Query 002974
Match_columns 861
No_of_seqs 544 out of 2759
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 14:30:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002974.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002974hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4660 Protein Mei2, essentia 100.0 5.9E-49 1.3E-53 438.6 20.0 429 224-860 2-436 (549)
2 TIGR01628 PABP-1234 polyadenyl 100.0 6.9E-29 1.5E-33 290.3 19.8 291 192-487 4-328 (562)
3 KOG0148 Apoptosis-promoting RN 100.0 5.4E-29 1.2E-33 258.4 15.1 214 189-438 7-239 (321)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.2E-28 6.9E-33 267.3 21.9 159 276-438 2-172 (352)
5 TIGR01659 sex-lethal sex-letha 100.0 2.6E-27 5.7E-32 262.2 21.3 163 272-438 102-276 (346)
6 TIGR01628 PABP-1234 polyadenyl 100.0 2.5E-27 5.3E-32 277.2 20.8 203 279-487 2-221 (562)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 2.8E-26 6E-31 252.0 19.7 244 191-439 6-351 (352)
8 TIGR01645 half-pint poly-U bin 99.9 3.4E-25 7.4E-30 258.2 20.5 164 275-438 105-285 (612)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.2E-24 2.7E-29 250.7 20.6 161 276-437 1-174 (481)
10 TIGR01622 SF-CC1 splicing fact 99.9 7.4E-24 1.6E-28 241.3 20.1 163 273-436 85-265 (457)
11 KOG0117 Heterogeneous nuclear 99.9 1.1E-23 2.4E-28 230.8 17.8 197 275-487 81-297 (506)
12 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.8E-23 3.9E-28 241.1 20.6 165 272-438 170-376 (509)
13 TIGR01648 hnRNP-R-Q heterogene 99.9 1.6E-23 3.6E-28 243.7 19.3 193 275-481 56-269 (578)
14 TIGR01648 hnRNP-R-Q heterogene 99.9 1.6E-23 3.4E-28 243.9 18.7 235 191-439 61-309 (578)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 3.9E-23 8.5E-28 238.3 20.3 164 274-437 272-480 (481)
16 PF04059 RRM_2: RNA recognitio 99.9 3.6E-24 7.8E-29 196.4 6.1 49 812-860 1-50 (97)
17 KOG0144 RNA-binding protein CU 99.9 5.2E-23 1.1E-27 224.6 13.5 165 274-441 31-210 (510)
18 KOG0117 Heterogeneous nuclear 99.9 5.3E-22 1.1E-26 217.7 16.2 164 275-441 162-335 (506)
19 KOG0145 RNA-binding protein EL 99.9 1.1E-21 2.4E-26 202.9 16.5 161 274-438 38-210 (360)
20 KOG0123 Polyadenylate-binding 99.9 1.3E-21 2.8E-26 218.4 17.8 195 278-487 2-210 (369)
21 TIGR01642 U2AF_lg U2 snRNP aux 99.9 4E-21 8.7E-26 221.6 19.9 162 275-436 293-501 (509)
22 TIGR01622 SF-CC1 splicing fact 99.9 4.4E-21 9.4E-26 218.7 19.7 162 276-437 185-448 (457)
23 KOG0131 Splicing factor 3b, su 99.9 1.4E-21 3.1E-26 194.0 12.5 163 275-440 7-180 (203)
24 KOG0123 Polyadenylate-binding 99.9 3.3E-21 7.1E-26 215.1 16.2 288 190-494 3-321 (369)
25 KOG0109 RNA-binding protein LA 99.8 3.1E-21 6.7E-26 202.6 10.5 149 278-438 3-151 (346)
26 KOG0127 Nucleolar protein fibr 99.8 3.2E-20 6.9E-25 207.3 15.3 164 278-441 6-200 (678)
27 KOG0145 RNA-binding protein EL 99.8 9E-20 2E-24 188.9 14.0 245 188-437 40-358 (360)
28 KOG0127 Nucleolar protein fibr 99.8 1.7E-19 3.6E-24 201.6 17.0 168 276-443 116-384 (678)
29 KOG0148 Apoptosis-promoting RN 99.8 4.2E-19 9E-24 185.2 11.7 197 274-500 3-219 (321)
30 KOG0124 Polypyrimidine tract-b 99.8 9.2E-19 2E-23 187.8 10.5 162 276-437 112-290 (544)
31 KOG0110 RNA-binding protein (R 99.8 3.2E-18 7E-23 196.7 12.6 163 277-439 515-695 (725)
32 TIGR01645 half-pint poly-U bin 99.7 4.1E-17 8.8E-22 191.0 19.3 156 191-350 110-282 (612)
33 KOG4206 Spliceosomal protein s 99.7 4.5E-16 9.6E-21 160.1 16.0 163 273-435 5-220 (221)
34 KOG0146 RNA-binding protein ET 99.7 1.3E-16 2.8E-21 166.1 8.7 166 276-441 18-369 (371)
35 KOG4205 RNA-binding protein mu 99.7 2.3E-16 4.9E-21 171.9 10.4 163 276-440 5-179 (311)
36 KOG0144 RNA-binding protein CU 99.7 3.3E-16 7.2E-21 171.8 11.0 244 188-438 34-505 (510)
37 KOG0105 Alternative splicing f 99.6 1.9E-15 4.1E-20 150.7 13.2 149 275-425 4-176 (241)
38 KOG0110 RNA-binding protein (R 99.6 2.3E-15 4.9E-20 173.6 13.2 214 273-487 381-657 (725)
39 KOG0147 Transcriptional coacti 99.6 3.6E-16 7.7E-21 176.3 5.5 165 272-437 174-358 (549)
40 TIGR01659 sex-lethal sex-letha 99.6 6.5E-15 1.4E-19 163.8 11.8 120 359-487 104-237 (346)
41 KOG0147 Transcriptional coacti 99.5 2.4E-14 5.2E-19 161.7 11.6 162 274-435 275-526 (549)
42 KOG0106 Alternative splicing f 99.5 4.6E-14 9.9E-19 146.2 6.7 150 278-433 2-167 (216)
43 PLN03134 glycine-rich RNA-bind 99.5 3E-13 6.5E-18 133.1 12.0 81 274-354 31-116 (144)
44 PLN03134 glycine-rich RNA-bind 99.4 4.9E-13 1.1E-17 131.6 10.6 78 361-438 33-115 (144)
45 KOG1548 Transcription elongati 99.4 7.4E-12 1.6E-16 135.2 16.8 165 274-438 131-353 (382)
46 KOG1457 RNA binding protein (c 99.4 2.9E-12 6.2E-17 131.4 11.9 151 275-425 32-274 (284)
47 KOG1190 Polypyrimidine tract-b 99.4 1.1E-12 2.4E-17 143.7 8.3 165 272-437 23-228 (492)
48 KOG0124 Polypyrimidine tract-b 99.4 5.3E-12 1.1E-16 136.4 13.2 237 193-435 118-533 (544)
49 PF00076 RRM_1: RNA recognitio 99.3 3.5E-12 7.6E-17 107.3 8.4 66 280-345 1-70 (70)
50 KOG1190 Polypyrimidine tract-b 99.3 1.9E-11 4.2E-16 134.1 14.7 160 277-436 297-490 (492)
51 KOG4212 RNA-binding protein hn 99.3 2.9E-11 6.2E-16 133.3 15.9 160 276-435 43-292 (608)
52 PF00076 RRM_1: RNA recognitio 99.3 7.7E-12 1.7E-16 105.2 8.9 66 365-430 1-70 (70)
53 COG0724 RNA-binding proteins ( 99.3 1.5E-11 3.2E-16 125.6 12.8 118 277-394 115-257 (306)
54 KOG0107 Alternative splicing f 99.3 8.4E-12 1.8E-16 124.3 7.1 79 276-354 9-87 (195)
55 KOG4211 Splicing factor hnRNP- 99.2 6.9E-11 1.5E-15 132.7 14.5 160 276-438 9-183 (510)
56 KOG0131 Splicing factor 3b, su 99.2 4.8E-12 1E-16 126.6 3.2 161 191-357 12-182 (203)
57 KOG0121 Nuclear cap-binding pr 99.2 2E-11 4.4E-16 116.2 6.4 78 274-351 33-115 (153)
58 KOG0125 Ataxin 2-binding prote 99.2 7.2E-11 1.5E-15 126.9 10.4 82 273-354 92-176 (376)
59 KOG0107 Alternative splicing f 99.2 3E-11 6.5E-16 120.4 7.0 78 361-438 9-86 (195)
60 KOG0120 Splicing factor U2AF, 99.2 1.5E-10 3.2E-15 132.6 12.2 165 273-437 285-492 (500)
61 PLN03120 nucleic acid binding 99.1 1.3E-10 2.9E-15 123.5 10.4 76 277-353 4-81 (260)
62 KOG0114 Predicted RNA-binding 99.1 1.5E-10 3.3E-15 106.7 9.1 81 273-353 14-96 (124)
63 PF14259 RRM_6: RNA recognitio 99.1 1.5E-10 3.2E-15 98.7 8.4 66 280-345 1-70 (70)
64 KOG0125 Ataxin 2-binding prote 99.1 1.2E-10 2.7E-15 125.2 8.9 98 336-437 74-174 (376)
65 PLN03120 nucleic acid binding 99.1 1.9E-10 4.1E-15 122.4 10.0 75 362-437 4-80 (260)
66 KOG1456 Heterogeneous nuclear 99.1 8.1E-10 1.8E-14 120.3 14.5 167 271-438 25-200 (494)
67 PLN03213 repressor of silencin 99.1 1.2E-10 2.6E-15 129.9 7.4 78 275-352 8-88 (759)
68 PLN03213 repressor of silencin 99.1 4.4E-10 9.5E-15 125.5 11.4 84 360-443 8-94 (759)
69 smart00362 RRM_2 RNA recogniti 99.1 4.3E-10 9.3E-15 92.9 8.7 69 364-432 1-72 (72)
70 PF14259 RRM_6: RNA recognitio 99.1 3.5E-10 7.6E-15 96.4 8.1 66 365-430 1-70 (70)
71 KOG0114 Predicted RNA-binding 99.1 5.6E-10 1.2E-14 103.0 9.6 81 361-441 17-99 (124)
72 smart00362 RRM_2 RNA recogniti 99.1 5.2E-10 1.1E-14 92.4 8.4 69 279-347 1-72 (72)
73 KOG0109 RNA-binding protein LA 99.1 2.7E-10 5.8E-15 121.0 7.3 106 363-482 3-113 (346)
74 KOG4207 Predicted splicing fac 99.0 2.5E-10 5.4E-15 116.3 6.7 80 271-350 7-91 (256)
75 KOG0122 Translation initiation 99.0 4.4E-10 9.5E-15 117.1 8.7 77 361-437 188-269 (270)
76 KOG0122 Translation initiation 99.0 5.8E-10 1.2E-14 116.2 9.3 79 274-352 186-269 (270)
77 KOG0149 Predicted RNA-binding 99.0 2.9E-10 6.2E-15 118.0 6.4 80 358-438 8-92 (247)
78 KOG0113 U1 small nuclear ribon 99.0 7E-10 1.5E-14 118.2 9.4 79 273-351 97-180 (335)
79 PF13893 RRM_5: RNA recognitio 99.0 1.2E-09 2.6E-14 89.9 8.3 56 379-434 1-56 (56)
80 KOG0121 Nuclear cap-binding pr 99.0 6E-10 1.3E-14 106.2 6.8 75 361-435 35-114 (153)
81 KOG0149 Predicted RNA-binding 99.0 7.6E-10 1.7E-14 114.9 7.8 78 273-351 8-90 (247)
82 KOG4660 Protein Mei2, essentia 99.0 5.9E-10 1.3E-14 126.9 6.6 161 274-437 72-250 (549)
83 smart00360 RRM RNA recognition 99.0 1.9E-09 4.1E-14 88.6 7.8 66 282-347 1-71 (71)
84 PLN03121 nucleic acid binding 99.0 2.4E-09 5.3E-14 112.6 10.3 75 276-351 4-80 (243)
85 cd00590 RRM RRM (RNA recogniti 99.0 3.6E-09 7.7E-14 87.8 9.3 70 364-433 1-74 (74)
86 KOG4207 Predicted splicing fac 98.9 7.8E-10 1.7E-14 112.7 5.6 77 361-437 12-93 (256)
87 cd00590 RRM RRM (RNA recogniti 98.9 3.3E-09 7.2E-14 88.0 8.5 70 279-348 1-74 (74)
88 PLN03121 nucleic acid binding 98.9 2.9E-09 6.2E-14 112.1 9.5 74 362-436 5-80 (243)
89 KOG0113 U1 small nuclear ribon 98.9 3.4E-09 7.4E-14 113.1 9.9 92 350-441 89-185 (335)
90 KOG4212 RNA-binding protein hn 98.9 1.6E-08 3.5E-13 112.0 15.4 70 363-434 537-608 (608)
91 PF13893 RRM_5: RNA recognitio 98.9 3.1E-09 6.7E-14 87.4 6.9 56 294-349 1-56 (56)
92 COG0724 RNA-binding proteins ( 98.9 4.4E-09 9.5E-14 107.4 9.5 75 362-436 115-194 (306)
93 KOG0105 Alternative splicing f 98.9 1.8E-09 3.8E-14 108.6 6.2 78 361-438 5-84 (241)
94 smart00360 RRM RNA recognition 98.9 3.9E-09 8.5E-14 86.7 7.3 66 367-432 1-71 (71)
95 KOG0111 Cyclophilin-type pepti 98.9 1.2E-09 2.6E-14 112.1 4.7 80 275-354 8-92 (298)
96 KOG0111 Cyclophilin-type pepti 98.9 1.1E-09 2.4E-14 112.4 4.1 81 361-441 9-94 (298)
97 KOG0126 Predicted RNA-binding 98.8 6.5E-10 1.4E-14 111.5 -0.1 76 275-350 33-113 (219)
98 KOG0108 mRNA cleavage and poly 98.8 6.3E-09 1.4E-13 118.6 7.5 77 278-354 19-100 (435)
99 KOG0112 Large RNA-binding prot 98.8 2.6E-09 5.6E-14 126.6 4.3 160 273-439 368-533 (975)
100 KOG0130 RNA-binding protein RB 98.8 8.7E-09 1.9E-13 99.2 6.8 82 273-354 68-154 (170)
101 KOG0108 mRNA cleavage and poly 98.8 1.2E-08 2.7E-13 116.3 8.2 79 363-441 19-102 (435)
102 KOG0130 RNA-binding protein RB 98.8 9.7E-09 2.1E-13 98.8 6.0 81 358-438 68-153 (170)
103 KOG0126 Predicted RNA-binding 98.8 1.5E-09 3.2E-14 109.0 0.4 77 361-437 34-115 (219)
104 KOG1456 Heterogeneous nuclear 98.8 1.6E-07 3.4E-12 102.8 15.7 165 273-437 116-363 (494)
105 KOG0132 RNA polymerase II C-te 98.7 1.6E-08 3.4E-13 118.5 8.2 77 277-354 421-497 (894)
106 KOG0120 Splicing factor U2AF, 98.7 1.9E-08 4.2E-13 115.5 8.3 166 273-440 171-372 (500)
107 KOG0129 Predicted RNA-binding 98.7 9.5E-08 2.1E-12 108.5 13.4 142 274-418 256-432 (520)
108 KOG0146 RNA-binding protein ET 98.7 2.4E-08 5.1E-13 105.2 7.0 97 341-441 2-105 (371)
109 smart00361 RRM_1 RNA recogniti 98.6 8.2E-08 1.8E-12 83.0 7.3 57 376-432 2-70 (70)
110 KOG4454 RNA binding protein (R 98.6 1.3E-08 2.8E-13 104.8 1.5 129 274-420 6-146 (267)
111 KOG4206 Spliceosomal protein s 98.6 1.1E-07 2.3E-12 98.9 7.4 76 363-438 10-91 (221)
112 smart00361 RRM_1 RNA recogniti 98.6 1.5E-07 3.2E-12 81.4 6.9 56 291-346 2-69 (70)
113 KOG0153 Predicted RNA-binding 98.6 1.9E-07 4.1E-12 101.7 9.1 83 269-352 220-303 (377)
114 KOG0132 RNA polymerase II C-te 98.5 1.2E-07 2.7E-12 111.2 7.5 79 362-441 421-499 (894)
115 KOG0226 RNA-binding proteins [ 98.5 8.1E-08 1.8E-12 100.9 4.0 162 277-438 96-271 (290)
116 KOG0153 Predicted RNA-binding 98.5 2.8E-07 6E-12 100.5 7.8 79 357-436 223-302 (377)
117 KOG4205 RNA-binding protein mu 98.5 3.5E-07 7.5E-12 100.6 8.5 201 188-390 6-215 (311)
118 KOG4210 Nuclear localization s 98.5 1.8E-07 3.9E-12 102.1 6.0 163 275-438 86-265 (285)
119 KOG1365 RNA-binding protein Fu 98.4 7.9E-07 1.7E-11 97.7 7.7 160 277-437 161-362 (508)
120 KOG0128 RNA-binding protein SA 98.3 6.1E-08 1.3E-12 115.0 -1.5 141 275-436 665-814 (881)
121 KOG4208 Nucleolar RNA-binding 98.3 2.2E-06 4.8E-11 88.1 8.1 80 273-352 45-130 (214)
122 KOG0415 Predicted peptidyl pro 98.3 9.8E-07 2.1E-11 96.2 5.7 78 274-351 236-318 (479)
123 KOG0415 Predicted peptidyl pro 98.1 3E-06 6.5E-11 92.5 5.9 80 360-439 237-321 (479)
124 KOG4661 Hsp27-ERE-TATA-binding 98.1 6.1E-06 1.3E-10 94.2 7.7 78 274-351 402-484 (940)
125 KOG0151 Predicted splicing reg 98.1 8.1E-06 1.8E-10 95.6 8.3 79 273-351 170-256 (877)
126 KOG2193 IGF-II mRNA-binding pr 98.0 5.9E-07 1.3E-11 99.6 -1.6 149 278-435 2-155 (584)
127 KOG4208 Nucleolar RNA-binding 98.0 1.4E-05 3E-10 82.4 8.0 78 360-437 47-130 (214)
128 KOG4661 Hsp27-ERE-TATA-binding 98.0 8.7E-06 1.9E-10 93.0 6.8 76 362-437 405-485 (940)
129 KOG4454 RNA binding protein (R 98.0 4.1E-06 9E-11 86.7 2.8 76 361-437 8-87 (267)
130 KOG0151 Predicted splicing reg 97.9 1.4E-05 3E-10 93.7 6.3 78 359-436 171-256 (877)
131 KOG0106 Alternative splicing f 97.9 8.6E-06 1.9E-10 85.3 3.7 71 363-436 2-72 (216)
132 KOG0533 RRM motif-containing p 97.9 3.5E-05 7.6E-10 82.2 7.8 79 273-351 79-161 (243)
133 KOG0116 RasGAP SH3 binding pro 97.9 2.2E-05 4.7E-10 89.7 6.6 77 274-351 285-366 (419)
134 KOG4307 RNA binding protein RB 97.8 2.5E-05 5.5E-10 91.3 6.9 167 271-438 305-515 (944)
135 KOG1457 RNA binding protein (c 97.8 4.5E-05 9.7E-10 79.4 7.8 78 361-438 33-119 (284)
136 KOG0116 RasGAP SH3 binding pro 97.8 2.9E-05 6.3E-10 88.7 6.7 75 363-438 289-368 (419)
137 KOG1548 Transcription elongati 97.7 6.1E-05 1.3E-09 82.6 7.2 74 362-435 134-219 (382)
138 KOG0533 RRM motif-containing p 97.7 8.8E-05 1.9E-09 79.3 8.3 78 361-438 82-163 (243)
139 KOG1365 RNA-binding protein Fu 97.7 0.00012 2.7E-09 81.0 8.7 155 276-432 59-238 (508)
140 PF04059 RRM_2: RNA recognitio 97.6 0.00021 4.6E-09 66.4 8.2 74 278-351 2-86 (97)
141 KOG4676 Splicing factor, argin 97.6 2.5E-05 5.3E-10 86.6 2.3 157 278-436 8-225 (479)
142 KOG4209 Splicing factor RNPS1, 97.6 6.3E-05 1.4E-09 80.1 5.3 79 272-351 96-179 (231)
143 KOG4209 Splicing factor RNPS1, 97.6 7.2E-05 1.6E-09 79.6 5.7 79 358-437 97-180 (231)
144 KOG4211 Splicing factor hnRNP- 97.5 0.00013 2.8E-09 83.2 6.6 104 363-468 11-120 (510)
145 KOG0226 RNA-binding proteins [ 97.5 0.00012 2.5E-09 77.7 4.8 76 275-350 188-268 (290)
146 PF11608 Limkain-b1: Limkain b 97.5 0.00046 1E-08 62.4 7.6 69 278-351 3-76 (90)
147 PF11608 Limkain-b1: Limkain b 97.4 0.00065 1.4E-08 61.4 7.8 69 363-436 3-76 (90)
148 KOG0128 RNA-binding protein SA 97.3 5.7E-05 1.2E-09 90.5 -0.3 186 276-487 570-779 (881)
149 PF08777 RRM_3: RNA binding mo 97.1 0.00069 1.5E-08 63.8 5.3 77 364-441 3-84 (105)
150 PF08777 RRM_3: RNA binding mo 96.7 0.0043 9.3E-08 58.5 6.7 59 278-337 2-60 (105)
151 KOG0115 RNA-binding protein p5 96.7 0.0029 6.4E-08 67.5 6.0 90 325-425 5-98 (275)
152 KOG1855 Predicted RNA-binding 96.6 0.0028 6.2E-08 71.5 6.0 77 356-432 225-319 (484)
153 COG5175 MOT2 Transcriptional r 96.6 0.003 6.5E-08 69.3 5.8 78 275-352 112-203 (480)
154 COG5175 MOT2 Transcriptional r 96.5 0.0047 1E-07 67.8 6.6 76 362-437 114-203 (480)
155 KOG4849 mRNA cleavage factor I 96.5 0.2 4.3E-06 55.8 18.4 73 363-435 81-160 (498)
156 PF14605 Nup35_RRM_2: Nup53/35 96.4 0.0069 1.5E-07 50.2 5.5 52 363-416 2-53 (53)
157 PF14605 Nup35_RRM_2: Nup53/35 96.4 0.0071 1.5E-07 50.1 5.6 53 277-331 1-53 (53)
158 KOG1995 Conserved Zn-finger pr 96.4 0.003 6.5E-08 70.1 4.1 79 360-438 64-155 (351)
159 PF05172 Nup35_RRM: Nup53/35/4 96.4 0.0096 2.1E-07 55.8 6.8 74 361-436 5-91 (100)
160 KOG1995 Conserved Zn-finger pr 96.1 0.0062 1.3E-07 67.7 4.9 80 274-353 63-155 (351)
161 KOG1855 Predicted RNA-binding 96.1 0.0051 1.1E-07 69.5 4.2 74 273-347 227-319 (484)
162 KOG4210 Nuclear localization s 95.8 0.0074 1.6E-07 66.4 3.8 78 276-354 183-266 (285)
163 KOG0112 Large RNA-binding prot 95.7 0.035 7.5E-07 67.8 9.2 80 273-353 451-532 (975)
164 KOG4307 RNA binding protein RB 95.7 0.024 5.2E-07 67.4 7.5 71 278-348 868-943 (944)
165 KOG3152 TBP-binding protein, a 95.6 0.0062 1.3E-07 65.1 2.0 68 361-428 73-157 (278)
166 KOG3152 TBP-binding protein, a 95.5 0.009 2E-07 63.8 2.9 68 276-343 73-157 (278)
167 KOG2314 Translation initiation 95.2 0.038 8.3E-07 64.5 6.8 76 360-435 56-142 (698)
168 KOG2202 U2 snRNP splicing fact 95.2 0.0089 1.9E-07 63.9 1.7 61 377-437 83-148 (260)
169 PF05172 Nup35_RRM: Nup53/35/4 94.8 0.059 1.3E-06 50.6 5.9 73 276-350 5-90 (100)
170 KOG2314 Translation initiation 94.7 0.042 9.1E-07 64.1 5.5 72 277-348 58-140 (698)
171 PF08952 DUF1866: Domain of un 94.5 0.12 2.5E-06 51.7 7.4 76 360-439 25-109 (146)
172 KOG2193 IGF-II mRNA-binding pr 94.5 0.025 5.4E-07 63.9 2.8 78 363-441 2-80 (584)
173 KOG4849 mRNA cleavage factor I 94.1 0.041 8.9E-07 60.9 3.6 71 277-347 80-157 (498)
174 KOG1996 mRNA splicing factor [ 94.0 0.11 2.3E-06 56.8 6.3 61 376-436 300-366 (378)
175 KOG2416 Acinus (induces apopto 93.9 0.042 9.2E-07 64.5 3.4 79 271-350 438-520 (718)
176 KOG0129 Predicted RNA-binding 93.8 0.13 2.8E-06 59.9 6.8 62 272-333 365-432 (520)
177 KOG4676 Splicing factor, argin 93.1 0.091 2E-06 59.2 4.2 73 363-436 8-88 (479)
178 PF08952 DUF1866: Domain of un 92.8 0.27 5.9E-06 49.1 6.5 73 276-352 26-107 (146)
179 KOG2591 c-Mpl binding protein, 92.7 0.17 3.7E-06 59.2 5.8 79 266-346 164-246 (684)
180 KOG2202 U2 snRNP splicing fact 92.7 0.052 1.1E-06 58.2 1.6 58 293-350 84-146 (260)
181 KOG2135 Proteins containing th 91.7 0.19 4.2E-06 57.9 4.5 63 375-439 386-448 (526)
182 PF08675 RNA_bind: RNA binding 91.5 0.75 1.6E-05 42.0 7.2 56 277-336 9-64 (87)
183 PF15023 DUF4523: Protein of u 91.4 0.7 1.5E-05 46.1 7.4 76 358-436 82-161 (166)
184 KOG2416 Acinus (induces apopto 91.1 0.21 4.6E-06 58.8 4.2 79 359-438 441-523 (718)
185 PF15023 DUF4523: Protein of u 90.3 1 2.2E-05 45.0 7.4 76 272-350 81-160 (166)
186 KOG4285 Mitotic phosphoprotein 88.9 1.7 3.7E-05 48.0 8.6 75 361-438 196-271 (350)
187 KOG1996 mRNA splicing factor [ 88.3 0.92 2E-05 49.8 6.1 74 277-350 281-365 (378)
188 PF03467 Smg4_UPF3: Smg-4/UPF3 85.8 0.77 1.7E-05 47.3 3.7 77 274-350 4-96 (176)
189 PF10309 DUF2414: Protein of u 85.1 2.6 5.6E-05 36.5 5.9 54 362-419 5-62 (62)
190 PF08675 RNA_bind: RNA binding 84.2 4 8.7E-05 37.4 7.0 53 364-420 11-63 (87)
191 PF04847 Calcipressin: Calcipr 83.9 1.6 3.4E-05 45.4 5.0 62 290-352 8-71 (184)
192 PF04847 Calcipressin: Calcipr 83.7 2 4.4E-05 44.6 5.7 63 375-438 8-72 (184)
193 PF10309 DUF2414: Protein of u 83.6 4.7 0.0001 34.9 6.9 54 277-334 5-62 (62)
194 PF03467 Smg4_UPF3: Smg-4/UPF3 82.8 1.8 3.8E-05 44.6 4.8 75 361-435 6-96 (176)
195 PF14111 DUF4283: Domain of un 82.7 1.6 3.4E-05 42.7 4.3 100 292-395 36-138 (153)
196 KOG2135 Proteins containing th 82.4 0.69 1.5E-05 53.6 1.8 78 273-352 368-446 (526)
197 KOG2068 MOT2 transcription fac 82.1 0.75 1.6E-05 51.3 1.9 76 277-352 77-163 (327)
198 KOG2068 MOT2 transcription fac 81.1 0.68 1.5E-05 51.6 1.1 79 362-440 77-166 (327)
199 KOG4574 RNA-binding protein (c 80.6 1 2.2E-05 55.3 2.4 75 363-438 299-375 (1007)
200 KOG4285 Mitotic phosphoprotein 79.4 2.8 6E-05 46.4 5.0 70 277-349 197-267 (350)
201 KOG2591 c-Mpl binding protein, 78.5 3.8 8.2E-05 48.6 6.0 97 324-432 147-247 (684)
202 KOG4574 RNA-binding protein (c 77.9 1.3 2.8E-05 54.5 2.1 70 281-351 302-373 (1007)
203 PF07292 NID: Nmi/IFP 35 domai 76.1 3.4 7.5E-05 38.1 3.9 67 317-383 1-73 (88)
204 KOG0115 RNA-binding protein p5 75.3 2.9 6.3E-05 45.4 3.7 72 277-348 31-110 (275)
205 PF03880 DbpA: DbpA RNA bindin 75.1 5.1 0.00011 35.2 4.7 59 372-434 11-74 (74)
206 PF10567 Nab6_mRNP_bdg: RNA-re 74.3 46 0.001 37.1 12.5 147 273-420 11-212 (309)
207 PF11767 SET_assoc: Histone ly 73.4 9.1 0.0002 33.5 5.7 55 373-431 11-65 (66)
208 KOG4483 Uncharacterized conser 70.5 6.7 0.00015 44.9 5.2 52 276-332 390-445 (528)
209 KOG2253 U1 snRNP complex, subu 69.8 3.9 8.5E-05 49.3 3.4 71 359-433 37-107 (668)
210 KOG2253 U1 snRNP complex, subu 67.5 4.1 9E-05 49.2 3.0 72 273-348 36-107 (668)
211 PF07576 BRAP2: BRCA1-associat 66.8 38 0.00082 32.5 8.8 63 364-426 15-81 (110)
212 PF11767 SET_assoc: Histone ly 64.8 21 0.00046 31.3 6.1 55 288-346 11-65 (66)
213 PF07576 BRAP2: BRCA1-associat 62.1 51 0.0011 31.7 8.7 65 276-340 12-80 (110)
214 PF03880 DbpA: DbpA RNA bindin 61.6 25 0.00054 30.9 6.1 59 287-349 11-74 (74)
215 KOG2318 Uncharacterized conser 48.2 66 0.0014 38.9 8.3 78 272-349 169-305 (650)
216 KOG4019 Calcineurin-mediated s 43.1 21 0.00046 37.2 3.0 75 363-438 11-91 (193)
217 KOG2891 Surface glycoprotein [ 42.3 12 0.00027 41.0 1.2 63 277-339 149-247 (445)
218 PRK14548 50S ribosomal protein 38.0 65 0.0014 29.6 5.0 56 363-418 21-80 (84)
219 KOG0804 Cytoplasmic Zn-finger 36.5 95 0.0021 36.6 7.1 65 362-426 74-142 (493)
220 KOG4410 5-formyltetrahydrofola 35.7 94 0.002 34.6 6.6 48 277-325 330-378 (396)
221 KOG4019 Calcineurin-mediated s 35.5 29 0.00062 36.2 2.6 75 277-352 10-90 (193)
222 TIGR03636 L23_arch archaeal ri 34.8 83 0.0018 28.4 5.1 55 364-418 15-73 (77)
223 KOG2891 Surface glycoprotein [ 33.0 21 0.00046 39.2 1.3 76 362-437 149-268 (445)
224 KOG0804 Cytoplasmic Zn-finger 32.0 1.4E+02 0.003 35.4 7.4 66 276-341 73-142 (493)
225 KOG2318 Uncharacterized conser 25.6 2.4E+02 0.0052 34.4 8.1 73 361-433 173-304 (650)
226 KOG4483 Uncharacterized conser 24.6 1.5E+02 0.0032 34.6 5.9 55 361-417 390-445 (528)
227 PF02714 DUF221: Domain of unk 22.0 1.2E+02 0.0027 33.4 4.9 56 317-384 1-56 (325)
No 1
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=5.9e-49 Score=438.58 Aligned_cols=429 Identities=46% Similarity=0.613 Sum_probs=298.0
Q ss_pred ccccccccCCccccccCcchhhhccCCCcCCCccCCCCCCCcccCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCC
Q 002974 224 EDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGD 303 (861)
Q Consensus 224 ee~Dvf~s~GGmEle~d~~~s~~~s~s~~~gg~~~~~~~ng~~~Ge~~~~~~~srtLfVgNLP~~vTEedL~elFsqfG~ 303 (861)
|++|+|+++||||++.+.-.+...+++. ...++...+++|..+ +++ || .+|..+|++|+
T Consensus 2 ~d~~lf~~~G~~el~~~~~~~~~~~~~~--------~n~~~~~~~~~P~~~--s~~-~~---------~~l~a~f~~~~- 60 (549)
T KOG4660|consen 2 EDCDLFSSGGGMELDADSFDNLSVRNSD--------RNSAGFVFPEHPPGE--SRT-FV---------SELSALFEPFN- 60 (549)
T ss_pred CccccccCCCCCCcccccccchhhcccc--------cCCCccccCCCCCCC--CCC-Ch---------hhHHhhhhccC-
Confidence 6789999999999998873222221111 133456677877777 777 87 78889999881
Q ss_pred EEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCCCCCCCcccCCcceEEecccCCCcHHHHHHHh
Q 002974 304 IRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIF 383 (861)
Q Consensus 304 I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k~~~~~k~~~~~tLfVgNLp~svTeedLrelF 383 (861)
+.+. ++++.+++.++++|+|.|||..|++++|+++|
T Consensus 61 ---------------------------------~p~~-----------~~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f 96 (549)
T KOG4660|consen 61 ---------------------------------KPLR-----------PDNPSEKDMNQGTLVVFNLPRSVSNDTLLRIF 96 (549)
T ss_pred ---------------------------------CCCC-----------cCCCCcccCccceEEEEecCCcCCHHHHHHHH
Confidence 1111 15667788999999999999999999999999
Q ss_pred cccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCchhhhchhhhhhhccccCCCCCCCCC
Q 002974 384 GIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRFMVQSEQEQDDLNLCQIPFDDL 463 (861)
Q Consensus 384 skfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~~rrl~qq~eq~q~E~~vgkNLp~s~ 463 (861)
+.||+|++|+.+...+|.+||+|+|..+|++|+++|++.+|.|++|+ ++...++.+.-+....--..++..+.+++
T Consensus 97 ~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k----~~~~~~~~~~~~~~~~~~~~~~~p~a~s~ 172 (549)
T KOG4660|consen 97 GAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK----RPGGARRAMGLQSGTSFLNHFGSPLANSP 172 (549)
T ss_pred HhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc----CCCcccccchhcccchhhhhccchhhcCC
Confidence 99999999999999999999999999999999999999999999999 66666652211111111111334444444
Q ss_pred CccccCCcccEEEEeCCCCCcceeecCCCCCcccccccccccccCCCCCCCCcccccCccccccCCCCcccccccCCC-C
Q 002974 464 SSGQMVSSGVITSTCMDNGSIQVLHSATRSPAIALTESHQTSSVPNGLPSLARVGSIGKQFGHYEPNLSLDEMKFGNQ-H 542 (861)
Q Consensus 464 tee~Ls~fG~I~Sv~~enG~srGF~S~~~~p~~~~~~~~~~s~~p~~~ssp~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 542 (861)
++.+. |+ ....+|.|... + .+.++..+++.-.=+ + .
