value=0.37 Score=52.36 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
....|.|+|++|+||||+++.++....
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 456799999999999999999987654
No 301
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.49 E-value=0.21 Score=52.54 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|+.|+|||||.+.++--.+
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 35899999999999999999986543
No 302
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=88.49 E-value=0.34 Score=54.64 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=33.0
Q ss_pred HHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEee
Q 002972 169 FLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (862)
Q Consensus 169 ~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 217 (862)
.+..++.+-..-.++.|.|.+|+||||+|.+++.....+ ...++|+++
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSl 233 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSL 233 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECS
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEEC
Confidence 455566432335699999999999999999998765432 234555544
No 303
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=88.47 E-value=0.22 Score=53.78 Aligned_cols=46 Identities=22% Similarity=0.104 Sum_probs=29.7
Q ss_pred CCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 159 QGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 159 ~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..+|.+...+.+...... ....-+.|+|.+|+|||+||+.+++...
T Consensus 25 ~i~G~~~~~~~l~~~~~~-~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 25 AIVGQEDMKLALLLTAVD-PGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GSCSCHHHHHHHHHHHHC-GGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred hccChHHHHHHHHHHhhC-CCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 355666543333222221 1223488999999999999999998654
No 304
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.37 E-value=0.21 Score=48.52 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 002972 182 VILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
-|+|+|.+|+|||||...+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999874
No 305
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=88.32 E-value=0.27 Score=52.88 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=27.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEee
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 217 (862)
..++|+|+|.+|+||||++..++...... ...+..++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVllid~ 141 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLIAAA 141 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeC
Confidence 36799999999999999999998765422 234544443
No 306
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.30 E-value=0.26 Score=46.12 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-|+++|.+|+|||||...+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999998754
No 307
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=88.29 E-value=0.39 Score=54.56 Aligned_cols=26 Identities=35% Similarity=0.544 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..+++|+|.+|+|||||++.++...+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhh
Confidence 57999999999999999999987543
No 308
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=88.29 E-value=0.24 Score=51.04 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-.+++|+|..|+|||||.+.++--.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4699999999999999999998654
No 309
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.29 E-value=0.25 Score=51.17 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
-.+++|+|..|+|||||.+.++--
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 359999999999999999999975
No 310
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.23 E-value=0.22 Score=52.06 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|+.|+|||||++.++.-.+
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 46999999999999999999987543
No 311
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.19 E-value=0.28 Score=50.09 Aligned_cols=25 Identities=36% Similarity=0.364 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..+|+|.|+.|+||||+++.++...
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999998754
No 312
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=88.18 E-value=0.84 Score=50.07 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 166 KSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 166 ~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+.|..+..-. .-.-++|+|.+|+|||+|+..+++...
T Consensus 162 GiraID~l~Pig-rGQR~lIfg~~g~GKT~Ll~~Ia~~i~ 200 (427)
T 3l0o_A 162 STRLIDLFAPIG-KGQRGMIVAPPKAGKTTILKEIANGIA 200 (427)
T ss_dssp HHHHHHHHSCCB-TTCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred cchhhhhccccc-CCceEEEecCCCCChhHHHHHHHHHHh
Confidence 344555554433 234789999999999999999988643
No 313
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=88.12 E-value=0.29 Score=47.37 Aligned_cols=25 Identities=40% Similarity=0.644 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
....|+|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999875
No 314
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=88.06 E-value=0.22 Score=52.44 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=27.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeee
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFG 218 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~ 218 (862)
.++|+|.|-||+||||+|..++.....+ ...+..+|++
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~-G~rVlliD~D 39 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEM-GKKVMIVGCD 39 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEEEC
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHC-CCeEEEEecC
Confidence 3688889999999999999998765422 2246666664
No 315
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=88.06 E-value=0.16 Score=51.79 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
-.++.|.|.+|+|||++|.+++.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 469999999999999999998654
No 316
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.06 E-value=0.26 Score=48.48 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
...|+|+|.+|+|||||.+.+....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998764
No 317
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=88.04 E-value=0.24 Score=51.54 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|+.|+|||||.+.++--.+
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35999999999999999999986553
No 318
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=87.96 E-value=3 Score=48.53 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-..++|+|+.|.|||||++.+..-..
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CCEEEEECCCCChHHHHHHHHhcCCC
Confidence 46999999999999999999876554
No 319
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=87.93 E-value=0.26 Score=52.76 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
...+.|+|.+|+|||+||..+++...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 46788999999999999999998654
No 320
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=87.92 E-value=0.25 Score=51.13 Aligned_cols=26 Identities=42% Similarity=0.409 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|+|||||.+.++.-..
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35899999999999999999987654
No 321
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=87.80 E-value=0.45 Score=52.85 Aligned_cols=50 Identities=26% Similarity=0.181 Sum_probs=32.3
Q ss_pred HHHHHHHhcC-CCceEEEEEcCCCCCHHHHHHHHHhCCC-CC----ccCceEEEee
Q 002972 168 KFLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPP-ER----FVGGAVELGF 217 (862)
Q Consensus 168 ~~l~~LL~~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~-~~----F~~~~~~~~~ 217 (862)
..+..+|... ..-.++.|+|.+|+|||||+..++-... .. ...+++|++.
T Consensus 165 ~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 165 KNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred hhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 3456666432 2246999999999999999998763221 11 1245666654
No 322
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.74 E-value=0.29 Score=46.06 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.--|+|+|.+|+|||||...+....
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3458899999999999999998753
No 323
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=87.68 E-value=9 Score=40.35 Aligned_cols=148 Identities=14% Similarity=0.154 Sum_probs=92.5
Q ss_pred HHh-hcCcchhhhhHHHHHHHHHHHhhcchHHHHHHHHhhhhHHHHHHhhcc-hhhHHHHHHHHHHHHHHhhCCC-cccc
Q 002972 672 LAT-LLSYDAKEWHENMFTILMSLAKVGKSKAVEKMFAFEIDKNLIKLLENG-SEVVQHHAIVTLKAFYELAGSP-ANAS 748 (862)
Q Consensus 672 ~~~-l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~ 748 (862)
+.. +|...+++-.......+..++.-... .-..+...|.=..|+++|.+. +.-++.-|+-+|..+.. |.+| .+.+
T Consensus 86 Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~-~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~-~~~~~~~~~ 163 (296)
T 1xqr_A 86 LVGRYLEAGAAGLRWRAAQLIGTCSQNVAA-IQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR-EQEAGLLQF 163 (296)
T ss_dssp HHHTTTTCSSHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhCCHH-HHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-CCcHHHHHH
Confidence 555 77777776666666666666643322 223344568888999999975 54566666555555542 2222 2222
Q ss_pred ccCCcccccccccccccceeEeecCCCCCCCCcccHHHHHHHHhcCCchhHHHHhhhhhhHHHhhCCchhHHHHhhcCCh
Q 002972 749 LRPANLNLLPWQVRLRLERFIISDRTVPPSPKSQTFEDVIHRLLDGDNKQVQGATQDLIPFLEKAGGEPCIKKFLEYDII 828 (862)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (862)
...|. +..+++-+-.+|.+=..+|.--|--++. |....+..+.+.|+|
T Consensus 164 ~~~gg------------------------------i~~L~~lL~~~d~~v~~~A~~aLs~L~~--~~~~~~~~vv~~g~i 211 (296)
T 1xqr_A 164 LRLDG------------------------------FSVLMRAMQQQVQKLKVKSAFLLQNLLV--GHPEHKGTLCSMGMV 211 (296)
T ss_dssp HHTTH------------------------------HHHHHHHHHSSCHHHHHHHHHHHHHHHH--HCGGGHHHHHHTTHH
T ss_pred HHCCC------------------------------HHHHHHHHcCCCHHHHHHHHHHHHHHHh--CChHHHHHHHHcCCH
Confidence 22222 3444444444554444444444444432 456688999999999
Q ss_pred HHHHHhhccCcchhhhhhhhhhHHH
Q 002972 829 PELVKMMQCCVPEIQDSAYAAPDVL 853 (862)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~ 853 (862)
+-||.++.+.-+++|+.|-.||.-+
T Consensus 212 ~~Lv~LL~~~d~~v~~~al~aL~~l 236 (296)
T 1xqr_A 212 QQLVALVRTEHSPFHEHVLGALCSL 236 (296)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHH
Confidence 9999999999888999998888544
No 324
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=87.62 E-value=0.5 Score=49.27 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=29.0
Q ss_pred HHHHHHHHhcC-CCceEEEEEcCCCCCHHHHHHHHHhC
Q 002972 167 SKFLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 167 ~~~l~~LL~~~-~~~~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
...+..++... +...-+.++|++|.|||.+|..+++.
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 34466667664 33557999999999999999999985
No 325
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.57 E-value=0.43 Score=50.91 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45699999999999999999998654
No 326
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.54 E-value=0.27 Score=51.29 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|+|||||.+.++.-..
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 45999999999999999999987654
No 327
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=87.51 E-value=3.8 Score=46.84 Aligned_cols=176 Identities=16% Similarity=0.206 Sum_probs=98.1
Q ss_pred HHhhcCcchhhhhHHHHHHHHHHHhhcchHHHHHHHHhhhhHHHHHHhhcchhhHHHHHHHHHHHHHHhh-CCC--cccc
Q 002972 672 LATLLSYDAKEWHENMFTILMSLAKVGKSKAVEKMFAFEIDKNLIKLLENGSEVVQHHAIVTLKAFYELA-GSP--ANAS 748 (862)
Q Consensus 672 ~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~ 748 (862)
+..++...+++........+..++..... ....+..+|+-..|+++|.+.+.-+|..|+-+|. ++. +++ ....
