Query 002973
Match_columns 861
No_of_seqs 260 out of 883
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 14:29:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002973.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002973hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07944 DUF1680: Putative gly 100.0 2E-110 4E-115 973.8 48.3 499 109-632 1-520 (520)
2 COG3533 Uncharacterized protei 100.0 4E-109 9E-114 907.6 35.3 494 102-636 9-505 (589)
3 PF05270 AbfB: Alpha-L-arabino 99.6 6.1E-15 1.3E-19 144.0 8.8 110 725-844 2-116 (142)
4 PF05270 AbfB: Alpha-L-arabino 99.2 5.5E-11 1.2E-15 116.4 8.5 125 675-819 12-142 (142)
5 cd00249 AGE AGE domain; N-acyl 98.9 1E-07 2.2E-12 107.3 19.8 297 168-478 54-374 (384)
6 cd00249 AGE AGE domain; N-acyl 98.1 6.9E-05 1.5E-09 84.5 17.7 191 169-371 117-336 (384)
7 PF07944 DUF1680: Putative gly 97.9 0.00027 5.9E-09 83.7 16.6 240 185-437 6-267 (520)
8 COG1331 Highly conserved prote 97.9 0.0016 3.4E-08 77.7 22.4 265 153-440 199-573 (667)
9 PF03663 Glyco_hydro_76: Glyco 97.8 0.00017 3.7E-09 81.9 12.9 186 169-372 38-256 (370)
10 PF03663 Glyco_hydro_76: Glyco 97.8 8.5E-05 1.8E-09 84.4 9.7 196 234-440 38-256 (370)
11 PF07470 Glyco_hydro_88: Glyco 97.7 0.0017 3.8E-08 72.4 18.3 231 169-442 27-290 (336)
12 cd04791 LanC_SerThrkinase Lant 97.6 0.0014 3E-08 72.1 15.6 183 172-372 88-276 (321)
13 cd04791 LanC_SerThrkinase Lant 97.6 0.004 8.7E-08 68.5 18.6 177 238-441 88-277 (321)
14 COG1331 Highly conserved prote 97.4 0.0062 1.3E-07 72.8 18.1 129 237-369 415-567 (667)
15 COG3533 Uncharacterized protei 97.1 0.0011 2.4E-08 76.0 7.1 124 169-317 133-258 (589)
16 PF07221 GlcNAc_2-epim: N-acyl 97.0 0.0073 1.6E-07 67.6 13.1 252 168-433 22-304 (346)
17 PTZ00470 glycoside hydrolase f 96.9 0.042 9.1E-07 65.1 18.2 125 171-316 113-251 (522)
18 cd04792 LanM-like LanM-like pr 96.7 0.065 1.4E-06 67.1 19.7 217 175-439 549-781 (825)
19 cd04434 LanC_like LanC-like pr 96.7 0.14 3.1E-06 56.1 19.6 225 173-440 56-301 (343)
20 PF07221 GlcNAc_2-epim: N-acyl 96.6 0.021 4.5E-07 64.0 12.9 184 171-371 85-309 (346)
21 cd04794 euk_LANCL eukaryotic L 95.7 0.3 6.5E-06 54.8 16.3 193 169-372 103-305 (343)
22 PF06662 C5-epim_C: D-glucuron 95.6 0.12 2.6E-06 53.6 11.6 140 168-316 31-188 (189)
23 cd04794 euk_LANCL eukaryotic L 95.6 0.48 1E-05 53.2 17.2 225 172-435 57-301 (343)
24 cd04434 LanC_like LanC-like pr 95.6 0.43 9.3E-06 52.3 16.6 188 172-370 104-299 (343)
25 PF01532 Glyco_hydro_47: Glyco 95.4 0.098 2.1E-06 61.3 11.4 195 238-437 82-312 (452)
26 cd04792 LanM-like LanM-like pr 95.3 0.73 1.6E-05 57.9 19.3 215 178-434 502-732 (825)
27 COG2942 N-acyl-D-glucosamine 2 95.1 0.4 8.6E-06 54.6 14.4 196 160-371 111-337 (388)
28 COG4403 LcnDR2 Lantibiotic mod 95.1 0.17 3.6E-06 62.2 12.0 119 170-315 699-821 (963)
29 COG4225 Predicted unsaturated 95.0 0.18 3.8E-06 56.2 11.0 186 238-449 41-251 (357)
30 PF07470 Glyco_hydro_88: Glyco 94.8 0.087 1.9E-06 58.9 8.2 136 292-449 30-168 (336)
31 PTZ00470 glycoside hydrolase f 94.2 1.1 2.3E-05 53.6 15.6 197 177-383 232-466 (522)
32 PF06662 C5-epim_C: D-glucuron 93.8 0.2 4.3E-06 52.0 7.6 132 293-431 36-186 (189)
33 cd04793 LanC LanC is the cycla 93.7 2.4 5.1E-05 48.3 17.1 182 184-371 120-327 (382)
34 COG4225 Predicted unsaturated 93.6 0.66 1.4E-05 51.8 11.7 141 288-449 37-179 (357)
35 PF01532 Glyco_hydro_47: Glyco 92.6 0.99 2.1E-05 53.0 12.0 263 169-439 79-389 (452)
36 PF00759 Glyco_hydro_9: Glycos 90.7 6.3 0.00014 45.8 15.9 243 186-457 94-374 (444)
37 KOG2244 Highly conserved prote 86.4 4.1 9E-05 48.0 10.2 139 170-315 508-671 (786)
38 cd04793 LanC LanC is the cycla 85.8 14 0.0003 42.1 14.2 143 167-316 172-322 (382)
39 KOG2787 Lanthionine synthetase 85.5 7 0.00015 43.6 10.8 129 170-317 221-356 (403)
40 KOG2429 Glycosyl hydrolase, fa 84.7 8.3 0.00018 45.8 11.6 156 138-316 228-400 (622)
41 KOG2244 Highly conserved prote 84.5 67 0.0014 38.5 18.5 286 99-427 382-713 (786)
42 PLN02909 Endoglucanase 79.6 31 0.00066 41.1 14.0 120 185-314 119-264 (486)
43 PLN02345 endoglucanase 78.2 23 0.00049 42.1 12.4 122 186-313 82-228 (469)
44 PF06917 Pectate_lyase_2: Peri 76.8 5.1 0.00011 47.0 6.3 72 239-315 390-465 (557)
45 PLN02266 endoglucanase 75.8 51 0.0011 39.6 14.5 126 185-315 129-280 (510)
46 KOG2787 Lanthionine synthetase 75.2 30 0.00064 38.9 11.3 111 251-372 240-361 (403)
47 PLN02340 endoglucanase 74.7 52 0.0011 40.4 14.5 170 140-315 57-264 (614)
48 COG4403 LcnDR2 Lantibiotic mod 74.7 44 0.00095 42.1 13.7 156 181-364 661-820 (963)
49 PLN00119 endoglucanase 74.0 55 0.0012 39.1 14.1 125 186-315 117-265 (489)
50 PF05147 LANC_like: Lanthionin 73.4 4.9 0.00011 44.5 5.2 177 179-371 118-308 (355)
51 PLN02175 endoglucanase 71.5 35 0.00077 40.6 11.7 104 252-371 194-309 (484)
52 COG2942 N-acyl-D-glucosamine 2 70.3 2.1E+02 0.0047 33.1 19.8 258 139-452 21-287 (388)
53 PLN02613 endoglucanase 68.5 54 0.0012 39.3 12.5 122 184-315 110-257 (498)
54 KOG2431 1, 2-alpha-mannosidase 68.0 8.4 0.00018 44.3 5.4 80 237-316 179-270 (546)
55 PF15095 IL33: Interleukin 33; 67.9 48 0.001 35.3 10.4 87 698-788 157-245 (268)
56 PF05147 LANC_like: Lanthionin 67.5 16 0.00035 40.4 7.7 131 171-316 171-303 (355)
57 PLN02308 endoglucanase 66.2 1E+02 0.0023 36.8 14.2 123 186-314 112-261 (492)
58 PLN02420 endoglucanase 65.6 1E+02 0.0022 37.3 14.0 169 141-315 69-276 (525)
59 TIGR02474 pec_lyase pectate ly 63.6 7.1 0.00015 43.3 3.7 50 405-457 45-94 (290)
60 PF06917 Pectate_lyase_2: Peri 63.5 24 0.00053 41.6 8.1 87 169-268 386-472 (557)
61 PLN03009 cellulase 63.0 1.1E+02 0.0025 36.5 13.8 124 185-314 112-264 (495)
62 KOG2430 Glycosyl hydrolase, fa 61.7 34 0.00073 38.5 8.3 143 153-317 235-389 (587)
63 PLN02171 endoglucanase 58.3 1.3E+02 0.0029 37.0 13.5 61 252-315 201-265 (629)
64 TIGR02474 pec_lyase pectate ly 51.9 1E+02 0.0022 34.4 10.2 89 171-267 48-148 (290)
65 KOG2204 Mannosyl-oligosacchari 51.2 61 0.0013 38.9 8.6 40 342-382 532-571 (625)
66 PF13243 Prenyltrans_1: Prenyl 50.3 19 0.00041 33.0 3.7 77 173-268 29-105 (109)
67 KOG2430 Glycosyl hydrolase, fa 44.1 1.9E+02 0.0042 32.8 10.6 181 181-374 199-396 (587)
68 PF05592 Bac_rhamnosid: Bacter 36.1 2E+02 0.0043 34.1 10.2 123 182-316 164-311 (509)
69 TIGR03463 osq_cycl 2,3-oxidosq 34.8 3.6E+02 0.0077 33.4 12.3 107 153-268 357-489 (634)
70 PF13249 Prenyltrans_2: Prenyl 33.4 53 0.0011 30.0 3.9 60 192-267 42-103 (113)
71 PF09492 Pec_lyase: Pectic aci 33.1 1.9E+02 0.004 32.4 8.6 91 170-268 42-144 (289)
72 COG1188 Ribosome-associated he 33.1 81 0.0018 29.7 4.9 36 567-611 33-68 (100)
73 TIGR01787 squalene_cyclas squa 31.5 1.5E+02 0.0033 36.5 8.4 80 184-268 382-472 (621)
74 cd02889 SQCY Squalene cyclase 30.3 3.7E+02 0.008 29.8 10.7 97 169-268 94-203 (348)
75 PF13464 DUF4115: Domain of un 30.0 3.7E+02 0.0081 23.4 9.6 25 551-580 38-62 (77)
76 TIGR03000 plancto_dom_1 Planct 29.8 3E+02 0.0064 24.7 7.6 21 553-578 3-23 (75)
77 TIGR01507 hopene_cyclase squal 26.5 2.3E+02 0.0051 35.0 8.8 104 153-268 364-483 (635)
78 PHA02651 IL-1 receptor antagon 24.8 45 0.00097 34.1 1.8 29 772-801 115-143 (165)
79 PF05726 Pirin_C: Pirin C-term 24.1 1.5E+02 0.0033 27.4 5.2 52 569-633 30-87 (104)
80 PF09492 Pec_lyase: Pectic aci 23.8 53 0.0012 36.6 2.4 51 405-458 40-90 (289)
81 PLN00119 endoglucanase 23.4 1.9E+02 0.004 34.8 6.9 63 357-432 203-265 (489)
82 TIGR01577 oligosac_amyl oligos 23.0 6.3E+02 0.014 31.0 11.6 129 156-315 295-449 (616)
83 PRK13807 maltose phosphorylase 22.8 3.5E+02 0.0075 34.4 9.4 145 109-269 307-466 (756)
84 PF09586 YfhO: Bacterial membr 22.2 2.2E+02 0.0047 36.1 7.7 58 538-602 773-831 (843)
85 TIGR01507 hopene_cyclase squal 21.5 5.4E+02 0.012 31.9 10.5 77 169-268 454-531 (635)
86 TIGR03515 GldC gliding motilit 21.3 1.9E+02 0.0042 27.5 5.1 45 226-270 60-105 (108)
87 PHA02811 putative host range p 21.2 1.4E+02 0.003 31.2 4.5 40 538-580 32-74 (197)
88 COG1339 Transcriptional regula 20.2 1E+02 0.0023 32.5 3.4 47 556-609 145-199 (214)
No 1
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=100.00 E-value=1.9e-110 Score=973.77 Aligned_cols=499 Identities=36% Similarity=0.631 Sum_probs=457.9
Q ss_pred CeEeCCCCchHHHHHHHHhhhhccCcchhhHhHHHhcCCCCCCCCCCCCc--CCCcCccccchhHHHHHHHHHHHhcCCh
Q 002973 109 DVKLDPSSLHWRAQQTNLEYLLMLDVDSLVWSFQKTAGSPTAGKAYEGWE--DPTCELRGHFVGHYLSASAHMWASTHNV 186 (861)
Q Consensus 109 ~V~L~~~~~~~~~~~~~~~~ll~~d~drlL~nFR~~AGl~~~g~~ygGWE--~~d~~l~Gh~~Gh~LsAlA~~~a~t~D~ 186 (861)
+|+|++ +||+++|+++++|++++++|+|+++||..|||+.++.++|||| +++..++||++||||||+|++|+.++|+
T Consensus 1 ~V~l~~-~~~~~~~~~~~~~~l~~~~d~ll~~~r~~agl~~~~~~~g~we~~~~~~~~~~~~~g~wl~a~a~~~~~~~D~ 79 (520)
T PF07944_consen 1 DVRLTD-GFWKRRQELNRAYLLPLDPDRLLYNFRSHAGLPNFAIAYGGWEGEFPGWWFRGHDVGKWLEAAAYAYAYTGDP 79 (520)
T ss_pred CeEECc-HHHHHHHHHHHHHHHHhHHHHHhhhcCcccCCCCccccCCCCccCCCCCccCCCcHHHHHHHHHHHHHHCCCH
Confidence 699995 8999999999999999999999999999999999988999999 8899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCccccCCcchhhhhhccCCcccc----cchhHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 002973 187 TLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAP----YYTIHKILAGLLDQYTFADNTQALKMTKWMV 262 (861)
Q Consensus 187 ~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~~~~~~~l~~~W~p----yYt~HkI~aGLld~y~~tG~~~aL~va~~~a 262 (861)
+|++|++++|+.|++||+ +||||+++++.. ..+.+..|+| +|+.|||++||+|+|++||++++|+|++|+|
T Consensus 80 ~l~~~~d~~V~~l~~~Q~--~dGYl~~~~~~~---~~~~~~~w~~~~he~Y~~~~ll~gl~~~y~~tG~~~~L~v~~k~a 154 (520)
T PF07944_consen 80 ELKAKADEIVDELAAAQQ--PDGYLGTYPEER---NFNPDDRWAPDMHELYCLGKLLEGLIDYYEATGNERALDVATKLA 154 (520)
T ss_pred HHHHHHHHHHHHHHHhcc--CCceeccccccc---ccccccCCCCCccceehHhHHHHHHHHHHHHHCcHHHHHHHHHHH
Confidence 999999999999999999 999999998643 1235678888 9999999999999999999999999999999
Q ss_pred HHHHHHhhhcccccccccccccccccccchHHHHHHHHHHcCCHHHHHHhhhcccccccch--hcccCCCCCCCcccCCc
Q 002973 263 EYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGL--LAVQADDISGFHANTHI 340 (861)
Q Consensus 263 d~~~~r~~~~~~~~~~~~~~~~l~~E~GGmne~L~~LY~~TGd~ryL~lA~~F~~~~~~~~--l~~~~D~l~g~Hanthi 340 (861)
||+.+++... ..+..+..+.+|+|||+++|+|||++|||++||+||++|++..+.++ +..++|.+++.|+|+|+
T Consensus 155 d~~~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~~~~~~~~~~~~~d~~~~~~a~~~~ 230 (520)
T PF07944_consen 155 DWVYRRLSRL----GPEPGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQRGFDPYDLAYGQDHLPGRHANTHI 230 (520)
T ss_pred HHHHHHhccC----CHHHhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCCchhhcCccCCCcccccee
Confidence 9996655432 22223344557889999999999999999999999999999999888 88899999999999999
Q ss_pred cchh-------HHHHHHHhcCCcHHHHHHHHHHHHhhccceeeecCCCCC---CCCCCCcccccCCCcCcccchhhHHHH
Q 002973 341 PVVI-------GSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSAG---EFWSDPKRLASTLGTENEESCTTYNML 410 (861)
Q Consensus 341 P~~~-------G~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~yvTGG~g~~---E~f~~p~~l~~~l~~~~~ETCas~nml 410 (861)
|.++ |++++|++|||++|++++++||++|+++|||+|||+|++ |+|++++++++ ...++|||++||||
T Consensus 231 ~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~~~~y~tGg~g~~~~~E~f~~~~~lp~--~~~~~EtCas~~~~ 308 (520)
T PF07944_consen 231 GHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVVRHHMYATGGIGSDHEGEHFGPPYDLPN--RLAYAETCASVNMM 308 (520)
T ss_pred eEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHhcCeeccCCCcCCCCCccCCCCCCCCc--CCCCccccHHHHHH
Confidence 9888 999999999999999999999999999999999999998 99999999998 34569999999999
Q ss_pred HHHHhhhcccCCchHHHHHHHHHhhhhcccccCCCCCeEEEeccCCCCCCCCcccCCCCCccCcccccCCCccchhhhcc
Q 002973 411 KVSRHLFRWTKEMVYADYYERALTNGVLSIQRGTEPGVMIYMLPLGRGDSKAKSYHGWGTRFSSFWCCYGTGIESFSKLG 490 (861)
Q Consensus 411 kl~~~Lf~~tgD~~YaD~~ERaLyN~iLa~q~~~d~g~~~Y~~PL~~g~~k~~~~~~~g~~~~~F~CC~gtg~e~~akl~ 490 (861)
|++++||++|||++|+|+|||++||++|++|++ |+++++|+|||+++..+... ..+.+++++||||+||++|+++||+
T Consensus 309 ~~~~~L~~~tgd~~yaD~~Er~lyN~~la~~~~-d~~~~~Y~~pl~~~~~~~~~-~~~~~~~~~~~CC~~n~~r~~~~~~ 386 (520)
T PF07944_consen 309 KLARRLFRLTGDARYADYYERALYNALLAGQSP-DGGSFFYFNPLNSGPYKHRW-KNYRTPWFSFWCCPGNGARGWAKLP 386 (520)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHhcccccccCC-CCCeeEEecCCccCcCcccc-ccccCCCCCCCCCcchHHHHHHHHh
Confidence 999999999999999999999999999999997 99999999999887654221 2466788999999999999999999
Q ss_pred cceEEeecCCCCcEEEEEeeCcEEEEeecc--eEEEEEeCCCCCCCCCeeEEEEEEeCCCCCeeeEEEEeecCCccCCCc
Q 002973 491 DSIYFEEEGNVPGLYIIQYISSSLDWKSGN--IVLNQKVDPVVSWDPYLRMTHTFSSKQEASQSSSLNLRIPLWTNSNGA 568 (861)
Q Consensus 491 ~~iY~~~~~~~~~LyVnLYipStl~~~~~g--v~l~q~t~~~yp~~~~~~V~ltV~~~~~~~~~ftL~LRIP~Wa~~~~~ 568 (861)
++||++++ ++||||||+||+++|+.+| |+|+|+|+ |||++ +|+|+|++. ++.+|+|+||||+|++ ++
T Consensus 387 ~~iy~~~~---~~l~v~ly~~s~~~~~~~~~~v~i~q~T~--yP~~~--~v~i~v~~~--~~~~f~l~lRIP~Wa~--~~ 455 (520)
T PF07944_consen 387 DYIYFRDD---DGLYVNLYIPSELTWPVGGGTVTITQETD--YPFEG--TVRITVSPD--KPVPFTLRLRIPSWAK--GA 455 (520)
T ss_pred hhheEecC---CEEEEEEEcceEEEEEECCcEEEEEEecC--CCCCC--CEEEEEEcC--CCccEEEEEEccCCCC--Cc
Confidence 99999986 6999999999999999988 88888888 88998 999999874 4889999999999998 79
Q ss_pred EEEECCee-ccCCCCCCEEEEEeeeCCCCEEEEEecceeEEEecCCCccccCCeEEEeecceeee
Q 002973 569 KATLNGQS-LSLPAPGNFISVTQRWSSTDKLTIQLPINLRTEAIKDDRPAYASIQAILYGPYLLA 632 (861)
Q Consensus 569 ~v~VNG~~-v~~~~~ggY~~I~R~Wk~GD~V~L~LPm~lr~~~~~d~~~~~~~~vAv~rGPlVlA 632 (861)
+|+|||++ .....++||++|+|+|++||+|+|+|||++|++++++.++...+++||+|||||||
T Consensus 456 ~i~vNG~~~~~~~~~~gy~~i~r~W~~gD~v~l~lpm~~r~~~~~~~~~~~~~~vAv~rGPlV~a 520 (520)
T PF07944_consen 456 TIRVNGEPVVDTAVPGGYLTIEREWKDGDVVELRLPMEVRLEPANPRVPDDPGRVAVMRGPLVYA 520 (520)
T ss_pred EEEECCEeCCCCcCCCCeEEEEeeccCCcEEEEEecCeeEEEeCCCCCccCCCeEEEEeCchhcC
Confidence 99999999 55567999999999999999999999999999999777777789999999999998
No 2
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=4.3e-109 Score=907.57 Aligned_cols=494 Identities=26% Similarity=0.420 Sum_probs=445.5
Q ss_pred cccccCCCeEeCCCCchHHHHHHHHhhhhccCcchhhHhHHHhcCCCCCCCCCCCCcCCCcCccccchhHHHHHHHHHHH
Q 002973 102 LKEVSLHDVKLDPSSLHWRAQQTNLEYLLMLDVDSLVWSFQKTAGSPTAGKAYEGWEDPTCELRGHFVGHYLSASAHMWA 181 (861)
Q Consensus 102 l~~~pl~~V~L~~~~~~~~~~~~~~~~ll~~d~drlL~nFR~~AGl~~~g~~ygGWE~~d~~l~Gh~~Gh~LsAlA~~~a 181 (861)
++|+++++|.+ ...|..+.++++.++.|+|++++-.++.|+.+...++||+... +.||.+||||||+|++++
T Consensus 9 ~r~v~v~~~~~------~~~qg~~~d~v~~~~~d~Lldr~~ea~~l~~~d~~r~g~~~q~--f~dsdlgkwlea~A~~l~ 80 (589)
T COG3533 9 LRPVTVKDVIF------GQFQGKNRDVVVSLQADRLLDRCHEAAMLPAKDPFRGGWETQM--FWDSDLGKWLEAAAYSLA 80 (589)
T ss_pred cccCCcCchhc------cccccccceeEEecCHHHHHhHhhhccCCCccCcccccceeee--eccccHHHHHHHHHHHHh
Confidence 77777777776 2345777889999999999999999999998888899999544 778889999999999999
Q ss_pred hcCChhHHHHHHHHHHHHHHHHhhcCCCccccCCcc--hhhhhhccCCcccccchhHHHHHHHHHHHHHcCChhHHHHHH
Q 002973 182 STHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSE--QFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNTQALKMTK 259 (861)
Q Consensus 182 ~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~--~~~~~~~l~~~W~pyYt~HkI~aGLld~y~~tG~~~aL~va~ 259 (861)
.++|++|++++|++|++++++|+ +|||||++.+. +-.||.++++.|+.||.+|+|. |++|+|++||+.++|+|++
T Consensus 81 ~~~dp~Lekr~D~vi~~~a~~Qd--edGYl~~~~q~~~pe~Rw~nlr~~HelY~aghLie-g~va~~qaTGkr~lldV~~ 157 (589)
T COG3533 81 NKGDPELEKRIDEVVEELARAQD--EDGYLGGWFQADFPEERWGNLRPNHELYCAGHLIE-GGVAAHQATGKRRLLDVVC 157 (589)
T ss_pred cCCCHHHHHHHHHHHHHHHHhhc--cCCcccceeeccCchhhhhccccchHHHHhHHHHh-hhhHHHHhhCcchHHHHHH
Confidence 99999999999999999999999 99999999864 3468999999999777666555 5679999999999999999
Q ss_pred HHHHHHHHHhhhcccccccccccccccccccchHHHHHHHHHHcCCHHHHHHhhhcccccccchhcccCCCCCCCcccCC
Q 002973 260 WMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQADDISGFHANTH 339 (861)
Q Consensus 260 ~~ad~~~~r~~~~~~~~~~~~~~~~l~~E~GGmne~L~~LY~~TGd~ryL~lA~~F~~~~~~~~l~~~~D~l~g~Hanth 339 (861)
|+|||+.+.|++.+ ++.+.+ +++++|+++|++||+.|||+|||+||++|.+....+|++.+.|.+.+.||+++
T Consensus 158 rlADhi~tvfgp~~----~q~~g~---~gH~eielAl~~Ly~~Tg~~rYL~LA~~Fi~~rg~~P~~~rg~e~~~gHAvr~ 230 (589)
T COG3533 158 RLADHIATVFGPEE----DQVPGY---CGHPEIELALAELYRLTGDQRYLDLARRFIHQRGVEPLAQRGDELEGGHAVRQ 230 (589)
T ss_pred HHHHhhhhhcCccc----cccccc---cCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccChhhcCchhhhhhhHHHH
Confidence 99999999887642 234444 55556999999999999999999999999999999999888889999999999
Q ss_pred ccchhHHHHHHHhcCCcHHHHHHHHHHHHhhccceeeecCCCC-CCCCCCCcccccCCCcCcccchhhHHHHHHHHhhhc
Q 002973 340 IPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSA-GEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFR 418 (861)
Q Consensus 340 iP~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~yvTGG~g~-~E~f~~p~~l~~~l~~~~~ETCas~nmlkl~~~Lf~ 418 (861)
||+.+|+|++|+++||+.++.++++||++|+++|+|+|||+|+ +|+|+.+|+|++ .+.|+|||+|||||||++||+.
T Consensus 231 iyl~~G~A~l~~~~gDds~r~~~~~lW~~~t~k~~YitGG~g~~~E~F~~~ydlpn--~~~yAEtCas~~l~~~a~Rml~ 308 (589)
T COG3533 231 IYLYIGAADLAEETGDDSLRQAAEFLWQNVTTRQSYITGGNGSSNEHFGPDYDLPN--RTAYAETCASYNLLKLARRMLG 308 (589)
T ss_pred HHHhhhHHHHHHHhCCHHHHHHHHHHHHHhhhhheEEecccCCccccCCccccCcc--cchHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999965 599999999998 6799999999999999999999
Q ss_pred ccCCchHHHHHHHHHhhhhcccccCCCCCeEEEeccCCCCCCCCcccCCCCCccCcccccCCCccchhhhcccceEEeec
Q 002973 419 WTKEMVYADYYERALTNGVLSIQRGTEPGVMIYMLPLGRGDSKAKSYHGWGTRFSSFWCCYGTGIESFSKLGDSIYFEEE 498 (861)
Q Consensus 419 ~tgD~~YaD~~ERaLyN~iLa~q~~~d~g~~~Y~~PL~~g~~k~~~~~~~g~~~~~F~CC~gtg~e~~akl~~~iY~~~~ 498 (861)
+.+|.+|||+|||+|||++|++|++ |+++|||+|||+.+.. +...++.+||||.||+++.++++++|||...+
T Consensus 309 ~~~d~~yaDvmErALYN~iL~g~sl-Dg~~ffY~nPle~~gr------h~r~~w~~c~CCppn~ar~~as~g~yiY~~~~ 381 (589)
T COG3533 309 WGPDSQYADVMERALYNHILAGQSL-DGGMFFYFNPLESGGR------HSRQKWFSCWCCPPNGARSVASIGDYIYTRAD 381 (589)
T ss_pred cCCCchHHHHHHHHHHhccccccCC-CCCeeEEecchhhCCC------ccccccccCCCCCCcHhhhhhhccceEEccCC
Confidence 9999999999999999999999996 9999999999986541 22457788999999999999999999999986
Q ss_pred CCCCcEEEEEeeCcEEEEeecceEEEEEeCCCCCCCCCeeEEEEEEeCCCCCeeeEEEEeecCCccCCCcEEEECCeecc
Q 002973 499 GNVPGLYIIQYISSSLDWKSGNIVLNQKVDPVVSWDPYLRMTHTFSSKQEASQSSSLNLRIPLWTNSNGAKATLNGQSLS 578 (861)
Q Consensus 499 ~~~~~LyVnLYipStl~~~~~gv~l~q~t~~~yp~~~~~~V~ltV~~~~~~~~~ftL~LRIP~Wa~~~~~~v~VNG~~v~ 578 (861)
++||||||+.|+++.+..+|.|+|+|+ |||++ +|+|||+.+ .+.+|+|+||||+||. .++++|||+.+.
T Consensus 382 ---d~lyvnLy~~S~~~l~~~~v~irqet~--yPw~g--~v~ltv~~~--~p~~~tlaLRlP~W~a--~~tl~vNG~~~~ 450 (589)
T COG3533 382 ---DALYVNLYIASTADLPGDDVQIRQETN--YPWSG--QVKLTVERA--QPVLFTLALRLPAWCA--APTLRVNGKEVI 450 (589)
T ss_pred ---CEEEEEEeecccccccccceEEEeccC--CCCcC--eeEEEEecC--CCceEEEEEecccccC--CcEEEEcCcchh
Confidence 689999999999999998899999999 89998 999999985 4889999999999999 799999998777
Q ss_pred CCCCCCEEEEEeeeCCCCEEEEEecceeEEEecCCCccccCCeEEEeecceeeeeecC
Q 002973 579 LPAPGNFISVTQRWSSTDKLTIQLPINLRTEAIKDDRPAYASIQAILYGPYLLAGHTS 636 (861)
Q Consensus 579 ~~~~ggY~~I~R~Wk~GD~V~L~LPm~lr~~~~~d~~~~~~~~vAv~rGPlVlA~~~~ 636 (861)
....+||++|+|+|++||+|+|.|||++|+...|+++.. .+ ||+|||||||++..
T Consensus 451 ~~~~~GYa~i~R~Wq~GDrV~L~LpM~vr~y~nP~~r~~-~G--Ai~rGPlVyc~e~~ 505 (589)
T COG3533 451 QTRGKGYARISREWQAGDRVELMLPMPVRIYANPDVRHD-VG--AIMRGPLVYCAEAG 505 (589)
T ss_pred hccCCCeeeeeehhcCCCeEEEeecceeEeecCCcchhh-hh--hhhcCCeEEEEecC
Confidence 677899999999999999999999999998777776533 22 99999999999854
No 3
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins. L-Arabinose is a constituent of plant cell wall polysaccharides. It is found in a polymeric form in L-arabinan, in which the backbone is formed by 1,5-a- linked l-arabinose residues that can be branched via 1,2-a- and 1,3-a-linked l-arabinofuranose side chains. AbfB hydrolyses 1,5-a, 1,3-a and 1,2-a linkages in both oligosaccharides and polysaccharides, which contain terminal non-reducing l-arabinofuranoses in side chains [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3AKI_A 3AKF_A 3AKH_A 3AKG_A 2D44_A 1WD3_A 2D43_A 1WD4_A 3KMV_E.
Probab=99.57 E-value=6.1e-15 Score=144.04 Aligned_cols=110 Identities=22% Similarity=0.353 Sum_probs=86.8
Q ss_pred eeeecCCCCCCceeeeeccccceEEeCCCCCCC-----CceEEEeecCCCCCceEEEeccCCCCeeEEeccccCCCceEE
Q 002973 725 SVMLEPFDFPGMLVVQQGTDGELVVSDSPKEGD-----SSVFRLVAGLDGKDETISLEAVNQNGCFVYSGVNFNSGASLK 799 (861)
Q Consensus 725 ~v~lepfd~Pg~~v~~~~~~~~l~v~~~~~~~~-----~s~f~~vpgl~g~~g~vsle~~~~pg~~~~~~~~~~~g~~~~ 799 (861)
+++++.++.|+++|+|+|....+ ++...+.. |++|+|||||++ +++|||||+++||.|||+ .+..|+
T Consensus 2 ~~~~~s~~~~~ryirh~~~~~~~--~~v~~~s~~~~r~da~f~vvpGLa~-~~~vSfES~~~PG~yLrh-----~~~~v~ 73 (142)
T PF05270_consen 2 SLRLTSPNYPDRYIRHRGSLVRL--DPVSSSSSALDRADATFRVVPGLAD-SSCVSFESVNYPGYYLRH-----SNFRVR 73 (142)
T ss_dssp EEEEEESSSTTEEEEEETTEEEE--EES-SSGGHHHHHGG-EEEEE-SS--TTCEEEEESSSTTEEEEE-----ETTEEE
T ss_pred eEEEECCCCCCeEEEEcCceEEE--eeccCCcchhhccCceEEEEEccCC-CCEEEEEECCCCCcEEEE-----ECCEEE
Confidence 46799999999999999555555 44444444 899999999988 589999999999999998 388899
Q ss_pred EEeccCCCccccccccceecccCccccCCceEEEecCCCceeccc
Q 002973 800 LSCSTESSEDGFNEAVSFVMEKGISEYHPISFVAKGARRNFLLAP 844 (861)
Q Consensus 800 ~~~~~~~~~~~f~~~asf~~~~gl~~~~piSf~a~g~~~~~ll~p 844 (861)
|+ +. ++++.|.++|+|...+||+...-+||+...-+..||.+=
T Consensus 74 l~-~~-d~s~~F~~dATF~~~~Gl~~~g~~sfeS~n~Pg~ylrh~ 116 (142)
T PF05270_consen 74 LE-KN-DGSALFREDATFCPRPGLAGPGYVSFESYNYPGRYLRHY 116 (142)
T ss_dssp EE-E---SSHHHHHHT-EEEEE-SSSTTEEEEEESSSTTEEEEEE
T ss_pred Ee-ec-CCCccccCCceEEEecCCCCCCcceEEEecCCCeEEEEE
Confidence 99 55 788889999999999999995557999999999999753
No 4
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins. L-Arabinose is a constituent of plant cell wall polysaccharides. It is found in a polymeric form in L-arabinan, in which the backbone is formed by 1,5-a- linked l-arabinose residues that can be branched via 1,2-a- and 1,3-a-linked l-arabinofuranose side chains. AbfB hydrolyses 1,5-a, 1,3-a and 1,2-a linkages in both oligosaccharides and polysaccharides, which contain terminal non-reducing l-arabinofuranoses in side chains [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3AKI_A 3AKF_A 3AKH_A 3AKG_A 2D44_A 1WD3_A 2D43_A 1WD4_A 3KMV_E.