T Consensus 173 pgg~~----------------~~---~~~g~l~P~~s----~-------------------~~~~~~~~~~~~~~~-~~~ 209 (549)
T KOG4660|consen 173 PGGWP----------------RG---QLFGMLSPTRS----S-------------------ILLEHISSVDGSSPG-RET 209 (549)
T ss_pred CCCCc----------------CC---cceeeeccchh----h-------------------hhhhcchhccCcccc-ccc
Confidence 44432 11 01111333331 1 111221111111000 1 1
Q ss_pred CCCCCCCCccccCCCCCCCCCCCCccccccccccCCccccCCCCccccccCCCCCCCCCCCCccCCCCCCCccCCCCCcc
Q 002974 543 PSFHPHSLPEYHDSLANGLPYNSPSTIADIASSVGTKIKDGLDSRHIRGVSSNGHLMEPTGGVFGSPRNGSYSLHGNPYV 622 (861)
Q Consensus 543 ~~~~~hs~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~~~~~~~~g~~~~ 622 (861)
+..+. .+....+...+|..+ . .+ + |.+ .++..++.+++|+
T Consensus 210 ~~~~h----q~~~~~~~~~s~a~~--~--------------------~~-~--G~~--------~s~~~~v~t~S~~--- 249 (549)
T KOG4660|consen 210 PLLNH----QRFVEFADNRSYAFS--E--------------------PR-G--GFL--------ISNSSGVITFSGP--- 249 (549)
T ss_pred cchhh----hhhhhhccccchhhc--c--------------------cC-C--cee--------cCCCCceEEecCC---
Confidence 12111 222333444444211 1 00 1 332 3334455556555
Q ss_pred CCCCCCCCCCCCCCcccCCCCccCCCCcCCCCCCCCCCCCCCCcccCCCCC-CCcCcCCCCCCCCCccccccccCCCCCC
Q 002974 623 WNNSNSHQQHPSSPMVWPNSPSFLNGLHANRVAHMPGFPRVPPLMLNATSP-AHHHIGSAPAVNPSLWDRQHAYAGESPE 701 (861)
Q Consensus 623 w~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~hvgsap~~~~~~~~r~~~~~~~~~~ 701 (861)
.++| |++.+++ ++-+.... .|||||+||+
T Consensus 250 -------------~g~~-------n~~~~~r------------~~~~~~~~~~~~hi~~~Ps------------------ 279 (549)
T KOG4660|consen 250 -------------GGVW-------NPFPSRR------------QRQNSSSSHYEHHIGSAPS------------------ 279 (549)
T ss_pred -------------Cccc-------CCccccc------------cccccCcccccCccCCCcc------------------
Confidence 2566 4454433 11112111 2999999998
Q ss_pred CcccccccCCCCCCCCCCCCcccccc--ccccccCCCCCccCCC-CCcCCCCCcccCCCCCCCCCCccccCCCCcchHhh
Q 002974 702 TSNFHLGSLGSGGFLGRSPSHHVDIA--SQNILSHVGGNCMDMT-KNVGMRSPQQICHLFPGRNPMMSMQTSFDSSNERM 778 (861)
Q Consensus 702 ~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~g~~s~~~~~~~f~g~~~~~~~~~~~~~~~~~~ 778 (861)
..|+.+-++++|.+..+.+.+..+ .+..|.+..||++|.. +++++.+.++....|-++.-+. ..+|...+..
T Consensus 280 --~~~l~~~~~~~f~~~s~~~~~~~~~~~n~g~~~~t~~~~e~~s~n~~~e~~~rv~~~f~~~~~~~---~~~~~~~~~~ 354 (549)
T KOG4660|consen 280 --MHHLLSRISVGFNGGSGALEMNSNGQANQGFLTKTGNVTEFNSKNVGMESSPRVPKNFEGRRSYT---SQNDYPVELI 354 (549)
T ss_pred --cccccccCccccCCCCCCccccccccCCCCccccCcccccccCCCccccccCCCCcccccccccc---cccccccccc
Confidence 446677788899988888877665 4567888999999999 9999999999999999887433 3456666644
Q ss_pred hhcccccCCCCCCcccccccccchhhhhcCCCcceeEEEeccCCCCCHHHHHHHHhhhCCCcccEEeecccCCCCC-eEE
Q 002974 779 RNLSYRRNESNSNHADKKQYELDIDRILRGDDSRTTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFIYLPIDFKASL-FGF 857 (861)
Q Consensus 779 r~~~~rr~~~~~~~~~~~~~~~~~~~i~~g~d~rtT~MirnIPn~~t~~~l~~~i~~~~~~~ydf~ylp~Df~~~~-~Gy 857 (861)
.+...||...+..+.+++++++|+.+|++|++.|||+||||||||||++||+++ ||.++|+||||||||||+||| |||
T Consensus 355 ~~~~~~Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~-d~~~~gtYDFlYLPiDF~nkcNvGY 433 (549)
T KOG4660|consen 355 LNYRDRRTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAA-DEKNKGTYDFLYLPIDFKNKCNVGY 433 (549)
T ss_pred cccccchhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhh-hccccCccceEEeccccccccccce
Confidence 444559999888888899999999999999999999999999999999999999 999999999999999999999 999
Q ss_pred Eee
Q 002974 858 FFH 860 (861)
Q Consensus 858 aFi 860 (861)
|||
T Consensus 434 AFI 436 (549)
T KOG4660|consen 434 AFI 436 (549)
T ss_pred eEE
Confidence 998
No 2
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=6.9e-29 Score=290.26 Aligned_cols=291 Identities=19% Similarity=0.262 Sum_probs=215.3
Q ss_pred HhcCCCCCc-chhhhccccccCCCCCCCCCCCcccccccccCCcc-ccccCcchhhhccCCCcCCCc--cCCCCCCCccc
Q 002974 192 TIGNLLPDE-DDLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGM-ELEGDDRLFAVQKNSDFVGGV--SNQGVSAGSVV 267 (861)
Q Consensus 192 ~IGnLlpdd-DdLlagv~d~~g~~~~~~~~dD~ee~Dvf~s~GGm-Ele~d~~~s~~~s~s~~~gg~--~~~~~~ng~~~ 267 (861)
+||||.++. ++-|..++..+|.+.......|.. ....-|+ -++.....++..++..+++.. ++.....+...
T Consensus 4 ~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~----t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 4 YVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSV----TRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC----CCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 689999988 888888988888765554444321 1111122 122222223333344443211 11111111111
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcce
Q 002974 268 GEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRK 343 (861)
Q Consensus 268 Ge~~~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~ 343 (861)
+........++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..+.++.
T Consensus 80 -~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~ 158 (562)
T TIGR01628 80 -DPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKE 158 (562)
T ss_pred -cccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCce
Confidence 11112234678999999999999999999999999999985 4678999999999999999999999999999999
Q ss_pred eeeeecCCCCCC-CCcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe----CCCCccEEEEEECCHHHHHHHHHH
Q 002974 344 LDIHYSIPKDNP-SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD----TQHKHNHKFIEFYDIRAAETALRT 418 (861)
Q Consensus 344 L~V~~a~~k~~~-~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri----tgksKGfAFVeF~d~eaA~kAL~~ 418 (861)
|.|.....+... .......++|||+||+.++|+++|+++|++||+|.++++ .++.+|||||+|.+.++|.+|++.
T Consensus 159 i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~ 238 (562)
T TIGR01628 159 VYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEE 238 (562)
T ss_pred EEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHH
Confidence 999887765544 223455678999999999999999999999999999876 345689999999999999999999
Q ss_pred hCCCeeC----CcEEEEEeccCCchhh--hchhhhhhhcc-------ccCC-CCCCCCCCcccc----CCcccEEEEe--
Q 002974 419 LNRSDVA----GKQIKLEASRPGGARR--FMVQSEQEQDD-------LNLC-QIPFDDLSSGQM----VSSGVITSTC-- 478 (861)
Q Consensus 419 LNG~~I~----Gr~IkVe~Akpk~~rr--l~qq~eq~q~E-------~~vg-kNLp~s~tee~L----s~fG~I~Sv~-- 478 (861)
|+|..|. |+.|.|.+++.+.++. +....++.+.+ ..++ +||+.++++++| ..||.|++++
T Consensus 239 l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~ 318 (562)
T TIGR01628 239 MNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVM 318 (562)
T ss_pred hCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEE
Confidence 9999999 9999999998887664 11112211111 1133 999999999999 8999999998
Q ss_pred -CCCCCccee
Q 002974 479 -MDNGSIQVL 487 (861)
Q Consensus 479 -~enG~srGF 487 (861)
+.+|.++||
T Consensus 319 ~d~~g~~~g~ 328 (562)
T TIGR01628 319 LDEKGVSRGF 328 (562)
T ss_pred ECCCCCcCCe
Confidence 677889987
No 3
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=5.4e-29 Score=258.43 Aligned_cols=214 Identities=19% Similarity=0.389 Sum_probs=182.0
Q ss_pred HHHHhcCCCCCc-chhhhccccccCCCCCCCCCCCcccccccccCCccccccCcchhhhccCCCcCCCccCCCCCCCccc
Q 002974 189 EAQTIGNLLPDE-DDLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVV 267 (861)
Q Consensus 189 eaq~IGnLlpdd-DdLlagv~d~~g~~~~~~~~dD~ee~Dvf~s~GGmEle~d~~~s~~~s~s~~~gg~~~~~~~ng~~~ 267 (861)
...++|||++++ ||||+.++.++|.+..++.+-| |..+.-. ..+
T Consensus 7 rtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~--e~~v~wa-------~~p-------------------------- 51 (321)
T KOG0148|consen 7 RTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--ELKVNWA-------TAP-------------------------- 51 (321)
T ss_pred ceEEeeccChhhHHHHHHHHHHhccccccceeehh--hhccccc-------cCc--------------------------
Confidence 357899999999 9999999999999999988775 2111000 000
Q ss_pred CCCC-CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCc
Q 002974 268 GEHP-YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRR 341 (861)
Q Consensus 268 Ge~~-~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~G 341 (861)
+... ......-.+||+.|.+.++-++|++.|.+||+|.++++ |+|+|||+||.|...++|++||..|+|+.|.+
T Consensus 52 ~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~ 131 (321)
T KOG0148|consen 52 GNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGR 131 (321)
T ss_pred ccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeecc
Confidence 1001 12223668999999999999999999999999999985 89999999999999999999999999999999
Q ss_pred ceeeeeecCCCCCCCC------------cccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCH
Q 002974 342 RKLDIHYSIPKDNPSE------------KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDI 409 (861)
Q Consensus 342 r~L~V~~a~~k~~~~~------------k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~ 409 (861)
|.|+.+|+..|..... ....+++|||+|++.-++|++||+.|++||.|.+||+. +.+||+||+|.++
T Consensus 132 R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvF-k~qGYaFVrF~tk 210 (321)
T KOG0148|consen 132 RTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVF-KDQGYAFVRFETK 210 (321)
T ss_pred ceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEe-cccceEEEEecch
Confidence 9999999987753211 12457899999999999999999999999999999987 5689999999999
Q ss_pred HHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 002974 410 RAAETALRTLNRSDVAGKQIKLEASRPGG 438 (861)
Q Consensus 410 eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~ 438 (861)
|+|..||..+|+++|.|..++|.|.+...
T Consensus 211 EaAahAIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 211 EAAAHAIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred hhHHHHHHHhcCceeCceEEEEeccccCC
Confidence 99999999999999999999999998765
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=3.2e-28 Score=267.33 Aligned_cols=159 Identities=23% Similarity=0.409 Sum_probs=143.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecC
Q 002974 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (861)
Q Consensus 276 ~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~ 350 (861)
+.++|||+|||.+++|++|+++|++||+|..|++ +++++|||||+|.+.++|++||+.|+|+.|.|+.|+|.|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 4789999999999999999999999999999985 57899999999999999999999999999999999999997
Q ss_pred CCCCCCCcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeC
Q 002974 351 PKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVA 425 (861)
Q Consensus 351 ~k~~~~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~ 425 (861)
++.. .....+|||+|||..+++++|+++|++||.|..+++ .+..+|||||+|.+.++|++|++.|||..+.
T Consensus 82 ~~~~----~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~ 157 (352)
T TIGR01661 82 PSSD----SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS 157 (352)
T ss_pred cccc----ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccC
Confidence 6543 234568999999999999999999999999998775 3456899999999999999999999999988
Q ss_pred C--cEEEEEeccCCc
Q 002974 426 G--KQIKLEASRPGG 438 (861)
Q Consensus 426 G--r~IkVe~Akpk~ 438 (861)
| ++|+|.++....
T Consensus 158 g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 158 GCTEPITVKFANNPS 172 (352)
T ss_pred CCceeEEEEECCCCC
Confidence 7 678999886544
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.95 E-value=2.6e-27 Score=262.16 Aligned_cols=163 Identities=24% Similarity=0.413 Sum_probs=146.7
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeee
Q 002974 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V 346 (861)
......++|||+|||+++||++|+++|++||+|+.|++ +++++|||||+|.++++|++|++.|+++.|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 34557899999999999999999999999999999985 5778999999999999999999999999999999999
Q ss_pred eecCCCCCCCCcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCC
Q 002974 347 HYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNR 421 (861)
Q Consensus 347 ~~a~~k~~~~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG 421 (861)
.|+.+... ....++|||+|||..+++++|+++|++||+|+.|++ ++++|+||||+|.+.++|++||+.||+
T Consensus 182 ~~a~p~~~----~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng 257 (346)
T TIGR01659 182 SYARPGGE----SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN 257 (346)
T ss_pred eccccccc----ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 99876432 234578999999999999999999999999999876 455689999999999999999999999
Q ss_pred CeeCC--cEEEEEeccCCc
Q 002974 422 SDVAG--KQIKLEASRPGG 438 (861)
Q Consensus 422 ~~I~G--r~IkVe~Akpk~ 438 (861)
..+.+ ++|+|.+++...
T Consensus 258 ~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 258 VIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred CccCCCceeEEEEECCccc
Confidence 98876 789999998764
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=2.5e-27 Score=277.23 Aligned_cols=203 Identities=20% Similarity=0.325 Sum_probs=174.0
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCCC
Q 002974 279 TLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKD 353 (861)
Q Consensus 279 tLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k~ 353 (861)
+|||+|||+++||++|+++|++||.|.+|++ +++++|||||+|.+.++|++|++.|++..|.|+.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 7999999999999999999999999999985 57889999999999999999999999999999999999986432
Q ss_pred CCCCcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Q 002974 354 NPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQI 429 (861)
Q Consensus 354 ~~~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~I 429 (861)
..+....++|||+||+.++++++|+++|++||.|.+|++ .++++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 82 --~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i 159 (562)
T TIGR01628 82 --SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEV 159 (562)
T ss_pred --cccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceE
Confidence 223334678999999999999999999999999999876 34678999999999999999999999999999999
Q ss_pred EEEeccCCchhhhchhhhhhhccccCC-CCCCCCCCcccc----CCcccEEEEe---CCCCCccee
Q 002974 430 KLEASRPGGARRFMVQSEQEQDDLNLC-QIPFDDLSSGQM----VSSGVITSTC---MDNGSIQVL 487 (861)
Q Consensus 430 kVe~Akpk~~rrl~qq~eq~q~E~~vg-kNLp~s~tee~L----s~fG~I~Sv~---~enG~srGF 487 (861)
.|.....+..+. .........++ +||+.++++++| ..||.|+++. ..+|+++||
T Consensus 160 ~v~~~~~~~~~~----~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~ 221 (562)
T TIGR01628 160 YVGRFIKKHERE----AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGF 221 (562)
T ss_pred EEeccccccccc----cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccE
Confidence 998877665432 11111122344 999999999998 8999999887 667888776
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.94 E-value=2.8e-26 Score=252.00 Aligned_cols=244 Identities=16% Similarity=0.212 Sum_probs=177.7
Q ss_pred HHhcCCCCCc-chhhhccccccCCCCCCCCCCCcccccccccCCcc-ccccCcchhhhccCCCcCCCccCCCCCCCcccC
Q 002974 191 QTIGNLLPDE-DDLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGM-ELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVG 268 (861)
Q Consensus 191 q~IGnLlpdd-DdLlagv~d~~g~~~~~~~~dD~ee~Dvf~s~GGm-Ele~d~~~s~~~s~s~~~gg~~~~~~~ng~~~G 268 (861)
-+||||.++. ++-|..++..+|.+.......|... ...-|+ -++.....++..++..+++..-......-..+
T Consensus 6 l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~----g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a- 80 (352)
T TIGR01661 6 LIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVT----GQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYA- 80 (352)
T ss_pred EEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCC----CccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEee-
Confidence 3589997777 8888889998988777766554321 111122 12222222333334444431111000000001
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCc--
Q 002974 269 EHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRR-- 341 (861)
Q Consensus 269 e~~~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~G-- 341 (861)
.........++|||+|||..+++++|+++|++||.|..+++ ++.++|||||+|.+.++|++|++.|+|..+.|
T Consensus 81 ~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~ 160 (352)
T TIGR01661 81 RPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCT 160 (352)
T ss_pred cccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCc
Confidence 11112335779999999999999999999999999998874 46789999999999999999999999999876
Q ss_pred ceeeeeecCCCCCCCC----------------c-----------------------------------------------
Q 002974 342 RKLDIHYSIPKDNPSE----------------K----------------------------------------------- 358 (861)
Q Consensus 342 r~L~V~~a~~k~~~~~----------------k----------------------------------------------- 358 (861)
++|.|.|+........ .
T Consensus 161 ~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (352)
T TIGR01661 161 EPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHA 240 (352)
T ss_pred eeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccc
Confidence 5788888753321000 0
Q ss_pred -------------------------ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECC
Q 002974 359 -------------------------DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYD 408 (861)
Q Consensus 359 -------------------------~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d 408 (861)
.....+|||+|||+++++++|+++|++||.|++|++ ++.+||||||+|.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~ 320 (352)
T TIGR01661 241 AQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTN 320 (352)
T ss_pred cccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECC
Confidence 000125999999999999999999999999999986 56789999999999
Q ss_pred HHHHHHHHHHhCCCeeCCcEEEEEeccCCch
Q 002974 409 IRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (861)
Q Consensus 409 ~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~~ 439 (861)
.++|.+|++.|||..|.||+|+|.|...+..
T Consensus 321 ~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 321 YDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 9999999999999999999999999998864
No 8
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.93 E-value=3.4e-25 Score=258.18 Aligned_cols=164 Identities=19% Similarity=0.377 Sum_probs=145.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeec
Q 002974 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (861)
Q Consensus 275 ~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a 349 (861)
...++|||+|||+++++++|+++|++||.|.+|++ +++++|||||+|.+.++|++|++.|||+.|.||.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45789999999999999999999999999999985 6789999999999999999999999999999999999876
Q ss_pred CCCCCC-------CCcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHH
Q 002974 350 IPKDNP-------SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALR 417 (861)
Q Consensus 350 ~~k~~~-------~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~ 417 (861)
...... ........+|||+||+.++++++|+++|++||+|++|++ ++++||||||+|.+.++|.+||+
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~ 264 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 264 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHH
Confidence 432211 011223579999999999999999999999999999986 34679999999999999999999
Q ss_pred HhCCCeeCCcEEEEEeccCCc
Q 002974 418 TLNRSDVAGKQIKLEASRPGG 438 (861)
Q Consensus 418 ~LNG~~I~Gr~IkVe~Akpk~ 438 (861)
.||+..|+|+.|+|.++.++.
T Consensus 265 amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 265 SMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred HhCCCeeCCeEEEEEecCCCc
Confidence 999999999999999988653
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.92 E-value=1.2e-24 Score=250.72 Aligned_cols=161 Identities=20% Similarity=0.315 Sum_probs=138.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHc--CccccCcceeeeeecCCCC
Q 002974 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKAL--QNKPLRRRKLDIHYSIPKD 353 (861)
Q Consensus 276 ~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaL--nG~~L~Gr~L~V~~a~~k~ 353 (861)
|+++|||+|||++++|++|+++|++||.|..|++ .+.|+||||+|++.++|++|++.+ ++..|.|++|+|+|+..+.
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i-~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~ 79 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMM-LPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQE 79 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEE-ECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcc
Confidence 5899999999999999999999999999999987 357899999999999999999874 7789999999999997653
Q ss_pred CCCCc--------ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCC-ccEEEEEECCHHHHHHHHHHhCCCee
Q 002974 354 NPSEK--------DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHK-HNHKFIEFYDIRAAETALRTLNRSDV 424 (861)
Q Consensus 354 ~~~~k--------~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgks-KGfAFVeF~d~eaA~kAL~~LNG~~I 424 (861)
..... .....+|||+||++.+|+++|+++|++||+|.+|.+..+. +++|||+|.+.++|.+|++.|||..|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i 159 (481)
T TIGR01649 80 IKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADI 159 (481)
T ss_pred cccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcc
Confidence 21111 0122479999999999999999999999999999874333 47999999999999999999999999
Q ss_pred CC--cEEEEEeccCC
Q 002974 425 AG--KQIKLEASRPG 437 (861)
Q Consensus 425 ~G--r~IkVe~Akpk 437 (861)
.| ++|+|+|++++
T Consensus 160 ~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 160 YNGCCTLKIEYAKPT 174 (481)
T ss_pred cCCceEEEEEEecCC
Confidence 65 58999998763
No 10
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.91 E-value=7.4e-24 Score=241.32 Aligned_cols=163 Identities=26% Similarity=0.450 Sum_probs=144.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~ 347 (861)
.+.+.++|||+|||..+++++|+++|++||.|..|++ +++++|||||+|.+.++|++||. |+|+.+.|++|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 4567899999999999999999999999999999985 57889999999999999999996 99999999999999
Q ss_pred ecCCCCCCCC--------cccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC-----CCCccEEEEEECCHHHHHH
Q 002974 348 YSIPKDNPSE--------KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAET 414 (861)
Q Consensus 348 ~a~~k~~~~~--------k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit-----gksKGfAFVeF~d~eaA~k 414 (861)
++........ .....++|||+|||..+++++|+++|++||.|..|.+. ++.+|||||+|.+.++|.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred ecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 8754432211 11235799999999999999999999999999998763 4678999999999999999
Q ss_pred HHHHhCCCeeCCcEEEEEeccC
Q 002974 415 ALRTLNRSDVAGKQIKLEASRP 436 (861)
Q Consensus 415 AL~~LNG~~I~Gr~IkVe~Akp 436 (861)
|++.|||..|.|++|+|.++..
T Consensus 244 A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 244 ALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHhcCCcEECCEEEEEEEccC
Confidence 9999999999999999999884
No 11
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=1.1e-23 Score=230.77 Aligned_cols=197 Identities=20% Similarity=0.290 Sum_probs=169.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccC-cceeeeee
Q 002974 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLR-RRKLDIHY 348 (861)
Q Consensus 275 ~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~-Gr~L~V~~ 348 (861)
...+.||||.||.++.|+||.-+|++.|+|.++++ ++.+||||||.|.+.++|++|++.||++.|+ |+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 55899999999999999999999999999999984 7999999999999999999999999999997 99999987
Q ss_pred cCCCCCCCCcccCCcceEEecccCCCcHHHHHHHhcccCc-EEEEEe------CCCCccEEEEEECCHHHHHHHHHHhCC
Q 002974 349 SIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGE-IREIRD------TQHKHNHKFIEFYDIRAAETALRTLNR 421 (861)
Q Consensus 349 a~~k~~~~~k~~~~~tLfVgNLp~svTeedLrelFskfGe-I~sVri------tgksKGfAFVeF~d~eaA~kAL~~LNG 421 (861)
+. .+++|||+|||..+++++|++.|++.++ |+.|.+ ..++||||||+|+++.+|..|.++|-.
T Consensus 161 Sv----------an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~ 230 (506)
T KOG0117|consen 161 SV----------ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMP 230 (506)
T ss_pred ee----------ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccC
Confidence 75 3578999999999999999999999986 555543 346799999999999999999988754
Q ss_pred C--eeCCcEEEEEeccCCchhhhchhhhhhhccccCC-CCCCCCCCcccc----CCcccEEEEeCCCCCccee
Q 002974 422 S--DVAGKQIKLEASRPGGARRFMVQSEQEQDDLNLC-QIPFDDLSSGQM----VSSGVITSTCMDNGSIQVL 487 (861)
Q Consensus 422 ~--~I~Gr~IkVe~Akpk~~rrl~qq~eq~q~E~~vg-kNLp~s~tee~L----s~fG~I~Sv~~enG~srGF 487 (861)
. .+.|..+.|.||.|..+-. .+.....+.++ +||+.++|+|.| ..||.|+.|+.-. --+|
T Consensus 231 g~~klwgn~~tVdWAep~~e~d----ed~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~r--DYaF 297 (506)
T KOG0117|consen 231 GKIKLWGNAITVDWAEPEEEPD----EDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPR--DYAF 297 (506)
T ss_pred CceeecCCcceeeccCcccCCC----hhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeeccc--ceeE
Confidence 4 5679999999999986433 22344555666 999999999999 7889999998442 2566
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.91 E-value=1.8e-23 Score=241.06 Aligned_cols=165 Identities=16% Similarity=0.284 Sum_probs=138.9
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcC------------CCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCcccc
Q 002974 272 YGEHPSRTLFVRNINSNVEDSELKALFEQF------------GDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL 339 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTEedL~elFsqf------------G~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L 339 (861)
......++|||||||+.+|+++|+++|.+| +.|..+.+ ++.+|||||+|.+.++|++|| +|+|+.|
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-~~~kg~afVeF~~~e~A~~Al-~l~g~~~ 247 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-NKEKNFAFLEFRTVEEATFAM-ALDSIIY 247 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-CCCCCEEEEEeCCHHHHhhhh-cCCCeEe
Confidence 356678999999999999999999999975 34555555 678999999999999999999 5999999
Q ss_pred CcceeeeeecCCCCCCC-------------------------CcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe
Q 002974 340 RRRKLDIHYSIPKDNPS-------------------------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD 394 (861)
Q Consensus 340 ~Gr~L~V~~a~~k~~~~-------------------------~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri 394 (861)
.|+.|+|.......... ......++|||+|||..+++++|+++|+.||.|+.+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 99999997543221000 00122468999999999999999999999999998875
Q ss_pred -----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 002974 395 -----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (861)
Q Consensus 395 -----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~ 438 (861)
++.++|||||+|.+.++|..|++.|||..|.|++|+|.++....
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~ 376 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGA 376 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCC
Confidence 46679999999999999999999999999999999999986543
No 13
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.91 E-value=1.6e-23 Score=243.71 Aligned_cols=193 Identities=21% Similarity=0.288 Sum_probs=159.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHcCccccC-cceeeeeec
Q 002974 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLR-RRKLDIHYS 349 (861)
Q Consensus 275 ~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~-Gr~L~V~~a 349 (861)
...++|||+|||++++|++|+++|++||.|..|++ ++++||||||+|.+.++|++||+.||+..+. |+.|.|.++
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 34699999999999999999999999999999985 6889999999999999999999999999986 788888665
Q ss_pred CCCCCCCCcccCCcceEEecccCCCcHHHHHHHhcccCc-EEEEEe------CCCCccEEEEEECCHHHHHHHHHHhCCC
Q 002974 350 IPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGE-IREIRD------TQHKHNHKFIEFYDIRAAETALRTLNRS 422 (861)
Q Consensus 350 ~~k~~~~~k~~~~~tLfVgNLp~svTeedLrelFskfGe-I~sVri------tgksKGfAFVeF~d~eaA~kAL~~LNG~ 422 (861)
. ..++|||+|||.++++++|++.|+++++ ++++.+ ..+++|||||+|.++++|.+|++.|+..
T Consensus 136 ~----------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~g 205 (578)
T TIGR01648 136 V----------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPG 205 (578)
T ss_pred c----------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhcc
Confidence 3 2578999999999999999999999864 444332 2356899999999999999999988643
Q ss_pred --eeCCcEEEEEeccCCchhhhchhhhhhhccccCC-CCCCCCCCcccc----CCc--ccEEEEeCCC
Q 002974 423 --DVAGKQIKLEASRPGGARRFMVQSEQEQDDLNLC-QIPFDDLSSGQM----VSS--GVITSTCMDN 481 (861)
Q Consensus 423 --~I~Gr~IkVe~Akpk~~rrl~qq~eq~q~E~~vg-kNLp~s~tee~L----s~f--G~I~Sv~~en 481 (861)
.+.|+.|+|+|+.++.... .+.....+.++ +||+.++++++| ..| |+|+.|+...
T Consensus 206 ki~l~Gr~I~VdwA~p~~~~d----~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r 269 (578)
T TIGR01648 206 RIQLWGHVIAVDWAEPEEEVD----EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR 269 (578)
T ss_pred ceEecCceEEEEeeccccccc----ccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec
Confidence 6789999999998765221 11112223344 999999999999 788 9999997443
No 14
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.91 E-value=1.6e-23 Score=243.87 Aligned_cols=235 Identities=20% Similarity=0.296 Sum_probs=173.6
Q ss_pred HHhcCCCCCc-chhhhccccccCCCCCCCCCCCcccccccccCCcc-ccccCcchhhhccCCCcCCCccCCCCCCCcccC
Q 002974 191 QTIGNLLPDE-DDLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGM-ELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVG 268 (861)
Q Consensus 191 q~IGnLlpdd-DdLlagv~d~~g~~~~~~~~dD~ee~Dvf~s~GGm-Ele~d~~~s~~~s~s~~~gg~~~~~~~ng~~~G 268 (861)
-.||||.++. ++-|..++..++.+.......|.. ...-|+ -++.....++..++..+++..-. ++...+
T Consensus 61 lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~s-----G~sRGfaFV~F~~~e~A~~Ai~~lng~~i~----~Gr~l~ 131 (578)
T TIGR01648 61 VFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFS-----GQNRGYAFVTFCGKEEAKEAVKLLNNYEIR----PGRLLG 131 (578)
T ss_pred EEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCC-----CCccceEEEEeCCHHHHHHHHHHcCCCeec----CCcccc
Confidence 5689998877 777888888888766665544421 122233 22222222233334444431111 011100
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCC-EEEEEe------CCCcccEEEEEeCCHHHHHHHHHHcCc--ccc
Q 002974 269 EHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGD-IRTIYT------ACKHRGFVMISYYDIRAARNAMKALQN--KPL 339 (861)
Q Consensus 269 e~~~~~~~srtLfVgNLP~~vTEedL~elFsqfG~-I~svki------tgksrGyAFVeF~d~e~A~kALkaLnG--~~L 339 (861)
- ......++|||+|||+++++++|.+.|++++. +..+.+ +++++|||||+|.+.++|.+|++.|+. ..+
T Consensus 132 V--~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l 209 (578)
T TIGR01648 132 V--CISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQL 209 (578)
T ss_pred c--cccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEe
Confidence 0 11234789999999999999999999999964 333322 357899999999999999999998864 457
Q ss_pred CcceeeeeecCCCCCCCCcc-cCCcceEEecccCCCcHHHHHHHhccc--CcEEEEEeCCCCccEEEEEECCHHHHHHHH
Q 002974 340 RRRKLDIHYSIPKDNPSEKD-ANQGTLVVFNLDSSVSTEELHQIFGIY--GEIREIRDTQHKHNHKFIEFYDIRAAETAL 416 (861)
Q Consensus 340 ~Gr~L~V~~a~~k~~~~~k~-~~~~tLfVgNLp~svTeedLrelFskf--GeI~sVritgksKGfAFVeF~d~eaA~kAL 416 (861)
.|+.|.|.|+.++....+.. ...++|||+||+.++++++|+++|++| |+|++|++. ++||||+|.+.++|++|+
T Consensus 210 ~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~---rgfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 210 WGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI---RDYAFVHFEDREDAVKAM 286 (578)
T ss_pred cCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee---cCeEEEEeCCHHHHHHHH
Confidence 89999999998876543322 234789999999999999999999999 999999864 689999999999999999
Q ss_pred HHhCCCeeCCcEEEEEeccCCch
Q 002974 417 RTLNRSDVAGKQIKLEASRPGGA 439 (861)
Q Consensus 417 ~~LNG~~I~Gr~IkVe~Akpk~~ 439 (861)
+.||+.+|.|+.|+|.|++++..
T Consensus 287 ~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 287 DELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred HHhCCCEECCEEEEEEEccCCCc
Confidence 99999999999999999998753
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.90 E-value=3.9e-23 Score=238.31 Aligned_cols=164 Identities=21% Similarity=0.289 Sum_probs=142.1
Q ss_pred CCCCcEEEEcCCCC-CCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCC
Q 002974 274 EHPSRTLFVRNINS-NVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (861)
Q Consensus 274 ~~~srtLfVgNLP~-~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k 352 (861)
..++++|||+||++ .+++++|+++|++||.|..|++-...+|||||+|.+.++|++|++.|||..|.|++|+|.+++.+
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 45789999999998 69999999999999999999975556899999999999999999999999999999999988543
Q ss_pred CCCCC------------c---------------------ccCCcceEEecccCCCcHHHHHHHhcccCc--EEEEEeCCC
Q 002974 353 DNPSE------------K---------------------DANQGTLVVFNLDSSVSTEELHQIFGIYGE--IREIRDTQH 397 (861)
Q Consensus 353 ~~~~~------------k---------------------~~~~~tLfVgNLp~svTeedLrelFskfGe--I~sVritgk 397 (861)
..... + .....+|||+|||.++++++|+++|+.||. |+.|++...
T Consensus 352 ~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~ 431 (481)
T TIGR01649 352 NVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPK 431 (481)
T ss_pred cccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecC
Confidence 11000 0 012458999999999999999999999998 888887543
Q ss_pred C---ccEEEEEECCHHHHHHHHHHhCCCeeCCcE------EEEEeccCC
Q 002974 398 K---HNHKFIEFYDIRAAETALRTLNRSDVAGKQ------IKLEASRPG 437 (861)
Q Consensus 398 s---KGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~------IkVe~Akpk 437 (861)
. +++|||+|.+.++|.+||..||+..|.++. |+|.+++++
T Consensus 432 ~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 432 DNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 3 789999999999999999999999999875 999999875
No 16
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=99.89 E-value=3.6e-24 Score=196.37 Aligned_cols=49 Identities=61% Similarity=1.127 Sum_probs=48.6
Q ss_pred ceeEEEeccCCCCCHHHHHHHHhhhCCCcccEEeecccCCCCC-eEEEee
Q 002974 812 RTTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFIYLPIDFKASL-FGFFFH 860 (861)
Q Consensus 812 rtT~MirnIPn~~t~~~l~~~i~~~~~~~ydf~ylp~Df~~~~-~GyaFi 860 (861)
||||||||||||||++||+++||+.|+|+||||||||||+++| +|||||
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFV 50 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFV 50 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEE
Confidence 8999999999999999999999999999999999999999999 999998
No 17
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=5.2e-23 Score=224.58 Aligned_cols=165 Identities=21% Similarity=0.414 Sum_probs=145.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHcCccc-cCc--ceee
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY-----TACKHRGFVMISYYDIRAARNAMKALQNKP-LRR--RKLD 345 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svk-----itgksrGyAFVeF~d~e~A~kALkaLnG~~-L~G--r~L~ 345 (861)
+.+.-+|||+-||..++|+||+++|++||.|.+|. .++.++|||||.|.+.++|.+|+.+|+++. |.| .+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 35678999999999999999999999999999986 378899999999999999999999998865 555 5788
Q ss_pred eeecCCCCCCCCcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCC
Q 002974 346 IHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD----TQHKHNHKFIEFYDIRAAETALRTLNR 421 (861)
Q Consensus 346 V~~a~~k~~~~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri----tgksKGfAFVeF~d~eaA~kAL~~LNG 421 (861)
|+|+.....+ -...++|||+-|+..++|.+++++|++||.|++|.+ .+.+||||||+|.+.+.|..||++|||
T Consensus 111 vk~Ad~E~er---~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng 187 (510)
T KOG0144|consen 111 VKYADGERER---IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNG 187 (510)
T ss_pred ecccchhhhc---cccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhcc
Confidence 8888654332 244789999999999999999999999999999976 567899999999999999999999999
Q ss_pred C-eeCC--cEEEEEeccCCchhh
Q 002974 422 S-DVAG--KQIKLEASRPGGARR 441 (861)
Q Consensus 422 ~-~I~G--r~IkVe~Akpk~~rr 441 (861)
. .+.| .+|.|+||+++..|.
T Consensus 188 ~~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 188 TQTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred ceeeccCCCceEEEecccCCCch
Confidence 8 5666 689999999887665
No 18
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=5.3e-22 Score=217.72 Aligned_cols=164 Identities=22% Similarity=0.426 Sum_probs=145.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCC-EEEEEe------CCCcccEEEEEeCCHHHHHHHHHHcC-c-cccCcceee
Q 002974 275 HPSRTLFVRNINSNVEDSELKALFEQFGD-IRTIYT------ACKHRGFVMISYYDIRAARNAMKALQ-N-KPLRRRKLD 345 (861)
Q Consensus 275 ~~srtLfVgNLP~~vTEedL~elFsqfG~-I~svki------tgksrGyAFVeF~d~e~A~kALkaLn-G-~~L~Gr~L~ 345 (861)
...++|||||||++.++++|.+.|++.++ |+.|.+ +.++||||||+|++...|..|.+.|- + ..++|..+.