T Consensus 256 L~~LL~~~~~~v~~~a~~aL~~l~~~~~~-~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~---nl~~~~~~~~~~i 331 (529)
T 3tpo_A 256 LVRLLHHNDPEVLADSCWAISYLTDGPNE-RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG---NIVTGTDEQTQKV 331 (529)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHSSCHH-HHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH---HHTTSCHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhhhhhhh-hHHHHHhccchHHHHHHhcCCChhHHHHHHHHHH---HHHccchHHHHHH
Confidence 56688888888877777777777764432 3444556799999999999999888887755444 443 223 2223
Q ss_pred ccCCcccccc-cccccc--cce---eEeecCCCCCCCC------cccHHHHHHHHhcCCchhHHHHhhhhhhHHHhhCCc
Q 002972 749 LRPANLNLLP-WQVRLR--LER---FIISDRTVPPSPK------SQTFEDVIHRLLDGDNKQVQGATQDLIPFLEKAGGE 816 (862)
Q Consensus 749 ~~~~~~~~~~-~~~~~~--~~~---~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (862)
+..|.+..|. ....-+ +-+ .+|++-....... ..-+..++.-+-+++.+-..+|..-|.-++ .||.
T Consensus 332 ~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~--~~~~ 409 (529)
T 3tpo_A 332 IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYT--SGGT 409 (529)
T ss_dssp HHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH--HHSC
T ss_pred hhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH--cCCC
Confidence 3355544332 110000 000 0000000000000 000233333333333333333333333332 3454
Q ss_pred h-hHHHHhhcCChHHHHHhhccCcchhhhhhhhhhHHH
Q 002972 817 P-CIKKFLEYDIIPELVKMMQCCVPEIQDSAYAAPDVL 853 (862)
Q Consensus 817 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 853 (862)
+ .++.+.+.|+|+-|++++.+.-++++..+-.||.-+
T Consensus 410 ~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~ni 447 (529)
T 3tpo_A 410 VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 447 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4 678889999999999999999888888877777554
No 328
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=87.48 E-value=0.32 Score=49.60 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
...|+|.|+.|+||||+++.+++....
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 568999999999999999999987653
No 329
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=87.47 E-value=0.35 Score=46.70 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999874
No 330
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=87.46 E-value=0.27 Score=51.59 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|+|||||.+.++.-.+
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46999999999999999999987654
No 331
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=87.44 E-value=0.98 Score=55.52 Aligned_cols=21 Identities=33% Similarity=0.322 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHH
Q 002972 180 HQVILIVGLSGIGKSCLARQV 200 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v 200 (862)
..+++|+|+.|.||||+.+.+
T Consensus 662 g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 479999999999999999998
No 332
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=87.40 E-value=0.31 Score=46.35 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.--|+|+|.+|+|||||...+....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 3468999999999999999998653
No 333
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=87.38 E-value=0.31 Score=47.27 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
--|+++|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998754
No 334
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.32 E-value=0.3 Score=49.97 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
...|+|.|..|+||||+++.+++...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999998764
No 335
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=87.31 E-value=1.5 Score=56.38 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-..++|+|..|+|||||++.+..-..
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred CcEEEEEecCCCcHHHHHHHhccccc
Confidence 46899999999999999999987654
No 336
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=87.21 E-value=0.33 Score=45.53 Aligned_cols=24 Identities=38% Similarity=0.628 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.-|+|+|.+|+|||||...+....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 458899999999999999998754
No 337
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=87.19 E-value=0.29 Score=51.23 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|+|||||.+.++--..
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 35999999999999999999987553
No 338
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=87.08 E-value=0.32 Score=48.48 Aligned_cols=28 Identities=21% Similarity=0.172 Sum_probs=24.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCc
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPPERF 208 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~~~F 208 (862)
.+|+|.|+.|+||||+|+.++....-.|
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~ 34 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPL 34 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCE
Confidence 5899999999999999999999876443
No 339
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=87.04 E-value=0.5 Score=54.03 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..++|+|+|.+|+||||++..++....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367999999999999999999986543
No 340
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=87.01 E-value=0.34 Score=51.49 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
...+++|+|.+|+||||++..++....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999987654
No 341
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=86.98 E-value=0.29 Score=51.53 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|+|||||.+.++--.+
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 35899999999999999999987654
No 342
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=86.93 E-value=0.26 Score=50.15 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
..+|+|.|..|+|||||++.++..
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 579999999999999999999875
No 343
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=86.84 E-value=0.34 Score=47.08 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
...|+|+|.+|+|||||...+....
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998764
No 344
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=86.82 E-value=0.25 Score=53.09 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=30.2
Q ss_pred HHHhccCCcccEEEecccccccccChhhccccCCCcccccc
Q 002972 557 LQALMASKSISELEVSRICFSGILGPRIADLISRDSQSLTV 597 (862)
Q Consensus 557 ~~~l~~~~~LrvLdLs~~~i~~~LP~~I~~L~~Lr~L~l~~ 597 (862)
+..+..+.+|++|+|+++.++. +|..+++|.+|++|++..
T Consensus 120 p~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 120 PDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRA 159 (328)
T ss_dssp CSCGGGGTTCSEEEEESCCCCC-CCGGGGGCTTCCEEEEEE
T ss_pred hHHHhccCCCCEEECCCCcccc-CcHHHhcCcCCCEEECCC
Confidence 3445677778888888888876 788888888888887766
No 345
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=86.71 E-value=0.36 Score=45.18 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-|+|+|.+|+|||||...+....
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999998654
No 346
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=86.71 E-value=0.36 Score=46.36 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..|+|+|.+|+|||||...+....
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998753
No 347
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=86.68 E-value=0.36 Score=45.60 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.--|+|+|.+|+|||||...+....
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468899999999999999998653
No 348
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.68 E-value=0.37 Score=45.38 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-|+|+|.+|+|||||...+....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998654
No 349
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=86.67 E-value=0.37 Score=45.31 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-|+|+|.+|+|||||...+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999998753
No 350
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=86.65 E-value=0.36 Score=45.60 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 002972 181 QVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
--|+|+|.+|+|||||...+...
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 35889999999999999999753
No 351
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=86.62 E-value=0.61 Score=50.57 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=23.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhC
Q 002972 177 EETHQVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 177 ~~~~~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
.....+|+|+|.+|+|||||+..++..
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 345789999999999999999999754
No 352
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=86.60 E-value=0.37 Score=45.44 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
--|+|+|.+|+|||||...+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358899999999999999998743
No 353
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=86.60 E-value=0.36 Score=53.42 Aligned_cols=24 Identities=46% Similarity=0.659 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
++|+|.|+.|+||||||..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 589999999999999999999764
No 354
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=86.59 E-value=7.4 Score=53.13 Aligned_cols=208 Identities=14% Similarity=0.165 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHHHhccccccCCCCCCHH
Q 002972 183 ILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDENSDLE 262 (862)
Q Consensus 183 I~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~~lg~~~~~~~~~~~~~ 262 (862)
|.++|++|+|||++|+.+.......-...+ ......+..
T Consensus 1270 vLL~GPpGtGKT~la~~~l~~~~~~~~~~i-----------------------------------------nfsa~ts~~ 1308 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMNNALRNSSLYDVVGI-----------------------------------------NFSKDTTTE 1308 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCSSCEEEEE-----------------------------------------ECCTTCCHH
T ss_pred EEEECCCCCCHHHHHHHHHhcCCCCceEEE-----------------------------------------EeecCCCHH
Q ss_pred HHHHHHHHHh---------------cCCCeEEEEEcCCCc--------hHHHHHhhccCCCc---------------eEE
Q 002972 263 YLCCLLQEAL---------------YGKSILILLDDVWEQ--------DIVERFAKLYDNDC---------------KYL 304 (862)
Q Consensus 263 ~l~~~l~~~L---------------~~kr~LLVLDDV~~~--------~~~~~l~~~~~~gs---------------rIL 304 (862)
.....+...+ .+|++++.+||++-+ ...+.+..++..|. .+|
T Consensus 1309 ~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lI 1388 (2695)
T 4akg_A 1309 HILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIV 1388 (2695)
T ss_dssp HHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEE
T ss_pred HHHHHHHHHhhhccccCCccccCCCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEE
Q ss_pred EEccch----------hhhhhcccccccCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhhhCCchHHHHHHhhhhhc
Q 002972 305 VTTRNE----------AVYEITEAEKVELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMGKALRK 374 (862)
Q Consensus 305 vTTR~~----------~va~~~~~~~~~L~~~ea~~Lf~~~~~~~~~~~~~~l~~~~~~Iv~~cgGLPLAI~~ig~~L~~ 374 (862)
.+|-.. .+...+..-.++...+++..-........-....++....+..|+..
T Consensus 1389 aA~Npp~~gGR~~l~~rllRrf~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~a----------------- 1451 (2695)
T 4akg_A 1389 GACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARA----------------- 1451 (2695)
T ss_dssp EEECCTTSTTCCCCCHHHHTTEEEEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHH-----------------
T ss_pred EecCCCccCCCccCChhhhheeeEEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH-----------------
Q ss_pred cCCHHHHHHHHHHhhhhhccCCCCCCccchhhhhcccccccchhhhhccCcHHHHHHHHHhcccCCCCCCChHHHHHHHH
Q 002972 375 ELRSEKWEKAITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDSRRLFIALAALSWAEPVPEACLEAIWS 454 (862)
Q Consensus 375 ~~~~~~W~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L~~~~k~cfl~lsiFp~~~~i~~~~L~~lW~ 454 (862)
+.+-|..+...+.. ....-..++..+|..-.+-++.+ .+....-....++++|.