Probab=99.18 E-value=5.5e-11 Score=116.45 Aligned_cols=125 Identities=18% Similarity=0.310 Sum_probs=88.3
Q ss_pred eEEEeccCCceEeeecCC-CCCcccccEEEEEEecCCCccccccccccCCceeeecCCCCCCceeeeeccccceEEeCCC
Q 002973 675 AFVLSNSNQSITMEKFPE-SGTDAALHATFRLIMKEESSSEVSSLKDVIGKSVMLEPFDFPGMLVVQQGTDGELVVSDSP 753 (861)
Q Consensus 675 ~f~~~~~~~~~~~~~~p~-~g~~~~~~~~fr~~~~~~~~~~~~~p~~~~g~~v~lepfd~Pg~~v~~~~~~~~l~v~~~~ 753 (861)
.-.+.+.+..+.+.+... .+.-..-.++|+++.+-.+ ...|.+|+-+.||.||+|+ +..|.++...
T Consensus 12 ~ryirh~~~~~~~~~v~~~s~~~~r~da~f~vvpGLa~-----------~~~vSfES~~~PG~yLrh~--~~~v~l~~~d 78 (142)
T PF05270_consen 12 DRYIRHRGSLVRLDPVSSSSSALDRADATFRVVPGLAD-----------SSCVSFESVNYPGYYLRHS--NFRVRLEKND 78 (142)
T ss_dssp TEEEEEETTEEEEEES-SSGGHHHHHGG-EEEEE-SS------------TTCEEEEESSSTTEEEEEE--TTEEEEEE--
T ss_pred CeEEEEcCceEEEeeccCCcchhhccCceEEEEEccCC-----------CCEEEEEECCCCCcEEEEE--CCEEEEeecC
Confidence 344566777777777644 2323456799999964222 2379999999999999998 7777777655
Q ss_pred CCC---CCceEEEeecCCCCCceEEEeccCCCCeeEEeccccCCCceEEEEecc--CCCccccccccceec
Q 002973 754 KEG---DSSVFRLVAGLDGKDETISLEAVNQNGCFVYSGVNFNSGASLKLSCST--ESSEDGFNEAVSFVM 819 (861)
Q Consensus 754 ~~~---~~s~f~~vpgl~g~~g~vsle~~~~pg~~~~~~~~~~~g~~~~~~~~~--~~~~~~f~~~asf~~ 819 (861)
.+. .|..|..+|||.+ +|.|||||.+.||+|||+ . +..|+|. +. .+..+.|+++++|..
T Consensus 79 ~s~~F~~dATF~~~~Gl~~-~g~~sfeS~n~Pg~ylrh-~----~~~l~l~-~~~g~d~~~~f~~datf~v 142 (142)
T PF05270_consen 79 GSALFREDATFCPRPGLAG-PGYVSFESYNYPGRYLRH-Y----NGELYLA-PIGGYDNTDSFRADATFRV 142 (142)
T ss_dssp SSHHHHHHT-EEEEE-SSS-TTEEEEEESSSTTEEEEE-E----TTEEEEE-ESSSGG-SHHHHHHT-EEE
T ss_pred CCccccCCceEEEecCCCC-CCcceEEEecCCCeEEEE-E----CCEEEEe-cCCCcCcchhhccccEEeC
Confidence 443 7789999999999 799999999999999998 3 7889999 42 123567888998863
No 5
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=98.87 E-value=1e-07 Score=107.35 Aligned_cols=297 Identities=13% Similarity=0.068 Sum_probs=170.3
Q ss_pred chhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcC-CCccccCCcchhhhhhccCCcccccchhHHHHHHHHHHH
Q 002973 168 FVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMG-SGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQY 246 (861)
Q Consensus 168 ~~Gh~LsAlA~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~-dGYL~a~~~~~~~~~~~l~~~W~pyYt~HkI~aGLld~y 246 (861)
..+..|-|+|.++..++|++.++.++..++.|.+.-.... .||+..+..+ ......... .|..=.++.|+..+|
T Consensus 54 ~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~-g~~~~~~~~----l~~~a~~l~ala~~~ 128 (384)
T cd00249 54 LQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQD-GRPVDATKD----LYSHAFALLAAAQAA 128 (384)
T ss_pred EecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCC-CCCcccccc----hHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999988543112 4777665421 000000111 222222566788999
Q ss_pred HHcCChhHHHHHHHHHHHHHHHhhhcccccc-c-ccccccc--cccccchHHHHHHHHHHcCCHHHHHHhhhccc---cc
Q 002973 247 TFADNTQALKMTKWMVEYFYNRVQNVITKYS-V-ERHWNSL--NEETGGMNDVLYRLYTITQDPKHLLLAHLFDK---PC 319 (861)
Q Consensus 247 ~~tG~~~aL~va~~~ad~~~~r~~~~~~~~~-~-~~~~~~l--~~E~GGmne~L~~LY~~TGd~ryL~lA~~F~~---~~ 319 (861)
+++|++++|+.|.++++++.+++-+.-..+- . ...+... ...+.=+.++|.+||++|||++|++.|+.+.+ ..
T Consensus 129 ~at~d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~~all~l~~~tgd~~~~~~A~~l~~~~~~~ 208 (384)
T cd00249 129 KVGGDPEARALAEETIDLLERRFWEDHPGAFDEADPGTPPYRGSNPHMHLLEAMLAAYEATGEQKYLDRADEIADLILDR 208 (384)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988731001110 0 0001111 11111124789999999999999999875421 11
Q ss_pred ccch----hcc-cCCCCCCCc--ccCCc-c-----chhHHHHHHHhcCCcHHHHHHHHHHHHhhcccee-e-ecCCCCCC
Q 002973 320 FLGL----LAV-QADDISGFH--ANTHI-P-----VVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGY-A-TGGTSAGE 384 (861)
Q Consensus 320 ~~~~----l~~-~~D~l~g~H--anthi-P-----~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~y-v-TGG~g~~E 384 (861)
+.++ +.. ..+...-.. ....+ | .+.....+|+++||+.|++.++..|+.+.+ +.. . +||+- +
T Consensus 209 ~~~~~~G~~~e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~-~~~d~~~G~~~--~ 285 (384)
T cd00249 209 FIDAESGVVREHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRLFDLALA-LGWDPERGGLY--Y 285 (384)
T ss_pred hcCcccCeEEEEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH-hCcCccCCCEE--E
Confidence 1111 000 001100000 01111 2 223456779999999999999999998875 332 1 23221 1
Q ss_pred CCCCCcccccCCCcCcccchhhHHHHHHHHhhhcccCCchHHHHHHHHHhhhhcc-cccCCCCCeEEEeccCCCCCCCCc
Q 002973 385 FWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTNGVLS-IQRGTEPGVMIYMLPLGRGDSKAK 463 (861)
Q Consensus 385 ~f~~p~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgD~~YaD~~ERaLyN~iLa-~q~~~d~g~~~Y~~PL~~g~~k~~ 463 (861)
.+.++...+ ...+.-.....++++....|++++||.+|.+.++++. +.+.. -.++..++.+.+..+-+.-.....
T Consensus 286 ~~~~~~~~~---~~~~~~~w~~~E~~~a~~~l~~~tgd~~~~~~~~~~~-~~~~~~~~d~~~G~w~~~~~~~g~~~~~~~ 361 (384)
T cd00249 286 SFLDDGGLL---EDDDKRWWPQTEALKAALALAGITGDERYWQWYQRAW-AYLWRHFIDPEYGLWFGYLDADGKVLLTPK 361 (384)
T ss_pred eeECCCCCc---ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHHHHhcCCCCCCcceeeECCCCCCcCCCC
Confidence 111111111 1234444557788888888999999999999998874 22232 223322344455544331111110
Q ss_pred ccCCCCCccCccccc
Q 002973 464 SYHGWGTRFSSFWCC 478 (861)
Q Consensus 464 ~~~~~g~~~~~F~CC 478 (861)
..|++.++.+-||
T Consensus 362 --~~~~~~yH~~~a~ 374 (384)
T cd00249 362 --GPAKTFYHVVRAL 374 (384)
T ss_pred --CCCCCCccHHhHH
Confidence 3466666666665
No 6
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=98.15 E-value=6.9e-05 Score=84.51 Aligned_cols=191 Identities=13% Similarity=0.070 Sum_probs=119.6
Q ss_pred hhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcCCC-ccccCCcchhhhhhccCCcccccchhHHHHHHHHHHHH
Q 002973 169 VGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSG-YLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYT 247 (861)
Q Consensus 169 ~Gh~LsAlA~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dG-YL~a~~~~~~~~~~~l~~~W~pyYt~HkI~aGLld~y~ 247 (861)
-.+.|.|++.+|..++|++.++.+.++++.|.+..- ..+| |...+... .. ......-.+|.+. +++..++
T Consensus 117 ~a~~l~ala~~~~at~d~~~l~~A~~~~~~l~~~~~-~~~g~~~~~~~~~----~~---~~~~~~~~~h~~~-all~l~~ 187 (384)
T cd00249 117 HAFALLAAAQAAKVGGDPEARALAEETIDLLERRFW-EDHPGAFDEADPG----TP---PYRGSNPHMHLLE-AMLAAYE 187 (384)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc-cCCCcccCCCCCC----CC---CCCCCChhHHHHH-HHHHHHH
Confidence 367899999999999999999999999999988774 2333 43222111 11 1111233456677 5789999
Q ss_pred HcCChhHHHHHHHHHHHHHHHhhhcccc-c---cccccccccc------ccccc---hHHHHHHHHHHcCCHHHHHHhhh
Q 002973 248 FADNTQALKMTKWMVEYFYNRVQNVITK-Y---SVERHWNSLN------EETGG---MNDVLYRLYTITQDPKHLLLAHL 314 (861)
Q Consensus 248 ~tG~~~aL~va~~~ad~~~~r~~~~~~~-~---~~~~~~~~l~------~E~GG---mne~L~~LY~~TGd~ryL~lA~~ 314 (861)
+||+++.++.+.++.+.+.+++.....+ + ..+. |.++. .+-|. +...|.+||++||+++|++.|+.
T Consensus 188 ~tgd~~~~~~A~~l~~~~~~~~~~~~~G~~~e~~~~~-~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~ 266 (384)
T cd00249 188 ATGEQKYLDRADEIADLILDRFIDAESGVVREHFDED-WNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARR 266 (384)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhcCcccCeEEEEECCC-CCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 9999999999999999998877431111 1 0000 11000 11121 23467899999999999999986
Q ss_pred ccc---ccccchhc-------ccCCCCCCCcccCCc--c---chhHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 002973 315 FDK---PCFLGLLA-------VQADDISGFHANTHI--P---VVIGSQMRYEVTGDPLYKVTGTFFMDIVNA 371 (861)
Q Consensus 315 F~~---~~~~~~l~-------~~~D~l~g~Hanthi--P---~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~ 371 (861)
+.+ ..+.++.. ...+.. ....+.. | .+.+.+..|++|||+.|++.++..|+.+.+
T Consensus 267 ~~~~~~~~~~d~~~G~~~~~~~~~~~~--~~~~~~~~w~~~E~~~a~~~l~~~tgd~~~~~~~~~~~~~~~~ 336 (384)
T cd00249 267 LFDLALALGWDPERGGLYYSFLDDGGL--LEDDDKRWWPQTEALKAALALAGITGDERYWQWYQRAWAYLWR 336 (384)
T ss_pred HHHHHHHhCcCccCCCEEEeeECCCCC--cccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 532 11222210 001110 0111111 2 235578889999999999999999998864
No 7
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=97.87 E-value=0.00027 Score=83.73 Aligned_cols=240 Identities=15% Similarity=0.106 Sum_probs=131.7
Q ss_pred ChhHHHHHHHHHHHHHHHHhh--cCCCccccC-C--cchhhhhh--ccCCcccccchhHHHHHHHHHHHHHcCChhHHHH
Q 002973 185 NVTLKEKMTAVVSALSECQNK--MGSGYLSAF-P--SEQFDRFE--ALKPVWAPYYTIHKILAGLLDQYTFADNTQALKM 257 (861)
Q Consensus 185 D~~L~~k~d~~Vd~L~~~Q~~--~~dGYL~a~-~--~~~~~~~~--~l~~~W~pyYt~HkI~aGLld~y~~tG~~~aL~v 257 (861)
|.-++++.+...+.+...|-. ...+...+. + ......|+ .....|.--..+|-|. |+.-.|..++|+++.+.
T Consensus 6 ~~~~~~~~~~~~~~~l~~~~d~ll~~~r~~agl~~~~~~~g~we~~~~~~~~~~~~~g~wl~-a~a~~~~~~~D~~l~~~ 84 (520)
T PF07944_consen 6 DGFWKRRQELNRAYLLPLDPDRLLYNFRSHAGLPNFAIAYGGWEGEFPGWWFRGHDVGKWLE-AAAYAYAYTGDPELKAK 84 (520)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHhhhcCcccCCCCccccCCCCccCCCCCccCCCcHHHHHH-HHHHHHHHCCCHHHHHH
Confidence 455666666666666666531 022222221 1 11222333 1112222233444444 55678889999999999
Q ss_pred HHHHHHHHHHHhhh--cccccc------ccccccc-ccccc--cchHHHHHHHHHHcCCHHHHHHhhhccccc--ccchh
Q 002973 258 TKWMVEYFYNRVQN--VITKYS------VERHWNS-LNEET--GGMNDVLYRLYTITQDPKHLLLAHLFDKPC--FLGLL 324 (861)
Q Consensus 258 a~~~ad~~~~r~~~--~~~~~~------~~~~~~~-l~~E~--GGmne~L~~LY~~TGd~ryL~lA~~F~~~~--~~~~l 324 (861)
+.++.+.+.+.-.+ .+..+. ....|.. .|+-+ |-|.++|+.-|+.||+++.|+.|.++-+-- ....+
T Consensus 85 ~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~~ll~gl~~~y~~tG~~~~L~v~~k~ad~~~~~~~~~ 164 (520)
T PF07944_consen 85 ADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAPDMHELYCLGKLLEGLIDYYEATGNERALDVATKLADWVYRRLSRL 164 (520)
T ss_pred HHHHHHHHHHhccCCceecccccccccccccCCCCCccceehHhHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHhccC
Confidence 99999999865321 111111 1122332 11111 225689999999999999999998884311 01111
Q ss_pred cccCCCCCCCcccCCccchhHHHHHHHhcCCcHHHHHHHHHHHHhhccceeeecCCCCCCCCCCCcccccCCCcCcccch
Q 002973 325 AVQADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESC 404 (861)
Q Consensus 325 ~~~~D~l~g~HanthiP~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~yvTGG~g~~E~f~~p~~l~~~l~~~~~ETC 404 (861)
. .+.+.......|.=+.++.+++|++|||++|++.|+.|.+.-...- .+ .+... +.++.. .....+..
T Consensus 165 ~--~~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~~~~~~------~~-~~~~~--d~~~~~-~a~~~~~h 232 (520)
T PF07944_consen 165 G--PEPGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQRGFDP------YD-LAYGQ--DHLPGR-HANTHIGH 232 (520)
T ss_pred C--HHHhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------Cc-hhhcC--ccCCCc-cccceeeE
Confidence 1 0111011112333345788999999999999999999998533111 00 11111 122321 11222333
Q ss_pred hh--HHHHHHHHhhhcccCCchHHHHHHHHHhhhh
Q 002973 405 TT--YNMLKVSRHLFRWTKEMVYADYYERALTNGV 437 (861)
Q Consensus 405 as--~nmlkl~~~Lf~~tgD~~YaD~~ERaLyN~i 437 (861)
+. .-+.+-.-.+++.|||.+|.+..|+..-|-+
T Consensus 233 ~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~ 267 (520)
T PF07944_consen 233 AVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVV 267 (520)
T ss_pred EEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 22 2345555679999999999999999876543
No 8
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.0016 Score=77.75 Aligned_cols=265 Identities=18% Similarity=0.148 Sum_probs=156.7
Q ss_pred CCCCCcCCCcCccccchhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcCCCccccCCcchhhhhhccCCccc--
Q 002973 153 AYEGWEDPTCELRGHFVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWA-- 230 (861)
Q Consensus 153 ~ygGWE~~d~~l~Gh~~Gh~LsAlA~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~~~~~~~l~~~W~-- 230 (861)
.||||-+.+-.. ..|-|+-+-..+..++|++-++.+..-.+.++.-== -|=-.|.|. |+. ....|-
T Consensus 199 ~~GGfg~~pKFP----~~~~l~~Llr~~~~~~d~~~~~~~~~TL~~ma~GGI--yDhlgGGF~-----RYS-tD~~WlvP 266 (667)
T COG1331 199 EYGGFGSAPKFP----PPHLLLFLLRYSLRTGDERALDMVLRTLDAMARGGI--YDHLGGGFF-----RYS-TDREWLVP 266 (667)
T ss_pred hhCCcCCCCCCC----ChHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHccCC--ccccCCcee-----eee-cCCceech
Confidence 567876655333 478888888888889998888888888776642210 110011111 111 112232
Q ss_pred ----ccchhHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhhccccc----c-----cccc---cc------ccc--
Q 002973 231 ----PYYTIHKILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKY----S-----VERH---WN------SLN-- 286 (861)
Q Consensus 231 ----pyYt~HkI~aGLld~y~~tG~~~aL~va~~~ad~~~~r~~~~~~~~----~-----~~~~---~~------~l~-- 286 (861)
..|.--.++.....+|++|||+..++++....+|+.+.+...-.++ + .++- |. .+.
T Consensus 267 HFEKMLyDnA~l~~~y~~ay~~tgd~~y~~~a~~i~~~l~rel~sp~ggFyss~DAD~~g~EG~~Y~Ws~eEi~~~Lg~d 346 (667)
T COG1331 267 HFEKMLYDNALLLRAYAEAYRATGDDLYRRAAEGILDYLLRELYSPEGGFYSSLDADSDGEEGKYYTWSVEELKEVLGED 346 (667)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCceeecccccCcccCCCeeecCHHHHHHHhccc
Confidence 3455556777777999999999999999999999997653200000 0 0000 10 000
Q ss_pred ---------------------------cc-------------------------------------ccchHHHHHHHHHH
Q 002973 287 ---------------------------EE-------------------------------------TGGMNDVLYRLYTI 302 (861)
Q Consensus 287 ---------------------------~E-------------------------------------~GGmne~L~~LY~~ 302 (861)
.+ -|-|..+|++.+..
T Consensus 347 ~~~~~~~f~vs~~GnfeGrnvL~~~~~~~~~~~~~~~~l~~~r~kL~~~R~~R~~P~~Ddkvlt~wNglmi~aLa~a~~~ 426 (667)
T COG1331 347 AELACKYFDVSEEGNFEGRNVLHVPGPLEEAIEEAEEKLERAREKLLAAREKRKQPSRDDKVLTDWNGLMIAALAEAGRV 426 (667)
T ss_pred HHHHHHHcccCCCCCcCCceeecccCchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCCcceeeccHHHHHHHHHHHHHH
Confidence 00 23366899999999
Q ss_pred cCCHHHHHHhhhcc---cccccchhcccCCCCCCCccc----------CCccchhHHHHHHHhcCCcHHHHHHHHHHHHh
Q 002973 303 TQDPKHLLLAHLFD---KPCFLGLLAVQADDISGFHAN----------THIPVVIGSQMRYEVTGDPLYKVTGTFFMDIV 369 (861)
Q Consensus 303 TGd~ryL~lA~~F~---~~~~~~~l~~~~D~l~g~Han----------thiP~~~G~a~~Y~~TGD~~y~~aa~~fwd~V 369 (861)
+||++|+++|++-. ...+.+ |.|...+-. .+.-.+.|...+|++|+|.+|++.|+.+++.+
T Consensus 427 ~~d~~~l~~A~~~~~fi~~~l~~------~rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~t~d~~yL~~A~~L~~~~ 500 (667)
T COG1331 427 LGDPEYLEAAERAADFILDNLYV------DRLLRRYRGGEAAVAGLLEDYAFLILGLLALYEATGDLAYLEKAIELADEA 500 (667)
T ss_pred cCChHHHHHHHHHHHHHHHhhcc------cchheeeecCcccccccchhHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHH
Confidence 99999999998742 222211 112111111 11223578899999999999999999999998
Q ss_pred hccceeeecCC----CCCCCCC-CCcccccCCCcCcccchhhHHHHHHHHhhhcccCCchHHHHHHHHH--hhhhccc
Q 002973 370 NASHGYATGGT----SAGEFWS-DPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERAL--TNGVLSI 440 (861)
Q Consensus 370 ~~~h~yvTGG~----g~~E~f~-~p~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgD~~YaD~~ERaL--yN~iLa~ 440 (861)
..+--=..||. +.+|... .+.. ..+.-.++=+++...-|. +|-++|||.+|.|..|++| +=+.+..
T Consensus 501 i~~f~d~~gGf~~t~~~~~~l~ir~~~----~~D~a~~S~na~~~~~L~-~Ls~ltg~~~y~e~A~~~L~a~~~~~~~ 573 (667)
T COG1331 501 IADFWDDEGGFYDTPSDSEDLLIRPKE----PTDGATPSGNAVAAQALL-RLSLLTGDARYLEAAEDILQAFAGLAER 573 (667)
T ss_pred HHHhcCCCCCcccCCCcccccccCCCC----CCCCCCCCHHHHHHHHHH-HHHhhcCchhHHHHHHHHHHHHHHHHHh
Confidence 74222222342 1122221 1111 112233555555444333 4778999999999999999 5554444
No 9
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=97.80 E-value=0.00017 Score=81.86 Aligned_cols=186 Identities=17% Similarity=0.171 Sum_probs=104.8
Q ss_pred hhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcCCCccccCCc--chhhhhhccCCcccccchhHHHHHHHHHHH
Q 002973 169 VGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPS--EQFDRFEALKPVWAPYYTIHKILAGLLDQY 246 (861)
Q Consensus 169 ~Gh~LsAlA~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~--~~~~~~~~l~~~W~pyYt~HkI~aGLld~y 246 (861)
.|+.++++.-.+..++|+++++.+...+.....-. .+-|...... .+.|.. .| +-.+++++|
T Consensus 38 ~a~~~~~~~d~~~~t~d~~y~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~DD~-----aw--------~~la~l~ay 101 (370)
T PF03663_consen 38 QAVMLSALIDYYRRTGDPTYNDLIQNALLNQRGPN---YDSYNPSNGSGDRYYDDN-----AW--------WALALLRAY 101 (370)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHT---TSSS--S------BHHHH-----HH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcchHHHHHHHHHHHHhccc---ccccccccccccCccChH-----HH--------HHHHHHHHH
Confidence 48899999999999999888888877766554332 1213322110 011211 11 234567999
Q ss_pred HHcCCh-----hHHHHHHHHHHHHHHHhhhccccccccccccc-----cc-----ccccchHHHHHHHHHHcCCHHHHHH
Q 002973 247 TFADNT-----QALKMTKWMVEYFYNRVQNVITKYSVERHWNS-----LN-----EETGGMNDVLYRLYTITQDPKHLLL 311 (861)
Q Consensus 247 ~~tG~~-----~aL~va~~~ad~~~~r~~~~~~~~~~~~~~~~-----l~-----~E~GGmne~L~~LY~~TGd~ryL~l 311 (861)
++||++ +.|+.|.+..+++..+..... -...-+|.. .. +.-|..-...+|||++|||++||+.
T Consensus 102 e~t~~~~~~~~~yL~~A~~i~~~~~~~wd~~~--cgGGi~W~~~~~~~~~~~Kna~sN~~~~~laarL~~~t~~~~Yl~~ 179 (370)
T PF03663_consen 102 ELTGDQPSDNPKYLDLAKEIFDFLISGWDDTS--CGGGIWWSIDDTNSGYDYKNAISNGPAAQLAARLYRITGDQTYLDW 179 (370)
T ss_dssp HHH--H-----HHHHHHHHHHHHHHHTB-SGG---GS-BEEET----TEEEEEEHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred HhhCCCcchHHHHHHHHHHHHHHHHHhcCCcc--CCCCccccccccCCCCCcccccchHHHHHHHHHHHHhcCChHHHHH
Confidence 999999 999999999999986654321 011112331 00 1111234678899999999999999
Q ss_pred hhhccc----ccccchhc-ccCCCC----------CCCcccCCccchhHHHHHHHhcCCc-HHHHHHHHHHHHhhcc
Q 002973 312 AHLFDK----PCFLGLLA-VQADDI----------SGFHANTHIPVVIGSQMRYEVTGDP-LYKVTGTFFMDIVNAS 372 (861)
Q Consensus 312 A~~F~~----~~~~~~l~-~~~D~l----------~g~HanthiP~~~G~a~~Y~~TGD~-~y~~aa~~fwd~V~~~ 372 (861)
|++..+ ..+.++.. .=.|.+ ...+...+..++.|++.+|++|+++ .|++.+++.-+-+..+
T Consensus 180 A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~yl~~A~~la~~~~~~ 256 (370)
T PF03663_consen 180 AKKIYDWMRDSGLIDPSTGLVYDGINIDGNCTNINKTKWTYNQGVFLGAAAYLYNATNDEQTYLDRAEKLADAAINH 256 (370)
T ss_dssp HHHHHHHHHH-HHB--TTS-B--EE-TTSSS-B-TT---HHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcceeEECCCcEEEeCCccCCCCCcCCCceechHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Confidence 987632 13332210 000111 0112222333456789999999887 9999999999998753
No 10
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=97.77 E-value=8.5e-05 Score=84.36 Aligned_cols=196 Identities=16% Similarity=0.087 Sum_probs=101.3
Q ss_pred hhHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhh-cccccccccccccccccccchHHHHHHHHHHcCCH-----H
Q 002973 234 TIHKILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQN-VITKYSVERHWNSLNEETGGMNDVLYRLYTITQDP-----K 307 (861)
Q Consensus 234 t~HkI~aGLld~y~~tG~~~aL~va~~~ad~~~~r~~~-~~~~~~~~~~~~~l~~E~GGmne~L~~LY~~TGd~-----r 307 (861)
..| ++..++|+++.+|+++..+++.+........... ..... ........-.+=+-.++.++|++||++ +
T Consensus 38 ~a~-~~~~~~d~~~~t~d~~y~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~DD~aw~~la~l~aye~t~~~~~~~~~ 113 (370)
T PF03663_consen 38 QAV-MLSALIDYYRRTGDPTYNDLIQNALLNQRGPNYDSYNPSN---GSGDRYYDDNAWWALALLRAYELTGDQPSDNPK 113 (370)
T ss_dssp HHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTSSS--S---------BHHHHHHHHHHHHHHHHHH--H-----H
T ss_pred HHH-HHHHHHHHHHHhCcchHHHHHHHHHHHHhccccccccccc---ccccCccChHHHHHHHHHHHHHhhCCCcchHHH
Confidence 445 4556889999999999888888777666543311 11100 000000000000236899999999999 9
Q ss_pred HHHHhhhccc---ccccchh-ccc----C----CCCCCCcccCCccchhHHHHHHHhcCCcHHHHHHHHHHHHhhcccee
Q 002973 308 HLLLAHLFDK---PCFLGLL-AVQ----A----DDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGY 375 (861)
Q Consensus 308 yL~lA~~F~~---~~~~~~l-~~~----~----D~l~g~HanthiP~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~y 375 (861)
||++|+...+ ..+.... ..+ . ..-....+.+..|.++.++++|++|||+.|++.|++.|+.+.+.+++
T Consensus 114 yL~~A~~i~~~~~~~wd~~~cgGGi~W~~~~~~~~~~~Kna~sN~~~~~laarL~~~t~~~~Yl~~A~~~~~W~~~~~L~ 193 (370)
T PF03663_consen 114 YLDLAKEIFDFLISGWDDTSCGGGIWWSIDDTNSGYDYKNAISNGPAAQLAARLYRITGDQTYLDWAKKIYDWMRDSGLI 193 (370)
T ss_dssp HHHHHHHHHHHHHHTB-SGG-GS-BEEET----TEEEEEEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHB
T ss_pred HHHHHHHHHHHHHHhcCCccCCCCccccccccCCCCCcccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhcceeE
Confidence 9999987521 1111100 000 0 00000111223344577899999999999999999999999864554
Q ss_pred eecCCCCCCCCCCCcccc-cCCCcCcccchhhHH---HHHHHHhhhcccCCc-hHHHHHHHHHhhhhccc
Q 002973 376 ATGGTSAGEFWSDPKRLA-STLGTENEESCTTYN---MLKVSRHLFRWTKEM-VYADYYERALTNGVLSI 440 (861)
Q Consensus 376 vTGG~g~~E~f~~p~~l~-~~l~~~~~ETCas~n---mlkl~~~Lf~~tgD~-~YaD~~ERaLyN~iLa~ 440 (861)
=. ..+...+ .+. +..-....++-=||| +|.-+..|++.|++. .|.|..++++ |+++..
T Consensus 194 d~-----~~g~v~D-g~~~~~~c~~~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~yl~~A~~la-~~~~~~ 256 (370)
T PF03663_consen 194 DP-----STGLVYD-GINIDGNCTNINKTKWTYNQGVFLGAAAYLYNATNDEQTYLDRAEKLA-DAAINH 256 (370)
T ss_dssp -------TTS-B---EE-TTSSS-B-TT---HHHHHHHHHHHHHHHHHH--H-HHHHHHHHHH-HHHHHH
T ss_pred EC-----CCcEEEe-CCccCCCCCcCCCceechHHHHHHHHHHHHHHhcCCccHHHHHHHHHH-HHHHHH
Confidence 11 0111110 010 000001223333343 567788899999776 9999999987 555554
No 11
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=97.68 E-value=0.0017 Score=72.45 Aligned_cols=231 Identities=16% Similarity=0.083 Sum_probs=131.4
Q ss_pred hhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcCCCccccCCcchhhhhhccCCcccccchhHHHHHHHHHHHHH
Q 002973 169 VGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTF 248 (861)
Q Consensus 169 ~Gh~LsAlA~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~~~~~~~l~~~W~pyYt~HkI~aGLld~y~~ 248 (861)
-|-++.++..+|..|+|+++++.+...++.+...+. . ... -+.+ -+-..++..|+.
T Consensus 27 ~G~~~~gl~~~~~~tgd~~~~~~a~~~~~~~~~~~~--~-----~~~----------~d~~-------~~g~~~~~~y~~ 82 (336)
T PF07470_consen 27 NGVFWYGLLEAYEYTGDERYLDYAERWADRFIEEDG--S-----DYN----------LDDH-------DIGFLLLDLYER 82 (336)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--T-----TTS----------CCGT-------THHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhccC--C-----ccC----------Cchh-------hhHHHHHHHHHH
Confidence 477888888999999999999999999998887776 2 000 0111 122233578999
Q ss_pred cCChhHHHHHHHHHHHHHHHhhhcc-cccc---cccccccccccccchH-HHHHHHHHHcCCHHHHHHhhhccc---ccc
Q 002973 249 ADNTQALKMTKWMVEYFYNRVQNVI-TKYS---VERHWNSLNEETGGMN-DVLYRLYTITQDPKHLLLAHLFDK---PCF 320 (861)
Q Consensus 249 tG~~~aL~va~~~ad~~~~r~~~~~-~~~~---~~~~~~~l~~E~GGmn-e~L~~LY~~TGd~ryL~lA~~F~~---~~~ 320 (861)
||+++.++++.+.++++.++..+.. ..+. ....+..+..- .|+ ..|++++++|||++|++.|..-.+ ...
T Consensus 83 t~d~~y~~~~~~~a~~~l~~~~~~~~G~~~~~~~~~~~~wiD~~--~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~~~~ 160 (336)
T PF07470_consen 83 TGDEKYKDAAIQAADWLLARRPRTSDGGFWHNRPYPNQVWIDGM--YMNLPFLAWAGKLTGDPKYLDEAVRQFRLTRKYL 160 (336)
T ss_dssp H-THHHHHHHHHHHHHHHHTSCBECTGCBECTTTSTTEEETTHH--HHHHHHHHHHHHHHTGHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCceeeccc--cccHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhc
Confidence 9999999999999998876553311 1110 00111111111 144 688999999999999998864311 112
Q ss_pred cchhcccCCCCCCCcccCCc---c------------chhHHHHHHHhcCC-----cHHHHHHHHHHHHhhccceeeecCC
Q 002973 321 LGLLAVQADDISGFHANTHI---P------------VVIGSQMRYEVTGD-----PLYKVTGTFFMDIVNASHGYATGGT 380 (861)
Q Consensus 321 ~~~l~~~~D~l~g~Hanthi---P------------~~~G~a~~Y~~TGD-----~~y~~aa~~fwd~V~~~h~yvTGG~ 380 (861)
+++. +.+ -.|..++. + .+.|.++.|+...+ +.+++.++.+.+.+.+.+- ..|..
T Consensus 161 ~d~~----tGl-~~h~~~~~~~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~-~~G~w 234 (336)
T PF07470_consen 161 YDPE----TGL-YYHGYTYQGYADWSDSFWSRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQD-EDGLW 234 (336)
T ss_dssp B-TT----TSS-BESEEETTSSSTTST--BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTST-TTSBE
T ss_pred cCCC----CCc-eeeccCCCCCcCcccccCcchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCC-CCCCc
Confidence 2221 111 01221111 1 24678888988644 5667777777777665332 22211
Q ss_pred CCCCCCCCCcccccCCCcCcccchhh----HHHHHHHHhhhcccCCchHHHHHHHHHhhhhccc-cc
Q 002973 381 SAGEFWSDPKRLASTLGTENEESCTT----YNMLKVSRHLFRWTKEMVYADYYERALTNGVLSI-QR 442 (861)
Q Consensus 381 g~~E~f~~p~~l~~~l~~~~~ETCas----~nmlkl~~~Lf~~tgD~~YaD~~ERaLyN~iLa~-q~ 442 (861)
. -.|.+| . +..+.||.+| +.+++-.+ ..+..+.+|.+.+||++ ++++.. .+
T Consensus 235 ~--~~~~~~----~--~~~~~etSatA~~a~~l~~gi~--~g~~d~~~y~~~a~~a~-~~l~~~~~~ 290 (336)
T PF07470_consen 235 Y--QDLDDP----D--PGNYRETSATAMFAYGLLRGIR--LGLLDPEEYRPAAEKAL-EALLSNAID 290 (336)
T ss_dssp B--SBTTTT----T--TTS-BEHHHHHHHHHHHHHHHH--TTSSTHHHHHHHHHHHH-HHHHHCEB-
T ss_pred c--eecCCC----C--CCCcccHHHHHHHHHHHHHHHH--cCCCccHHHHHHHHHHH-HHHHhCccC
Confidence 1 112121 1 2345666665 44443111 23344678999999987 777777 44
No 12
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=97.59 E-value=0.0014 Score=72.08 Aligned_cols=183 Identities=15% Similarity=0.026 Sum_probs=113.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcCCCccccCCcchhhhhhccCCcccccchhHHHHHHHHHHHHHcCC
Q 002973 172 YLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADN 251 (861)
Q Consensus 172 ~LsAlA~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~~~~~~~l~~~W~pyYt~HkI~aGLld~y~~tG~ 251 (861)
.+-++...+.. +|+++.+.+.++++.|.+......+ +. .++.. ......+..=+++ |...|+..|+.||+
T Consensus 88 ~~~~ll~l~~~-~~~~~l~~a~~~~~~l~~~~~~~~~-~~-~~~~~-----~~~~~G~~hG~aG--i~~~L~~l~~~t~d 157 (321)
T cd04791 88 IGLALLYFART-GDPALLEAAAKIAELLAEALERGDP-AL-LWPDF-----DRVDHGLLHGWAG--IALFLLRLYKATGD 157 (321)
T ss_pred HHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhhcccc-cc-ccccC-----CCCCCccccCcHH--HHHHHHHHHHHHCC
Confidence 45556666777 9999999999999999876542111 11 11000 0001112211233 66678899999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhcccccc--ccccccccccccc--chHHHHHHHHHHcCCHHHHHHhhhcccccccchhccc
Q 002973 252 TQALKMTKWMVEYFYNRVQNVITKYS--VERHWNSLNEETG--GMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQ 327 (861)
Q Consensus 252 ~~aL~va~~~ad~~~~r~~~~~~~~~--~~~~~~~l~~E~G--Gmne~L~~LY~~TGd~ryL~lA~~F~~~~~~~~l~~~ 327 (861)
++.++.+.+..+++.+.+.+...+.. .+.......--+| ||..++.+||+.|+|++|++.|+...+...-. .