T Consensus 162 van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~t 241 (506)
T KOG0117|consen 162 VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAIT 241 (506)
T ss_pred eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcce
Confidence 46899999999999999999999999986 555542 57899999999999999999998764 3 458899999
Q ss_pred eeecCCCCCCCCcccC-CcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCee
Q 002974 346 IHYSIPKDNPSEKDAN-QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDV 424 (861)
Q Consensus 346 V~~a~~k~~~~~k~~~-~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I 424 (861)
|.||.++....+.... -+.|||+||+.++|+|.|+++|++||+|+.|+.. |.||||.|.+.++|.+|++.+||++|
T Consensus 242 VdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~---rDYaFVHf~eR~davkAm~~~ngkel 318 (506)
T KOG0117|consen 242 VDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP---RDYAFVHFAEREDAVKAMKETNGKEL 318 (506)
T ss_pred eeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecc---cceeEEeecchHHHHHHHHHhcCcee
Confidence 9999998887655333 4679999999999999999999999999999854 77999999999999999999999999
Q ss_pred CCcEEEEEeccCCchhh
Q 002974 425 AGKQIKLEASRPGGARR 441 (861)
Q Consensus 425 ~Gr~IkVe~Akpk~~rr 441 (861)
.|..|.|.+|+|..+++
T Consensus 319 dG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 319 DGSPIEVTLAKPVDKKK 335 (506)
T ss_pred cCceEEEEecCChhhhc
Confidence 99999999999987655
No 19
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=1.1e-21 Score=202.93 Aligned_cols=161 Identities=24% Similarity=0.425 Sum_probs=145.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY-----TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svk-----itgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
+...++|.|.-||..+|++||+.||...|+|++|+ +++.+.||+||.|-++++|++|+..|||..|+.+.|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 44567899999999999999999999999999998 4899999999999999999999999999999999999999
Q ss_pred cCCCCCCCCcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEE-----eCCCCccEEEEEECCHHHHHHHHHHhCCCe
Q 002974 349 SIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIR-----DTQHKHNHKFIEFYDIRAAETALRTLNRSD 423 (861)
Q Consensus 349 a~~k~~~~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVr-----itgksKGfAFVeF~d~eaA~kAL~~LNG~~ 423 (861)
+.|..+ .+...+|||.+||..+|..||.++|++||.|..-+ +++.+||.+||.|....+|++||+.|||..
T Consensus 118 ARPSs~----~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~ 193 (360)
T KOG0145|consen 118 ARPSSD----SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK 193 (360)
T ss_pred ccCChh----hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC
Confidence 987543 34567899999999999999999999999987654 367889999999999999999999999998
Q ss_pred eCC--cEEEEEeccCCc
Q 002974 424 VAG--KQIKLEASRPGG 438 (861)
Q Consensus 424 I~G--r~IkVe~Akpk~ 438 (861)
-.| .+|.|+++....
T Consensus 194 P~g~tepItVKFannPs 210 (360)
T KOG0145|consen 194 PSGCTEPITVKFANNPS 210 (360)
T ss_pred CCCCCCCeEEEecCCcc
Confidence 776 689999986544
No 20
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.3e-21 Score=218.36 Aligned_cols=195 Identities=20% Similarity=0.287 Sum_probs=169.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCCCC
Q 002974 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 354 (861)
Q Consensus 278 rtLfVgNLP~~vTEedL~elFsqfG~I~svki---tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k~~ 354 (861)
..|||| +++||..|.++|+.+|+|+++++ .. +.|||||.|.++++|++||++||...+.|++|+|.|+.....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~ 77 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDAT-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS 77 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCC-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc
Confidence 468999 99999999999999999999874 33 999999999999999999999999999999999999975332
Q ss_pred CCCcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC---CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Q 002974 355 PSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT---QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKL 431 (861)
Q Consensus 355 ~~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit---gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkV 431 (861)
. |||.||+++++..+|.++|+.||+|.+|++. ..+||| ||+|+++++|.+|+..+||..+.|++|.|
T Consensus 78 ~---------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~v 147 (369)
T KOG0123|consen 78 L---------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYV 147 (369)
T ss_pred e---------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEE
Confidence 2 9999999999999999999999999999872 237899 99999999999999999999999999999
Q ss_pred EeccCCchhhhchhhhhhhccccCC-CCCCCCCCcccc----CCcccEEEEe---CCCCCccee
Q 002974 432 EASRPGGARRFMVQSEQEQDDLNLC-QIPFDDLSSGQM----VSSGVITSTC---MDNGSIQVL 487 (861)
Q Consensus 432 e~Akpk~~rrl~qq~eq~q~E~~vg-kNLp~s~tee~L----s~fG~I~Sv~---~enG~srGF 487 (861)
....++.+|...... ..+....+. ++++.+.+.+.+ ..||.|+++. ...|+++||
T Consensus 148 g~~~~~~er~~~~~~-~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~ 210 (369)
T KOG0123|consen 148 GLFERKEEREAPLGE-YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGF 210 (369)
T ss_pred eeccchhhhcccccc-hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCc
Confidence 999988876522222 444555555 888888888888 8999999997 677878887
No 21
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.86 E-value=4e-21 Score=221.62 Aligned_cols=162 Identities=20% Similarity=0.336 Sum_probs=136.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeec
Q 002974 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (861)
Q Consensus 275 ~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a 349 (861)
...++|||+|||..+++++|+++|++||.|..+.+ +++++|||||+|.+.++|++|++.|+|..|.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999998874 5779999999999999999999999999999999999998
Q ss_pred CCCCCCCC------------------------cccCCcceEEecccCC--C--------cHHHHHHHhcccCcEEEEEeC
Q 002974 350 IPKDNPSE------------------------KDANQGTLVVFNLDSS--V--------STEELHQIFGIYGEIREIRDT 395 (861)
Q Consensus 350 ~~k~~~~~------------------------k~~~~~tLfVgNLp~s--v--------TeedLrelFskfGeI~sVrit 395 (861)
........ ......+|+|.|+... + ..++|+++|++||.|+.|.+.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 64322110 0123467899999532 1 236899999999999999873
Q ss_pred C--------CCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 002974 396 Q--------HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (861)
Q Consensus 396 g--------ksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akp 436 (861)
. ..+|+|||+|.+.++|++|+.+|||..|+|+.|.|.|...
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 2 2368999999999999999999999999999999999764
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.86 E-value=4.4e-21 Score=218.67 Aligned_cols=162 Identities=22% Similarity=0.386 Sum_probs=137.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecC
Q 002974 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (861)
Q Consensus 276 ~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~ 350 (861)
..++|||+|||..+++++|+++|++||.|..|.+ +++++|||||+|.+.++|.+|++.|+|..|.|+.|.|.|+.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 3799999999999999999999999999999985 35789999999999999999999999999999999999953
Q ss_pred CCCCCC----------------------------------C---------------------------------------
Q 002974 351 PKDNPS----------------------------------E--------------------------------------- 357 (861)
Q Consensus 351 ~k~~~~----------------------------------~--------------------------------------- 357 (861)
...... .
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (457)
T TIGR01622 265 DSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGAL 344 (457)
T ss_pred CCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccccccccccccccc
Confidence 210000 0
Q ss_pred -------------cccCCcceEEecccCCCc----------HHHHHHHhcccCcEEEEEeC-CCCccEEEEEECCHHHHH
Q 002974 358 -------------KDANQGTLVVFNLDSSVS----------TEELHQIFGIYGEIREIRDT-QHKHNHKFIEFYDIRAAE 413 (861)
Q Consensus 358 -------------k~~~~~tLfVgNLp~svT----------eedLrelFskfGeI~sVrit-gksKGfAFVeF~d~eaA~ 413 (861)
......+|+|.||-...+ .+||++.|++||.|++|.+. +...|++||+|.++++|.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~ 424 (457)
T TIGR01622 345 AIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAAL 424 (457)
T ss_pred ccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHH
Confidence 012235788888854433 37899999999999999875 677899999999999999
Q ss_pred HHHHHhCCCeeCCcEEEEEeccCC
Q 002974 414 TALRTLNRSDVAGKQIKLEASRPG 437 (861)
Q Consensus 414 kAL~~LNG~~I~Gr~IkVe~Akpk 437 (861)
+|++.|||+.|+|+.|.|.+....
T Consensus 425 ~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 425 AAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred HHHHHhcCcccCCeEEEEEEEcHH
Confidence 999999999999999999998653
No 23
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.86 E-value=1.4e-21 Score=193.98 Aligned_cols=163 Identities=23% Similarity=0.342 Sum_probs=144.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeec
Q 002974 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (861)
Q Consensus 275 ~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a 349 (861)
....||||+||+..++++.|++||-+.|+|..+++ +.+.+|||||+|.++++|+-|++.|+...|.||+|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 45789999999999999999999999999999984 6789999999999999999999999999999999999988
Q ss_pred CCCCCCCCcccCCcceEEecccCCCcHHHHHHHhcccCcEEEE----E--eCCCCccEEEEEECCHHHHHHHHHHhCCCe
Q 002974 350 IPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREI----R--DTQHKHNHKFIEFYDIRAAETALRTLNRSD 423 (861)
Q Consensus 350 ~~k~~~~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sV----r--itgksKGfAFVeF~d~eaA~kAL~~LNG~~ 423 (861)
... . ..-....+|||+||.+.+++..|.+.|+.||.|... + .++++++||||.|.+.+++.+|+..+||..
T Consensus 87 s~~-~--~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~ 163 (203)
T KOG0131|consen 87 SAH-Q--KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQY 163 (203)
T ss_pred ccc-c--ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccch
Confidence 721 1 122334799999999999999999999999988762 2 367889999999999999999999999999
Q ss_pred eCCcEEEEEeccCCchh
Q 002974 424 VAGKQIKLEASRPGGAR 440 (861)
Q Consensus 424 I~Gr~IkVe~Akpk~~r 440 (861)
+..++|.|.++..++.+
T Consensus 164 l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 164 LCNRPITVSYAFKKDTK 180 (203)
T ss_pred hcCCceEEEEEEecCCC
Confidence 99999999999876543
No 24
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=3.3e-21 Score=215.14 Aligned_cols=288 Identities=20% Similarity=0.284 Sum_probs=214.0
Q ss_pred HHHhcCCCCCc-chhhhccccccCCCCCCCCCCCcccccccccCCcc-ccccCcchhhhccCCCcCCCccCCCCCCCccc
Q 002974 190 AQTIGNLLPDE-DDLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGM-ELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVV 267 (861)
Q Consensus 190 aq~IGnLlpdd-DdLlagv~d~~g~~~~~~~~dD~ee~Dvf~s~GGm-Ele~d~~~s~~~s~s~~~gg~~~~~~~ng~~~ 267 (861)
..++| |++ ++.|-+++...+.+-....-.|. . .=|. -+-.....++..++..++. ...+++..
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t------slgy~yvnf~~~~da~~A~~~~n~-----~~~~~~~~ 67 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T------SLGYAYVNFQQPADAERALDTMNF-----DVLKGKPI 67 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C------ccceEEEecCCHHHHHHHHHHcCC-----cccCCcEE
Confidence 34677 788 88888888888777666554443 1 1122 1111222333444555543 22222111
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEeCCHHHHHHHHHHcCccccCccee
Q 002974 268 GEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKL 344 (861)
Q Consensus 268 Ge~~~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki---tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L 344 (861)
-- -...++...|||.||+++++..+|.++|+.||+|++|++ ...++|| ||+|+++++|++|++.+||..+.+++|
T Consensus 68 ri-m~s~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki 145 (369)
T KOG0123|consen 68 RI-MWSQRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKI 145 (369)
T ss_pred Ee-ehhccCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCee
Confidence 00 011223333999999999999999999999999999996 2348999 999999999999999999999999999
Q ss_pred eeeecCCCCCCCCcc----cCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe----CCCCccEEEEEECCHHHHHHHH
Q 002974 345 DIHYSIPKDNPSEKD----ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD----TQHKHNHKFIEFYDIRAAETAL 416 (861)
Q Consensus 345 ~V~~a~~k~~~~~k~----~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri----tgksKGfAFVeF~d~eaA~kAL 416 (861)
.|.....+..+.... ...+.++|.|++.+++++.|..+|..||.|..+.+ .++.++|+||+|++.++|..|+
T Consensus 146 ~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av 225 (369)
T KOG0123|consen 146 YVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAV 225 (369)
T ss_pred EEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHH
Confidence 999888776543322 33578999999999999999999999999999875 4567899999999999999999
Q ss_pred HHhCCCeeCCcEEEEEeccCCchhh--hchhhhhhhccc-------cCC-CCCCCCCCcccc----CCcccEEEEe---C
Q 002974 417 RTLNRSDVAGKQIKLEASRPGGARR--FMVQSEQEQDDL-------NLC-QIPFDDLSSGQM----VSSGVITSTC---M 479 (861)
Q Consensus 417 ~~LNG~~I~Gr~IkVe~Akpk~~rr--l~qq~eq~q~E~-------~vg-kNLp~s~tee~L----s~fG~I~Sv~---~ 479 (861)
+.|++..+.+..+.|..+..+.++. +..+.++...+. .++ +|++..++.+.| ..||+|++++ +
T Consensus 226 ~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~ 305 (369)
T KOG0123|consen 226 ETLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVD 305 (369)
T ss_pred HhccCCcCCccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEec
Confidence 9999999999999999999876665 333322222221 233 889999999999 7999999988 8
Q ss_pred CCCCccee-ecCCCCC
Q 002974 480 DNGSIQVL-HSATRSP 494 (861)
Q Consensus 480 enG~srGF-~S~~~~p 494 (861)
+.|+++|| +-....+
T Consensus 306 ~~g~skG~gfV~fs~~ 321 (369)
T KOG0123|consen 306 ENGKSKGFGFVEFSSP 321 (369)
T ss_pred cCCCccceEEEEcCCH
Confidence 88999998 4433333
No 25
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.84 E-value=3.1e-21 Score=202.57 Aligned_cols=149 Identities=24% Similarity=0.397 Sum_probs=139.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCCCCCCC
Q 002974 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSE 357 (861)
Q Consensus 278 rtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k~~~~~ 357 (861)
-+|||||||..+++.+|+.||++||+|.+|.+ -|.||||..++..+|+.|++.|+|..|+|..|.|+-++.|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDI---vKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK----- 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDI---VKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK----- 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeee---ecccceEEeecccccHHHHhhcccceecceEEEEEecccc-----
Confidence 36999999999999999999999999999997 5789999999999999999999999999999999988766
Q ss_pred cccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 002974 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (861)
Q Consensus 358 k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk 437 (861)
.+..++|+|+||.+.++.++|+..|++||.|.+|++. |+|+||.|.-.++|..|++.|++.++.|++++|..+..+
T Consensus 75 -sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv---kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 75 -SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV---KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred -CCCccccccCCCCccccCHHHhhhhcccCCceeeeee---cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 3356899999999999999999999999999999975 789999999999999999999999999999999998765
Q ss_pred c
Q 002974 438 G 438 (861)
Q Consensus 438 ~ 438 (861)
-
T Consensus 151 l 151 (346)
T KOG0109|consen 151 L 151 (346)
T ss_pred c
Confidence 4
No 26
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=3.2e-20 Score=207.34 Aligned_cols=164 Identities=20% Similarity=0.351 Sum_probs=146.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCC
Q 002974 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (861)
Q Consensus 278 rtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k 352 (861)
.||||++||++++.++|.++|+.+|+|..|.+ +..+|||+||.|.-.+++++|++.+.+..+.||.|.|.++.++
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 79999999999999999999999999999985 4578999999999999999999999999999999999998765
Q ss_pred CCCCC--------------------c--ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC----CCCccEEEEEE
Q 002974 353 DNPSE--------------------K--DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT----QHKHNHKFIEF 406 (861)
Q Consensus 353 ~~~~~--------------------k--~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit----gksKGfAFVeF 406 (861)
....+ . +....+|.|+|||+.+.+.+|+.+|+.||.|.+|.|. ++-.|||||+|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 33210 0 1125689999999999999999999999999999874 33469999999
Q ss_pred CCHHHHHHHHHHhCCCeeCCcEEEEEeccCCchhh
Q 002974 407 YDIRAAETALRTLNRSDVAGKQIKLEASRPGGARR 441 (861)
Q Consensus 407 ~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~~rr 441 (861)
.+..+|..|++.+|+..|.||+|.|.||.++....
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye 200 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYE 200 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeeccccccc
Confidence 99999999999999999999999999999988554
No 27
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=9e-20 Score=188.87 Aligned_cols=245 Identities=17% Similarity=0.239 Sum_probs=178.9
Q ss_pred HHHHHhcCCCCCc--chhhhccccccCCCCCCCCCCCcccccccccCCcccc-ccCcchhhhccCCCcCCCccCCCCCCC
Q 002974 188 IEAQTIGNLLPDE--DDLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMEL-EGDDRLFAVQKNSDFVGGVSNQGVSAG 264 (861)
Q Consensus 188 ~eaq~IGnLlpdd--DdLlagv~d~~g~~~~~~~~dD~ee~Dvf~s~GGmEl-e~d~~~s~~~s~s~~~gg~~~~~~~ng 264 (861)
-..-.|=|.||.. .|-+..++..+|....++.+.|. +....=|+.+ -.....++..++..++|..-..+-...
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDK----itGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKV 115 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDK----ITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKV 115 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeecc----ccccccccceeeecChHHHHHHHhhhcceeeccceEEE
Confidence 3455677888876 55556666667777777777763 4444333321 111112334445666652222111111
Q ss_pred cccCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHcCcccc
Q 002974 265 SVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY-----TACKHRGFVMISYYDIRAARNAMKALQNKPL 339 (861)
Q Consensus 265 ~~~Ge~~~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svk-----itgksrGyAFVeF~d~e~A~kALkaLnG~~L 339 (861)
..+ ....+.....+|||.+||+.+|..||+.+|++||.|..-+ +++.+||.+||.|....+|+.||+.|||..-
T Consensus 116 SyA-RPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P 194 (360)
T KOG0145|consen 116 SYA-RPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKP 194 (360)
T ss_pred Eec-cCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCC
Confidence 111 1112344578999999999999999999999999987766 4799999999999999999999999999887
Q ss_pred Cc--ceeeeeecCCCCCCC-------------C----------------------------------------------c
Q 002974 340 RR--RKLDIHYSIPKDNPS-------------E----------------------------------------------K 358 (861)
Q Consensus 340 ~G--r~L~V~~a~~k~~~~-------------~----------------------------------------------k 358 (861)
.| .+|.|+|+....... . .
T Consensus 195 ~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~ 274 (360)
T KOG0145|consen 195 SGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGG 274 (360)
T ss_pred CCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCC
Confidence 65 478998885321100 0 0
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
.....+|||-||.++.+|.-|+++|++||.|..|++ +.+.|||+||.+.+.++|..||..|||..+++|.|.|.+
T Consensus 275 ~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsF 354 (360)
T KOG0145|consen 275 PGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 354 (360)
T ss_pred CCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEE
Confidence 001358999999999999999999999999999876 467899999999999999999999999999999999998
Q ss_pred ccCC
Q 002974 434 SRPG 437 (861)
Q Consensus 434 Akpk 437 (861)
...+
T Consensus 355 Ktnk 358 (360)
T KOG0145|consen 355 KTNK 358 (360)
T ss_pred ecCC
Confidence 7654
No 28
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=1.7e-19 Score=201.63 Aligned_cols=168 Identities=23% Similarity=0.403 Sum_probs=144.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCC
Q 002974 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (861)
Q Consensus 276 ~srtLfVgNLP~~vTEedL~elFsqfG~I~svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~ 351 (861)
+.-+|.|+|||+.+.+.+|+.+|++||.|..|.+ .++-+|||||+|.+..+|.+|++.+|+..|.||+|-|.||.+
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 4779999999999999999999999999999986 456679999999999999999999999999999999999965
Q ss_pred CCCCC-----------------------------------------Cc--cc----------------------------
Q 002974 352 KDNPS-----------------------------------------EK--DA---------------------------- 360 (861)
Q Consensus 352 k~~~~-----------------------------------------~k--~~---------------------------- 360 (861)
++.-. +. +.
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 42100 00 00
Q ss_pred ---------------CCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHh-
Q 002974 361 ---------------NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTL- 419 (861)
Q Consensus 361 ---------------~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~L- 419 (861)
...+|||+|||+++|+++|.+.|++||+|.++.+ ++.++|.|||.|.+..+|..||.+.
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 0258999999999999999999999999999764 7889999999999999999999976
Q ss_pred ----CC-CeeCCcEEEEEeccCCchhhhc
Q 002974 420 ----NR-SDVAGKQIKLEASRPGGARRFM 443 (861)
Q Consensus 420 ----NG-~~I~Gr~IkVe~Akpk~~rrl~ 443 (861)
.| ..|.||.|+|..+..+.+...+
T Consensus 356 pa~e~g~~ll~GR~Lkv~~Av~RkeA~dm 384 (678)
T KOG0127|consen 356 PASEDGSVLLDGRLLKVTLAVTRKEAADM 384 (678)
T ss_pred ccCCCceEEEeccEEeeeeccchHHHHHH
Confidence 23 5678999999999998766644
No 29
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=4.2e-19 Score=185.22 Aligned_cols=197 Identities=19% Similarity=0.284 Sum_probs=152.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCCC
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKD 353 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k~ 353 (861)
....|||||+||+.+|||+-|..||.+.|.|..|++ .|+ .|+|.|+....
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~----------i~~--------------------e~~v~wa~~p~ 52 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKV----------IFD--------------------ELKVNWATAPG 52 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhcccccccee----------ehh--------------------hhccccccCcc
Confidence 456899999999999999999999999999999986 121 67788887665
Q ss_pred CCCCcccC-CcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCc
Q 002974 354 NPSEKDAN-QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGK 427 (861)
Q Consensus 354 ~~~~k~~~-~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr 427 (861)
+.++.... .-.+||+.|...++.++||+.|.+||+|.++++ ++++|||+||.|.+.++|+.||..|||..|++|
T Consensus 53 nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R 132 (321)
T KOG0148|consen 53 NQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRR 132 (321)
T ss_pred cCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccc
Confidence 55444433 457999999999999999999999999999775 678999999999999999999999999999999
Q ss_pred EEEEEeccCCchhh-hchh-hhh-----hhccccCC-CCCCCCCCcccc----CCcccEEEEeCCCCCccee--ecCCCC
Q 002974 428 QIKLEASRPGGARR-FMVQ-SEQ-----EQDDLNLC-QIPFDDLSSGQM----VSSGVITSTCMDNGSIQVL--HSATRS 493 (861)
Q Consensus 428 ~IkVe~Akpk~~rr-l~qq-~eq-----~q~E~~vg-kNLp~s~tee~L----s~fG~I~Sv~~enG~srGF--~S~~~~ 493 (861)
.|+-.||..|..+. ..+. .++ .-+...|+ .+++.-++++.+ ++||.|..+|.-..+-..| ++....
T Consensus 133 ~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEa 212 (321)
T KOG0148|consen 133 TIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEA 212 (321)
T ss_pred eeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccceEEEEecchhh
Confidence 99999998776443 1111 221 12222355 788887787777 9999999999443333334 555554
Q ss_pred Ccccccc
Q 002974 494 PAIALTE 500 (861)
Q Consensus 494 p~~~~~~ 500 (861)
.-.++.+
T Consensus 213 AahAIv~ 219 (321)
T KOG0148|consen 213 AAHAIVQ 219 (321)
T ss_pred HHHHHHH
Confidence 4444443
No 30
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=9.2e-19 Score=187.84 Aligned_cols=162 Identities=20% Similarity=0.404 Sum_probs=143.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecC
Q 002974 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIY-----TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (861)
Q Consensus 276 ~srtLfVgNLP~~vTEedL~elFsqfG~I~svk-----itgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~ 350 (861)
--|+||||.|.+.+.|+.|+..|..||+|+++. +++++||||||+|+-++.|+-|++.|||..+.||.|+|....
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 378999999999999999999999999999997 489999999999999999999999999999999999998553
Q ss_pred CCCC--C-----CCcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHH
Q 002974 351 PKDN--P-----SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRT 418 (861)
Q Consensus 351 ~k~~--~-----~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~ 418 (861)
.-.. + .++.....+|||..+.++++++||+..|+.||+|+.|.+ ....|||+||+|.+..+-..|+..
T Consensus 192 NmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAias 271 (544)
T KOG0124|consen 192 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 271 (544)
T ss_pred CCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhh
Confidence 2111 1 122234679999999999999999999999999999986 345689999999999999999999
Q ss_pred hCCCeeCCcEEEEEeccCC
Q 002974 419 LNRSDVAGKQIKLEASRPG 437 (861)
Q Consensus 419 LNG~~I~Gr~IkVe~Akpk 437 (861)
||-..++|.-|+|..+...
T Consensus 272 MNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 272 MNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred cchhhcccceEecccccCC
Confidence 9999999999999777543
No 31
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.75 E-value=3.2e-18 Score=196.75 Aligned_cols=163 Identities=24% Similarity=0.431 Sum_probs=141.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCC--------CcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTAC--------KHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 277 srtLfVgNLP~~vTEedL~elFsqfG~I~svkitg--------ksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
.++|||.||+++++.++|..+|...|.|.++.+.. .+.|||||+|.+.++|++|++.|+|+.|.|+.|.|.+
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 34499999999999999999999999999997621 1349999999999999999999999999999999999
Q ss_pred cCCCCCC-----CCcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCC-----CccEEEEEECCHHHHHHHHHH
Q 002974 349 SIPKDNP-----SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRT 418 (861)
Q Consensus 349 a~~k~~~-----~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgk-----sKGfAFVeF~d~eaA~kAL~~ 418 (861)
+..+... ...+...++|.|+|||+..+..+++++|..||.|++|++..+ .+|||||+|-++++|..|+.+
T Consensus 595 S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~a 674 (725)
T KOG0110|consen 595 SENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDA 674 (725)
T ss_pred ccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHh
Confidence 9722111 011222578999999999999999999999999999997433 378999999999999999999
Q ss_pred hCCCeeCCcEEEEEeccCCch
Q 002974 419 LNRSDVAGKQIKLEASRPGGA 439 (861)
Q Consensus 419 LNG~~I~Gr~IkVe~Akpk~~ 439 (861)
|..+-++||+|.++|++....
T Consensus 675 l~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 675 LGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred hcccceechhhheehhccchH
Confidence 999999999999999998764
No 32
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.74 E-value=4.1e-17 Score=191.01 Aligned_cols=156 Identities=16% Similarity=0.242 Sum_probs=107.0
Q ss_pred HHhcCCCCCc-chhhhccccccCCCCCCCCCCCcccccccccCCcc-ccccCcchhhhccCCCcCCCccC--C---CCC-
Q 002974 191 QTIGNLLPDE-DDLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGM-ELEGDDRLFAVQKNSDFVGGVSN--Q---GVS- 262 (861)
Q Consensus 191 q~IGnLlpdd-DdLlagv~d~~g~~~~~~~~dD~ee~Dvf~s~GGm-Ele~d~~~s~~~s~s~~~gg~~~--~---~~~- 262 (861)
-+||||..+. ++-|..++..+|.+.......|.. ....-|+ .++.+....+..++..+++..-. . ...
T Consensus 110 LfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~----TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 110 VYVGSISFELREDTIRRAFDPFGPIKSINMSWDPA----TGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred EEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCC----CCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 3599998877 888899999898877766655421 1222333 22223222333334444431111 0 000
Q ss_pred CC----cccCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHH
Q 002974 263 AG----SVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKA 333 (861)
Q Consensus 263 ng----~~~Ge~~~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALka 333 (861)
+. .............++|||+|||+++++++|+++|+.||.|..|++ ++++||||||+|.+.++|.+|++.
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 00 000011112234689999999999999999999999999999985 467999999999999999999999
Q ss_pred cCccccCcceeeeeecC
Q 002974 334 LQNKPLRRRKLDIHYSI 350 (861)
Q Consensus 334 LnG~~L~Gr~L~V~~a~ 350 (861)
||+..|.|+.|+|.++.
T Consensus 266 mNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCV 282 (612)
T ss_pred hCCCeeCCeEEEEEecC
Confidence 99999999999998765
No 33
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.69 E-value=4.5e-16 Score=160.07 Aligned_cols=163 Identities=26% Similarity=0.454 Sum_probs=143.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHH----HhhcCCCEEEEEe--CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKA----LFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~e----lFsqfG~I~svki--tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V 346 (861)
+..+..||||.||+..+..++|++ ||++||+|..|.. +.+.||.|||.|.+.+.|-.|+++|+|..+.|+.++|
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 345667999999999999999988 9999999999985 7899999999999999999999999999999999999
Q ss_pred eecCCCCCCCCc----------------------------------------------ccCCcceEEecccCCCcHHHHH
Q 002974 347 HYSIPKDNPSEK----------------------------------------------DANQGTLVVFNLDSSVSTEELH 380 (861)
Q Consensus 347 ~~a~~k~~~~~k----------------------------------------------~~~~~tLfVgNLp~svTeedLr 380 (861)
+||..+.+.-.+ ...+..||+.|||..++.+.|.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 999754321000 1234579999999999999999
Q ss_pred HHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeC-CcEEEEEecc
Q 002974 381 QIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVA-GKQIKLEASR 435 (861)
Q Consensus 381 elFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~-Gr~IkVe~Ak 435 (861)
.+|.+|.--++|+.....++.|||+|.+...|..|...|.+..|. ...++|.+++
T Consensus 165 ~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 165 DLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999999988888999999999999999999999999887 7888887764
No 34
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=1.3e-16 Score=166.14 Aligned_cols=166 Identities=22% Similarity=0.419 Sum_probs=140.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHcCccc-cCc--ceeeeee
Q 002974 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKP-LRR--RKLDIHY 348 (861)
Q Consensus 276 ~srtLfVgNLP~~vTEedL~elFsqfG~I~svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~-L~G--r~L~V~~ 348 (861)
+.++||||-|.+.-.|+|++.+|..||.|.+|.+ .+.+||||||.|.+..+|+.||..|+|.. +.| ..|.|+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 5789999999999999999999999999999985 68899999999999999999999999964 333 3455555
Q ss_pred cCCCCCCC------------------------------------------------------------------------
Q 002974 349 SIPKDNPS------------------------------------------------------------------------ 356 (861)
Q Consensus 349 a~~k~~~~------------------------------------------------------------------------ 356 (861)
+...+++.
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 43211000
Q ss_pred --------------------------------------------------------------------------------
Q 002974 357 -------------------------------------------------------------------------------- 356 (861)
Q Consensus 357 -------------------------------------------------------------------------------- 356 (861)
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence
Q ss_pred ----------------------CcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCH
Q 002974 357 ----------------------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDI 409 (861)
Q Consensus 357 ----------------------~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~ 409 (861)
.+..+.++|||-.||.+..+.||.++|-.||.|++.++ ++.+|.|+||.|.+.
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 00001368999999999999999999999999999765 678999999999999
Q ss_pred HHHHHHHHHhCCCeeCCcEEEEEeccCCchhh
Q 002974 410 RAAETALRTLNRSDVAGKQIKLEASRPGGARR 441 (861)
Q Consensus 410 eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~~rr 441 (861)
.+|++||.+|||..|+-|+|+|...+||++.|
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 99999999999999999999999999987543
No 35
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.66 E-value=2.3e-16 Score=171.94 Aligned_cols=163 Identities=15% Similarity=0.351 Sum_probs=143.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecC
Q 002974 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (861)
Q Consensus 276 ~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~ 350 (861)
..++|||++|+++++++.|++.|.+||+|..|.+ +++++||+||+|++.+...+++. .....|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 6899999999999999999999999999999984 68899999999999999999985 55677999999999999
Q ss_pred CCCCCCCcc--cCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCe
Q 002974 351 PKDNPSEKD--ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSD 423 (861)
Q Consensus 351 ~k~~~~~k~--~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~ 423 (861)
++....+.. ....+|||++|+..++++++++.|.+||.|..+.+ +.+.++|+||.|.+++++.+++. ..-+.
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 887654332 23568999999999999999999999998887653 45678999999999999999988 67889
Q ss_pred eCCcEEEEEeccCCchh
Q 002974 424 VAGKQIKLEASRPGGAR 440 (861)
Q Consensus 424 I~Gr~IkVe~Akpk~~r 440 (861)
|.|+++.|..|.|++..
T Consensus 163 ~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEVM 179 (311)
T ss_pred ecCceeeEeeccchhhc
Confidence 99999999999998743
No 36
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=3.3e-16 Score=171.84 Aligned_cols=244 Identities=16% Similarity=0.278 Sum_probs=173.8
Q ss_pred HHHHHhcCCCCCc-chhhhccccccCCCCCCCCCCCcccccccccCCcc-cccc--Ccchhhhcc----CCCcCCCccCC
Q 002974 188 IEAQTIGNLLPDE-DDLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGM-ELEG--DDRLFAVQK----NSDFVGGVSNQ 259 (861)
Q Consensus 188 ~eaq~IGnLlpdd-DdLlagv~d~~g~~~~~~~~dD~ee~Dvf~s~GGm-Ele~--d~~~s~~~s----~s~~~gg~~~~ 259 (861)
.-..++|-+--.- +.-|-.++..+|.+-..+.++|. .....-|- .+.. ....+.+.. .-.+.|...
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk----~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~-- 107 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDK----STGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHH-- 107 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeeccc----ccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCc--
Confidence 3344566553333 66677888888888888888874 32333332 1111 111111111 111111100
Q ss_pred CCCCCcccCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHcC
Q 002974 260 GVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQ 335 (861)
Q Consensus 260 ~~~ng~~~Ge~~~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki----tgksrGyAFVeF~d~e~A~kALkaLn 335 (861)
...-+.+..........++||||-|++.++|.|++++|.+||.|++|++ .+.+||||||.|.+.+-|..||++||
T Consensus 108 -pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~n 186 (510)
T KOG0144|consen 108 -PVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALN 186 (510)
T ss_pred -ceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhc
Confidence 0001111111122235889999999999999999999999999999985 57899999999999999999999999
Q ss_pred ccc-cCc--ceeeeeecCCCCCCCCcc-----------------------------------------------------
Q 002974 336 NKP-LRR--RKLDIHYSIPKDNPSEKD----------------------------------------------------- 359 (861)
Q Consensus 336 G~~-L~G--r~L~V~~a~~k~~~~~k~----------------------------------------------------- 359 (861)
|.. +.| .+|.|+|+.+++++..+.
T Consensus 187 g~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L 266 (510)
T KOG0144|consen 187 GTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPL 266 (510)
T ss_pred cceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCC
Confidence 965 554 578998886553211000
Q ss_pred --------------------------------------------------------------------------------
Q 002974 360 -------------------------------------------------------------------------------- 359 (861)
Q Consensus 360 -------------------------------------------------------------------------------- 359 (861)
T Consensus 267 ~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n 346 (510)
T KOG0144|consen 267 GPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYN 346 (510)
T ss_pred CCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcc
Confidence
Q ss_pred ---------------------------------------------------------------------------cCCcc
Q 002974 360 ---------------------------------------------------------------------------ANQGT 364 (861)
Q Consensus 360 ---------------------------------------------------------------------------~~~~t 364 (861)
..-.+
T Consensus 347 ~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGan 426 (510)
T KOG0144|consen 347 LAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGAN 426 (510)
T ss_pred cccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccc
Confidence 00137
Q ss_pred eEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 002974 365 LVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (861)
Q Consensus 365 LfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~ 438 (861)
|||.+||.+.-+.+|-..|..||.|++.++ ++-+|.|+||.|++..+|..||..|||..|+.++++|...+.+.
