Query 002974
Match_columns 861
No_of_seqs 544 out of 2759
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 08:37:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002974.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002974hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 1.6E-30 5.6E-35 265.4 18.1 167 273-441 11-185 (213)
2 3md3_A Nuclear and cytoplasmic 100.0 2.1E-29 7.2E-34 242.3 19.8 157 278-436 1-166 (166)
3 3smz_A Protein raver-1, ribonu 100.0 7E-29 2.4E-33 262.0 21.0 195 275-487 20-228 (284)
4 1b7f_A Protein (SXL-lethal pro 100.0 8.9E-29 3E-33 239.3 19.9 155 276-434 2-168 (168)
5 1fxl_A Paraneoplastic encephal 100.0 1.3E-28 4.5E-33 237.0 20.2 155 276-434 1-167 (167)
6 1l3k_A Heterogeneous nuclear r 100.0 9E-29 3.1E-33 245.5 19.4 168 272-441 8-187 (196)
7 2ghp_A U4/U6 snRNA-associated 100.0 4.2E-29 1.4E-33 264.7 18.1 204 270-487 34-256 (292)
8 2qfj_A FBP-interacting repress 100.0 1.3E-28 4.5E-33 247.9 18.8 166 274-439 25-207 (216)
9 2adc_A Polypyrimidine tract-bi 100.0 4.2E-28 1.4E-32 250.2 21.4 165 273-437 30-228 (229)
10 2g4b_A Splicing factor U2AF 65 100.0 2.8E-28 9.5E-33 237.1 18.2 154 275-434 2-171 (172)
11 3pgw_A U1-A; protein-RNA compl 100.0 5.3E-28 1.8E-32 255.0 21.6 163 273-435 5-281 (282)
12 2cjk_A Nuclear polyadenylated 100.0 1.1E-28 3.8E-33 238.8 14.6 157 275-438 1-167 (167)
13 1fje_B Nucleolin RBD12, protei 100.0 2.5E-28 8.5E-33 238.9 17.1 162 273-437 9-174 (175)
14 3nmr_A Cugbp ELAV-like family 100.0 6.6E-28 2.2E-32 234.3 19.1 157 276-435 2-175 (175)
15 3smz_A Protein raver-1, ribonu 100.0 2.4E-28 8.3E-33 257.9 16.4 231 192-441 26-268 (284)
16 2yh0_A Splicing factor U2AF 65 100.0 6E-28 2E-32 240.0 18.2 162 276-439 3-196 (198)
17 1qm9_A Polypyrimidine tract-bi 100.0 5E-28 1.7E-32 242.0 16.1 162 276-437 2-197 (198)
18 3tyt_A Heterogeneous nuclear r 100.0 1.4E-27 5E-32 244.2 19.2 159 276-434 3-204 (205)
19 2ghp_A U4/U6 snRNA-associated 99.9 2.1E-27 7.2E-32 251.7 15.7 231 191-437 44-291 (292)
20 3sde_A Paraspeckle component 1 99.9 7.3E-26 2.5E-30 238.1 18.3 156 273-439 18-181 (261)
21 2i2y_A Fusion protein consists 99.8 1.2E-19 4.2E-24 175.4 12.9 127 311-438 10-149 (150)
22 2kn4_A Immunoglobulin G-bindin 99.8 7.3E-19 2.5E-23 170.7 15.5 130 310-439 9-152 (158)
23 4f25_A Polyadenylate-binding p 99.8 4.7E-19 1.6E-23 164.6 10.3 103 276-378 4-113 (115)
24 4f25_A Polyadenylate-binding p 99.7 7.8E-17 2.7E-21 149.6 10.0 105 361-466 4-112 (115)
25 3lqv_A PRE-mRNA branch site pr 99.7 1E-16 3.5E-21 147.7 7.8 104 273-388 4-109 (115)
26 4fxv_A ELAV-like protein 1; RN 99.7 2.4E-16 8.1E-21 143.2 10.0 76 276-351 18-98 (99)
27 4f02_A Polyadenylate-binding p 99.6 4.6E-16 1.6E-20 158.5 11.5 121 360-487 13-145 (213)
28 2qfj_A FBP-interacting repress 99.6 7.5E-16 2.5E-20 154.8 12.7 127 361-487 27-169 (216)
29 2lea_A Serine/arginine-rich sp 99.6 2.1E-16 7.2E-21 151.3 7.9 121 315-440 5-130 (135)
30 3md3_A Nuclear and cytoplasmic 99.6 8.2E-16 2.8E-20 147.4 11.6 118 363-487 1-131 (166)
31 4fxv_A ELAV-like protein 1; RN 99.6 5.3E-16 1.8E-20 140.9 9.8 75 362-436 19-98 (99)
32 1l3k_A Heterogeneous nuclear r 99.6 1.2E-15 4.2E-20 150.9 12.0 125 359-487 10-148 (196)
33 2hvz_A Splicing factor, argini 99.6 4.8E-16 1.7E-20 140.0 7.9 94 278-371 1-100 (101)
34 1fxl_A Paraneoplastic encephal 99.6 1.8E-15 6E-20 145.2 12.3 117 362-487 2-132 (167)
35 1b7f_A Protein (SXL-lethal pro 99.6 1.9E-15 6.5E-20 145.7 11.7 118 361-487 2-133 (168)
36 2do4_A Squamous cell carcinoma 99.6 4.3E-15 1.5E-19 133.6 12.6 83 272-354 12-98 (100)
37 2lxi_A RNA-binding protein 10; 99.6 6E-16 2.1E-20 138.2 6.8 79 277-355 1-86 (91)
38 1whw_A Hypothetical protein ri 99.6 4.7E-15 1.6E-19 132.9 12.6 83 273-355 4-91 (99)
39 3s8s_A Histone-lysine N-methyl 99.6 2.7E-15 9.1E-20 139.0 10.8 79 274-352 3-86 (110)
40 3r27_A HnRNP L, heterogeneous 99.6 2.4E-15 8.1E-20 138.1 10.1 80 273-353 17-98 (100)
41 1x5u_A Splicing factor 3B subu 99.6 6.3E-15 2.2E-19 133.4 12.4 84 272-355 10-98 (105)
42 1sjq_A Polypyrimidine tract-bi 99.6 3E-15 1E-19 138.5 10.4 83 273-356 12-96 (105)
43 2dgs_A DAZ-associated protein 99.6 7.1E-15 2.4E-19 131.9 12.5 82 273-355 6-92 (99)
44 2dgo_A Cytotoxic granule-assoc 99.6 8.1E-15 2.8E-19 135.0 13.2 84 272-355 10-98 (115)
45 3tyt_A Heterogeneous nuclear r 99.6 1.5E-15 5.2E-20 155.1 9.0 127 361-487 3-167 (205)
46 2dnm_A SRP46 splicing factor; 99.6 4.5E-15 1.5E-19 134.1 11.0 85 271-355 7-96 (103)
47 2dnz_A Probable RNA-binding pr 99.6 7.1E-15 2.4E-19 130.6 11.9 81 275-355 3-88 (95)
48 1rk8_A CG8781-PA, CG8781-PA pr 99.6 2.7E-15 9.3E-20 147.6 10.0 123 319-441 11-156 (165)
49 3md1_A Nuclear and cytoplasmic 99.6 5.1E-15 1.7E-19 128.1 10.5 77 277-353 1-82 (83)
50 3s8s_A Histone-lysine N-methyl 99.6 4.2E-15 1.4E-19 137.7 10.6 81 361-441 5-90 (110)
51 2dgv_A HnRNP M, heterogeneous 99.6 6.9E-15 2.4E-19 129.9 11.4 83 273-355 4-89 (92)
52 3bs9_A Nucleolysin TIA-1 isofo 99.6 3.9E-15 1.3E-19 129.9 9.7 78 275-352 4-86 (87)
53 2cph_A RNA binding motif prote 99.6 8.9E-15 3E-19 132.7 12.3 84 272-355 10-100 (107)
54 2d9p_A Polyadenylate-binding p 99.6 7.4E-15 2.5E-19 132.7 11.8 83 273-355 11-96 (103)
55 2cq0_A Eukaryotic translation 99.6 6.4E-15 2.2E-19 133.1 11.3 84 272-355 10-98 (103)
56 2ad9_A Polypyrimidine tract-bi 99.6 4.8E-15 1.7E-19 140.0 10.8 92 265-357 19-112 (119)
57 2cpz_A CUG triplet repeat RNA- 99.6 7.3E-15 2.5E-19 135.5 11.7 84 272-355 20-108 (115)