T Consensus 158 ~~~l~~A~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~wchG~aGi~~~l~~l~~~~~d~~~~~~a~~~~~~~~~~----~ 233 (321)
T cd04791 158 SRYLELAEEALDKELARAVVDDGGLLQVDEGARLLPYLCSGSAGLGLLMLRLEAITGDKRWRDEADGIAHAALSS----C 233 (321)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCceEcCCCCccCcccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhh----h
Confidence 99999999999999877643111110 0000000111133 78899999999999999999998764321100 0
Q ss_pred CCCCCCCcccCCccchhH--HHHHHHhcCCcHHHHHHHHHHHHhhcc
Q 002973 328 ADDISGFHANTHIPVVIG--SQMRYEVTGDPLYKVTGTFFMDIVNAS 372 (861)
Q Consensus 328 ~D~l~g~HanthiP~~~G--~a~~Y~~TGD~~y~~aa~~fwd~V~~~ 372 (861)
...+...|...-++ ....++.++|+.|++.+.++.+.+..+
T Consensus 234 ----~~~~~lchG~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (321)
T cd04791 234 ----YANPGLFSGTAGLGAHLNDLAAEGDNALYKAAAERLALYLIAT 276 (321)
T ss_pred ----ccCccccCCcHhHHHHHHhhcccccChHHHHHHHHHHHHhccc
Confidence 01123445554333 345578999999999999988877643
No 13
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=97.55 E-value=0.004 Score=68.50 Aligned_cols=177 Identities=14% Similarity=-0.005 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhhccc--cccccc--ccccccccccchHHHHHHHHHHcCCHHHHHHhh
Q 002973 238 ILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVIT--KYSVER--HWNSLNEETGGMNDVLYRLYTITQDPKHLLLAH 313 (861)
Q Consensus 238 I~aGLld~y~~tG~~~aL~va~~~ad~~~~r~~~~~~--~~~~~~--~~~~l~~E~GGmne~L~~LY~~TGd~ryL~lA~ 313 (861)
++..|+..|+. ++++.++++.+.++++.+...+.-. .+.... .....|. ..|+..+|.+||+.|||++|++.|+
T Consensus 88 ~~~~ll~l~~~-~~~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~hG-~aGi~~~L~~l~~~t~d~~~l~~A~ 165 (321)
T cd04791 88 IGLALLYFART-GDPALLEAAAKIAELLAEALERGDPALLWPDFDRVDHGLLHG-WAGIALFLLRLYKATGDSRYLELAE 165 (321)
T ss_pred HHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhhccccccccccCCCCCCccccC-cHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 45566778888 9999999999999999875432100 000000 0011122 2268899999999999999999998
Q ss_pred hcccc---cccchhccc----CCCCCCCcccCCccch--hHHHHHHHhcCCcHHHHHHHHHHHHhhccceeeecCCCCCC
Q 002973 314 LFDKP---CFLGLLAVQ----ADDISGFHANTHIPVV--IGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSAGE 384 (861)
Q Consensus 314 ~F~~~---~~~~~l~~~----~D~l~g~HanthiP~~--~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~yvTGG~g~~E 384 (861)
...+. .+.. ...+ .+.-....+-.|...- ....+.|++|+|++|++.++...+.+.+.-
T Consensus 166 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~wchG~aGi~~~l~~l~~~~~d~~~~~~a~~~~~~~~~~~----------- 233 (321)
T cd04791 166 EALDKELARAVV-DDGGLLQVDEGARLLPYLCSGSAGLGLLMLRLEAITGDKRWRDEADGIAHAALSSC----------- 233 (321)
T ss_pred HHHHHHHHhhcc-CCCCceEcCCCCccCcccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh-----------
Confidence 65321 1110 0000 0000001112333322 334667999999999999999888876321
Q ss_pred CCCCCcccccCCCcCcccchhhHHHHHHHHhhhcccCCchHHHHHHHHHhhhhcccc
Q 002973 385 FWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTNGVLSIQ 441 (861)
Q Consensus 385 ~f~~p~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgD~~YaD~~ERaLyN~iLa~q 441 (861)
+ ...+=.|.+.+.+.+...+.+.++|.+|.+..++.. ..++..-
T Consensus 234 -~-----------~~~~lchG~~G~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 277 (321)
T cd04791 234 -Y-----------ANPGLFSGTAGLGAHLNDLAAEGDNALYKAAAERLA-LYLIATA 277 (321)
T ss_pred -c-----------cCccccCCcHhHHHHHHhhcccccChHHHHHHHHHH-HHhcccc
Confidence 1 112345777888888888999999999999999865 6776543
No 14
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0062 Score=72.82 Aligned_cols=129 Identities=15% Similarity=0.094 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhhccccccccccccccc-------ccccchHHHHHHHHHHcCCHHHH
Q 002973 237 KILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLN-------EETGGMNDVLYRLYTITQDPKHL 309 (861)
Q Consensus 237 kI~aGLld~y~~tG~~~aL~va~~~ad~~~~r~~~~~~~~~~~~~~~~l~-------~E~GGmne~L~~LY~~TGd~ryL 309 (861)
++.++|..+++++|+++.+++|++.++++.+.+..- .+. +.+.-+. +-+.-+..+|..||++|+|.+||
T Consensus 415 lmi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~--rl~--~~~~~G~a~~~g~leDYA~~i~gll~lye~t~d~~yL 490 (667)
T COG1331 415 LMIAALAEAGRVLGDPEYLEAAERAADFILDNLYVD--RLL--RRYRGGEAAVAGLLEDYAFLILGLLALYEATGDLAYL 490 (667)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhccc--chh--eeeecCcccccccchhHHHHHHHHHHHHHhhCcHHHH
Confidence 466788899999999999999999999999766431 110 1111010 11122457999999999999999
Q ss_pred HHhhhcccc---cccchh-------cccCCCC--CCCcccCCccc-----hhHHHHHHHhcCCcHHHHHHHHHHHHh
Q 002973 310 LLAHLFDKP---CFLGLL-------AVQADDI--SGFHANTHIPV-----VIGSQMRYEVTGDPLYKVTGTFFMDIV 369 (861)
Q Consensus 310 ~lA~~F~~~---~~~~~l-------~~~~D~l--~g~HanthiP~-----~~G~a~~Y~~TGD~~y~~aa~~fwd~V 369 (861)
+.|..+.+. .|.++. ....+.+ .....-.-+|- +....++-++|||..|.+.|....+.+
T Consensus 491 ~~A~~L~~~~i~~f~d~~gGf~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~~~y~e~A~~~L~a~ 567 (667)
T COG1331 491 EKAIELADEAIADFWDDEGGFYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTGDARYLEAAEDILQAF 567 (667)
T ss_pred HHHHHHHHHHHHHhcCCCCCcccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHH
Confidence 999877432 122221 0000000 00011122232 234566689999999999887765554
No 15
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.06 E-value=0.0011 Score=76.03 Aligned_cols=124 Identities=14% Similarity=0.113 Sum_probs=85.7
Q ss_pred hhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcCCCccccCCcchhhhhhccCCcccccchhHH-HHHHHHHHHH
Q 002973 169 VGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHK-ILAGLLDQYT 247 (861)
Q Consensus 169 ~Gh~LsAlA~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~~~~~~~l~~~W~pyYt~Hk-I~aGLld~y~ 247 (861)
.||-++|+--.+..|+-..+.+-+-++.|.|+..=. |. .+ =.+.|++|- |..+|++-|+
T Consensus 133 aghLieg~va~~qaTGkr~lldV~~rlADhi~tvfg----------p~---------~~-q~~g~~gH~eielAl~~Ly~ 192 (589)
T COG3533 133 AGHLIEGGVAAHQATGKRRLLDVVCRLADHIATVFG----------PE---------ED-QVPGYCGHPEIELALAELYR 192 (589)
T ss_pred hHHHHhhhhHHHHhhCcchHHHHHHHHHHhhhhhcC----------cc---------cc-ccccccCCCchhHHHHHHHH
Confidence 689999999999999999999999999888866543 10 00 123455554 7888999999
Q ss_pred HcCChhHHHHHHHHHHHHHHHhhhccccccccccccccccccc-chHHHHHHHHHHcCCHHHHHHhhhccc
Q 002973 248 FADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETG-GMNDVLYRLYTITQDPKHLLLAHLFDK 317 (861)
Q Consensus 248 ~tG~~~aL~va~~~ad~~~~r~~~~~~~~~~~~~~~~l~~E~G-Gmne~L~~LY~~TGd~ryL~lA~~F~~ 317 (861)
.||+++.|+++.+|.++--.. +. .+-..|+ ..+|.-+- =....+++||++|||+.+...+.+|.+
T Consensus 193 ~Tg~~rYL~LA~~Fi~~rg~~--P~-~~rg~e~--~~gHAvr~iyl~~G~A~l~~~~gDds~r~~~~~lW~ 258 (589)
T COG3533 193 LTGDQRYLDLARRFIHQRGVE--PL-AQRGDEL--EGGHAVRQIYLYIGAADLAEETGDDSLRQAAEFLWQ 258 (589)
T ss_pred HhcChHHHHHHHHHHHHhccC--hh-hcCchhh--hhhhHHHHHHHhhhHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999988765321 11 1101111 11121000 012578999999999999999998843
No 16
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=97.00 E-value=0.0073 Score=67.63 Aligned_cols=252 Identities=16% Similarity=0.153 Sum_probs=133.6
Q ss_pred chhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhc-CCCccccCCcchhhhhhccCCcccccchhHHHHHHHHHHH
Q 002973 168 FVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKM-GSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQY 246 (861)
Q Consensus 168 ~~Gh~LsAlA~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~-~dGYL~a~~~~~~~~~~~l~~~W~pyYt~HkI~aGLld~y 246 (861)
+.+..|=..|.++. +++++.++.++.-++.|.+.-... ..||.......- .. .. --.-|..--++.|+ +.+
T Consensus 22 ~q~R~~~~fa~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~--~~---~~-~~~~Y~~af~l~al-a~~ 93 (346)
T PF07221_consen 22 VQARQLYTFARAYR-LGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGG--PL---DP-QKDLYDQAFALLAL-AEA 93 (346)
T ss_dssp HHHHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTE--EE---E---EEHHHHHHHHHHH-HHH
T ss_pred eeHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCC--CC---cc-ccchHHHHHHHHHH-HHH
Confidence 35788888888888 889999999999999998776311 345654432110 00 00 01234444466676 458
Q ss_pred HHcCChhHHHHHHHHHHHHHHHhhhcccc-cc--cccccccc--cccccchHHHHHHHHHHcCCHHHHHHhhhccc---c
Q 002973 247 TFADNTQALKMTKWMVEYFYNRVQNVITK-YS--VERHWNSL--NEETGGMNDVLYRLYTITQDPKHLLLAHLFDK---P 318 (861)
Q Consensus 247 ~~tG~~~aL~va~~~ad~~~~r~~~~~~~-~~--~~~~~~~l--~~E~GGmne~L~~LY~~TGd~ryL~lA~~F~~---~ 318 (861)
.+||+++++++|.++.+.+.+++.....+ +. ..+-+... ..-+-=+.+++..||+.|||++|++.|+.+.+ .
T Consensus 94 ~~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~~~~~~r~~n~~mhl~eA~l~l~~~~~~~~~~~~a~~l~~~~~~ 173 (346)
T PF07221_consen 94 RATGDPEALELAEQTLEFLERRFWDPEGGGYRESFDPDWSPPRGQNPHMHLLEAFLALYEATGDPRYLDRAEELLDLFLD 173 (346)
T ss_dssp HCTT-TTHHHHHHHHHHHHHHHTEETTTTEE--EETTTSSCBEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhCChhHHHHHHHHHHHHHHHhcccccCcceeccCCccccCCCCChhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 89999999999999999999887432111 10 00111111 00000024688899999999999999876522 1
Q ss_pred cccchhc------ccCC--CCCC-CcccCCcc--chhHHH-------HHHH---hcCCcHHHHHHHHHHHHhhccceeee
Q 002973 319 CFLGLLA------VQAD--DISG-FHANTHIP--VVIGSQ-------MRYE---VTGDPLYKVTGTFFMDIVNASHGYAT 377 (861)
Q Consensus 319 ~~~~~l~------~~~D--~l~g-~HanthiP--~~~G~a-------~~Y~---~TGD~~y~~aa~~fwd~V~~~h~yvT 377 (861)
.|.++.. ...| .+.+ .+..+-.+ +-.||. ..+. ..+++.+++.+++..+...+.-.-..
T Consensus 174 ~f~~~~~g~~~E~f~~dw~~~~~~~~~d~~~~~~~~pGH~~E~~wll~~~~~~~~~~~~~~~~~a~~l~~~~~~~G~d~~ 253 (346)
T PF07221_consen 174 RFADPESGALPEFFDRDWNPLPDGSGDDTFRGRIVEPGHDFEWAWLLLEAARLTGRGDPDWLERARRLFDFALEHGWDRE 253 (346)
T ss_dssp TCHHCCTTEETSEEETTSEBETTTTTTHSTTTSSB-HHHHHHHHHHHHHHHHHCHCT-HTHHHHHHHHHHHHHHHHBSTT
T ss_pred HHHHhccCeeeeeeccccccccccccccccccCccCCchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHheEecC
Confidence 2222110 0000 0000 00000001 223542 2233 56778888888888877664222222
Q ss_pred cC-CCCCCCCCCCcccccCCCcCcccchhhHHHHHHHHhhhcccCCchHHHHHHHHH
Q 002973 378 GG-TSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERAL 433 (861)
Q Consensus 378 GG-~g~~E~f~~p~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgD~~YaD~~ERaL 433 (861)
|| +-. .. +. .+.......-.=...+.|+-.-.+++.|+|.+|.+.++++.
T Consensus 254 ~gG~~~--~~-d~---~g~~~~~~k~wW~q~Eal~a~~~~~~~tg~~~~~~~~~~~~ 304 (346)
T PF07221_consen 254 GGGLFY--SV-DR---DGKPPDRSKRWWPQAEALKALLAAYELTGDEKYLDWARRVW 304 (346)
T ss_dssp TSSB-S--EE-ET---TS-BSST-EEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred CCeEEE--EE-eC---CCCccccCccccHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 22 210 00 00 00001111111223455666677888999999999988876
No 17
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=96.86 E-value=0.042 Score=65.15 Aligned_cols=125 Identities=20% Similarity=0.242 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcCCCccccCCcchhhhhhccCCcccccchhHHHHHHHHHHHHHcC
Q 002973 171 HYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFAD 250 (861)
Q Consensus 171 h~LsAlA~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~~~~~~~l~~~W~pyYt~HkI~aGLld~y~~tG 250 (861)
--+.+|--+|..--.+++.+.++.+.+.|.-.|. .++.++.|-. ++ .++-|||.+|.++|
T Consensus 113 TlVDSLDTL~IMgl~~Ef~~a~~~V~~~l~f~~~--~~~~vsvFEt-----------------tI-R~LGGLLSAy~Ls~ 172 (522)
T PTZ00470 113 TIIDSLDTLKIMGLKKEYKEGRDWVANNLKQSKD--TGLGVSVFET-----------------TI-RVLGGLLSAYDLTG 172 (522)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCC--CCCeeeeeee-----------------eh-hhHhHHHHHHHHcC
Confidence 3456666655554455555444443332322233 4566665422 11 26789999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhhhcccccc-----------ccccc---ccccccccchHHHHHHHHHHcCCHHHHHHhhhcc
Q 002973 251 NTQALKMTKWMVEYFYNRVQNVITKYS-----------VERHW---NSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFD 316 (861)
Q Consensus 251 ~~~aL~va~~~ad~~~~r~~~~~~~~~-----------~~~~~---~~l~~E~GGmne~L~~LY~~TGd~ryL~lA~~F~ 316 (861)
++..|+.|..+||-+..-|.. ..+.+ ....| ...-.|.|.+..-+..|.++|||++|.+.|++..
T Consensus 173 d~~lL~kA~dLgd~Ll~AFdT-ptgiP~~~vnl~~g~~~~~~~~~~~~~lAe~gSl~LEF~~LS~lTGd~kY~~~a~~i~ 251 (522)
T PTZ00470 173 DEMYLEKAREIADRLLPAFNE-DTGFPASEINLATGRKSYPGWAGGCSILSEVGTLQLEFNYLSEITGDPKYAEYVDKVM 251 (522)
T ss_pred CHHHHHHHHHHHHHHHHhhcC-CCCCCcceeecccCCCCCcccCCCccchhhhhhHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 999999999999999877631 11111 01111 1122477778888999999999999999998763
No 18
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=96.72 E-value=0.065 Score=67.13 Aligned_cols=217 Identities=17% Similarity=0.066 Sum_probs=130.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHHHHhhc-CCCccccCCcchhhhhhccCCcccccchhHHHHHHHHHHHHHcCChh
Q 002973 175 ASAHMWASTHNVTLKEKMTAVVSALSECQNKM-GSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNTQ 253 (861)
Q Consensus 175 AlA~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~-~dGYL~a~~~~~~~~~~~l~~~W~pyYt~HkI~aGLld~y~~tG~~~ 253 (861)
++.+++..++|+.+++.+.++++.+.+..... ..+++++. ++ +...|+..|+.+++++
T Consensus 549 ~L~~l~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~D~~~G~-------------------aG--ii~~Ll~l~~~~~~~~ 607 (825)
T cd04792 549 ALTHLGKLLKDDRLLNLAKEILDLIDELIEKDEKLDFISGA-------------------AG--LILVLLSLYELFLSER 607 (825)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccCCCEeeec-------------------HH--HHHHHHHHHhccCChH
Confidence 34455567899999999999998876654310 11222211 12 4455778899999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccc-ccccccccccccc--chHHHHHHHHHHcCCHHHHHHhhhccc---c-----cccc
Q 002973 254 ALKMTKWMVEYFYNRVQNVITKYS-VERHWNSLNEETG--GMNDVLYRLYTITQDPKHLLLAHLFDK---P-----CFLG 322 (861)
Q Consensus 254 aL~va~~~ad~~~~r~~~~~~~~~-~~~~~~~l~~E~G--Gmne~L~~LY~~TGd~ryL~lA~~F~~---~-----~~~~ 322 (861)
.++++.+.++++.+...+...... .+... ...--+| |+..+|.+||+.|+|++|++.|+...+ . ...|
T Consensus 608 ~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~-~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~~~~~~~~~w 686 (825)
T cd04792 608 FLDLALKCGDHLLENASNEDGGIGPAEQPN-LTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERRLFSEEGWNW 686 (825)
T ss_pred HHHHHHHHHHHHHHhhhhccCCcccccccc-cccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHhhcCC
Confidence 999999999998764322100000 00000 0011233 688999999999999999999876532 1 1112
Q ss_pred hhcccCCCCCCCcccCCccch--hHHHHHHHh--cCCcHHHHHHHHHHHHhhccceeeecCCCCCCCCCCCcccccCCCc
Q 002973 323 LLAVQADDISGFHANTHIPVV--IGSQMRYEV--TGDPLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGT 398 (861)
Q Consensus 323 ~l~~~~D~l~g~HanthiP~~--~G~a~~Y~~--TGD~~y~~aa~~fwd~V~~~h~yvTGG~g~~E~f~~p~~l~~~l~~ 398 (861)
+. .+.-...-+-.|...- ......++. .+|+.+.+.+...-+.+.. + | +. .
T Consensus 687 ~~---~~~~~~~~~WChG~~GI~lal~~~~~~~~~~d~~~~~~i~~~~~~~~~-~----~-------~~----------~ 741 (825)
T cd04792 687 PR---KDGNSFSAAWCHGAPGILLARLELLKFNDLDDEELKEEIEIALKTTLK-E----G-------FG----------N 741 (825)
T ss_pred CC---cCcCCCCCcccCCcHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHH-h----c-------CC----------C
Confidence 10 0000001122355433 334556777 6888888877776665542 1 0 10 1
Q ss_pred CcccchhhHHHHHHHHhhhcccCCchHHHHHHHHHhhhhcc
Q 002973 399 ENEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTNGVLS 439 (861)
Q Consensus 399 ~~~ETCas~nmlkl~~~Lf~~tgD~~YaD~~ERaLyN~iLa 439 (861)
..+=+|...+.+.+...+.+.++|.+|.+.+++.+ +.++.
T Consensus 742 ~~slCHG~~Gil~~ll~~~~~~~~~~~~~~a~~~~-~~l~~ 781 (825)
T cd04792 742 NHSLCHGDLGNLEILLYAAKAFGDEKLQELANSLA-IKVLS 781 (825)
T ss_pred CCeecCCCcchHHHHHHHHHhcCCHHHHHHHHHHH-HHHHH
Confidence 23345777888888888899999999988888765 34443
No 19
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=96.65 E-value=0.14 Score=56.13 Aligned_cols=225 Identities=16% Similarity=0.085 Sum_probs=134.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhh----cCCCccccCCcchhhhhhccCCcccccchhHHHHHHHHHHHHH
Q 002973 173 LSASAHMWASTHNVTLKEKMTAVVSALSECQNK----MGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTF 248 (861)
Q Consensus 173 LsAlA~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~----~~dGYL~a~~~~~~~~~~~l~~~W~pyYt~HkI~aGLld~y~~ 248 (861)
+-++..++..++|+++.+.+.+++..+.+.-.. ...+++... ++ ++..|+..|+.
T Consensus 56 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~G~-------------------aG--~~~~ll~~~~~ 114 (343)
T cd04434 56 AYALAALSKGLGDQELLKELLELLLLLVELILEDLKDLNYDLLSGL-------------------AG--LLLALLLLYKT 114 (343)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhcccCCCCcceeech-------------------HH--HHHHHHHHHHh
Confidence 334555566789999999999998887664320 011111111 12 45566778888
Q ss_pred cCChhHHHHHHHHHHHHHHHhhhccccccc---ccccc-ccccccc--chHHHHHHHHHHcCCHHHHHHhhhccc-----
Q 002973 249 ADNTQALKMTKWMVEYFYNRVQNVITKYSV---ERHWN-SLNEETG--GMNDVLYRLYTITQDPKHLLLAHLFDK----- 317 (861)
Q Consensus 249 tG~~~aL~va~~~ad~~~~r~~~~~~~~~~---~~~~~-~l~~E~G--Gmne~L~~LY~~TGd~ryL~lA~~F~~----- 317 (861)
++++..++++.+.++++.+...+....... ..... ...--+| |+..+|..+|+.+.++.+.++++....
T Consensus 115 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~HG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (343)
T cd04434 115 FGEEIFLELIRKILDYLLELGKNGDGKIRWPMYFPEGRVNLGLAHGLAGILLALLLLYKKTVDKSLEALIKALLKYERRL 194 (343)
T ss_pred cCCcCHHHHHHHHHHHHHHhhhhccCCCceeeeccCCccccchhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHc
Confidence 899999999999999998755432111100 00000 0111223 688999999999988888887655421
Q ss_pred ---c-cccchhcccCCCCCCCcccCCcc--chhHHHHHHHhcCCcHHHHHHHHHHHHhhccceeeecCCCCCCCCCCCcc
Q 002973 318 ---P-CFLGLLAVQADDISGFHANTHIP--VVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKR 391 (861)
Q Consensus 318 ---~-~~~~~l~~~~D~l~g~HanthiP--~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~yvTGG~g~~E~f~~p~~ 391 (861)
. ...++. ...+.......-.|.. ++......|+.++|+.+.+.++...+.+.++... +
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~------- 258 (343)
T cd04434 195 QDDSGGFWWPS-RSNGGNRFLVAWCHGAPGILLALLLAYKALGDDKYDEAAEKALELAWKRGLL--------E------- 258 (343)
T ss_pred cCCCCCCCCCC-CCCCCccccceecCCChhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhhc--------c-------
Confidence 1 111110 0000111111223444 2344567799999999998888777766542210 0
Q ss_pred cccCCCcCcccchhhHHHHHHHHhhhcccCCchHHHHHHHHHhhhhccc
Q 002973 392 LASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTNGVLSI 440 (861)
Q Consensus 392 l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgD~~YaD~~ERaLyN~iLa~ 440 (861)
....+=.|...+.+....+|...+++.+|.+..++.. +.++..
T Consensus 259 -----~~~~~lChG~~G~~~~ll~l~~~~~~~~~~~~a~~~~-~~~~~~ 301 (343)
T cd04434 259 -----LKNPGLCHGIAGNLLILLLLYKLTGDLKFLARALALA-LLLISH 301 (343)
T ss_pred -----CCCCCcCcCccchHHHHHHHHHHhCCHHHHHHHHHHH-HHHHHH
Confidence 1234455777888889999999999999998876654 455543
No 20
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=96.62 E-value=0.021 Score=64.04 Aligned_cols=184 Identities=23% Similarity=0.252 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhc-CCCccccCCcchhhhhhccCCcccc----cchhHHHHHHHHHH
Q 002973 171 HYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKM-GSGYLSAFPSEQFDRFEALKPVWAP----YYTIHKILAGLLDQ 245 (861)
Q Consensus 171 h~LsAlA~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~-~dGYL~a~~~~~~~~~~~l~~~W~p----yYt~HkI~aGLld~ 245 (861)
-.|-|+|. +..++|++.++.++++++.|.+.-... ..||...++. .|.+ .-.+|.+.+ +++.
T Consensus 85 f~l~ala~-~~~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~-----------~~~~~r~~n~~mhl~eA-~l~l 151 (346)
T PF07221_consen 85 FALLALAE-ARATGDPEALELAEQTLEFLERRFWDPEGGGYRESFDP-----------DWSPPRGQNPHMHLLEA-FLAL 151 (346)
T ss_dssp HHHHHHHH-HHCTT-TTHHHHHHHHHHHHHHHTEETTTTEE--EETT-----------TSSCBEEHHHHHHHHHH-HHHH
T ss_pred HHHHHHHH-HHHhCChhHHHHHHHHHHHHHHHhcccccCcceeccCC-----------ccccCCCCChhHHHHHH-HHHH
Confidence 35777788 678999999999999999987775311 2344433321 1222 122576765 4689
Q ss_pred HHHcCChhHHHHHHHHHHHHHHHhhhcccccccc---ccccccc------------ccccchHH---HHHHHH--HHcCC
Q 002973 246 YTFADNTQALKMTKWMVEYFYNRVQNVITKYSVE---RHWNSLN------------EETGGMND---VLYRLY--TITQD 305 (861)
Q Consensus 246 y~~tG~~~aL~va~~~ad~~~~r~~~~~~~~~~~---~~~~~l~------------~E~GGmne---~L~~LY--~~TGd 305 (861)
|+++|+++.++.+.++++.+.+++-..-.+...+ ..|.+.. .|.|=+-| -|.++. ...++
T Consensus 152 ~~~~~~~~~~~~a~~l~~~~~~~f~~~~~g~~~E~f~~dw~~~~~~~~~d~~~~~~~~pGH~~E~~wll~~~~~~~~~~~ 231 (346)
T PF07221_consen 152 YEATGDPRYLDRAEELLDLFLDRFADPESGALPEFFDRDWNPLPDGSGDDTFRGRIVEPGHDFEWAWLLLEAARLTGRGD 231 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHCCTTEETSEEETTSEBETTTTTTHSTTTSSB-HHHHHHHHHHHHHHHHHCHCT-
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHHHhccCeeeeeeccccccccccccccccccCccCCchhHHHHHHHHHHHHhccccc
Confidence 9999999999999999999987663211111111 1122211 22332223 344444 34588
Q ss_pred HHHHHHhhhcccccccchhcccCCCCC-CC----cccCCc--------cc---hhHHHHHHHhcCCcHHHHHHHHHHHHh
Q 002973 306 PKHLLLAHLFDKPCFLGLLAVQADDIS-GF----HANTHI--------PV---VIGSQMRYEVTGDPLYKVTGTFFMDIV 369 (861)
Q Consensus 306 ~ryL~lA~~F~~~~~~~~l~~~~D~l~-g~----Hanthi--------P~---~~G~a~~Y~~TGD~~y~~aa~~fwd~V 369 (861)
+++++.|..+....+ ..+-|.-. ++ ..+.+. |. +.+.+..|+.|||+.|++.++..|+.+
T Consensus 232 ~~~~~~a~~l~~~~~----~~G~d~~~gG~~~~~d~~g~~~~~~k~wW~q~Eal~a~~~~~~~tg~~~~~~~~~~~~~~~ 307 (346)
T PF07221_consen 232 PDWLERARRLFDFAL----EHGWDREGGGLFYSVDRDGKPPDRSKRWWPQAEALKALLAAYELTGDEKYLDWARRVWDYI 307 (346)
T ss_dssp HTHHHHHHHHHHHHH----HHHBSTTTSSB-SEEETTS-BSST-EEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HheEecCCCeEEEEEeCCCCccccCccccHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 899988866522111 00001000 00 111121 21 367888999999999999999999988
Q ss_pred hc
Q 002973 370 NA 371 (861)
Q Consensus 370 ~~ 371 (861)
.+
T Consensus 308 ~~ 309 (346)
T PF07221_consen 308 FR 309 (346)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 21
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=95.72 E-value=0.3 Score=54.83 Aligned_cols=193 Identities=15% Similarity=0.061 Sum_probs=111.4
Q ss_pred hhHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHHHhhcCCCccccCCcchhhhhhcc-CCcccccchhHHHHHHHHHHH
Q 002973 169 VGHYLSASAHMWASTHN-VTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEAL-KPVWAPYYTIHKILAGLLDQY 246 (861)
Q Consensus 169 ~Gh~LsAlA~~~a~t~D-~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~~~~~~~l-~~~W~pyYt~HkI~aGLld~y 246 (861)
..=+|.++...+..+++ +.+.+.++.+++.+.+.-+...+......+. .+ .|... .-.|+-=.++ |...|+..+
T Consensus 103 ~aG~l~~Ll~l~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~-~~-~~~~~~~~G~aHG~aG--I~~~L~~~~ 178 (343)
T cd04794 103 RAGYLYALLFLNKKFGFKKIPSSLIKSICDAILESGRTGAAKYRAPCPL-MY-EWHGKEYLGAAHGLAG--ILYILLQTP 178 (343)
T ss_pred HHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHhhhccCCCCCc-cc-cccCceecchhhhHHH--HHHHHHhhh
Confidence 34467778788888874 4577788888887665422112222111110 00 01100 0112111122 556677888
Q ss_pred HHcCChhHHHHHHHHHHHHHHHhhhccccccc--cc--cccccccccc--chHHHHHHHHHHcCCHHHHHHhhhcccccc
Q 002973 247 TFADNTQALKMTKWMVEYFYNRVQNVITKYSV--ER--HWNSLNEETG--GMNDVLYRLYTITQDPKHLLLAHLFDKPCF 320 (861)
Q Consensus 247 ~~tG~~~aL~va~~~ad~~~~r~~~~~~~~~~--~~--~~~~l~~E~G--Gmne~L~~LY~~TGd~ryL~lA~~F~~~~~ 320 (861)
..+++++.++.+.+..+|+.+...+. ..++. .. .....+--+| |+..++..+|+.++|+++.+.|+.-.+..
T Consensus 179 ~~~~~~~~~~~i~~~i~~~~~~~~~~-g~w~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~- 256 (343)
T cd04794 179 LFLLKPSLAPLIKRSLDYLLSLQFPS-GNFPSSLGNRKRDRLVQWCHGAPGIVYLLAKAYLVFKEEQYLEAAIKCGELI- 256 (343)
T ss_pred hhcCCccHHHHHHHHHHHHHHhhccC-CCCCCccCCCCCCccccccCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHH-
Confidence 88899999999999999998653210 00100 00 0000111234 68899999999999999999887753321
Q ss_pred cchhcccCCCCCCCcccCCcc--chhHHHHHHHhcCCcHHHHHHHHHHHHhhcc
Q 002973 321 LGLLAVQADDISGFHANTHIP--VVIGSQMRYEVTGDPLYKVTGTFFMDIVNAS 372 (861)
Q Consensus 321 ~~~l~~~~D~l~g~HanthiP--~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~ 372 (861)
+. ...+..-+..-|.- +..+..+.|+.|+|+.|++.|..+.+.+.++
T Consensus 257 -~~----~g~~~~~~~lCHG~~G~~~~lL~~~~~~~~~~~~~~a~~~~~~~~~~ 305 (343)
T cd04794 257 -WK----RGLLKKGPGLCHGIAGNAYAFLLLYRLTGDLKYLYRACKFAEFLINY 305 (343)
T ss_pred -HH----hCCccCCCccccCccchHHHHHHHHHHhCcHHHHHHHHHHHHHHhcc
Confidence 10 00111012233443 3455788899999999999999999988754
No 22
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=95.62 E-value=0.12 Score=53.56 Aligned_cols=140 Identities=18% Similarity=0.250 Sum_probs=89.5
Q ss_pred chhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcCCCccccCCc--chhhhhhccCCcccccchhHHH-HHHHHH
Q 002973 168 FVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPS--EQFDRFEALKPVWAPYYTIHKI-LAGLLD 244 (861)
Q Consensus 168 ~~Gh~LsAlA~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~--~~~~~~~~l~~~W~pyYt~HkI-~aGLld 244 (861)
.-|+-||.++.+|..|+|++..+.+++.++-+..--+ ..|-+..+.. .+++++....... -.++|.. +.||-|
T Consensus 31 aQG~a~s~l~RAy~~t~d~~Yl~aA~~al~~f~~~~~--~GG~~~~~~~~~~wyeEYp~~p~s~--VLNGfiysL~GLyd 106 (189)
T PF06662_consen 31 AQGQAISVLARAYQLTGDEKYLDAAKKALNSFKVPVE--EGGVLATFKNKYPWYEEYPTTPPSY--VLNGFIYSLIGLYD 106 (189)
T ss_pred HHHHHHHHHHHHHHhHCCHHHHHHHHHHHHHhcChHh--hCCeeEEecCCcEeEeecCCCCCCE--EeehHHHHHHHHHH
Confidence 3499999999999999999999999998887655544 4454443322 1222222111211 2356655 789999
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHhhhcccccccccccc--cc-cc------------cccchHHHHHHHHHHcCCHHHH
Q 002973 245 QYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWN--SL-NE------------ETGGMNDVLYRLYTITQDPKHL 309 (861)
Q Consensus 245 ~y~~tG~~~aL~va~~~ad~~~~r~~~~~~~~~~~~~~~--~l-~~------------E~GGmne~L~~LY~~TGd~ryL 309 (861)
.+..+++++|.++-.+-.+=+.+.+.. ++. ..|. .+ |- -+.....-|.+||.+|||+.+.
