BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002973
         (861 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9PG57|SYP_XYLFA Proline--tRNA ligase OS=Xylella fastidiosa (strain 9a5c) GN=proS
           PE=3 SV=2
          Length = 564

 Score = 38.9 bits (89), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 13/106 (12%)

Query: 430 ERALTNGVLSIQRGTEPGVMIYMLPLGRGDS---KAKSYHGWGTRFSSFWCCYGTGIESF 486
           +RA+  G + I RG E G   ++  LGR  +   KA     +G   +    CYG G+   
Sbjct: 391 DRAVDGGKICIARGIEVG---HVFQLGRKYAEAMKATVLDEYGKAVTMTMGCYGIGVSRI 447

Query: 487 SKLGDSIYFEEEGNVPGLYIIQYISSSLDWKSGNIVLNQKVDPVVS 532
                +   E+  +V G   I + +S   W+    V+N K DPV++
Sbjct: 448 V----AAAIEQNHDVAG---IIWPASIAPWQVAVCVINPKKDPVIT 486


>sp|B2V3Z2|GPDA_CLOBA Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Clostridium
           botulinum (strain Alaska E43 / Type E3) GN=gpsA PE=3
           SV=1
          Length = 330

 Score = 37.0 bits (84), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 13/96 (13%)

Query: 173 LSASAHMWASTHNVTLKEKMTAVVS-----ALSECQNKMGSGYLSAFPSEQFDRFEALKP 227
           LS  +H       V LK   T VVS     A SE QN   + +   + +E     E    
Sbjct: 131 LSGPSH----AEEVVLKLPTTLVVSSENMNAASEAQNLFMTSFFRVYTNEDLVGVE---- 182

Query: 228 VWAPYYTIHKILAGLLDQYTFADNTQALKMTKWMVE 263
           V      I  + AG+LD   + DNT+A  MT+ M E
Sbjct: 183 VGGAVKNIIALAAGILDGLGYGDNTKAALMTRGMKE 218


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.132    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 329,500,443
Number of Sequences: 539616
Number of extensions: 14114603
Number of successful extensions: 30200
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 30198
Number of HSP's gapped (non-prelim): 8
length of query: 861
length of database: 191,569,459
effective HSP length: 126
effective length of query: 735
effective length of database: 123,577,843
effective search space: 90829714605
effective search space used: 90829714605
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)