T Consensus 1452 --ti~~y~~v~~~~~~---------------------~~k~HY~FnlRDLsrv~qGll~~---~~~~~~~~~~~l~rLw~ 1505 (2695)
T 4akg_A 1452 --SVHLYNECKARYST---------------------GLQSHYLFSPRELTRLVRGVYTA---INTGPRQTLRSLIRLWA 1505 (2695)
T ss_dssp --HHHHHHHHHHHSCT---------------------TTCTTCCCCHHHHHHHHHHHHHH---HHTSSCCCHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCC---------------------ccCCCcccCHHHHHHHHHHHHhc---CchhhhccHHHHHHHHH
Q ss_pred Hhh------------hcchHHHHHHHHHHCCC
Q 002972 455 ILV------------QKSLFSLAVCKLVEGSL 474 (862)
Q Consensus 455 a~g------------~~~~~e~~l~~L~~rsL 474 (862)
-|. +...+...+.+.+...|
T Consensus 1506 HE~~Rvf~DRLv~~~D~~~f~~~l~~~~~~~f 1537 (2695)
T 4akg_A 1506 YEAWRIFADRLVGVKEKNSFEQLLYETVDKYL 1537 (2695)
T ss_dssp HHHHHHHTTTCCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
No 355
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=86.57 E-value=0.26 Score=47.72 Aligned_cols=42 Identities=7% Similarity=0.016 Sum_probs=30.9
Q ss_pred HHhccCCcccEEEecccccccccChhh-ccccCCCcccccccch
Q 002972 558 QALMASKSISELEVSRICFSGILGPRI-ADLISRDSQSLTVVSA 600 (862)
Q Consensus 558 ~~l~~~~~LrvLdLs~~~i~~~LP~~I-~~L~~Lr~L~l~~s~~ 600 (862)
..|..+..|++|+|+++.|+. +|..+ ++|.+|++|++....+
T Consensus 51 ~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 51 GVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp TTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCC
T ss_pred HHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECCCCcc
Confidence 346777888888888888888 77764 7788888888766433
No 356
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=86.54 E-value=0.37 Score=45.39 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
--|+|+|.+|+|||||...+....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358899999999999999998764
No 357
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=86.50 E-value=0.37 Score=46.62 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.--|+|+|.+|+|||||...+.+..
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4468899999999999999998754
No 358
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=86.31 E-value=0.32 Score=45.78 Aligned_cols=22 Identities=41% Similarity=0.687 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 002972 182 VILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
-|+|+|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999999754
No 359
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=86.25 E-value=4.9 Score=45.75 Aligned_cols=225 Identities=16% Similarity=0.210 Sum_probs=118.2
Q ss_pred hhhhcCchhHHHHhhcCCCCCcc----cccHHHHHHHhhhcC----ChhhHHHHhhhccHHHHHhhcCcchhhhhHHHHH
Q 002972 618 SLETTGAVDKLAGLLQKSEDPMI----QTDILTVLTKLAEFG----TPETVDKVLQSIPFDKLATLLSYDAKEWHENMFT 689 (862)
Q Consensus 618 ~l~~~~~l~~l~~~~~~~~~~~t----~~~~~~~l~~l~e~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 689 (862)
.+...|.+..|..++...+.... +.+....+..++... ........+. -+..++...+++.......
T Consensus 180 ~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp-----~L~~LL~~~~~~v~~~A~~ 254 (510)
T 3ul1_B 180 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP-----TLVRLLHHNDPEVLADSCW 254 (510)
T ss_dssp HHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHH-----HHHHHTTCSCHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHH-----HHHHHHhcCCHHHHHHHHH
Confidence 33446777777777665433221 223333344443222 1122222322 2667888888887777777
Q ss_pred HHHHHHhhcchHHHHHHHHhhhhHHHHHHhhcchhhHHHHHHHHHHHHHHhhC-CC--ccccccCCcccccc-cccccc-
Q 002972 690 ILMSLAKVGKSKAVEKMFAFEIDKNLIKLLENGSEVVQHHAIVTLKAFYELAG-SP--ANASLRPANLNLLP-WQVRLR- 764 (862)
Q Consensus 690 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~-~~~~~~- 764 (862)
.+..|+..... ....+..+|+-..|+++|.+.+.-+|..|+-+|. .+.. ++ ....+..|.+..|. +...-+
T Consensus 255 aL~~L~~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~---nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~ 330 (510)
T 3ul1_B 255 AISYLTDGPNE-RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG---NIVTGTDEQTQKVIDAGALAVFPSLLTNPKT 330 (510)
T ss_dssp HHHHHTSSCHH-HHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH---HHTTSCHHHHHHHHHTTGGGGCC-CTTCSSH
T ss_pred HHHHHhhchhh-hHHHHHhcccchhhhhhhcCCChhhhhHHHHHHH---HhhcCCHHHHHHHhhccchHHHHHHhcCCCH
Confidence 77777654332 3344455799999999999999878877755444 4322 22 22233355544332 211000
Q ss_pred -cc---eeEeecCCCCCCCCc------ccHHHHHHHHhcCCchhHHHHhhhhhhHHHhhCCc-hhHHHHhhcCChHHHHH
Q 002972 765 -LE---RFIISDRTVPPSPKS------QTFEDVIHRLLDGDNKQVQGATQDLIPFLEKAGGE-PCIKKFLEYDIIPELVK 833 (862)
Q Consensus 765 -~~---~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 833 (862)
+- -.+|++-........ .-+..++.-+.++|.+-..+|..-|.-++ .||. ..++.+.+.|+++-|+.
T Consensus 331 ~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~--~~~~~~~~~~L~~~g~i~~L~~ 408 (510)
T 3ul1_B 331 NIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT--SGGTVEQIVYLVHCGIIEPLMN 408 (510)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH--HHCCHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHH--ccCCHHHHHHHHHCCCHHHHHH
Confidence 00 000111000000000 00333444444444433334433333333 3444 46778999999999999
Q ss_pred hhccCcchhhhhhhhhhHHH
Q 002972 834 MMQCCVPEIQDSAYAAPDVL 853 (862)
Q Consensus 834 ~~~~~~~~~~~~~~~~~~~~ 853 (862)
++.+.-++++..+-.||.-+
T Consensus 409 LL~~~d~~i~~~~L~aL~ni 428 (510)
T 3ul1_B 409 LLSAKDTKIIQVILDAISNI 428 (510)
T ss_dssp GGGCSCHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHH
Confidence 99998888888777776544
No 360
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=86.21 E-value=0.48 Score=45.15 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
....|+|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567899999999999999999864
No 361
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=86.14 E-value=0.4 Score=45.78 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
...-|+|+|.+|+|||||...+....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 34578999999999999999998754
No 362
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=86.10 E-value=0.28 Score=50.96 Aligned_cols=27 Identities=22% Similarity=0.112 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
....|+|.|..|+||||+|+.+++...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457999999999999999999988764
No 363
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=86.09 E-value=0.4 Score=46.65 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.--|+|+|.+|+|||||...+.+..
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4468899999999999998887654
No 364
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=86.09 E-value=6.6 Score=44.87 Aligned_cols=178 Identities=18% Similarity=0.168 Sum_probs=94.8
Q ss_pred HHhhcCcc-hhhhhHHHHHHHHHHHhhcchHHHHHHHHhhhhHHHHHHhhcchhhHHHHHHHHHHHHH-----------H
Q 002972 672 LATLLSYD-AKEWHENMFTILMSLAKVGKSKAVEKMFAFEIDKNLIKLLENGSEVVQHHAIVTLKAFY-----------E 739 (862)
Q Consensus 672 ~~~l~~~~-~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~ 739 (862)
+..+|... +++........+..++. |.......+...|+=..|+++|.+.+.-+|..|+-+|-.+. +
T Consensus 124 Lv~lL~~~~~~~~q~~Aa~aL~nia~-~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~ 202 (529)
T 3tpo_A 124 FVSFLGKTDCSPIQFESAWALTNIAS-GTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIK 202 (529)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHHT-SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 44455433 33333333333344332 34445566777899999999999999999999876554432 2
Q ss_pred hhCCC-ccccccCCcccccc-cccccccceeEeecCCCCCCCCcccHH---HHHHHHhcCCchhHHH-HhhhhhhHHHhh
Q 002972 740 LAGSP-ANASLRPANLNLLP-WQVRLRLERFIISDRTVPPSPKSQTFE---DVIHRLLDGDNKQVQG-ATQDLIPFLEKA 813 (862)
Q Consensus 740 ~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 813 (862)
.|+-| ....|......... ...|...--+.-..++..+.+.....+ ..+.++++.+..++.. |..-|.-+. .
T Consensus 203 ~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~--~ 280 (529)
T 3tpo_A 203 HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT--D 280 (529)
T ss_dssp TTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH--S
T ss_pred cCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhh--h
Confidence 23322 22333322221111 000100000111112222333222222 2344566666655544 333333333 2
Q ss_pred CCchhHHHHhhcCChHHHHHhhccCcchhhhhhhhhhHH
Q 002972 814 GGEPCIKKFLEYDIIPELVKMMQCCVPEIQDSAYAAPDV 852 (862)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (862)
+.+..+..+.+.|+++-||.++...-+++|..|-.|+.-
T Consensus 281 ~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~n 319 (529)
T 3tpo_A 281 GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 319 (529)
T ss_dssp SCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHH
Confidence 455677788899999999999998878888887777653
No 365
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=86.07 E-value=0.4 Score=45.71 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..-|+|+|.+|+|||||...+....