T Consensus 107 ~~~~~~~~~A~~lf~~Gl~sLk~~Lp~----yD~-G~wS~Ydl~h~~~~~~~~~a~~~YH~lHi~qL~~L~~it~d~~f~ 181 (189)
T PF06662_consen 107 YYRLTGDEEAKELFDKGLKSLKKMLPL----YDT-GSWSRYDLRHFTLGNAPNIARWDYHRLHIQQLKWLYSITGDPIFK 181 (189)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHh----hhc-CCCchhhccccccccCcCcCcchHHHHHHHHHHHHHHhcCCHHHH
Confidence 999999999888877666655544321 111 1111 11 00 0111235688999999999999
Q ss_pred HHhhhcc
Q 002973 310 LLAHLFD 316 (861)
Q Consensus 310 ~lA~~F~ 316 (861)
+.|+++.
T Consensus 182 ~~a~rW~ 188 (189)
T PF06662_consen 182 EYAERWK 188 (189)
T ss_pred HHHHHhc
Confidence 9999874
No 23
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=95.56 E-value=0.48 Score=53.18 Aligned_cols=225 Identities=12% Similarity=-0.030 Sum_probs=122.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHH-HhhcCCCccccCCcchhhhhhccCCcccccchhHHHHHHHHHHHHHcC
Q 002973 172 YLSASAHMWASTHNVTLKEKMTAVVSALSEC-QNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFAD 250 (861)
Q Consensus 172 ~LsAlA~~~a~t~D~~L~~k~d~~Vd~L~~~-Q~~~~dGYL~a~~~~~~~~~~~l~~~W~pyYt~HkI~aGLld~y~~tG 250 (861)
.+-++...+..++|+++.+.+.+.++.+.+. .....++. ....+..=-++..|+..|+.++
T Consensus 57 i~~~l~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~d~l~G~aG~l~~Ll~l~~~~~ 118 (343)
T cd04794 57 VYAVGAAVYHYLKDEDEVDEFLSKFLQLLESVVSPDSGLP------------------DELLYGRAGYLYALLFLNKKFG 118 (343)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhcccCCc------------------hhhhccHHHHHHHHHHHHHHcC
Confidence 3445666777899999998888888877543 22001110 0111111114556778888888
Q ss_pred C-hhHHHHHHHHHHHHHHHhhhccccc--ccccccc-----ccccccc--chHHHHHHHHHHcCCHHHHHHhhhccc---
Q 002973 251 N-TQALKMTKWMVEYFYNRVQNVITKY--SVERHWN-----SLNEETG--GMNDVLYRLYTITQDPKHLLLAHLFDK--- 317 (861)
Q Consensus 251 ~-~~aL~va~~~ad~~~~r~~~~~~~~--~~~~~~~-----~l~~E~G--Gmne~L~~LY~~TGd~ryL~lA~~F~~--- 317 (861)
+ +.+++.+.+.++.+.+......... ....+|. .+.--+| |+..+|..+|..++++++++.++...+
T Consensus 119 ~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGI~~~L~~~~~~~~~~~~~~~i~~~i~~~~ 198 (343)
T cd04794 119 FKKIPSSLIKSICDAILESGRTGAAKYRAPCPLMYEWHGKEYLGAAHGLAGILYILLQTPLFLLKPSLAPLIKRSLDYLL 198 (343)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhhhccCCCCCccccccCceecchhhhHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHH
Confidence 3 3455666666665443211110000 0000110 0111223 677899999999999999998875421
Q ss_pred ----ccccchhcccCCCCCCCcccCCcc--chhHHHHHHHhcCCcHHHHHHHHHHHHhhccceeeecCCCCCCCCCCCcc
Q 002973 318 ----PCFLGLLAVQADDISGFHANTHIP--VVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKR 391 (861)
Q Consensus 318 ----~~~~~~l~~~~D~l~g~HanthiP--~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~yvTGG~g~~E~f~~p~~ 391 (861)
+.-.||...+.+.-....+-.|.. ++......|++++|+.+++.++..-+.+.++..
T Consensus 199 ~~~~~~g~w~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~----------------- 261 (343)
T cd04794 199 SLQFPSGNFPSSLGNRKRDRLVQWCHGAPGIVYLLAKAYLVFKEEQYLEAAIKCGELIWKRGL----------------- 261 (343)
T ss_pred HhhccCCCCCCccCCCCCCccccccCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC-----------------
Confidence 111122111110000011123444 233456778999999999988887666543210
Q ss_pred cccCCCcCcccchhhHHHHHHHHhhhcccCCchHHHHHHHHHhh
Q 002973 392 LASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTN 435 (861)
Q Consensus 392 l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgD~~YaD~~ERaLyN 435 (861)
. ....+=.|...+.+...-+|++.++|.+|.+...+.+=.
T Consensus 262 -~---~~~~~lCHG~~G~~~~lL~~~~~~~~~~~~~~a~~~~~~ 301 (343)
T cd04794 262 -L---KKGPGLCHGIAGNAYAFLLLYRLTGDLKYLYRACKFAEF 301 (343)
T ss_pred -c---cCCCccccCccchHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 0 011233455556667777899999999999987766533
No 24
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=95.56 E-value=0.43 Score=52.31 Aligned_cols=188 Identities=14% Similarity=-0.005 Sum_probs=109.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcCCCccccCCcchhhhhhccCCcccccchhHHHHHHHHHHHHHcCC
Q 002973 172 YLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADN 251 (861)
Q Consensus 172 ~LsAlA~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~~~~~~~l~~~W~pyYt~HkI~aGLld~y~~tG~ 251 (861)
.+-++...+..++|+...+.+..+++.|.+.+....+++-..... . . ....-.|+-=..+ |...|+..++.+.+
T Consensus 104 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~-~--~~~~~g~~HG~~G--i~~~l~~~~~~~~~ 177 (343)
T cd04434 104 LLLALLLLYKTFGEEIFLELIRKILDYLLELGKNGDGKIRWPMYF-P-E--GRVNLGLAHGLAG--ILLALLLLYKKTVD 177 (343)
T ss_pred HHHHHHHHHHhcCCcCHHHHHHHHHHHHHHhhhhccCCCceeeec-c-C--CccccchhhhhHH--HHHHHHHHHHhcCC
Confidence 444555666678899999999999999999887444443211000 0 0 0001112211122 56667778888888
Q ss_pred hhHHHHHHHHHHHHHHHhhhcccccc----ccccccccccccc--chHHHHHHHHHHcCCHHHHHHhhhcccccccchhc
Q 002973 252 TQALKMTKWMVEYFYNRVQNVITKYS----VERHWNSLNEETG--GMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLA 325 (861)
Q Consensus 252 ~~aL~va~~~ad~~~~r~~~~~~~~~----~~~~~~~l~~E~G--Gmne~L~~LY~~TGd~ryL~lA~~F~~~~~~~~l~ 325 (861)
++..+++.....+..+.....-..+. .........--+| |+..++.++|+.|+|+++++.++...+...-...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 256 (343)
T cd04434 178 KSLEALIKALLKYERRLQDDSGGFWWPSRSNGGNRFLVAWCHGAPGILLALLLAYKALGDDKYDEAAEKALELAWKRGL- 256 (343)
T ss_pred hhHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCccccceecCCChhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhh-
Confidence 88888887777776544321100000 0000000111233 7889999999999999999998765332111000
Q ss_pred ccCCCCCCCcccCCccc--hhHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 002973 326 VQADDISGFHANTHIPV--VIGSQMRYEVTGDPLYKVTGTFFMDIVN 370 (861)
Q Consensus 326 ~~~D~l~g~HanthiP~--~~G~a~~Y~~TGD~~y~~aa~~fwd~V~ 370 (861)
.+ ...+..-|... .......|+.|+|+.+++.+..+.+.+.
T Consensus 257 --~~--~~~~~lChG~~G~~~~ll~l~~~~~~~~~~~~a~~~~~~~~ 299 (343)
T cd04434 257 --LE--LKNPGLCHGIAGNLLILLLLYKLTGDLKFLARALALALLLI 299 (343)
T ss_pred --cc--CCCCCcCcCccchHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 00 11233445553 3446777999999999998887776654
No 25
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=95.43 E-value=0.098 Score=61.26 Aligned_cols=195 Identities=19% Similarity=0.170 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHc--CChhHHHHHHHHHHHHHHHhhhccccccc----------ccccc--cccccccchHHHHHHHHHHc
Q 002973 238 ILAGLLDQYTFA--DNTQALKMTKWMVEYFYNRVQNVITKYSV----------ERHWN--SLNEETGGMNDVLYRLYTIT 303 (861)
Q Consensus 238 I~aGLld~y~~t--G~~~aL~va~~~ad~~~~r~~~~~~~~~~----------~~~~~--~l~~E~GGmne~L~~LY~~T 303 (861)
++.|||.+|.++ +++..|+.|+.+||.+..-|.. ..+.+. .++.. ..-.|.|.+..-+.+|.++|
T Consensus 82 ~lGgLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~t-~~g~P~~~~n~~~~~~~~~~~~~~~la~~gs~~lEf~~LS~lT 160 (452)
T PF01532_consen 82 VLGGLLSAYDLSGEGDPILLSKAVELADRLLPAFDT-PTGIPYPRVNLRTGGKNRWPGGESSLAEAGSLQLEFTRLSQLT 160 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSS-SSS---SEEETTTCEEETTCCGEEEHHHHCSSHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHhccchHHHHHHHHHHHHHHHhccC-CCccccceeeecccCCCCCCCCcccccccccceechhHHHHHh
Confidence 688999999999 9999999999999998876642 111111 01111 11146677888899999999
Q ss_pred CCHHHHHHhhhcccc-------c-ccchhcccCCCCCCCcccCCccc-------hhHHHHHHHhcC--CcHHHHHHHHHH
Q 002973 304 QDPKHLLLAHLFDKP-------C-FLGLLAVQADDISGFHANTHIPV-------VIGSQMRYEVTG--DPLYKVTGTFFM 366 (861)
Q Consensus 304 Gd~ryL~lA~~F~~~-------~-~~~~l~~~~D~l~g~HanthiP~-------~~G~a~~Y~~TG--D~~y~~aa~~fw 366 (861)
||++|.+.|++..+. . +.+.....-|...+.....++-+ .+-..+.|.++| |+.|++.-....
T Consensus 161 gd~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~g~~~~~~~~~Ga~~DS~YEYLlK~~lL~g~~d~~~~~~~~~a~ 240 (452)
T PF01532_consen 161 GDPKYFDAADRIYDALWRSQNRSKIPGLFPNFIDPSTGKWTSSSISLGAGGDSFYEYLLKMYLLLGGTDEQYRDMYDEAV 240 (452)
T ss_dssp S-THHHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTTS-BSSTEE-SSTTTHHHHHHHHHHHHHTTTTTHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHhhhccCCcccCcceecCCcCcccccccccCCCcchHHHhhhhhhhhcCccchHHHHHHHHHH
Confidence 999999999876321 0 11100000111111111111111 122678889999 889988888888
Q ss_pred HHhhccceeeecCCCCCC--CCCCCcc--ccc-CCCcCcccchhhHHHHHHHHhhhcccCCchHHHHHHHHHhhhh
Q 002973 367 DIVNASHGYATGGTSAGE--FWSDPKR--LAS-TLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTNGV 437 (861)
Q Consensus 367 d~V~~~h~yvTGG~g~~E--~f~~p~~--l~~-~l~~~~~ETCas~nmlkl~~~Lf~~tgD~~YaD~~ERaLyN~i 437 (861)
+.+.+ |+...-..-..+ .|-.... ... ..+....=+|-.-+|+.+..+++ ++.++.+..++......
T Consensus 241 ~~i~~-~Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l~Lg~~~~---~~~~~~~~A~~l~~~C~ 312 (452)
T PF01532_consen 241 DAIKK-HLLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGMLALGAKLF---NDEGDLELAEELTETCY 312 (452)
T ss_dssp HHHHH-HTEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGGHHHHHHHHHHTT---TCHHHHHHHHHHHHHHH
T ss_pred HHHHH-HhhccCCCCCccceeEeeeeecccCccccccccchhhcchhHHHHhhccc---CchhHHHHHHHHHHHHH
Confidence 88764 443332211111 1111000 000 11345667899999999999988 44666666666554444
No 26
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=95.30 E-value=0.73 Score=57.87 Aligned_cols=215 Identities=16% Similarity=0.195 Sum_probs=120.2
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHHHhhc-----CCCccccCCcchhhhhhccCCcccccchhHHHHHHHHHHHHHcCCh
Q 002973 178 HMWASTHNVTLKEKMTAVVSALSECQNKM-----GSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNT 252 (861)
Q Consensus 178 ~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~-----~dGYL~a~~~~~~~~~~~l~~~W~pyYt~HkI~aGLld~y~~tG~~ 252 (861)
+.+..|+|+.+++.+.++++.+.+.-+.. +.|.+... --|...|+..|..++++
T Consensus 502 ~l~~~t~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~gl~~G~---------------------aGi~~~L~~l~~~~~~~ 560 (825)
T cd04792 502 YLGQLTGDERYTRLARKILDSLVKSLSELKTDDTGIGAFSGL---------------------GGILYALTHLGKLLKDD 560 (825)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHhcccccccCceeEech---------------------hHHHHHHHHHHHHcCCH
Confidence 33456889999998888888776653311 11111111 11333455677889999
Q ss_pred hHHHHHHHHHHHHHHHhhhcccccccccccccccccccchHHHHHHHHHHcCCHHHHHHhhhcccccccchhcccCCCCC
Q 002973 253 QALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQADDIS 332 (861)
Q Consensus 253 ~aL~va~~~ad~~~~r~~~~~~~~~~~~~~~~l~~E~GGmne~L~~LY~~TGd~ryL~lA~~F~~~~~~~~l~~~~D~l~ 332 (861)
+.++.+.+.++.+.+.... . .....++. ..|+..+|..||+.|++++++++|....+.-+ .. ....+...
T Consensus 561 ~~~~~a~~~~~~l~~~~~~------~-~~~D~~~G-~aGii~~Ll~l~~~~~~~~~l~~a~~~~~~l~-~~-~~~~~~~~ 630 (825)
T cd04792 561 RLLNLAKEILDLIDELIEK------D-EKLDFISG-AAGLILVLLSLYELFLSERFLDLALKCGDHLL-EN-ASNEDGGI 630 (825)
T ss_pred HHHHHHHHHHHHHHHhhcc------c-cCCCEeee-cHHHHHHHHHHHhccCChHHHHHHHHHHHHHH-Hh-hhhccCCc
Confidence 9999999888877543211 0 00112222 23577899999999999999999876533210 00 00001000
Q ss_pred ------CCcccCCcc--chhHHHHHHHhcCCcHHHHHHHHHHHHhhccceeeecCCCCCCCCCCCcccccCCCcCcccch
Q 002973 333 ------GFHANTHIP--VVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESC 404 (861)
Q Consensus 333 ------g~HanthiP--~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~yvTGG~g~~E~f~~p~~l~~~l~~~~~ETC 404 (861)
....-.|.. ++...+..|+.|+|+.|++.+...++.... + +..++ ..|... . . .....--|
T Consensus 631 ~~~~~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~-~-~~~~~----~~w~~~-~-~---~~~~~~WC 699 (825)
T cd04792 631 GPAEQPNLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERR-L-FSEEG----WNWPRK-D-G---NSFSAAWC 699 (825)
T ss_pred ccccccccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH-h-cCHhh----cCCCCc-C-c---CCCCCccc
Confidence 001123333 223356779999999999999988875532 2 21111 112110 0 0 01112234
Q ss_pred -hhHHHHHHHHhhhcc--cCCchHHHHHHHHHh
Q 002973 405 -TTYNMLKVSRHLFRW--TKEMVYADYYERALT 434 (861)
Q Consensus 405 -as~nmlkl~~~Lf~~--tgD~~YaD~~ERaLy 434 (861)
.+.+.+.....+.+. ..|..+.+.+++++-
T Consensus 700 hG~~GI~lal~~~~~~~~~~d~~~~~~i~~~~~ 732 (825)
T cd04792 700 HGAPGILLARLELLKFNDLDDEELKEEIEIALK 732 (825)
T ss_pred CCcHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 344555555566666 578888888888763
No 27
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=95.11 E-value=0.4 Score=54.55 Aligned_cols=196 Identities=17% Similarity=0.098 Sum_probs=109.4
Q ss_pred CCcCccccchhHHHHHHHHHHHhcCChh---HHHHHHHHHHHHHHHHhhcCCCccccCCcchhhhhhccCCcccccchhH
Q 002973 160 PTCELRGHFVGHYLSASAHMWASTHNVT---LKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIH 236 (861)
Q Consensus 160 ~d~~l~Gh~~Gh~LsAlA~~~a~t~D~~---L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~~~~~~~l~~~W~pyYt~H 236 (861)
.+.++.+|.+ -|=|+|. ++..++++ +++.+-.+++.+..-++.---||.-+.|- ..- . .-.-.+|
T Consensus 111 at~d~Y~haF--allA~A~-~a~a~~~~a~~~~~~a~~~l~~~~~~~~~pl~~~e~~~~~---~~p---l---~sNp~MH 178 (388)
T COG2942 111 ATKDLYGHAF--ALLAAAH-AATAGPPRADELLDEALDVLERRFWREEHPLGGFEEDNPG---SAP---L---GSNPHMH 178 (388)
T ss_pred ccHhHHHHHH--HHHHHHH-HHhcCChhHHHHHHHHHHHHHHHHhhhcCCcccccccCCC---CCc---c---CCCcchH
Confidence 3456666554 2333333 23345554 55555556655555554212233333321 110 0 1223678
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhhcccc----ccccccccccccccc-c------hH--HHHHHHHHHc
Q 002973 237 KILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITK----YSVERHWNSLNEETG-G------MN--DVLYRLYTIT 303 (861)
Q Consensus 237 kI~aGLld~y~~tG~~~aL~va~~~ad~~~~r~~~~~~~----~~~~~~~~~l~~E~G-G------mn--e~L~~LY~~T 303 (861)
++++ +|+.|+.+|....++.|.+.|+-+.++|-....+ ..+++ |.+.+.+.| | ++ --|.++-+.-
T Consensus 179 l~EA-~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~d-W~p~~~frg~~~ePGH~fEW~~Lll~~a~~~ 256 (388)
T COG2942 179 LLEA-MLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFDHD-WNPAHGFRGRGIEPGHQFEWAWLLLDIARRR 256 (388)
T ss_pred HHHH-HHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhcccc-CCcCCCcccCCCCCchHHHHHHHHHHHHHHh
Confidence 6665 6799999999999999999999999988542221 11222 333333333 1 22 3677888888
Q ss_pred CCHHHHHHhhhcccccccc---hhcc------cCCCCCCCc--ccCCccch--hH-HHHHHHhcC-CcHHHHHHHHHHHH
Q 002973 304 QDPKHLLLAHLFDKPCFLG---LLAV------QADDISGFH--ANTHIPVV--IG-SQMRYEVTG-DPLYKVTGTFFMDI 368 (861)
Q Consensus 304 Gd~ryL~lA~~F~~~~~~~---~l~~------~~D~l~g~H--anthiP~~--~G-~a~~Y~~TG-D~~y~~aa~~fwd~ 368 (861)
|+...+..|+++.+...-. +... ..|. ..| .+-.-|+. ++ +..++..|| ++.|.+...++|+-
T Consensus 257 ~~~~l~~~A~~lf~~a~~~g~d~~~gg~~~sl~~D~--~~~d~~~r~WpQ~E~l~AA~ala~~~~~~~~y~~~~~R~~~~ 334 (388)
T COG2942 257 GRAWLIEAARRLFDIAVADGWDPERGGAYYSLDDDG--SPHDRQQRLWPQTEALKAAVALAETTGARERYWQWYARAWDY 334 (388)
T ss_pred chhHHHHHHHHHHHHHHHhccCcccCeEEEEecCCC--CcCCHHHhhChHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 9999999998875432211 1000 0010 011 11123432 44 445578899 89999999998888
Q ss_pred hhc
Q 002973 369 VNA 371 (861)
Q Consensus 369 V~~ 371 (861)
...
T Consensus 335 ~~~ 337 (388)
T COG2942 335 LWW 337 (388)
T ss_pred HHH
Confidence 764
No 28
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=95.09 E-value=0.17 Score=62.21 Aligned_cols=119 Identities=15% Similarity=0.212 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhc-CCCccccCCcchhhhhhccCCcccccchhHHHHHHHHHHHHH
Q 002973 170 GHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKM-GSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTF 248 (861)
Q Consensus 170 Gh~LsAlA~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~-~dGYL~a~~~~~~~~~~~l~~~W~pyYt~HkI~aGLld~y~~ 248 (861)
+-|+=|+...+..+.|..+.+.+...|..|..+-++. .-+|+++- ++ +..-|+..|+.
T Consensus 699 ~g~~yal~~I~~~~~~~~l~~~~~~~i~~le~~v~~~~~~d~i~Gl-------------------~g--~i~~L~~iYk~ 757 (963)
T COG4403 699 SGYFYALWKIYSVTRDNYLIQSAENSIRHLEILVQKSKDPDFINGL-------------------AG--VICVLVSIYKL 757 (963)
T ss_pred chhhhhhHHHHHhcccHHHHHHHHHHHHHHHHHHhhccCcchhhcc-------------------HH--HHHHHHHHHhh
Confidence 3466678888889999999999999999988886543 23444332 11 33456799999
Q ss_pred cCChhHHHHHHHHHHHHHHHhhhcccccccccccccc-ccccc--chHHHHHHHHHHcCCHHHHHHhhhc
Q 002973 249 ADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSL-NEETG--GMNDVLYRLYTITQDPKHLLLAHLF 315 (861)
Q Consensus 249 tG~~~aL~va~~~ad~~~~r~~~~~~~~~~~~~~~~l-~~E~G--Gmne~L~~LY~~TGd~ryL~lA~~F 315 (861)
+..++.|++|..+++++++..-.. ++ +..++ .-.+| |+..+|..||+.|||++++..++..
T Consensus 758 ~~epk~l~~ais~~~~l~~~~v~~-----d~-s~~~l~gfshg~sgi~~tL~~ly~~T~e~~l~~~i~e~ 821 (963)
T COG4403 758 TDEPKFLELAISLGRILMEKIVGN-----DS-SETVLLGFSHGASGIILTLLKLYEATGEESLLKKIKEL 821 (963)
T ss_pred ccchHHHHHHHHHHHHHHHHhhcc-----cc-ccceecccccchHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 999999999999999998644321 11 11121 22344 6889999999999999999998754
No 29
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=95.01 E-value=0.18 Score=56.23 Aligned_cols=186 Identities=18% Similarity=0.103 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhhcccccccccccccccccccchHHHHHHHHHHcCCHHHHHHhhhccc
Q 002973 238 ILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDK 317 (861)
Q Consensus 238 I~aGLld~y~~tG~~~aL~va~~~ad~~~~r~~~~~~~~~~~~~~~~l~~E~GGmne~L~~LY~~TGd~ryL~lA~~F~~ 317 (861)
.+.|+..+|++||+++.|+.++..+|....+=+ ++... ++.-. +-..|.-||+.|||++||++|....+
T Consensus 41 ~lyGv~~~~eAT~d~~yl~~l~~~~d~~i~~~g--~~~~~-------id~i~--~g~~L~~L~e~T~~~~Yl~~a~~~a~ 109 (357)
T COG4225 41 FLYGVARAYEATGDAEYLDYLKTWFDEQIDEGG--LPPRN-------IDHIA--AGLTLLPLYEQTGDPRYLEAAIKLAS 109 (357)
T ss_pred hHHHHHHHHHHcCcHHHHHHHHHHHHhhhccCC--CCccc-------hhhhc--cCceeeehhhhhCCHHHHHHHHHHHH
Confidence 456888999999999999999888887764311 11111 11110 11468889999999999999877632
Q ss_pred ccccchhcccCCCCCCCcccCCccc----------hhH---HHHHHHhcCCcHHH-HHHHHHHHHhhccceeeecCCCCC
Q 002973 318 PCFLGLLAVQADDISGFHANTHIPV----------VIG---SQMRYEVTGDPLYK-VTGTFFMDIVNASHGYATGGTSAG 383 (861)
Q Consensus 318 ~~~~~~l~~~~D~l~g~HanthiP~----------~~G---~a~~Y~~TGD~~y~-~aa~~fwd~V~~~h~yvTGG~g~~ 383 (861)
.-...+ .. .-.+ ..|+.. .+| .++.-.++|+++|. ++.+.||..+..-+==.||=.=
T Consensus 110 ~l~~~~-Rt---~eG~---f~H~~~~p~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~QF~~~~~~l~Dp~TGL~Y-- 180 (357)
T COG4225 110 WLVHEP-RT---KEGG---FQHKVKYPHQMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQFSLHEKYLRDPETGLYY-- 180 (357)
T ss_pred HHhhCc-cc---CCCc---cccccCchhHhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHccCCCcCceE--
Confidence 111111 00 0001 123322 244 46667999999997 6667888876432211222110
Q ss_pred CCCCCCcccccCCCcCccc-----------chhhHHHHHHHHhhhcccCCchHHHHHHHHHhhhhcccccCCCCCeE
Q 002973 384 EFWSDPKRLASTLGTENEE-----------SCTTYNMLKVSRHLFRWTKEMVYADYYERALTNGVLSIQRGTEPGVM 449 (861)
Q Consensus 384 E~f~~p~~l~~~l~~~~~E-----------TCas~nmlkl~~~Lf~~tgD~~YaD~~ERaLyN~iLa~q~~~d~g~~ 449 (861)
-.|.+.. ..+-+..| .-.++.+..+.+.|=.-.++..+..-.=|.+.-+|+.-|+ +.|.+
T Consensus 181 H~wd~~~----~~~w~~~~sG~~~fWaRg~gW~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~r~Qd--e~GlW 251 (357)
T COG4225 181 HGWDEDG----TMPWANNESGEPAFWARGNGWYAMALADLLELLPEDHPDRRELLNVLRDLVDALIRYQD--ESGLW 251 (357)
T ss_pred EeeccCC----CCccccccCCCceeeecccchHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHhhc--cccch
Confidence 1111111 11112222 2355666666666666555544444444444445555565 44543
No 30
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=94.75 E-value=0.087 Score=58.89 Aligned_cols=136 Identities=18% Similarity=0.111 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHhhhcccccccchhcccCCCCCCCcccCCccchhHHHHHHHhcCCcHHHHHHHHHHH-Hhh
Q 002973 292 MNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMD-IVN 370 (861)
Q Consensus 292 mne~L~~LY~~TGd~ryL~lA~~F~~~~~~~~l~~~~D~l~g~HanthiP~~~G~a~~Y~~TGD~~y~~aa~~fwd-~V~ 370 (861)
+-.+|..+|+.|||++|++.|+.+.+..+.. ... ..+.+.| .+.......|+.|||+.|++++....+ .+.
T Consensus 30 ~~~gl~~~~~~tgd~~~~~~a~~~~~~~~~~-~~~------~~~~d~~-~~g~~~~~~y~~t~d~~y~~~~~~~a~~~l~ 101 (336)
T PF07470_consen 30 FWYGLLEAYEYTGDERYLDYAERWADRFIEE-DGS------DYNLDDH-DIGFLLLDLYERTGDEKYKDAAIQAADWLLA 101 (336)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHT------TTSCCGT-THHHHHHHHHHHH-THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhc-cCC------ccCCchh-hhHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5567889999999999999998764332111 100 1122233 333345778999999999999999999 554
Q ss_pred ccceeeecCCCCCCCCCCCcccccCCCcCcccchhhH--HHHHHHHhhhcccCCchHHHHHHHHHhhhhcccccCCCCCe
Q 002973 371 ASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTY--NMLKVSRHLFRWTKEMVYADYYERALTNGVLSIQRGTEPGV 448 (861)
Q Consensus 371 ~~h~yvTGG~g~~E~f~~p~~l~~~l~~~~~ETCas~--nmlkl~~~Lf~~tgD~~YaD~~ERaLyN~iLa~q~~~d~g~ 448 (861)
+..--..||+...+.. +. ... |-+. +. -+.-++...|||.+|.|.+.+-+-...--..++ +.|.
T Consensus 102 ~~~~~~~G~~~~~~~~------~~---~~w---iD~~~M~~-p~l~~~~~~tgd~~~~~~a~~q~~~~~~~~~d~-~tGl 167 (336)
T PF07470_consen 102 RRPRTSDGGFWHNRPY------PN---QVW---IDGMYMNL-PFLAWAGKLTGDPKYLDEAVRQFRLTRKYLYDP-ETGL 167 (336)
T ss_dssp TSCBECTGCBECTTTS------TT---EEE---TTHHHHHH-HHHHHHHHHHTGHHHHHHHHHHHHHHHHHHB-T-TTSS
T ss_pred hCCCCCCCccccCCCC------CC---cee---eccccccH-HHHHHHHHHHCCcHHHHHHHHHHHHHHHhccCC-CCCc
Confidence 3332245655431111 00 111 2222 22 333446888999999998877654443334444 4454
Q ss_pred E
Q 002973 449 M 449 (861)
Q Consensus 449 ~ 449 (861)
+
T Consensus 168 ~ 168 (336)
T PF07470_consen 168 Y 168 (336)
T ss_dssp B
T ss_pred e
Confidence 4
No 31
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=94.16 E-value=1.1 Score=53.59 Aligned_cols=197 Identities=19% Similarity=0.225 Sum_probs=104.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHHHHhhcC-CCccccCCcchhhhhhccC----CcccccchhHHHHHHHHHHHHHcC-
Q 002973 177 AHMWASTHNVTLKEKMTAVVSALSECQNKMG-SGYLSAFPSEQFDRFEALK----PVWAPYYTIHKILAGLLDQYTFAD- 250 (861)
Q Consensus 177 A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~-dGYL~a~~~~~~~~~~~l~----~~W~pyYt~HkI~aGLld~y~~tG- 250 (861)
.+....|+|+++.++++++.+.|.+.+. . +|-+..+-...-..|.... ..--.|| .-|+-+|.++|
T Consensus 232 ~~LS~lTGd~kY~~~a~~i~~~l~~~~~--~~~GL~p~~i~~~~g~~~~~~~siGa~~DS~Y------EYLlK~~il~~~ 303 (522)
T PTZ00470 232 NYLSEITGDPKYAEYVDKVMDALFSMKP--AINGLYPIFLNPDAGRFCGNHISLGALGDSYY------EYLLKQWLYTNG 303 (522)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHHhcCC--CCCCccceEECCccCccCCCceeecCCcchhH------HHHHHHHHhcCC
Confidence 3344579999999999999999987654 3 5655443211001111100 0011344 34778899986
Q ss_pred -ChhHHHHHHHHHHHHHHHhhhc-ccc------ccc---ccccccccccccchHHHHHHHHH----HcCCHHHHHHhhhc
Q 002973 251 -NTQALKMTKWMVEYFYNRVQNV-ITK------YSV---ERHWNSLNEETGGMNDVLYRLYT----ITQDPKHLLLAHLF 315 (861)
Q Consensus 251 -~~~aL~va~~~ad~~~~r~~~~-~~~------~~~---~~~~~~l~~E~GGmne~L~~LY~----~TGd~ryL~lA~~F 315 (861)
+++.+++-....+-+.+.+... ..+ +.. .....-+.|-.|||- +|.-..+ ...+++|+++|+.+
T Consensus 304 ~d~~~~~~~~~a~~~i~~~l~~~s~~~~~~v~~~~~~~~~~~~~hL~cF~gG~~-aLg~~~~~~~~~~~~~~~~~~a~~l 382 (522)
T PTZ00470 304 REERYRRLFVESAKGIIEHLYKRSPKGLTYIAEMDGGSLTNKMEHLACFAGGMF-ALGAAINITPDDEKSARYMEVGEEV 382 (522)
T ss_pred CcHHHHHHHHHHHHHHHHHhcccCCCCcEEEeeccCCcCcchhhhhhhhccchh-hhcccccccccccccHHHHHHHHHH
Confidence 5556666555555554432110 000 000 000112345566752 2221111 12357899999876
Q ss_pred ccccc---------cchhcccC----CCCCCCcccCC---cc-chhHHHHHHHhcCCcHHHHHHHHHHHHhhccceeeec
Q 002973 316 DKPCF---------LGLLAVQA----DDISGFHANTH---IP-VVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATG 378 (861)
Q Consensus 316 ~~~~~---------~~~l~~~~----D~l~g~Hanth---iP-~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~yvTG 378 (861)
.+.|+ +.|....- ....-.....+ =| .++..-.+|++|||+.|++.+...|+.+. ++.-+.+
T Consensus 383 ~~tC~~~Y~~~~tGl~PE~~~~~~~~~~~~~~~~d~~Y~LRPE~iES~fylyR~TgD~~yre~gW~~f~ai~-k~~rt~~ 461 (522)
T PTZ00470 383 TKTCYETYATSPTGLGPEIFHFDPNSGDISPNVHDSHYILRPETVESIFILYRLTGDPKYREWAWKIFQAIE-KHCKTEN 461 (522)
T ss_pred HHHHHHHHHhcccCCCCceEEeccCccccccccCCCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHhcCCc
Confidence 43322 12221100 00000000112 13 45778888999999999999999999987 4666677
Q ss_pred CCCCC
Q 002973 379 GTSAG 383 (861)
Q Consensus 379 G~g~~ 383 (861)
|.++-
T Consensus 462 Gya~i 466 (522)
T PTZ00470 462 GYSGL 466 (522)
T ss_pred ccccc
Confidence 77653
No 32
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=93.75 E-value=0.2 Score=52.03 Aligned_cols=132 Identities=20% Similarity=0.121 Sum_probs=75.7
Q ss_pred HHHHHHHHHHcCCHHHHHHhhhcccccccchhcccC------C--CCCCCc--------ccCCccchhHHHHHHHhcCCc
Q 002973 293 NDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQA------D--DISGFH--------ANTHIPVVIGSQMRYEVTGDP 356 (861)
Q Consensus 293 ne~L~~LY~~TGd~ryL~lA~~F~~~~~~~~l~~~~------D--~l~g~H--------anthiP~~~G~a~~Y~~TGD~ 356 (861)
..+|+|.|++|||++||+.|++..+.- .-+..++. + .+--.+ -|.||=.++|.-..+..|+++
T Consensus 36 ~s~l~RAy~~t~d~~Yl~aA~~al~~f-~~~~~~GG~~~~~~~~~~wyeEYp~~p~s~VLNGfiysL~GLyd~~~~~~~~ 114 (189)
T PF06662_consen 36 ISVLARAYQLTGDEKYLDAAKKALNSF-KVPVEEGGVLATFKNKYPWYEEYPTTPPSYVLNGFIYSLIGLYDYYRLTGDE 114 (189)
T ss_pred HHHHHHHHHhHCCHHHHHHHHHHHHHh-cChHhhCCeeEEecCCcEeEeecCCCCCCEEeehHHHHHHHHHHHHHhcCCH
Confidence 468999999999999999999853321 11111100 0 000011 133343457777778899998
Q ss_pred HHHHHHHHHHHHhhcc-ceeeecCCCCCC--CCCCCcccccCCCcCcccchhhHHHHHHHHhhhcccCCchHHHHHHH
Q 002973 357 LYKVTGTFFMDIVNAS-HGYATGGTSAGE--FWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYER 431 (861)
Q Consensus 357 ~y~~aa~~fwd~V~~~-h~yvTGG~g~~E--~f~~p~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgD~~YaD~~ER 431 (861)
..++.-+.-.+.+... ..|-+|+.+..- |+.. +..++.-...|. .. .+.....|..+|+|+.+.+++||
T Consensus 115 ~A~~lf~~Gl~sLk~~Lp~yD~G~wS~Ydl~h~~~-~~~~~~a~~~YH--~l---Hi~qL~~L~~it~d~~f~~~a~r 186 (189)
T PF06662_consen 115 EAKELFDKGLKSLKKMLPLYDTGSWSRYDLRHFTL-GNAPNIARWDYH--RL---HIQQLKWLYSITGDPIFKEYAER 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCchhhcccccc-ccCcCcCcchHH--HH---HHHHHHHHHHhcCCHHHHHHHHH
Confidence 7776666666655321 356777776422 2211 111110001121 12 34455678999999999999997
No 33
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=93.75 E-value=2.4 Score=48.32 Aligned_cols=182 Identities=13% Similarity=-0.046 Sum_probs=99.9
Q ss_pred CChhHHHHHHHHHHHHHHHHhhcCCCccccCCcchhhhhhcc-CCcccccchh--HH---HHHHHHHHHHHc-CChhHHH
Q 002973 184 HNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEAL-KPVWAPYYTI--HK---ILAGLLDQYTFA-DNTQALK 256 (861)
Q Consensus 184 ~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~~~~~~~l-~~~W~pyYt~--Hk---I~aGLld~y~~t-G~~~aL~ 256 (861)
.+.+....+..+++.|.+.+.....+|+..... +...+.. .....++ .+ |- |+..|...|+.+ ++++.++
T Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~G~aHG~aGi~~~L~~~~~~~~~~~~~~~ 196 (382)
T cd04793 120 PDSELLREILDYLVYLTEPLNQDITLYIWSENQ--PSETESKEFPEGHIN-LGLAHGIAGPLALLALAKERGIRVDGQLE 196 (382)
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCCccCcCcC--CCccccccCCCcccc-ccchhcchHHHHHHHHHHHcCCCcCChHH
Confidence 567777778888888877654223333332211 0101100 0000111 11 22 445555667777 7889999
Q ss_pred HHHHHHHHHHHHhhhccc-cccc--------------cccccccccccc--chHHHHHHHHHHcCCHHHHHHhhhccccc
Q 002973 257 MTKWMVEYFYNRVQNVIT-KYSV--------------ERHWNSLNEETG--GMNDVLYRLYTITQDPKHLLLAHLFDKPC 319 (861)
Q Consensus 257 va~~~ad~~~~r~~~~~~-~~~~--------------~~~~~~l~~E~G--Gmne~L~~LY~~TGd~ryL~lA~~F~~~~ 319 (861)
++.+..+|+.+.+...-. .+.. ........--+| |+..+|..+++.++|+++.+.|....+..