T Consensus 427 lfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 427 LFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRN 505 (510)
T ss_pred eeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccC
Confidence 999999999999999999999999998654 56679999999999999999999999999999999999988765
No 37
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=1.9e-15 Score=150.72 Aligned_cols=149 Identities=19% Similarity=0.303 Sum_probs=128.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCc--ccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCC
Q 002974 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKH--RGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (861)
Q Consensus 275 ~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgks--rGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k 352 (861)
+.+++|||+|||.++.|.||.+||.+||.|+.|.++... -.||||+|+++.+|+.||..-+|..+.|..|+|+++..-
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 458999999999999999999999999999999875443 469999999999999999999999999999999998654
Q ss_pred CCCC----------------------CcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHH
Q 002974 353 DNPS----------------------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIR 410 (861)
Q Consensus 353 ~~~~----------------------~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~e 410 (861)
.... .......+|.|.+||++-+++||++...+-|+|....+. .-+++.|+|...|
T Consensus 84 r~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~--rDg~GvV~~~r~e 161 (241)
T KOG0105|consen 84 RSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQ--RDGVGVVEYLRKE 161 (241)
T ss_pred CcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeee--cccceeeeeeehh
Confidence 2111 111235689999999999999999999999999888765 3569999999999
Q ss_pred HHHHHHHHhCCCeeC
Q 002974 411 AAETALRTLNRSDVA 425 (861)
Q Consensus 411 aA~kAL~~LNG~~I~ 425 (861)
+.+-|++.|....+.
T Consensus 162 DMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 162 DMKYAVRKLDDQKFR 176 (241)
T ss_pred hHHHHHHhhcccccc
Confidence 999999999877654
No 38
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=2.3e-15 Score=173.63 Aligned_cols=214 Identities=21% Similarity=0.317 Sum_probs=165.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCC
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k 352 (861)
.++..+.|+|+|||..+..++|..+|..||+|..+.+. ..---|+|.|.+..+|++|++.|....+...++++.|+...
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp-~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~d 459 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP-PGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPED 459 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC-cccceeeeeecCccchHHHHHHhchhhhccCccccccChhh
Confidence 45567899999999999999999999999999999764 22235999999999999999999999999888888776311
Q ss_pred CC--------------------CCC------------cc--------------cCCcceEEecccCCCcHHHHHHHhccc
Q 002974 353 DN--------------------PSE------------KD--------------ANQGTLVVFNLDSSVSTEELHQIFGIY 386 (861)
Q Consensus 353 ~~--------------------~~~------------k~--------------~~~~tLfVgNLp~svTeedLrelFskf 386 (861)
.- +.+ ++ ...++|||.||+++.+.++|...|.++
T Consensus 460 vf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~ 539 (725)
T KOG0110|consen 460 VFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQ 539 (725)
T ss_pred hccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhc
Confidence 00 000 00 012349999999999999999999999
Q ss_pred CcEEEEEeCCC--------CccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCchhhhchh-hhhhhccccCCC
Q 002974 387 GEIREIRDTQH--------KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRFMVQ-SEQEQDDLNLCQ 457 (861)
Q Consensus 387 GeI~sVritgk--------sKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~~rrl~qq-~eq~q~E~~vgk 457 (861)
|.|.+|.|..+ +.|||||+|.+.++|+.|++.|+|+.|.|+.|.|+++..+.+-..-.+ ...+.--+.+-+
T Consensus 540 G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVR 619 (725)
T KOG0110|consen 540 GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTKILVR 619 (725)
T ss_pred CeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccceeeee
Confidence 99999876322 239999999999999999999999999999999999983332221111 111111223449
Q ss_pred CCCCCCCcccc----CCcccEEEEe----CCCCCccee
Q 002974 458 IPFDDLSSGQM----VSSGVITSTC----MDNGSIQVL 487 (861)
Q Consensus 458 NLp~s~tee~L----s~fG~I~Sv~----~enG~srGF 487 (861)
|+|...+-..+ .+||+|.+|+ ...+-+|||
T Consensus 620 NipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF 657 (725)
T KOG0110|consen 620 NIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGF 657 (725)
T ss_pred ccchHHHHHHHHHHHhcccceeeeccchhhcchhhccc
Confidence 99999987777 8999999999 234456776
No 39
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.61 E-value=3.6e-16 Score=176.27 Aligned_cols=165 Identities=23% Similarity=0.361 Sum_probs=143.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeee
Q 002974 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V 346 (861)
..++..+|+|+--|...++..+|.++|+.+|+|+.|++ +..++|.|||+|.|.+....|+ +|.|+.+.|.+|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEe
Confidence 45678999999999999999999999999999999974 6789999999999999999999 69999999999999
Q ss_pred eecCCCCCCCCc----------ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHH
Q 002974 347 HYSIPKDNPSEK----------DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRA 411 (861)
Q Consensus 347 ~~a~~k~~~~~k----------~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~ea 411 (861)
+......+.... ...-..|||+||..++++++|+.+|+.||.|+.|.+ ++..|||+||+|.+.++
T Consensus 253 q~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 253 QLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred cccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 876543332100 011223999999999999999999999999999864 67889999999999999
Q ss_pred HHHHHHHhCCCeeCCcEEEEEeccCC
Q 002974 412 AETALRTLNRSDVAGKQIKLEASRPG 437 (861)
Q Consensus 412 A~kAL~~LNG~~I~Gr~IkVe~Akpk 437 (861)
|.+|++.|||.+|.|+.|+|..-..+
T Consensus 333 ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 333 ARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred HHHHHHHhccceecCceEEEEEeeee
Confidence 99999999999999999999876543
No 40
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.58 E-value=6.5e-15 Score=163.75 Aligned_cols=120 Identities=24% Similarity=0.326 Sum_probs=103.0
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
....++|||+|||+++|+++|+++|+.||+|++|++ +++++|||||+|.++++|++||+.||+..|.+++|+|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 345789999999999999999999999999999876 456789999999999999999999999999999999999
Q ss_pred ccCCchhhhchhhhhhhccccCC-CCCCCCCCcccc----CCcccEEEEe----CCCCCccee
Q 002974 434 SRPGGARRFMVQSEQEQDDLNLC-QIPFDDLSSGQM----VSSGVITSTC----MDNGSIQVL 487 (861)
Q Consensus 434 Akpk~~rrl~qq~eq~q~E~~vg-kNLp~s~tee~L----s~fG~I~Sv~----~enG~srGF 487 (861)
+++.... .....++ .||+.++++++| .+||.|+.++ ..+|+++||
T Consensus 184 a~p~~~~---------~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~ 237 (346)
T TIGR01659 184 ARPGGES---------IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGV 237 (346)
T ss_pred ccccccc---------cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceE
Confidence 9875311 1122344 999999999999 8999998887 458888886
No 41
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.54 E-value=2.4e-14 Score=161.69 Aligned_cols=162 Identities=23% Similarity=0.367 Sum_probs=130.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
..|-+.||||||..+++|++|+.+|+.||.|..|.+ ++.++||+||+|.+.++|++|++.|||..|.||.|+|..
T Consensus 275 ~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~ 354 (549)
T KOG0147|consen 275 TGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSV 354 (549)
T ss_pred ccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEE
Confidence 345555999999999999999999999999999873 789999999999999999999999999999999999854
Q ss_pred cCCCCCCCC--------------------------------------------------------------------cc-
Q 002974 349 SIPKDNPSE--------------------------------------------------------------------KD- 359 (861)
Q Consensus 349 a~~k~~~~~--------------------------------------------------------------------k~- 359 (861)
-..+-...+ +.
T Consensus 355 v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~ 434 (549)
T KOG0147|consen 355 VTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPAD 434 (549)
T ss_pred eeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccc
Confidence 322110000 00
Q ss_pred ------cCCcceEEecc--cCCCc--------HHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCe
Q 002974 360 ------ANQGTLVVFNL--DSSVS--------TEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSD 423 (861)
Q Consensus 360 ------~~~~tLfVgNL--p~svT--------eedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~ 423 (861)
....++.+.|+ |...| .+++.+.+.+||+|..|.+...+-|+.||.|.+.++|..|+.+|||.+
T Consensus 435 ~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrW 514 (549)
T KOG0147|consen 435 ASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRW 514 (549)
T ss_pred cccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhh
Confidence 01123333443 11111 278889999999999999988888999999999999999999999999
Q ss_pred eCCcEEEEEecc
Q 002974 424 VAGKQIKLEASR 435 (861)
Q Consensus 424 I~Gr~IkVe~Ak 435 (861)
|.||.|...|-.
T Consensus 515 F~gr~Ita~~~~ 526 (549)
T KOG0147|consen 515 FAGRMITAKYLP 526 (549)
T ss_pred hccceeEEEEee
Confidence 999999998864
No 42
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=4.6e-14 Score=146.25 Aligned_cols=150 Identities=23% Similarity=0.401 Sum_probs=130.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCCCCC--
Q 002974 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP-- 355 (861)
Q Consensus 278 rtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k~~~-- 355 (861)
..+||++||+.+.+.+|..+|..||.|..+.+ ..||+||+|.+..+|+.|+-.|+++.|.+..+.|.|+......
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m---k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g 78 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM---KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRG 78 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee---ecccceeccCchhhhhcccchhcCceecceeeeeecccccccccC
Confidence 47999999999999999999999999999987 4579999999999999999999999999988999998753110
Q ss_pred ----C----------CcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCC
Q 002974 356 ----S----------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNR 421 (861)
Q Consensus 356 ----~----------~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG 421 (861)
. ........+.|.++...+.+.+|.+.|.++|.+..... ..+++||+|...++|.+|+..|++
T Consensus 79 ~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~ 155 (216)
T KOG0106|consen 79 RPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRALEKLDG 155 (216)
T ss_pred CCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcchhccc
Confidence 0 11234568999999999999999999999999955443 678999999999999999999999
Q ss_pred CeeCCcEEEEEe
Q 002974 422 SDVAGKQIKLEA 433 (861)
Q Consensus 422 ~~I~Gr~IkVe~ 433 (861)
..+.++.|.+..
T Consensus 156 ~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 156 KKLNGRRISVEK 167 (216)
T ss_pred hhhcCceeeecc
Confidence 999999999933
No 43
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.47 E-value=3e-13 Score=133.11 Aligned_cols=81 Identities=23% Similarity=0.439 Sum_probs=74.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
...+++|||+|||++++|++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+++.|.|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 456889999999999999999999999999999985 578899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 002974 349 SIPKDN 354 (861)
Q Consensus 349 a~~k~~ 354 (861)
+.++..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 976544
No 44
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.43 E-value=4.9e-13 Score=131.61 Aligned_cols=78 Identities=18% Similarity=0.366 Sum_probs=72.3
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Ak 435 (861)
..++|||+||++.+++++|+++|++||+|++|++ +++++|||||+|.+.++|++|++.||+..|.|++|+|+++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 4578999999999999999999999999999876 45679999999999999999999999999999999999998
Q ss_pred CCc
Q 002974 436 PGG 438 (861)
Q Consensus 436 pk~ 438 (861)
++.
T Consensus 113 ~~~ 115 (144)
T PLN03134 113 DRP 115 (144)
T ss_pred cCC
Confidence 764
No 45
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.39 E-value=7.4e-12 Score=135.20 Aligned_cols=165 Identities=16% Similarity=0.241 Sum_probs=135.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEE--------Ee----CCCcccEEEEEeCCHHHHHHHHHHcCccccCc
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTI--------YT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRR 341 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~I~sv--------ki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~G 341 (861)
..-+..|||.|||.++|.+++.++|++||-|..- ++ .|+-||=|.+.|-..++++-|++.|++..++|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 3447779999999999999999999999987553 22 58889999999999999999999999999999
Q ss_pred ceeeeeecCCCCC-----------------------------C-----CCcccCCcceEEecccC----CCc-------H
Q 002974 342 RKLDIHYSIPKDN-----------------------------P-----SEKDANQGTLVVFNLDS----SVS-------T 376 (861)
Q Consensus 342 r~L~V~~a~~k~~-----------------------------~-----~~k~~~~~tLfVgNLp~----svT-------e 376 (861)
++|+|+.|+-+.. . ..+....++|.+.|+=. ..+ +
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 9999988742100 0 01123357899999821 222 4
Q ss_pred HHHHHHhcccCcEEEEEeC-CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 002974 377 EELHQIFGIYGEIREIRDT-QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (861)
Q Consensus 377 edLrelFskfGeI~sVrit-gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~ 438 (861)
++|++-+.+||.|..|.+. .++.|.+-|.|.+.++|..||+.|+|+.+.||+|.......+.
T Consensus 291 edl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred HHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 7788889999999998874 5678999999999999999999999999999999998876554
No 46
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.37 E-value=2.9e-12 Score=131.44 Aligned_cols=151 Identities=21% Similarity=0.314 Sum_probs=118.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE--eCCC----cccEEEEEeCCHHHHHHHHHHcCccccC---cceee
Q 002974 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY--TACK----HRGFVMISYYDIRAARNAMKALQNKPLR---RRKLD 345 (861)
Q Consensus 275 ~~srtLfVgNLP~~vTEedL~elFsqfG~I~svk--itgk----srGyAFVeF~d~e~A~kALkaLnG~~L~---Gr~L~ 345 (861)
..-|||||.+||.++...||..||..|--.+.+. .+.+ .+.+|||.|.+..+|..|+.+|||..+. +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 3479999999999999999999999986555543 3333 3479999999999999999999999886 77888
Q ss_pred eeecCCCCCCCC----------------------c---------------------------c-----------------
Q 002974 346 IHYSIPKDNPSE----------------------K---------------------------D----------------- 359 (861)
Q Consensus 346 V~~a~~k~~~~~----------------------k---------------------------~----------------- 359 (861)
|++++......+ . .
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P 191 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAP 191 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCC
Confidence 887753110000 0 0
Q ss_pred ----------------cCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCC-CCccEEEEEECCHHHHHHHHHHhCCC
Q 002974 360 ----------------ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-HKHNHKFIEFYDIRAAETALRTLNRS 422 (861)
Q Consensus 360 ----------------~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritg-ksKGfAFVeF~d~eaA~kAL~~LNG~ 422 (861)
....||||.||..+++|++|+++|+.|--....++.. .....|||+|++.+.|..|+..|.|.
T Consensus 192 ~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~ 271 (284)
T KOG1457|consen 192 SANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGN 271 (284)
T ss_pred cccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcc
Confidence 0024899999999999999999999997655555432 23457999999999999999999988
Q ss_pred eeC
Q 002974 423 DVA 425 (861)
Q Consensus 423 ~I~ 425 (861)
.|.
T Consensus 272 ~~s 274 (284)
T KOG1457|consen 272 LLS 274 (284)
T ss_pred eec
Confidence 763
No 47
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.36 E-value=1.1e-12 Score=143.68 Aligned_cols=165 Identities=20% Similarity=0.296 Sum_probs=132.5
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccc--cCcceeeeeec
Q 002974 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKP--LRRRKLDIHYS 349 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~--L~Gr~L~V~~a 349 (861)
....+++.|.+||||++++|+||..++.+||+|..+.. .+.+..|||+|.|.++|..-+....... ++|++|.|+|+
T Consensus 23 ~~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~-lkGknQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~s 101 (492)
T KOG1190|consen 23 SMAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLM-LKGKNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYS 101 (492)
T ss_pred cccCCcceeEeccCCccccHHHHHHhcccccceeeeee-eccchhhhhhhcchhhhhheeecccccCccccCcceeehhh
Confidence 34568999999999999999999999999999999986 4455599999999999988555444433 67899999887
Q ss_pred CCCCCCC---------------------------C-------cccC--CcceEEecccCCCcHHHHHHHhcccCcEEEEE
Q 002974 350 IPKDNPS---------------------------E-------KDAN--QGTLVVFNLDSSVSTEELHQIFGIYGEIREIR 393 (861)
Q Consensus 350 ~~k~~~~---------------------------~-------k~~~--~~tLfVgNLp~svTeedLrelFskfGeI~sVr 393 (861)
..+.-.. . .+.. --+++|.|+-+.++-|-|.++|++||.|..|.
T Consensus 102 n~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIi 181 (492)
T KOG1190|consen 102 NHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKII 181 (492)
T ss_pred hHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEE
Confidence 4321000 0 0000 11578889999999999999999999999987
Q ss_pred eCCCCccE-EEEEECCHHHHHHHHHHhCCCeeCC--cEEEEEeccCC
Q 002974 394 DTQHKHNH-KFIEFYDIRAAETALRTLNRSDVAG--KQIKLEASRPG 437 (861)
Q Consensus 394 itgksKGf-AFVeF~d~eaA~kAL~~LNG~~I~G--r~IkVe~Akpk 437 (861)
...+..+| |+|+|.|.+.|..|..+|+|+.|.. +.|++.+++-.
T Consensus 182 TF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt 228 (492)
T KOG1190|consen 182 TFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLT 228 (492)
T ss_pred EEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcc
Confidence 77777887 9999999999999999999998863 78999888754
No 48
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=5.3e-12 Score=136.42 Aligned_cols=237 Identities=19% Similarity=0.306 Sum_probs=168.8
Q ss_pred hcCCCCCc-chhhhccccccCCCCCCCCCCCcccccccccCCcc---ccccCcchhhhccCCCcCC---CccCCCCCCCc
Q 002974 193 IGNLLPDE-DDLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGM---ELEGDDRLFAVQKNSDFVG---GVSNQGVSAGS 265 (861)
Q Consensus 193 IGnLlpdd-DdLlagv~d~~g~~~~~~~~dD~ee~Dvf~s~GGm---Ele~d~~~s~~~s~s~~~g---g~~~~~~~ng~ 265 (861)
+|.+.-+- +|.+..-++-||..+..+..=| .+...+-|+ |.|-.+. +-.+...+++ +..|-+...-.
T Consensus 118 VGSIsfEl~EDtiR~AF~PFGPIKSInMSWD----p~T~kHKgFAFVEYEvPEa--AqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 118 VGSISFELREDTIRRAFDPFGPIKSINMSWD----PATGKHKGFAFVEYEVPEA--AQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred eeeeEEEechHHHHhhccCCCCcceeecccc----cccccccceEEEEEeCcHH--HHHHHHHhccccccCccccccCCC
Confidence 67766655 8999999999999998887765 366667776 4443321 1222333443 22221111111
Q ss_pred ccCC-------CCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHH
Q 002974 266 VVGE-------HPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKA 333 (861)
Q Consensus 266 ~~Ge-------~~~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALka 333 (861)
.-++ ...+.+.-.+|||..+.++.+|+||+..|+.||+|..|++ ...+|||+||+|.+..+...|+..
T Consensus 192 NmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAias 271 (544)
T KOG0124|consen 192 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 271 (544)
T ss_pred CCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhh
Confidence 1111 1123455789999999999999999999999999999985 578999999999999999999999
Q ss_pred cCccccCcceeeeeecCCCCC-----------------------------------------------------------
Q 002974 334 LQNKPLRRRKLDIHYSIPKDN----------------------------------------------------------- 354 (861)
Q Consensus 334 LnG~~L~Gr~L~V~~a~~k~~----------------------------------------------------------- 354 (861)
||-..|.|+-|+|..+....+
T Consensus 272 MNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~ 351 (544)
T KOG0124|consen 272 MNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGT 351 (544)
T ss_pred cchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCC
Confidence 999999999888854321000
Q ss_pred ---------------------C----------------------------CCc---------------------------
Q 002974 355 ---------------------P----------------------------SEK--------------------------- 358 (861)
Q Consensus 355 ---------------------~----------------------------~~k--------------------------- 358 (861)
+ .++
T Consensus 352 l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~s 431 (544)
T KOG0124|consen 352 LPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSS 431 (544)
T ss_pred ccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCcc
Confidence 0 000
Q ss_pred -----------ccCCcceEEecc--cCCCc---HHHHHHHhcccCcEEEEEeCCCCcc---------EEEEEECCHHHHH
Q 002974 359 -----------DANQGTLVVFNL--DSSVS---TEELHQIFGIYGEIREIRDTQHKHN---------HKFIEFYDIRAAE 413 (861)
Q Consensus 359 -----------~~~~~tLfVgNL--p~svT---eedLrelFskfGeI~sVritgksKG---------fAFVeF~d~eaA~ 413 (861)
....+.|.++|+ |.+++ +.+|++.+++||.|.+|-+...+.+ --||+|....++.
T Consensus 432 ARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~ 511 (544)
T KOG0124|consen 432 ARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETH 511 (544)
T ss_pred HHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHH
Confidence 001346777887 55555 4789999999999999877543332 3699999999999
Q ss_pred HHHHHhCCCeeCCcEEEEEecc
Q 002974 414 TALRTLNRSDVAGKQIKLEASR 435 (861)
Q Consensus 414 kAL~~LNG~~I~Gr~IkVe~Ak 435 (861)
+|+++|+|+.|+|+++..+...
T Consensus 512 rak~ALdGRfFgGr~VvAE~YD 533 (544)
T KOG0124|consen 512 RAKQALDGRFFGGRKVVAEVYD 533 (544)
T ss_pred HHHHhhccceecCceeehhhhh
Confidence 9999999999999999876554
No 49
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.34 E-value=3.5e-12 Score=107.29 Aligned_cols=66 Identities=30% Similarity=0.616 Sum_probs=62.2
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceee
Q 002974 280 LFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (861)
Q Consensus 280 LfVgNLP~~vTEedL~elFsqfG~I~svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~ 345 (861)
|||+|||.++++++|+++|++||.|..+++ .+..++||||+|.+.++|++|++.|+|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999875 467899999999999999999999999999999885
No 50
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.32 E-value=1.9e-11 Score=134.06 Aligned_cols=160 Identities=23% Similarity=0.325 Sum_probs=136.7
Q ss_pred CcEEEEcCCCC-CCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCCCCC
Q 002974 277 SRTLFVRNINS-NVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP 355 (861)
Q Consensus 277 srtLfVgNLP~-~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k~~~ 355 (861)
+..|.|.||.. .||.+-|..+|.-||+|..|++-.+.+--|.|+|.|...|+-|+..|+|..+.|++|+|.+++...-.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 68899999964 58999999999999999999986566689999999999999999999999999999999998754211
Q ss_pred ------CC--------------------cc-----cCCcceEEecccCCCcHHHHHHHhcccCcE-EEEEeCCCCccEEE
Q 002974 356 ------SE--------------------KD-----ANQGTLVVFNLDSSVSTEELHQIFGIYGEI-REIRDTQHKHNHKF 403 (861)
Q Consensus 356 ------~~--------------------k~-----~~~~tLfVgNLp~svTeedLrelFskfGeI-~sVritgksKGfAF 403 (861)
.+ +. ....+|...|+|.++++|+|+.+|..-|-. +-.+..++.+.+|+
T Consensus 377 lp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal 456 (492)
T KOG1190|consen 377 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMAL 456 (492)
T ss_pred CCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceee
Confidence 00 00 124589999999999999999999998755 55666777889999
Q ss_pred EEECCHHHHHHHHHHhCCCeeCC-cEEEEEeccC
Q 002974 404 IEFYDIRAAETALRTLNRSDVAG-KQIKLEASRP 436 (861)
Q Consensus 404 VeF~d~eaA~kAL~~LNG~~I~G-r~IkVe~Akp 436 (861)
+++.+.|+|..|+-.++...+++ ..|+|.+++.
T Consensus 457 ~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 457 PQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred cccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 99999999999999999999975 5999999875
No 51
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.31 E-value=2.9e-11 Score=133.34 Aligned_cols=160 Identities=21% Similarity=0.376 Sum_probs=132.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhh-cCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecC
Q 002974 276 PSRTLFVRNINSNVEDSELKALFE-QFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (861)
Q Consensus 276 ~srtLfVgNLP~~vTEedL~elFs-qfG~I~svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~ 350 (861)
-.|.+||.|||+++.-.+|++||. +.|+|..|.+ .+|.||||.|+|+++|.+++|++.||...+.||+|.|+-..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 356799999999999999999997 6899999984 79999999999999999999999999999999999985321
Q ss_pred CC---------------------------------------------CCCCC--c-------------------------
Q 002974 351 PK---------------------------------------------DNPSE--K------------------------- 358 (861)
Q Consensus 351 ~k---------------------------------------------~~~~~--k------------------------- 358 (861)
.. .+.+. .
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 10 00000 0
Q ss_pred ---------ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCCeeC
Q 002974 359 ---------DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD----TQHKHNHKFIEFYDIRAAETALRTLNRSDVA 425 (861)
Q Consensus 359 ---------~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~ 425 (861)
.....++||.||.+.+..+.|++.|.-.|+|+.|.. .+.++|||.|+|..+-+|..||..|++.-+.
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~ 282 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLF 282 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCc
Confidence 001358999999999999999999999999988753 4678999999999999999999999987777
Q ss_pred CcEEEEEecc
Q 002974 426 GKQIKLEASR 435 (861)
Q Consensus 426 Gr~IkVe~Ak 435 (861)
.++..+....
T Consensus 283 ~~~~~~Rl~~ 292 (608)
T KOG4212|consen 283 DRRMTVRLDR 292 (608)
T ss_pred cccceeeccc
Confidence 7777766543
No 52
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.31 E-value=7.7e-12 Score=105.19 Aligned_cols=66 Identities=35% Similarity=0.548 Sum_probs=61.5
Q ss_pred eEEecccCCCcHHHHHHHhcccCcEEEEEeC----CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Q 002974 365 LVVFNLDSSVSTEELHQIFGIYGEIREIRDT----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIK 430 (861)
Q Consensus 365 LfVgNLp~svTeedLrelFskfGeI~sVrit----gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~Ik 430 (861)
|||+|||..+++++|+++|++||.|..+.+. +..+++|||+|.+.++|++|++.|+|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999988763 45689999999999999999999999999999986
No 53
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.31 E-value=1.5e-11 Score=125.56 Aligned_cols=118 Identities=29% Similarity=0.459 Sum_probs=102.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCC
Q 002974 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (861)
Q Consensus 277 srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~ 351 (861)
.++|||+|||.++++++|+++|.+||.|..+.+ +++++|||||+|.+.++|..|++.+++..|.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 699999999999999999999999999988764 589999999999999999999999999999999999999542
Q ss_pred ----CCCCC----------------CcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe
Q 002974 352 ----KDNPS----------------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD 394 (861)
Q Consensus 352 ----k~~~~----------------~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri 394 (861)
+.... ........+++.+++..++..++...|..+|.+..+.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASL 257 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeec
Confidence 22211 01123568999999999999999999999999977665
No 54
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=8.4e-12 Score=124.26 Aligned_cols=79 Identities=23% Similarity=0.488 Sum_probs=74.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCCCC
Q 002974 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 354 (861)
Q Consensus 276 ~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k~~ 354 (861)
-.++|||+||+..+++.||..+|..||.|..|++.....|||||+|+++.+|+.|+..|+|+.|.|..|+|+.+.-+..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999875433
No 55
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.24 E-value=6.9e-11 Score=132.67 Aligned_cols=160 Identities=16% Similarity=0.259 Sum_probs=127.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE---eCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCC
Q 002974 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIY---TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (861)
Q Consensus 276 ~srtLfVgNLP~~vTEedL~elFsqfG~I~svk---itgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k 352 (861)
...-|-+++||+++|++||.++|+.|+ |+.+. .+++..|-|||+|.+.+++++|++ ++...+..|-|.|--+..+
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCc
Confidence 355677899999999999999999998 44444 468999999999999999999997 7888888898988666544
Q ss_pred CCC-------CCcccCCcceEEecccCCCcHHHHHHHhcccCcEEE-EEe----CCCCccEEEEEECCHHHHHHHHHHhC
Q 002974 353 DNP-------SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE-IRD----TQHKHNHKFIEFYDIRAAETALRTLN 420 (861)
Q Consensus 353 ~~~-------~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~s-Vri----tgksKGfAFVeF~d~eaA~kAL~~LN 420 (861)
+.. .....+...|-+++||+.||++||.++|+..-.|.. |.+ -+++.|-|||+|++.+.|++||. -|
T Consensus 87 e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rh 165 (510)
T KOG4211|consen 87 EADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RH 165 (510)
T ss_pred cccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HH
Confidence 321 111245678999999999999999999998654444 322 34567899999999999999999 47
Q ss_pred CCeeCCcEEEEEeccCCc
Q 002974 421 RSDVAGKQIKLEASRPGG 438 (861)
Q Consensus 421 G~~I~Gr~IkVe~Akpk~ 438 (861)
...|.-|-|.|-.+...+
T Consensus 166 re~iGhRYIEvF~Ss~~e 183 (510)
T KOG4211|consen 166 RENIGHRYIEVFRSSRAE 183 (510)
T ss_pred HHhhccceEEeehhHHHH
Confidence 778888999997765443
No 56
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.22 E-value=4.8e-12 Score=126.63 Aligned_cols=161 Identities=20% Similarity=0.266 Sum_probs=121.7
Q ss_pred HHhcCCCCCc-chhhhccccccCCCCCCCCCCCcccccccccCCcc---ccccCcchhhhccCCCcCCCccCCCCCCCcc
Q 002974 191 QTIGNLLPDE-DDLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGM---ELEGDDRLFAVQKNSDFVGGVSNQGVSAGSV 266 (861)
Q Consensus 191 q~IGnLlpdd-DdLlagv~d~~g~~~~~~~~dD~ee~Dvf~s~GGm---Ele~d~~~s~~~s~s~~~gg~~~~~~~ng~~ 266 (861)
-++|||++.. +++|++++-+.+.+-....++|. +.....|+ |+.+.+..+.+.++..+-...+.. .....
T Consensus 12 iyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDr----v~~~~qGygF~Ef~~eedadYAikiln~VkLYgrp--Irv~k 85 (203)
T KOG0131|consen 12 LYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDR----VTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRP--IRVNK 85 (203)
T ss_pred EEEecCCHHHHHHHHHHHHHhcCceeeeecchhh----hcccccceeEEEEechhhhHHHHHHHHHHHhcCce--eEEEe
Confidence 4699999988 99999999999999999998884 44555555 554444333333322222222222 22222
Q ss_pred cCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE------eCCCcccEEEEEeCCHHHHHHHHHHcCccccC
Q 002974 267 VGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY------TACKHRGFVMISYYDIRAARNAMKALQNKPLR 340 (861)
Q Consensus 267 ~Ge~~~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svk------itgksrGyAFVeF~d~e~A~kALkaLnG~~L~ 340 (861)
++.......-..+|||+||.+.++|..|.++|+.||.|...- .+++++|||||.|.+.+++++|++.++|+.+.
T Consensus 86 as~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~ 165 (203)
T KOG0131|consen 86 ASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLC 165 (203)
T ss_pred cccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhc
Confidence 333344555679999999999999999999999999876631 47899999999999999999999999999999
Q ss_pred cceeeeeecCCCCCCCC
Q 002974 341 RRKLDIHYSIPKDNPSE 357 (861)
Q Consensus 341 Gr~L~V~~a~~k~~~~~ 357 (861)
.+++.|.|+..++...+
T Consensus 166 nr~itv~ya~k~~~kg~ 182 (203)
T KOG0131|consen 166 NRPITVSYAFKKDTKGE 182 (203)
T ss_pred CCceEEEEEEecCCCcc
Confidence 99999999987766543
No 57
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=2e-11 Score=116.16 Aligned_cols=78 Identities=26% Similarity=0.458 Sum_probs=72.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
.+.++||||+||+..++|++|.+||++||+|+.|.+ +....|||||+|.+.++|..|++.++|+.|..+.|+|.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 456999999999999999999999999999999974 677889999999999999999999999999999999988
Q ss_pred cCC
Q 002974 349 SIP 351 (861)
Q Consensus 349 a~~ 351 (861)
...
T Consensus 113 D~G 115 (153)
T KOG0121|consen 113 DAG 115 (153)
T ss_pred ccc
Confidence 743
No 58
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=7.2e-11 Score=126.94 Aligned_cols=82 Identities=22% Similarity=0.412 Sum_probs=75.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeec
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki---tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a 349 (861)
.....++|+|.|||+...|-||+.+|++||+|.+|.| ...+|||+||+|++.++|++|.++|+|..+.||+|.|+.+
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 3445789999999999999999999999999999985 5779999999999999999999999999999999999999
Q ss_pred CCCCC
Q 002974 350 IPKDN 354 (861)
Q Consensus 350 ~~k~~ 354 (861)
..+-.
T Consensus 172 TarV~ 176 (376)
T KOG0125|consen 172 TARVH 176 (376)
T ss_pred chhhc
Confidence 87643
No 59
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=3e-11 Score=120.37 Aligned_cols=78 Identities=32% Similarity=0.491 Sum_probs=72.9
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~ 438 (861)
..++|||+||+..+++.||..+|.+||.|..|-+.-...|||||+|+|+.+|+.|+..|+|+.|.|..|+|+++.-..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 367999999999999999999999999999988777889999999999999999999999999999999999987554
No 60
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=1.5e-10 Score=132.62 Aligned_cols=165 Identities=17% Similarity=0.329 Sum_probs=130.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~ 347 (861)
.....+.+||++||..+++.+++++...||.++.... ++.++||||.+|.++.....|+..|||+.+.+++|.|+
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 3455789999999999999999999999999887762 57899999999999999999999999999999999999
Q ss_pred ecCCCCCCCCcc--------------------cCCcceEEeccc--CCC-cH-------HHHHHHhcccCcEEEEEeCCC
Q 002974 348 YSIPKDNPSEKD--------------------ANQGTLVVFNLD--SSV-ST-------EELHQIFGIYGEIREIRDTQH 397 (861)
Q Consensus 348 ~a~~k~~~~~k~--------------------~~~~tLfVgNLp--~sv-Te-------edLrelFskfGeI~sVritgk 397 (861)
.+.......... .....|...|+= .++ ++ |+++..+++||.|..|.+...
T Consensus 365 ~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~ 444 (500)
T KOG0120|consen 365 RAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRP 444 (500)
T ss_pred hhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCC
Confidence 887643321111 112233333331 111 11 567788899999999986321
Q ss_pred --------CccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 002974 398 --------KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (861)
Q Consensus 398 --------sKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk 437 (861)
..|..||+|.+.++|++|.++|+|..++||.|...|....
T Consensus 445 ~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 445 YPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred CCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 2567999999999999999999999999999999988643
No 61
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.15 E-value=1.3e-10 Score=123.55 Aligned_cols=76 Identities=18% Similarity=0.291 Sum_probs=69.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe--CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCCC
Q 002974 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKD 353 (861)
Q Consensus 277 srtLfVgNLP~~vTEedL~elFsqfG~I~svki--tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k~ 353 (861)
.++|||+|||+.++|++|+++|+.||+|.+|++ .+..+|||||+|.+.++|+.|+. |+|..|.|+.|.|.++....
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDYQ 81 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCCC
Confidence 689999999999999999999999999999996 33468999999999999999995 99999999999999986543
No 62
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=1.5e-10 Score=106.70 Aligned_cols=81 Identities=30% Similarity=0.488 Sum_probs=75.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe--CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecC
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki--tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~ 350 (861)
+....+.|||+|||.++|.++..++|.+||.|+.|++ +...+|-|||.|++..+|.+|++.|.|..+.++.|.|.|..