58 2cq3_A RNA-binding protein 9; 99.6 1.5E-14 5E-19 130.8 13.4 84 272-355 10-96 (103)
59 1x4a_A Splicing factor, argini 99.6 8.7E-15 3E-19 133.7 12.0 83 273-355 18-102 (109)
60 2e5h_A Zinc finger CCHC-type a 99.6 7.4E-15 2.5E-19 130.2 11.2 78 273-350 12-94 (94)
61 2cqi_A Nucleolysin TIAR; RNA r 99.6 1.2E-14 4.2E-19 131.2 12.7 84 272-355 10-96 (103)
62 1p27_B RNA-binding protein 8A; 99.6 6E-15 2E-19 133.8 10.7 82 272-353 18-104 (106)
63 2x1f_A MRNA 3'-END-processing 99.6 6.2E-15 2.1E-19 131.8 10.6 79 276-354 1-84 (96)
64 1wex_A Hypothetical protein (r 99.6 9.5E-15 3.2E-19 134.4 11.9 82 272-354 10-93 (104)
65 2dnh_A Bruno-like 5, RNA bindi 99.6 1.4E-14 4.9E-19 131.0 12.6 83 273-355 11-100 (105)
66 3mdf_A Peptidyl-prolyl CIS-tra 99.6 7.3E-15 2.5E-19 127.6 10.2 77 274-350 4-85 (85)
67 1x4h_A RNA-binding protein 28; 99.6 1.5E-14 5.3E-19 132.0 12.8 84 272-355 10-104 (111)
68 2cpf_A RNA binding motif prote 99.6 9E-15 3.1E-19 130.8 10.8 81 275-355 3-91 (98)
69 2cqc_A Arginine/serine-rich sp 99.6 9.1E-15 3.1E-19 129.6 10.6 80 272-351 10-94 (95)
70 3sde_A Paraspeckle component 1 99.6 6.2E-15 2.1E-19 154.8 11.2 114 359-487 19-139 (261)
71 1x5s_A Cold-inducible RNA-bind 99.6 8.3E-15 2.8E-19 132.0 10.3 83 273-355 8-95 (102)
72 1whw_A Hypothetical protein ri 99.6 1.2E-14 4.1E-19 130.2 11.2 81 360-440 6-91 (99)
73 1x5t_A Splicing factor 3B subu 99.6 5.8E-15 2E-19 131.3 9.0 81 275-355 3-89 (96)
74 1why_A Hypothetical protein ri 99.6 1.9E-14 6.3E-19 128.9 12.3 81 273-354 13-95 (97)
75 2cqb_A Peptidyl-prolyl CIS-tra 99.6 7.5E-15 2.6E-19 132.2 9.8 83 273-355 8-95 (102)
76 2ywk_A Putative RNA-binding pr 99.6 7.5E-15 2.6E-19 130.4 9.6 81 271-351 10-94 (95)
77 2do4_A Squamous cell carcinoma 99.6 1.8E-14 6E-19 129.6 12.0 82 358-439 13-98 (100)
78 3nmr_A Cugbp ELAV-like family 99.6 7.1E-15 2.4E-19 142.3 10.0 118 362-487 3-138 (175)
79 2cq1_A PTB-like protein L; RRM 99.6 1.6E-14 5.4E-19 132.3 11.7 83 272-355 10-94 (101)
80 2jrs_A RNA-binding protein 39; 99.6 1.1E-14 3.9E-19 133.8 10.8 82 272-353 21-107 (108)
81 1x4d_A Matrin 3; structural ge 99.6 7.6E-15 2.6E-19 134.9 9.4 80 273-353 11-93 (102)
82 2dgp_A Bruno-like 4, RNA bindi 99.6 1.2E-14 4.2E-19 131.7 10.7 84 272-355 8-99 (106)
83 2dgt_A RNA-binding protein 30; 99.6 1.5E-14 5E-19 128.3 10.8 82 271-355 4-85 (92)
84 2dnq_A RNA-binding protein 4B; 99.6 1.7E-14 5.8E-19 127.4 11.0 80 273-355 4-83 (90)
85 2kxn_B Transformer-2 protein h 99.6 1.2E-14 4.1E-19 138.2 10.6 83 271-353 40-127 (129)
86 1oo0_B CG8781-PA, drosophila Y 99.6 1.3E-14 4.4E-19 132.6 10.5 83 272-354 21-108 (110)
87 2dhg_A TRNA selenocysteine ass 99.5 1.8E-14 6.1E-19 130.2 11.2 83 273-355 5-93 (104)
88 1x4a_A Splicing factor, argini 99.5 2.2E-14 7.4E-19 131.1 11.8 81 359-439 19-101 (109)
89 2d9p_A Polyadenylate-binding p 99.5 1.8E-14 6.1E-19 130.2 11.1 84 358-441 11-97 (103)
90 2wbr_A GW182, gawky, LD47780P; 99.5 6.9E-15 2.4E-19 132.0 8.2 73 276-349 6-78 (89)
91 2ytc_A PRE-mRNA-splicing facto 99.5 1.3E-14 4.5E-19 126.2 9.9 78 272-350 7-85 (85)
92 1wi8_A EIF-4B, eukaryotic tran 99.5 2.2E-14 7.4E-19 130.0 11.7 83 271-355 9-97 (104)
93 3bs9_A Nucleolysin TIA-1 isofo 99.5 1.3E-14 4.6E-19 126.5 9.9 77 361-437 5-86 (87)
94 3pgw_S U1-70K; protein-RNA com 99.5 3E-15 1E-19 169.6 7.4 146 293-438 8-183 (437)
95 2lxi_A RNA-binding protein 10; 99.5 3.1E-15 1E-19 133.6 5.9 76 363-438 2-84 (91)
96 2cph_A RNA binding motif prote 99.5 2.4E-14 8.2E-19 129.8 11.8 83 358-440 11-100 (107)
97 3md1_A Nuclear and cytoplasmic 99.5 1.7E-14 5.8E-19 124.8 10.3 76 363-438 2-82 (83)
98 2dh8_A DAZ-associated protein 99.5 1.5E-14 5.2E-19 131.1 10.3 83 272-355 11-98 (105)
99 2cpj_A Non-POU domain-containi 99.5 1.3E-14 4.5E-19 130.3 9.8 81 273-354 11-91 (99)
100 2cqi_A Nucleolysin TIAR; RNA r 99.5 2.8E-14 9.5E-19 128.9 11.9 83 358-440 11-96 (103)
101 2cqd_A RNA-binding region cont 99.5 2.9E-14 9.9E-19 131.7 12.2 83 272-355 12-99 (116)
102 1x5u_A Splicing factor 3B subu 99.5 2.3E-14 7.8E-19 129.7 11.0 82 358-439 11-97 (105)
103 2wbr_A GW182, gawky, LD47780P; 99.5 7E-15 2.4E-19 132.0 7.4 74 362-436 7-80 (89)
104 2lkz_A RNA-binding protein 5; 99.5 5.8E-15 2E-19 133.7 7.0 79 273-351 5-94 (95)
105 2div_A TRNA selenocysteine ass 99.5 1.7E-14 5.7E-19 129.3 9.8 82 273-354 5-96 (99)
106 2cpz_A CUG triplet repeat RNA- 99.5 1.7E-14 5.9E-19 133.0 10.1 82 359-440 22-108 (115)
107 2cq0_A Eukaryotic translation 99.5 1.9E-14 6.5E-19 130.0 10.1 82 359-440 12-98 (103)
108 1fjc_A Nucleolin RBD2, protein 99.5 1.1E-14 3.7E-19 129.8 8.3 82 273-354 12-93 (96)
109 2do0_A HnRNP M, heterogeneous 99.5 4.6E-14 1.6E-18 129.6 12.8 82 273-354 11-96 (114)
110 3mdf_A Peptidyl-prolyl CIS-tra 99.5 2.3E-14 7.8E-19 124.5 10.1 76 360-435 5-85 (85)
111 3ex7_B RNA-binding protein 8A; 99.5 2.1E-14 7.1E-19 134.4 10.5 85 271-355 16-105 (126)
112 2a3j_A U1 small nuclear ribonu 99.5 2.3E-14 7.8E-19 136.6 10.9 82 273-354 25-112 (127)
113 2dng_A Eukaryotic translation 99.5 3.6E-14 1.2E-18 128.4 11.7 82 272-355 10-96 (103)
114 2la4_A Nuclear and cytoplasmic 99.5 1.3E-14 4.4E-19 130.6 8.7 77 275-352 25-101 (101)
115 1sjq_A Polypyrimidine tract-bi 99.5 9.3E-15 3.2E-19 135.3 7.9 81 360-441 14-96 (105)
116 3p5t_L Cleavage and polyadenyl 99.5 5.8E-15 2E-19 130.8 6.3 77 278-354 2-85 (90)
117 2cqc_A Arginine/serine-rich sp 99.5 3.1E-14 1.1E-18 126.2 11.0 78 359-436 12-94 (95)