T Consensus 197 ~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~ 276 (382)
T cd04793 197 AIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDAWCYGTPGIARALQLAGKALDDQKLQEAAEKILKAA 276 (382)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999998888765421100 0000 000000011234 68899999999999999999988764321
Q ss_pred ccchhcccCCCCCCCcccCCcc--chhHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 002973 320 FLGLLAVQADDISGFHANTHIP--VVIGSQMRYEVTGDPLYKVTGTFFMDIVNA 371 (861)
Q Consensus 320 ~~~~l~~~~D~l~g~HanthiP--~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~ 371 (861)
.-.... ... ...+..-|.- +.......|+.|+|+.++++++++.+.+..
T Consensus 277 ~~~~~~--~~~-~~~~~lChG~~G~~~~l~~~~~~~~~~~~~~~a~~~~~~~l~ 327 (382)
T cd04793 277 LKDKKQ--LSK-LISPTLCHGLAGLLFIFYLLYKDTNTNEFKSALEYLLNQIIS 327 (382)
T ss_pred HhChhh--hcc-CCCCCcCccHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 110000 000 0122344554 234467779999999999999999887764
No 34
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=93.61 E-value=0.66 Score=51.82 Aligned_cols=141 Identities=19% Similarity=0.092 Sum_probs=78.5
Q ss_pred cccchHHHHHHHHHHcCCHHHHHHhhhcccccccchhcccCCCCCCCcccCCccchhHHHHHHHhcCCcHHHHHHHHHHH
Q 002973 288 ETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMD 367 (861)
Q Consensus 288 E~GGmne~L~~LY~~TGd~ryL~lA~~F~~~~~~~~l~~~~D~l~g~HanthiP~~~G~a~~Y~~TGD~~y~~aa~~fwd 367 (861)
|.|=---.++++|+.|||++||+..+...+..+... .++ ...-.||-...=..-+|+.|||++|++++.++=+
T Consensus 37 e~GV~lyGv~~~~eAT~d~~yl~~l~~~~d~~i~~~------g~~-~~~id~i~~g~~L~~L~e~T~~~~Yl~~a~~~a~ 109 (357)
T COG4225 37 EQGVFLYGVARAYEATGDAEYLDYLKTWFDEQIDEG------GLP-PRNIDHIAAGLTLLPLYEQTGDPRYLEAAIKLAS 109 (357)
T ss_pred cccchHHHHHHHHHHcCcHHHHHHHHHHHHhhhccC------CCC-ccchhhhccCceeeehhhhhCCHHHHHHHHHHHH
Confidence 444334678999999999999998876533322211 011 0111122111113467999999999999999988
Q ss_pred HhhccceeeecCCCCCCCCCCCcccccCCCcCcccchhhH--HHHHHHHhhhcccCCchHHHHHHHHHhhhhcccccCCC
Q 002973 368 IVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTY--NMLKVSRHLFRWTKEMVYADYYERALTNGVLSIQRGTE 445 (861)
Q Consensus 368 ~V~~~h~yvTGG~g~~E~f~~p~~l~~~l~~~~~ETCas~--nmlkl~~~Lf~~tgD~~YaD~~ERaLyN~iLa~q~~~d 445 (861)
.+++ +. -|. .+=+|+... .+ +.==|.+- +-++++ ++=+.+++++|+|.+=+.+-=+.---++| +
T Consensus 110 ~l~~-~~-Rt~---eG~f~H~~~-~p------~Q~W~DtL~Ma~~F~a-k~g~~~~~~e~~d~~~~QF~~~~~~l~Dp-~ 175 (357)
T COG4225 110 WLVH-EP-RTK---EGGFQHKVK-YP------HQMWLDTLYMAGLFLA-KYGQVTGRPEYFDEALYQFSLHEKYLRDP-E 175 (357)
T ss_pred HHhh-Cc-ccC---CCccccccC-ch------hHhhhcchhhhhHHHH-HHHHHhCCHHHHHHHHHHHHHHHHHccCC-C
Confidence 8874 32 221 111222111 01 11112221 112222 35567899999999877775555555665 5
Q ss_pred CCeE
Q 002973 446 PGVM 449 (861)
Q Consensus 446 ~g~~ 449 (861)
+|-|
T Consensus 176 TGL~ 179 (357)
T COG4225 176 TGLY 179 (357)
T ss_pred cCce
Confidence 5544
No 35
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=92.57 E-value=0.99 Score=52.98 Aligned_cols=263 Identities=11% Similarity=0.074 Sum_probs=134.3
Q ss_pred hhHHHHHHHHHHHhc--CChhHHHHHHHHHHHHHHHHhhcCCCccccCCcchhhhhhccCCccccc-chhHHH---HHHH
Q 002973 169 VGHYLSASAHMWAST--HNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPY-YTIHKI---LAGL 242 (861)
Q Consensus 169 ~Gh~LsAlA~~~a~t--~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~~~~~~~l~~~W~py-Yt~HkI---~aGL 242 (861)
.-++|.++--+|..+ +|+.|.+|+.++.|.|..+-+ .++|.-.+.. -+. ......|... -+++-+ ..-+
T Consensus 79 ~iR~lGgLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~-t~~g~P~~~~--n~~--~~~~~~~~~~~~~la~~gs~~lEf 153 (452)
T PF01532_consen 79 TIRVLGGLLSAYDLSGEGDPILLSKAVELADRLLPAFD-TPTGIPYPRV--NLR--TGGKNRWPGGESSLAEAGSLQLEF 153 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGS-SSSS---SEE--ETT--TCEEETTCCGEEEHHHHCSSHHHH
T ss_pred hhHhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHhcc-CCCcccccee--eec--ccCCCCCCCCcccccccccceech
Confidence 567888886666777 999999999999999988774 2455421110 000 0001111111 011111 1112
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHh-----hhccccc-cc-ccccccccccccchH----HHHHHHHHHcC--CHHHH
Q 002973 243 LDQYTFADNTQALKMTKWMVEYFYNRV-----QNVITKY-SV-ERHWNSLNEETGGMN----DVLYRLYTITQ--DPKHL 309 (861)
Q Consensus 243 ld~y~~tG~~~aL~va~~~ad~~~~r~-----~~~~~~~-~~-~~~~~~l~~E~GGmn----e~L~~LY~~TG--d~ryL 309 (861)
..-.+.||+++..+.+.+..+.+.+.. ..+.+.. +. ...|.......||+. |-|.+.|-++| |+.|+
T Consensus 154 ~~LS~lTgd~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~g~~~~~~~~~Ga~~DS~YEYLlK~~lL~g~~d~~~~ 233 (452)
T PF01532_consen 154 TRLSQLTGDPKYFDAADRIYDALWRSQNRSKIPGLFPNFIDPSTGKWTSSSISLGAGGDSFYEYLLKMYLLLGGTDEQYR 233 (452)
T ss_dssp HHHHHHHS-THHHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTTS-BSSTEE-SSTTTHHHHHHHHHHHHHTTTTTHHHH
T ss_pred hHHHHHhhccHHHHHHHHHHHHHHHhhhccCCcccCcceecCCcCcccccccccCCCcchHHHhhhhhhhhcCccchHHH
Confidence 245778999999999999999998621 1111111 00 011111122345554 67889999999 88888
Q ss_pred HHhhhc---------ccccccc---hhcc-cC---CCCCCCcccCCccchhH-HHHH-HHhcCCcHHHHHHHHHHHHh-h
Q 002973 310 LLAHLF---------DKPCFLG---LLAV-QA---DDISGFHANTHIPVVIG-SQMR-YEVTGDPLYKVTGTFFMDIV-N 370 (861)
Q Consensus 310 ~lA~~F---------~~~~~~~---~l~~-~~---D~l~g~HanthiP~~~G-~a~~-Y~~TGD~~y~~aa~~fwd~V-~ 370 (861)
++=+.. .++..-. .+-. .. ....-.+..+|.-++.| ...+ ...-+++.+++.|+...+.- .
T Consensus 234 ~~~~~a~~~i~~~Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l~Lg~~~~~~~~~~~~A~~l~~~C~~ 313 (452)
T PF01532_consen 234 DMYDEAVDAIKKHLLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGMLALGAKLFNDEGDLELAEELTETCYW 313 (452)
T ss_dssp HHHHHHHHHHHHHTEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGGHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCccceeEeeeeecccCccccccccchhhcchhHHHHhhcccCchhHHHHHHHHHHHHHH
Confidence 763322 1100000 0000 00 01112234567766655 2222 34447789988888766663 2
Q ss_pred ccceeeecCCCCCCCCCC-Cccc---------ccCCCcCcccchhhHHHHHHHHhhhcccCCchHHHHHHHHHhhhhcc
Q 002973 371 ASHGYATGGTSAGEFWSD-PKRL---------ASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTNGVLS 439 (861)
Q Consensus 371 ~~h~yvTGG~g~~E~f~~-p~~l---------~~~l~~~~~ETCas~nmlkl~~~Lf~~tgD~~YaD~~ERaLyN~iLa 439 (861)
-++.+.||..- |.|.- +..- ...+........-.-+.+.+.-+|+++|||++|-|.-..++ +++-.
T Consensus 314 ~y~~~~tGl~P--E~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~LRPE~iES~fylyR~TgD~~yre~gw~if-~ai~k 389 (452)
T PF01532_consen 314 LYKSTPTGLGP--EIFSFDPCEENCQWDEERKDFMIKISDPRYLLRPETIESLFYLYRATGDPKYREWGWDIF-QAIEK 389 (452)
T ss_dssp HHHTSSSSS----SEEEESCSCG--TEETGGCSCCHHGGG--B-S--HHHHHHHHHHHHH-BHHHHHHHHHHH-HHHHH
T ss_pred HHHhcccCCCc--eEEEeeccccccccchhhcccccccccccccchhhhhhheeEEEEEcCCchHHHHHHHHH-HHHHH
Confidence 23445555432 43311 1000 00000011222333478889999999999999999887754 55544
No 36
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=90.66 E-value=6.3 Score=45.84 Aligned_cols=243 Identities=16% Similarity=0.130 Sum_probs=112.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCCccccCC------cchhhhhhcc---CCc-----ccccchhHHHHHHHH-HHHHHcC
Q 002973 186 VTLKEKMTAVVSALSECQNKMGSGYLSAFP------SEQFDRFEAL---KPV-----WAPYYTIHKILAGLL-DQYTFAD 250 (861)
Q Consensus 186 ~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~------~~~~~~~~~l---~~~-----W~pyYt~HkI~aGLl-d~y~~tG 250 (861)
+.+.+.+..-+|.|.+||. ++|.+-.-- ...|.+.+.. +.. ..|--..=..+++.+ .+++.-.
T Consensus 94 ~dllde~kwg~D~llkm~~--~~~~~~~qvgdg~~~h~~w~~~~~~~~~~~~~~~~~~~~~t~~~~~~AAalA~As~v~k 171 (444)
T PF00759_consen 94 PDLLDEAKWGLDWLLKMQD--SDGTFYAQVGDGGVDHKVWGRPEIMPDDDPSYRYDAPNPGTDATAEFAAALAAASRVFK 171 (444)
T ss_dssp HHHHHHHHHHHHHHHHTBS--CTTEEEEEESTHHHHHTEESTGGGTGSGESEEEEETTB-EHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhccC--CCCceeeeccCccchhhcccCCCCCCCCCCcceEecCCCchHHHHHHHHHHHHHHHhcc
Confidence 7888999999999999998 544432211 0111111110 000 001101001223333 3444333
Q ss_pred C------hhHHHHHHHHHHHHHHHhhhccccccc-cccccc---ccccccchHHHHHHHHHHcCCHHHHHHhhhcccccc
Q 002973 251 N------TQALKMTKWMVEYFYNRVQNVITKYSV-ERHWNS---LNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCF 320 (861)
Q Consensus 251 ~------~~aL~va~~~ad~~~~r~~~~~~~~~~-~~~~~~---l~~E~GGmne~L~~LY~~TGd~ryL~lA~~F~~~~~ 320 (861)
+ ++.|+.|+++=+|..+.-......... ....+. ...| +..+-+|||+.|||++|++.|+.+.....
T Consensus 172 ~~d~~~A~~~L~~A~~~~~~a~~~~~~~~~~~~~~~~~~Y~~~~~~De---~~wAA~~Ly~aTg~~~Y~~~a~~~~~~~~ 248 (444)
T PF00759_consen 172 DFDPAYAAQCLKAAKEAYAFAKKNPGVYSDNPQPNGGGFYNSSGYEDE---LAWAAAELYRATGDESYLDYAKEYYDDLE 248 (444)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHSTTHGGGTSTCTTTTTSHCS-SHHH---HHHHHHHHHHHHT-HHHHHHHHHHCCTSS
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhCCCcccCCcccccCCcccCCCcccH---HHHHHHHHHHhcCcHHHHHHHHHhHHhhc
Confidence 3 478889999888887643322111100 000000 1112 44678899999999999999988753211
Q ss_pred cchhcccCCCCCCCcccCCccchhH-HHHHHHhc-C-------CcHHHHHHHHHHHHhhcc----ceeeecCCCCCCCCC
Q 002973 321 LGLLAVQADDISGFHANTHIPVVIG-SQMRYEVT-G-------DPLYKVTGTFFMDIVNAS----HGYATGGTSAGEFWS 387 (861)
Q Consensus 321 ~~~l~~~~D~l~g~HanthiP~~~G-~a~~Y~~T-G-------D~~y~~aa~~fwd~V~~~----h~yvTGG~g~~E~f~ 387 (861)
.... .+. .. ...-.+..+ ...++..+ . .+.+++.++.+.+..... -.+..||..-.-.|
T Consensus 249 ~~~~---~~~--~~--~~W~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~W- 320 (444)
T PF00759_consen 249 ASQW---SNE--WS--FSWDNKAAGAQLLLAKLTNDDPSRDAAREQYKSAADKFLNKWLNDGYGSVPYTPGGLAWIYEW- 320 (444)
T ss_dssp BSTT---SSS--SS--SCTTBSHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHSTTTBSEBCTTSSBESEST-
T ss_pred cccc---ccc--cc--cchhhhhhhhhHHHHhcccchhhhHHHHHHHHHHHHHHHHHHhhccCCCcccCccccccccCC-
Confidence 1100 000 00 011112222 23333443 1 245667777777776542 01111111100001
Q ss_pred CCcccccCCCcCcccchhhHHHHHHHHhhhcccCCchHHHHHHHHHhhhhcccccCCCCCeEEEeccCCC
Q 002973 388 DPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTNGVLSIQRGTEPGVMIYMLPLGR 457 (861)
Q Consensus 388 ~p~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgD~~YaD~~ERaLyN~iLa~q~~~d~g~~~Y~~PL~~ 457 (861)
....-.|+. .+|.+.-.-+..+++.+|.++.++.+ |=|||. +|. ...|+.-++.
T Consensus 321 ----------Gs~~~~~~~-a~l~~~~~~~~~~~~~~y~~~a~~ql-dyiLG~-Np~---~~SyV~G~G~ 374 (444)
T PF00759_consen 321 ----------GSNRYAANA-AFLALAYAKYDLTGDQEYRDFAQSQL-DYILGR-NPF---GQSYVTGYGE 374 (444)
T ss_dssp ----------THHHHHHHH-HHHHHHHHHTCHCHHHHHHHHHHHHH-HHHHTT-STT-----BSBTTSSS
T ss_pred ----------CccHHHHHH-HHHHHHHHhcccCChHHHHHHHHHHh-hhhcCc-CCC---CceeeecCCC
Confidence 111111222 22222222225899999999999877 778886 342 2456655543
No 37
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=86.43 E-value=4.1 Score=48.02 Aligned_cols=139 Identities=24% Similarity=0.212 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHHHhhc-------CCCccccCCcchhhhhhc-cCCccccc----chhH
Q 002973 170 GHYLSASAHMWASTHN-VTLKEKMTAVVSALSECQNKM-------GSGYLSAFPSEQFDRFEA-LKPVWAPY----YTIH 236 (861)
Q Consensus 170 Gh~LsAlA~~~a~t~D-~~L~~k~d~~Vd~L~~~Q~~~-------~dGYL~a~~~~~~~~~~~-l~~~W~py----Yt~H 236 (861)
|-.||++|.+++.++. +++.+.+..+++-|.+.--.. +.=|.++- .+.+. .+..|+|- |+.
T Consensus 508 GLviSgl~kag~~~~a~~~y~~~a~~~a~fl~k~m~d~~eklliR~scY~ga~-----g~ve~~n~~~~~~~FldDYAF- 581 (786)
T KOG2244|consen 508 GLVISGLAKAGKILKAEPEYTKYAFPVANFLPKDMIDVAEKLLIRGSCYDGAS-----GRVEHSNRPSKAPAFLDDYAF- 581 (786)
T ss_pred chhhHHHHHHHHHhhcCHHHHHHHHHHHhhhhhhhhchhhhheeecccccCCC-----cceeccCCccccchhhhhHHH-
Confidence 6678999999988764 488888888877765543211 22233322 11221 23566643 444
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhh----ccccccccccc------ccccccccc--hHHHHHHHHHHcC
Q 002973 237 KILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQN----VITKYSVERHW------NSLNEETGG--MNDVLYRLYTITQ 304 (861)
Q Consensus 237 kI~aGLld~y~~tG~~~aL~va~~~ad~~~~r~~~----~~~~~~~~~~~------~~l~~E~GG--mne~L~~LY~~TG 304 (861)
++.||||.|+.+|+...|+-|.++-|=-.+-|=+ .+...+++..- ..+.+-.|- -.-.|++||.+++
T Consensus 582 -lI~gLLDlYea~~~~e~LkwA~~LQdtqdklFWdgggYF~Se~~~~~v~vRlkeDhDGAEPs~nSVsahNLvrL~~~~~ 660 (786)
T KOG2244|consen 582 -LISGLLDLYEAGGGIEWLKWAIKLQDTQDKLFWDGGGYFISEKTDEDVSVRLKEDHDGAEPSGNSVSAHNLVRLASIVA 660 (786)
T ss_pred -HHHHHHHHHHccCchHHHHHHHHHHHHHHHheecCCceeeeeccCCCcceeeccccCCCCCCccchhhhhHHHHHHHhh
Confidence 7899999999999999999999988765543311 00000110000 001111110 1246999999999
Q ss_pred CHHHHHHhhhc
Q 002973 305 DPKHLLLAHLF 315 (861)
Q Consensus 305 d~ryL~lA~~F 315 (861)
.+.||+-|.++
T Consensus 661 ~e~yl~ka~~l 671 (786)
T KOG2244|consen 661 AESYLNKAHRL 671 (786)
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 38
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=85.77 E-value=14 Score=42.12 Aligned_cols=143 Identities=12% Similarity=0.033 Sum_probs=85.2
Q ss_pred cchhHHHHHHHHHHHhc-CChhHHHHHHHHHHHHHHHHhhcCCCcccc--CCcc-hhhhhh-c---cCCcccccchhHHH
Q 002973 167 HFVGHYLSASAHMWAST-HNVTLKEKMTAVVSALSECQNKMGSGYLSA--FPSE-QFDRFE-A---LKPVWAPYYTIHKI 238 (861)
Q Consensus 167 h~~Gh~LsAlA~~~a~t-~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a--~~~~-~~~~~~-~---l~~~W~pyYt~HkI 238 (861)
|-..=.+.+|+.++..+ .++..++.+.+.++.+.+.+.....|-..+ ++.. ....-. . ....|.-=-.+ |
T Consensus 172 HG~aGi~~~L~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~wChG~~G--i 249 (382)
T cd04793 172 HGIAGPLALLALAKERGIRVDGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDAWCYGTPG--I 249 (382)
T ss_pred hcchHHHHHHHHHHHcCCCcCChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCCCCCCcHH--H
Confidence 44444677788888778 899999999999998888776333321111 1100 000000 0 11222211122 5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhhcccccccccccccccccccchHHHHHHHHHHcCCHHHHHHhhhcc
Q 002973 239 LAGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFD 316 (861)
Q Consensus 239 ~aGLld~y~~tG~~~aL~va~~~ad~~~~r~~~~~~~~~~~~~~~~l~~E~GGmne~L~~LY~~TGd~ryL~lA~~F~ 316 (861)
...++..++.+++++.++++.+...-+.++.... . ...... .-|.- -|+.+.|.++|+.|+++++++.|+++.
T Consensus 250 ~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~--~~~~~~-lChG~-~G~~~~l~~~~~~~~~~~~~~~a~~~~ 322 (382)
T cd04793 250 ARALQLAGKALDDQKLQEAAEKILKAALKDKKQL-S--KLISPT-LCHGL-AGLLFIFYLLYKDTNTNEFKSALEYLL 322 (382)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhChhhh-c--cCCCCC-cCccH-HHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 5566778889999999998888877655432110 0 000111 11222 267899999999999999999988763
No 39
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=85.48 E-value=7 Score=43.60 Aligned_cols=129 Identities=19% Similarity=0.196 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHhc----CChhHHHHHHHHHHHHHHHHhhcCCCccccCCcc---hhhhhhccCCcccccchhHHHHHHH
Q 002973 170 GHYLSASAHMWAST----HNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSE---QFDRFEALKPVWAPYYTIHKILAGL 242 (861)
Q Consensus 170 Gh~LsAlA~~~a~t----~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~---~~~~~~~l~~~W~pyYt~HkI~aGL 242 (861)
.|=|-++=+++... .++++.+-+..-||.+.+.|. ++|- ||.. ..+++ ..+.|. -.+ +.--|
T Consensus 221 AhGLagI~~vLm~~~L~~d~~~~~~dVK~sldym~~~rf--psGN---yP~s~~~~~drL--VhWcHG--ApG--v~~~L 289 (403)
T KOG2787|consen 221 AHGLAGILYVLMDPTLKVDQPALLKDVKGSLDYMIQNRF--PSGN---YPSSEGNKRDRL--VHWCHG--APG--VAYTL 289 (403)
T ss_pred hhhHHHHHHHHhCCCCCCcchhHHHhhhhHHHHHHHccC--CCCC---CCcccCCCccee--eeeccC--Cch--HHHHH
Confidence 34444555555432 456788888888999877777 7765 4432 22222 111221 011 22235
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHhhhcccccccccccccccccccchHHHHHHHHHHcCCHHHHHHhhhccc
Q 002973 243 LDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDK 317 (861)
Q Consensus 243 ld~y~~tG~~~aL~va~~~ad~~~~r~~~~~~~~~~~~~~~~l~~E~GGmne~L~~LY~~TGd~ryL~lA~~F~~ 317 (861)
..+|+.-+.++.|+.+...+|-+.++= ++.+ ..+. -|.- .|-.-++.-||++|||.+||-=|+.|-+
T Consensus 290 ~kAy~VF~Eekyl~aa~ecadvVW~rG--lLkk----g~Gi-chGv-aGNaYvFLsLyRLT~d~kYlyRA~kFae 356 (403)
T KOG2787|consen 290 AKAYQVFKEEKYLEAAMECADVVWKRG--LLKK----GVGI-CHGV-AGNAYVFLSLYRLTGDMKYLYRAKKFAE 356 (403)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhh--hhhc----CCcc-cccc-cCchhhhHhHHHHcCcHHHHHHHHHHHH
Confidence 578999999999999999999998752 1111 0111 1111 1223588889999999999999998853
No 40
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=84.72 E-value=8.3 Score=45.76 Aligned_cols=156 Identities=19% Similarity=0.316 Sum_probs=86.4
Q ss_pred hHhHHHhcCCCCCC-C-CCCCCcCCCcCccccchhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 002973 138 VWSFQKTAGSPTAG-K-AYEGWEDPTCELRGHFVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFP 215 (861)
Q Consensus 138 L~nFR~~AGl~~~g-~-~ygGWE~~d~~l~Gh~~Gh~LsAlA~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~ 215 (861)
||+.|..-||=+.- . .-|-|-.+++-+ |--+=-+-|=+...|..-+|+++.+.-.+--..|..--. .++=|.+..-
T Consensus 228 lW~~RS~igLlGn~idV~tG~W~~~~sGI-GAgiDSfyEYllK~yILfgd~e~lemf~ea~~ai~~y~r-~~~wY~~V~m 305 (622)
T KOG2429|consen 228 LWSLRSGIGLLGNHIDVQTGEWTAPDSGI-GAGIDSFYEYLLKGYILFGDPELLEMFNEAYEAIQKYTR-KGPWYVNVNM 305 (622)
T ss_pred HHhhcCCCCcccceeeccccceecccccc-ccchHHHHHHHHHHheecCCHHHHHHHHHHHHHHHHHhh-cCCeEEEEec
Confidence 77777766653211 1 123487777655 444445666677777789999998877766555544333 1333333221
Q ss_pred c------chhhhhhccCCcccccchhHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH--HHhhhccccccc-------cc
Q 002973 216 S------EQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNTQALKMTKWMVEYFY--NRVQNVITKYSV-------ER 280 (861)
Q Consensus 216 ~------~~~~~~~~l~~~W~pyYt~HkI~aGLld~y~~tG~~~aL~va~~~ad~~~--~r~~~~~~~~~~-------~~ 280 (861)
. .+++. ++..| .+=.+ ++|+-+ +..+-+..|+. ++++-+++.+.. .+
T Consensus 306 ~~G~v~~p~~dS---LqAfw----pGlqv---------LaGDvd--~A~~~h~~y~~vwkkyG~lPEryN~~~~~~~~~~ 367 (622)
T KOG2429|consen 306 DSGSVSLPWFDS---LQAFW----PGLQV---------LAGDVD--DAIRTHLMYFSVWKKYGFLPERYNLATQEPPPKR 367 (622)
T ss_pred CCCceehHHHhh---HHhhc----cchhh---------hhcchH--HHHHHHHHHHHHHHHcCCCcccccccCCCCCCCc
Confidence 0 01221 12222 12122 334422 22223333332 444433333321 33
Q ss_pred ccccccccccchHHHHHHHHHHcCCHHHHHHhhhcc
Q 002973 281 HWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFD 316 (861)
Q Consensus 281 ~~~~l~~E~GGmne~L~~LY~~TGd~ryL~lA~~F~ 316 (861)
-++++.+| +.|+.+.||+.|+|+.||++-..+.
T Consensus 368 ~~YPLRPE---lvEStyyLYrATkdp~yL~vG~~~l 400 (622)
T KOG2429|consen 368 EGYPLRPE---LVESTYYLYRATKDPFYLHVGEDML 400 (622)
T ss_pred ccCCCCHH---HHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 46788889 7899999999999999999987663
No 41
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=84.53 E-value=67 Score=38.49 Aligned_cols=286 Identities=13% Similarity=0.106 Sum_probs=149.2
Q ss_pred cCCcccccCCCe-EeCCCCchHHHHHHHHhhhhc---cCcchhhHhHHHhcCCCCCCCCCCCCcCCCcCccccchhHHH-
Q 002973 99 GDFLKEVSLHDV-KLDPSSLHWRAQQTNLEYLLM---LDVDSLVWSFQKTAGSPTAGKAYEGWEDPTCELRGHFVGHYL- 173 (861)
Q Consensus 99 ~~~l~~~pl~~V-~L~~~~~~~~~~~~~~~~ll~---~d~drlL~nFR~~AGl~~~g~~ygGWE~~d~~l~Gh~~Gh~L- 173 (861)
..-...+|.++- +-.+|.|+ -+--..+.-+++ +.+.++.+-|..--|+...|. ..+.+|-.||+.||=+
T Consensus 382 aEDADSlp~h~~k~k~EGAfy-aWt~dEIqqll~e~~i~p~~~fdl~a~hygvk~sGn-----vs~ssDPhgel~gkNVL 455 (786)
T KOG2244|consen 382 AEDADSLPFHGAKRKKEGAFY-AWTSDEIQQLLGENAIGPASLFDLFAEHYGVKKSGN-----VSSSSDPHGELAGKNVL 455 (786)
T ss_pred ccccCCCcccccccccccceE-EeeHHHHHHHhCCCCCCcchHHHHHHHHcCCCCCCC-----CCCCCCCcccccCceEE
Confidence 344455666543 22234433 211222233333 446677777777778865542 3334556677776632
Q ss_pred ------HHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcCCCccccCCcchhhhhhccCCcccccchhHHHHHHHHHHHH
Q 002973 174 ------SASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYT 247 (861)
Q Consensus 174 ------sAlA~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~~~~~~~l~~~W~pyYt~HkI~aGLld~y~ 247 (861)
|+.|--. ...-+++++-+++--+.|-.+..+.+.=-|.. .. --.|-- +++.|+.-.+.