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4578999999999999999998763
No 366
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=86.00 E-value=3 Score=51.36 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q 002972 180 HQVILIVGLSGIGKSCLARQVAS 202 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~ 202 (862)
-.+++|+|..|+|||||.+.++.
T Consensus 461 Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999984
No 367
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=85.98 E-value=0.71 Score=50.00 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhC
Q 002972 178 ETHQVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 178 ~~~~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
....+++|+|.+|+|||||.+.+...
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 45679999999999999999999753
No 368
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=85.98 E-value=0.41 Score=45.09 Aligned_cols=24 Identities=46% Similarity=0.778 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
--|+|+|.+|+|||||...+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 458899999999999999998654
No 369
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=85.95 E-value=0.42 Score=46.30 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 002972 181 QVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
.+.+|+|..|+|||||+.+++.-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999999999754
No 370
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=85.94 E-value=0.42 Score=45.55 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..-|+|+|.+|+|||||...+....
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4468999999999999999998654
No 371
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=85.88 E-value=0.49 Score=55.55 Aligned_cols=45 Identities=24% Similarity=0.358 Sum_probs=35.0
Q ss_pred CCCcCccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 159 QGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 159 ~~~g~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
..+|.+.-.+.+...+..+ ..+.|+|++|+||||||+.++.....
T Consensus 42 ~i~G~~~~l~~l~~~i~~g---~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK---RHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT---CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred eEECchhhHhhccccccCC---CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 4557666666666666654 48899999999999999999987653
No 372
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=85.84 E-value=0.43 Score=44.88 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
--|+|+|.+|+|||||...+....
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 458899999999999999998653
No 373
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=85.76 E-value=0.31 Score=45.43 Aligned_cols=39 Identities=21% Similarity=0.066 Sum_probs=20.7
Q ss_pred hccCCcccEEEecccccccccChhhccccCCCccccccc
Q 002972 560 LMASKSISELEVSRICFSGILGPRIADLISRDSQSLTVV 598 (862)
Q Consensus 560 l~~~~~LrvLdLs~~~i~~~LP~~I~~L~~Lr~L~l~~s 598 (862)
+..+..|++|+|+++.++..+|..++++.+|++|++..+
T Consensus 60 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N 98 (149)
T 2je0_A 60 LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN 98 (149)
T ss_dssp CCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS
T ss_pred hhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC
Confidence 444555555555555555544444455555555555543
No 374
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=85.75 E-value=0.41 Score=46.20 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-|+|+|.+|+|||||...+....
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999998753
No 375
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=85.71 E-value=0.43 Score=46.45 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.--|+|+|.+|+|||||...+.+..
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCC
Confidence 3468899999999999999988654
No 376
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=85.70 E-value=0.44 Score=51.89 Aligned_cols=99 Identities=18% Similarity=0.140 Sum_probs=55.1
Q ss_pred HHHHHHHh-cC-CCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHH
Q 002972 168 KFLRKLLE-QE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFL 245 (862)
Q Consensus 168 ~~l~~LL~-~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l 245 (862)
..+..+|. .+ ..-+++.|+|.+|+||||||.+++...... ...++|++... +.... ..+
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~-g~~vlyi~~E~---------~~~~~---~a~------ 107 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA-GGIAAFIDAEH---------ALDPE---YAK------ 107 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSC---------CCCHH---HHH------
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCC---------CcCHH---HHH------
Confidence 34666666 32 235699999999999999999998644211 13466665531 11111 111
Q ss_pred HHhccccc--cCCCCCCHHHHHHHHHHHhc-CCCeEEEEEcCCC
Q 002972 246 VQIGFWKK--IKDENSDLEYLCCLLQEALY-GKSILILLDDVWE 286 (862)
Q Consensus 246 ~~lg~~~~--~~~~~~~~~~l~~~l~~~L~-~kr~LLVLDDV~~ 286 (862)
.+|.... .-....+.++....+..... .+.-+||+|.+..
T Consensus 108 -~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 108 -KLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp -HTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECGGG
T ss_pred -HcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCCEEEEcChHh
Confidence 1221100 00122356666666655554 3567999998743
No 377
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=85.67 E-value=0.6 Score=47.43 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=28.8
Q ss_pred ceEEEEE-cCCCCCHHHHHHHHHhCCCCCccCceEEEeee
Q 002972 180 HQVILIV-GLSGIGKSCLARQVASDPPERFVGGAVELGFG 218 (862)
Q Consensus 180 ~~vI~I~-G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~ 218 (862)
.++|+|+ +-||+||||+|..++..........+..+|+.
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 43 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDIS 43 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECC
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECC
Confidence 5788887 57999999999999887664423456666664
No 378
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=85.64 E-value=0.49 Score=46.00 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
....|+|+|.+|+|||||...+....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35678999999999999999998753
No 379
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=85.63 E-value=0.41 Score=50.12 Aligned_cols=22 Identities=41% Similarity=0.662 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 002972 182 VILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
.++|+|..|+|||||.+.++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 380
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=85.63 E-value=0.4 Score=51.45 Aligned_cols=26 Identities=31% Similarity=0.570 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..++++|+|+.|.|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 36799999999999999999999764
No 381
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=85.59 E-value=0.37 Score=48.27 Aligned_cols=24 Identities=38% Similarity=0.459 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.+|+|.|+.|+||||+|+.+....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999998764
No 382
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=85.59 E-value=0.43 Score=45.51 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.--|+|+|.+|+|||||...+.+..
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCc
Confidence 3468899999999999999998653
No 383
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=85.56 E-value=0.5 Score=47.01 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
....|.|+|.+|+|||||...+....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35678999999999999999998765
No 384
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=85.52 E-value=0.45 Score=45.25 Aligned_cols=25 Identities=36% Similarity=0.587 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..-|+|+|.+|+|||||...+....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4578999999999999999998754
No 385
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=85.50 E-value=0.44 Score=44.73 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 002972 183 ILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 183 I~I~G~gGiGKTtLA~~v~~~ 203 (862)
|+|+|.+|+|||||...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999754
No 386
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=85.46 E-value=0.39 Score=47.17 Aligned_cols=24 Identities=17% Similarity=0.057 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.++.|+|..|+||||++..++++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999997777654
No 387
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=85.45 E-value=0.17 Score=60.91 Aligned_cols=45 Identities=11% Similarity=0.138 Sum_probs=38.0
Q ss_pred hccCCcccEEEecccccccccChhhccccCCCcccccccchhHhhh
Q 002972 560 LMASKSISELEVSRICFSGILGPRIADLISRDSQSLTVVSAEAITN 605 (862)
Q Consensus 560 l~~~~~LrvLdLs~~~i~~~LP~~I~~L~~Lr~L~l~~s~~~~i~~ 605 (862)
+..+..|++|+|+++.|+. +|..|++|.+|++|+|....+..++.
T Consensus 243 ~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~~lp~ 287 (727)
T 4b8c_D 243 IFKYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLTSLPA 287 (727)
T ss_dssp GGGCCSCSCCBCTTSCCSC-CCGGGGGGTTCCEEECTTSCCSSCCS
T ss_pred hcCCCCCCEEEeeCCcCcc-cChhhhCCCCCCEEeCcCCcCCccCh
Confidence 4478999999999999998 99999999999999998865555443
No 388
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=85.44 E-value=0.46 Score=46.05 Aligned_cols=28 Identities=25% Similarity=0.216 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPER 207 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~~ 207 (862)
.--|+|+|.+|+|||||.+.+.......
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~~~ 41 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEG 41 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhcccc
Confidence 3468899999999999998777655433
No 389
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=85.43 E-value=0.43 Score=48.51 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.|.+.|.||+||||+|..++....
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3477899999999999999887654
No 390
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=85.43 E-value=0.45 Score=45.78 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
--|+|+|.+|+|||||...+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 358899999999999999998754
No 391
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=85.42 E-value=0.45 Score=46.08 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
...|+|+|.+|+|||||...+....
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 4578899999999999999998764
No 392
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=85.42 E-value=0.46 Score=45.67 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.--|+|+|.+|+|||||...+.+..
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4568899999999999999998763
No 393
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=85.38 E-value=0.47 Score=44.83 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..-|+|+|.+|+|||||...+....
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568899999999999999997654
No 394
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=85.34 E-value=0.39 Score=48.87 Aligned_cols=35 Identities=14% Similarity=0.199 Sum_probs=26.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeee
Q 002972 183 ILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFG 218 (862)
Q Consensus 183 I~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~ 218 (862)
|+|.|-||+||||+|..++.....+ ..++..+|+.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D 37 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASD-YDKIYAVDGD 37 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTT-CSCEEEEEEC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 6679999999999999998876543 2346666654
No 395
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=85.33 E-value=0.46 Score=46.43 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
...|+|+|.+|+|||||...+.+..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~ 47 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDR 47 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998753
No 396
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=85.28 E-value=0.39 Score=45.83 Aligned_cols=25 Identities=40% Similarity=0.557 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..-|+|+|.+|+|||||...+....
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568999999999999999998653
No 397
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=85.27 E-value=0.48 Score=54.54 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
...+|.++|++|.||||+|+.+++...
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 357899999999999999999987653
No 398
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=85.21 E-value=0.47 Score=45.10 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
--|+|+|.+|+|||||...+....
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 458899999999999999998653
No 399
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=85.17 E-value=0.47 Score=45.64 Aligned_cols=25 Identities=36% Similarity=0.597 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.--|+|+|.+|+|||||...+.+..
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568899999999999999998654
No 400
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=85.07 E-value=0.41 Score=55.43 Aligned_cols=48 Identities=17% Similarity=0.308 Sum_probs=32.6
Q ss_pred CCCcCccHHHHHHHHHh-----cCCCceEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 159 QGYPISSKSKFLRKLLE-----QEETHQVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 159 ~~~g~~~~~~~l~~LL~-----~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
..+|.++-.+.+...+. .......+.++|++|+||||||+.++.....