118 2khc_A Testis-specific RNP-typ 99.5 2.3E-14 7.8E-19 132.6 10.5 79 272-350 35-118 (118)
119 2dnz_A Probable RNA-binding pr 99.5 2.8E-14 9.5E-19 126.7 10.6 80 361-440 4-88 (95)
120 2fy1_A RNA-binding motif prote 99.5 2.4E-14 8.1E-19 133.4 10.6 82 274-355 4-89 (116)
121 2dgs_A DAZ-associated protein 99.5 3.2E-14 1.1E-18 127.6 11.1 81 359-440 7-92 (99)
122 1x4h_A RNA-binding protein 28; 99.5 4.2E-14 1.4E-18 129.0 12.1 82 359-440 12-104 (111)
123 4a8x_A RNA-binding protein wit 99.5 2E-14 6.7E-19 125.5 9.4 78 276-353 3-86 (88)
124 2dgo_A Cytotoxic granule-assoc 99.5 3.6E-14 1.2E-18 130.7 11.6 83 359-441 12-99 (115)
125 1wf1_A RNA-binding protein RAL 99.5 1.4E-14 4.9E-19 132.7 8.9 96 339-438 5-101 (110)
126 2g4b_A Splicing factor U2AF 65 99.5 1.7E-14 5.7E-19 139.9 9.8 115 362-487 4-138 (172)
127 2dnh_A Bruno-like 5, RNA bindi 99.5 3.5E-14 1.2E-18 128.5 11.3 83 359-441 12-101 (105)
128 2cqb_A Peptidyl-prolyl CIS-tra 99.5 2E-14 6.7E-19 129.5 9.6 82 359-440 9-95 (102)
129 2dgu_A Heterogeneous nuclear r 99.5 3.9E-14 1.3E-18 128.3 11.5 80 273-355 7-86 (103)
130 3ns6_A Eukaryotic translation 99.5 6.4E-15 2.2E-19 133.4 6.4 78 275-352 4-93 (100)
131 2x1f_A MRNA 3'-END-processing 99.5 3.6E-14 1.2E-18 126.7 11.1 79 362-440 2-85 (96)
132 2cq3_A RNA-binding protein 9; 99.5 4.8E-14 1.7E-18 127.3 12.1 83 358-440 11-96 (103)
133 1p27_B RNA-binding protein 8A; 99.5 1.9E-14 6.4E-19 130.5 9.3 80 359-438 20-104 (106)
134 2fc9_A NCL protein; structure 99.5 2.4E-14 8.3E-19 128.9 10.0 83 273-355 11-94 (101)
135 2e5j_A Methenyltetrahydrofolat 99.5 2.5E-14 8.5E-19 128.2 10.0 81 273-353 15-95 (97)
136 2cpe_A RNA-binding protein EWS 99.5 2.3E-14 8E-19 131.5 10.1 83 273-355 11-106 (113)
137 1u6f_A Tcubp1, RNA-binding pro 99.5 3.5E-14 1.2E-18 135.0 11.6 83 273-355 38-125 (139)
138 2la6_A RNA-binding protein FUS 99.5 2.5E-14 8.6E-19 128.5 10.0 79 272-350 8-99 (99)
139 2e5h_A Zinc finger CCHC-type a 99.5 5.2E-14 1.8E-18 124.7 11.9 77 359-435 13-94 (94)
140 2dnq_A RNA-binding protein 4B; 99.5 2.7E-14 9.3E-19 126.1 9.9 77 360-439 6-82 (90)
141 1x4e_A RNA binding motif, sing 99.5 1.5E-14 5E-19 126.1 8.1 76 275-350 3-83 (85)
142 1why_A Hypothetical protein ri 99.5 3.3E-14 1.1E-18 127.3 10.6 79 360-439 15-95 (97)
143 3r27_A HnRNP L, heterogeneous 99.5 2.2E-14 7.7E-19 131.6 9.7 78 360-438 19-98 (100)
144 1oo0_B CG8781-PA, drosophila Y 99.5 2.8E-14 9.5E-19 130.4 10.3 82 359-440 23-109 (110)
145 2err_A Ataxin-2-binding protei 99.5 1.7E-14 5.8E-19 132.6 8.9 81 272-352 24-107 (109)
146 1nu4_A U1A RNA binding domain; 99.5 1.6E-14 5.3E-19 128.8 8.4 82 273-354 4-91 (97)
147 1whx_A Hypothetical protein ri 99.5 1.5E-14 5.2E-19 133.7 8.6 78 274-352 7-84 (111)
148 1p1t_A Cleavage stimulation fa 99.5 8.4E-15 2.9E-19 132.2 6.7 82 273-354 4-90 (104)
149 3ulh_A THO complex subunit 4; 99.5 3.2E-14 1.1E-18 129.2 10.5 79 272-350 24-106 (107)
150 1x4c_A Splicing factor, argini 99.5 6E-14 2.1E-18 128.4 12.2 81 273-355 11-96 (108)
151 2nlw_A Eukaryotic translation 99.5 3.5E-14 1.2E-18 129.5 10.6 80 273-352 11-100 (105)
152 1fje_B Nucleolin RBD12, protei 99.5 5.9E-15 2E-19 144.0 5.8 120 359-487 10-138 (175)
153 4a8x_A RNA-binding protein wit 99.5 2.7E-14 9.3E-19 124.6 9.4 78 361-438 3-86 (88)
154 1x4f_A Matrin 3; structural ge 99.5 1.8E-14 6.2E-19 134.7 8.7 80 274-354 22-104 (112)
155 2cpd_A Apobec-1 stimulating pr 99.5 7.4E-14 2.5E-18 125.4 12.4 79 273-354 11-91 (99)
156 2dgx_A KIAA0430 protein; RRM d 99.5 3.8E-14 1.3E-18 127.1 10.4 79 360-438 7-91 (96)
157 2dnp_A RNA-binding protein 14; 99.5 4.5E-14 1.5E-18 124.7 10.7 80 273-355 5-84 (90)
158 2dgx_A KIAA0430 protein; RRM d 99.5 4.4E-14 1.5E-18 126.7 10.7 81 275-355 7-93 (96)
159 2jvr_A Nucleolar protein 3; RN 99.5 2E-14 6.9E-19 133.9 8.7 78 361-438 27-106 (111)
160 2dnm_A SRP46 splicing factor; 99.5 3E-14 1E-18 128.7 9.6 81 359-439 10-95 (103)
161 1x5s_A Cold-inducible RNA-bind 99.5 2.2E-14 7.5E-19 129.2 8.7 82 359-440 9-95 (102)
162 2cjk_A Nuclear polyadenylated 99.5 1.1E-14 3.8E-19 140.5 7.0 116 361-487 2-131 (167)
163 2cpf_A RNA binding motif prote 99.5 2.5E-14 8.5E-19 127.9 8.8 79 361-439 4-90 (98)
164 2cq1_A PTB-like protein L; RRM 99.5 5.4E-14 1.8E-18 128.8 11.2 80 360-440 13-94 (101)
165 2cpx_A Hypothetical protein FL 99.5 5.4E-14 1.9E-18 129.3 11.2 83 273-355 21-108 (115)
166 2dgv_A HnRNP M, heterogeneous 99.5 3.1E-14 1E-18 125.7 9.1 80 360-439 6-88 (92)
167 2dnp_A RNA-binding protein 14; 99.5 4.9E-14 1.7E-18 124.4 10.3 78 359-439 6-83 (90)
168 2dis_A Unnamed protein product 99.5 5.5E-14 1.9E-18 128.1 10.9 83 274-356 5-96 (109)
169 2lkz_A RNA-binding protein 5; 99.5 1.2E-14 4E-19 131.7 6.3 76 361-436 8-94 (95)
170 2m2b_A RNA-binding protein 10; 99.5 2.3E-14 7.8E-19 135.8 8.6 83 272-355 18-111 (131)
171 1wf1_A RNA-binding protein RAL 99.5 6.6E-14 2.3E-18 128.3 11.4 78 273-353 23-101 (110)
172 3s7r_A Heterogeneous nuclear r 99.5 4.8E-14 1.6E-18 123.4 10.0 76 273-349 7-87 (87)
173 2dgt_A RNA-binding protein 30; 99.5 5.4E-14 1.9E-18 124.6 10.4 78 359-439 7-84 (92)
174 1fjc_A Nucleolin RBD2, protein 99.5 2.4E-14 8.3E-19 127.5 8.1 82 358-439 12-93 (96)
175 2kvi_A Nuclear polyadenylated 99.5 3E-14 1E-18 127.6 8.8 80 273-355 6-86 (96)
176 2ywk_A Putative RNA-binding pr 99.5 4.1E-14 1.4E-18 125.6 9.6 78 359-436 13-94 (95)
177 1x4g_A Nucleolysin TIAR; struc 99.5 5.5E-14 1.9E-18 128.6 10.7 82 273-355 21-102 (109)