T Consensus 456 ~vr~s~e~taanf-~lsve~~kkll~e~~e~L~~aR~kRPkPHLDs---Ki-------i~sWnG-----LviSgl~kag~ 519 (786)
T KOG2244|consen 456 IVRNSTEATAANF-SLSVEKYKKLLGECREKLFDARLKRPKPHLDS---KI-------IVSWNG-----LVISGLAKAGK 519 (786)
T ss_pred EEecchHhhHhhc-cccHHHHHHHHHHHHHHHHHHhhcCCCCCccc---hh-------eeeccc-----hhhHHHHHHHH
Confidence 3333211 23345666666666666655554222211111 00 112321 36788888888
Q ss_pred HcCCh-hHHHHHHHHHHHHHHHhhhcccccccccc---ccccccccc-----c---------hHHHHHHHHHHcCCHHHH
Q 002973 248 FADNT-QALKMTKWMVEYFYNRVQNVITKYSVERH---WNSLNEETG-----G---------MNDVLYRLYTITQDPKHL 309 (861)
Q Consensus 248 ~tG~~-~aL~va~~~ad~~~~r~~~~~~~~~~~~~---~~~l~~E~G-----G---------mne~L~~LY~~TGd~ryL 309 (861)
.++.+ +.++-+...++++-+.+-+.-+++-+.+- ...+..|++ + +.-+|.+||+.+|+-.||
T Consensus 520 ~~~a~~~y~~~a~~~a~fl~k~m~d~~eklliR~scY~ga~g~ve~~n~~~~~~~FldDYAFlI~gLLDlYea~~~~e~L 599 (786)
T KOG2244|consen 520 ILKAEPEYTKYAFPVANFLPKDMIDVAEKLLIRGSCYDGASGRVEHSNRPSKAPAFLDDYAFLISGLLDLYEAGGGIEWL 599 (786)
T ss_pred HhhcCHHHHHHHHHHHhhhhhhhhchhhhheeecccccCCCcceeccCCccccchhhhhHHHHHHHHHHHHHccCchHHH
Confidence 77755 99999999999998765433222211100 001111111 1 235899999999999999
Q ss_pred HHhhhcccc--cccch-------hcccCCCCCC---CcccCCccc-----hhHHHHHHHhcCCcHHHHHHHHHHHHhhcc
Q 002973 310 LLAHLFDKP--CFLGL-------LAVQADDISG---FHANTHIPV-----VIGSQMRYEVTGDPLYKVTGTFFMDIVNAS 372 (861)
Q Consensus 310 ~lA~~F~~~--~~~~~-------l~~~~D~l~g---~HanthiP~-----~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~ 372 (861)
+.|.++.+. ..||. ...+.|..-. .| ..--|. ..-..++|-+++.+.|++.|........+
T Consensus 600 kwA~~LQdtqdklFWdgggYF~Se~~~~~v~vRlkeDh-DGAEPs~nSVsahNLvrL~~~~~~e~yl~ka~~ll~~fse- 677 (786)
T KOG2244|consen 600 KWAIKLQDTQDKLFWDGGGYFISEKTDEDVSVRLKEDH-DGAEPSGNSVSAHNLVRLASIVAAESYLNKAHRLLAVFSE- 677 (786)
T ss_pred HHHHHHHHHHHHheecCCceeeeeccCCCcceeecccc-CCCCCCccchhhhhHHHHHHHhhHHHHHHHHHHHHHHHHH-
Confidence 999877432 22221 1111111110 01 011121 23467889999999999988877665542
Q ss_pred ceeeecCCCCCCCCCCCcccccCCCcCcccchhhHHHHHHHHhhhcccCCchHHH
Q 002973 373 HGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYAD 427 (861)
Q Consensus 373 h~yvTGG~g~~E~f~~p~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgD~~YaD 427 (861)
.. +..+-+-.|-|++--+-.-....+-+-||..=-|
T Consensus 678 ------------Rl-------~~vpvAlPeM~~Al~~~q~glk~vvlvGd~~s~d 713 (786)
T KOG2244|consen 678 ------------RL-------REVPVALPEMCCALMISQPGLKQVVLVGDKSSPD 713 (786)
T ss_pred ------------Hh-------hccchhhHHHHHHHHhhccCcceEEEECCCCChH
Confidence 11 1123445577775444444555666666644333
No 42
>PLN02909 Endoglucanase
Probab=79.59 E-value=31 Score=41.15 Aligned_cols=120 Identities=13% Similarity=0.075 Sum_probs=64.2
Q ss_pred ChhHHHHHHHHHHHHHHHHhhcCCCccccCC------cchhhhhhccCCcccccch----------hHHHHHHHHHHHHH
Q 002973 185 NVTLKEKMTAVVSALSECQNKMGSGYLSAFP------SEQFDRFEALKPVWAPYYT----------IHKILAGLLDQYTF 248 (861)
Q Consensus 185 D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~------~~~~~~~~~l~~~W~pyYt----------~HkI~aGLld~y~~ 248 (861)
-+.+++.++.-+|.|.+||. .+|-+-.-- ...|.+=|+... --|.|. --.+-|.|-..++.
T Consensus 119 ~~d~ldeikw~~D~llk~~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~~-~R~~~~i~~~~pgtd~a~~~AAAlA~as~v 195 (486)
T PLN02909 119 LENVRAAIRWGTDYFLKAAS--RKNRLYVQVGDPNLDHQCWVRPENMKT-PRTVLEIDEKTPGTEIAAETAAAMAASSMV 195 (486)
T ss_pred hHHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCCCcccCCChhhccC-CceeEecCCCCCCcHHHHHHHHHHHHHHHh
Confidence 47888999999999999997 554332110 001111111110 011121 12233444344554
Q ss_pred cCC------hhHHHHHHHHHHHHHHHhhhccccccccccccc----ccccccchHHHHHHHHHHcCCHHHHHHhhh
Q 002973 249 ADN------TQALKMTKWMVEYFYNRVQNVITKYSVERHWNS----LNEETGGMNDVLYRLYTITQDPKHLLLAHL 314 (861)
Q Consensus 249 tG~------~~aL~va~~~ad~~~~r~~~~~~~~~~~~~~~~----l~~E~GGmne~L~~LY~~TGd~ryL~lA~~ 314 (861)
-.+ ++.|+.|+++-+|..+. +. .+......+. ...| +..+-+|||+.|||++||+.++.
T Consensus 196 fk~~D~~yA~~lL~~Ak~~y~fA~~~-~g---~y~~~~~~y~s~s~y~DE---l~WAAawLy~aTgd~~Yl~~~~~ 264 (486)
T PLN02909 196 FRHVDHKYSRRLLNKAKLLFKFAKAH-KG---TYDGECPFYCSYSGYNDE---LLWAATWLYKATKKQMYLKYIKH 264 (486)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHhC-CC---CcCCCCCccccCCCcchH---HHHHHHHHHHHhCCHHHHHHHHh
Confidence 332 35788888888888753 11 1111100000 1233 55788899999999999997664
No 43
>PLN02345 endoglucanase
Probab=78.23 E-value=23 Score=42.05 Aligned_cols=122 Identities=14% Similarity=0.101 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCCccccCC-c-----chhhhhhccCCcccccch----------hHHHHHHHHHHHHHc
Q 002973 186 VTLKEKMTAVVSALSECQNKMGSGYLSAFP-S-----EQFDRFEALKPVWAPYYT----------IHKILAGLLDQYTFA 249 (861)
Q Consensus 186 ~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~-~-----~~~~~~~~l~~~W~pyYt----------~HkI~aGLld~y~~t 249 (861)
+.+++.++.-.|.|.+||. .+|-+-.-- . ..|.+=|+.. ..-|.|. --.+-|.|-.++..-
T Consensus 82 ~~~ldelkw~~Dyllk~~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~-~~R~~~~~~~~~pgsd~a~~~AAAlA~as~vf 158 (469)
T PLN02345 82 DSAKDSLKWITDYLINAHP--SENVLYIQVGDPKLDHKCWERPETMD-EKRPLTKINTSSPGSEVAAETAAAMAAASLVF 158 (469)
T ss_pred HHHHHHHhHHHHHHHHhcC--CCCeEEEEecCCCCCcccCCChhhcC-CcceEEecCCCCCCcHHHHHHHHHHHHHHHHh
Confidence 6788889999999999998 554332110 0 0111111111 0112121 112333433444443
Q ss_pred CC------hhHHHHHHHHHHHHHHHhhhcccccccccccc-c--ccccccchHHHHHHHHHHcCCHHHHHHhh
Q 002973 250 DN------TQALKMTKWMVEYFYNRVQNVITKYSVERHWN-S--LNEETGGMNDVLYRLYTITQDPKHLLLAH 313 (861)
Q Consensus 250 G~------~~aL~va~~~ad~~~~r~~~~~~~~~~~~~~~-~--l~~E~GGmne~L~~LY~~TGd~ryL~lA~ 313 (861)
.+ .+.|+-|+++-+|..+.-+......+.....+ . ...| +..+-+|||..|||++||+.+.
T Consensus 159 k~~D~~YA~~lL~~Ak~ly~fa~~~~g~y~~~~~~~~~~Y~s~~~~DE---l~WAAawLy~ATgd~~Yl~~~~ 228 (469)
T PLN02345 159 KSSDSTYSDTLLKHAKQLFNFADKYRGSYSESIPEVQDYYNSTGYGDE---LLWAASWLYHATGDKTYLAYVT 228 (469)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhCCCcccCCCCccCCCCCCcccccH---HHHHHHHHHHHhCCHHHHHHHH
Confidence 33 36788888888888753211100001000001 0 1123 5578889999999999999874
No 44
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=76.76 E-value=5.1 Score=47.03 Aligned_cols=72 Identities=18% Similarity=0.206 Sum_probs=41.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhhccccccccc----ccccccccccchHHHHHHHHHHcCCHHHHHHhhh
Q 002973 239 LAGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVER----HWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHL 314 (861)
Q Consensus 239 ~aGLld~y~~tG~~~aL~va~~~ad~~~~r~~~~~~~~~~~~----~~~~l~~E~GGmne~L~~LY~~TGd~ryL~lA~~ 314 (861)
+..++-+|+.++++.+.++++.|++.+. ++.+ ...+... +......- -+..+|.+||+.|++++||++|..
T Consensus 390 ll~~vra~~~s~D~~Lw~~~~~m~~~~g--LGdi-g~~~~~~~~~~~~~~~~sp--~~L~allEL~~atq~~~~l~lA~~ 464 (557)
T PF06917_consen 390 LLPYVRAYRLSRDPELWDLARTMAHHFG--LGDI-GNAAGKEPRVNMQTDNASP--YLLFALLELYQATQDARYLELADQ 464 (557)
T ss_dssp HHHHHHHHHHS--HHHHHHHHHHHHHTT---EE--TTBTTBS-EE-TT-----H--HHHHHHHHHHHHH--HHHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhcC--cccc-cCccccccccccCCCCCCH--HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3456789999999999999999998553 2211 1100000 00000000 034689999999999999999976
Q ss_pred c
Q 002973 315 F 315 (861)
Q Consensus 315 F 315 (861)
.
T Consensus 465 ~ 465 (557)
T PF06917_consen 465 V 465 (557)
T ss_dssp H
T ss_pred H
Confidence 5
No 45
>PLN02266 endoglucanase
Probab=75.81 E-value=51 Score=39.58 Aligned_cols=126 Identities=9% Similarity=0.007 Sum_probs=63.7
Q ss_pred ChhHHHHHHHHHHHHHHHHhhcCCCccccCC-c-----chhhhhhccCCcccccch----------hHHHHHHHHHHHHH
Q 002973 185 NVTLKEKMTAVVSALSECQNKMGSGYLSAFP-S-----EQFDRFEALKPVWAPYYT----------IHKILAGLLDQYTF 248 (861)
Q Consensus 185 D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~-~-----~~~~~~~~l~~~W~pyYt----------~HkI~aGLld~y~~ 248 (861)
-+.+++.++.-.|.|.+||. .+|-+-.-- . ..|.+=|+... --|.|. .-.+-|+|-.+++.
T Consensus 129 ~pd~Ldelkw~~D~llk~~~--~~~~vy~qVg~~~~Dh~~W~~Pe~~~~-~R~~y~i~~~~pgsd~a~e~AAALAaas~v 205 (510)
T PLN02266 129 LQNAKDAIRWATDYLLKATA--HPDTIYVQVGDANKDHACWERPEDMDT-PRSVFKVDKNTPGSDVAAETAAALAAASLV 205 (510)
T ss_pred cHHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCCCcccCCChhhcCC-CCeeEEeCCCCCchHHHHHHHHHHHHHHHH
Confidence 47888999999999999997 444332110 0 01111111000 001121 11123444344554
Q ss_pred cCC------hhHHHHHHHHHHHHHHHhhhcccccccccccccccccccc----hHHHHHHHHHHcCCHHHHHHhhhc
Q 002973 249 ADN------TQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGG----MNDVLYRLYTITQDPKHLLLAHLF 315 (861)
Q Consensus 249 tG~------~~aL~va~~~ad~~~~r~~~~~~~~~~~~~~~~l~~E~GG----mne~L~~LY~~TGd~ryL~lA~~F 315 (861)
-.+ ++.|+.|+++-+|..+.=+.. .. .+.......-...+| +..+-+|||..|||++||+.++..
T Consensus 206 fk~~D~~yA~~~L~~Ak~ly~fa~~~~g~y-~~-~~~~~~~~~y~s~s~~~DEl~WAAawLy~ATGd~~Yl~~~~~~ 280 (510)
T PLN02266 206 FRKSDPTYSKLLVRRAIRVFQFADKYRGAY-SN-GLKPDVCPFYCSYSGYQDELLWGAAWLHKATKNPTYLNYIQVN 280 (510)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHhCCCCc-cC-CCCcccCCCcccCCcchHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 332 467888888888887531111 00 000000000111122 346778999999999999987654
No 46
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=75.24 E-value=30 Score=38.90 Aligned_cols=111 Identities=21% Similarity=0.136 Sum_probs=69.1
Q ss_pred ChhHHHHHHHHHHHHHH-Hhh--hccccccccccccccccccc--chHHHHHHHHHHcCCHHHHHHhhhc----cccccc
Q 002973 251 NTQALKMTKWMVEYFYN-RVQ--NVITKYSVERHWNSLNEETG--GMNDVLYRLYTITQDPKHLLLAHLF----DKPCFL 321 (861)
Q Consensus 251 ~~~aL~va~~~ad~~~~-r~~--~~~~~~~~~~~~~~l~~E~G--Gmne~L~~LY~~TGd~ryL~lA~~F----~~~~~~ 321 (861)
.+..++.+++-.||+.+ +|. +.+......+ -...|--+| ||...|++.|++-++++||+-|..- .+..++
T Consensus 240 ~~~~~~dVK~sldym~~~rfpsGNyP~s~~~~~-drLVhWcHGApGv~~~L~kAy~VF~Eekyl~aa~ecadvVW~rGlL 318 (403)
T KOG2787|consen 240 QPALLKDVKGSLDYMIQNRFPSGNYPSSEGNKR-DRLVHWCHGAPGVAYTLAKAYQVFKEEKYLEAAMECADVVWKRGLL 318 (403)
T ss_pred chhHHHhhhhHHHHHHHccCCCCCCCcccCCCc-ceeeeeccCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhh
Confidence 34568889999999984 332 1111111111 111222344 7889999999999999999887653 222222
Q ss_pred chhcccCCCCCCCcccCCccc--hhHHHHHHHhcCCcHHHHHHHHHHHHhhcc
Q 002973 322 GLLAVQADDISGFHANTHIPV--VIGSQMRYEVTGDPLYKVTGTFFMDIVNAS 372 (861)
Q Consensus 322 ~~l~~~~D~l~g~HanthiP~--~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~ 372 (861)
. .+. --.|..- ..-+.-+|++|+|.+|+-.|..|...+.++
T Consensus 319 k---kg~-------GichGvaGNaYvFLsLyRLT~d~kYlyRA~kFae~lld~ 361 (403)
T KOG2787|consen 319 K---KGV-------GICHGVAGNAYVFLSLYRLTGDMKYLYRAKKFAEWLLDY 361 (403)
T ss_pred h---cCC-------cccccccCchhhhHhHHHHcCcHHHHHHHHHHHHHHHhh
Confidence 1 110 0122221 123678899999999999999999998753
No 47
>PLN02340 endoglucanase
Probab=74.70 E-value=52 Score=40.38 Aligned_cols=170 Identities=11% Similarity=0.022 Sum_probs=82.4
Q ss_pred hHHHhcCCCCCC-----CCCCCCcCCCcCcc-ccchhHHHHHHHHHHHhc--------CChhHHHHHHHHHHHHHHHHhh
Q 002973 140 SFQKTAGSPTAG-----KAYEGWEDPTCELR-GHFVGHYLSASAHMWAST--------HNVTLKEKMTAVVSALSECQNK 205 (861)
Q Consensus 140 nFR~~AGl~~~g-----~~ygGWE~~d~~l~-Gh~~Gh~LsAlA~~~a~t--------~D~~L~~k~d~~Vd~L~~~Q~~ 205 (861)
.+|..+++.. | .--|||-+.+=.++ |.-.+.-+..|++.+..- +-+.+++.++.-.|.|.+||.
T Consensus 57 ~WR~ds~l~D-g~~~~~DlsGGwyDAGD~vKf~~p~a~t~t~L~w~~~ef~~~~~~~~~~~~~ldeirw~~Dyllk~~~- 134 (614)
T PLN02340 57 KWRGDSGLKD-GFLQGVDLVGGYYDAGDHVKFGLPMAFAVTMLSWGAVDFRKEITALNQMQRTLWAIRWGTDYFIKAHT- 134 (614)
T ss_pred cccccccCCC-cccccCCCCCCceeCCCcceecchhHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhcC-
Confidence 3555555532 2 24478854431222 212233344455444322 237788889999999999987
Q ss_pred cCCCccccC------Ccchhhhhhcc---CCccc-----ccc-hhHHHHHHHHHHHHHcCC------hhHHHHHHHHHHH
Q 002973 206 MGSGYLSAF------PSEQFDRFEAL---KPVWA-----PYY-TIHKILAGLLDQYTFADN------TQALKMTKWMVEY 264 (861)
Q Consensus 206 ~~dGYL~a~------~~~~~~~~~~l---~~~W~-----pyY-t~HkI~aGLld~y~~tG~------~~aL~va~~~ad~ 264 (861)
.++-+-.- .-..|.+=|+. +.... |=- .-..+-|+|-++++.-.+ ++.|+.|+++-+|
T Consensus 135 -~~~~~~~qVGdg~~DH~~W~~PE~~~~~R~~y~i~~~~pgSd~a~e~AAAlAaas~vfk~~D~~YA~~lL~~Ak~ly~f 213 (614)
T PLN02340 135 -QPNVLWGQVGDGDSDHYCWERAEDMTTPRTAYKLDQNHPGSDLAGETAAALAAASKAFKPYNSSYSDLLLVHAKQLFSF 213 (614)
T ss_pred -CCCeEEEEeCCCCcccccCCChhhcCCcCceeecCCCCCccHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 33222110 00112111111 11100 100 001233444444444332 4678888888888
Q ss_pred HHHHhhhccccccccccccc---ccccccchHHHHHHHHHHcCCHHHHHHhhhc
Q 002973 265 FYNRVQNVITKYSVERHWNS---LNEETGGMNDVLYRLYTITQDPKHLLLAHLF 315 (861)
Q Consensus 265 ~~~r~~~~~~~~~~~~~~~~---l~~E~GGmne~L~~LY~~TGd~ryL~lA~~F 315 (861)
..+.-+..-...+...-.+. ...| +..+=+|||+.|||++||+.+...
T Consensus 214 A~~~~g~y~~s~~~a~~~Y~ss~~~DE---l~WAAawLy~ATgd~~Yl~~~~~~ 264 (614)
T PLN02340 214 ADKFRGLYDDSIQNAKKFYTSSGYSDE---LLWAAAWLYRATGDEYYLKYVVDN 264 (614)
T ss_pred HHhCCCCccCCCCccccCCCCCCcchH---HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 87532211000000000010 1233 456788999999999999988754
No 48
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=74.69 E-value=44 Score=42.15 Aligned_cols=156 Identities=19% Similarity=0.185 Sum_probs=87.5
Q ss_pred HhcCChhHHHHHHHHHHHHHHHHh-hcCCCccccCCcchhhhhhccCCcccccchhHHHHHHHHHHHHHcCChhHHHHHH
Q 002973 181 ASTHNVTLKEKMTAVVSALSECQN-KMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNTQALKMTK 259 (861)
Q Consensus 181 a~t~D~~L~~k~d~~Vd~L~~~Q~-~~~dGYL~a~~~~~~~~~~~l~~~W~pyYt~HkI~aGLld~y~~tG~~~aL~va~ 259 (861)
..|+...+++.+.+++..+.+.-+ .+-+==++++ .+.-.-.| +|.-.+.++++..+..=+.
T Consensus 661 ~vtgk~~Y~~ia~~~L~~~~~sv~~~~~~~~iga~-----------~G~~g~~y-------al~~I~~~~~~~~l~~~~~ 722 (963)
T COG4403 661 LVTGKDYYKEIAIKALQDSRKSVNNNLNPINIGAF-----------TGLSGYFY-------ALWKIYSVTRDNYLIQSAE 722 (963)
T ss_pred HhcChHHHHHHHHHHHHHHHHhhhhccCCcccccc-----------cccchhhh-------hhHHHHHhcccHHHHHHHH
Confidence 379999999988887776655433 1111112222 12222233 4455677788887777777
Q ss_pred HHHHHHHHHhhhcccccccccccccccccccchHHHHHHHHHHcCCHHHHHHhhhcccccccchhcccCCCCC-CCcccC
Q 002973 260 WMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQADDIS-GFHANT 338 (861)
Q Consensus 260 ~~ad~~~~r~~~~~~~~~~~~~~~~l~~E~GGmne~L~~LY~~TGd~ryL~lA~~F~~~~~~~~l~~~~D~l~-g~Hant 338 (861)
+.+..+......- +-...++.- .|..-+|+.+|..|.+||.|++|.-.-+..+-+ ..+.|... -.....
T Consensus 723 ~~i~~le~~v~~~-------~~~d~i~Gl-~g~i~~L~~iYk~~~epk~l~~ais~~~~l~~~--~v~~d~s~~~l~gfs 792 (963)
T COG4403 723 NSIRHLEILVQKS-------KDPDFINGL-AGVICVLVSIYKLTDEPKFLELAISLGRILMEK--IVGNDSSETVLLGFS 792 (963)
T ss_pred HHHHHHHHHHhhc-------cCcchhhcc-HHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH--hhccccccceecccc
Confidence 7766655433210 001111111 134578999999999999999997653321111 11122211 112234
Q ss_pred Ccc--chhHHHHHHHhcCCcHHHHHHHH
Q 002973 339 HIP--VVIGSQMRYEVTGDPLYKVTGTF 364 (861)
Q Consensus 339 hiP--~~~G~a~~Y~~TGD~~y~~aa~~ 364 (861)
|.. ++...+.+|++|||+.+++..+.
T Consensus 793 hg~sgi~~tL~~ly~~T~e~~l~~~i~e 820 (963)
T COG4403 793 HGASGIILTLLKLYEATGEESLLKKIKE 820 (963)
T ss_pred cchHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 554 34456888999999999877653
No 49
>PLN00119 endoglucanase
Probab=73.97 E-value=55 Score=39.12 Aligned_cols=125 Identities=10% Similarity=-0.030 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCCccccCC------cchhhhhhcc---CCcc-----ccc-chhHHHHHHHHHHHHHcC
Q 002973 186 VTLKEKMTAVVSALSECQNKMGSGYLSAFP------SEQFDRFEAL---KPVW-----APY-YTIHKILAGLLDQYTFAD 250 (861)
Q Consensus 186 ~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~------~~~~~~~~~l---~~~W-----~py-Yt~HkI~aGLld~y~~tG 250 (861)
+.+++.++.-.|.|.+||. .+|.+-.-- ...|.+=|+. +.+. .|= -..-.+-|.|-.+++.-.
T Consensus 117 ~~~lde~kw~~Dyllk~~~--~~~~~y~qVgdg~~DH~~W~~Pe~~~~~R~~y~i~~~~pgSd~a~~~AAAlA~as~vfk 194 (489)
T PLN00119 117 GNALAALKWATDYLIKAHP--QPNVLYGQVGDGNSDHACWMRPEDMTTPRTSYRIDAQHPGSDLAGETAAAMAAASIAFA 194 (489)
T ss_pred HHHHHHHHHHHHHHHHhcC--CCCeEEEEeccCCCcccccCChhhCCCcCceeecCCCCCchHHHHHHHHHHHHHHHHcc
Confidence 5678888889999999996 443332100 0011111111 1110 010 011223344434444433
Q ss_pred C------hhHHHHHHHHHHHHHHHhhhccccccccccccc---ccccccchHHHHHHHHHHcCCHHHHHHhhhc
Q 002973 251 N------TQALKMTKWMVEYFYNRVQNVITKYSVERHWNS---LNEETGGMNDVLYRLYTITQDPKHLLLAHLF 315 (861)
Q Consensus 251 ~------~~aL~va~~~ad~~~~r~~~~~~~~~~~~~~~~---l~~E~GGmne~L~~LY~~TGd~ryL~lA~~F 315 (861)
+ ++.|+.|+++-+|..+.-+..-...+.....+. ...| +..+=+|||+.|||+.|++.++..
T Consensus 195 ~~D~~yA~~lL~~Ak~~y~fA~~~~g~y~~~~~~~~g~Y~ss~~~DE---l~WAAawLY~aTgd~~Yl~~~~~~ 265 (489)
T PLN00119 195 PSDPAYASILIGHAKDLFEFAKAHPGLYQNSIPNAGGFYASSGYEDE---LLWAAAWLHRATNDQTYLDYLTQA 265 (489)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCCCCCCchhhH---HHHHHHHHHHHhCCHHHHHHHHhc
Confidence 2 457888888888887531110000000011110 1123 556788999999999999987644
No 50
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=73.37 E-value=4.9 Score=44.49 Aligned_cols=177 Identities=15% Similarity=0.088 Sum_probs=95.9
Q ss_pred HHHhcCChhHHHHHHHHHHHHHHHHhhcCCCccccCCcchhhhhh----ccCCcccccchhHHHHHHHHHHH-HHcCChh
Q 002973 179 MWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFE----ALKPVWAPYYTIHKILAGLLDQY-TFADNTQ 253 (861)
Q Consensus 179 ~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~~~~~~----~l~~~W~pyYt~HkI~aGLld~y-~~tG~~~ 253 (861)
.+..++++.+.+.+..+++.|.+... ... .. . ......|. +..-.|. .++ |+..|...| +.+++++
T Consensus 118 ~~~~~~~~~~l~~i~~~~~~l~~~~~--~~~-~~-~-~~~~~~~~~~~~~~G~aHG--~~G--i~~~L~~~~~~~~~~~~ 188 (355)
T PF05147_consen 118 LYEKTKDPKYLDIIEKILEKLLESII--NDD-PS-E-NQIGSEWKEGFINLGFAHG--IAG--ILYALLRLYKKGTKDPE 188 (355)
T ss_dssp HHHHHCCHHS-HHHHHHHHHCCCHHC--CCH-TC-C-GSSSHHCHTTBEE-STTTS--HHH--HHHHHCHCCHHT--HHH
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHh--hcc-cc-c-CCCccccCCCCccCCcccc--HHH--HHHHHHHhhhcccCchh
Confidence 34456888888888888888877766 211 00 0 00111111 0111111 122 455565667 5888999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccc----ccccc-cccccccc--chHHHHHHHHHHcCCHHHHHHhhhcccccccchhcc
Q 002973 254 ALKMTKWMVEYFYNRVQNVITKYS----VERHW-NSLNEETG--GMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAV 326 (861)
Q Consensus 254 aL~va~~~ad~~~~r~~~~~~~~~----~~~~~-~~l~~E~G--Gmne~L~~LY~~TGd~ryL~lA~~F~~~~~~~~l~~ 326 (861)
.++++.++.+|..+........+. ..... ....| +| ||..++.++++.++++.+.+.+..+.+.....
T Consensus 189 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WC-~G~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 263 (355)
T PF05147_consen 189 YLKLIEQILNFLLKHFNTDDGGWPDNRNNSNYKSRPSWC-YGSPGILLALLKAYKILDDEEYDEEAEQALESILQK---- 263 (355)
T ss_dssp HHHCHHHHHHHHHHC--TGCCT--SECTHHHHHC--SSS-SSHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHhcCcccCCCCCCCCccccccccccc-cCcHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc----
Confidence 999999999999876532111111 00000 01111 34 78899999999999999999888664321110
Q ss_pred cCCCCCCCcccCCccc--hhHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 002973 327 QADDISGFHANTHIPV--VIGSQMRYEVTGDPLYKVTGTFFMDIVNA 371 (861)
Q Consensus 327 ~~D~l~g~HanthiP~--~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~ 371 (861)
.........-|.-. +.-...+|+.++++.|++.++.+++.+.+
T Consensus 264 --~~~~~~~~lCHG~aG~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (355)
T PF05147_consen 264 --GLFLNNPSLCHGTAGILEILLDLYKYTGDEEYKELANKLIQKLLS 308 (355)
T ss_dssp ---TCTTSS-STTSHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHCT
T ss_pred --cccCCCCceeCchHHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 00101112234432 23357779999999999999999988874
No 51
>PLN02175 endoglucanase
Probab=71.48 E-value=35 Score=40.59 Aligned_cols=104 Identities=13% Similarity=0.004 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhcccccccc-ccccc----ccccccchHHHHHHHHHHcCCHHHHHHhhhcccccccchhcc
Q 002973 252 TQALKMTKWMVEYFYNRVQNVITKYSVE-RHWNS----LNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAV 326 (861)
Q Consensus 252 ~~aL~va~~~ad~~~~r~~~~~~~~~~~-~~~~~----l~~E~GGmne~L~~LY~~TGd~ryL~lA~~F~~~~~~~~l~~ 326 (861)
++.|+.|+++-+|..+.-+......... .-.++ ...| +..+-+|||..|||++||+.++.+.....
T Consensus 194 ~~lL~~Ak~ly~fA~~~~g~y~~~~~~~~~~~Y~s~s~y~DE---l~WAAawLY~ATgd~~Yl~~~~~~~~~~~------ 264 (484)
T PLN02175 194 RLLLATAKKVMQFAIQYRGAYSDSLSSSVCPFYCSYSGYKDE---LMWGASWLLRATNDPYYANFIKSLGGGDQ------ 264 (484)
T ss_pred HHHHHHHHHHHHHHHhCCCCcccCccccccCccccCCCccHH---HHHHHHHHHHHhCCHHHHHHHHHcCCCCC------
Confidence 3678888888888875322110000000 00011 1123 34677899999999999987765421100
Q ss_pred cCCCCCCCcccCCccchhHHHHH-HHh------cCCcHHHHHHHHHHHHhhc
Q 002973 327 QADDISGFHANTHIPVVIGSQMR-YEV------TGDPLYKVTGTFFMDIVNA 371 (861)
Q Consensus 327 ~~D~l~g~HanthiP~~~G~a~~-Y~~------TGD~~y~~aa~~fwd~V~~ 371 (861)
... +. =--+..|..++ +++ ++.+.|++.+++|+.....
T Consensus 265 -~~~----~~--Wd~k~~g~~vLla~~~~~~~~~~~~~y~~~~~~~~~~~~~ 309 (484)
T PLN02175 265 -PDI----FS--WDNKYAGAYVLLSRRALLNKDSNFEQYKQAAENFICKILP 309 (484)
T ss_pred -CCc----cC--CcCHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHhccC
Confidence 000 00 00133444433 332 3445889999999887653
No 52
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=70.34 E-value=2.1e+02 Score=33.14 Aligned_cols=258 Identities=15% Similarity=0.088 Sum_probs=145.6
Q ss_pred HhHHHhcCCCCCCCCCCCCcCCC------cCccccchhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhc-CCCcc
Q 002973 139 WSFQKTAGSPTAGKAYEGWEDPT------CELRGHFVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKM-GSGYL 211 (861)
Q Consensus 139 ~nFR~~AGl~~~g~~ygGWE~~d------~~l~Gh~~Gh~LsAlA~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~-~dGYL 211 (861)
-+|-.++|+++.+..|=.+-..+ .+=+.++.-.-+=.-|.++..-..+..++.++.=++.+.+.=.-- +.||.
T Consensus 21 lp~w~~~g~d~~~GGffe~l~~dG~~~~~~~rr~~~~~Rqvy~fA~A~~~g~~~~~~~~v~hG~~y~~~~~R~~~gg~~~ 100 (388)
T COG2942 21 LPFWLNAGVDTEGGGFFEALDRDGQILDETDRRLRVQARQVYCFAVAGLLGWRGPWLDAVAHGIAYLARVGRDPEGGWYF 100 (388)
T ss_pred hhhhcccCcCCCCCCceeeeccCCccccCCCceeeeehhHHHHHHHHHHhcCCccHHHHHHhHHHHHHhcCcCCCCCeEE
Confidence 36778888876553111121111 112222333333334444444446678888888888877553211 33333
Q ss_pred ccCCc-chhhhhhccCCcccccchhHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhhccccccccccccccccccc
Q 002973 212 SAFPS-EQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETG 290 (861)
Q Consensus 212 ~a~~~-~~~~~~~~l~~~W~pyYt~HkI~aGLld~y~~tG~~~aL~va~~~ad~~~~r~~~~~~~~~~~~~~~~l~~E~G 290 (861)
-.-.. ++-+ ...+ .|+-=-++.++ +++..+|+++|.++....-+.+.+++.+. ++....
T Consensus 101 ~~~~dg~~~D---at~d----~Y~haFallA~-A~~a~a~~~~a~~~~~~a~~~l~~~~~~~-------~~pl~~----- 160 (388)
T COG2942 101 ALDNDGGPVD---ATKD----LYGHAFALLAA-AHAATAGPPRADELLDEALDVLERRFWRE-------EHPLGG----- 160 (388)
T ss_pred EecCCCCccc---ccHh----HHHHHHHHHHH-HHHHhcCChhHHHHHHHHHHHHHHHHhhh-------cCCccc-----
Confidence 22111 0100 0111 22222244443 77888999999988888888887766431 111100
Q ss_pred chHHHHHHHHHHcCCHHHHHHhhhcccccccchhcccCCCCCCCcccCCccchhHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 002973 291 GMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVN 370 (861)
Q Consensus 291 Gmne~L~~LY~~TGd~ryL~lA~~F~~~~~~~~l~~~~D~l~g~HanthiP~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~ 370 (861)
|+.| .+ +--| +-+|.|.-+++.+...|++||++.|++.+...-+.+.