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 34566655444433221 1223568999999999999999999987643
No 401
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=85.06 E-value=0.48 Score=45.69 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.--|+|+|.+|+|||||...+....
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999998754
No 402
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=85.05 E-value=0.41 Score=50.72 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|+|||||.+.++.-..
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 46999999999999999999987654
No 403
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=85.00 E-value=0.49 Score=45.38 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
--|+|+|.+|+|||||...+.+..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 358899999999999999998643
No 404
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=84.96 E-value=0.49 Score=45.33 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..-|+|+|.+|+|||||...+....
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 4568899999999999999998654
No 405
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=84.90 E-value=0.3 Score=52.20 Aligned_cols=26 Identities=35% Similarity=0.368 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|..|+|||||++.++.-..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCchHHHHHHHHHcCCC
Confidence 46999999999999999999987543
No 406
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=84.88 E-value=0.5 Score=45.19 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
--|+|+|.+|+|||||...+....
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999998653
No 407
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=84.87 E-value=0.5 Score=45.30 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..-|+|+|.+|+|||||...+.+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4578899999999999999998543
No 408
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=84.87 E-value=0.37 Score=46.07 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
--|+|+|.+|+|||||...+.+..
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 458899999999999999998754
No 409
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=84.77 E-value=0.5 Score=45.92 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.--|+|+|.+|+|||||...+....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4568999999999999999998754
No 410
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=84.66 E-value=0.51 Score=45.10 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..-|+|+|.+|+|||||...+....
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468899999999999999998754
No 411
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=84.66 E-value=0.68 Score=45.52 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
..-|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999999754
No 412
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=84.60 E-value=0.55 Score=45.97 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..-|+|+|.+|+|||||...+.+...
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 44688999999999999998877543
No 413
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.55 E-value=0.52 Score=46.07 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.--|+|+|.+|+|||||...+....
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468899999999999999998753
No 414
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=84.54 E-value=0.52 Score=46.18 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..-|+|+|.+|+|||||...+....
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC
Confidence 4578999999999999999998654
No 415
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=84.49 E-value=0.16 Score=50.20 Aligned_cols=40 Identities=15% Similarity=0.076 Sum_probs=29.6
Q ss_pred HhccCCcccEEEecccccccccChhhccccCCCcccccccch
Q 002972 559 ALMASKSISELEVSRICFSGILGPRIADLISRDSQSLTVVSA 600 (862)
Q Consensus 559 ~l~~~~~LrvLdLs~~~i~~~LP~~I~~L~~Lr~L~l~~s~~ 600 (862)
.+..+.+|++|+|+++.++. +| .++++.+|++|++..+..
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l 82 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLI 82 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEE
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCc
Confidence 55667777888888877777 77 777777888777766533
No 416
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=84.49 E-value=0.44 Score=51.29 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=28.6
Q ss_pred HHhcCCC-ceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEee
Q 002972 173 LLEQEET-HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (862)
Q Consensus 173 LL~~~~~-~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 217 (862)
++....+ ..++...|-||+||||+|..++...... ..++..+|.
T Consensus 6 ~l~~~~gm~~i~v~sgKGGvGKTTvA~~LA~~lA~~-G~rVLlvD~ 50 (324)
T 3zq6_A 6 LFKFNKGKTTFVFIGGKGGVGKTTISAATALWMARS-GKKTLVIST 50 (324)
T ss_dssp GCCCBTTBCEEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEEC
T ss_pred hhcCCCCCeEEEEEeCCCCchHHHHHHHHHHHHHHC-CCcEEEEeC
Confidence 3444444 4677777999999999999988655422 223544444
No 417
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=84.48 E-value=0.68 Score=50.63 Aligned_cols=27 Identities=30% Similarity=0.570 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
-.+++|+|..|+|||||++.+......
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 358999999999999999999987653
No 418
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=84.43 E-value=0.46 Score=52.02 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
...++|+|..|+|||||++.++....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987654
No 419
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=84.36 E-value=4.2 Score=41.31 Aligned_cols=38 Identities=24% Similarity=0.189 Sum_probs=27.6
Q ss_pred CccHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 163 ISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 163 ~~~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
+.-..+.+..++... -+.|+|..|.|||.+|..++...
T Consensus 95 ~~~Q~~ai~~~~~~~----~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 95 RDYQEKALERWLVDK----RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CHHHHHHHHHHTTTS----EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhCC----CEEEEeCCCCCHHHHHHHHHHHc
Confidence 344555566666542 27789999999999999888765
No 420
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.35 E-value=0.55 Score=44.82 Aligned_cols=25 Identities=32% Similarity=0.630 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.--|+|+|.+|+|||||...+....
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4468999999999999999998654
No 421
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=84.31 E-value=0.53 Score=46.19 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..-|+|+|.+|+|||||...+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4578999999999999999998764
No 422
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=84.23 E-value=0.54 Score=45.62 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.--|+|+|.+|+|||||...+....
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3458899999999999999998764
No 423
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=84.19 E-value=2.2 Score=52.26 Aligned_cols=22 Identities=41% Similarity=0.520 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 002972 180 HQVILIVGLSGIGKSCLARQVA 201 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~ 201 (862)
..+++|+|+.|.|||||.+.++
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHH
Confidence 4699999999999999999875
No 424
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=84.15 E-value=0.64 Score=53.20 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=31.5
Q ss_pred CcCccHHHHHHHHHhc-CCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 161 YPISSKSKFLRKLLEQ-EETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 161 ~g~~~~~~~l~~LL~~-~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
+-+.+-.+.+...... .....+|.+.|++|+||||+|+.++....
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 3344444555554421 12347899999999999999999998765
No 425
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=84.10 E-value=0.53 Score=51.81 Aligned_cols=26 Identities=38% Similarity=0.529 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|+.|+|||||.+.++--.+
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 35899999999999999999986543
No 426
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=84.06 E-value=0.55 Score=46.60 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..-|+|+|.+|+|||||...+....
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999998764
No 427
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=84.05 E-value=0.47 Score=45.59 Aligned_cols=40 Identities=13% Similarity=0.089 Sum_probs=27.0
Q ss_pred HhccCCcccEEEecccccccccChh-hccccCCCcccccccc
Q 002972 559 ALMASKSISELEVSRICFSGILGPR-IADLISRDSQSLTVVS 599 (862)
Q Consensus 559 ~l~~~~~LrvLdLs~~~i~~~LP~~-I~~L~~Lr~L~l~~s~ 599 (862)
.|..+..|++|+|+++.|+. +|.. +++|.+|++|++....
T Consensus 49 ~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 49 VFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred hhcCcccCCEEECCCCCcCc-cChhhccCCCCCCEEECCCCc
Confidence 45667777777777777777 6654 3677777777776543
No 428
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=84.00 E-value=1.5 Score=49.16 Aligned_cols=40 Identities=20% Similarity=0.138 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 166 KSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 166 ~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
-.+.|..++.-..+ .-++|.|.+|+|||+|+..+++....
T Consensus 138 GiraID~l~pigrG-Qr~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 138 GISAIDHLNTLVRG-QKLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp SCHHHHTTSCCBTT-CBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred CceEEecccccccC-CEEEEeCCCCcChHHHHHHHHHHHHh
Confidence 34455555544333 34789999999999999999987643
No 429
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=83.95 E-value=0.64 Score=44.79 Aligned_cols=26 Identities=19% Similarity=0.478 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
...-|+|+|.+|+|||||...+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 35678999999999999999998654
No 430
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=83.95 E-value=0.56 Score=45.69 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.--|+|+|.+|+|||||...+....
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998754
No 431
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=83.92 E-value=0.44 Score=46.82 Aligned_cols=22 Identities=41% Similarity=0.589 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 002972 180 HQVILIVGLSGIGKSCLARQVA 201 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~ 201 (862)
..-|+|+|.+|+|||||...+.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999985
No 432
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=83.91 E-value=0.58 Score=45.90 Aligned_cols=25 Identities=36% Similarity=0.483 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..-|+|+|.+|+|||||...+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998754
No 433
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=83.90 E-value=0.57 Score=46.02 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..-|+|+|.+|+|||||...+....
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 4578999999999999999998764
No 434
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=83.88 E-value=0.55 Score=45.99 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q 002972 180 HQVILIVGLSGIGKSCLARQVAS 202 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~ 202 (862)
.--|+|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34688999999999999999874
No 435
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=83.87 E-value=0.59 Score=45.39 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
+-|.|.|.+|+||||||.++..+-
T Consensus 17 ~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 568899999999999999998853
No 436
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=83.84 E-value=0.57 Score=46.41 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
...|+|+|.+|+|||||...+....
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578899999999999999998754
No 437
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=83.83 E-value=0.32 Score=48.13 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
...|+|+|.+|+|||||.+.+....
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999987654
No 438
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=83.83 E-value=0.36 Score=46.50 Aligned_cols=42 Identities=17% Similarity=0.089 Sum_probs=31.7
Q ss_pred HhccCCcccEEEecccccccccChhh-ccccCCCcccccccchh
Q 002972 559 ALMASKSISELEVSRICFSGILGPRI-ADLISRDSQSLTVVSAE 601 (862)
Q Consensus 559 ~l~~~~~LrvLdLs~~~i~~~LP~~I-~~L~~Lr~L~l~~s~~~ 601 (862)
.|..+..|++|+|+++.|+. +|..+ +.+.+|++|++....+.