178 1u6f_A Tcubp1, RNA-binding pro 99.5 5.3E-14 1.8E-18 133.7 11.0 82 359-440 39-125 (139)
179 1x5t_A Splicing factor 3B subu 99.5 2.4E-14 8.2E-19 127.4 7.9 80 361-440 4-89 (96)
180 2krb_A Eukaryotic translation 99.5 3.1E-14 1.1E-18 123.5 8.4 71 277-347 1-81 (81)
181 2cqh_A IGF-II mRNA-binding pro 99.5 2.3E-14 7.9E-19 127.1 7.8 80 274-355 5-86 (93)
182 2dgp_A Bruno-like 4, RNA bindi 99.5 3.8E-14 1.3E-18 128.5 9.3 82 358-439 9-98 (106)
183 2adc_A Polypyrimidine tract-bi 99.5 4.3E-14 1.5E-18 145.5 10.9 129 359-487 31-193 (229)
184 2fc8_A NCL protein; structure 99.5 4.9E-14 1.7E-18 126.9 9.9 83 273-355 11-95 (102)
185 2cpi_A CCR4-NOT transcription 99.5 3.3E-14 1.1E-18 131.0 9.0 82 273-354 11-103 (111)
186 3ucg_A Polyadenylate-binding p 99.5 4.5E-14 1.5E-18 123.7 9.4 76 276-352 5-85 (89)
187 2yh0_A Splicing factor U2AF 65 99.5 2.5E-14 8.4E-19 141.8 8.7 125 361-487 3-158 (198)
188 2cqg_A TDP-43, TAR DNA-binding 99.5 1.2E-13 4E-18 124.8 12.4 82 272-355 10-96 (103)
189 1x5p_A Negative elongation fac 99.5 1.2E-13 4E-18 123.9 12.2 80 273-355 11-90 (97)
190 2xnq_A Nuclear polyadenylated 99.5 7E-14 2.4E-18 126.0 10.9 77 273-352 18-95 (97)
191 2jrs_A RNA-binding protein 39; 99.5 5.2E-14 1.8E-18 129.4 10.2 81 358-438 22-107 (108)
192 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 8.9E-14 3.1E-18 131.6 12.1 77 273-349 59-140 (140)
193 2ytc_A PRE-mRNA-splicing facto 99.5 5.6E-14 1.9E-18 122.2 9.9 77 358-435 8-85 (85)
194 1wi8_A EIF-4B, eukaryotic tran 99.5 6.1E-14 2.1E-18 127.1 10.4 80 359-440 12-97 (104)
195 1wex_A Hypothetical protein (r 99.5 5.3E-14 1.8E-18 129.4 10.0 79 360-439 13-93 (104)
196 1x4d_A Matrin 3; structural ge 99.5 3.7E-14 1.2E-18 130.4 9.0 78 360-438 13-93 (102)
197 2j76_E EIF-4B, EIF4B, eukaryot 99.5 3E-14 1E-18 128.7 8.2 79 273-353 15-99 (100)
198 1h2v_Z 20 kDa nuclear CAP bind 99.5 7.2E-14 2.5E-18 135.7 11.5 82 273-354 35-121 (156)
199 2dgu_A Heterogeneous nuclear r 99.5 6.3E-14 2.2E-18 126.9 10.4 79 360-441 9-87 (103)
200 2dgw_A Probable RNA-binding pr 99.5 6.7E-14 2.3E-18 123.6 10.3 79 273-353 6-88 (91)
201 3p5t_L Cleavage and polyadenyl 99.5 1.1E-14 3.7E-19 129.0 5.2 77 363-439 2-85 (90)
202 1x4g_A Nucleolysin TIAR; struc 99.5 5.5E-14 1.9E-18 128.6 9.9 80 360-440 23-102 (109)
203 2jvo_A Nucleolar protein 3; nu 99.5 3.8E-14 1.3E-18 130.5 8.9 80 272-354 26-105 (108)
204 2cqp_A RNA-binding protein 12; 99.5 3.1E-14 1.1E-18 127.3 8.0 80 273-352 11-95 (98)
205 2jvr_A Nucleolar protein 3; RN 99.5 3.3E-14 1.1E-18 132.5 8.5 79 274-352 25-105 (111)
206 2la4_A Nuclear and cytoplasmic 99.5 2.5E-14 8.7E-19 128.7 7.5 76 361-437 26-101 (101)
207 2jvo_A Nucleolar protein 3; nu 99.5 3.9E-14 1.3E-18 130.4 8.7 81 357-440 26-106 (108)
208 2kxn_B Transformer-2 protein h 99.5 6.3E-14 2.2E-18 133.2 10.4 80 359-438 43-127 (129)
209 2e5j_A Methenyltetrahydrofolat 99.5 4.3E-14 1.5E-18 126.7 8.7 80 359-438 16-95 (97)
210 1x5o_A RNA binding motif, sing 99.5 1.6E-13 5.4E-18 126.2 12.7 80 273-352 21-112 (114)
211 2cpi_A CCR4-NOT transcription 99.5 7.9E-14 2.7E-18 128.4 10.7 81 358-438 11-102 (111)
212 1x4c_A Splicing factor, argini 99.5 8.2E-14 2.8E-18 127.6 10.6 78 360-439 13-95 (108)
213 2xnq_A Nuclear polyadenylated 99.5 1E-13 3.4E-18 125.0 11.0 77 359-438 19-96 (97)
214 2err_A Ataxin-2-binding protei 99.5 4.6E-14 1.6E-18 129.7 8.9 82 357-438 24-108 (109)
215 2ad9_A Polypyrimidine tract-bi 99.5 3.7E-14 1.3E-18 134.0 8.4 81 360-441 29-111 (119)
216 2khc_A Testis-specific RNP-typ 99.5 6.4E-14 2.2E-18 129.6 9.9 77 359-435 37-118 (118)
217 2kt5_A RNA and export factor-b 99.5 2E-13 6.8E-18 127.7 13.3 83 273-355 31-117 (124)
218 2cpd_A Apobec-1 stimulating pr 99.5 1.4E-13 4.8E-18 123.6 11.9 78 359-439 12-91 (99)
219 2hvz_A Splicing factor, argini 99.5 2.4E-14 8.3E-19 128.9 6.8 77 363-439 1-77 (101)
220 2rs2_A Musashi-1, RNA-binding 99.5 7E-14 2.4E-18 128.6 10.0 82 273-355 21-107 (109)
221 2cq4_A RNA binding motif prote 99.5 2.2E-14 7.5E-19 132.1 6.6 80 360-440 23-107 (114)
222 3ns6_A Eukaryotic translation 99.5 1.7E-14 5.9E-19 130.6 5.8 77 362-438 6-94 (100)
223 2i2y_A Fusion protein consists 99.5 1E-13 3.6E-18 133.7 11.6 80 273-352 69-148 (150)
224 3pgw_A U1-A; protein-RNA compl 99.5 8.9E-14 3E-18 146.3 12.0 80 359-438 6-91 (282)
225 1p1t_A Cleavage stimulation fa 99.5 2.6E-14 8.8E-19 129.0 6.8 82 360-441 6-92 (104)
226 2cqd_A RNA-binding region cont 99.5 7.9E-14 2.7E-18 128.7 10.2 81 357-438 12-97 (116)
227 2cpj_A Non-POU domain-containi 99.5 6.6E-14 2.2E-18 125.7 9.2 79 359-438 12-90 (99)
228 2la6_A RNA-binding protein FUS 99.5 8.5E-14 2.9E-18 125.0 10.0 77 359-435 10-99 (99)
229 2kn4_A Immunoglobulin G-bindin 99.5 1.2E-13 4.2E-18 133.8 11.9 83 273-355 66-153 (158)
230 3ucg_A Polyadenylate-binding p 99.5 8.2E-14 2.8E-18 122.0 9.6 76 361-437 5-85 (89)
231 2cpe_A RNA-binding protein EWS 99.5 6.2E-14 2.1E-18 128.7 9.2 83 358-440 11-106 (113)
232 2do0_A HnRNP M, heterogeneous 99.5 1.4E-13 4.8E-18 126.4 11.5 80 359-438 12-95 (114)
233 1wg5_A Heterogeneous nuclear r 99.5 1.1E-13 3.9E-18 125.9 10.8 81 273-354 11-96 (104)
234 2ek1_A RNA-binding protein 12; 99.5 2.3E-14 8E-19 127.2 6.1 77 274-350 12-93 (95)
235 2fy1_A RNA-binding motif prote 99.5 6.1E-14 2.1E-18 130.6 9.2 79 360-438 5-87 (116)
236 2lea_A Serine/arginine-rich sp 99.5 3.3E-14 1.1E-18 136.1 7.5 86 270-355 40-130 (135)
237 1s79_A Lupus LA protein; RRM, 99.5 6.3E-14 2.2E-18 128.4 9.0 78 273-351 7-88 (103)