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 4556899999999999999999999999999999996 67889999999999999999999999999999999999987
Q ss_pred CCC
Q 002974 351 PKD 353 (861)
Q Consensus 351 ~k~ 353 (861)
+.+
T Consensus 94 ~~~ 96 (124)
T KOG0114|consen 94 PED 96 (124)
T ss_pred HHH
Confidence 643
No 63
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.14 E-value=1.5e-10 Score=98.70 Aligned_cols=66 Identities=23% Similarity=0.560 Sum_probs=59.0
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceee
Q 002974 280 LFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (861)
Q Consensus 280 LfVgNLP~~vTEedL~elFsqfG~I~svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~ 345 (861)
|||+|||+++++++|+++|+.||.|..+++ .+..+++|||+|.+.++|++|++.+++..++|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999985 245689999999999999999999999999999874
No 64
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=1.2e-10 Score=125.16 Aligned_cols=98 Identities=15% Similarity=0.270 Sum_probs=79.4
Q ss_pred ccccCcceeeeeecCCCCCCCCcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe---CCCCccEEEEEECCHHHH
Q 002974 336 NKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD---TQHKHNHKFIEFYDIRAA 412 (861)
Q Consensus 336 G~~L~Gr~L~V~~a~~k~~~~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri---tgksKGfAFVeF~d~eaA 412 (861)
+-...|..+.+...... ......++|+|.|||+...|-||+.+|.+||+|.+|.| ...+||||||+|++.++|
T Consensus 74 ~~~t~g~~~~~~~st~s----~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~da 149 (376)
T KOG0125|consen 74 GAPTDGQPIQTQPSTNS----SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADA 149 (376)
T ss_pred CCCCCCCccccCCCCcC----CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhH
Confidence 33444555554433221 22234578999999999999999999999999999987 345799999999999999
Q ss_pred HHHHHHhCCCeeCCcEEEEEeccCC
Q 002974 413 ETALRTLNRSDVAGKQIKLEASRPG 437 (861)
Q Consensus 413 ~kAL~~LNG~~I~Gr~IkVe~Akpk 437 (861)
++|-++|||..|.||+|.|..+..+
T Consensus 150 dRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 150 DRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred HHHHHHhhcceeeceEEEEeccchh
Confidence 9999999999999999999998765
No 65
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.12 E-value=1.9e-10 Score=122.40 Aligned_cols=75 Identities=19% Similarity=0.346 Sum_probs=68.7
Q ss_pred CcceEEecccCCCcHHHHHHHhcccCcEEEEEeCC--CCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 002974 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ--HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (861)
Q Consensus 362 ~~tLfVgNLp~svTeedLrelFskfGeI~sVritg--ksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk 437 (861)
.++|||+||++.+++++|+++|+.||+|++|++.. ..+|||||+|.+.++|+.||. |+|..|.|+.|+|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 46899999999999999999999999999998743 357999999999999999996 9999999999999998743
No 66
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.11 E-value=8.1e-10 Score=120.30 Aligned_cols=167 Identities=21% Similarity=0.325 Sum_probs=135.9
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHH--cCccccCcceeeeee
Q 002974 271 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKA--LQNKPLRRRKLDIHY 348 (861)
Q Consensus 271 ~~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALka--LnG~~L~Gr~L~V~~ 348 (861)
+-...++-.|.|++|-..++|.||.+..+.||.|..+.. ...+..|.|+|+|++.|++|+.. -+...+.|+.--++|
T Consensus 25 phk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~-~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~Ny 103 (494)
T KOG1456|consen 25 PHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTC-MPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNY 103 (494)
T ss_pred CCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEe-ccccceeeeeeccccchhhheehhccCcccccCchhhccc
Confidence 445667889999999999999999999999999998876 56677999999999999999853 344557788888888
Q ss_pred cCCCCCC---CCcccCCcceEEecc--cCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCe
Q 002974 349 SIPKDNP---SEKDANQGTLVVFNL--DSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSD 423 (861)
Q Consensus 349 a~~k~~~---~~k~~~~~tLfVgNL--p~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~ 423 (861)
+..+.-. .+....+..|.+.=| -+.+|-+.|..++...|+|.+|.+..+..--|.|||++.+.|++|..+|||.+
T Consensus 104 Stsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGAD 183 (494)
T KOG1456|consen 104 STSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGAD 183 (494)
T ss_pred chhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhccccc
Confidence 8554322 122233445555544 46789999999999999999999876644469999999999999999999999
Q ss_pred eC-C-cEEEEEeccCCc
Q 002974 424 VA-G-KQIKLEASRPGG 438 (861)
Q Consensus 424 I~-G-r~IkVe~Akpk~ 438 (861)
|+ | ++|+|++|+|..
T Consensus 184 IYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 184 IYSGCCTLKIEYAKPTR 200 (494)
T ss_pred ccccceeEEEEecCcce
Confidence 86 3 899999999975
No 67
>PLN03213 repressor of silencing 3; Provisional
Probab=99.10 E-value=1.2e-10 Score=129.92 Aligned_cols=78 Identities=14% Similarity=0.240 Sum_probs=69.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-CCCcccEEEEEeCCH--HHHHHHHHHcCccccCcceeeeeecCC
Q 002974 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-ACKHRGFVMISYYDI--RAARNAMKALQNKPLRRRKLDIHYSIP 351 (861)
Q Consensus 275 ~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-tgksrGyAFVeF~d~--e~A~kALkaLnG~~L~Gr~L~V~~a~~ 351 (861)
....+||||||++.+++++|+.+|..||.|..|.+ ....||||||+|.+. .++++||..|||..+.||.|+|+.|++
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 34689999999999999999999999999999985 222399999999987 789999999999999999999998876
Q ss_pred C
Q 002974 352 K 352 (861)
Q Consensus 352 k 352 (861)
.
T Consensus 88 ~ 88 (759)
T PLN03213 88 H 88 (759)
T ss_pred H
Confidence 4
No 68
>PLN03213 repressor of silencing 3; Provisional
Probab=99.09 E-value=4.4e-10 Score=125.51 Aligned_cols=84 Identities=20% Similarity=0.277 Sum_probs=73.2
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC-CCCccEEEEEECCH--HHHHHHHHHhCCCeeCCcEEEEEeccC
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-QHKHNHKFIEFYDI--RAAETALRTLNRSDVAGKQIKLEASRP 436 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit-gksKGfAFVeF~d~--eaA~kAL~~LNG~~I~Gr~IkVe~Akp 436 (861)
....+||||||++.+++++|+..|+.||.|..|.+. ...||||||+|.+. .++.+||..|||..+.|+.|+|..|++
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 345789999999999999999999999999998763 12389999999977 789999999999999999999999998
Q ss_pred Cchhhhc
Q 002974 437 GGARRFM 443 (861)
Q Consensus 437 k~~rrl~ 443 (861)
.=..|+.
T Consensus 88 ~YLeRLk 94 (759)
T PLN03213 88 HYLARLK 94 (759)
T ss_pred HHHHHHH
Confidence 7544433
No 69
>smart00362 RRM_2 RNA recognition motif.
Probab=99.09 E-value=4.3e-10 Score=92.90 Aligned_cols=69 Identities=30% Similarity=0.571 Sum_probs=63.1
Q ss_pred ceEEecccCCCcHHHHHHHhcccCcEEEEEeCCC---CccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 002974 364 TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH---KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (861)
Q Consensus 364 tLfVgNLp~svTeedLrelFskfGeI~sVritgk---sKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe 432 (861)
+|||+|||..+++++|+++|.+||.|..+++... .+++|||+|.+.++|++|++.+++..+.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999999999999876433 47999999999999999999999999999999873
No 70
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.08 E-value=3.5e-10 Score=96.36 Aligned_cols=66 Identities=26% Similarity=0.538 Sum_probs=58.8
Q ss_pred eEEecccCCCcHHHHHHHhcccCcEEEEEeCC----CCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Q 002974 365 LVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIK 430 (861)
Q Consensus 365 LfVgNLp~svTeedLrelFskfGeI~sVritg----ksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~Ik 430 (861)
|||+|||+.+++++|+++|+.||.|..+++.. ..+++|||+|.+.++|.+|++.+++..+.|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999988643 3479999999999999999999999999999985
No 71
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.08 E-value=5.6e-10 Score=103.01 Aligned_cols=81 Identities=28% Similarity=0.422 Sum_probs=75.0
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEEEe--CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD--TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sVri--tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~ 438 (861)
-.+.|||.|||+++|.|+..++|.+||.|..|++ +..-+|-|||.|++..+|++|++.|+|..+.++.+.|-+..+..
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPED 96 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHH
Confidence 4578999999999999999999999999999997 55668999999999999999999999999999999999999877
Q ss_pred hhh
Q 002974 439 ARR 441 (861)
Q Consensus 439 ~rr 441 (861)
+.+
T Consensus 97 ~~~ 99 (124)
T KOG0114|consen 97 AFK 99 (124)
T ss_pred HHH
Confidence 655
No 72
>smart00362 RRM_2 RNA recognition motif.
Probab=99.07 E-value=5.2e-10 Score=92.38 Aligned_cols=69 Identities=33% Similarity=0.605 Sum_probs=63.0
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeC---CCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeee
Q 002974 279 TLFVRNINSNVEDSELKALFEQFGDIRTIYTA---CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (861)
Q Consensus 279 tLfVgNLP~~vTEedL~elFsqfG~I~svkit---gksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~ 347 (861)
+|||+|||..+++++|+++|.+||.|..+++. +.++|+|||+|.+.++|++|++.+++..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999998863 3457999999999999999999999999999998873
No 73
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.05 E-value=2.7e-10 Score=120.96 Aligned_cols=106 Identities=24% Similarity=0.293 Sum_probs=91.6
Q ss_pred cceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCchhhh
Q 002974 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRF 442 (861)
Q Consensus 363 ~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~~rrl 442 (861)
.+|||+|||..+++.+|+.+|++||+|.+|.|+ |+||||..+|..+|+.||+.|||..|.|..|.|+.++.|....
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv---KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~s- 78 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV---KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKAS- 78 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee---cccceEEeecccccHHHHhhcccceecceEEEEEeccccCCCc-
Confidence 369999999999999999999999999999986 6899999999999999999999999999999999999884322
Q ss_pred chhhhhhhccccCC-CCCCCCCCcccc----CCcccEEEEeCCCC
Q 002974 443 MVQSEQEQDDLNLC-QIPFDDLSSGQM----VSSGVITSTCMDNG 482 (861)
Q Consensus 443 ~qq~eq~q~E~~vg-kNLp~s~tee~L----s~fG~I~Sv~~enG 482 (861)
..++ .|+.+..+..+| .+||.|..|...++
T Consensus 79 ----------tkl~vgNis~tctn~ElRa~fe~ygpviecdivkd 113 (346)
T KOG0109|consen 79 ----------TKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD 113 (346)
T ss_pred ----------cccccCCCCccccCHHHhhhhcccCCceeeeeecc
Confidence 1223 678888887777 89998888875544
No 74
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.05 E-value=2.5e-10 Score=116.32 Aligned_cols=80 Identities=25% Similarity=0.500 Sum_probs=75.0
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceee
Q 002974 271 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (861)
Q Consensus 271 ~~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~ 345 (861)
+.+.....+|.|-||...++.++|+.+|++||.|-+|+| |..++|||||.|.+..+|+.|+++|+|.+|.|+.|+
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 456667889999999999999999999999999999986 789999999999999999999999999999999999
Q ss_pred eeecC
Q 002974 346 IHYSI 350 (861)
Q Consensus 346 V~~a~ 350 (861)
|++|.
T Consensus 87 Vq~ar 91 (256)
T KOG4207|consen 87 VQMAR 91 (256)
T ss_pred ehhhh
Confidence 99885
No 75
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=4.4e-10 Score=117.10 Aligned_cols=77 Identities=23% Similarity=0.380 Sum_probs=72.8
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Ak 435 (861)
...+|-|.||+.++++++|+++|.+||.|..|.+ ++.+||||||.|++.++|++||+.|||.-++.-.|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 4568999999999999999999999999999854 78899999999999999999999999999999999999999
Q ss_pred CC
Q 002974 436 PG 437 (861)
Q Consensus 436 pk 437 (861)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 86
No 76
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=5.8e-10 Score=116.24 Aligned_cols=79 Identities=23% Similarity=0.447 Sum_probs=74.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
-.++++|-|.||+.+++|.+|++||..||.|..|++ |+.+||||||.|.+.++|++||+.|+|.-+..--|+|.|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 347899999999999999999999999999999984 899999999999999999999999999999999999999
Q ss_pred cCCC
Q 002974 349 SIPK 352 (861)
Q Consensus 349 a~~k 352 (861)
++|+
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9885
No 77
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.03 E-value=2.9e-10 Score=118.04 Aligned_cols=80 Identities=25% Similarity=0.329 Sum_probs=69.8
Q ss_pred cccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 002974 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (861)
Q Consensus 358 k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe 432 (861)
.|...++|||++|++.+..|+|++.|++||+|++..+ ++++|||+||+|+|.++|.+|++. -.-.|+||+..|.
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcn 86 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCN 86 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccc
Confidence 3455689999999999999999999999999999654 788999999999999999999994 3347899999999
Q ss_pred eccCCc
Q 002974 433 ASRPGG 438 (861)
Q Consensus 433 ~Akpk~ 438 (861)
+|--+.
T Consensus 87 lA~lg~ 92 (247)
T KOG0149|consen 87 LASLGG 92 (247)
T ss_pred hhhhcC
Confidence 887644
No 78
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=7e-10 Score=118.23 Aligned_cols=79 Identities=27% Similarity=0.457 Sum_probs=74.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY-----TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svk-----itgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~ 347 (861)
...|-+||||+-|+.+++|..|+..|+.||+|+.|. ++++++|||||+|++..+...|.+..+|+.|.|+.|.|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 347899999999999999999999999999999987 489999999999999999999999999999999999998
Q ss_pred ecCC
Q 002974 348 YSIP 351 (861)
Q Consensus 348 ~a~~ 351 (861)
+...
T Consensus 177 vERg 180 (335)
T KOG0113|consen 177 VERG 180 (335)
T ss_pred eccc
Confidence 8754
No 79
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.01 E-value=1.2e-09 Score=89.87 Aligned_cols=56 Identities=27% Similarity=0.569 Sum_probs=51.5
Q ss_pred HHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 002974 379 LHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (861)
Q Consensus 379 LrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~A 434 (861)
|+++|++||+|+.|.+..+.+++|||+|.+.++|++|++.|||..+.|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999986655799999999999999999999999999999999986
No 80
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=6e-10 Score=106.24 Aligned_cols=75 Identities=25% Similarity=0.402 Sum_probs=68.6
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Ak 435 (861)
...+|||+||...++||+|.++|+++|+|+.|-+ +....|||||+|...++|+.|++-++|..+..+.|++.|.-
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 4679999999999999999999999999999854 44567999999999999999999999999999999999854
No 81
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.99 E-value=7.6e-10 Score=114.94 Aligned_cols=78 Identities=24% Similarity=0.408 Sum_probs=68.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~ 347 (861)
.+..-++||||+|++.+..++|++.|++||+|++..+ ++++|||+||.|.|.++|.+|++ --+-.|+||+-.++
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcn 86 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCN 86 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccc
Confidence 4455789999999999999999999999999998763 79999999999999999999997 34466899998888
Q ss_pred ecCC
Q 002974 348 YSIP 351 (861)
Q Consensus 348 ~a~~ 351 (861)
.+.-
T Consensus 87 lA~l 90 (247)
T KOG0149|consen 87 LASL 90 (247)
T ss_pred hhhh
Confidence 7754
No 82
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.97 E-value=5.9e-10 Score=126.92 Aligned_cols=161 Identities=24% Similarity=0.356 Sum_probs=128.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCCC
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKD 353 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k~ 353 (861)
..+.++|+|-|||..|++++|+.+|+.||+|+.|+.+...+|.+||+|.|+++|++|+++|++..+.|+.|+........
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~~ 151 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARRA 151 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCccccc
Confidence 56799999999999999999999999999999999999999999999999999999999999999999998832221110
Q ss_pred CC------------------CCcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHH
Q 002974 354 NP------------------SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETA 415 (861)
Q Consensus 354 ~~------------------~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kA 415 (861)
.. ....-....+++- |++..+..-++.+|+.+|.+.. +.++..+.--|++|.+..++..+
T Consensus 152 ~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~hq~~~~~~~~~s~a~~ 229 (549)
T KOG4660|consen 152 MGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RETPLLNHQRFVEFADNRSYAFS 229 (549)
T ss_pred chhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-ccccchhhhhhhhhccccchhhc
Confidence 00 0001113344444 9998888888899999999988 87777777889999999999777
Q ss_pred HHHhCCCeeCCcEEEEEeccCC
Q 002974 416 LRTLNRSDVAGKQIKLEASRPG 437 (861)
Q Consensus 416 L~~LNG~~I~Gr~IkVe~Akpk 437 (861)
+... |..+.+....+.++.+.
T Consensus 230 ~~~~-G~~~s~~~~v~t~S~~~ 250 (549)
T KOG4660|consen 230 EPRG-GFLISNSSGVITFSGPG 250 (549)
T ss_pred ccCC-ceecCCCCceEEecCCC
Confidence 6644 66667777666666663
No 83
>smart00360 RRM RNA recognition motif.
Probab=98.97 E-value=1.9e-09 Score=88.57 Aligned_cols=66 Identities=32% Similarity=0.598 Sum_probs=60.3
Q ss_pred EcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeee
Q 002974 282 VRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (861)
Q Consensus 282 VgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~ 347 (861)
|+|||..+++++|+++|++||.|..+++ +++++|||||+|.+.++|.+|++.+++..+.|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6899999999999999999999999885 35568999999999999999999999999999998873
No 84
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.96 E-value=2.4e-09 Score=112.62 Aligned_cols=75 Identities=15% Similarity=0.181 Sum_probs=68.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe--CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCC
Q 002974 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (861)
Q Consensus 276 ~srtLfVgNLP~~vTEedL~elFsqfG~I~svki--tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~ 351 (861)
...+|||+||++.+|+++|+++|+.||+|..|++ .++.++||||+|+++++|+.|+ .|+|..|.++.|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCcc
Confidence 3579999999999999999999999999999986 4567789999999999999999 5999999999999987653
No 85
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.96 E-value=3.6e-09 Score=87.84 Aligned_cols=70 Identities=33% Similarity=0.594 Sum_probs=64.1
Q ss_pred ceEEecccCCCcHHHHHHHhcccCcEEEEEeCCC----CccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 364 TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 364 tLfVgNLp~svTeedLrelFskfGeI~sVritgk----sKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
+|+|+|||..+++++|+++|+.||.|..+.+... .+++|||+|.+.++|..|++.+++..+.|++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999886433 379999999999999999999999999999999864
No 86
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.94 E-value=7.8e-10 Score=112.74 Aligned_cols=77 Identities=27% Similarity=0.511 Sum_probs=71.5
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Ak 435 (861)
.-.+|-|-||.+-++.++|+.+|++||.|-+|.| +.+++|||||.|.+..+|+.|+++|+|..+.|+.|+|++|+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 3468999999999999999999999999999876 67789999999999999999999999999999999999887
Q ss_pred CC
Q 002974 436 PG 437 (861)
Q Consensus 436 pk 437 (861)
=.
T Consensus 92 yg 93 (256)
T KOG4207|consen 92 YG 93 (256)
T ss_pred cC
Confidence 54
No 87
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.94 E-value=3.3e-09 Score=88.02 Aligned_cols=70 Identities=33% Similarity=0.656 Sum_probs=63.9
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCC----CcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 279 TLFVRNINSNVEDSELKALFEQFGDIRTIYTAC----KHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 279 tLfVgNLP~~vTEedL~elFsqfG~I~svkitg----ksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
+|+|+|||..+++++|+++|+.||.|..+.+.. ..+|+|||+|.+.++|+.|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 589999999999999999999999999988632 3489999999999999999999999999999998864
No 88
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.93 E-value=2.9e-09 Score=112.09 Aligned_cols=74 Identities=19% Similarity=0.245 Sum_probs=67.6
Q ss_pred CcceEEecccCCCcHHHHHHHhcccCcEEEEEeC--CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 002974 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT--QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (861)
Q Consensus 362 ~~tLfVgNLp~svTeedLrelFskfGeI~sVrit--gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akp 436 (861)
..+|||+||++.+|+++|+++|+.||+|.+|++. ++.++||||+|+++++|+.|+. |+|..|.+++|.|..+..
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 4689999999999999999999999999999874 3456899999999999999996 999999999999998764
No 89
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.93 E-value=3.4e-09 Score=113.11 Aligned_cols=92 Identities=25% Similarity=0.395 Sum_probs=79.6
Q ss_pred CCCCCCCCcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCee
Q 002974 350 IPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDV 424 (861)
Q Consensus 350 ~~k~~~~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I 424 (861)
.|..++......-+||||+-|+++++|.+|+..|++||.|+.|++ +++++|||||+|+++.+..+|.+..+|..|
T Consensus 89 dP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~I 168 (335)
T KOG0113|consen 89 DPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKI 168 (335)
T ss_pred CCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCcee
Confidence 344444444566789999999999999999999999999999864 789999999999999999999999999999
Q ss_pred CCcEEEEEeccCCchhh
Q 002974 425 AGKQIKLEASRPGGARR 441 (861)
Q Consensus 425 ~Gr~IkVe~Akpk~~rr 441 (861)
+|+.|.|.+-..+..+.
T Consensus 169 dgrri~VDvERgRTvkg 185 (335)
T KOG0113|consen 169 DGRRILVDVERGRTVKG 185 (335)
T ss_pred cCcEEEEEecccccccc
Confidence 99999999887665433
No 90
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.93 E-value=1.6e-08 Score=112.02 Aligned_cols=70 Identities=20% Similarity=0.265 Sum_probs=64.2
Q ss_pred cceEEecccCCCcHHHHHHHhcccCcEEEEEe--CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 002974 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRD--TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (861)
Q Consensus 363 ~tLfVgNLp~svTeedLrelFskfGeI~sVri--tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~A 434 (861)
++|+|+|||.++|++.|++-|..||.|..+.+ .++++| .|.|.++++|++|+..|+|..+.||.|+|.+.
T Consensus 537 ~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 537 CQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 58999999999999999999999999999887 455554 99999999999999999999999999999874
No 91
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.91 E-value=3.1e-09 Score=87.45 Aligned_cols=56 Identities=29% Similarity=0.632 Sum_probs=50.8
Q ss_pred HHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeec
Q 002974 294 LKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (861)
Q Consensus 294 L~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a 349 (861)
|+++|++||+|..+.+..+.+++|||+|.+.++|++|++.|||..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999974444799999999999999999999999999999999986
No 92
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.90 E-value=4.4e-09 Score=107.40 Aligned_cols=75 Identities=29% Similarity=0.568 Sum_probs=70.1
Q ss_pred CcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 002974 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (861)
Q Consensus 362 ~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akp 436 (861)
..+|||+||+..+++++|+++|.+||.|..|.+ ++..+|||||+|.+.++|..|++.+++..|.|++|+|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 589999999999999999999999999988764 467899999999999999999999999999999999999764
No 93
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=1.8e-09 Score=108.57 Aligned_cols=78 Identities=32% Similarity=0.451 Sum_probs=70.8
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC--CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT--QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit--gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~ 438 (861)
+.++|||+|||.++-+.+|.++|.+||.|.+|.+. .....||||+|++..+|+.||..-+|..+.|++|+|+++....
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr 84 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGR 84 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCC
Confidence 56799999999999999999999999999998763 3335799999999999999999999999999999999998653
No 94
>smart00360 RRM RNA recognition motif.
Probab=98.90 E-value=3.9e-09 Score=86.68 Aligned_cols=66 Identities=33% Similarity=0.570 Sum_probs=59.6
Q ss_pred EecccCCCcHHHHHHHhcccCcEEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 002974 367 VFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (861)
Q Consensus 367 VgNLp~svTeedLrelFskfGeI~sVrit-----gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe 432 (861)
|+|||..+++++|+++|++||.|..+.+. +..+++|||+|.+.++|.+|++.+++..+.|++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999998763 3347899999999999999999999999999999873
No 95
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.2e-09 Score=112.10 Aligned_cols=80 Identities=29% Similarity=0.520 Sum_probs=75.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeec
Q 002974 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (861)
Q Consensus 275 ~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a 349 (861)
...|+||||+|..+|+|.-|...|-.||+|..|.+ +.++||||||+|.-.++|.+||..||+..|.||.|+|+++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 34799999999999999999999999999999985 6899999999999999999999999999999999999999
Q ss_pred CCCCC
Q 002974 350 IPKDN 354 (861)
Q Consensus 350 ~~k~~ 354 (861)
.|..-
T Consensus 88 kP~ki 92 (298)
T KOG0111|consen 88 KPEKI 92 (298)
T ss_pred CCccc
Confidence 88644
No 96
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.1e-09 Score=112.45 Aligned_cols=81 Identities=27% Similarity=0.505 Sum_probs=74.7
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Ak 435 (861)
..++|||++|..++++.-|...|-+||.|+.|.+ ..+.||||||+|.-.|+|.+||..||+.++.||.|+|.+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 4689999999999999999999999999999975 46779999999999999999999999999999999999999
Q ss_pred CCchhh
Q 002974 436 PGGARR 441 (861)
Q Consensus 436 pk~~rr 441 (861)
|...+.
T Consensus 89 P~kike 94 (298)
T KOG0111|consen 89 PEKIKE 94 (298)
T ss_pred CccccC
Confidence 976443
No 97
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.82 E-value=6.5e-10 Score=111.48 Aligned_cols=76 Identities=20% Similarity=0.406 Sum_probs=71.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeec
Q 002974 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (861)
Q Consensus 275 ~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a 349 (861)
.++.-|||||||.+.||.||..+|++||+|+.|.+ |++++||||+.|+|.++..-|+..|||..|.||.|+|.-.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 45889999999999999999999999999999874 8999999999999999999999999999999999999754
Q ss_pred C
Q 002974 350 I 350 (861)
Q Consensus 350 ~ 350 (861)
.
T Consensus 113 ~ 113 (219)
T KOG0126|consen 113 S 113 (219)
T ss_pred c
Confidence 3
No 98
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.81 E-value=6.3e-09 Score=118.62 Aligned_cols=77 Identities=25% Similarity=0.450 Sum_probs=73.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCC
Q 002974 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (861)
Q Consensus 278 rtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k 352 (861)
+.|||||||++++|++|..+|+..|.|.++++ +++.|||||++|.+.++|.+|++.|||..+.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999984 8999999999999999999999999999999999999999765
Q ss_pred CC
Q 002974 353 DN 354 (861)
Q Consensus 353 ~~ 354 (861)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 99
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.80 E-value=2.6e-09 Score=126.64 Aligned_cols=160 Identities=20% Similarity=0.344 Sum_probs=140.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeC----CCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTA----CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkit----gksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
+...++|||++||+..+++.+|+..|..+|.|..|.+. +....||||.|.+...+-.|+..+.+..|..-.+++.+
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 45679999999999999999999999999999999863 23345999999999999999999999998877777777
Q ss_pred cCCCCCCCCcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCC--
Q 002974 349 SIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAG-- 426 (861)
Q Consensus 349 a~~k~~~~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~G-- 426 (861)
..++ ....+.++|++|...+....|.+.|..||.|..|.+ .+..-||+|.|++...|++|+..|-|..|+|
T Consensus 448 G~~k------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy-~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~ 520 (975)
T KOG0112|consen 448 GQPK------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY-RHGQPYAYIQYESPPAAQAATHDMRGAPLGGPP 520 (975)
T ss_pred cccc------cccceeeccCCCCCCChHHHHHHHhhccCcceeeec-ccCCcceeeecccCccchhhHHHHhcCcCCCCC
Confidence 7552 345678999999999999999999999999999885 3566799999999999999999999999986
Q ss_pred cEEEEEeccCCch
Q 002974 427 KQIKLEASRPGGA 439 (861)
Q Consensus 427 r~IkVe~Akpk~~ 439 (861)
++|+|.++.+-..
T Consensus 521 ~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 521 RRLRVDLASPPGA 533 (975)
T ss_pred cccccccccCCCC
Confidence 8899999987653
No 100
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.80 E-value=8.7e-09 Score=99.16 Aligned_cols=82 Identities=17% Similarity=0.433 Sum_probs=74.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~ 347 (861)
.....-.|||.++...++|++|.+.|..||+|+.+.+ ++-.||||+|+|++.++|++|+.++||..|.|++|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 4445789999999999999999999999999999974 68889999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 002974 348 YSIPKDN 354 (861)
Q Consensus 348 ~a~~k~~ 354 (861)
|+..+..
T Consensus 148 w~Fv~gp 154 (170)
T KOG0130|consen 148 WCFVKGP 154 (170)
T ss_pred EEEecCC
Confidence 9975543
No 101
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.77 E-value=1.2e-08 Score=116.28 Aligned_cols=79 Identities=27% Similarity=0.368 Sum_probs=74.1
Q ss_pred cceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 002974 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (861)
Q Consensus 363 ~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk 437 (861)
..+||+|+|+++++++|..+|+..|.|.++++ +++.|||||++|.+.++|+.|++.|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999875 7888999999999999999999999999999999999999877
Q ss_pred chhh
Q 002974 438 GARR 441 (861)
Q Consensus 438 ~~rr 441 (861)
..+.
T Consensus 99 ~~~~ 102 (435)
T KOG0108|consen 99 KNAE 102 (435)
T ss_pred chhH
Confidence 6554
No 102
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.76 E-value=9.7e-09 Score=98.84 Aligned_cols=81 Identities=21% Similarity=0.407 Sum_probs=73.0
Q ss_pred cccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 002974 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (861)
Q Consensus 358 k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe 432 (861)
+......|||.++....++++|.+.|..||+|+.|.+ ++-.||||+|+|++.++|++|+.+|||..+.|..|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 3445678999999999999999999999999999875 55668999999999999999999999999999999999
Q ss_pred eccCCc
Q 002974 433 ASRPGG 438 (861)
Q Consensus 433 ~Akpk~ 438 (861)
|+--++
T Consensus 148 w~Fv~g 153 (170)
T KOG0130|consen 148 WCFVKG 153 (170)
T ss_pred EEEecC
Confidence 986554
No 103
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.76 E-value=1.5e-09 Score=108.99 Aligned_cols=77 Identities=21% Similarity=0.349 Sum_probs=71.0
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Ak 435 (861)
...-|||+|||+.+|+.||.-.|++||+|+.|.+ +++++||||+.|+|.++...|+..|||..|.||.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 4568999999999999999999999999999864 88999999999999999999999999999999999998754
Q ss_pred CC
Q 002974 436 PG 437 (861)
Q Consensus 436 pk 437 (861)
..
T Consensus 114 ~Y 115 (219)
T KOG0126|consen 114 NY 115 (219)
T ss_pred cc
Confidence 43
No 104
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.76 E-value=1.6e-07 Score=102.82 Aligned_cols=165 Identities=21% Similarity=0.355 Sum_probs=135.0
Q ss_pred CCCCCcEEEEcCCC--CCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccC--cceeeeee
Q 002974 273 GEHPSRTLFVRNIN--SNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLR--RRKLDIHY 348 (861)
Q Consensus 273 ~~~~srtLfVgNLP--~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~--Gr~L~V~~ 348 (861)
...+...|.+.=|. ..+|-+-|..+...+|+|..|.+-.+.--.|+|+|++.+.|++|..+|||..|. ...|+|+|
T Consensus 116 s~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIey 195 (494)
T KOG1456|consen 116 SATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEY 195 (494)
T ss_pred CCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEe
Confidence 34556777766554 568899999999999999999886665568999999999999999999998875 57899999
Q ss_pred cCCCCCC------C-------------C-------------------------------------------------cc-
Q 002974 349 SIPKDNP------S-------------E-------------------------------------------------KD- 359 (861)
Q Consensus 349 a~~k~~~------~-------------~-------------------------------------------------k~- 359 (861)
++|..-. + + ++
T Consensus 196 AkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~ 275 (494)
T KOG1456|consen 196 AKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDG 275 (494)
T ss_pred cCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccC
Confidence 9764210 0 0 00
Q ss_pred ---------cCCcceEEecccCC-CcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Q 002974 360 ---------ANQGTLVVFNLDSS-VSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQI 429 (861)
Q Consensus 360 ---------~~~~tLfVgNLp~s-vTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~I 429 (861)
.....+.|-+|+.. ++-+.|-.+|..||.|+.|+....+.|-|.|++.|..+.++|+..||+..+-|.+|
T Consensus 276 ~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl 355 (494)
T KOG1456|consen 276 RGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKL 355 (494)
T ss_pred CCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceE
Confidence 00236788899764 56688999999999999999887788999999999999999999999999999999
Q ss_pred EEEeccCC
Q 002974 430 KLEASRPG 437 (861)
Q Consensus 430 kVe~Akpk 437 (861)
.|.+++..
T Consensus 356 ~v~~SkQ~ 363 (494)
T KOG1456|consen 356 NVCVSKQN 363 (494)
T ss_pred EEeecccc
Confidence 99998754
No 105
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.75 E-value=1.6e-08 Score=118.52 Aligned_cols=77 Identities=32% Similarity=0.547 Sum_probs=73.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCCCC
Q 002974 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 354 (861)
Q Consensus 277 srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k~~ 354 (861)
++|||||.|+.+++|.||..+|+.||+|.+|.+ ..++|||||.+....+|.+|+.+|.+..+.++.|+|.|+..+.-
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~l-i~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIIL-IPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEee-ccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 899999999999999999999999999999998 67899999999999999999999999999999999999986544
No 106
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.73 E-value=1.9e-08 Score=115.54 Aligned_cols=166 Identities=18% Similarity=0.332 Sum_probs=136.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcC-----------C-CEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccC
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQF-----------G-DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLR 340 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqf-----------G-~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~ 340 (861)
.....+.+||+++|+.++++.+..+|..- | .|..+.+ +..++||||+|.+.++|..|+. +++..+.
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~-n~~~nfa~ie~~s~~~at~~~~-~~~~~f~ 248 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL-NLEKNFAFIEFRSISEATEAMA-LDGIIFE 248 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee-cccccceeEEecCCCchhhhhc-ccchhhC
Confidence 34568999999999999999999988743 3 3777777 6788999999999999999995 9999999
Q ss_pred cceeeeeecCCCCCC-------------------CCcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CC
Q 002974 341 RRKLDIHYSIPKDNP-------------------SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQ 396 (861)
Q Consensus 341 Gr~L~V~~a~~k~~~-------------------~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tg 396 (861)
|+.+++......... ........++||++||..+++++++++...||.++..+. ++
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG 328 (500)
T ss_pred CCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc
Confidence 998887543221110 011123568999999999999999999999999987543 46
Q ss_pred CCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCchh
Q 002974 397 HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGAR 440 (861)
Q Consensus 397 ksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~~r 440 (861)
.+|||||.+|.+......|+..|||..+++++|.|..|......
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~ 372 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASN 372 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchh
Confidence 78999999999999999999999999999999999998776533
No 107
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=9.5e-08 Score=108.51 Aligned_cols=142 Identities=19% Similarity=0.314 Sum_probs=106.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-------CCCccc---EEEEEeCCHHHHHHHHHHcCccccCcce
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-------ACKHRG---FVMISYYDIRAARNAMKALQNKPLRRRK 343 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-------tgksrG---yAFVeF~d~e~A~kALkaLnG~~L~Gr~ 343 (861)
..-++.||||+||++++|++|...|..||.+.--.- ....+| |+|+.|+++...+.-+.+..- ...+
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~ 332 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGN 332 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccc
Confidence 456999999999999999999999999998765432 123556 999999999998887765322 2222
Q ss_pred eeeeecCCCCC-------------------CCCcccCCcceEEecccCCCcHHHHHHHhc-ccCcEEEEEeCC-----CC
Q 002974 344 LDIHYSIPKDN-------------------PSEKDANQGTLVVFNLDSSVSTEELHQIFG-IYGEIREIRDTQ-----HK 398 (861)
Q Consensus 344 L~V~~a~~k~~-------------------~~~k~~~~~tLfVgNLp~svTeedLrelFs-kfGeI~sVritg-----ks 398 (861)
+.+..+.+... ....-...+|||||+||.-++.++|..+|. -||.|..+-|.. -.
T Consensus 333 ~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYP 412 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYP 412 (520)
T ss_pred eEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCC
Confidence 22222221111 111223468999999999999999999999 599999987632 35
Q ss_pred ccEEEEEECCHHHHHHHHHH
Q 002974 399 HNHKFIEFYDIRAAETALRT 418 (861)
Q Consensus 399 KGfAFVeF~d~eaA~kAL~~ 418 (861)
||-|=|.|.+..+-.+||.+
T Consensus 413 kGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 413 KGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCcceeeecccHHHHHHHhh
Confidence 78999999999999999983
No 108
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.70 E-value=2.4e-08 Score=105.20 Aligned_cols=97 Identities=18% Similarity=0.335 Sum_probs=82.1
Q ss_pred cceeeeeecCCCCCCCCcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe----CCCCccEEEEEECCHHHHHHHH
Q 002974 341 RRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD----TQHKHNHKFIEFYDIRAAETAL 416 (861)
Q Consensus 341 Gr~L~V~~a~~k~~~~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri----tgksKGfAFVeF~d~eaA~kAL 416 (861)
.|.|.|+.+..... ...+++|||+-|...-.|||++.+|..||.|++|.+ .+.+||+|||+|.+..+|..||
T Consensus 2 nrpiqvkpadsesr----g~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI 77 (371)
T KOG0146|consen 2 NRPIQVKPADSESR----GGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAI 77 (371)
T ss_pred CCCccccccccccC----CccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHH
Confidence 46777776654322 235789999999999999999999999999999976 5678999999999999999999
Q ss_pred HHhCCCe-eCC--cEEEEEeccCCchhh
Q 002974 417 RTLNRSD-VAG--KQIKLEASRPGGARR 441 (861)
Q Consensus 417 ~~LNG~~-I~G--r~IkVe~Akpk~~rr 441 (861)
..|+|.. +-| ..|.|+++....+|.