T Consensus 59 ~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~ 101 (176)
T 1a9n_A 59 GFPLLRRLKTLLVNNNRICR-IGEGLDQALPDLTELILTNNSLV 101 (176)
T ss_dssp CCCCCSSCCEEECCSSCCCE-ECSCHHHHCTTCCEEECCSCCCC
T ss_pred ccccCCCCCEEECCCCcccc-cCcchhhcCCCCCEEECCCCcCC
Confidence 45677788888888888888 77665 88888888888765443
No 439
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=83.79 E-value=0.55 Score=51.34 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|+.|+|||||.+.++--.+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCC
Confidence 45999999999999999999987543
No 440
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=83.77 E-value=0.58 Score=46.32 Aligned_cols=25 Identities=32% Similarity=0.690 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..-|+|+|.+|+|||||...+....
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4568899999999999999998653
No 441
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=83.75 E-value=0.59 Score=45.27 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..-|+|+|.+|+|||||...+....
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4578999999999999999998754
No 442
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=83.71 E-value=0.62 Score=50.72 Aligned_cols=33 Identities=21% Similarity=0.441 Sum_probs=25.3
Q ss_pred HHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 172 KLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 172 ~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+++. ...+++.+.|-||+||||+|..++....
T Consensus 11 ~~l~~-~~~~i~~~~gkGGvGKTt~a~~lA~~la 43 (348)
T 3io3_A 11 SIVQH-DSLKWIFVGGKGGVGKTTTSSSVAVQLA 43 (348)
T ss_dssp HHHTC-TTCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHhcC-CCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 34443 3468999999999999999999876543
No 443
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=83.71 E-value=0.6 Score=45.48 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.--|+|+|.+|+|||||...+.+..
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 4568899999999999999998764
No 444
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=83.67 E-value=0.6 Score=45.30 Aligned_cols=25 Identities=44% Similarity=0.725 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..-|+|+|.+|+|||||...+....
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4568999999999999999998754
No 445
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=83.63 E-value=0.57 Score=51.48 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+++|+|+.|+|||||.+.++--.+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 35899999999999999999987654
No 446
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=83.61 E-value=0.46 Score=47.81 Aligned_cols=38 Identities=18% Similarity=0.126 Sum_probs=18.6
Q ss_pred hccCCcccEEEecccccccccChhhccccCCCcccccc
Q 002972 560 LMASKSISELEVSRICFSGILGPRIADLISRDSQSLTV 597 (862)
Q Consensus 560 l~~~~~LrvLdLs~~~i~~~LP~~I~~L~~Lr~L~l~~ 597 (862)
|..+..|++|+|+++.|+...|..+++|.+|++|++..
T Consensus 52 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 52 FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp STTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 34444555555555555552244555555555555544
No 447
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=83.58 E-value=0.61 Score=45.26 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.--|+|+|.+|+|||||...+.+..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 3468899999999999999998653
No 448
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=83.56 E-value=0.65 Score=50.52 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
+..+|+|+|.+|+|||||...+...
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3679999999999999999999863
No 449
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=83.54 E-value=0.56 Score=45.33 Aligned_cols=41 Identities=10% Similarity=0.043 Sum_probs=36.1
Q ss_pred HhccCCcccEEEecccccccccChh-hccccCCCcccccccch
Q 002972 559 ALMASKSISELEVSRICFSGILGPR-IADLISRDSQSLTVVSA 600 (862)
Q Consensus 559 ~l~~~~~LrvLdLs~~~i~~~LP~~-I~~L~~Lr~L~l~~s~~ 600 (862)
.|..+..|++|+|+++.|+. +|.. +++|.+|++|++.....
T Consensus 76 ~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 76 VFDKLTQLTQLDLNDNHLKS-IPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp TTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCB
T ss_pred HhCCcchhhEEECCCCccce-eCHHHhccccCCCEEEeCCCCc
Confidence 46889999999999999999 8886 99999999999987543
No 450
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=83.51 E-value=0.6 Score=46.66 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=25.7
Q ss_pred EEEEE-cCCCCCHHHHHHHHHhCCCCCccCceEEEeee
Q 002972 182 VILIV-GLSGIGKSCLARQVASDPPERFVGGAVELGFG 218 (862)
Q Consensus 182 vI~I~-G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~ 218 (862)
+|+|+ +-||+||||+|..++.....+ . .+..+|++
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~-g-~VlliD~D 37 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQ-G-ETLLIDGD 37 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTT-S-CEEEEEEC
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhc-C-CEEEEECC
Confidence 56665 789999999999998766543 2 56666653
No 451
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=83.48 E-value=9.9 Score=42.75 Aligned_cols=198 Identities=16% Similarity=0.106 Sum_probs=115.6
Q ss_pred cCchhHHHHhhcCCCCCcccccHHHHHHHhhhcCChhhHHHHhhhccHHHHHhh-cCcchhhhhHHHHHHHHHHHhhcch
Q 002972 622 TGAVDKLAGLLQKSEDPMIQTDILTVLTKLAEFGTPETVDKVLQSIPFDKLATL-LSYDAKEWHENMFTILMSLAKVGKS 700 (862)
Q Consensus 622 ~~~l~~l~~~~~~~~~~~t~~~~~~~l~~l~e~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~l~~~g~~ 700 (862)
.|.+..|..++. .+++....+....|.-++..-+.+.-..+.+.=-+..+..+ ++..+++........+..|+.-..-
T Consensus 242 ~GaIp~LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~ 320 (458)
T 3nmz_A 242 KGCMRALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 320 (458)
T ss_dssp HHHHHHHHHGGG-CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred CCcHHHHHHHHh-CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHH
Confidence 455667766665 45555566666666666332122211222221112235554 5555666767667777777763322
Q ss_pred HHHHHHH-HhhhhHHHHHHhhcchhh----HHHHHHHHHHHHHHh-hCCC-ccccc-cCCcccccccccccccceeEeec
Q 002972 701 KAVEKMF-AFEIDKNLIKLLENGSEV----VQHHAIVTLKAFYEL-AGSP-ANASL-RPANLNLLPWQVRLRLERFIISD 772 (862)
Q Consensus 701 ~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 772 (862)
+ -..+. ..|.=..|+++|.++++- ++..|.-+|..+... .+.| ....+ ..|.
T Consensus 321 n-k~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~------------------- 380 (458)
T 3nmz_A 321 N-KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC------------------- 380 (458)
T ss_dssp H-HHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH-------------------
T ss_pred H-HHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHccc-------------------
Confidence 1 12333 478888999999988753 555565555555432 1334 11111 1222
Q ss_pred CCCCCCCCcccHHHHHHHHhcCCchhHHHHhhhhhhHHHhhCCchhHHHHhhcCChHHHHHhhccCcchhhhhhhhhhHH
Q 002972 773 RTVPPSPKSQTFEDVIHRLLDGDNKQVQGATQDLIPFLEKAGGEPCIKKFLEYDIIPELVKMMQCCVPEIQDSAYAAPDV 852 (862)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (862)
+..++.-+..++..-+-+|.--|.-++ +|...+...+.++|.|+-|+.++++.-++.|+.|-.||.-
T Consensus 381 -----------i~~Lv~LL~~~~~~v~~~A~~aL~nLa--~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~n 447 (458)
T 3nmz_A 381 -----------LQTLLQHLKSHSLTIVSNACGTLWNLS--ARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 447 (458)
T ss_dssp -----------HHHHHHHSSCSCHHHHHHHHHHHHHHH--SSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHcCCChHHHHHHHHHHHHHH--cCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 444555555555544444444443332 2567788889999999999999999888899999888876
Q ss_pred H
Q 002972 853 L 853 (862)
Q Consensus 853 ~ 853 (862)
|
T Consensus 448 L 448 (458)
T 3nmz_A 448 L 448 (458)
T ss_dssp H
T ss_pred H
Confidence 5
No 452
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=83.46 E-value=0.45 Score=46.69 Aligned_cols=39 Identities=15% Similarity=0.081 Sum_probs=24.6
Q ss_pred hccCCcccEEEecccccccccChhhccccCCCccccccc
Q 002972 560 LMASKSISELEVSRICFSGILGPRIADLISRDSQSLTVV 598 (862)
Q Consensus 560 l~~~~~LrvLdLs~~~i~~~LP~~I~~L~~Lr~L~l~~s 598 (862)
|..+..|++|+|+++.|++..|..+++|.+|++|++...
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 455666666666666666633566666666666666554
No 453
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=83.44 E-value=0.48 Score=45.10 Aligned_cols=39 Identities=21% Similarity=0.074 Sum_probs=18.8
Q ss_pred hccCCcccEEEecccccccccChhhccccCCCccccccc
Q 002972 560 LMASKSISELEVSRICFSGILGPRIADLISRDSQSLTVV 598 (862)
Q Consensus 560 l~~~~~LrvLdLs~~~i~~~LP~~I~~L~~Lr~L~l~~s 598 (862)
+..+..|++|+|+++.+...+|..++++.+|++|++..+
T Consensus 67 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 105 (168)
T 2ell_A 67 LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN 105 (168)
T ss_dssp CCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS
T ss_pred hccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC
Confidence 344445555555555554434444444555555555443
No 454
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=83.44 E-value=0.62 Score=45.28 Aligned_cols=25 Identities=36% Similarity=0.593 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.--|+|+|.+|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468899999999999999998754
No 455
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=83.40 E-value=0.46 Score=48.06 Aligned_cols=39 Identities=15% Similarity=0.024 Sum_probs=26.1
Q ss_pred HhccCCcccEEEecccccccccChhhccccCCCccccccc
Q 002972 559 ALMASKSISELEVSRICFSGILGPRIADLISRDSQSLTVV 598 (862)
Q Consensus 559 ~l~~~~~LrvLdLs~~~i~~~LP~~I~~L~~Lr~L~l~~s 598 (862)
.|..+..|++|+|+++.|+. +|..++++.+|++|++...