238 2dng_A Eukaryotic translation 99.5 1.3E-13 4.5E-18 124.7 10.9 80 359-440 12-96 (103)
239 2dhg_A TRNA selenocysteine ass 99.5 6.2E-14 2.1E-18 126.7 8.6 82 360-441 7-94 (104)
240 2fc9_A NCL protein; structure 99.5 7.9E-14 2.7E-18 125.5 9.3 82 358-439 11-93 (101)
241 2fc8_A NCL protein; structure 99.5 1.4E-13 4.6E-18 124.0 10.8 84 357-440 10-95 (102)
242 3ex7_B RNA-binding protein 8A; 99.5 7.3E-14 2.5E-18 130.6 9.4 82 359-440 19-105 (126)
243 3n9u_C Cleavage and polyadenyl 99.5 5.5E-14 1.9E-18 138.1 8.8 78 275-352 53-137 (156)
244 2jwn_A Embryonic polyadenylate 99.5 1.8E-14 6.3E-19 134.3 5.0 78 360-438 34-116 (124)
245 2a3j_A U1 small nuclear ribonu 99.5 9.6E-14 3.3E-18 132.2 10.1 82 360-441 27-114 (127)
246 1h2v_Z 20 kDa nuclear CAP bind 99.5 1.3E-13 4.4E-18 134.0 11.2 81 360-440 37-122 (156)
247 1whx_A Hypothetical protein ri 99.5 7.6E-14 2.6E-18 129.0 9.0 77 361-438 9-85 (111)
248 2nlw_A Eukaryotic translation 99.5 1E-13 3.5E-18 126.4 9.7 80 359-438 12-101 (105)
249 2cqh_A IGF-II mRNA-binding pro 99.5 4.8E-14 1.6E-18 125.1 6.9 79 360-440 6-86 (93)
250 3ulh_A THO complex subunit 4; 99.5 1.5E-13 5.1E-18 124.8 10.3 76 360-435 27-106 (107)
251 1nu4_A U1A RNA binding domain; 99.5 7.6E-14 2.6E-18 124.3 8.2 81 360-440 6-92 (97)
252 2div_A TRNA selenocysteine ass 99.5 7.3E-14 2.5E-18 125.1 8.1 79 360-438 7-95 (99)
253 2cpx_A Hypothetical protein FL 99.5 9E-14 3.1E-18 127.8 8.8 81 360-440 23-108 (115)
254 2mss_A Protein (musashi1); RNA 99.5 5E-14 1.7E-18 119.9 6.6 70 279-349 1-75 (75)
255 3lqv_A PRE-mRNA branch site pr 99.5 1.2E-13 4E-18 127.2 9.4 81 361-441 7-89 (115)
256 2kt5_A RNA and export factor-b 99.5 2.5E-13 8.5E-18 127.0 11.8 79 360-438 33-115 (124)
257 1wg1_A KIAA1579 protein, homol 99.5 6.4E-14 2.2E-18 123.5 7.3 76 275-352 3-78 (88)
258 2cq4_A RNA binding motif prote 99.5 4.7E-14 1.6E-18 129.9 6.7 78 274-352 22-104 (114)
259 3n9u_C Cleavage and polyadenyl 99.5 8.3E-14 2.9E-18 136.8 8.9 81 361-441 54-141 (156)
260 2ki2_A SS-DNA binding protein 99.5 2.5E-14 8.6E-19 125.9 4.6 76 278-354 2-82 (90)
261 1x5p_A Negative elongation fac 99.5 2.6E-13 8.9E-18 121.6 11.3 78 360-440 13-90 (97)
262 3zzy_A Polypyrimidine tract-bi 99.5 1.2E-13 4.1E-18 132.4 9.5 76 363-438 29-107 (130)
263 1rk8_A CG8781-PA, CG8781-PA pr 99.5 1.4E-13 4.9E-18 135.3 10.2 85 271-355 66-155 (165)
264 2kvi_A Nuclear polyadenylated 99.5 8E-14 2.8E-18 124.8 7.7 77 360-439 8-85 (96)
265 3s7r_A Heterogeneous nuclear r 99.5 1.8E-13 6.1E-18 119.7 9.7 75 359-434 8-87 (87)
266 2dis_A Unnamed protein product 99.5 1.3E-13 4.5E-18 125.5 9.1 80 360-439 6-94 (109)
267 2cqp_A RNA-binding protein 12; 99.5 9.5E-14 3.3E-18 124.1 8.0 79 360-438 13-96 (98)
268 1qm9_A Polypyrimidine tract-bi 99.5 6.3E-14 2.1E-18 139.8 7.4 126 362-487 3-162 (198)
269 2rs2_A Musashi-1, RNA-binding 99.5 1.8E-13 6.1E-18 126.0 9.9 82 358-440 21-107 (109)
270 2dh8_A DAZ-associated protein 99.5 1E-13 3.5E-18 125.6 8.0 82 358-440 12-98 (105)
271 1x4b_A Heterogeneous nuclear r 99.5 1.3E-13 4.5E-18 127.3 8.8 81 274-355 24-109 (116)
272 1x4b_A Heterogeneous nuclear r 99.4 8.4E-14 2.9E-18 128.6 7.4 81 359-440 24-109 (116)
273 1fj7_A Nucleolin RBD1, protein 99.4 4E-14 1.4E-18 127.4 5.1 81 274-355 14-98 (101)
274 1s79_A Lupus LA protein; RRM, 99.4 6.2E-14 2.1E-18 128.5 6.4 78 359-437 8-89 (103)
275 2e44_A Insulin-like growth fac 99.4 3E-13 1E-17 120.4 10.7 80 274-353 12-93 (96)
276 1uaw_A Mouse-musashi-1; RNP-ty 99.4 5E-14 1.7E-18 120.1 5.3 71 278-349 1-76 (77)
277 2j76_E EIF-4B, EIF4B, eukaryot 99.4 9E-14 3.1E-18 125.6 7.1 78 359-438 16-99 (100)
278 2e5g_A U6 snRNA-specific termi 99.4 5.1E-13 1.8E-17 119.0 11.8 81 274-355 5-85 (94)
279 2e44_A Insulin-like growth fac 99.4 4.2E-13 1.4E-17 119.5 11.2 79 360-438 13-93 (96)
280 1x5o_A RNA binding motif, sing 99.4 3.5E-13 1.2E-17 123.8 11.0 80 359-438 22-113 (114)
281 3egn_A RNA-binding protein 40; 99.4 1.9E-13 6.6E-18 130.8 9.6 82 274-355 42-133 (143)
282 2ek1_A RNA-binding protein 12; 99.4 7.9E-14 2.7E-18 123.8 6.1 76 361-436 14-94 (95)
283 2mss_A Protein (musashi1); RNA 99.4 9.6E-14 3.3E-18 118.1 6.4 70 364-434 1-75 (75)
284 1wg1_A KIAA1579 protein, homol 99.4 1.6E-13 5.5E-18 120.9 7.9 76 361-438 4-79 (88)
285 2jwn_A Embryonic polyadenylate 99.4 2.7E-13 9.3E-18 126.4 9.9 78 275-353 34-116 (124)
286 1wel_A RNA-binding protein 12; 99.4 7.7E-14 2.6E-18 130.8 6.1 79 273-352 21-104 (124)
287 1sjr_A Polypyrimidine tract-bi 99.4 3.8E-13 1.3E-17 133.7 11.1 81 274-354 43-126 (164)
288 3zzy_A Polypyrimidine tract-bi 99.4 2.3E-13 7.9E-18 130.5 9.2 80 275-354 26-108 (130)
289 1x4f_A Matrin 3; structural ge 99.4 1.1E-13 3.9E-18 129.3 6.8 78 360-438 23-103 (112)
290 1x4e_A RNA binding motif, sing 99.4 6E-14 2E-18 122.2 4.6 76 361-436 4-84 (85)
291 2ki2_A SS-DNA binding protein 99.4 5.7E-14 1.9E-18 123.7 4.5 75 363-438 2-81 (90)
292 2m2b_A RNA-binding protein 10; 99.4 8.3E-14 2.8E-18 131.9 6.0 80 358-438 19-109 (131)
293 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 4.3E-13 1.5E-17 126.8 10.9 76 359-434 60-140 (140)
294 2cqg_A TDP-43, TAR DNA-binding 99.4 6.9E-13 2.4E-17 119.7 11.7 79 359-439 12-95 (103)
295 2krb_A Eukaryotic translation 99.4 1.2E-13 4.3E-18 119.6 6.5 69 363-431 2-80 (81)
296 2cpy_A RNA-binding protein 12; 99.4 1.2E-13 4.3E-18 127.7 6.8 79 273-352 11-94 (114)
297 2dgw_A Probable RNA-binding pr 99.4 3.6E-13 1.2E-17 119.0 9.2 77 360-438 8-88 (91)