T Consensus 161 ---------~e~~-------------~~-~~~p----------l~sNp~MHl~EA~LA~~e~~~~~~~~~~A~~ia~l~~ 207 (388)
T COG2942 161 ---------FEED-------------NP-GSAP----------LGSNPHMHLLEAMLAAYEATGEKTWLDRADRIADLII 207 (388)
T ss_pred ---------cccc-------------CC-CCCc----------cCCCcchHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 0000 00 0011 1235666677777888888888888877777766665
Q ss_pred ccceeeecCCC-CCCCCCCCcccccCCCcCcccchhhHHHHHHHHhhhcccCCchHHHHHHHHHhhhhcccccCCCCCeE
Q 002973 371 ASHGYATGGTS-AGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTNGVLSIQRGTEPGVM 449 (861)
Q Consensus 371 ~~h~yvTGG~g-~~E~f~~p~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgD~~YaD~~ERaLyN~iLa~q~~~d~g~~ 449 (861)
.+ ++-+..| ..|+|..+..-.........|-==-.++++|..++-+..++..-.+..=|..-|++--+.++ +.|.+
T Consensus 208 ~r--f~d~~~g~v~E~fd~dW~p~~~frg~~~ePGH~fEW~~Lll~~a~~~~~~~l~~~A~~lf~~a~~~g~d~-~~gg~ 284 (388)
T COG2942 208 SR--FADAESGLVREHFDHDWNPAHGFRGRGIEPGHQFEWAWLLLDIARRRGRAWLIEAARRLFDIAVADGWDP-ERGGA 284 (388)
T ss_pred HH--hhhcccCcHhhhccccCCcCCCcccCCCCCchHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhccCc-ccCeE
Confidence 32 2233333 36888665432221223556766778899999999999999888888878888887778876 77777
Q ss_pred EEe
Q 002973 450 IYM 452 (861)
Q Consensus 450 ~Y~ 452 (861)
+|-
T Consensus 285 ~~s 287 (388)
T COG2942 285 YYS 287 (388)
T ss_pred EEE
Confidence 654
No 53
>PLN02613 endoglucanase
Probab=68.53 E-value=54 Score=39.26 Aligned_cols=122 Identities=14% Similarity=0.130 Sum_probs=63.3
Q ss_pred CChhHHHHHHHHHHHHHHHHhh-------cCCCccccCCcchhhhhhc---cCCccc-----ccch-hHHHHHHHHHHHH
Q 002973 184 HNVTLKEKMTAVVSALSECQNK-------MGSGYLSAFPSEQFDRFEA---LKPVWA-----PYYT-IHKILAGLLDQYT 247 (861)
Q Consensus 184 ~D~~L~~k~d~~Vd~L~~~Q~~-------~~dGYL~a~~~~~~~~~~~---l~~~W~-----pyYt-~HkI~aGLld~y~ 247 (861)
+.+.+++.++.-.|.|.+||.. .+||-.. . ..|.+=|. .+.... |--. .-..-|+|-.+++
T Consensus 110 ~~~d~ldeikw~lD~llkm~~~~~~~~~QVGdg~~d--H-~~W~~Pe~~~~~R~~~~~t~~~pgTd~a~~~AAALAaas~ 186 (498)
T PLN02613 110 QLGYLRSAIRWGTDFILRAHTSPTTLYTQVGDGNAD--H-QCWERPEDMDTPRTLYKITSSSPGSEAAGEAAAALAAASL 186 (498)
T ss_pred CchHHHHHHHHHHHHHHHhccCCCeEEEEeCCCCcc--c-cccCCccccCCCCeeEecCCCCCccHHHHHHHHHHHHHHH
Confidence 3578889999999999999862 1344211 0 01111111 111111 1100 1113334434445
Q ss_pred HcCC------hhHHHHHHHHHHHHHHHhhhccccccccccccc----ccccccchHHHHHHHHHHcCCHHHHHHhhhc
Q 002973 248 FADN------TQALKMTKWMVEYFYNRVQNVITKYSVERHWNS----LNEETGGMNDVLYRLYTITQDPKHLLLAHLF 315 (861)
Q Consensus 248 ~tG~------~~aL~va~~~ad~~~~r~~~~~~~~~~~~~~~~----l~~E~GGmne~L~~LY~~TGd~ryL~lA~~F 315 (861)
.-.+ ++.|+.|+++-+|..+.-+ .+....-.+. ...| +..+-+|||..|||++||+.++..
T Consensus 187 vfk~~D~~yA~~~L~~Ak~ly~~a~~~~g----~y~~~~~~y~s~s~~~DE---l~WAAawLy~aTGd~~Yl~~~~~~ 257 (498)
T PLN02613 187 VFKDVDSSYSSKLLNHARSLFEFADKYRG----SYQASCPFYCSYSGYQDE---LLWAAAWLYKATGEKKYLNYVISN 257 (498)
T ss_pred hcccCCHHHHHHHHHHHHHHHHHHHhCCC----CcCCCCCcccccCccchH---HHHHHHHHHHHhCCHHHHHHHHhc
Confidence 4332 3678888888888865311 1111000000 1123 456778999999999999987653
No 54
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=68.02 E-value=8.4 Score=44.30 Aligned_cols=80 Identities=21% Similarity=0.285 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhh--ccccc--cc------ccccc--cccccccchHHHHHHHHHHcC
Q 002973 237 KILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQN--VITKY--SV------ERHWN--SLNEETGGMNDVLYRLYTITQ 304 (861)
Q Consensus 237 kI~aGLld~y~~tG~~~aL~va~~~ad~~~~r~~~--~~~~~--~~------~~~~~--~l~~E~GGmne~L~~LY~~TG 304 (861)
.|+-|||.+|.++|++-.|+.|..++|-+...|+. .++-- .+ ..+|. +--.|.--+..-+-.|-++||
T Consensus 179 RvLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~sps~IPysdVnL~~~~A~~p~~~~~SStaEvttiQlEfr~Ls~ltg 258 (546)
T KOG2431|consen 179 RVLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFSSPSPIPYSDVNLGTGTAHPPRWTGDSSTAEVTTIQLEFRYLSRLTG 258 (546)
T ss_pred HHHhhhhhhhccccchhHHHHHHHHHHHHHHhhcCCCCCCcceeecCCCcccCCCCCCccchhhheeeeeeHHHHHhhcC
Confidence 37899999999999999999999999999887742 11100 00 01121 111233233445677899999
Q ss_pred CHHHHHHhhhcc
Q 002973 305 DPKHLLLAHLFD 316 (861)
Q Consensus 305 d~ryL~lA~~F~ 316 (861)
|++|-++|.+..
T Consensus 259 d~kY~~~a~kv~ 270 (546)
T KOG2431|consen 259 DPKYEELAEKVT 270 (546)
T ss_pred CchHHHHHHHHH
Confidence 999999998864
No 55
>PF15095 IL33: Interleukin 33; PDB: 2KLL_A.
Probab=67.87 E-value=48 Score=35.33 Aligned_cols=87 Identities=20% Similarity=0.219 Sum_probs=49.0
Q ss_pred cccEEEEEEecCCCccccccccccCCceee--ecCCCCCCceeeeeccccceEEeCCCCCCCCceEEEeecCCCCCceEE
Q 002973 698 ALHATFRLIMKEESSSEVSSLKDVIGKSVM--LEPFDFPGMLVVQQGTDGELVVSDSPKEGDSSVFRLVAGLDGKDETIS 775 (861)
Q Consensus 698 ~~~~~fr~~~~~~~~~~~~~p~~~~g~~v~--lepfd~Pg~~v~~~~~~~~l~v~~~~~~~~~s~f~~vpgl~g~~g~vs 775 (861)
-=-+.||.......| -.+.-+.+|+.+| |.|-....-.+--...|+.+-+.---...+|..|.+.--- ....||
T Consensus 157 KDKVLlryYeSq~pS--~esgdgvDGk~LMVnlSPtkdkDf~LHAN~keHSVeLqKcE~~lpdQaff~lh~~--ss~~vs 232 (268)
T PF15095_consen 157 KDKVLLRYYESQCPS--SESGDGVDGKKLMVNLSPTKDKDFLLHANNKEHSVELQKCENPLPDQAFFVLHKK--SSECVS 232 (268)
T ss_dssp ---EEEEEEE----T--TTS----S---EEEEEESS--SSEEEEEETTTTEEEEEE--SS--TTT-EEEEE---SSS-EE
T ss_pred cceEEEEeccCCCCc--ccCCCCccceEEEEEcCCccchheEEecCCccceeeeeecCCCCCcceeEEEecC--CCceeE
Confidence 445778877543322 1223446788877 8899888888877777888877655556788888887433 357999
Q ss_pred EeccCCCCeeEEe
Q 002973 776 LEAVNQNGCFVYS 788 (861)
Q Consensus 776 le~~~~pg~~~~~ 788 (861)
||-.|+||.|+-+
T Consensus 233 feck~~pg~~igv 245 (268)
T PF15095_consen 233 FECKNNPGVFIGV 245 (268)
T ss_dssp EEESSSTTEEEEE
T ss_pred EEecCCCceEEee
Confidence 9999999999976
No 56
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=67.51 E-value=16 Score=40.38 Aligned_cols=131 Identities=19% Similarity=0.240 Sum_probs=75.5
Q ss_pred HHHHHHHHHH-HhcCChhHHHHHHHHHHHHHHHHhhcCCCccccCCcchhhhhhccCCcccccchhHHHHHHHHHHHHHc
Q 002973 171 HYLSASAHMW-ASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFA 249 (861)
Q Consensus 171 h~LsAlA~~~-a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~~~~~~~l~~~W~pyYt~HkI~aGLld~y~~t 249 (861)
=.+-+++.++ ..++++++++.+..+++.+.+.+.....+|..........+ +..|.-=-.+ |...++..+...
T Consensus 171 Gi~~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~WC~G~~G--i~~~~~~~~~~~ 244 (355)
T PF05147_consen 171 GILYALLRLYKKGTKDPEYLKLIEQILNFLLKHFNTDDGGWPDNRNNSNYKS----RPSWCYGSPG--ILLALLKAYKIL 244 (355)
T ss_dssp HHHHHHCHCCHHT--HHHHHHCHHHHHHHHHHC--TGCCT--SECTHHHHHC------SSSSSHHH--HHHHHHHHHHHC
T ss_pred HHHHHHHHhhhcccCchhHHHHHHHHHHHHHHhcCcccCCCCCCCCcccccc----ccccccCcHH--HHHHHHHHHHhh
Confidence 3455566666 37789999999999999999888644566443322111000 2223211122 444556778888
Q ss_pred CChhHHHHHHHHHHHHHHHhhhcccccccccccccc-cccccchHHHHHHHHHHcCCHHHHHHhhhcc
Q 002973 250 DNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSL-NEETGGMNDVLYRLYTITQDPKHLLLAHLFD 316 (861)
Q Consensus 250 G~~~aL~va~~~ad~~~~r~~~~~~~~~~~~~~~~l-~~E~GGmne~L~~LY~~TGd~ryL~lA~~F~ 316 (861)
+++...+.+...+..+.++-. . . .-.++ |.- .|+-+.|..+|+.|++++|.+.|+.+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~-~----~---~~~~lCHG~-aG~~~~l~~~~~~~~~~~~~~~~~~~~ 303 (355)
T PF05147_consen 245 DDEEYDEEAEQALESILQKGL-F----L---NNPSLCHGT-AGILEILLDLYKYTGDEEYKELANKLI 303 (355)
T ss_dssp T-HHHHHHHHHHHHHHHHH-T-C----T---TSS-STTSH-HHHHHHHHHHHHHH--HCCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHccc-c----C---CCCceeCch-HHhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999988888888877764210 0 0 00112 222 267789999999999999999998873
No 57
>PLN02308 endoglucanase
Probab=66.22 E-value=1e+02 Score=36.85 Aligned_cols=123 Identities=7% Similarity=-0.046 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCCccccCC-c-----chhhhhhccCCcccccch----------hHHHHHHHHHHHHHc
Q 002973 186 VTLKEKMTAVVSALSECQNKMGSGYLSAFP-S-----EQFDRFEALKPVWAPYYT----------IHKILAGLLDQYTFA 249 (861)
Q Consensus 186 ~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~-~-----~~~~~~~~l~~~W~pyYt----------~HkI~aGLld~y~~t 249 (861)
+.+++.++.-.|.|.+||. ++|.+-.-- . ..|.+=|+... --|.|. .-.+-|.|-.+++.-
T Consensus 112 ~~~ldeikw~~D~llkm~~--~~~~vy~qVg~~~~dh~~W~~Pe~~~~-~R~~y~~~~~~pgSd~a~~~AAAlA~as~vf 188 (492)
T PLN02308 112 ENAVKAVKWATDYLMKATA--IPNVVYVQVGDAYSDHNCWERPEDMDT-LRTVYKIDPSHPGSDVAGETAAALAAASIVF 188 (492)
T ss_pred HHHHHHHHHHHHHHHHhcC--CCCeEEEEecCCCCCccCCCChhHcCC-cceEEecCCCCCcchHHHHHHHHHHHHHHhc
Confidence 4566778888999999998 665542110 0 01111111100 001111 122334444455544
Q ss_pred CC------hhHHHHHHHHHHHHHHHhhhccccccccc-cccc----ccccccchHHHHHHHHHHcCCHHHHHHhhh
Q 002973 250 DN------TQALKMTKWMVEYFYNRVQNVITKYSVER-HWNS----LNEETGGMNDVLYRLYTITQDPKHLLLAHL 314 (861)
Q Consensus 250 G~------~~aL~va~~~ad~~~~r~~~~~~~~~~~~-~~~~----l~~E~GGmne~L~~LY~~TGd~ryL~lA~~ 314 (861)
.+ ++.|+.|+++-+|..+.=+.......... -.+. ...| +..+-+|||+.|||++||+.+..
T Consensus 189 ~~~D~~YA~~lL~~Ak~ly~fa~~~~g~y~~~~~~~~~~~Y~~~s~~~DE---l~WAAawLy~ATgd~~Yl~~~~~ 261 (492)
T PLN02308 189 RKRDPAYSRLLLDRAVRVFAFADKYRGAYSSSLHAAVCPFYCDFNGYQDE---LLWGAAWLHKASRRREYREYIVK 261 (492)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccCCCcCCCCcccHH---HHHHHHHHHHHhCCHHHHHHHHH
Confidence 32 46788888888888753211100000000 0000 1223 45678899999999999997754
No 58
>PLN02420 endoglucanase
Probab=65.56 E-value=1e+02 Score=37.26 Aligned_cols=169 Identities=11% Similarity=0.046 Sum_probs=79.8
Q ss_pred HHHhcCCCCCC-----CCCCCCcCCCcCccccc-hhHHHHHHHHHHHhc--------CChhHHHHHHHHHHHHHHHHhhc
Q 002973 141 FQKTAGSPTAG-----KAYEGWEDPTCELRGHF-VGHYLSASAHMWAST--------HNVTLKEKMTAVVSALSECQNKM 206 (861)
Q Consensus 141 FR~~AGl~~~g-----~~ygGWE~~d~~l~Gh~-~Gh~LsAlA~~~a~t--------~D~~L~~k~d~~Vd~L~~~Q~~~ 206 (861)
+|..+++.. | .--|||-..+=.++=.+ .+--+..|++.|..- +-+.+++.++.-+|.|.+||.
T Consensus 69 Wr~~s~~~D-g~~~~~DlsGGwyDAGD~~Kf~~p~a~t~~~L~w~~~ef~d~~~~~g~~~d~Ldeikw~lD~llk~~~-- 145 (525)
T PLN02420 69 WRDHSGLTD-GLEQGVDLVGGYHDAGDHVKFGLPMAFTVTMLSWSVIEYGDQLASTGELSHALEAIKWGTDYFIKAHT-- 145 (525)
T ss_pred ccccCcCcC-CCcCcccCCCcceecCccceecchHHHHHHHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhCc--
Confidence 566666542 2 23478854431221111 223334444444322 347888999999999999997
Q ss_pred CCCccccC------Ccchhhhhhc---cCCccc-----ccch-hHHHHHHHHHHHHHcCC------hhHHHHHHHHHHHH
Q 002973 207 GSGYLSAF------PSEQFDRFEA---LKPVWA-----PYYT-IHKILAGLLDQYTFADN------TQALKMTKWMVEYF 265 (861)
Q Consensus 207 ~dGYL~a~------~~~~~~~~~~---l~~~W~-----pyYt-~HkI~aGLld~y~~tG~------~~aL~va~~~ad~~ 265 (861)
.++-+-.- .-..|.+=|. .+.+.. |--. .-..-|.|-.+++.-.+ ++.|+.|+++-+|.
T Consensus 146 ~~~~~~~qvGdg~~DH~~w~~Pe~~~~~R~~~~i~~~~pgsd~aa~~AAALA~AS~vfk~~D~~YA~~~L~~Ak~ly~fA 225 (525)
T PLN02420 146 SPNVLWAEVGDGDTDHYCWQRPEDMTTSRRAFKIDENNPGSDIAGETAAAMAAASIVFRSTNPHYSHLLLHHAQQLFEFG 225 (525)
T ss_pred CCCceEEeeCCCCcccccccChhhccccCceEEecCCCCccHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 32221100 0001111111 111100 0000 11122333234443332 35788888888877
Q ss_pred HHHhhhccccccc-ccccc---cccccccchHHHHHHHHHHcCCHHHHHHhhhc
Q 002973 266 YNRVQNVITKYSV-ERHWN---SLNEETGGMNDVLYRLYTITQDPKHLLLAHLF 315 (861)
Q Consensus 266 ~~r~~~~~~~~~~-~~~~~---~l~~E~GGmne~L~~LY~~TGd~ryL~lA~~F 315 (861)
.+.-+..-...+. ..... ....| +..+-+|||+.|||+.||+.+...
T Consensus 226 ~~~~g~y~~~~~~~~g~Y~s~s~y~DE---l~WAAawLY~ATgd~~Yl~~a~~~ 276 (525)
T PLN02420 226 DKYRGKYDESLKVVKSYYASVSGYMDE---LLWGATWLYRATDNEHYMSYVVDM 276 (525)
T ss_pred HhcCCccCCCCcccCCCCCCcCcccHH---HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 6421111000000 00000 01233 557888999999999999988654
No 59
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=63.56 E-value=7.1 Score=43.28 Aligned_cols=50 Identities=18% Similarity=0.264 Sum_probs=39.8
Q ss_pred hhHHHHHHHHhhhcccCCchHHHHHHHHHhhhhcccccCCCCCeEEEeccCCC
Q 002973 405 TTYNMLKVSRHLFRWTKEMVYADYYERALTNGVLSIQRGTEPGVMIYMLPLGR 457 (861)
Q Consensus 405 as~nmlkl~~~Lf~~tgD~~YaD~~ERaLyN~iLa~q~~~d~g~~~Y~~PL~~ 457 (861)
+|+.-|++.-++++.++|.+|-|-++|++ |-||++|++ +||...|+ |++.
T Consensus 45 aT~~e~~fLa~~y~~t~d~~y~~A~~rgl-d~LL~aQyp-nGGWPQf~-p~~~ 94 (290)
T TIGR02474 45 ATVTEIRYLAQVYQQEKNAKYRDAARKGI-EYLLKAQYP-NGGWPQFY-PLKG 94 (290)
T ss_pred cHHHHHHHHHHHHHhcCchhHHHHHHHHH-HHHHhhhCC-CCCcCccc-CCcC
Confidence 45566677777999999999999999998 899999997 66654444 7654
No 60
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=63.50 E-value=24 Score=41.61 Aligned_cols=87 Identities=16% Similarity=0.276 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcCCCccccCCcchhhhhhccCCcccccchhHHHHHHHHHHHHH
Q 002973 169 VGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTF 248 (861)
Q Consensus 169 ~Gh~LsAlA~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~~~~~~~l~~~W~pyYt~HkI~aGLld~y~~ 248 (861)
.++||=+++.+|+.++|++|.+-+..|... + +=|=|+..+... .+.+.....-.|| ++.++|+.|++
T Consensus 386 ~~~yll~~vra~~~s~D~~Lw~~~~~m~~~----~---gLGdig~~~~~~-~~~~~~~~~~sp~-----~L~allEL~~a 452 (557)
T PF06917_consen 386 DPDYLLPYVRAYRLSRDPELWDLARTMAHH----F---GLGDIGNAAGKE-PRVNMQTDNASPY-----LLFALLELYQA 452 (557)
T ss_dssp -HHHHHHHHHHHHHS--HHHHHHHHHHHHH----T---T-EE-TTBTTBS--EE-TT-----HH-----HHHHHHHHHHH
T ss_pred chhHhHHHHHHHHcCCCHHHHHHHHHHHhh----c---CcccccCccccc-cccccCCCCCCHH-----HHHHHHHHHHH
Confidence 579999999999999999998877776553 3 455555443211 1111122334455 45567899999
Q ss_pred cCChhHHHHHHHHHHHHHHH
Q 002973 249 ADNTQALKMTKWMVEYFYNR 268 (861)
Q Consensus 249 tG~~~aL~va~~~ad~~~~r 268 (861)
|++++.|+.|.++++-+.++
T Consensus 453 tq~~~~l~lA~~~g~~l~~~ 472 (557)
T PF06917_consen 453 TQDARYLELADQVGENLFEQ 472 (557)
T ss_dssp H--HHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999988754
No 61
>PLN03009 cellulase
Probab=63.01 E-value=1.1e+02 Score=36.53 Aligned_cols=124 Identities=9% Similarity=-0.074 Sum_probs=62.7
Q ss_pred ChhHHHHHHHHHHHHHHHHhhcCCCccccCC-c-----chhhhhhccCCcccccch----------hHHHHHHHHHHHHH
Q 002973 185 NVTLKEKMTAVVSALSECQNKMGSGYLSAFP-S-----EQFDRFEALKPVWAPYYT----------IHKILAGLLDQYTF 248 (861)
Q Consensus 185 D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~-~-----~~~~~~~~l~~~W~pyYt----------~HkI~aGLld~y~~ 248 (861)
-+.+++.++.-+|.|.+||. .+|-+-.-- . ..|.+=|+... --|.|. .-.+-|.|-..++.
T Consensus 112 ~~diLdeikw~~D~llkm~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~~-~R~~~~is~~~p~sd~a~~~AAalA~as~v 188 (495)
T PLN03009 112 LRNSLVAIRWATDYLLKTVS--QPNRIFVQVGDPIADHNCWERPEDMDT-PRTVYAVNAPNPASDVAGETAAALAASSMA 188 (495)
T ss_pred cHHHHHHHHHHHHHHHHccc--CcCeEEEEeCCCCCCcccCcChhhcCC-CCeEEEecCCCCccHHHHHHHHHHHHHHHh
Confidence 46788888889999999987 443322100 0 00111011000 001121 12334444344554
Q ss_pred cCC------hhHHHHHHHHHHHHHHHhhhccccc---ccc-ccccc---ccccccchHHHHHHHHHHcCCHHHHHHhhh
Q 002973 249 ADN------TQALKMTKWMVEYFYNRVQNVITKY---SVE-RHWNS---LNEETGGMNDVLYRLYTITQDPKHLLLAHL 314 (861)
Q Consensus 249 tG~------~~aL~va~~~ad~~~~r~~~~~~~~---~~~-~~~~~---l~~E~GGmne~L~~LY~~TGd~ryL~lA~~ 314 (861)
-.+ ++.|+-|+++-+|..+.-+..-... +.. ..... ...| +..+-+|||+.|||++||+-++.
T Consensus 189 fk~~D~~YA~~ll~~Ak~ly~~a~~~~g~y~~~~~~~~g~~~~Y~~~s~~~DE---~~WAAawLy~aTgd~~Yl~~~~~ 264 (495)
T PLN03009 189 FRSSDPGYSETLLRNAIKTFQFADMYRGAYSDNDDIKDGVCPFYCDFDGYQDE---LLWGAAWLRRASGDDSYLNYIEN 264 (495)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHcCCCccCCccccCccccCcCCcccccHH---HHHHHHHHHHHhCCHHHHHHHHH
Confidence 432 3578888888888875321110000 000 00000 1233 45688899999999999998754
No 62
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=61.67 E-value=34 Score=38.49 Aligned_cols=143 Identities=17% Similarity=0.361 Sum_probs=82.4
Q ss_pred CCCCCcCCCcCccccchhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcCCCccccCCcchhhhhhccCCccccc
Q 002973 153 AYEGWEDPTCELRGHFVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPY 232 (861)
Q Consensus 153 ~ygGWE~~d~~l~Gh~~Gh~LsAlA~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~~~~~~~l~~~W~py 232 (861)
+-|.|..-++-+ |--.--|-|-+-.+|...+|+.+.+|.+.--|.|.+ |++--|- |-. -.+|-|-
T Consensus 235 hsgdw~rkdsgi-gagidsyyey~lkayillgddsfldrfn~hydai~r--------yi~k~pi--~ld----vhihkp~ 299 (587)
T KOG2430|consen 235 HSGDWTRKDSGI-GAGIDSYYEYLLKAYILLGDDSFLDRFNKHYDAIKR--------YINKGPI--FLD----VHIHKPM 299 (587)
T ss_pred ccCcceecccCc-CcchHHHHHHHHHHhheeccHHHHHHHHHHHHHHHH--------HhcCCCe--EEE----Eecccch
Confidence 456798777665 444556777788888899999999999888777754 3332221 100 0233344
Q ss_pred chhHHHHHHHHHHHH----HcCC-hhHHHHHHHHHHHHHHHhhh---cccccc--cccccc--cccccccchHHHHHHHH
Q 002973 233 YTIHKILAGLLDQYT----FADN-TQALKMTKWMVEYFYNRVQN---VITKYS--VERHWN--SLNEETGGMNDVLYRLY 300 (861)
Q Consensus 233 Yt~HkI~aGLld~y~----~tG~-~~aL~va~~~ad~~~~r~~~---~~~~~~--~~~~~~--~l~~E~GGmne~L~~LY 300 (861)
-+..-.|.+|++.+- +.|+ ..|.+ |-.-+....++ +++..+ -+-||. ++.+| ..|+-+-||
T Consensus 300 l~ar~~mdallaf~pglqvlkgdik~aie----~heml~qvikkh~flpeaft~df~vhwaehpirpe---faestyfly 372 (587)
T KOG2430|consen 300 LAARGFMDALLAFFPGLQVLKGDIKEAIE----MHEMLFQVIKKHKFLPEAFTHDFQVHWAEHPIRPE---FAESTYFLY 372 (587)
T ss_pred hhHhhHHHHHHHhCcchhhhccccHHHHH----HHHHHHHHHHHcccChHhhcccceeecccCCCChh---hhhhheeee
Confidence 333334555554321 2343 22333 33333322221 111111 123553 56677 468899999
Q ss_pred HHcCCHHHHHHhhhccc
Q 002973 301 TITQDPKHLLLAHLFDK 317 (861)
Q Consensus 301 ~~TGd~ryL~lA~~F~~ 317 (861)
..|||+-||+.|+.+.+
T Consensus 373 kat~dp~yl~v~k~iid 389 (587)
T KOG2430|consen 373 KATGDPHYLEVAKQIID 389 (587)
T ss_pred cccCCchHHHHHHHHHH
Confidence 99999999999998743
No 63
>PLN02171 endoglucanase
Probab=58.28 E-value=1.3e+02 Score=37.03 Aligned_cols=61 Identities=15% Similarity=0.093 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhccccccc-cccccc---ccccccchHHHHHHHHHHcCCHHHHHHhhhc
Q 002973 252 TQALKMTKWMVEYFYNRVQNVITKYSV-ERHWNS---LNEETGGMNDVLYRLYTITQDPKHLLLAHLF 315 (861)
Q Consensus 252 ~~aL~va~~~ad~~~~r~~~~~~~~~~-~~~~~~---l~~E~GGmne~L~~LY~~TGd~ryL~lA~~F 315 (861)
++.|+-|+++-+|..+.=+..-...+. ...... ...| +..+-+|||+.|||++||+.+...
T Consensus 201 ~~lL~~Ak~ly~fA~~~~g~y~~~~~~~~~~Y~s~s~y~DE---l~WAAawLy~ATgd~~Yl~~~~~~ 265 (629)
T PLN02171 201 NELLTHAKQLFDFADKYRGKYDSSITVAQKYYRSVSGYGDE---LLWAAAWLYQATNNQYYLDYLGNN 265 (629)
T ss_pred HHHHHHHHHHHHHHHhCCCcccCCCcccCCccCCCCCccHH---HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 467888888888886531110000000 001110 1123 456888999999999999987654
No 64
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=51.90 E-value=1e+02 Score=34.41 Aligned_cols=89 Identities=16% Similarity=0.098 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcCCCccccCCcchhhhhhccCCcccccc---hhHHHHHHHHHHHH
Q 002973 171 HYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYY---TIHKILAGLLDQYT 247 (861)
Q Consensus 171 h~LsAlA~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~~~~~~~l~~~W~pyY---t~HkI~aGLld~y~ 247 (861)
-=|.=||.+|..++|+..++.+.+-|+.|++.|- ++|=...|... ...-..+-+|. ++| +|.-|.+.+.
T Consensus 48 ~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQy--pnGGWPQf~p~-----~~~Y~~~ITfND~am~~-vl~lL~~i~~ 119 (290)
T TIGR02474 48 TEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQY--PNGGWPQFYPL-----KGGYSDAITYNDNAMVN-VLTLLDDIAN 119 (290)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhC--CCCCcCcccCC-----cCCcccccccCcHHHHH-HHHHHHHHHh
Confidence 3455589999999999999999999999999998 66533333210 00000111111 122 3333445554
Q ss_pred HcC---------ChhHHHHHHHHHHHHHH
Q 002973 248 FAD---------NTQALKMTKWMVEYFYN 267 (861)
Q Consensus 248 ~tG---------~~~aL~va~~~ad~~~~ 267 (861)
.-+ .+++...+.|-.+||.+
T Consensus 120 ~~~~~~~~~~~~~~r~~~Ai~Rgid~ILk 148 (290)
T TIGR02474 120 GKDPFDVFPDSTRTRAKTAVTKGIECILK 148 (290)
T ss_pred ccCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 332 25788888999999975
No 65
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=51.19 E-value=61 Score=38.87 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=30.0
Q ss_pred chhHHHHHHHhcCCcHHHHHHHHHHHHhhccceeeecCCCC
Q 002973 342 VVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSA 382 (861)
Q Consensus 342 ~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~yvTGG~g~ 382 (861)
++++..-+||+|||+.|++.+-...+.+. ++--+.+|.+.
T Consensus 532 viEs~fYlwRlT~d~kyR~wgweavqale-k~cr~~~G~~g 571 (625)
T KOG2204|consen 532 VIESYFYLWRLTGDQKYRSWGWEAVQALE-KYCRVAKGYSG 571 (625)
T ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHHHH-Hhcccccchhh
Confidence 56788889999999999998766666665 35556666654
No 66
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=50.31 E-value=19 Score=33.01 Aligned_cols=77 Identities=16% Similarity=0.084 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcCCCccccCCcchhhhhhccCCcccccchhHHHHHHHHHHHHHcCCh
Q 002973 173 LSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNT 252 (861)
Q Consensus 173 LsAlA~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~~~~~~~l~~~W~pyYt~HkI~aGLld~y~~tG~~ 252 (861)
..+++.++...+++...+.+++.++.|.++|. +||-.+..+.+. .+++-+-+ ....+++..
T Consensus 29 t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~--~dG~w~~~~~~~------------~~~t~~~~-----~~l~~~~~~ 89 (109)
T PF13243_consen 29 TAALILALAAAGDAAVDEAIKKAIDWLLSHQN--PDGGWGYSGGEY------------VSMTAAAI-----AALALAGVY 89 (109)
T ss_dssp ------------TS-SSBSSHHHHHHHHH-----TTS--S-TS--H------------HHHHHHHH-----HHHHHHHTT
T ss_pred cccccccccccCCCCcHHHHHHHHHHHHHhcC--CCCCCCCcCCCC------------HHHHHHHH-----HHHHHhCCC
Confidence 33455566667888999999999999999999 888655332110 12222221 222222332
Q ss_pred hHHHHHHHHHHHHHHH
Q 002973 253 QALKMTKWMVEYFYNR 268 (861)
Q Consensus 253 ~aL~va~~~ad~~~~r 268 (861)
.-.+.+.|..+||.+.
T Consensus 90 ~~~~~~~r~~~wi~~~ 105 (109)
T PF13243_consen 90 PDDEAVERGLEWILSH 105 (109)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc
Confidence 2445688889999764
No 67
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=44.11 E-value=1.9e+02 Score=32.77 Aligned_cols=181 Identities=20% Similarity=0.206 Sum_probs=89.0
Q ss_pred HhcCChhHHHHHHHHHHHHHHHHhhcCCCccccCC---cchhhhhhcc-CCcccccchhHHHHHHHHHHHHHcCChhHHH
Q 002973 181 ASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFP---SEQFDRFEAL-KPVWAPYYTIHKILAGLLDQYTFADNTQALK 256 (861)
Q Consensus 181 a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~---~~~~~~~~~l-~~~W~pyYt~HkI~aGLld~y~~tG~~~aL~ 256 (861)
..|+++.++++++..+|.|-+-.+. ..-..|+.- +.-|.|-++. ...--.|| .-++.+|.+-|++..|+
T Consensus 199 ~~tg~~ifee~arkaldflwekr~r-ss~l~g~~inihsgdw~rkdsgigagidsyy------ey~lkayillgddsfld 271 (587)
T KOG2430|consen 199 RFTGAPIFEEKARKALDFLWEKRHR-SSDLMGTTINIHSGDWTRKDSGIGAGIDSYY------EYLLKAYILLGDDSFLD 271 (587)
T ss_pred hccCChhhHHHHHHHHHHHHHHhcc-cccccceeEEeccCcceecccCcCcchHHHH------HHHHHHhheeccHHHHH
Confidence 4699999999999999998765542 222333221 1112221111 11112355 23567788889999998
Q ss_pred HHHHHHHHHHHHhhhcccccccccccccccccccchHHHHHH----HHHHcCCH-HHHHHhhhc----ccccccchhccc
Q 002973 257 MTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYR----LYTITQDP-KHLLLAHLF----DKPCFLGLLAVQ 327 (861)
Q Consensus 257 va~~~ad~~~~r~~~~~~~~~~~~~~~~l~~E~GGmne~L~~----LY~~TGd~-ryL~lA~~F----~~~~~~~~l~~~ 327 (861)
-.-+.-|-+.+...+.+--+...-|--+++ .+|=|. +|.- |--+-||- .-+++-+.+ .+..|+ |.+..
T Consensus 272 rfn~hydai~ryi~k~pi~ldvhihkp~l~-ar~~md-allaf~pglqvlkgdik~aie~heml~qvikkh~fl-peaft 348 (587)
T KOG2430|consen 272 RFNKHYDAIKRYINKGPIFLDVHIHKPMLA-ARGFMD-ALLAFFPGLQVLKGDIKEAIEMHEMLFQVIKKHKFL-PEAFT 348 (587)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEecccchhh-HhhHHH-HHHHhCcchhhhccccHHHHHHHHHHHHHHHHcccC-hHhhc
Confidence 888877777654432100011111111111 122122 2211 11223442 222222211 112221 22211
Q ss_pred CCCCCCCcccCCccch----hHHHHHHHhcCCcHHHHHHHHHHHHhhccce
Q 002973 328 ADDISGFHANTHIPVV----IGSQMRYEVTGDPLYKVTGTFFMDIVNASHG 374 (861)
Q Consensus 328 ~D~l~g~HanthiP~~----~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~ 374 (861)
.|. ..|.-. -|+. ..---+|+.|||+.|++.++..+++++++--
T Consensus 349 ~df--~vhwae-hpirpefaestyflykat~dp~yl~v~k~iidninkyak 396 (587)
T KOG2430|consen 349 HDF--QVHWAE-HPIRPEFAESTYFLYKATGDPHYLEVAKQIIDNINKYAK 396 (587)
T ss_pred ccc--eeeccc-CCCChhhhhhheeeecccCCchHHHHHHHHHHHHhhhee
Confidence 111 123222 2332 3344569999999999999999999986543
No 68
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=36.09 E-value=2e+02 Score=34.14 Aligned_cols=123 Identities=15% Similarity=0.144 Sum_probs=64.5
Q ss_pred hcCChhHHHHHHHHHHHHHHHHhhcCCCccccCCcchhhhhhccCCcccccchhHHHHHHHHHHHHHcCChhHH----HH
Q 002973 182 STHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNTQAL----KM 257 (861)
Q Consensus 182 ~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~~~~~~~l~~~W~pyYt~HkI~aGLld~y~~tG~~~aL----~v 257 (861)
..+|.++ ++..++.+...|. ++|.+........ ....--|-|..+-|+ .+-++|+.+||.+.+ ..