T Consensus 78 ~aLHgSqTmpGASSSLVVK~ADTdkER~ 105 (371)
T KOG0146|consen 78 NALHGSQTMPGASSSLVVKFADTDKERT 105 (371)
T ss_pred HHhcccccCCCCccceEEEeccchHHHH
Confidence 9999984 444 789999999887776
No 109
>smart00361 RRM_1 RNA recognition motif.
Probab=98.63 E-value=8.2e-08 Score=82.98 Aligned_cols=57 Identities=28% Similarity=0.474 Sum_probs=50.5
Q ss_pred HHHHHHHhc----ccCcEEEEE-e-----C--CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 002974 376 TEELHQIFG----IYGEIREIR-D-----T--QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (861)
Q Consensus 376 eedLrelFs----kfGeI~sVr-i-----t--gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe 432 (861)
+++|+++|+ +||.|.+|. + + ++++|||||+|.+.++|.+|++.|||+.+.|+.|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 999999884 2 2 5679999999999999999999999999999999873
No 110
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.59 E-value=1.3e-08 Score=104.76 Aligned_cols=129 Identities=23% Similarity=0.298 Sum_probs=106.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeec
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a 349 (861)
....+||||+|+-..|+|+-|.++|-+.|+|..|.+ ..+.| ||||.|+++-...-|++.+||..+.++.++|.+-
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 345799999999999999999999999999999986 34455 9999999999999999999999999888887544
Q ss_pred CCCCCCCCcccCCcceEEec----ccCCCcHHHHHHHhcccCcEEEEEe----CCCCccEEEEEECCHHHHHHHHHHhC
Q 002974 350 IPKDNPSEKDANQGTLVVFN----LDSSVSTEELHQIFGIYGEIREIRD----TQHKHNHKFIEFYDIRAAETALRTLN 420 (861)
Q Consensus 350 ~~k~~~~~k~~~~~tLfVgN----Lp~svTeedLrelFskfGeI~sVri----tgksKGfAFVeF~d~eaA~kAL~~LN 420 (861)
.|+ |...++++.+.+.|+.-|.|..+++ .++.+.++|+.+....+.-.|+....
T Consensus 85 -----------------~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~ 146 (267)
T KOG4454|consen 85 -----------------CGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQ 146 (267)
T ss_pred -----------------cCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhc
Confidence 344 5677899999999999999988875 34567788888876666666665433
No 111
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.57 E-value=1.1e-07 Score=98.86 Aligned_cols=76 Identities=29% Similarity=0.542 Sum_probs=71.2
Q ss_pred cceEEecccCCCcHHHHHH----HhcccCcEEEEEe--CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 002974 363 GTLVVFNLDSSVSTEELHQ----IFGIYGEIREIRD--TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (861)
Q Consensus 363 ~tLfVgNLp~svTeedLre----lFskfGeI~sVri--tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akp 436 (861)
.||||.||+..+..++|++ +|++||+|..|.. +.+.+|-|||.|.+.++|-.|++.|+|..+.|+.++|.||+.
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s 89 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKS 89 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccC
Confidence 3999999999999999988 9999999999875 667899999999999999999999999999999999999998
Q ss_pred Cc
Q 002974 437 GG 438 (861)
Q Consensus 437 k~ 438 (861)
+.
T Consensus 90 ~s 91 (221)
T KOG4206|consen 90 DS 91 (221)
T ss_pred cc
Confidence 75
No 112
>smart00361 RRM_1 RNA recognition motif.
Probab=98.56 E-value=1.5e-07 Score=81.43 Aligned_cols=56 Identities=23% Similarity=0.402 Sum_probs=50.5
Q ss_pred HHHHHHHhh----cCCCEEEEE---e---C--CCcccEEEEEeCCHHHHHHHHHHcCccccCcceeee
Q 002974 291 DSELKALFE----QFGDIRTIY---T---A--CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (861)
Q Consensus 291 EedL~elFs----qfG~I~svk---i---t--gksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V 346 (861)
+++|+++|. +||.|..+. + + +.++|||||+|.+.++|.+|++.|||..+.||.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678899998 999999884 2 2 678999999999999999999999999999999976
No 113
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.56 E-value=1.9e-07 Score=101.73 Aligned_cols=83 Identities=23% Similarity=0.467 Sum_probs=72.9
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHH-cCccccCcceeeee
Q 002974 269 EHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKA-LQNKPLRRRKLDIH 347 (861)
Q Consensus 269 e~~~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALka-LnG~~L~Gr~L~V~ 347 (861)
..+..+...++|||++|...++|.+|++.|.+||+|+.+.+ -..+++|||+|.+.++|+.|.+. ++...|.|++|.|.
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~-~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRI-LPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEe-ecccccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 45566778999999999999999999999999999999997 45667999999999999998875 46566899999999
Q ss_pred ecCCC
Q 002974 348 YSIPK 352 (861)
Q Consensus 348 ~a~~k 352 (861)
|..++
T Consensus 299 Wg~~~ 303 (377)
T KOG0153|consen 299 WGRPK 303 (377)
T ss_pred eCCCc
Confidence 99883
No 114
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.54 E-value=1.2e-07 Score=111.22 Aligned_cols=79 Identities=29% Similarity=0.386 Sum_probs=74.8
Q ss_pred CcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCchhh
Q 002974 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARR 441 (861)
Q Consensus 362 ~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~~rr 441 (861)
.+||||+.|+..+++.||+.+|+.||+|.+|.+. ..+++|||++....+|.+|+.+|+...+.++.|+|.|+..++.+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li-~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI-PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKS 499 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeec-cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcch
Confidence 6899999999999999999999999999999976 478999999999999999999999999999999999999988665
No 115
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.49 E-value=8.1e-08 Score=100.90 Aligned_cols=162 Identities=19% Similarity=0.228 Sum_probs=122.0
Q ss_pred CcEEEEcCCCCCCcHHH-H--HHHhhcCCCEEEEE----eCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeec
Q 002974 277 SRTLFVRNINSNVEDSE-L--KALFEQFGDIRTIY----TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (861)
Q Consensus 277 srtLfVgNLP~~vTEed-L--~elFsqfG~I~svk----itgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a 349 (861)
--..+++++-..+..+- | ...|+.|-.+...+ ..+..++++|+.|....+-.++-..-+++.+.-+++++.-.
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~g 175 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAG 175 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccc
Confidence 34456666666665544 3 55666665544433 24677899999999888888887777778887777766555
Q ss_pred CCCCCC--CCcccCCcceEEecccCCCcHHHHHHHhcccCcEEE---E--EeCCCCccEEEEEECCHHHHHHHHHHhCCC
Q 002974 350 IPKDNP--SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE---I--RDTQHKHNHKFIEFYDIRAAETALRTLNRS 422 (861)
Q Consensus 350 ~~k~~~--~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~s---V--ritgksKGfAFVeF~d~eaA~kAL~~LNG~ 422 (861)
..-.++ .+.+.++-+||++.|..+++++.|.+.|.+|-.-.. | +-+++++||+||.|.+..++..|+++|+|+
T Consensus 176 tswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gk 255 (290)
T KOG0226|consen 176 TSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGK 255 (290)
T ss_pred cccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccc
Confidence 443333 245567889999999999999999999999854322 2 238899999999999999999999999999
Q ss_pred eeCCcEEEEEeccCCc
Q 002974 423 DVAGKQIKLEASRPGG 438 (861)
Q Consensus 423 ~I~Gr~IkVe~Akpk~ 438 (861)
.++.+.|++..+.-+.
T Consensus 256 yVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 256 YVGSRPIKLRKSEWKE 271 (290)
T ss_pred ccccchhHhhhhhHHh
Confidence 9999999997765544
No 116
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.48 E-value=2.8e-07 Score=100.47 Aligned_cols=79 Identities=29% Similarity=0.405 Sum_probs=69.8
Q ss_pred CcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCC-CeeCCcEEEEEecc
Q 002974 357 EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNR-SDVAGKQIKLEASR 435 (861)
Q Consensus 357 ~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG-~~I~Gr~IkVe~Ak 435 (861)
.++..-++|||++|...+++.+|++.|.+||+|+.|++.. .+++|||+|.+.++|+.|.+++-. ..|+|++|+|.|..
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~-~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP-RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec-ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 3456678999999999999999999999999999999764 567999999999999998876544 47899999999999
Q ss_pred C
Q 002974 436 P 436 (861)
Q Consensus 436 p 436 (861)
+
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 8
No 117
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.47 E-value=3.5e-07 Score=100.64 Aligned_cols=201 Identities=15% Similarity=0.202 Sum_probs=122.5
Q ss_pred HHHHHhcCCCCCc-chhhhccccccCCCCCCCCCCCcccccccccCCccccccCcchhhhcc--CCCcCCCccCCCCCCC
Q 002974 188 IEAQTIGNLLPDE-DDLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGDDRLFAVQK--NSDFVGGVSNQGVSAG 264 (861)
Q Consensus 188 ~eaq~IGnLlpdd-DdLlagv~d~~g~~~~~~~~dD~ee~Dvf~s~GGmEle~d~~~s~~~s--~s~~~gg~~~~~~~ng 264 (861)
.....||.|..+. +|-|..-+..++.+..+....|..- -..-..|.++++.+...+.... ...+++..-.......
T Consensus 6 ~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t-~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 6 SGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPST-GRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCC-CCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 3345588888877 7777766666766665555554321 1111223345554442221111 2223321111111111
Q ss_pred cccCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCcccc
Q 002974 265 SVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPL 339 (861)
Q Consensus 265 ~~~Ge~~~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L 339 (861)
..............+|||+.||.++++++|++.|++||.|..+-+ +.+.+||+||.|.+.+++++++. ...+.|
T Consensus 85 r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~ 163 (311)
T KOG4205|consen 85 REDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDF 163 (311)
T ss_pred cccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeee
Confidence 111111222235779999999999999999999999998877753 67899999999999999999995 778889
Q ss_pred CcceeeeeecCCCCCCCCcccC-CcceEEecccCCCcHHHHHHHhcccCcEE
Q 002974 340 RRRKLDIHYSIPKDNPSEKDAN-QGTLVVFNLDSSVSTEELHQIFGIYGEIR 390 (861)
Q Consensus 340 ~Gr~L~V~~a~~k~~~~~k~~~-~~tLfVgNLp~svTeedLrelFskfGeI~ 390 (861)
.++++.|..|.+++........ .......|+....+.-.|..+|.-|+.+.
T Consensus 164 ~gk~vevkrA~pk~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~g~~~~~ 215 (311)
T KOG4205|consen 164 NGKKVEVKRAIPKEVMQSTKSSVSTRGKGNNLGNGRTGFFLKKYFKGYGPVG 215 (311)
T ss_pred cCceeeEeeccchhhccccccccccccccccccccccccccchhccccCccc
Confidence 9999999999998764322111 11222224444444455666666666544
No 118
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.46 E-value=1.8e-07 Score=102.09 Aligned_cols=163 Identities=20% Similarity=0.282 Sum_probs=131.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeec
Q 002974 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (861)
Q Consensus 275 ~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a 349 (861)
...+++|++++...+.+.+...++..+|.+..+.. ...++|+++|.|...+.+..|+.......+.++.+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 45899999999999999999999999998777653 5678999999999999999999754445666665555444
Q ss_pred CCCCCCCC------cccCCcceE-EecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHH
Q 002974 350 IPKDNPSE------KDANQGTLV-VFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALR 417 (861)
Q Consensus 350 ~~k~~~~~------k~~~~~tLf-VgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~ 417 (861)
........ ......++| |++|+.++++++|+..|..+|.|..+++ .+..++||||+|.+...+..|+.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 33321110 111233455 9999999999999999999999999986 45678999999999999999999
Q ss_pred HhCCCeeCCcEEEEEeccCCc
Q 002974 418 TLNRSDVAGKQIKLEASRPGG 438 (861)
Q Consensus 418 ~LNG~~I~Gr~IkVe~Akpk~ 438 (861)
. ....+.++.+.+....+..
T Consensus 246 ~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 246 D-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred c-ccCcccCcccccccCCCCc
Confidence 7 8889999999999988765
No 119
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.36 E-value=7.9e-07 Score=97.75 Aligned_cols=160 Identities=12% Similarity=0.189 Sum_probs=117.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcC-----C--CEEEEEe-CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 277 SRTLFVRNINSNVEDSELKALFEQF-----G--DIRTIYT-ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 277 srtLfVgNLP~~vTEedL~elFsqf-----G--~I~svki-tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
--.|-.++||+++++.|+.++|.+- | .|.-|+. +++..|-|||.|..+++|+.|+. .+...+..|-|.+-.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELFR 239 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHHH
Confidence 4456668999999999999999632 2 2344443 78899999999999999999996 455555555444422
Q ss_pred cCCC-----------------CC-------C---CCcccCCcceEEecccCCCcHHHHHHHhcccCc-EEE--EEe----
Q 002974 349 SIPK-----------------DN-------P---SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGE-IRE--IRD---- 394 (861)
Q Consensus 349 a~~k-----------------~~-------~---~~k~~~~~tLfVgNLp~svTeedLrelFskfGe-I~s--Vri---- 394 (861)
+... .. + ........+|.+++||+..+.|+|.++|..|-. |.. |.+
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~ 319 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG 319 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC
Confidence 2100 00 0 011223678999999999999999999998864 222 332
Q ss_pred CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 002974 395 TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (861)
Q Consensus 395 tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk 437 (861)
.++..|-|||+|.+.+.|.+|....+.+..+.|-|.|-.+.-.
T Consensus 320 qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~e 362 (508)
T KOG1365|consen 320 QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVE 362 (508)
T ss_pred CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHH
Confidence 4667789999999999999999998888888999998776543
No 120
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.34 E-value=6.1e-08 Score=114.97 Aligned_cols=141 Identities=13% Similarity=0.213 Sum_probs=122.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeec
Q 002974 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (861)
Q Consensus 275 ~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a 349 (861)
+..+++||+||+..+.+++|...|..+|.+..+++ .++-||+|||.|..+++|.+|+....++.+.
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g--------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG--------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh---------
Confidence 45678999999999999999999999998877753 6888999999999999999999754443332
Q ss_pred CCCCCCCCcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCCeeC
Q 002974 350 IPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD----TQHKHNHKFIEFYDIRAAETALRTLNRSDVA 425 (861)
Q Consensus 350 ~~k~~~~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~ 425 (861)
...++|.|+|+..|.++|+.+|+++|.+++.++ .++.+|.|+|.|.+..+|.+++...+...+.
T Consensus 736 ------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~r 803 (881)
T KOG0128|consen 736 ------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKR 803 (881)
T ss_pred ------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhh
Confidence 346999999999999999999999999999764 4678999999999999999999988888888
Q ss_pred CcEEEEEeccC
Q 002974 426 GKQIKLEASRP 436 (861)
Q Consensus 426 Gr~IkVe~Akp 436 (861)
-+.+.|..+.|
T Consensus 804 E~~~~v~vsnp 814 (881)
T KOG0128|consen 804 ENNGEVQVSNP 814 (881)
T ss_pred hcCccccccCC
Confidence 88888877766
No 121
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.27 E-value=2.2e-06 Score=88.12 Aligned_cols=80 Identities=19% Similarity=0.358 Sum_probs=72.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcC-CCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQF-GDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqf-G~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V 346 (861)
......-+||+.+|.-+.+.++..+|.++ |.|+.+++ ||.+||||||+|++.+.|.-|-+.||+..+.++.|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 44567789999999999999999999998 77777764 8999999999999999999999999999999999999
Q ss_pred eecCCC
Q 002974 347 HYSIPK 352 (861)
Q Consensus 347 ~~a~~k 352 (861)
++-.+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 987654
No 122
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=9.8e-07 Score=96.20 Aligned_cols=78 Identities=21% Similarity=0.427 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
..|.+.|||-.|.+-++++||.-+|+.||.|.+|.+ ++.+.-||||+|++.+++++|.-.|++..|..+.|.|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 457899999999999999999999999999999974 788888999999999999999999999999999999999
Q ss_pred cCC
Q 002974 349 SIP 351 (861)
Q Consensus 349 a~~ 351 (861)
+..
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 864
No 123
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=3e-06 Score=92.50 Aligned_cols=80 Identities=23% Similarity=0.345 Sum_probs=72.4
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~A 434 (861)
.+...|||.-|.+-+++++|.-+|+.||+|.+|.+ ++.+-.||||+|.+.+++++|.-+|++..|..++|.|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 45678999999999999999999999999999876 4556679999999999999999999999999999999999
Q ss_pred cCCch
Q 002974 435 RPGGA 439 (861)
Q Consensus 435 kpk~~ 439 (861)
+.-..
T Consensus 317 QSVsk 321 (479)
T KOG0415|consen 317 QSVSK 321 (479)
T ss_pred hhhhh
Confidence 87553
No 124
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.09 E-value=6.1e-06 Score=94.22 Aligned_cols=78 Identities=18% Similarity=0.333 Sum_probs=70.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
..-.++|||.+|...+...+|++||++||+|+-.++ +...+.|+||++.+.++|.+||..|+.+.|.|+.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 445899999999999999999999999999998884 344677999999999999999999999999999999988
Q ss_pred cCC
Q 002974 349 SIP 351 (861)
Q Consensus 349 a~~ 351 (861)
++.
T Consensus 482 aKN 484 (940)
T KOG4661|consen 482 AKN 484 (940)
T ss_pred ccc
Confidence 753
No 125
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.07 E-value=8.1e-06 Score=95.56 Aligned_cols=79 Identities=20% Similarity=0.405 Sum_probs=71.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe--------CCCcccEEEEEeCCHHHHHHHHHHcCccccCccee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT--------ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKL 344 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki--------tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L 344 (861)
++...++|||+||++.++++.|...|..||+|..+++ ....+.|+||.|-+..+|++|++.|+|+.+.+..+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 4556889999999999999999999999999999985 34567799999999999999999999999999999
Q ss_pred eeeecCC
Q 002974 345 DIHYSIP 351 (861)
Q Consensus 345 ~V~~a~~ 351 (861)
++.|+++
T Consensus 250 K~gWgk~ 256 (877)
T KOG0151|consen 250 KLGWGKA 256 (877)
T ss_pred eeccccc
Confidence 9999853
No 126
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.04 E-value=5.9e-07 Score=99.65 Aligned_cols=149 Identities=17% Similarity=0.335 Sum_probs=123.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcC--CCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccc-cCcceeeeeecCCCCC
Q 002974 278 RTLFVRNINSNVEDSELKALFEQF--GDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKP-LRRRKLDIHYSIPKDN 354 (861)
Q Consensus 278 rtLfVgNLP~~vTEedL~elFsqf--G~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~-L~Gr~L~V~~a~~k~~ 354 (861)
..||++||.+.++.++|..+|... +--..+ -...|||||.+.+...|.+|++.++|+. +.|+.+.|..+.++..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~f---l~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQF---LVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcce---eeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 468999999999999999999854 111111 1246899999999999999999999975 8899999999988766
Q ss_pred CCCcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCC--ccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 002974 355 PSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHK--HNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (861)
Q Consensus 355 ~~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgks--KGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe 432 (861)
++ +++-|.|+|+...++.|..+...||.++.|..+... .-..-|+|...+.+..||..|+|..+....++|.
T Consensus 79 rs------rk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~ 152 (584)
T KOG2193|consen 79 RS------RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVG 152 (584)
T ss_pred Hh------hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcc
Confidence 53 459999999999999999999999999988653222 2234578889999999999999999999999998
Q ss_pred ecc
Q 002974 433 ASR 435 (861)
Q Consensus 433 ~Ak 435 (861)
|--
T Consensus 153 YiP 155 (584)
T KOG2193|consen 153 YIP 155 (584)
T ss_pred cCc
Confidence 753
No 127
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.02 E-value=1.4e-05 Score=82.39 Aligned_cols=78 Identities=19% Similarity=0.272 Sum_probs=71.6
Q ss_pred cCCcceEEecccCCCcHHHHHHHhccc-CcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIY-GEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskf-GeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
...+.+||..+|.-+.+.++..+|.+| |.|..+++ +|.+||||||+|++.+.|+-|-+.||+..+.++.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 446789999999999999999999998 77887765 789999999999999999999999999999999999999
Q ss_pred ccCC
Q 002974 434 SRPG 437 (861)
Q Consensus 434 Akpk 437 (861)
-.|.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 8877
No 128
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.01 E-value=8.7e-06 Score=93.01 Aligned_cols=76 Identities=20% Similarity=0.366 Sum_probs=68.6
Q ss_pred CcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 002974 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (861)
Q Consensus 362 ~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akp 436 (861)
.++|||.+|...+-..+|+.+|++||+|+-.++ .+..++|+||++.+.++|.+||..|+.+++.|+.|.|+.++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 468999999999999999999999999988775 334578999999999999999999999999999999999865
Q ss_pred C
Q 002974 437 G 437 (861)
Q Consensus 437 k 437 (861)
.
T Consensus 485 E 485 (940)
T KOG4661|consen 485 E 485 (940)
T ss_pred C
Confidence 3
No 129
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.96 E-value=4.1e-06 Score=86.69 Aligned_cols=76 Identities=21% Similarity=0.203 Sum_probs=67.7
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC----CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit----gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akp 436 (861)
..+||||+|+...++++-|.++|-+-|.|..|.+. .+.| ||||.|.++....-|++.+||..+.++.|+|.+-.-
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 46799999999999999999999999999999873 2334 999999999999999999999999999999887654
Q ss_pred C
Q 002974 437 G 437 (861)
Q Consensus 437 k 437 (861)
.
T Consensus 87 ~ 87 (267)
T KOG4454|consen 87 N 87 (267)
T ss_pred C
Confidence 3
No 130
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.91 E-value=1.4e-05 Score=93.70 Aligned_cols=78 Identities=28% Similarity=0.399 Sum_probs=71.0
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC--------CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT--------QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIK 430 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit--------gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~Ik 430 (861)
+...++|||+||++.++++.|...|+.||.|..|++. ...+.++||-|-+..+|++|++.|+|..+.++.++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 5667899999999999999999999999999999862 23467999999999999999999999999999999
Q ss_pred EEeccC
Q 002974 431 LEASRP 436 (861)
Q Consensus 431 Ve~Akp 436 (861)
+.|++.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999964
No 131
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.88 E-value=8.6e-06 Score=85.28 Aligned_cols=71 Identities=24% Similarity=0.433 Sum_probs=66.3
Q ss_pred cceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 002974 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (861)
Q Consensus 363 ~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akp 436 (861)
..+||++||+.+.+.+|..+|..||.|..|.+ ..+|+||+|.|..+|..|+..||+++|.|.++.|++++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m---k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM---KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee---ecccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 36899999999999999999999999999886 468999999999999999999999999998899999885
No 132
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.85 E-value=3.5e-05 Score=82.24 Aligned_cols=79 Identities=27% Similarity=0.384 Sum_probs=70.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
.+.-..+|+|.|||..|+++||+++|.+||.+..+-+ .+.+.|.|=|.|...++|.+|++.++|..+.|+.+++..
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3344678999999999999999999999998887764 688999999999999999999999999999999999887
Q ss_pred cCC
Q 002974 349 SIP 351 (861)
Q Consensus 349 a~~ 351 (861)
..+
T Consensus 159 i~~ 161 (243)
T KOG0533|consen 159 ISS 161 (243)
T ss_pred ecC
Confidence 654
No 133
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.85 E-value=2.2e-05 Score=89.67 Aligned_cols=77 Identities=26% Similarity=0.417 Sum_probs=64.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
.....+|||+|||.++++++|++.|.+||.|+...+ .++...||||+|++.++++.|+.+- -..|.+++|.|+-
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Vee 363 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEE 363 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEe
Confidence 344666999999999999999999999999998875 2344489999999999999999754 6778899999975
Q ss_pred cCC
Q 002974 349 SIP 351 (861)
Q Consensus 349 a~~ 351 (861)
-.+
T Consensus 364 k~~ 366 (419)
T KOG0116|consen 364 KRP 366 (419)
T ss_pred ccc
Confidence 443
No 134
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.84 E-value=2.5e-05 Score=91.28 Aligned_cols=167 Identities=14% Similarity=0.072 Sum_probs=121.7
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhc-CC---CEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeee
Q 002974 271 PYGEHPSRTLFVRNINSNVEDSELKALFEQ-FG---DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (861)
Q Consensus 271 ~~~~~~srtLfVgNLP~~vTEedL~elFsq-fG---~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V 346 (861)
+.-..+.+.+-++.++.+.++.|++++|.. +- .|....+.....|-++|+|....++++|++ -+......|.+.|
T Consensus 305 pqvv~d~~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~ 383 (944)
T KOG4307|consen 305 PQVVSDKYYNNYKGMEFNNDFNDGRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQT 383 (944)
T ss_pred CcccchhheeeecccccccccchhhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceee
Confidence 334445666777899999999999999973 22 233333555568999999999999999986 5666666777777
Q ss_pred eecCCCCC------------C--------------CC---------cccCCcceEEecccCCCcHHHHHHHhcccCcEEE
Q 002974 347 HYSIPKDN------------P--------------SE---------KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE 391 (861)
Q Consensus 347 ~~a~~k~~------------~--------------~~---------k~~~~~tLfVgNLp~svTeedLrelFskfGeI~s 391 (861)
..+..... . .+ .......|||..||..+++.++.++|+..-.|++
T Consensus 384 ~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved 463 (944)
T KOG4307|consen 384 GPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVED 463 (944)
T ss_pred cCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhh
Confidence 44321100 0 00 0112458999999999999999999998777766
Q ss_pred -EEe----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 002974 392 -IRD----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (861)
Q Consensus 392 -Vri----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~ 438 (861)
|.+ +++.++.|||.|..++++.+|...-+...++.+.|+|.-...+.
T Consensus 464 ~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~ 515 (944)
T KOG4307|consen 464 FIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYA 515 (944)
T ss_pred eeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhHH
Confidence 665 34456789999999999999998666677778999998654433
No 135
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.83 E-value=4.5e-05 Score=79.40 Aligned_cols=78 Identities=21% Similarity=0.292 Sum_probs=66.1
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEE--EEeCCCC----ccEEEEEECCHHHHHHHHHHhCCCeeC---CcEEEE
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIRE--IRDTQHK----HNHKFIEFYDIRAAETALRTLNRSDVA---GKQIKL 431 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~s--Vritgks----KGfAFVeF~d~eaA~kAL~~LNG~~I~---Gr~IkV 431 (861)
.-+||||.+||.++...+|+.+|..|---+. ++.+.+. +-+|||.|.+...|.+|+.+|||..++ +..|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 4689999999999999999999999754444 3444443 368999999999999999999999986 789999
Q ss_pred EeccCCc
Q 002974 432 EASRPGG 438 (861)
Q Consensus 432 e~Akpk~ 438 (861)
++++...
T Consensus 113 ElAKSNt 119 (284)
T KOG1457|consen 113 ELAKSNT 119 (284)
T ss_pred eehhcCc
Confidence 9998765
No 136
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.81 E-value=2.9e-05 Score=88.69 Aligned_cols=75 Identities=25% Similarity=0.452 Sum_probs=64.6
Q ss_pred cceEEecccCCCcHHHHHHHhcccCcEEEEEe---C--CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 002974 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRD---T--QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (861)
Q Consensus 363 ~tLfVgNLp~svTeedLrelFskfGeI~sVri---t--gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk 437 (861)
.+|||+|||.+++.++|+++|+.||.|+...+ . ++...||||+|++.++++.||++ +-..|++++|.|+-.++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 45999999999999999999999999998654 1 23348999999999999999995 577899999999987765
Q ss_pred c
Q 002974 438 G 438 (861)
Q Consensus 438 ~ 438 (861)
.
T Consensus 368 ~ 368 (419)
T KOG0116|consen 368 F 368 (419)
T ss_pred c
Confidence 4
No 137
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.73 E-value=6.1e-05 Score=82.61 Aligned_cols=74 Identities=15% Similarity=0.342 Sum_probs=66.8
Q ss_pred CcceEEecccCCCcHHHHHHHhcccCcEEE--------EEe----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Q 002974 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIRE--------IRD----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQI 429 (861)
Q Consensus 362 ~~tLfVgNLp~svTeedLrelFskfGeI~s--------Vri----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~I 429 (861)
++.|||.|||.++|.+++.++|++||.|.. |++ .++-||=|++.|--.++...|++.|++..+.|++|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 567999999999999999999999999876 343 45668889999999999999999999999999999
Q ss_pred EEEecc
Q 002974 430 KLEASR 435 (861)
Q Consensus 430 kVe~Ak 435 (861)
+|+.|+
T Consensus 214 rVerAk 219 (382)
T KOG1548|consen 214 RVERAK 219 (382)
T ss_pred EEehhh
Confidence 999874
No 138
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.73 E-value=8.8e-05 Score=79.25 Aligned_cols=78 Identities=21% Similarity=0.330 Sum_probs=70.2
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sVri----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akp 436 (861)
...+|+|.||++.|+++||+++|..||.++.+-+ .+.+.|.|-|.|...++|++|++.+++..+.|+.+++....+
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 4578999999999999999999999998888755 566789999999999999999999999999999999988776
Q ss_pred Cc
Q 002974 437 GG 438 (861)
Q Consensus 437 k~ 438 (861)
..
T Consensus 162 ~~ 163 (243)
T KOG0533|consen 162 PS 163 (243)
T ss_pred cc
Confidence 54
No 139
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.68 E-value=0.00012 Score=80.96 Aligned_cols=155 Identities=16% Similarity=0.230 Sum_probs=113.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhc-----CCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecC
Q 002974 276 PSRTLFVRNINSNVEDSELKALFEQ-----FGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (861)
Q Consensus 276 ~srtLfVgNLP~~vTEedL~elFsq-----fG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~ 350 (861)
++..+-.++||+..++.+|..+|+- -|.+......+...|.|.|.|.|.+.-+.|++ -+...+.+|.|.|-.+.
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka~ 137 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKAT 137 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeeccC
Confidence 3555667899999999999999973 34444444568888999999999999999997 66677778888775544
Q ss_pred CCCC------------CCCcccCCcceEEecccCCCcHHHHHHHhccc-----C--cEEEEEe-CCCCccEEEEEECCHH
Q 002974 351 PKDN------------PSEKDANQGTLVVFNLDSSVSTEELHQIFGIY-----G--EIREIRD-TQHKHNHKFIEFYDIR 410 (861)
Q Consensus 351 ~k~~------------~~~k~~~~~tLfVgNLp~svTeedLrelFskf-----G--eI~sVri-tgksKGfAFVeF~d~e 410 (861)
..+- +--...++-.|.+++||+++++.|+.++|..- | .|..|+- .++..|-|||.|..++
T Consensus 138 ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee 217 (508)
T KOG1365|consen 138 GEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEE 217 (508)
T ss_pred chhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHH
Confidence 3211 01122345577889999999999999999732 2 2333443 5677899999999999
Q ss_pred HHHHHHHHhCCCeeCCcEEEEE
Q 002974 411 AAETALRTLNRSDVAGKQIKLE 432 (861)
Q Consensus 411 aA~kAL~~LNG~~I~Gr~IkVe 432 (861)
+|+.||.+ |...|+-|-|.+-
T Consensus 218 ~aq~aL~k-hrq~iGqRYIElF 238 (508)
T KOG1365|consen 218 DAQFALRK-HRQNIGQRYIELF 238 (508)
T ss_pred HHHHHHHH-HHHHHhHHHHHHH
Confidence 99999984 5556655655553
No 140
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.62 E-value=0.00021 Score=66.37 Aligned_cols=74 Identities=20% Similarity=0.352 Sum_probs=60.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcC--CCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccC----cceeee
Q 002974 278 RTLFVRNINSNVEDSELKALFEQF--GDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLR----RRKLDI 346 (861)
Q Consensus 278 rtLfVgNLP~~vTEedL~elFsqf--G~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~----Gr~L~V 346 (861)
+||.|+|||...|.++|.+++... |...-+++ ++.+.|||||.|.+++.|.+..+.++|+.+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999988754 44444442 5778999999999999999999999998875 456677
Q ss_pred eecCC
Q 002974 347 HYSIP 351 (861)
Q Consensus 347 ~~a~~ 351 (861)
.||.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77753
No 141
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.62 E-value=2.5e-05 Score=86.56 Aligned_cols=157 Identities=18% Similarity=0.179 Sum_probs=117.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeC--------CCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeec
Q 002974 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTA--------CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (861)
Q Consensus 278 rtLfVgNLP~~vTEedL~elFsqfG~I~svkit--------gksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a 349 (861)
..|.|.||.+.++.++++.||...|+|..+++- ......|||.|.|...+..|- .|.++++-++.|.|-.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 489999999999999999999999999998741 234568999999999988887 58888887877766432
Q ss_pred CCCCC-------------------CC---------C-c-----------------------ccCCcceEEecccCCCcHH
Q 002974 350 IPKDN-------------------PS---------E-K-----------------------DANQGTLVVFNLDSSVSTE 377 (861)
Q Consensus 350 ~~k~~-------------------~~---------~-k-----------------------~~~~~tLfVgNLp~svTee 377 (861)
..... +. . + ..-.++++|.+|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 11000 00 0 0 0013689999999999999
Q ss_pred HHHHHhcccCcEEEEEeC-CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 002974 378 ELHQIFGIYGEIREIRDT-QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (861)
Q Consensus 378 dLrelFskfGeI~sVrit-gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akp 436 (861)
++.+.|..+|+|...++. +...-+|-|+|........|++ ++|.++.-....+..-+|
T Consensus 167 e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP 225 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKP 225 (479)
T ss_pred hhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCc
Confidence 999999999999887753 3345678899999999999998 677777643333333333
No 142
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.62 E-value=6.3e-05 Score=80.07 Aligned_cols=79 Identities=16% Similarity=0.295 Sum_probs=70.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeee
Q 002974 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY-----TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svk-----itgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V 346 (861)
....+.+.+||+|+...++.+++...|+.||.|..+. ..+.+||||||+|.+.+.+++|++ |++..|.|+.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 4566789999999999999999999999999997554 356689999999999999999998 9999999999999
Q ss_pred eecCC
Q 002974 347 HYSIP 351 (861)
Q Consensus 347 ~~a~~ 351 (861)
.+...
T Consensus 175 t~~r~ 179 (231)
T KOG4209|consen 175 TLKRT 179 (231)
T ss_pred eeeee
Confidence 87654
No 143
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.62 E-value=7.2e-05 Score=79.63 Aligned_cols=79 Identities=23% Similarity=0.376 Sum_probs=70.0
Q ss_pred cccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 002974 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (861)
Q Consensus 358 k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe 432 (861)
+......+||+|+...++.+++...|+.||.|..|.+ .++.|||+||+|.+.+.++.|+. |++..|.|+.|.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 3456778999999999999999999999999975543 45679999999999999999999 99999999999999
Q ss_pred eccCC
Q 002974 433 ASRPG 437 (861)
Q Consensus 433 ~Akpk 437 (861)
+.+-.
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 88754
No 144
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.54 E-value=0.00013 Score=83.19 Aligned_cols=104 Identities=15% Similarity=0.162 Sum_probs=80.5
Q ss_pred cceEEecccCCCcHHHHHHHhcccCcEEE---EEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCch
Q 002974 363 GTLVVFNLDSSVSTEELHQIFGIYGEIRE---IRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (861)
Q Consensus 363 ~tLfVgNLp~svTeedLrelFskfGeI~s---VritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~~ 439 (861)
.-|-+++||+++|++||+++|+.++ |+. .+.+++..|-|||+|.+.+++++|++ .+...+..|-|.|-.+...+.