298 2cq2_A Hypothetical protein LO 99.4 3.5E-13 1.2E-17 126.5 9.6 79 273-352 21-106 (114)
299 2hzc_A Splicing factor U2AF 65 99.4 3.2E-13 1.1E-17 117.7 8.5 73 274-348 3-86 (87)
300 3d2w_A TAR DNA-binding protein 99.4 3.1E-13 1E-17 120.2 8.5 78 273-354 7-86 (89)
301 1sjr_A Polypyrimidine tract-bi 99.4 3.1E-13 1.1E-17 134.3 9.2 77 362-438 46-125 (164)
302 2xs2_A Deleted in azoospermia- 99.4 1E-13 3.6E-18 124.9 5.2 81 272-354 4-88 (102)
303 1wez_A HnRNP H', FTP-3, hetero 99.4 3.3E-13 1.1E-17 123.1 8.5 80 273-354 11-94 (102)
304 1uaw_A Mouse-musashi-1; RNP-ty 99.4 1.5E-13 5.1E-18 117.2 5.7 71 363-434 1-76 (77)
305 2e5i_A Heterogeneous nuclear r 99.4 4.7E-13 1.6E-17 127.2 9.8 74 364-438 27-103 (124)
306 1wg5_A Heterogeneous nuclear r 99.4 5.1E-13 1.7E-17 121.6 9.5 78 360-438 13-95 (104)
307 3d2w_A TAR DNA-binding protein 99.4 6E-13 2E-17 118.3 9.7 77 359-439 8-86 (89)
308 1fj7_A Nucleolin RBD1, protein 99.4 1E-13 3.6E-18 124.7 4.6 80 360-440 15-98 (101)
309 2diu_A KIAA0430 protein; struc 99.4 6.5E-13 2.2E-17 120.5 9.7 76 275-355 6-87 (96)
310 2lcw_A RNA-binding protein FUS 99.1 2.2E-14 7.6E-19 132.6 0.0 83 273-355 3-98 (116)
311 2cpy_A RNA-binding protein 12; 99.4 2.2E-13 7.4E-18 126.1 6.5 82 359-441 12-98 (114)
312 2db1_A Heterogeneous nuclear r 99.4 3.5E-13 1.2E-17 125.8 8.0 77 274-351 14-97 (118)
313 2hgl_A HNRPF protein, heteroge 99.4 1.8E-13 6.2E-18 131.9 6.1 78 360-438 42-126 (136)
314 1wf0_A TDP-43, TAR DNA-binding 99.4 2.9E-13 1E-17 119.0 6.8 79 275-355 3-81 (88)
315 1iqt_A AUF1, heterogeneous nuc 99.4 1.7E-13 5.8E-18 116.4 5.0 70 279-349 1-75 (75)
316 3beg_B Splicing factor, argini 99.4 6.2E-13 2.1E-17 123.4 9.2 76 361-438 15-95 (115)
317 3egn_A RNA-binding protein 40; 99.4 7.1E-13 2.4E-17 126.9 9.8 81 360-440 43-133 (143)
318 2e5g_A U6 snRNA-specific termi 99.4 7.4E-13 2.5E-17 117.9 8.9 77 361-438 7-83 (94)
319 3beg_B Splicing factor, argini 99.4 5.9E-13 2E-17 123.6 8.4 77 274-352 13-94 (115)
320 2hgl_A HNRPF protein, heteroge 99.4 3.2E-13 1.1E-17 130.2 6.3 78 273-351 40-124 (136)
321 3q2s_C Cleavage and polyadenyl 99.4 5.1E-13 1.7E-17 139.0 8.4 76 276-351 67-149 (229)
322 2db1_A Heterogeneous nuclear r 99.4 3.2E-13 1.1E-17 126.1 6.1 78 360-438 15-99 (118)
323 2lmi_A GRSF-1, G-rich sequence 99.4 2.8E-13 9.5E-18 124.0 5.5 79 273-352 7-92 (107)
324 2f3j_A RNA and export factor b 99.4 9.1E-13 3.1E-17 131.9 9.5 80 273-352 84-167 (177)
325 1wel_A RNA-binding protein 12; 99.4 1.8E-13 6.1E-18 128.3 4.1 79 360-439 23-106 (124)
326 2cq2_A Hypothetical protein LO 99.4 8.6E-13 2.9E-17 123.8 8.7 78 360-438 23-107 (114)
327 2e5i_A Heterogeneous nuclear r 99.4 1.9E-12 6.5E-17 123.1 11.1 76 278-354 26-104 (124)
328 2bz2_A Negative elongation fac 99.4 9.3E-13 3.2E-17 123.9 8.6 79 273-354 35-113 (121)
329 2hgn_A Heterogeneous nuclear r 99.4 2.3E-13 8E-18 131.6 4.0 121 314-439 1-125 (139)
330 2lcw_A RNA-binding protein FUS 99.0 6.7E-14 2.3E-18 129.4 0.0 80 360-439 5-97 (116)
331 2dnn_A RNA-binding protein 12; 99.4 1.1E-12 3.7E-17 121.7 7.9 76 274-351 13-92 (109)
332 1wez_A HnRNP H', FTP-3, hetero 99.3 9.5E-13 3.2E-17 120.1 7.4 77 360-438 13-93 (102)
333 2lmi_A GRSF-1, G-rich sequence 99.3 3.8E-13 1.3E-17 123.0 4.7 79 359-438 8-93 (107)
334 3q2s_C Cleavage and polyadenyl 99.3 5.4E-13 1.8E-17 138.8 6.4 78 361-438 67-151 (229)
335 1wf0_A TDP-43, TAR DNA-binding 99.3 5.5E-13 1.9E-17 117.2 5.5 77 361-439 4-80 (88)
336 2voo_A Lupus LA protein; RNA-b 99.3 2.8E-12 9.7E-17 129.9 11.3 115 323-438 63-188 (193)
337 2diu_A KIAA0430 protein; struc 99.3 1.9E-12 6.6E-17 117.5 8.7 73 361-438 8-85 (96)
338 1iqt_A AUF1, heterogeneous nuc 99.3 4.2E-13 1.4E-17 113.9 4.1 70 364-434 1-75 (75)
339 3u1l_A PRE-mRNA-splicing facto 99.3 2.2E-12 7.4E-17 135.6 9.9 103 336-439 108-231 (240)
340 2hzc_A Splicing factor U2AF 65 99.3 2.4E-12 8.3E-17 112.1 8.6 71 361-433 5-86 (87)
341 2hgn_A Heterogeneous nuclear r 99.3 7.3E-13 2.5E-17 128.1 5.5 80 273-354 42-125 (139)
342 2bz2_A Negative elongation fac 99.3 1.9E-12 6.5E-17 121.8 8.2 78 360-440 37-114 (121)
343 2hgm_A HNRPF protein, heteroge 99.3 1.7E-12 5.8E-17 123.7 7.5 77 273-351 38-120 (126)
344 2xs2_A Deleted in azoospermia- 99.3 1E-12 3.5E-17 118.4 5.6 78 359-438 6-87 (102)
345 2dnn_A RNA-binding protein 12; 99.3 2.2E-12 7.5E-17 119.7 7.7 74 362-437 16-93 (109)
346 3u1l_A PRE-mRNA-splicing facto 99.3 2.1E-12 7.3E-17 135.6 8.6 81 274-355 131-232 (240)
347 2dnl_A Cytoplasmic polyadenyla 99.3 4E-12 1.4E-16 117.6 9.2 73 274-349 5-85 (114)
348 2dit_A HIV TAT specific factor 99.3 1.1E-11 3.6E-16 114.5 11.5 82 273-354 11-104 (112)
349 2dha_A FLJ20171 protein; RRM d 99.3 1.4E-12 4.7E-17 123.7 5.3 76 275-351 21-104 (123)
350 2f3j_A RNA and export factor b 99.3 4.1E-12 1.4E-16 127.2 8.9 79 360-438 86-168 (177)
351 3pgw_S U1-70K; protein-RNA com 99.3 5.9E-12 2E-16 142.7 10.5 81 274-354 99-184 (437)
352 2dha_A FLJ20171 protein; RRM d 99.3 1.5E-12 5E-17 123.5 3.7 80 361-441 22-109 (123)
353 2dnl_A Cytoplasmic polyadenyla 99.3 1.1E-11 3.7E-16 114.6 8.7 75 361-438 7-89 (114)
354 2hgm_A HNRPF protein, heteroge 99.2 4.6E-12 1.6E-16 120.7 6.0 77 360-438 40-122 (126)
355 2pe8_A Splicing factor 45; RRM 99.2 2.8E-11 9.7E-16 111.4 10.1 78 274-351 5-93 (105)
356 2dit_A HIV TAT specific factor 99.2 4.1E-11 1.4E-15 110.5 10.7 80 359-438 12-103 (112)
357 2pe8_A Splicing factor 45; RRM 99.2 4.1E-11 1.4E-15 110.3 10.2 77 360-436 6-93 (105)