T Consensus 107 ~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQN 145 (229)
T ss_dssp TTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSS
T ss_pred HhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCC
Confidence 34566667777777777776 7777777777777766554
No 456
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=83.35 E-value=1.2 Score=46.35 Aligned_cols=28 Identities=25% Similarity=0.509 Sum_probs=23.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 177 EETHQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 177 ~~~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
+.....|+++|.+|+|||||...+....
T Consensus 36 ~~~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 36 DVNSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp TCCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3345678999999999999999998754
No 457
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=83.25 E-value=0.64 Score=44.99 Aligned_cols=24 Identities=46% Similarity=0.663 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.-|+|+|.+|+|||||...+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468899999999999999998764
No 458
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=83.25 E-value=0.6 Score=45.70 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.--|+|+|.+|+|||||...+.+..
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4568899999999999999998653
No 459
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=83.23 E-value=0.64 Score=45.04 Aligned_cols=25 Identities=28% Similarity=0.571 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..-|+|+|.+|+|||||...+....
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCC
Confidence 4578999999999999999998653
No 460
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=83.23 E-value=0.58 Score=46.05 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=25.6
Q ss_pred eEEEEE-cCCCCCHHHHHHHHHhCCCCCccCceEEEee
Q 002972 181 QVILIV-GLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (862)
Q Consensus 181 ~vI~I~-G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 217 (862)
++|+|+ +-||+||||+|..++.....+ ...+..+|.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~-g~~vlliD~ 38 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRS-GYNIAVVDT 38 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHT-TCCEEEEEC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHC-CCeEEEEEC
Confidence 578887 689999999999988765432 224555555
No 461
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=83.13 E-value=0.64 Score=45.57 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..-|+|+|.+|+|||||...+....
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCC
Confidence 4678999999999999999998654
No 462
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=83.12 E-value=0.74 Score=46.33 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
....|+|+|.+|+|||||...+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567899999999999999999865
No 463
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=83.08 E-value=0.9 Score=59.83 Aligned_cols=97 Identities=19% Similarity=0.129 Sum_probs=54.4
Q ss_pred HHHHHHh-cC-CCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEeeeeeeecccccCCCchHHHHHHHHHHHHHH
Q 002972 169 FLRKLLE-QE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLV 246 (862)
Q Consensus 169 ~l~~LL~-~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~w~~~~~~~~s~~~~~~~l~~~i~~~l~ 246 (862)
.+..+|. .. ...+.|.|+|++|+|||+||.+++.....+ ...+.|+++.. ...... ++.+
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~-G~~v~Fi~~e~---------~~~~l~---a~~~----- 1475 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEH---------ALDPIY---ARKL----- 1475 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEECTTS---------CCCHHH---HHHT-----
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccc---------ccCHHH---HHHc-----
Confidence 4777776 32 236799999999999999999997654322 22455555422 111111 2221
Q ss_pred Hhcccc-c-cCCCCCCHHHHHHHHHHHhc-CCCeEEEEEcCC
Q 002972 247 QIGFWK-K-IKDENSDLEYLCCLLQEALY-GKSILILLDDVW 285 (862)
Q Consensus 247 ~lg~~~-~-~~~~~~~~~~l~~~l~~~L~-~kr~LLVLDDV~ 285 (862)
|..- . .-......++....++...+ .+.-+||+|.+.
T Consensus 1476 --G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1476 --GVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp --TCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred --CCCchhceeecCChHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 2100 0 00112244555555555543 567899999994
No 464
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=83.03 E-value=0.4 Score=44.61 Aligned_cols=41 Identities=15% Similarity=0.056 Sum_probs=25.1
Q ss_pred HHHhccCCcccEEEecccccccccC--hhhccccCCCccccccc
Q 002972 557 LQALMASKSISELEVSRICFSGILG--PRIADLISRDSQSLTVV 598 (862)
Q Consensus 557 ~~~l~~~~~LrvLdLs~~~i~~~LP--~~I~~L~~Lr~L~l~~s 598 (862)
+..+..+..|++|+|+++.++. +| ..++++.+|++|++.++
T Consensus 81 ~~~~~~l~~L~~L~ls~N~i~~-~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 81 EVLAEKCPNLTHLNLSGNKIKD-LSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp HHHHHHCTTCCEEECTTSCCCS-HHHHGGGGGCTTCCEEECTTC
T ss_pred HHHhhhCCCCCEEECCCCcCCC-hHHHHHHhhCCCCCEEeCcCC
Confidence 3344556666666666666666 54 56666666666666554
No 465
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=83.01 E-value=0.63 Score=45.24 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.--|+|+|.+|+|||||...+....
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 3468899999999999999998754
No 466
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=82.98 E-value=0.67 Score=44.82 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
...-|+|+|.+|+|||||...+...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3467899999999999999999854
No 467
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=82.95 E-value=0.64 Score=52.76 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..+|.++|++|+||||+|+.+++...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999987654
No 468
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=82.94 E-value=12 Score=40.42 Aligned_cols=198 Identities=15% Similarity=0.096 Sum_probs=113.7
Q ss_pred cCchhHHHHhhcCCCCCcccccHHHHHHHhhhcCChhhHHHHhhhccHHHHHhh-cCcchhhhhHHHHHHHHHHHhhcch
Q 002972 622 TGAVDKLAGLLQKSEDPMIQTDILTVLTKLAEFGTPETVDKVLQSIPFDKLATL-LSYDAKEWHENMFTILMSLAKVGKS 700 (862)
Q Consensus 622 ~~~l~~l~~~~~~~~~~~t~~~~~~~l~~l~e~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~l~~~g~~ 700 (862)
.|.+..|..++. .+++....+....|.-|+.--+.+.-..+.+.=-+..+..+ ++..+++........+..|+.-..-
T Consensus 126 ~GaIp~LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~ 204 (354)
T 3nmw_A 126 KGCMRALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 204 (354)
T ss_dssp HHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred CCcHHHHHHHHC-CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh
Confidence 455777766665 45555556666666666432121211222221112235554 4545666666667777777763322
Q ss_pred HHHHHHH-HhhhhHHHHHHhhcchhh----HHHHHHHHHHHHHHh-hCCCc--cccccCCcccccccccccccceeEeec
Q 002972 701 KAVEKMF-AFEIDKNLIKLLENGSEV----VQHHAIVTLKAFYEL-AGSPA--NASLRPANLNLLPWQVRLRLERFIISD 772 (862)
Q Consensus 701 ~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (862)
+ -..+. ..|.=..|+++|.++++- ++..|.-+|..+... .+.|. +.....|.
T Consensus 205 n-k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~------------------- 264 (354)
T 3nmw_A 205 N-KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC------------------- 264 (354)
T ss_dssp H-HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTH-------------------
T ss_pred h-hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCC-------------------
Confidence 1 12333 468888899999988642 455565555555432 12231 11112232
Q ss_pred CCCCCCCCcccHHHHHHHHhcCCchhHHHHhhhhhhHHHhhCCchhHHHHhhcCChHHHHHhhccCcchhhhhhhhhhHH
Q 002972 773 RTVPPSPKSQTFEDVIHRLLDGDNKQVQGATQDLIPFLEKAGGEPCIKKFLEYDIIPELVKMMQCCVPEIQDSAYAAPDV 852 (862)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (862)
+..++.-|..++..-+-+|.--|--++ +|.......++++|+|+-|+++++...+++|+.|-.||.-
T Consensus 265 -----------i~~Lv~lL~~~~~~v~~~A~~aL~nLa--~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~n 331 (354)
T 3nmw_A 265 -----------LQTLLQHLKSHSLTIVSNACGTLWNLS--ARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 331 (354)
T ss_dssp -----------HHHHHHHTTCSCHHHHHHHHHHHHHHT--SSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHcCCChHHHHHHHHHHHHHh--CCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 445555555555444444443333332 2456788899999999999999999888899998888865
Q ss_pred H
Q 002972 853 L 853 (862)
Q Consensus 853 ~ 853 (862)
|
T Consensus 332 L 332 (354)
T 3nmw_A 332 L 332 (354)
T ss_dssp H
T ss_pred H
Confidence 5
No 469
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=82.93 E-value=1.4 Score=49.45 Aligned_cols=38 Identities=18% Similarity=0.129 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 167 SKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 167 ~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+.|..++.-.. -.-++|.|.+|+|||+|+..++++..
T Consensus 140 ir~ID~l~pigr-GQr~~Ifgg~G~GKt~Ll~~Ia~~~~ 177 (469)
T 2c61_A 140 ISTIDGTNTLVR-GQKLPIFSASGLPHNEIALQIARQAS 177 (469)
T ss_dssp CHHHHTTSCCBT-TCBCCEEECTTSCHHHHHHHHHHHCB
T ss_pred eEeeeeeecccc-CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344555544332 24567889999999999999998765
No 470
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=82.87 E-value=0.63 Score=45.78 Aligned_cols=24 Identities=38% Similarity=0.666 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
.--|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999999864
No 471
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=82.85 E-value=1.1 Score=48.63 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=24.8
Q ss_pred HHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 171 RKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 171 ~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
...+.......++.+.|-||+||||+|.+++....