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~e~ 88 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGAEA 88 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCccc
Confidence 4577889999999999999999986 344 34468889999999999999999999 688889999999999988775
Q ss_pred hhhchhhhhhh-cccc-CC-CCCCCCCCcccc
Q 002974 440 RRFMVQSEQEQ-DDLN-LC-QIPFDDLSSGQM 468 (861)
Q Consensus 440 rrl~qq~eq~q-~E~~-vg-kNLp~s~tee~L 468 (861)
...++...-.. .... |- +.||.+++++++
T Consensus 89 d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI 120 (510)
T KOG4211|consen 89 DWVMRPGGPNSSANDGVVRLRGLPFSCTEEDI 120 (510)
T ss_pred cccccCCCCCCCCCCceEEecCCCccCcHHHH
Confidence 55333311111 1111 22 889999999988
No 145
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.47 E-value=0.00012 Score=77.72 Aligned_cols=76 Identities=20% Similarity=0.319 Sum_probs=66.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCE-----EEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeec
Q 002974 275 HPSRTLFVRNINSNVEDSELKALFEQFGDI-----RTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (861)
Q Consensus 275 ~~srtLfVgNLP~~vTEedL~elFsqfG~I-----~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a 349 (861)
...-+||.|.|..+++++-|...|.+|-.. ..-+-+++++||+||.|.++.++..|++.|+|+.++.|.|++.-+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 446789999999999999999999988643 333357999999999999999999999999999999999988655
Q ss_pred C
Q 002974 350 I 350 (861)
Q Consensus 350 ~ 350 (861)
.
T Consensus 268 ~ 268 (290)
T KOG0226|consen 268 E 268 (290)
T ss_pred h
Confidence 4
No 146
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.45 E-value=0.00046 Score=62.35 Aligned_cols=69 Identities=20% Similarity=0.388 Sum_probs=49.1
Q ss_pred cEEEEcCCCCCCcHHH----HHHHhhcCC-CEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCC
Q 002974 278 RTLFVRNINSNVEDSE----LKALFEQFG-DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (861)
Q Consensus 278 rtLfVgNLP~~vTEed----L~elFsqfG-~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~ 351 (861)
..|||.|||.+.+... |+.|+..|| +|..| ..+.|+|.|.+.+.|++|.+.|+|..+.|++|.|.|...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 4699999999998765 556777886 67766 357999999999999999999999999999999999843
No 147
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.40 E-value=0.00065 Score=61.42 Aligned_cols=69 Identities=23% Similarity=0.307 Sum_probs=48.6
Q ss_pred cceEEecccCCCcHHH----HHHHhcccC-cEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 002974 363 GTLVVFNLDSSVSTEE----LHQIFGIYG-EIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (861)
Q Consensus 363 ~tLfVgNLp~svTeed----LrelFskfG-eI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akp 436 (861)
..|+|.|||.+.+... |++++..+| +|.+|. .+-|+|.|.+.+.|.+|.+.|+|..+.|.+|.|.+...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 4699999999887654 667777875 676663 47899999999999999999999999999999999843
No 148
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.27 E-value=5.7e-05 Score=90.50 Aligned_cols=186 Identities=15% Similarity=0.135 Sum_probs=135.9
Q ss_pred CCcEEEEcCCCCCCcHH-HHHHHhhcCCCEEEEEeCC----Ccc-cEEEEEeCCHHHHHHHHHHcCccccCcceeeeeec
Q 002974 276 PSRTLFVRNINSNVEDS-ELKALFEQFGDIRTIYTAC----KHR-GFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (861)
Q Consensus 276 ~srtLfVgNLP~~vTEe-dL~elFsqfG~I~svkitg----ksr-GyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a 349 (861)
..+...+.|+.+...+. ..+..|..+|.|..|+... .+. .++++.+....+++.|.. ..+.-+.++.+.|..+
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCC
Confidence 35677888888887776 5778999999999998632 222 388999999999999985 7888899999998888
Q ss_pred CCCCCCCCcc------cCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHH
Q 002974 350 IPKDNPSEKD------ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRT 418 (861)
Q Consensus 350 ~~k~~~~~k~------~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~ 418 (861)
.++....... ....++||.||+..+.+++|...|..+|.+..+++ .++-+|+|||+|...+.|.+|+..
T Consensus 649 d~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f 728 (881)
T KOG0128|consen 649 DAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF 728 (881)
T ss_pred CchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhh
Confidence 7665332221 12348999999999999999999999998887654 456689999999999999999995
Q ss_pred hCCCeeCCcEEEEEeccCCchhhhchhhhhhhccccCCCCCCCCCCcccc----CCcccEEEEe---CCCCCccee
Q 002974 419 LNRSDVAGKQIKLEASRPGGARRFMVQSEQEQDDLNLCQIPFDDLSSGQM----VSSGVITSTC---MDNGSIQVL 487 (861)
Q Consensus 419 LNG~~I~Gr~IkVe~Akpk~~rrl~qq~eq~q~E~~vgkNLp~s~tee~L----s~fG~I~Sv~---~enG~srGF 487 (861)
..+..++...+.| +++|..-|.+.+ ..+|++++.+ .-.|+.+|.
T Consensus 729 ~d~~~~gK~~v~i-------------------------~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~ 779 (881)
T KOG0128|consen 729 RDSCFFGKISVAI-------------------------SGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGK 779 (881)
T ss_pred hhhhhhhhhhhhe-------------------------eCCCCCCchHHHHhhccccCCccccchhhhhccccccc
Confidence 5444444222222 334444444444 5666666665 445666665
No 149
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.12 E-value=0.00069 Score=63.79 Aligned_cols=77 Identities=22% Similarity=0.388 Sum_probs=48.6
Q ss_pred ceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCC-----eeCCcEEEEEeccCCc
Q 002974 364 TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRS-----DVAGKQIKLEASRPGG 438 (861)
Q Consensus 364 tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~-----~I~Gr~IkVe~Akpk~ 438 (861)
.|.|.+++..++.++|++.|+.||.|..|... .....|+|.|.+.++|++|+..+... .|.+..+.++.-.-..
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~-~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vLeGee 81 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFS-RGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVLEGEE 81 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE---TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE---HHH
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEec-CCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEECCCHH
Confidence 47889999999999999999999999999864 34558999999999999999877544 6677777777655444
Q ss_pred hhh
Q 002974 439 ARR 441 (861)
Q Consensus 439 ~rr 441 (861)
+..
T Consensus 82 E~~ 84 (105)
T PF08777_consen 82 EEE 84 (105)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 150
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.68 E-value=0.0043 Score=58.48 Aligned_cols=59 Identities=17% Similarity=0.282 Sum_probs=39.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCcc
Q 002974 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNK 337 (861)
Q Consensus 278 rtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~ 337 (861)
+.|+|.+++..++-++|+++|++||.|..|.+. +...-|||.|.+.++|++|++.+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~-~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFS-RGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE---TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEec-CCCCEEEEEECCcchHHHHHHHHHhc
Confidence 578999999999999999999999999999873 34448999999999999999876543
No 151
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.66 E-value=0.0029 Score=67.46 Aligned_cols=90 Identities=23% Similarity=0.323 Sum_probs=75.8
Q ss_pred HHHHHHHHHcCccccCcceeeeeecCCCCCCCCcccCCcceEEecccCCCcHHHHHHHhcccCcEEEE----EeCCCCcc
Q 002974 325 RAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREI----RDTQHKHN 400 (861)
Q Consensus 325 e~A~kALkaLnG~~L~Gr~L~V~~a~~k~~~~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sV----ritgksKG 400 (861)
.-|..|...|++....++.|+|.|+.. ..|||.||..-++.+.|.+.|+.||+|... ...++..+
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~-----------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~ 73 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH-----------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTR 73 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc-----------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccc
Confidence 357788888999999999999999963 469999999999999999999999998762 23455667
Q ss_pred EEEEEECCHHHHHHHHHHhCCCeeC
Q 002974 401 HKFIEFYDIRAAETALRTLNRSDVA 425 (861)
Q Consensus 401 fAFVeF~d~eaA~kAL~~LNG~~I~ 425 (861)
-++|+|...-.|.+|++.+...-+.
T Consensus 74 eg~v~~~~k~~a~~a~rr~~~~g~~ 98 (275)
T KOG0115|consen 74 EGIVEFAKKPNARKAARRCREGGFG 98 (275)
T ss_pred cchhhhhcchhHHHHHHHhccCccc
Confidence 8999999999999999987554443
No 152
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.63 E-value=0.0028 Score=71.49 Aligned_cols=77 Identities=29% Similarity=0.380 Sum_probs=60.7
Q ss_pred CCcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCC------------------CccEEEEEECCHHHHHHHHH
Q 002974 356 SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH------------------KHNHKFIEFYDIRAAETALR 417 (861)
Q Consensus 356 ~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgk------------------sKGfAFVeF~d~eaA~kAL~ 417 (861)
.+++...++|.+.|||.+-.-+.|.+||+.+|.|+.|++..- .+-+|+|+|...++|.+|.+
T Consensus 225 ~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 225 DEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 345567899999999999888999999999999999986211 14579999999999999999
Q ss_pred HhCCCeeCCcEEEEE
Q 002974 418 TLNRSDVAGKQIKLE 432 (861)
Q Consensus 418 ~LNG~~I~Gr~IkVe 432 (861)
.|+...-.-.-++|.
T Consensus 305 ~~~~e~~wr~glkvk 319 (484)
T KOG1855|consen 305 LLNPEQNWRMGLKVK 319 (484)
T ss_pred hhchhhhhhhcchhh
Confidence 876554443334443
No 153
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.60 E-value=0.003 Score=69.31 Aligned_cols=78 Identities=26% Similarity=0.374 Sum_probs=64.2
Q ss_pred CCCcEEEEcCCCCCCcHHHH------HHHhhcCCCEEEEEeCCCc------cc--EEEEEeCCHHHHHHHHHHcCccccC
Q 002974 275 HPSRTLFVRNINSNVEDSEL------KALFEQFGDIRTIYTACKH------RG--FVMISYYDIRAARNAMKALQNKPLR 340 (861)
Q Consensus 275 ~~srtLfVgNLP~~vTEedL------~elFsqfG~I~svkitgks------rG--yAFVeF~d~e~A~kALkaLnG~~L~ 340 (861)
....-+||-+||+.+..++. .++|.+||.|..|.+..+. .+ -+||.|.+.++|.+||.+.+|..+.
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 34667899999999887773 2799999999998763322 22 2499999999999999999999999
Q ss_pred cceeeeeecCCC
Q 002974 341 RRKLDIHYSIPK 352 (861)
Q Consensus 341 Gr~L~V~~a~~k 352 (861)
||.|+..|...|
T Consensus 192 Gr~lkatYGTTK 203 (480)
T COG5175 192 GRVLKATYGTTK 203 (480)
T ss_pred CceEeeecCchH
Confidence 999999988765
No 154
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.52 E-value=0.0047 Score=67.80 Aligned_cols=76 Identities=22% Similarity=0.430 Sum_probs=62.2
Q ss_pred CcceEEecccCCCcHHHH------HHHhcccCcEEEEEeCCCC------ccE--EEEEECCHHHHHHHHHHhCCCeeCCc
Q 002974 362 QGTLVVFNLDSSVSTEEL------HQIFGIYGEIREIRDTQHK------HNH--KFIEFYDIRAAETALRTLNRSDVAGK 427 (861)
Q Consensus 362 ~~tLfVgNLp~svTeedL------relFskfGeI~sVritgks------KGf--AFVeF~d~eaA~kAL~~LNG~~I~Gr 427 (861)
..-+||-+|++.+-.|++ .++|.+||+|..|.+..+. .+. .||+|.+.++|.+||.+.+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 456899999998877762 4789999999998763221 122 49999999999999999999999999
Q ss_pred EEEEEeccCC
Q 002974 428 QIKLEASRPG 437 (861)
Q Consensus 428 ~IkVe~Akpk 437 (861)
.|+..|...+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999987654
No 155
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.46 E-value=0.2 Score=55.78 Aligned_cols=73 Identities=11% Similarity=0.120 Sum_probs=60.7
Q ss_pred cceEEecccCCCcHHHHHHHhcccC--cEEEEE-----eCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 002974 363 GTLVVFNLDSSVSTEELHQIFGIYG--EIREIR-----DTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (861)
Q Consensus 363 ~tLfVgNLp~svTeedLrelFskfG--eI~sVr-----itgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Ak 435 (861)
-++||+||-+.+|++||.+....-| .+.+++ ..+++||||+|...+..+.++-++.|-.++|.|..-.|..+.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 4799999999999999999988766 334443 367899999999999999999999999999999766665444
No 156
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.42 E-value=0.0069 Score=50.25 Aligned_cols=52 Identities=23% Similarity=0.374 Sum_probs=43.4
Q ss_pred cceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHH
Q 002974 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETAL 416 (861)
Q Consensus 363 ~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL 416 (861)
+.|-|.+.+....+ .++..|..||+|..+.+. ..+...+|+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 46888999877664 455688899999999875 56789999999999999995
No 157
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.41 E-value=0.0071 Score=50.14 Aligned_cols=53 Identities=21% Similarity=0.435 Sum_probs=43.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHH
Q 002974 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAM 331 (861)
Q Consensus 277 srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kAL 331 (861)
++.|-|.+.+++..+. +.+.|.+||+|..+.++ ....+.||+|.+..+|++|+
T Consensus 1 ~~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 3578888888776654 45589999999999984 56779999999999999995
No 158
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.37 E-value=0.003 Score=70.09 Aligned_cols=79 Identities=20% Similarity=0.300 Sum_probs=69.9
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEEEE-------------eCCCCccEEEEEECCHHHHHHHHHHhCCCeeCC
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIR-------------DTQHKHNHKFIEFYDIRAAETALRTLNRSDVAG 426 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~sVr-------------itgksKGfAFVeF~d~eaA~kAL~~LNG~~I~G 426 (861)
....+|||-+|+..+++++|.++|.++|.|+.=+ .+.+.|+-|.|.|.|..+|++|+.-++++.+.|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3456899999999999999999999999987622 366778999999999999999999999999999
Q ss_pred cEEEEEeccCCc
Q 002974 427 KQIKLEASRPGG 438 (861)
Q Consensus 427 r~IkVe~Akpk~ 438 (861)
.+|+|.++..+.
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999998887654
No 159
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.36 E-value=0.0096 Score=55.81 Aligned_cols=74 Identities=20% Similarity=0.300 Sum_probs=54.1
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEEE------------eCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCc-
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIR------------DTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGK- 427 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sVr------------itgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr- 427 (861)
..+.|.|.+.|+.. -..|.+.|++||+|.+.. -.....+...|+|.++.+|.+||+ -||..+.|.
T Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 34678999999884 456778999999998875 123456789999999999999999 699999985
Q ss_pred EEEEEeccC
Q 002974 428 QIKLEASRP 436 (861)
Q Consensus 428 ~IkVe~Akp 436 (861)
.+-|.++++
T Consensus 83 mvGV~~~~~ 91 (100)
T PF05172_consen 83 MVGVKPCDP 91 (100)
T ss_dssp EEEEEE-HH
T ss_pred EEEEEEcHH
Confidence 556777743
No 160
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.12 E-value=0.0062 Score=67.70 Aligned_cols=80 Identities=20% Similarity=0.274 Sum_probs=71.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE-------------eCCCcccEEEEEeCCHHHHHHHHHHcCccccC
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY-------------TACKHRGFVMISYYDIRAARNAMKALQNKPLR 340 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svk-------------itgksrGyAFVeF~d~e~A~kALkaLnG~~L~ 340 (861)
.....+|||-+||..+++.+|.+.|.+||.|..-+ .|.+.|+-|.|.|.|...|+.|+..++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45678999999999999999999999999886543 26789999999999999999999999999999
Q ss_pred cceeeeeecCCCC
Q 002974 341 RRKLDIHYSIPKD 353 (861)
Q Consensus 341 Gr~L~V~~a~~k~ 353 (861)
+..|+|..+..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999998886543
No 161
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.11 E-value=0.0051 Score=69.50 Aligned_cols=74 Identities=28% Similarity=0.486 Sum_probs=59.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCC-------------------cccEEEEEeCCHHHHHHHHHH
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACK-------------------HRGFVMISYYDIRAARNAMKA 333 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgk-------------------srGyAFVeF~d~e~A~kALka 333 (861)
.+-++++|.+-|||.+-.-+-|.++|..||.|..|++ ++ .+-+|+|+|...+.|.+|.+.
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRI-ckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRI-CKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeee-cCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 3458999999999999999999999999999999986 11 255899999999999999997
Q ss_pred cCccccCcceeeee
Q 002974 334 LQNKPLRRRKLDIH 347 (861)
Q Consensus 334 LnG~~L~Gr~L~V~ 347 (861)
|+...-+..-|+|.
T Consensus 306 ~~~e~~wr~glkvk 319 (484)
T KOG1855|consen 306 LNPEQNWRMGLKVK 319 (484)
T ss_pred hchhhhhhhcchhh
Confidence 76554444444443
No 162
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=95.80 E-value=0.0074 Score=66.39 Aligned_cols=78 Identities=22% Similarity=0.440 Sum_probs=69.2
Q ss_pred CCcEEE-EcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeec
Q 002974 276 PSRTLF-VRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (861)
Q Consensus 276 ~srtLf-VgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a 349 (861)
+..++| |++|+.++++++|+..|..+|.|..+++ ++..+|||||.|.....+..|+.. +...+.++.+.+.+.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 455555 9999999999999999999999999985 678999999999999999999987 888899999999988
Q ss_pred CCCCC
Q 002974 350 IPKDN 354 (861)
Q Consensus 350 ~~k~~ 354 (861)
.+...
T Consensus 262 ~~~~~ 266 (285)
T KOG4210|consen 262 EPRPK 266 (285)
T ss_pred CCCcc
Confidence 76544
No 163
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.73 E-value=0.035 Score=67.81 Aligned_cols=80 Identities=25% Similarity=0.375 Sum_probs=71.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCc--ceeeeeecC
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSI 350 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~G--r~L~V~~a~ 350 (861)
...+.+.+||++|.+.+....|...|..||.|+.|.+ ....-||||.|++...|+.|+..|.|..|.+ +.|+|.|+.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy-~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY-RHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeec-ccCCcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 5567999999999999999999999999999999987 4455699999999999999999999999984 779998886
Q ss_pred CCC
Q 002974 351 PKD 353 (861)
Q Consensus 351 ~k~ 353 (861)
+..
T Consensus 530 ~~~ 532 (975)
T KOG0112|consen 530 PPG 532 (975)
T ss_pred CCC
Confidence 543
No 164
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.70 E-value=0.024 Score=67.35 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=61.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCE----EEEE-eCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 278 RTLFVRNINSNVEDSELKALFEQFGDI----RTIY-TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 278 rtLfVgNLP~~vTEedL~elFsqfG~I----~svk-itgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
+.|-+.|+|++++.+||.++|..|-.+ ..-+ ..++..|-|.|.|++.++|.+|...|+++.|..|++++..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 378899999999999999999999643 2222 3688899999999999999999999999999999988753
No 165
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.58 E-value=0.0062 Score=65.05 Aligned_cols=68 Identities=22% Similarity=0.393 Sum_probs=58.6
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCC---------------ccE--EEEEECCHHHHHHHHHHhCCCe
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHK---------------HNH--KFIEFYDIRAAETALRTLNRSD 423 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgks---------------KGf--AFVeF~d~eaA~kAL~~LNG~~ 423 (861)
..+.||+++||+.+...-|+++|+.||+|-.|.+.+.. +.| |.|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 45789999999999999999999999999998763211 112 8999999999999999999999
Q ss_pred eCCcE
Q 002974 424 VAGKQ 428 (861)
Q Consensus 424 I~Gr~ 428 (861)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99865
No 166
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.51 E-value=0.009 Score=63.84 Aligned_cols=68 Identities=18% Similarity=0.404 Sum_probs=59.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeC-------------CCccc----EEEEEeCCHHHHHHHHHHcCccc
Q 002974 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTA-------------CKHRG----FVMISYYDIRAARNAMKALQNKP 338 (861)
Q Consensus 276 ~srtLfVgNLP~~vTEedL~elFsqfG~I~svkit-------------gksrG----yAFVeF~d~e~A~kALkaLnG~~ 338 (861)
....||+++||+.+.-.-|+++|.+||.|-.|++. +.++. -|+|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 57789999999999999999999999999999852 11221 38999999999999999999999
Q ss_pred cCcce
Q 002974 339 LRRRK 343 (861)
Q Consensus 339 L~Gr~ 343 (861)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99876
No 167
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.20 E-value=0.038 Score=64.46 Aligned_cols=76 Identities=17% Similarity=0.227 Sum_probs=60.2
Q ss_pred cCCcceEEecccCCC------cHHHHHHHhcccCcEEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCCeeC-CcE
Q 002974 360 ANQGTLVVFNLDSSV------STEELHQIFGIYGEIREIRD----TQHKHNHKFIEFYDIRAAETALRTLNRSDVA-GKQ 428 (861)
Q Consensus 360 ~~~~tLfVgNLp~sv------TeedLrelFskfGeI~sVri----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~-Gr~ 428 (861)
.....|+|.|+|.-- -..-|.++|+++|+|..+.+ .+..+||.|++|.+..+|+.|++.|||+.|. .++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 345688999998522 23457789999999988654 4567999999999999999999999999886 577
Q ss_pred EEEEecc
Q 002974 429 IKLEASR 435 (861)
Q Consensus 429 IkVe~Ak 435 (861)
..|...+
T Consensus 136 f~v~~f~ 142 (698)
T KOG2314|consen 136 FFVRLFK 142 (698)
T ss_pred EEeehhh
Confidence 7776543
No 168
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.19 E-value=0.0089 Score=63.93 Aligned_cols=61 Identities=30% Similarity=0.402 Sum_probs=50.0
Q ss_pred HHHHHHhc-ccCcEEEEEeC----CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 002974 377 EELHQIFG-IYGEIREIRDT----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (861)
Q Consensus 377 edLrelFs-kfGeI~sVrit----gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk 437 (861)
++|...|+ +||+|+++++- ..-.|-++|.|...++|++|++.||+..+.|++|..++..-.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 45555556 89999998642 234677999999999999999999999999999999887543
No 169
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.83 E-value=0.059 Score=50.58 Aligned_cols=73 Identities=12% Similarity=0.178 Sum_probs=53.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE------------eCCCcccEEEEEeCCHHHHHHHHHHcCccccCcc-
Q 002974 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIY------------TACKHRGFVMISYYDIRAARNAMKALQNKPLRRR- 342 (861)
Q Consensus 276 ~srtLfVgNLP~~vTEedL~elFsqfG~I~svk------------itgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr- 342 (861)
..+.|.|=+.|+. ....+.+.|++||+|.+.. .......+..|+|.++.+|++||+ .||+.+.|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 3566888888877 6677888999999999886 113455699999999999999996 899999875
Q ss_pred eeeeeecC
Q 002974 343 KLDIHYSI 350 (861)
Q Consensus 343 ~L~V~~a~ 350 (861)
.+-|.+..
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 45566663
No 170
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.73 E-value=0.042 Score=64.15 Aligned_cols=72 Identities=21% Similarity=0.389 Sum_probs=57.1
Q ss_pred CcEEEEcCCCCCCc------HHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHcCccccC-cceee
Q 002974 277 SRTLFVRNINSNVE------DSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLR-RRKLD 345 (861)
Q Consensus 277 srtLfVgNLP~~vT------EedL~elFsqfG~I~svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~-Gr~L~ 345 (861)
...|+|-|+|---. ..-|.++|+++|+|..+++ .++.+||.|++|.+.++|+.|++.|||+.|. ...+.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 45677888874321 2346689999999999885 4779999999999999999999999999876 56666
Q ss_pred eee
Q 002974 346 IHY 348 (861)
Q Consensus 346 V~~ 348 (861)
|..
T Consensus 138 v~~ 140 (698)
T KOG2314|consen 138 VRL 140 (698)
T ss_pred eeh
Confidence 643
No 171
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.54 E-value=0.12 Score=51.69 Aligned_cols=76 Identities=29% Similarity=0.370 Sum_probs=53.8
Q ss_pred cCCcceEEecccC-----CCcH----HHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Q 002974 360 ANQGTLVVFNLDS-----SVST----EELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIK 430 (861)
Q Consensus 360 ~~~~tLfVgNLp~-----svTe----edLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~Ik 430 (861)
....||.|.=+.+ ..-+ .+|.+.|..||+|.=||..+ +.-+|+|.+-+.|.+|+. ++|..+.|+.|+
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~---~~mwVTF~dg~sALaals-~dg~~v~g~~l~ 100 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG---DTMWVTFRDGQSALAALS-LDGIQVNGRTLK 100 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET---TCEEEEESSCHHHHHHHH-GCCSEETTEEEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC---CeEEEEECccHHHHHHHc-cCCcEECCEEEE
Confidence 4566777775551 1222 46888899999998888764 468999999999999999 999999999999
Q ss_pred EEeccCCch
Q 002974 431 LEASRPGGA 439 (861)
Q Consensus 431 Ve~Akpk~~ 439 (861)
|+...|.-.
T Consensus 101 i~LKtpdW~ 109 (146)
T PF08952_consen 101 IRLKTPDWL 109 (146)
T ss_dssp EEE------
T ss_pred EEeCCccHH
Confidence 999887653
No 172
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.45 E-value=0.025 Score=63.95 Aligned_cols=78 Identities=27% Similarity=0.362 Sum_probs=62.7
Q ss_pred cceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCC-eeCCcEEEEEeccCCchhh
Q 002974 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRS-DVAGKQIKLEASRPGGARR 441 (861)
Q Consensus 363 ~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~-~I~Gr~IkVe~Akpk~~rr 441 (861)
.++|++||.+.++..+|..+|... +|-.-...--..||+||.+.|...|.+|++.++|+ ++.|+++.|+.+.++..|.
T Consensus 2 nklyignL~p~~~psdl~svfg~a-k~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqrs 80 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDA-KIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQRS 80 (584)
T ss_pred CcccccccCCCCChHHHHHHhccc-cCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHHh
Confidence 469999999999999999999764 11000111124689999999999999999999998 7889999999998887555
No 173
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.15 E-value=0.041 Score=60.93 Aligned_cols=71 Identities=15% Similarity=0.276 Sum_probs=59.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCC--CEEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeee
Q 002974 277 SRTLFVRNINSNVEDSELKALFEQFG--DIRTIY-----TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (861)
Q Consensus 277 srtLfVgNLP~~vTEedL~elFsqfG--~I~svk-----itgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~ 347 (861)
.-.+|||||-+.+|++||.+....-| .+.+++ ..+.+||||+|...+..+.++.++.|-.+.|.|+.-.|-
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 56799999999999999999887666 344443 478999999999999999999999999999988876553
No 174
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.00 E-value=0.11 Score=56.76 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=50.4
Q ss_pred HHHHHHHhcccCcEEEEEeCC---CC---ccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 002974 376 TEELHQIFGIYGEIREIRDTQ---HK---HNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (861)
Q Consensus 376 eedLrelFskfGeI~sVritg---ks---KGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akp 436 (861)
++++++.+.+||.|..|.+.. .. .--.||+|...++|.+|+-.|||+.|+||.++..+..-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 477899999999999876521 11 12379999999999999999999999999999888764
No 175
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=93.93 E-value=0.042 Score=64.45 Aligned_cols=79 Identities=22% Similarity=0.329 Sum_probs=66.2
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhh-cCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccC---cceeee
Q 002974 271 PYGEHPSRTLFVRNINSNVEDSELKALFE-QFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLR---RRKLDI 346 (861)
Q Consensus 271 ~~~~~~srtLfVgNLP~~vTEedL~elFs-qfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~---Gr~L~V 346 (861)
|.....++.|||.||=.-.|.-+|+.|+. .+|.|...++ .+-|-.|||.|.+.++|.+.+.+|+|..+- .+.|.+
T Consensus 438 PsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm-DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 438 PSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM-DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHH-HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 34566799999999999999999999999 6778888776 456778999999999999999999997653 566777
Q ss_pred eecC
Q 002974 347 HYSI 350 (861)
Q Consensus 347 ~~a~ 350 (861)
.|..
T Consensus 517 df~~ 520 (718)
T KOG2416|consen 517 DFVR 520 (718)
T ss_pred eecc
Confidence 6654
No 176
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=93.79 E-value=0.13 Score=59.91 Aligned_cols=62 Identities=23% Similarity=0.315 Sum_probs=55.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhh-cCCCEEEEEeC-----CCcccEEEEEeCCHHHHHHHHHH
Q 002974 272 YGEHPSRTLFVRNINSNVEDSELKALFE-QFGDIRTIYTA-----CKHRGFVMISYYDIRAARNAMKA 333 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTEedL~elFs-qfG~I~svkit-----gksrGyAFVeF~d~e~A~kALka 333 (861)
..-++.+|||||.||.-++.++|..+|+ -||.|..+-++ +-.+|-|-|.|.+-.+-.+||.+
T Consensus 365 q~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 3567899999999999999999999999 89999988752 45889999999999999999973
No 177
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=93.14 E-value=0.091 Score=59.19 Aligned_cols=73 Identities=19% Similarity=0.383 Sum_probs=61.3
Q ss_pred cceEEecccCCCcHHHHHHHhcccCcEEEEEeCCC--------CccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 002974 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH--------KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (861)
Q Consensus 363 ~tLfVgNLp~svTeedLrelFskfGeI~sVritgk--------sKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~A 434 (861)
+.|-|.||.++++.++++.+|.-.|+|.++++++. ....|||.|.|...+..|.. |....+-++.|.|-++
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 47999999999999999999999999999987552 23479999999999999877 7778777777777665
Q ss_pred cC
Q 002974 435 RP 436 (861)
Q Consensus 435 kp 436 (861)
-.
T Consensus 87 ~~ 88 (479)
T KOG4676|consen 87 GD 88 (479)
T ss_pred CC
Confidence 43
No 178
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=92.79 E-value=0.27 Score=49.10 Aligned_cols=73 Identities=23% Similarity=0.383 Sum_probs=52.2
Q ss_pred CCcEEEEcCCC-----C-CCcH---HHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeee
Q 002974 276 PSRTLFVRNIN-----S-NVED---SELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (861)
Q Consensus 276 ~srtLfVgNLP-----~-~vTE---edL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V 346 (861)
+..||.|.=+. . ..++ .+|.+.|.+||++.-++... +.-+|.|.+-+.|.+|+. ++|..+.|+.|+|
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~---~~mwVTF~dg~sALaals-~dg~~v~g~~l~i 101 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG---DTMWVTFRDGQSALAALS-LDGIQVNGRTLKI 101 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET---TCEEEEESSCHHHHHHHH-GCCSEETTEEEEE
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC---CeEEEEECccHHHHHHHc-cCCcEECCEEEEE
Confidence 45666666554 1 2222 36778899999999888632 578999999999999996 9999999999999
Q ss_pred eecCCC
Q 002974 347 HYSIPK 352 (861)
Q Consensus 347 ~~a~~k 352 (861)
+.-.+.
T Consensus 102 ~LKtpd 107 (146)
T PF08952_consen 102 RLKTPD 107 (146)
T ss_dssp EE----
T ss_pred EeCCcc
Confidence 876553
No 179
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.73 E-value=0.17 Score=59.18 Aligned_cols=79 Identities=22% Similarity=0.238 Sum_probs=60.9
Q ss_pred ccCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhh--cCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCc--cccCc
Q 002974 266 VVGEHPYGEHPSRTLFVRNINSNVEDSELKALFE--QFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQN--KPLRR 341 (861)
Q Consensus 266 ~~Ge~~~~~~~srtLfVgNLP~~vTEedL~elFs--qfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG--~~L~G 341 (861)
..|++....+..|.|.++-||..+-+++++.||+ .|-++.+|... ...-.||.|++..||++|.+.|.. +.|.|
T Consensus 164 ekgekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa--~N~nWyITfesd~DAQqAykylreevk~fqg 241 (684)
T KOG2591|consen 164 EKGEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFA--HNDNWYITFESDTDAQQAYKYLREEVKTFQG 241 (684)
T ss_pred cCccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeee--ecCceEEEeecchhHHHHHHHHHHHHHhhcC
Confidence 3445555666788899999999999999999998 48888888762 233479999999999999988754 34666
Q ss_pred ceeee
Q 002974 342 RKLDI 346 (861)
Q Consensus 342 r~L~V 346 (861)
++|..
T Consensus 242 KpImA 246 (684)
T KOG2591|consen 242 KPIMA 246 (684)
T ss_pred cchhh
Confidence 66543
No 180
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=92.73 E-value=0.052 Score=58.23 Aligned_cols=58 Identities=19% Similarity=0.300 Sum_probs=47.5
Q ss_pred HHHHHhh-cCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecC
Q 002974 293 ELKALFE-QFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (861)
Q Consensus 293 dL~elFs-qfG~I~svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~ 350 (861)
+|...|+ +||+|+.+.+ ...-+|-+||.|...++|++|+..||+..+.|++|...+..
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 3444444 8999999875 22356789999999999999999999999999999988764
No 181
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.67 E-value=0.19 Score=57.89 Aligned_cols=63 Identities=22% Similarity=0.281 Sum_probs=54.3
Q ss_pred cHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCch
Q 002974 375 STEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (861)
Q Consensus 375 TeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~~ 439 (861)
+-++|...|.+||+|..|.+.. +--.|.|+|.+..+|-+|-. .++..|+++.|+|.|-.+...
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~~-~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~~ 448 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVDY-SSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSPV 448 (526)
T ss_pred hHhhhhhhhhhcCccccccccC-chhhheeeeeccccccchhc-cccceecCceeEEEEecCCcc
Confidence 4588999999999999998643 35679999999999988877 699999999999999998663
No 182
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=91.51 E-value=0.75 Score=42.02 Aligned_cols=56 Identities=16% Similarity=0.315 Sum_probs=43.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCc
Q 002974 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQN 336 (861)
Q Consensus 277 srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG 336 (861)
....||. .|..+...||.++|+.||.|.--.++ -.-|||...+.+.|..|+..+..
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~---dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIN---DTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEEEC---TTEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEEEc---CCcEEEEeecHHHHHHHHHHhcc
Confidence 3456666 99999999999999999999888873 34799999999999999987753
No 183
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.40 E-value=0.7 Score=46.09 Aligned_cols=76 Identities=21% Similarity=0.322 Sum_probs=58.2
Q ss_pred cccCCcceEEecccCCCc-HHH---HHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 358 KDANQGTLVVFNLDSSVS-TEE---LHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 358 k~~~~~tLfVgNLp~svT-eed---LrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
++..-.+|.|+=|..++. .+| +.+..+.||+|.+|...| +.-|.|.|+|..+|-+|+.++.. ...|..+++.|
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 345567888886665542 234 455567899999998765 56799999999999999998766 66788888888
Q ss_pred ccC
Q 002974 434 SRP 436 (861)
Q Consensus 434 Akp 436 (861)
-.+
T Consensus 159 qqr 161 (166)
T PF15023_consen 159 QQR 161 (166)
T ss_pred ccc
Confidence 654
No 184
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=91.12 E-value=0.21 Score=58.85 Aligned_cols=79 Identities=15% Similarity=0.250 Sum_probs=66.0
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcc-cCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCee---CCcEEEEEec
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGI-YGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDV---AGKQIKLEAS 434 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFsk-fGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I---~Gr~IkVe~A 434 (861)
......|+|.||-.-.|.-+|+.++.+ .|.|++. ++.+-|..|||.|.+.++|.+.+.+|||... +++.|.+.|.
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFV 519 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH-HHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeec
Confidence 344678999999999999999999995 5666665 5556788999999999999999999999854 4689999988
Q ss_pred cCCc
Q 002974 435 RPGG 438 (861)
Q Consensus 435 kpk~ 438 (861)
....
T Consensus 520 ~~de 523 (718)
T KOG2416|consen 520 RADE 523 (718)
T ss_pred chhH
Confidence 7554
No 185
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=90.31 E-value=1 Score=45.01 Aligned_cols=76 Identities=22% Similarity=0.333 Sum_probs=59.0
Q ss_pred CCCCCCcEEEEcCCCCCCcH-HHH---HHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeee
Q 002974 272 YGEHPSRTLFVRNINSNVED-SEL---KALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTE-edL---~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~ 347 (861)
..+.+-.||.|+=|..++.. +|| ..-++.||+|.+|...| +--|.|.|.|..+|-+|+.+++. ...|..+++.