358 2voo_A Lupus LA protein; RNA-b 99.2 3.5E-11 1.2E-15 121.9 9.6 76 276-352 108-187 (193)
359 2j8a_A Histone-lysine N-methyl 99.2 2.3E-11 7.9E-16 116.4 6.5 80 363-442 3-101 (136)
360 2j8a_A Histone-lysine N-methyl 99.1 3.5E-11 1.2E-15 115.2 6.0 73 278-350 3-94 (136)
361 2d9o_A DNAJ (HSP40) homolog, s 99.1 1.4E-10 4.7E-15 106.2 9.6 66 372-439 27-92 (100)
362 2d9o_A DNAJ (HSP40) homolog, s 99.1 4.5E-10 1.5E-14 102.8 11.8 76 277-354 10-92 (100)
363 3v4m_A Splicing factor U2AF 65 99.1 2.3E-10 8E-15 105.2 9.7 77 361-437 4-97 (105)
364 3v4m_A Splicing factor U2AF 65 99.1 2E-10 6.8E-15 105.6 8.6 78 274-351 2-96 (105)
365 3tht_A Alkylated DNA repair pr 99.1 2.6E-10 8.8E-15 125.6 9.4 77 273-350 14-97 (345)
366 1jmt_A Splicing factor U2AF 35 99.0 1.4E-10 4.9E-15 106.4 5.6 68 367-434 20-103 (104)
367 1jmt_A Splicing factor U2AF 35 99.0 1.2E-10 4.2E-15 106.8 4.3 68 282-349 20-103 (104)
368 3tht_A Alkylated DNA repair pr 99.0 6E-10 2E-14 122.7 9.8 76 359-435 15-97 (345)
369 3ue2_A Poly(U)-binding-splicin 98.9 1.7E-09 5.9E-14 101.7 8.4 76 361-436 19-108 (118)
370 3ue2_A Poly(U)-binding-splicin 98.9 1.8E-09 6.1E-14 101.6 8.1 76 275-350 18-107 (118)
371 3s6e_A RNA-binding protein 39; 98.9 3E-09 1E-13 99.5 8.8 77 361-437 6-93 (114)
372 3s6e_A RNA-binding protein 39; 98.9 3.8E-09 1.3E-13 98.9 8.7 77 274-350 4-91 (114)
373 2dnr_A Synaptojanin-1; RRM dom 98.7 6.3E-08 2.1E-12 87.2 9.3 75 360-438 5-87 (91)
374 1owx_A Lupus LA protein, SS-B, 98.6 6.5E-08 2.2E-12 91.6 8.8 80 361-441 17-100 (121)
375 1owx_A Lupus LA protein, SS-B, 98.5 2.8E-07 9.6E-12 87.3 10.0 76 273-349 14-93 (121)
376 2dnr_A Synaptojanin-1; RRM dom 98.4 3.8E-07 1.3E-11 82.1 7.8 74 275-352 5-86 (91)
377 1ufw_A Synaptojanin 2; RNP dom 98.4 2.7E-07 9.2E-12 83.6 5.2 74 359-436 12-94 (95)
378 3dxb_A Thioredoxin N-terminall 98.3 6.9E-07 2.4E-11 91.2 7.7 63 374-436 141-212 (222)
379 3dxb_A Thioredoxin N-terminall 98.2 1.5E-06 5.1E-11 88.7 8.0 62 289-350 141-211 (222)
380 1ufw_A Synaptojanin 2; RNP dom 98.1 2.6E-06 8.8E-11 77.2 5.7 72 275-350 13-93 (95)
381 2l9w_A U4/U6 snRNA-associated- 97.9 2.9E-05 9.8E-10 72.1 8.1 73 361-434 20-97 (117)
382 2dhx_A Poly (ADP-ribose) polym 97.4 0.00092 3.2E-08 61.4 10.8 89 275-375 6-99 (104)
383 2l9w_A U4/U6 snRNA-associated- 97.4 0.00034 1.2E-08 65.0 7.5 72 275-347 19-95 (117)
384 2dhx_A Poly (ADP-ribose) polym 97.1 0.0017 5.8E-08 59.7 9.0 76 362-441 8-88 (104)
385 1wey_A Calcipressin 1; structu 96.8 0.0016 5.6E-08 59.9 5.8 76 362-438 5-85 (104)
386 1wey_A Calcipressin 1; structu 96.7 0.0018 6.2E-08 59.6 5.7 75 277-352 5-84 (104)
387 1wwh_A Nucleoporin 35, nucleop 96.5 0.0078 2.7E-07 56.7 8.5 77 359-438 21-98 (119)
388 1whv_A Poly(A)-specific ribonu 95.4 0.05 1.7E-06 49.6 8.2 55 277-335 16-70 (100)
389 1uw4_A UPF3X; nonsense mediate 95.2 0.037 1.3E-06 49.8 6.9 64 278-341 2-72 (91)
390 1wwh_A Nucleoporin 35, nucleop 94.7 0.088 3E-06 49.6 8.1 72 275-349 22-94 (119)
391 1uw4_A UPF3X; nonsense mediate 94.6 0.16 5.4E-06 45.7 9.2 63 363-425 2-71 (91)
392 1whv_A Poly(A)-specific ribonu 94.2 0.13 4.6E-06 46.8 7.8 52 363-420 17-70 (100)
393 3ctr_A Poly(A)-specific ribonu 93.7 0.065 2.2E-06 48.9 4.9 54 278-335 7-60 (101)
394 3p3d_A Nucleoporin 53; structu 93.2 0.073 2.5E-06 50.9 4.6 73 362-436 7-98 (132)
395 3pq1_A Poly(A) RNA polymerase; 92.8 0.04 1.4E-06 62.9 2.5 58 274-332 50-107 (464)
396 3pq1_A Poly(A) RNA polymerase; 92.7 0.049 1.7E-06 62.2 2.9 56 361-417 52-107 (464)
397 3ctr_A Poly(A)-specific ribonu 91.9 0.091 3.1E-06 48.0 3.2 53 364-420 8-60 (101)
398 2l08_A Regulator of nonsense t 91.3 0.19 6.5E-06 45.7 4.6 66 276-341 8-80 (97)
399 2l08_A Regulator of nonsense t 89.7 0.58 2E-05 42.5 6.3 72 363-434 10-93 (97)
400 3p3d_A Nucleoporin 53; structu 88.5 0.43 1.5E-05 45.6 4.8 71 277-349 7-96 (132)
401 3d45_A Poly(A)-specific ribonu 77.5 4.5 0.00016 46.5 8.2 64 267-335 431-494 (507)
402 3d45_A Poly(A)-specific ribonu 55.4 16 0.00054 42.0 6.7 55 363-421 441-495 (507)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=1.6e-30 Score=265.37 Aligned_cols=167 Identities=19% Similarity=0.340 Sum_probs=147.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~ 347 (861)
...+.++|||+|||+++||++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.+++..+.|+.|++.
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 3457899999999999999999999999999999985 57899999999999999999999999999999999999
Q ss_pred ecCCCCCCCCcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe---CCCCccEEEEEECCHHHHHHHHHHhCCCee
Q 002974 348 YSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD---TQHKHNHKFIEFYDIRAAETALRTLNRSDV 424 (861)
Q Consensus 348 ~a~~k~~~~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri---tgksKGfAFVeF~d~eaA~kAL~~LNG~~I 424 (861)
++..... .......+|||+|||..+++++|+++|++||.|++|++ .+.++|||||+|.+.++|++|++.|||..|
T Consensus 91 ~~~~~~~--~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~ 168 (213)
T 4f02_A 91 WSQRDPS--LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 168 (213)
T ss_dssp ECCCCTH--HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred ccccccc--ccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 9875433 22334678999999999999999999999999999886 344689999999999999999999999999
Q ss_pred CCcEEEEEeccCCchhh
Q 002974 425 AGKQIKLEASRPGGARR 441 (861)
Q Consensus 425 ~Gr~IkVe~Akpk~~rr 441 (861)
.|++|+|.+++++..+.