T Consensus 164 ~~~~~~l---~~~~l~~~~~~q~--~~G~~p~~~P~~~-----~~~~~~~~w~l~~i~-~~~~~y~~tGD~~~l~~~~~~ 232 (509)
T PF05592_consen 164 SFGDAAL---YRKWLRDFADSQR--PDGLLPSVAPSYG-----GGGFGIPDWSLAWII-IPWDYYLYTGDREFLEEYYPA 232 (509)
T ss_dssp CT--HHH---HHHHHHHHHGGTT--TSTT-SSBSS--------SSGGGBHHHHHHHHH-HHHHHHHHHT-HHHHHHHHHH
T ss_pred hCCcHHH---HHHHHHHHHHhhc--ccCCceEEecccC-----CCCCCCccHHHHHHH-HHHHHHHHhCCHHHHHHHHHH
Confidence 4455554 6667778888999 8998765322111 011122344454455 456999999998644 46
Q ss_pred HHHHHHHHHHHhhhc---ccccccccccc----ccccccc----------chHHHHHHHHHHcCCH----HHHHHhhhcc
Q 002973 258 TKWMVEYFYNRVQNV---ITKYSVERHWN----SLNEETG----------GMNDVLYRLYTITQDP----KHLLLAHLFD 316 (861)
Q Consensus 258 a~~~ad~~~~r~~~~---~~~~~~~~~~~----~l~~E~G----------Gmne~L~~LY~~TGd~----ryL~lA~~F~ 316 (861)
++++.+|+.+...+. +.....-. |. ......+ .....+++|.+..|++ +|.++|+.+.
T Consensus 233 ~~~~l~~~~~~~~~~~~~~~~~~~~D-W~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~lA~~lg~~~~a~~y~~~a~~lk 311 (509)
T PF05592_consen 233 MKRYLDYLERRVDDGLDGLPGWGFGD-WLAPGNDGDGPTPGATITNALYYYALRAAAELAEALGKDEDAAEYRARAERLK 311 (509)
T ss_dssp HHHHHHHHHTTB-TSSB-CCSB--S--SS----TT---SCCEEHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCccccCCCCCceee-cCCccCcccccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 777778887655441 11110001 21 0111111 1235678899999985 7888888763
No 69
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=34.79 E-value=3.6e+02 Score=33.45 Aligned_cols=107 Identities=17% Similarity=0.146 Sum_probs=62.4
Q ss_pred CCCCCcCCC-------cCccccchhHHHHHHHHHHHhcCC----hhHHHHHHHHHHHHHHHHhhcCCCccccCCcchhhh
Q 002973 153 AYEGWEDPT-------CELRGHFVGHYLSASAHMWASTHN----VTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDR 221 (861)
Q Consensus 153 ~ygGWE~~d-------~~l~Gh~~Gh~LsAlA~~~a~t~D----~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~~~~ 221 (861)
..|||-+.+ +|- ++.-|+|+..+- ..+. +.-.+++.+-|+.|..+|. .||=.++|....-.+
T Consensus 357 ~~GGW~f~~~~~~~pdsD~----Ta~~L~Al~~~~-~~~~~~~~~~~~~~l~~av~~Ll~~Qn--~dGGw~~y~~~~~~~ 429 (634)
T TIGR03463 357 AKGGWCFSDGDHGWPVSDC----TAEALSASLVLE-PLGLNPEERVPQARLQDAVEFILSRQN--EDGGFGTYERQRGPR 429 (634)
T ss_pred CCCccccccCCCCCCcccc----HHHHHHHHHHHh-hcCCcccccccHHHHHHHHHHHHHhcC--CCCCEeccCCCCcHH
Confidence 457887653 333 577788876542 2221 1345789999999999999 788777775321111
Q ss_pred h----------hc-cCCcccccchhHHHHHHHHHHHHH-cC---ChhHHHHHHHHHHHHHHH
Q 002973 222 F----------EA-LKPVWAPYYTIHKILAGLLDQYTF-AD---NTQALKMTKWMVEYFYNR 268 (861)
Q Consensus 222 ~----------~~-l~~~W~pyYt~HkI~aGLld~y~~-tG---~~~aL~va~~~ad~~~~r 268 (861)
| ++ ..+.=-+.+|.|-|.+ | ..+.. .. .++..+.+.+.++|+.+.
T Consensus 430 ~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~a-L-~~~~~~~~~~~~~~i~~ai~rav~~L~~~ 489 (634)
T TIGR03463 430 VLELLNPSEMFSTCMTDVSYVECTSSCLQA-L-AAWRKHHPHVPDGRITRAISRGVRFLRSR 489 (634)
T ss_pred HHhcCChHHhhcccccCCCcCcHHHHHHHH-H-HHHhhcCcchhhhHHHHHHHHHHHHHHHh
Confidence 1 11 1123346788886653 4 33332 21 133445678888998754
No 70
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=33.38 E-value=53 Score=29.97 Aligned_cols=60 Identities=17% Similarity=0.168 Sum_probs=35.3
Q ss_pred HHHH--HHHHHHHHhhcCCCccccCCcchhhhhhccCCcccccchhHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 002973 192 MTAV--VSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNTQALKMTKWMVEYFYN 267 (861)
Q Consensus 192 ~d~~--Vd~L~~~Q~~~~dGYL~a~~~~~~~~~~~l~~~W~pyYt~HkI~aGLld~y~~tG~~~aL~va~~~ad~~~~ 267 (861)
.+++ ++.|.++|. +||-++..+... ..+. ++ ...+| ......|.+...+.+.+..+|+.+
T Consensus 42 ~~~~~~~~~L~~~q~--~dGg~~~~~~~~------~~~~---~~----t~~~l-~~l~~~~~~~~~~~~~~a~~~l~~ 103 (113)
T PF13249_consen 42 RDRAAAVEWLLSQQN--PDGGWGSNPDGG------PPDV---YT----TYVAL-AALELLGRPDDEEAVRKAVDWLLS 103 (113)
T ss_dssp HHHHHHHHHHHHHB---TTSGBBSSTTTT-------BSH---HH----HHHHH-HHHHHHT-GGCHTTHCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCC--CCCCccCCCCCC------CccH---HH----HHHHH-HHHHHcCCCcccHHHHHHHHHHHH
Confidence 5555 999999999 898887765210 0111 11 22233 233455655556788889999975
No 71
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=33.11 E-value=1.9e+02 Score=32.37 Aligned_cols=91 Identities=14% Similarity=0.155 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcCC-CccccCCcc--hhhhhhccCCcccccchhHHHHHHHHHHH
Q 002973 170 GHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGS-GYLSAFPSE--QFDRFEALKPVWAPYYTIHKILAGLLDQY 246 (861)
Q Consensus 170 Gh~LsAlA~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~d-GYL~a~~~~--~~~~~~~l~~~W~pyYt~HkI~aGLld~y 246 (861)
-.=|.-||.+|..|+|+++++-+.+-|+.|+++|- ++ ||=.-||.. ..+..+ .++. + +.+ +|.=|.+.+
T Consensus 42 ~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQy--pnGGWPQ~yP~~~~Y~~~IT-fNDd-a---m~~-vl~lL~~v~ 113 (289)
T PF09492_consen 42 TTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQY--PNGGWPQFYPLRGGYHDHIT-FNDD-A---MVN-VLELLRDVA 113 (289)
T ss_dssp HHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS---TTS--BSECS--SGGGGSEE--GGG-H---HHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhC--CCCCCCccCCCCCCCCCceE-EccH-H---HHH-HHHHHHHHH
Confidence 34466699999999999999999999999999998 44 444444421 000000 0111 0 111 233344666
Q ss_pred HHcCCh---------hHHHHHHHHHHHHHHH
Q 002973 247 TFADNT---------QALKMTKWMVEYFYNR 268 (861)
Q Consensus 247 ~~tG~~---------~aL~va~~~ad~~~~r 268 (861)
...++- ++.+.+.|-.|+|.+.
T Consensus 114 ~~~~~~~~v~~~~~~r~~~A~~kgi~ciL~t 144 (289)
T PF09492_consen 114 EGKGDFAFVDESLRARARAAVDKGIDCILKT 144 (289)
T ss_dssp CT-TTSTTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 666666 8999999999999864
No 72
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=33.05 E-value=81 Score=29.73 Aligned_cols=36 Identities=25% Similarity=0.255 Sum_probs=27.3
Q ss_pred CcEEEECCeeccCCCCCCEEEEEeeeCCCCEEEEEecceeEEEec
Q 002973 567 GAKATLNGQSLSLPAPGNFISVTQRWSSTDKLTIQLPINLRTEAI 611 (861)
Q Consensus 567 ~~~v~VNG~~v~~~~~ggY~~I~R~Wk~GD~V~L~LPm~lr~~~~ 611 (861)
+=.|.|||+.++... .-+.||+|+|.|.-......+
T Consensus 33 ~GrV~vNG~~aKpS~---------~VK~GD~l~i~~~~~~~~v~V 68 (100)
T COG1188 33 GGRVKVNGQRAKPSK---------EVKVGDILTIRFGNKEFTVKV 68 (100)
T ss_pred CCeEEECCEEccccc---------ccCCCCEEEEEeCCcEEEEEE
Confidence 458999999886422 237899999999887777654
No 73
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=31.51 E-value=1.5e+02 Score=36.45 Aligned_cols=80 Identities=13% Similarity=0.157 Sum_probs=48.2
Q ss_pred CChhHHHHHHHHHHHHHHHHhhcCCCccccCCcchh----hh------hhcc-CCcccccchhHHHHHHHHHHHHHcCCh
Q 002973 184 HNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQF----DR------FEAL-KPVWAPYYTIHKILAGLLDQYTFADNT 252 (861)
Q Consensus 184 ~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~~----~~------~~~l-~~~W~pyYt~HkI~aGLld~y~~tG~~ 252 (861)
+++..+++++..|+.|.++|. .||-.++|....- +. +.+. .+.-.+-+|.|-|+ +|. .+.. ..+
T Consensus 382 ~~~~~~~~l~~a~~~Ll~~Qn--~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~-aL~-~~~~-r~~ 456 (621)
T TIGR01787 382 DEHVKRDRLRDAVNWILGMQS--SNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQ-ALG-AFGH-RAD 456 (621)
T ss_pred cccccHHHHHHHHHHHHHHcC--CCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHH-HHH-HhcC-ccH
Confidence 456777889999999999999 8998888753110 11 1111 11111336777555 343 2221 113
Q ss_pred hHHHHHHHHHHHHHHH
Q 002973 253 QALKMTKWMVEYFYNR 268 (861)
Q Consensus 253 ~aL~va~~~ad~~~~r 268 (861)
...+.+.+..+|+.+.
T Consensus 457 ~~~~~i~rAl~~L~~~ 472 (621)
T TIGR01787 457 EIRNVLERALEYLRRE 472 (621)
T ss_pred hHHHHHHHHHHHHHHh
Confidence 4557889999999754
No 74
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=30.32 E-value=3.7e+02 Score=29.80 Aligned_cols=97 Identities=14% Similarity=0.052 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHHhc--CChhHHHHHHHHHHHHHHHHhhcCCCccccCCcchhhhhh--------cc-CCcccccchhHH
Q 002973 169 VGHYLSASAHMWAST--HNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFE--------AL-KPVWAPYYTIHK 237 (861)
Q Consensus 169 ~Gh~LsAlA~~~a~t--~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~~~~~~--------~l-~~~W~pyYt~Hk 237 (861)
++--+.|++.+.... ++....+.++..++.|.++|. +||.+..+....-..|. +. .+.-.+..|.|-
T Consensus 94 Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~--~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~ 171 (348)
T cd02889 94 TAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQN--SNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECTGSV 171 (348)
T ss_pred hHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHhcc--CCCCEeeecCCccHHHHhcCchhhcCCccCCCCcchHHHH
Confidence 455566665544443 246778899999999999999 88887765331111110 00 011124556664
Q ss_pred HHHHHHHHHHHcCC--hhHHHHHHHHHHHHHHH
Q 002973 238 ILAGLLDQYTFADN--TQALKMTKWMVEYFYNR 268 (861)
Q Consensus 238 I~aGLld~y~~tG~--~~aL~va~~~ad~~~~r 268 (861)
|+ +|+..-....+ ++..+.+.+..+|+.+.
T Consensus 172 l~-aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~ 203 (348)
T cd02889 172 LE-ALGLFGKLYPEHRREIDPAIRRAVKYLERE 203 (348)
T ss_pred HH-HHHHhhhcCCchHHHHHHHHHHHHHHHHHh
Confidence 43 44322221111 12345778888888653
No 75
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=29.98 E-value=3.7e+02 Score=23.39 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=18.1
Q ss_pred eeeEEEEeecCCccCCCcEEEECCeeccCC
Q 002973 551 QSSSLNLRIPLWTNSNGAKATLNGQSLSLP 580 (861)
Q Consensus 551 ~~ftL~LRIP~Wa~~~~~~v~VNG~~v~~~ 580 (861)
.++.|.+--|+ +.+|++||+++...
T Consensus 38 ~~~~i~iGna~-----~v~v~~nG~~~~~~ 62 (77)
T PF13464_consen 38 EPFRIRIGNAG-----AVEVTVNGKPVDLL 62 (77)
T ss_pred CCEEEEEeCCC-----cEEEEECCEECCCC
Confidence 45666665554 68999999998863
No 76
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=29.80 E-value=3e+02 Score=24.74 Aligned_cols=21 Identities=19% Similarity=0.528 Sum_probs=17.1
Q ss_pred eEEEEeecCCccCCCcEEEECCeecc
Q 002973 553 SSLNLRIPLWTNSNGAKATLNGQSLS 578 (861)
Q Consensus 553 ftL~LRIP~Wa~~~~~~v~VNG~~v~ 578 (861)
.+|.|.+|+ +++|+|||++..
T Consensus 3 a~itv~vPa-----dAkl~v~G~~t~ 23 (75)
T TIGR03000 3 ATITVTLPA-----DAKLKVDGKETN 23 (75)
T ss_pred eEEEEEeCC-----CCEEEECCeEcc
Confidence 478888892 689999999866
No 77
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=26.46 E-value=2.3e+02 Score=35.03 Aligned_cols=104 Identities=14% Similarity=0.112 Sum_probs=60.2
Q ss_pred CCCCCcCC-------CcCccccchhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcCCCccccCCcch-hhhhhc
Q 002973 153 AYEGWEDP-------TCELRGHFVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQ-FDRFEA 224 (861)
Q Consensus 153 ~ygGWE~~-------d~~l~Gh~~Gh~LsAlA~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~-~~~~~~ 224 (861)
..|||-|. |+| -+..-|.|+..+ ....++...+.+++-|+.|...|. .||..++|.... ..-++.
T Consensus 364 ~~GGW~f~~~~~~~pd~d----dTa~~L~AL~~~-~~~~~~~~~~~i~ra~~wLl~~Qn--~dGgw~af~~~~~~~~l~~ 436 (635)
T TIGR01507 364 EPGGWAFQFDNVYYPDVD----DTAVVVWALNGL-RLPDERRRRDAMTKAFRWIAGMQS--SNGGWGAFDVDNTSDLLNH 436 (635)
T ss_pred CCCccCCCCCCCCCCCch----hHHHHHHHHHHc-CCCccccchHHHHHHHHHHHHhcC--CCCCEecccCCcchhHHhc
Confidence 35788764 222 155667777653 222455677899999999999999 999998874210 000111
Q ss_pred --------cCCcccccchhHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 002973 225 --------LKPVWAPYYTIHKILAGLLDQYTFADNTQALKMTKWMVEYFYNR 268 (861)
Q Consensus 225 --------l~~~W~pyYt~HkI~aGLld~y~~tG~~~aL~va~~~ad~~~~r 268 (861)
.-+.-.+-+|.|-+++ +...|.+..-+.+.+..+|+.+.
T Consensus 437 ~~f~d~~~~~D~~~~d~Ta~~l~a-----l~~~g~~~~~~~i~rav~~L~~~ 483 (635)
T TIGR01507 437 IPFCDFGAVTDPPTADVTARVLEC-----LGSFGYDDAWPVIERAVEYLKRE 483 (635)
T ss_pred CCccccccccCCCCccHHHHHHHH-----HHHhCCCchhHHHHHHHHHHHHc
Confidence 1111112245654443 22334443356788888998753
No 78
>PHA02651 IL-1 receptor antagonist; Provisional
Probab=24.81 E-value=45 Score=34.08 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=20.7
Q ss_pred ceEEEeccCCCCeeEEeccccCCCceEEEE
Q 002973 772 ETISLEAVNQNGCFVYSGVNFNSGASLKLS 801 (861)
Q Consensus 772 g~vsle~~~~pg~~~~~~~~~~~g~~~~~~ 801 (861)
.+.+|||+..||||+.... -.....|.+-
T Consensus 115 ~tstFESaafPgWfIsTs~-~e~~~PV~Lt 143 (165)
T PHA02651 115 HTSTFESVAFPGWFLCTSS-GDGIEPVGLT 143 (165)
T ss_pred CceEEEecCCCCcEEEecc-ccCCcceEee
Confidence 4999999999999998532 0112467766
No 79
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=24.10 E-value=1.5e+02 Score=27.44 Aligned_cols=52 Identities=13% Similarity=0.385 Sum_probs=31.6
Q ss_pred EEEECCeeccCCCCCCEEEEEeeeCCCCEEEEEec-ceeEEE-----ecCCCccccCCeEEEeecceeeee
Q 002973 569 KATLNGQSLSLPAPGNFISVTQRWSSTDKLTIQLP-INLRTE-----AIKDDRPAYASIQAILYGPYLLAG 633 (861)
Q Consensus 569 ~v~VNG~~v~~~~~ggY~~I~R~Wk~GD~V~L~LP-m~lr~~-----~~~d~~~~~~~~vAv~rGPlVlA~ 633 (861)
.++|||+... ..++..+.++ +||.|+|+-. -..|+. +++. --+.|||+|+.-
T Consensus 30 ~~~v~~~~~~-~~~~~~~~l~----~g~~i~~~a~~~~a~~lll~GePl~E--------pi~~~GpFVmnt 87 (104)
T PF05726_consen 30 SVEVGGEEDP-LEAGQLVVLE----DGDEIELTAGEEGARFLLLGGEPLNE--------PIVQYGPFVMNT 87 (104)
T ss_dssp EEEETTTTEE-EETTEEEEE-----SECEEEEEESSSSEEEEEEEE----S----------EEETTEEESS
T ss_pred cEEECCCcce-ECCCcEEEEC----CCceEEEEECCCCcEEEEEEccCCCC--------CEEEECCcccCC
Confidence 3566666411 1245577766 8899999998 777774 3322 247899999863
No 80
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=23.77 E-value=53 Score=36.56 Aligned_cols=51 Identities=22% Similarity=0.342 Sum_probs=36.0
Q ss_pred hhHHHHHHHHhhhcccCCchHHHHHHHHHhhhhcccccCCCCCeEEEeccCCCC
Q 002973 405 TTYNMLKVSRHLFRWTKEMVYADYYERALTNGVLSIQRGTEPGVMIYMLPLGRG 458 (861)
Q Consensus 405 as~nmlkl~~~Lf~~tgD~~YaD~~ERaLyN~iLa~q~~~d~g~~~Y~~PL~~g 458 (861)
+|+.-|.+.-++++.++|.+|-+-.+|.+ +-||.+|.| .||...| -|+..+
T Consensus 40 aT~~ei~fLa~~y~~t~d~~y~~A~~kgl-~ylL~aQyp-nGGWPQ~-yP~~~~ 90 (289)
T PF09492_consen 40 ATTTEIRFLARVYQATKDPRYREAFLKGL-DYLLKAQYP-NGGWPQF-YPLRGG 90 (289)
T ss_dssp TTHHHHHHHHHHHHHCG-HHHHHHHHHHH-HHHHHHS-T-TS--BSE-CS--SG
T ss_pred hHHHHHHHHHHHHHHhCChHHHHHHHHHH-HHHHHhhCC-CCCCCcc-CCCCCC
Confidence 45666677777999999999999999998 999999997 6665554 366443
No 81
>PLN00119 endoglucanase
Probab=23.44 E-value=1.9e+02 Score=34.77 Aligned_cols=63 Identities=19% Similarity=0.216 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhhccceeeecCCCCCCCCCCCcccccCCCcCcccchhhHHHHHHHHhhhcccCCchHHHHHHHH
Q 002973 357 LYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERA 432 (861)
Q Consensus 357 ~y~~aa~~fwd~V~~~h~yvTGG~g~~E~f~~p~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgD~~YaD~~ERa 432 (861)
+++++|+..|+...+++..-....... ...|+++.-.=+++.-+-.||+.|||.+|.++++..
T Consensus 203 ~lL~~Ak~~y~fA~~~~g~y~~~~~~~-------------~g~Y~ss~~~DEl~WAAawLY~aTgd~~Yl~~~~~~ 265 (489)
T PLN00119 203 ILIGHAKDLFEFAKAHPGLYQNSIPNA-------------GGFYASSGYEDELLWAAAWLHRATNDQTYLDYLTQA 265 (489)
T ss_pred HHHHHHHHHHHHHHhCCCcccCCCCCC-------------CCCCCCCchhhHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 458999999999887653211111101 122444444457777888999999999999987743
No 82
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=22.95 E-value=6.3e+02 Score=31.01 Aligned_cols=129 Identities=14% Similarity=0.169 Sum_probs=0.0
Q ss_pred CCcCCCcCccccchhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcCCCccccCCcchhhhhhccCCcccccc--
Q 002973 156 GWEDPTCELRGHFVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYY-- 233 (861)
Q Consensus 156 GWE~~d~~l~Gh~~Gh~LsAlA~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~~~~~~~l~~~W~pyY-- 233 (861)
+|....+. .++++...|++ +.++++++.|.+.|. +||+ +...+. ..+...|.-
T Consensus 295 ~W~RD~~~------------~a~Al~~~G~~---~~a~~~l~~l~~~q~--~~G~-------~~~~~~-~dG~~~~~~~~ 349 (616)
T TIGR01577 295 CWGRDASY------------IATALDRAGYH---DRVDRFFRWAMQTQS--RDGS-------WQQRYY-LNGRLAPLQWG 349 (616)
T ss_pred eccccHHH------------HHHHHHHCCCH---HHHHHHHHHHHHhhC--cCCC-------cceEEe-cCCCCCCCCCC
Q ss_pred -----hhHHHHHHHHHHHHHcCCh----hHHHHHHHHHHHHHHHhhhcccccccccccccccccccch-----------H
Q 002973 234 -----TIHKILAGLLDQYTFADNT----QALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGM-----------N 293 (861)
Q Consensus 234 -----t~HkI~aGLld~y~~tG~~----~aL~va~~~ad~~~~r~~~~~~~~~~~~~~~~l~~E~GGm-----------n 293 (861)
++.-|. ++..+++.+|+. +..+.+++.++|+.+...+. -..+....| +|.+|. .
T Consensus 350 ~Q~D~~g~~l~-al~~y~~~t~d~~~~~~~~~~v~~a~~fl~~~~~~~-l~~~~~~lW----Eer~G~~~~t~a~~~aAL 423 (616)
T TIGR01577 350 LQIDETGSILW-AMDQHYRLTNDRAFLEEIWESVQKAAQYLILFIDPE-TPLPCRDLW----EEREGVFTYTASAVYGGL 423 (616)
T ss_pred ccccchhHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhccCC-CCCCCCccc----eecCCccCccHHHHHHHH
Q ss_pred HHHHHHHHHcCCH----HHHHHhhhc
Q 002973 294 DVLYRLYTITQDP----KHLLLAHLF 315 (861)
Q Consensus 294 e~L~~LY~~TGd~----ryL~lA~~F 315 (861)
...++|.+..|++ +|.+.|+.+
T Consensus 424 ~~aa~lA~~lGd~~~a~~~~~~Ad~i 449 (616)
T TIGR01577 424 DAAAAVADKLGEKRLAQNWKKAAEFI 449 (616)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
No 83
>PRK13807 maltose phosphorylase; Provisional
Probab=22.80 E-value=3.5e+02 Score=34.35 Aligned_cols=145 Identities=16% Similarity=0.240 Sum_probs=76.4
Q ss_pred CeEeCCCCchHHHHHHHHhhhhccCc--chhhHhHHHhcCCCCCCCCCCCCcCCCcCccccchhHHHHHHHHHHHhcCCh
Q 002973 109 DVKLDPSSLHWRAQQTNLEYLLMLDV--DSLVWSFQKTAGSPTAGKAYEGWEDPTCELRGHFVGHYLSASAHMWASTHNV 186 (861)
Q Consensus 109 ~V~L~~~~~~~~~~~~~~~~ll~~d~--drlL~nFR~~AGl~~~g~~ygGWE~~d~~l~Gh~~Gh~LsAlA~~~a~t~D~ 186 (861)
+|++..+...-.+.+.++=+|+..-+ +.-+ +. -..||. |+.|.|-.|+|+++ || +=..+ ...+|
T Consensus 307 di~I~gd~~~q~alr~~~fhL~~s~~~~~~~~-~i-~a~GLs--ge~Y~Gh~FWDtE~-------f~--lP~~~-~~~~P 372 (756)
T PRK13807 307 DVVIEGDDAAQQGIRFNIFQLFSTYYGEDARL-NI-GPKGFT--GEKYGGATYWDTEA-------YC--VPFYL-ATADP 372 (756)
T ss_pred CeEEcCCHHHHHHHHHHHHHHHhccCCCCCCC-Cc-CCCCCC--cCCcCCeeeeccch-------hh--hhhhh-hccCH
Confidence 78886443333344444444443211 1100 11 122443 46788877777665 11 11111 22355
Q ss_pred hHHH-HHHHHHHHHHHHHhh-cCCCccccCCcchhhhhh--ccCCcccccch-hHH---HHHHHHHHHHHcCChhH----
Q 002973 187 TLKE-KMTAVVSALSECQNK-MGSGYLSAFPSEQFDRFE--ALKPVWAPYYT-IHK---ILAGLLDQYTFADNTQA---- 254 (861)
Q Consensus 187 ~L~~-k~d~~Vd~L~~~Q~~-~~dGYL~a~~~~~~~~~~--~l~~~W~pyYt-~Hk---I~aGLld~y~~tG~~~a---- 254 (861)
++.. .+.+=...|.++.++ ...||-|+.+. |+... +-...|.+-.. .|. |--++..||++|||...
T Consensus 373 e~Ar~lL~YR~~~L~~Ar~~A~~~g~~GA~yP--W~s~~G~E~~~~w~~~~~e~HI~adIaya~~~Y~~~TgD~~fl~~~ 450 (756)
T PRK13807 373 EVTRNLLKYRYNQLPGAKENAKKQGLKGALYP--MVTFNGIECHNEWEITFEEIHRNGAIAYAIYNYTNYTGDESYLKEE 450 (756)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHcCCCccccc--eEcCCCCcCCCCcCCCceeEechHHHHHHHHHHHHHhCCHHHHHhc
Confidence 5544 446667777666543 35689888653 22111 11233433222 221 34456688889999875
Q ss_pred -HHHHHHHHHHHHHHh
Q 002973 255 -LKMTKWMVEYFYNRV 269 (861)
Q Consensus 255 -L~va~~~ad~~~~r~ 269 (861)
++|+...|.++.++.
T Consensus 451 G~e~l~etArfw~s~~ 466 (756)
T PRK13807 451 GLEVLVEIARFWADRV 466 (756)
T ss_pred CHHHHHHHHHHHHHhe
Confidence 478999999999876
No 84
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=22.22 E-value=2.2e+02 Score=36.06 Aligned_cols=58 Identities=22% Similarity=0.429 Sum_probs=42.5
Q ss_pred eEEEEEEeCCCCCeeeEEEEeecCCccCCCcEEEECCeeccCC-CCCCEEEEEeeeCCCCEEEEEe
Q 002973 538 RMTHTFSSKQEASQSSSLNLRIPLWTNSNGAKATLNGQSLSLP-APGNFISVTQRWSSTDKLTIQL 602 (861)
Q Consensus 538 ~V~ltV~~~~~~~~~ftL~LRIP~Wa~~~~~~v~VNG~~v~~~-~~ggY~~I~R~Wk~GD~V~L~L 602 (861)
+++.+|+.. ...-.|.+-||-- + |.+++|||++++.. ..++|.-|.-. +...+|++++
T Consensus 773 ~i~~~i~~~---~~~~~l~~sipy~-~--GW~~~vdGk~~~~~~~~~~f~g~~l~-~G~h~i~~~y 831 (843)
T PF09586_consen 773 HISGTITAT---SKDGYLVLSIPYD-K--GWKAYVDGKKVEIEKVNGGFMGVPLP-KGEHQIELKY 831 (843)
T ss_pred EEEEEEEec---CCCcEEEEEeccC-C--CCEEEECCEEccHhhhcCeEEEEEEc-CCceEEEEEE
Confidence 677778762 2345788999964 3 89999999999874 47889999876 4445576665
No 85
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=21.47 E-value=5.4e+02 Score=31.94 Aligned_cols=77 Identities=12% Similarity=0.041 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcCCCcc-ccCCcchhhhhhccCCcccccchhHHHHHHHHHHHH
Q 002973 169 VGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYL-SAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYT 247 (861)
Q Consensus 169 ~Gh~LsAlA~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL-~a~~~~~~~~~~~l~~~W~pyYt~HkI~aGLld~y~ 247 (861)
+++-|+|++.. ..+.. ...+++-|+.|.+.|+ +||.. +.+.. +. .|-|.+ .+.+|.
T Consensus 454 Ta~~l~al~~~---g~~~~-~~~i~rav~~L~~~Q~--~dG~W~g~wg~---------~~---~Y~T~~-al~aL~---- 510 (635)
T TIGR01507 454 TARVLECLGSF---GYDDA-WPVIERAVEYLKREQE--PDGSWFGRWGV---------NY---LYGTGA-VLSALK---- 510 (635)
T ss_pred HHHHHHHHHHh---CCCch-hHHHHHHHHHHHHccC--CCCCCccCCCC---------cc---ccHHHH-HHHHHH----
Confidence 57778887762 12222 7788999999999999 88853 43210 11 233333 233442
Q ss_pred HcCChhHHHHHHHHHHHHHHH
Q 002973 248 FADNTQALKMTKWMVEYFYNR 268 (861)
Q Consensus 248 ~tG~~~aL~va~~~ad~~~~r 268 (861)
..|.+..-+.+.+..+|+.+.
T Consensus 511 ~~g~~~~~~~i~rAv~wL~~~ 531 (635)
T TIGR01507 511 AVGIDTREPYIQKALAWLESH 531 (635)
T ss_pred HcCCCcccHHHHHHHHHHHHh
Confidence 345444456788889998753
No 86
>TIGR03515 GldC gliding motility-associated protein GldC. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldC do not abolish the gliding phenotype but do impair it. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=21.31 E-value=1.9e+02 Score=27.48 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=33.7
Q ss_pred CCcccccchhHHHHHHHHHHHH-HcCChhHHHHHHHHHHHHHHHhh
Q 002973 226 KPVWAPYYTIHKILAGLLDQYT-FADNTQALKMTKWMVEYFYNRVQ 270 (861)
Q Consensus 226 ~~~W~pyYt~HkI~aGLld~y~-~tG~~~aL~va~~~ad~~~~r~~ 270 (861)
..+-+..-=.|-++.|+-|-|+ +||+++.-+-++.++|||..++.
T Consensus 60 MpVdEMK~Ff~qtl~~maDT~~rAT~d~kma~~m~dfcd~faekl~ 105 (108)
T TIGR03515 60 MPVDEMKRFFIETLGGMADTFLNATGDEKMAEDIKDLCDRLAQKLK 105 (108)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh
Confidence 3344433345778888887766 89999999999999999987653
No 87
>PHA02811 putative host range protein; Provisional
Probab=21.24 E-value=1.4e+02 Score=31.16 Aligned_cols=40 Identities=18% Similarity=0.315 Sum_probs=28.8
Q ss_pred eEEEEEEeCCCCCeeeEEEEeecCCcc--C-CCcEEEECCeeccCC
Q 002973 538 RMTHTFSSKQEASQSSSLNLRIPLWTN--S-NGAKATLNGQSLSLP 580 (861)
Q Consensus 538 ~V~ltV~~~~~~~~~ftL~LRIP~Wa~--~-~~~~v~VNG~~v~~~ 580 (861)
.+.|.++..| ...|-+-|| |.|.. . -..++++||.++...
T Consensus 32 ~I~Lk~~~~K--k~~~i~Il~-PdWseI~evKPI~m~~Ng~~vdv~ 74 (197)
T PHA02811 32 TINIKVNQQK--KLDFIIILR-PDWTEVRNVKKINMVCNGVVIDTT 74 (197)
T ss_pred EEEEEeCCcc--EEEEEEEec-cchhhhhhccceEEEECCcEeEEE
Confidence 6777776533 566778888 99943 1 157899999988764
No 88
>COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon [Transcription / Coenzyme metabolism]
Probab=20.20 E-value=1e+02 Score=32.45 Aligned_cols=47 Identities=26% Similarity=0.427 Sum_probs=34.7
Q ss_pred EEeecCCccCC-------CcEEEECCeeccCCCCCCEEEE-EeeeCCCCEEEEEecceeEEE
Q 002973 556 NLRIPLWTNSN-------GAKATLNGQSLSLPAPGNFISV-TQRWSSTDKLTIQLPINLRTE 609 (861)
Q Consensus 556 ~LRIP~Wa~~~-------~~~v~VNG~~v~~~~~ggY~~I-~R~Wk~GD~V~L~LPm~lr~~ 609 (861)
-+|||+|-..+ -+.++|||. .|.+.+ +|+-.+.|.|+|-=|+.+|-+
T Consensus 145 gi~Iegf~~~~RtfG~v~~yp~~Ingi-------~gaiV~P~rT~h~~dviEIIapv~LR~~ 199 (214)
T COG1339 145 GIRIEGFKTEDRTFGGVKAYPCKINGI-------EGAIVIPERTHHPTDVIEIIAPVKLRDE 199 (214)
T ss_pred CEeeCCCCCCCceeccEEEEEEEEcCc-------ceEEEeeccccCCcceEEEEccHhHHHH
Confidence 47899997542 266788983 235554 588888999999999998864
Done!