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 35678899999877766642 444 45567899999998744 45799999999999999999886 5667888887
Q ss_pred ecC
Q 002974 348 YSI 350 (861)
Q Consensus 348 ~a~ 350 (861)
|-.
T Consensus 158 Wqq 160 (166)
T PF15023_consen 158 WQQ 160 (166)
T ss_pred ccc
Confidence 754
No 186
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.89 E-value=1.7 Score=47.96 Aligned_cols=75 Identities=19% Similarity=0.223 Sum_probs=60.2
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCC-cEEEEEeccCCc
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAG-KQIKLEASRPGG 438 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~G-r~IkVe~Akpk~ 438 (861)
.+.-|.|.++++.-. .-|..+|.+||+|.+.. .+....+-+|.|.++-+|.+||. -||+.|+| ..|=|..+..+.
T Consensus 196 ~D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv-~~~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 196 ADTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHV-TPSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDKS 271 (350)
T ss_pred ccceEEEeccCccch-hHHHHHHHhhCeeeeee-cCCCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCHH
Confidence 367788889987544 45677999999998876 34667799999999999999999 59999988 466777776654
No 187
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=88.33 E-value=0.92 Score=49.77 Aligned_cols=74 Identities=16% Similarity=0.348 Sum_probs=55.0
Q ss_pred CcEEEEcCC--CCCCc---HHHHHHHhhcCCCEEEEEe---CC---CcccEEEEEeCCHHHHHHHHHHcCccccCcceee
Q 002974 277 SRTLFVRNI--NSNVE---DSELKALFEQFGDIRTIYT---AC---KHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (861)
Q Consensus 277 srtLfVgNL--P~~vT---EedL~elFsqfG~I~svki---tg---ksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~ 345 (861)
.+.|.++|+ +-.++ +.++++-.++||.|..|.+ .+ ...--.||+|...++|.+|+-.|||..+.||.+.
T Consensus 281 tkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~ 360 (378)
T KOG1996|consen 281 TKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVS 360 (378)
T ss_pred hHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeee
Confidence 444555555 23444 3467788899999998874 11 1122579999999999999999999999999988
Q ss_pred eeecC
Q 002974 346 IHYSI 350 (861)
Q Consensus 346 V~~a~ 350 (861)
..|..
T Consensus 361 A~Fyn 365 (378)
T KOG1996|consen 361 ACFYN 365 (378)
T ss_pred heecc
Confidence 77664
No 188
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=85.84 E-value=0.77 Score=47.26 Aligned_cols=77 Identities=8% Similarity=0.081 Sum_probs=49.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhc-CCCE---EEEE--e-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcc
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQ-FGDI---RTIY--T-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRR 342 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsq-fG~I---~svk--i-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr 342 (861)
+.....|.|++||+..|++++.+.+.. +++- ..+. . ....-.-|||.|.+.+++....+.++|..+.+.
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 345679999999999999999997776 6665 3332 1 111223699999999999999999999876532
Q ss_pred -----eeeeeecC
Q 002974 343 -----KLDIHYSI 350 (861)
Q Consensus 343 -----~L~V~~a~ 350 (861)
...|.+|.
T Consensus 84 kg~~~~~~VE~Ap 96 (176)
T PF03467_consen 84 KGNEYPAVVEFAP 96 (176)
T ss_dssp TS-EEEEEEEE-S
T ss_pred CCCCcceeEEEcc
Confidence 33455553
No 189
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=85.11 E-value=2.6 Score=36.47 Aligned_cols=54 Identities=24% Similarity=0.318 Sum_probs=40.8
Q ss_pred CcceEEecccCCCcHHHHHHHhccc----CcEEEEEeCCCCccEEEEEECCHHHHHHHHHHh
Q 002974 362 QGTLVVFNLDSSVSTEELHQIFGIY----GEIREIRDTQHKHNHKFIEFYDIRAAETALRTL 419 (861)
Q Consensus 362 ~~tLfVgNLp~svTeedLrelFskf----GeI~sVritgksKGfAFVeF~d~eaA~kAL~~L 419 (861)
..+|+|.+++ +++.++|+.+|..| +. ..|..... .-|=|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdD--tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDD--TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecC--CcEEEEECCHHHHHHHHHcC
Confidence 3579999995 48889999999998 42 33443222 23789999999999999865
No 190
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=84.24 E-value=4 Score=37.45 Aligned_cols=53 Identities=17% Similarity=0.288 Sum_probs=39.0
Q ss_pred ceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhC
Q 002974 364 TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLN 420 (861)
Q Consensus 364 tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LN 420 (861)
..+|+ .|..+...||.++|+.||.|.--=+. -.-|||...+.+.|..|+..+.
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~---dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIN---DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEEEEEEC---TTEEEEEECCCHHHHHHHHHHT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEEEEEEc---CCcEEEEeecHHHHHHHHHHhc
Confidence 44555 99999999999999999987433222 2369999999999999999875
No 191
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=83.87 E-value=1.6 Score=45.41 Aligned_cols=62 Identities=16% Similarity=0.273 Sum_probs=46.1
Q ss_pred cHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcC--ccccCcceeeeeecCCC
Q 002974 290 EDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQ--NKPLRRRKLDIHYSIPK 352 (861)
Q Consensus 290 TEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLn--G~~L~Gr~L~V~~a~~k 352 (861)
..+.|+++|..|+.+..+.. -++-+-..|.|.+.++|.+|...|+ +..+.|..++|-|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~-L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSP-LKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEE-ETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEE-cCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 34789999999998877764 3566678999999999999999999 89999999999988543
No 192
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=83.70 E-value=2 Score=44.62 Aligned_cols=63 Identities=17% Similarity=0.292 Sum_probs=45.5
Q ss_pred cHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhC--CCeeCCcEEEEEeccCCc
Q 002974 375 STEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLN--RSDVAGKQIKLEASRPGG 438 (861)
Q Consensus 375 TeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LN--G~~I~Gr~IkVe~Akpk~ 438 (861)
..+.|+++|..|+.+....... +=+=..|.|.+.++|.+|...|+ +..+.|..++|.++....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~-sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK-SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET-TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcC-CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 3578999999999988876543 33348899999999999999999 999999999999996543
No 193
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=83.64 E-value=4.7 Score=34.91 Aligned_cols=54 Identities=20% Similarity=0.425 Sum_probs=41.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcC----CCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHc
Q 002974 277 SRTLFVRNINSNVEDSELKALFEQF----GDIRTIYTACKHRGFVMISYYDIRAARNAMKAL 334 (861)
Q Consensus 277 srtLfVgNLP~~vTEedL~elFsqf----G~I~svkitgksrGyAFVeF~d~e~A~kALkaL 334 (861)
...|+|+++. +.+.++|+.+|..| ++..-=.+... -|=|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 4579999996 68889999999999 54333234222 4668999999999999765
No 194
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=82.82 E-value=1.8 Score=44.63 Aligned_cols=75 Identities=9% Similarity=0.078 Sum_probs=49.8
Q ss_pred CCcceEEecccCCCcHHHHHHHhcc-cCcE---EEEE--eCC---C--CccEEEEEECCHHHHHHHHHHhCCCeeCC---
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGI-YGEI---REIR--DTQ---H--KHNHKFIEFYDIRAAETALRTLNRSDVAG--- 426 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFsk-fGeI---~sVr--itg---k--sKGfAFVeF~d~eaA~kAL~~LNG~~I~G--- 426 (861)
...+|.|++||+.+|++++.+.++. ++.. ..+. ... + .-.-|||.|.+.+++..-...++|..+-.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3468999999999999999998887 7765 3333 110 1 12349999999999999999999987642
Q ss_pred --cEEEEEecc
Q 002974 427 --KQIKLEASR 435 (861)
Q Consensus 427 --r~IkVe~Ak 435 (861)
.+..|++|-
T Consensus 86 ~~~~~~VE~Ap 96 (176)
T PF03467_consen 86 NEYPAVVEFAP 96 (176)
T ss_dssp -EEEEEEEE-S
T ss_pred CCcceeEEEcc
Confidence 455666664
No 195
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=82.74 E-value=1.6 Score=42.72 Aligned_cols=100 Identities=18% Similarity=0.154 Sum_probs=70.1
Q ss_pred HHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCCCCCCCccc--CCcceEEec
Q 002974 292 SELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDA--NQGTLVVFN 369 (861)
Q Consensus 292 edL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k~~~~~k~~--~~~tLfVgN 369 (861)
..|.++....|.+.-..+ ..++..++|.+.++++++++ .....+.+..+.++.-.+.....+... ..--|-|.|
T Consensus 36 ~~l~~~W~~~~~~~i~~l---~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~g 111 (153)
T PF14111_consen 36 QELAKIWKLKGGVKIRDL---GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYG 111 (153)
T ss_pred HHHHHHhCCCCcEEEEEe---CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccceeccchhhhhcc
Confidence 344444444555544444 56899999999999999986 444557788888876665544333222 233466779
Q ss_pred ccCC-CcHHHHHHHhcccCcEEEEEeC
Q 002974 370 LDSS-VSTEELHQIFGIYGEIREIRDT 395 (861)
Q Consensus 370 Lp~s-vTeedLrelFskfGeI~sVrit 395 (861)
||.. .+++-|+++-+.+|++.++...
T Consensus 112 lP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 112 LPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred CCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 9986 6888899999999999999864
No 196
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=82.39 E-value=0.69 Score=53.56 Aligned_cols=78 Identities=17% Similarity=0.246 Sum_probs=65.5
Q ss_pred CCCCCcEEEEcCCCCCCc-HHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCC
Q 002974 273 GEHPSRTLFVRNINSNVE-DSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vT-EedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~ 351 (861)
-..+.+.|-+.-+|.... -++|...|.+||.|..|.+.- +---|.|+|.+..+|-+|.+ ..+..|++|.|+|.|-.+
T Consensus 368 ~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~-~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 368 AVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY-SSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccC-chhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 355688888888888775 588999999999999999833 34579999999999988874 899999999999999876
Q ss_pred C
Q 002974 352 K 352 (861)
Q Consensus 352 k 352 (861)
.
T Consensus 446 s 446 (526)
T KOG2135|consen 446 S 446 (526)
T ss_pred C
Confidence 3
No 197
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=82.14 E-value=0.75 Score=51.33 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=60.5
Q ss_pred CcEEEEcCCCCCCcHHHHH---HHhhcCCCEEEEEeCCCc------c--cEEEEEeCCHHHHHHHHHHcCccccCcceee
Q 002974 277 SRTLFVRNINSNVEDSELK---ALFEQFGDIRTIYTACKH------R--GFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (861)
Q Consensus 277 srtLfVgNLP~~vTEedL~---elFsqfG~I~svkitgks------r--GyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~ 345 (861)
.+-+||-+|+..+.++++. +.|.+||.|..|.+.+.. . --+||.|...++|..||..-+|..+.|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 4567888888887666554 489999999999763321 1 1489999999999999999999999999988
Q ss_pred eeecCCC
Q 002974 346 IHYSIPK 352 (861)
Q Consensus 346 V~~a~~k 352 (861)
..+...+
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 8877654
No 198
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=81.08 E-value=0.68 Score=51.65 Aligned_cols=79 Identities=16% Similarity=0.295 Sum_probs=62.0
Q ss_pred CcceEEecccCCCcHHHHH---HHhcccCcEEEEEeCCCC--------ccEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Q 002974 362 QGTLVVFNLDSSVSTEELH---QIFGIYGEIREIRDTQHK--------HNHKFIEFYDIRAAETALRTLNRSDVAGKQIK 430 (861)
Q Consensus 362 ~~tLfVgNLp~svTeedLr---elFskfGeI~sVritgks--------KGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~Ik 430 (861)
..-+||-+|+..+.++.+. +.|.+||.|..|...... ..-++|+|...++|..||...+|..+.|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 4567888888877665544 478999999998764322 11389999999999999999999999999999
Q ss_pred EEeccCCchh
Q 002974 431 LEASRPGGAR 440 (861)
Q Consensus 431 Ve~Akpk~~r 440 (861)
..+...+-..
T Consensus 157 a~~gttkycs 166 (327)
T KOG2068|consen 157 ASLGTTKYCS 166 (327)
T ss_pred HhhCCCcchh
Confidence 8888776533
No 199
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=80.57 E-value=1 Score=55.28 Aligned_cols=75 Identities=16% Similarity=0.232 Sum_probs=63.9
Q ss_pred cceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCee--CCcEEEEEeccCCc
Q 002974 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDV--AGKQIKLEASRPGG 438 (861)
Q Consensus 363 ~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I--~Gr~IkVe~Akpk~ 438 (861)
-+.++.|.+-..+-.-|..+|++||+|.++... +.-..|.|+|...+.|..|+.+|+|+++ .|-+.+|.+++.-.
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtl-r~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTL-RDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheec-ccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 456777778888889999999999999998742 3456899999999999999999999976 48899999998654
No 200
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=79.40 E-value=2.8 Score=46.42 Aligned_cols=70 Identities=14% Similarity=0.171 Sum_probs=51.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcc-eeeeeec
Q 002974 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRR-KLDIHYS 349 (861)
Q Consensus 277 srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr-~L~V~~a 349 (861)
..-|-|=++|+.- -..|..+|++||.|+..... ..-.+-+|.|.+.-+|++||. .+|+.|.|. .|-|..+
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~-~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP-SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPC 267 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecC-CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeec
Confidence 3445555666543 35677899999999988764 566699999999999999996 788888754 3444443
No 201
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=78.53 E-value=3.8 Score=48.55 Aligned_cols=97 Identities=12% Similarity=0.201 Sum_probs=66.7
Q ss_pred HHHHHHHHHHcCccccCcceeeeeecCCCCCCCCcccCCcceEEecccCCCcHHHHHHHhcc--cCcEEEEEeCCCCccE
Q 002974 324 IRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGI--YGEIREIRDTQHKHNH 401 (861)
Q Consensus 324 ~e~A~kALkaLnG~~L~Gr~L~V~~a~~k~~~~~k~~~~~tLfVgNLp~svTeedLrelFsk--fGeI~sVritgksKGf 401 (861)
++-...+|+..-+..+..+-.+|... ...+.|.++-|+..+-.|+++.+|+. +-++++|... . ..-
T Consensus 147 vdLI~Evlresp~VqvDekgekVrp~----------~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa-~-N~n 214 (684)
T KOG2591|consen 147 VDLIVEVLRESPNVQVDEKGEKVRPN----------HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFA-H-NDN 214 (684)
T ss_pred hHHHHHHHhcCCCceeccCccccccC----------cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeee-e-cCc
Confidence 34445566655665565555555322 22356788999999999999999986 7788888742 1 223
Q ss_pred EEEEECCHHHHHHHHHHhCC--CeeCCcEEEEE
Q 002974 402 KFIEFYDIRAAETALRTLNR--SDVAGKQIKLE 432 (861)
Q Consensus 402 AFVeF~d~eaA~kAL~~LNG--~~I~Gr~IkVe 432 (861)
=||+|++..+|+.|.+.|.. ++|.||+|..+
T Consensus 215 WyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 215 WYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 59999999999999987754 35667665543
No 202
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=77.94 E-value=1.3 Score=54.53 Aligned_cols=70 Identities=20% Similarity=0.358 Sum_probs=58.1
Q ss_pred EEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccC--cceeeeeecCC
Q 002974 281 FVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLR--RRKLDIHYSIP 351 (861)
Q Consensus 281 fVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~--Gr~L~V~~a~~ 351 (861)
++-|.+-..+-.-|..+|.+||.|.+.+. -+.-..|.|+|...+.|..|+++|+|+.+- |-+.+|.+++.
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wt-lr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWT-LRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhhee-cccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 34444455678889999999999999986 455678999999999999999999999854 88899988864
No 203
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=76.06 E-value=3.4 Score=38.10 Aligned_cols=67 Identities=16% Similarity=0.206 Sum_probs=44.8
Q ss_pred EEEEeCCHHHHHHHHHHcCc-cccCcceeeeeecCCCCCCC-----CcccCCcceEEecccCCCcHHHHHHHh
Q 002974 317 VMISYYDIRAARNAMKALQN-KPLRRRKLDIHYSIPKDNPS-----EKDANQGTLVVFNLDSSVSTEELHQIF 383 (861)
Q Consensus 317 AFVeF~d~e~A~kALkaLnG-~~L~Gr~L~V~~a~~k~~~~-----~k~~~~~tLfVgNLp~svTeedLrelF 383 (861)
|.|+|.+..-|++-++.-.. ..+.+..+.|...--..... ......++|.|.|||...++++|++..
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 68999999999999973222 23555555554332111111 123557899999999999999998764
No 204
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=75.28 E-value=2.9 Score=45.36 Aligned_cols=72 Identities=18% Similarity=0.254 Sum_probs=57.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE----eCCCcccEEEEEeCCHHHHHHHHHHcCcc----ccCcceeeeee
Q 002974 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIY----TACKHRGFVMISYYDIRAARNAMKALQNK----PLRRRKLDIHY 348 (861)
Q Consensus 277 srtLfVgNLP~~vTEedL~elFsqfG~I~svk----itgksrGyAFVeF~d~e~A~kALkaLnG~----~L~Gr~L~V~~ 348 (861)
...|||.||..-+..+.|...|..||+|.... ..++..+-++|.|...-.|.+|++.+.-. ...+++.-|..
T Consensus 31 ~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 31 HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred cceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 37899999999999999999999999876533 46778889999999999999999877332 23355555543
No 205
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=75.06 E-value=5.1 Score=35.22 Aligned_cols=59 Identities=22% Similarity=0.358 Sum_probs=35.5
Q ss_pred CCCcHHHHHHHhcccCc-----EEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 002974 372 SSVSTEELHQIFGIYGE-----IREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (861)
Q Consensus 372 ~svTeedLrelFskfGe-----I~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~A 434 (861)
..++..+|..++...+. |-.|++. ..|+||+-.. +.|..+++.|++..+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~---~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF---DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe---eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45777888888877643 4456664 4689999764 5889999999999999999999875
No 206
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=74.27 E-value=46 Score=37.12 Aligned_cols=147 Identities=18% Similarity=0.311 Sum_probs=93.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCC------------CcccEEEEEeCCHHHHHHHH----HHcCc
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTAC------------KHRGFVMISYYDIRAARNAM----KALQN 336 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitg------------ksrGyAFVeF~d~e~A~kAL----kaLnG 336 (861)
++--+|.|.+.|+..+++--.+...|.+||+|++|++-. +......+.|-+.+.|-... +.|..
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 445589999999999999999999999999999999511 23457899999998876543 22222
Q ss_pred --cccCcceeeeeecCCCCCC------CCcc----------------cCCcceEEecccCCCcHHH-HHHHh---cccCc
Q 002974 337 --KPLRRRKLDIHYSIPKDNP------SEKD----------------ANQGTLVVFNLDSSVSTEE-LHQIF---GIYGE 388 (861)
Q Consensus 337 --~~L~Gr~L~V~~a~~k~~~------~~k~----------------~~~~tLfVgNLp~svTeed-LrelF---skfGe 388 (861)
+.++...|.+.|..-+... .+.+ ...+.|.|.= ...+.+++ +.+.+ ..=+.
T Consensus 91 fK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF-~~~~~~~dl~~~kL~fL~~~~n 169 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEF-KDPVDKDDLIEKKLPFLKNSNN 169 (309)
T ss_pred HHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEe-cCccchhHHHHHhhhhhccCCC
Confidence 3467778888776521111 0111 1134555542 23343333 22222 22232
Q ss_pred ----EEEEEeCC-------CCccEEEEEECCHHHHHHHHHHhC
Q 002974 389 ----IREIRDTQ-------HKHNHKFIEFYDIRAAETALRTLN 420 (861)
Q Consensus 389 ----I~sVritg-------ksKGfAFVeF~d~eaA~kAL~~LN 420 (861)
|++|.+.. =+++||.+.|-+..-|.+.+..|.
T Consensus 170 ~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 170 KRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred ceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 34454421 136799999999999999998775
No 207
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=73.44 E-value=9.1 Score=33.51 Aligned_cols=55 Identities=22% Similarity=0.358 Sum_probs=43.9
Q ss_pred CCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Q 002974 373 SVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKL 431 (861)
Q Consensus 373 svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkV 431 (861)
.++-++++..+.+|+- .+|+. ...| =||.|.+.++|++|.+..+|+.+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~--d~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRD--DRTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEe--cCCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4677899999999975 33432 3445 489999999999999999999998887765
No 208
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.49 E-value=6.7 Score=44.90 Aligned_cols=52 Identities=13% Similarity=0.276 Sum_probs=43.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCC----EEEEEeCCCcccEEEEEeCCHHHHHHHHH
Q 002974 276 PSRTLFVRNINSNVEDSELKALFEQFGD----IRTIYTACKHRGFVMISYYDIRAARNAMK 332 (861)
Q Consensus 276 ~srtLfVgNLP~~vTEedL~elFsqfG~----I~svkitgksrGyAFVeF~d~e~A~kALk 332 (861)
=.+.|=|-++|.....+||..+|+.|+. |..|. .-.||-.|.+...|..||.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD-----dthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD-----DTHALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEee-----cceeEEeecchHHHHHHhh
Confidence 4678889999999999999999999973 44443 2378999999999999995
No 209
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=69.78 E-value=3.9 Score=49.34 Aligned_cols=71 Identities=20% Similarity=0.188 Sum_probs=62.9
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
.....++||+|+-..+.++-++.+...+|.|.+++... |||..|..+..+.+|+..++-..++|..+.+..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 34567899999999999999999999999999887542 999999999999999999999999988877765
No 210
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=67.46 E-value=4.1 Score=49.16 Aligned_cols=72 Identities=19% Similarity=0.179 Sum_probs=63.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
...+.-++||+||...+..+-++.+...||-|.+++... |+|..|.....+.+|+..++-..++|.++.+..
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 345688999999999999999999999999999887522 999999999999999999998889888887755
No 211
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=66.78 E-value=38 Score=32.53 Aligned_cols=63 Identities=14% Similarity=0.103 Sum_probs=44.7
Q ss_pred ceEEecccCCCcHHHHHHHhcccC-cEEEEEeCCCC---ccEEEEEECCHHHHHHHHHHhCCCeeCC
Q 002974 364 TLVVFNLDSSVSTEELHQIFGIYG-EIREIRDTQHK---HNHKFIEFYDIRAAETALRTLNRSDVAG 426 (861)
Q Consensus 364 tLfVgNLp~svTeedLrelFskfG-eI~sVritgks---KGfAFVeF~d~eaA~kAL~~LNG~~I~G 426 (861)
.+.+...|..++-++|..+.+.+- .|..+++.... +-.++++|.+.++|.+-.+..||+.++.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 444555555666677776666654 45556653332 3369999999999999999999998864
No 212
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=64.79 E-value=21 Score=31.26 Aligned_cols=55 Identities=15% Similarity=0.238 Sum_probs=42.4
Q ss_pred CCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeee
Q 002974 288 NVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (861)
Q Consensus 288 ~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V 346 (861)
.++-++++..+..|+-..-+ . ...| =||.|.+.++|+++.+..+|+.+..-.|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~I~-~--d~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDRIR-D--DRTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcceEE-e--cCCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 57789999999999854333 1 2334 488999999999999999998887666554
No 213
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=62.14 E-value=51 Score=31.69 Aligned_cols=65 Identities=20% Similarity=0.191 Sum_probs=45.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCC-CEEEEEe---CCCcccEEEEEeCCHHHHHHHHHHcCccccC
Q 002974 276 PSRTLFVRNINSNVEDSELKALFEQFG-DIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLR 340 (861)
Q Consensus 276 ~srtLfVgNLP~~vTEedL~elFsqfG-~I~svki---tgksrGyAFVeF~d~e~A~kALkaLnG~~L~ 340 (861)
....+.+...|..++.++|..+.+.+- .|..+++ ...++-.+.++|.+.++|+...+.+||+.+.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 344455555555566667776666554 3555554 2335557999999999999999999999875
No 214
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=61.59 E-value=25 Score=30.92 Aligned_cols=59 Identities=15% Similarity=0.287 Sum_probs=35.5
Q ss_pred CCCcHHHHHHHhhcCC-----CEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeec
Q 002974 287 SNVEDSELKALFEQFG-----DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (861)
Q Consensus 287 ~~vTEedL~elFsqfG-----~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a 349 (861)
..++..+|..++...+ .|-.+.+ ...|+||+-.. +.|+.+++.|++..+.|++++|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I---~~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDI---FDNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEE---eeeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3577888888887664 4666666 34589998865 4788999999999999999999764
No 215
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.22 E-value=66 Score=38.91 Aligned_cols=78 Identities=19% Similarity=0.315 Sum_probs=60.6
Q ss_pred CCCCCCcEEEEcCCCCC-CcHHHHHHHhhcC----CCEEEEEe---------------CCC-------------------
Q 002974 272 YGEHPSRTLFVRNINSN-VEDSELKALFEQF----GDIRTIYT---------------ACK------------------- 312 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~-vTEedL~elFsqf----G~I~svki---------------tgk------------------- 312 (861)
....++++|-|-|+.++ +...+|..+|..| |.|.+|.+ .+.
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~e 248 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDE 248 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchh
Confidence 34567999999999986 6778999999865 58888863 222
Q ss_pred ------------------cccEEEEEeCCHHHHHHHHHHcCccccC--cceeeeeec
Q 002974 313 ------------------HRGFVMISYYDIRAARNAMKALQNKPLR--RRKLDIHYS 349 (861)
Q Consensus 313 ------------------srGyAFVeF~d~e~A~kALkaLnG~~L~--Gr~L~V~~a 349 (861)
..-||.|+|.+++.|.+..+..+|..+. +..|.++|-
T Consensus 249 e~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 249 EEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 0128999999999999999999999987 455555553
No 216
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=43.10 E-value=21 Score=37.19 Aligned_cols=75 Identities=20% Similarity=0.279 Sum_probs=52.9
Q ss_pred cceEEecccCCCc-----HHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCc-EEEEEeccC
Q 002974 363 GTLVVFNLDSSVS-----TEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGK-QIKLEASRP 436 (861)
Q Consensus 363 ~tLfVgNLp~svT-----eedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr-~IkVe~Akp 436 (861)
+++.+.+++..+- ......+|.+|-+..-.++. ++.+..-|.|.+++.|..|...++...+.|+ .++..++++
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l-rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL-RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH-HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 4566777765442 23344556655544433332 3556788999999999999999999999998 888888886
Q ss_pred Cc
Q 002974 437 GG 438 (861)
Q Consensus 437 k~ 438 (861)
.-
T Consensus 90 ~~ 91 (193)
T KOG4019|consen 90 GH 91 (193)
T ss_pred CC
Confidence 53
No 217
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=42.30 E-value=12 Score=41.00 Aligned_cols=63 Identities=27% Similarity=0.500 Sum_probs=43.9
Q ss_pred CcEEEEcCCCCC------------CcHHHHHHHhhcCCCEEEEEe----------CCCcc-----cE---------EEEE
Q 002974 277 SRTLFVRNINSN------------VEDSELKALFEQFGDIRTIYT----------ACKHR-----GF---------VMIS 320 (861)
Q Consensus 277 srtLfVgNLP~~------------vTEedL~elFsqfG~I~svki----------tgksr-----Gy---------AFVe 320 (861)
..|||+.+||-. -++.-|+..|+.||.|+.|.+ +++.. || |||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 457888888854 357789999999999999863 34432 33 4566
Q ss_pred eCCHHHHHHHHHHcCcccc
Q 002974 321 YYDIRAARNAMKALQNKPL 339 (861)
Q Consensus 321 F~d~e~A~kALkaLnG~~L 339 (861)
|..-..-..|+.+|.|..+
T Consensus 229 fmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHhHHHHHHHHhcchH
Confidence 6666666677777777654
No 218
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=38.04 E-value=65 Score=29.59 Aligned_cols=56 Identities=7% Similarity=0.219 Sum_probs=42.3
Q ss_pred cceEEecccCCCcHHHHHHHhcc-cC-cEEEEEeCCCCcc--EEEEEECCHHHHHHHHHH
Q 002974 363 GTLVVFNLDSSVSTEELHQIFGI-YG-EIREIRDTQHKHN--HKFIEFYDIRAAETALRT 418 (861)
Q Consensus 363 ~tLfVgNLp~svTeedLrelFsk-fG-eI~sVritgksKG--fAFVeF~d~eaA~kAL~~ 418 (861)
.+-|+.-++...+..++++.++. || +|..|+......+ -|||.+.....|......
T Consensus 21 ~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 21 ENKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 35788888999999999999988 67 5777764322333 599999988888777553
No 219
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=36.53 E-value=95 Score=36.59 Aligned_cols=65 Identities=17% Similarity=0.265 Sum_probs=53.0
Q ss_pred CcceEEecccCCCcHHHHHHHhcccC-cEEEEEeC--CCCc-cEEEEEECCHHHHHHHHHHhCCCeeCC
Q 002974 362 QGTLVVFNLDSSVSTEELHQIFGIYG-EIREIRDT--QHKH-NHKFIEFYDIRAAETALRTLNRSDVAG 426 (861)
Q Consensus 362 ~~tLfVgNLp~svTeedLrelFskfG-eI~sVrit--gksK-GfAFVeF~d~eaA~kAL~~LNG~~I~G 426 (861)
.+.|+|=.+|..++-.||..++..+- .|..+++. +... -.++|+|.+.++|..-.+.+||+.|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 67899999999999999999998765 45556553 2233 359999999999999999999998864
No 220
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=35.74 E-value=94 Score=34.62 Aligned_cols=48 Identities=13% Similarity=0.168 Sum_probs=37.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCE-EEEEeCCCcccEEEEEeCCHH
Q 002974 277 SRTLFVRNINSNVEDSELKALFEQFGDI-RTIYTACKHRGFVMISYYDIR 325 (861)
Q Consensus 277 srtLfVgNLP~~vTEedL~elFsqfG~I-~svkitgksrGyAFVeF~d~e 325 (861)
..-||++||+.++.-.||+..+.+-|.+ .++.. ..++|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw-kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW-KGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee-ecCCcceeEecCCcc
Confidence 4569999999999999999988876643 22333 457889999998754
No 221
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=35.51 E-value=29 Score=36.25 Aligned_cols=75 Identities=19% Similarity=0.263 Sum_probs=55.0
Q ss_pred CcEEEEcCCCCCCcH-----HHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcc-eeeeeecC
Q 002974 277 SRTLFVRNINSNVED-----SELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRR-KLDIHYSI 350 (861)
Q Consensus 277 srtLfVgNLP~~vTE-----edL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr-~L~V~~a~ 350 (861)
..++++-+|+..+-. .....+|.+|-+.....+ -++.+...|.|.+++.|..|...++...+.|+ .++.-++.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~-lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ 88 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQL-LRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQ 88 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHH-HHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEcc
Confidence 456777788776532 234456776666555544 46777889999999999999999999999988 77776665
Q ss_pred CC
Q 002974 351 PK 352 (861)
Q Consensus 351 ~k 352 (861)
+.
T Consensus 89 ~~ 90 (193)
T KOG4019|consen 89 PG 90 (193)
T ss_pred CC
Confidence 43
No 222
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=34.85 E-value=83 Score=28.44 Aligned_cols=55 Identities=9% Similarity=0.248 Sum_probs=41.0
Q ss_pred ceEEecccCCCcHHHHHHHhcc-cC-cEEEEEeCCCCcc--EEEEEECCHHHHHHHHHH
Q 002974 364 TLVVFNLDSSVSTEELHQIFGI-YG-EIREIRDTQHKHN--HKFIEFYDIRAAETALRT 418 (861)
Q Consensus 364 tLfVgNLp~svTeedLrelFsk-fG-eI~sVritgksKG--fAFVeF~d~eaA~kAL~~ 418 (861)
+-|+..++...+..+|++.++. || +|..|+......+ -|||++..-..|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 5788889999999999999987 66 5677764222233 499999888777766543
No 223
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=33.04 E-value=21 Score=39.20 Aligned_cols=76 Identities=20% Similarity=0.407 Sum_probs=50.2
Q ss_pred CcceEEecccCC------------CcHHHHHHHhcccCcEEEEEe----------CCCC-----ccE---------EEEE
Q 002974 362 QGTLVVFNLDSS------------VSTEELHQIFGIYGEIREIRD----------TQHK-----HNH---------KFIE 405 (861)
Q Consensus 362 ~~tLfVgNLp~s------------vTeedLrelFskfGeI~sVri----------tgks-----KGf---------AFVe 405 (861)
..|||+.+||-. -+++-|+..|..||+|..|.+ +++. +|| |||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 468898888742 357889999999999988764 2222 233 4667
Q ss_pred ECCHHHHHHHHHHhCCCeeC----C----cEEEEEeccCC
Q 002974 406 FYDIRAAETALRTLNRSDVA----G----KQIKLEASRPG 437 (861)
Q Consensus 406 F~d~eaA~kAL~~LNG~~I~----G----r~IkVe~Akpk 437 (861)
|.....-..|+.+|.|..+. + -.++|.+.+.+
T Consensus 229 fmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 76666666777777666432 2 35666665544
No 224
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=32.03 E-value=1.4e+02 Score=35.37 Aligned_cols=66 Identities=20% Similarity=0.298 Sum_probs=53.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCC----CEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCc
Q 002974 276 PSRTLFVRNINSNVEDSELKALFEQFG----DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRR 341 (861)
Q Consensus 276 ~srtLfVgNLP~~vTEedL~elFsqfG----~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~G 341 (861)
+++.|+|=-+|..++-.||..+...+- .|+-|+..-..+-.+.|.|.+.++|....+.+||+.+..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 389999999999999999998876543 344444333455579999999999999999999998763
No 225
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.57 E-value=2.4e+02 Score=34.44 Aligned_cols=73 Identities=18% Similarity=0.303 Sum_probs=56.6
Q ss_pred CCcceEEecccCC-CcHHHHHHHhccc----CcEEEEEeCC---------------C-------------C---------
Q 002974 361 NQGTLVVFNLDSS-VSTEELHQIFGIY----GEIREIRDTQ---------------H-------------K--------- 398 (861)
Q Consensus 361 ~~~tLfVgNLp~s-vTeedLrelFskf----GeI~sVritg---------------k-------------s--------- 398 (861)
..++|-|-|+.|. +.-++|..+|..| |.|.+|.|++ . +
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 4578999999985 7889999998875 5899886521 1 0
Q ss_pred ------c---------cEEEEEECCHHHHHHHHHHhCCCeeCC--cEEEEEe
Q 002974 399 ------H---------NHKFIEFYDIRAAETALRTLNRSDVAG--KQIKLEA 433 (861)
Q Consensus 399 ------K---------GfAFVeF~d~eaA~kAL~~LNG~~I~G--r~IkVe~ 433 (861)
| -||.|+|.+.+.|.+....++|.++.. ..|-+.|
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 1 269999999999999999999999974 4555444
No 226
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.61 E-value=1.5e+02 Score=34.63 Aligned_cols=55 Identities=22% Similarity=0.347 Sum_probs=43.7
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcE-EEEEeCCCCccEEEEEECCHHHHHHHHH
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEI-REIRDTQHKHNHKFIEFYDIRAAETALR 417 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI-~sVritgksKGfAFVeF~d~eaA~kAL~ 417 (861)
-...|-|-++|.....+||...|+.|+.- -.|++. ....||-.|.+...|..||-
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWv--DdthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWV--DDTHALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEe--ecceeEEeecchHHHHHHhh
Confidence 35688999999999999999999999741 223332 23479999999999999998
No 227
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=22.03 E-value=1.2e+02 Score=33.43 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=36.9
Q ss_pred EEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCCCCCCCcccCCcceEEecccCCCcHHHHHHHhc
Q 002974 317 VMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFG 384 (861)
Q Consensus 317 AFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k~~~~~k~~~~~tLfVgNLp~svTeedLrelFs 384 (861)
|||.|++..+|..|++.+.... .+.+.+..|-+ .+-|+-.||.....+..+|.++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APe----------P~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPE----------PDDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCC----------cccccccccCCChHHHHHHHHHH
Confidence 7999999999999998554433 24445555532 23366677766666666666553
Done!