T Consensus 17 ~~~~~~~~~~~i~v~sgKGGvGKTTvA~~LA~~lA 51 (349)
T 3ug7_A 17 EKKLEKKDGTKYIMFGGKGGVGKTTMSAATGVYLA 51 (349)
T ss_dssp HHHHHSSCSCEEEEEECSSSTTHHHHHHHHHHHHH
T ss_pred HHhhcccCCCEEEEEeCCCCccHHHHHHHHHHHHH
Confidence 33344444456777779999999999998876543
No 472
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=82.85 E-value=0.39 Score=51.14 Aligned_cols=40 Identities=10% Similarity=0.120 Sum_probs=23.4
Q ss_pred HhccCCcccEEEecccccccccChhhccccCCCccccccc
Q 002972 559 ALMASKSISELEVSRICFSGILGPRIADLISRDSQSLTVV 598 (862)
Q Consensus 559 ~l~~~~~LrvLdLs~~~i~~~LP~~I~~L~~Lr~L~l~~s 598 (862)
.|..++.|++|+|+++.+.+.+|..+++|.+|++|++...
T Consensus 96 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 135 (313)
T 1ogq_A 96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN 135 (313)
T ss_dssp GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS
T ss_pred hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCC
Confidence 3455566666666666665336666666666666665543
No 473
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=82.84 E-value=1.7 Score=48.69 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 166 KSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 166 ~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
-.+.|..++.-..+ .-++|.|.+|+|||+|+..+++...
T Consensus 134 GiraID~l~pigrG-Qr~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 134 GISTIDVMNTLVRG-QKLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp SCHHHHTTSCCBTT-CBCCEEEETTSCHHHHHHHHHHHCB
T ss_pred cceeeecccccccC-CEEEEecCCCCCchHHHHHHHHHHH
Confidence 33455555543322 3567999999999999999998754
No 474
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=82.80 E-value=0.62 Score=44.82 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.--|+|+|.+|+|||||...+....
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568899999999999999998653
No 475
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=82.79 E-value=0.69 Score=45.00 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
....|+|+|.+|+|||||...+....
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 36689999999999999999998653
No 476
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=82.74 E-value=0.67 Score=45.59 Aligned_cols=25 Identities=40% Similarity=0.721 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..-|+|+|.+|+|||||...+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568999999999999999998654
No 477
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=82.71 E-value=1.1 Score=47.58 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 181 QVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 181 ~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
.+++++|.+|+|||||.+.+. ...
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 489999999999999999999 543
No 478
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=82.67 E-value=0.58 Score=45.74 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
..-|+|+|.+|+|||||...+...
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999754
No 479
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=82.66 E-value=0.63 Score=44.22 Aligned_cols=44 Identities=11% Similarity=0.024 Sum_probs=34.3
Q ss_pred HHHhccCCcccEEEecccccccccC--hhhccccCCCcccccccchh
Q 002972 557 LQALMASKSISELEVSRICFSGILG--PRIADLISRDSQSLTVVSAE 601 (862)
Q Consensus 557 ~~~l~~~~~LrvLdLs~~~i~~~LP--~~I~~L~~Lr~L~l~~s~~~ 601 (862)
+..+..+..|++|+|+++.|+. +| ..++++.+|++|++......
T Consensus 88 ~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 88 DMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp CHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGG
T ss_pred HHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCc
Confidence 3455668888888998888888 77 78888888888888776443
No 480
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=82.66 E-value=0.68 Score=46.65 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 002972 182 VILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 182 vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-|.|+|.+|+|||+|...+.++.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~ 37 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDS 37 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCcCHHHHHHHHHhCC
Confidence 47799999999999999988653
No 481
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=82.64 E-value=0.55 Score=50.51 Aligned_cols=43 Identities=7% Similarity=-0.018 Sum_probs=33.8
Q ss_pred HHhccCCcccEEEecccccccccChhhccccCCCcccccccch
Q 002972 558 QALMASKSISELEVSRICFSGILGPRIADLISRDSQSLTVVSA 600 (862)
Q Consensus 558 ~~l~~~~~LrvLdLs~~~i~~~LP~~I~~L~~Lr~L~l~~s~~ 600 (862)
..|..+..|++|+|+++.|++..|..+++|.+|++|+|....+
T Consensus 50 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 50 RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp GGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred hHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 3577888899999999999884445678899999998876543
No 482
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=82.63 E-value=0.75 Score=51.21 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
...+++|+|..|+|||||.+.+....
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 35699999999999999999998743
No 483
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=82.56 E-value=0.76 Score=46.24 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPPE 206 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~~ 206 (862)
...|+|-|+.|+||||+++.+.+....
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 368999999999999999999887653
No 484
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=82.56 E-value=0.45 Score=45.61 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
...-|+|+|.+|+|||||...+...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3567889999999999999998743
No 485
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=82.54 E-value=0.69 Score=47.06 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 179 THQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 179 ~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
....|+|+|.+|+|||||...+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 35678999999999999999998754
No 486
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=82.51 E-value=0.7 Score=44.91 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..-|+|+|.+|+|||||...+.+..
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999998763
No 487
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=82.40 E-value=1.3 Score=45.69 Aligned_cols=27 Identities=22% Similarity=0.485 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 178 ETHQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 178 ~~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.....|+|+|.+|+|||||...+....
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345679999999999999999998754
No 488
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=82.39 E-value=1.1 Score=49.90 Aligned_cols=38 Identities=26% Similarity=0.421 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 166 KSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 166 ~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
....+..++. ..-.+++|+|+.|+|||||.+.+.....
T Consensus 155 ~~~~L~~l~~--~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 155 NHDNFRRLIK--RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp HHHHHHHHHT--SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH--hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 3445666654 2456999999999999999999987554
No 489
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=82.37 E-value=0.71 Score=45.58 Aligned_cols=39 Identities=21% Similarity=0.393 Sum_probs=21.2
Q ss_pred cHHHHHHHHHhcCCCceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 165 SKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 165 ~~~~~l~~LL~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
+..+-+..+.... ..--|+|+|.+|+|||||...+.+..
T Consensus 16 ~~~~~m~~~~~~~-~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 16 PRGSHMENLYFQG-QAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp ---------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cchhHHHhHhhcC-CeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 3333343333332 33467899999999999999998653
No 490
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=82.34 E-value=0.77 Score=48.80 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
...|+|+|.+|+|||||...+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 458999999999999999999865
No 491
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=82.33 E-value=0.94 Score=43.98 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..-|+|+|.+|+|||||...+....
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCC
Confidence 4568899999999999999998743
No 492
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=82.33 E-value=0.61 Score=44.84 Aligned_cols=42 Identities=19% Similarity=0.123 Sum_probs=34.9
Q ss_pred HhccCCcccEEEecccccccccCh--hhccccCCCcccccccchh
Q 002972 559 ALMASKSISELEVSRICFSGILGP--RIADLISRDSQSLTVVSAE 601 (862)
Q Consensus 559 ~l~~~~~LrvLdLs~~~i~~~LP~--~I~~L~~Lr~L~l~~s~~~ 601 (862)
.|..+..|++|+|+++.|+. +|. .++.+.+|++|++......
T Consensus 83 ~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 83 LDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp HHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG
T ss_pred hhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC
Confidence 35678889999999999988 888 8999999999998876443
No 493
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=82.30 E-value=0.67 Score=46.17 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASD 203 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~ 203 (862)
.--|+|+|.+|+|||||...+.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999999864
No 494
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=82.30 E-value=0.51 Score=54.67 Aligned_cols=26 Identities=42% Similarity=0.557 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~~ 205 (862)
..+|+|+|+.|+|||||++.++....
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhc
Confidence 46899999999999999999997654
No 495
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=82.29 E-value=0.67 Score=44.51 Aligned_cols=40 Identities=10% Similarity=0.029 Sum_probs=35.4
Q ss_pred HHhccCCcccEEEecccccccccCh-hhccccCCCccccccc
Q 002972 558 QALMASKSISELEVSRICFSGILGP-RIADLISRDSQSLTVV 598 (862)
Q Consensus 558 ~~l~~~~~LrvLdLs~~~i~~~LP~-~I~~L~~Lr~L~l~~s 598 (862)
..|..+..|++|+|+++.|+. +|. .+++|.+|++|++...
T Consensus 72 ~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 72 GVFDKLTQLTQLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS
T ss_pred hhccCCCCCCEEECCCCccCE-eCHHHhcCCCCCCEEEeCCC
Confidence 357889999999999999999 877 4999999999999874
No 496
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=82.25 E-value=0.68 Score=51.14 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
-.+++|+|+.|+|||||.+.++--.
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 4699999999999999999998643
No 497
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=82.25 E-value=0.72 Score=45.57 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..-|+|+|.+|+|||||...+....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998754
No 498
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=82.18 E-value=0.73 Score=45.57 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
.--|+|+|.+|+|||||...+.+..
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999998653
No 499
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=82.08 E-value=0.6 Score=45.52 Aligned_cols=25 Identities=28% Similarity=0.628 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q 002972 180 HQVILIVGLSGIGKSCLARQVASDP 204 (862)
Q Consensus 180 ~~vI~I~G~gGiGKTtLA~~v~~~~ 204 (862)
..-|+|+|.+|+|||||...+....
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999998653
No 500
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=82.07 E-value=0.67 Score=50.58 Aligned_cols=49 Identities=18% Similarity=0.120 Sum_probs=33.0
Q ss_pred HHHHHHHh-cC-CCceEEEEEcCCCCCHHHHHHHHHhCCCCCccCceEEEee
Q 002972 168 KFLRKLLE-QE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (862)
Q Consensus 168 ~~l~~LL~-~~-~~~~vI~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 217 (862)
..+..+|. .+ ..-+++.|.|.+|+||||||.+++...... ...++|++.
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~-g~~vlyid~ 99 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDA 99 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEES
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeC
Confidence 35566665 21 235699999999999999999998654311 124666665
Done!