T Consensus 169 ~g~~i~V~~a~~~~~~~ 185 (213)
T 4f02_A 169 NDRKVFVGRFKSRKERE 185 (213)
T ss_dssp TTEECEEEECCCHHHHH
T ss_pred CCEEEEEEEcCCCcccc
Confidence 99999999999876443
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.1e-29 Score=242.32 Aligned_cols=157 Identities=20% Similarity=0.342 Sum_probs=143.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCCC
Q 002974 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKD 353 (861)
Q Consensus 278 rtLfVgNLP~~vTEedL~elFsqfG~I~svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k~ 353 (861)
|+|||+|||.++++++|+++|++||.|..|++ .++++|||||+|.+.++|++|++.|+|..+.|+.|+|.++.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 68999999999999999999999999999986 46689999999999999999999999999999999999997765
Q ss_pred CCCCcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcE
Q 002974 354 NPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQ 428 (861)
Q Consensus 354 ~~~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~ 428 (861)
.. ......+|||+|||..+++++|+++|++||.|..+++ ++.++|||||+|.+.++|.+|++.|||..+.|++
T Consensus 81 ~~--~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 158 (166)
T 3md3_A 81 QS--SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 158 (166)
T ss_dssp CC--CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CC--CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Confidence 42 3445779999999999999999999999999999876 3566899999999999999999999999999999
Q ss_pred EEEEeccC
Q 002974 429 IKLEASRP 436 (861)
Q Consensus 429 IkVe~Akp 436 (861)
|+|.|+++
T Consensus 159 i~v~~a~~ 166 (166)
T 3md3_A 159 LRINWAAK 166 (166)
T ss_dssp CEEEESCC
T ss_pred EEEEecCC
Confidence 99999874
No 3
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=7e-29 Score=261.97 Aligned_cols=195 Identities=16% Similarity=0.270 Sum_probs=171.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCCCC
Q 002974 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 354 (861)
Q Consensus 275 ~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k~~ 354 (861)
.++++|||+|||.++++++|+++|++|| |..|++ ++++|||||+|.+.++|++|++.|+|..+.|+.|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~---- 93 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP---- 93 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC----
Confidence 4679999999999999999999999999 999998 8899999999999999999999999999999999999864
Q ss_pred CCCcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Q 002974 355 PSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQI 429 (861)
Q Consensus 355 ~~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~I 429 (861)
..++|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++.|+|..+.|++|
T Consensus 94 ------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 167 (284)
T 3smz_A 94 ------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTL 167 (284)
T ss_dssp ------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred ------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 2468999999999999999999999999999875 45568999999999999999999999999999999
Q ss_pred EEEeccCCchhhhchhhhhhhccccCC-CCCCCCC-Ccccc----CCcccEEEEe---CCCCCccee
Q 002974 430 KLEASRPGGARRFMVQSEQEQDDLNLC-QIPFDDL-SSGQM----VSSGVITSTC---MDNGSIQVL 487 (861)
Q Consensus 430 kVe~Akpk~~rrl~qq~eq~q~E~~vg-kNLp~s~-tee~L----s~fG~I~Sv~---~enG~srGF 487 (861)
+|.++.++.... .......++ +|||.++ ++++| ..||.|.+++ ..+|.++||
T Consensus 168 ~v~~a~~~~~~~------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~ 228 (284)
T 3smz_A 168 YVHWTDAGQLTP------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGF 228 (284)
T ss_dssp EEEECCGGGCCT------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEE
T ss_pred EEEECCCCCCCc------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccE
Confidence 999998764221 111222344 9999996 87888 8999998887 668888887
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=8.9e-29 Score=239.30 Aligned_cols=155 Identities=24% Similarity=0.428 Sum_probs=142.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecC
Q 002974 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (861)
Q Consensus 276 ~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~ 350 (861)
++++|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 5799999999999999999999999999999985 56688999999999999999999999999999999999998
Q ss_pred CCCCCCCcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeC
Q 002974 351 PKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVA 425 (861)
Q Consensus 351 ~k~~~~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~ 425 (861)
++.. .....+|||+|||..+++++|+++|++||.|..+++ .+.++|||||+|.+.++|.+|++.|||..+.
T Consensus 82 ~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 157 (168)
T 1b7f_A 82 PGGE----SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPE 157 (168)
T ss_dssp CCSS----TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCcc----cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEec
Confidence 7543 345689999999999999999999999999999876 3455799999999999999999999999998
Q ss_pred C--cEEEEEec
Q 002974 426 G--KQIKLEAS 434 (861)
Q Consensus 426 G--r~IkVe~A 434 (861)
| ++|+|.+|
T Consensus 158 g~~~~l~V~~A 168 (168)
T 1b7f_A 158 GGSQPLSVRLA 168 (168)
T ss_dssp TCSSCCEEEEC
T ss_pred CCCeEEEEEeC
Confidence 8 99999986
No 5
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=1.3e-28 Score=237.03 Aligned_cols=155 Identities=25% Similarity=0.435 Sum_probs=141.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecC
Q 002974 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (861)
Q Consensus 276 ~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~ 350 (861)
++++|||+|||+++++++|+++|++||.|..+++ +++++|||||+|.+.++|++|++.|+|..+.|+.|+|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 4689999999999999999999999999999985 67788999999999999999999999999999999999997
Q ss_pred CCCCCCCcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeC
Q 002974 351 PKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVA 425 (861)
Q Consensus 351 ~k~~~~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~ 425 (861)
++.. .....+|||+|||..+++++|+++|++||.|..+++ .+.++|||||+|.+.++|.+|++.|||..+.
T Consensus 81 ~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 156 (167)
T 1fxl_A 81 PSSA----SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS 156 (167)
T ss_dssp CCCG----GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCcc----cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccC
Confidence 6533 345678999999999999999999999999999886 3446899999999999999999999999999
Q ss_pred CcE--EEEEec
Q 002974 426 GKQ--IKLEAS 434 (861)
Q Consensus 426 Gr~--IkVe~A 434 (861)
|+. |+|.||
T Consensus 157 g~~~~i~v~~A 167 (167)
T 1fxl_A 157 GATEPITVKFA 167 (167)
T ss_dssp TCSSCCEEEEC
T ss_pred CCccceEEEeC
Confidence 964 888876
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=9e-29 Score=245.49 Aligned_cols=168 Identities=18% Similarity=0.334 Sum_probs=141.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeee
Q 002974 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V 346 (861)
....+.++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++. ++..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 45567999999999999999999999999999999985 467899999999999999999975 899999999999
Q ss_pred eecCCCCCCC--CcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHh
Q 002974 347 HYSIPKDNPS--EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTL 419 (861)
Q Consensus 347 ~~a~~k~~~~--~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~L 419 (861)
.++.++.... ......++|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~- 165 (196)
T 1l3k_A 87 KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ- 165 (196)
T ss_dssp EECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-
T ss_pred ecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-
Confidence 9997764432 22345689999999999999999999999999999876 355789999999999999999986
Q ss_pred CCCeeCCcEEEEEeccCCchhh
Q 002974 420 NRSDVAGKQIKLEASRPGGARR 441 (861)
Q Consensus 420 NG~~I~Gr~IkVe~Akpk~~rr 441 (861)
++..|.|+.|+|.++.++....
T Consensus 166 ~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 166 KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp SCCEETTEECEEEECC------
T ss_pred CCcEECCEEEEEEecCChhHhc
Confidence 8999999999999999987544
No 7
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=4.2e-29 Score=264.69 Aligned_cols=204 Identities=14% Similarity=0.150 Sum_probs=164.3
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeee
Q 002974 270 HPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (861)
Q Consensus 270 ~~~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki---tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V 346 (861)
......+.++|||+|||+++++++|+++|++||+|..|++ ...++|||||+|.+.++|++|++ +++..+.|+.|.|
T Consensus 34 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v 112 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIV 112 (292)
T ss_dssp --------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEE
Confidence 3446678999999999999999999999999999999986 23358999999999999999995 9999999999999
Q ss_pred eecCCCCCCCCcccCCcceEEecccCCCcHHHHHHHhcccC-cEEEEEeC----CCCccEEEEEECCHHHHHHHHHHhCC
Q 002974 347 HYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYG-EIREIRDT----QHKHNHKFIEFYDIRAAETALRTLNR 421 (861)
Q Consensus 347 ~~a~~k~~~~~k~~~~~tLfVgNLp~svTeedLrelFskfG-eI~sVrit----gksKGfAFVeF~d~eaA~kAL~~LNG 421 (861)
.++. .++|||+|||..+++++|+++|++|| .|..|++. +.++|||||+|.+.++|.+|++.|+|
T Consensus 113 ~~~~-----------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 181 (292)
T 2ghp_A 113 SHLT-----------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNG 181 (292)
T ss_dssp EECC-----------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTT
T ss_pred EECC-----------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 9863 57899999999999999999999999 99999863 35689999999999999999999999
Q ss_pred CeeCCcEEEEEeccCCchhhhchhhhhhhccccCC-CCCCCC-CCcccc----CCcccEEEEe---CCC--CCccee
Q 002974 422 SDVAGKQIKLEASRPGGARRFMVQSEQEQDDLNLC-QIPFDD-LSSGQM----VSSGVITSTC---MDN--GSIQVL 487 (861)
Q Consensus 422 ~~I~Gr~IkVe~Akpk~~rrl~qq~eq~q~E~~vg-kNLp~s-~tee~L----s~fG~I~Sv~---~en--G~srGF 487 (861)
..+.|+.|+|.++.++...... .........+. +||+.+ +++++| ..||.|..++ ... |.++||
T Consensus 182 ~~~~g~~l~v~~a~~~~~~~~~--~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~ 256 (292)
T 2ghp_A 182 LKIEGYTLVTKVSNPLEKSKRT--DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCC 256 (292)
T ss_dssp CEETTEECEEEECCCC-----------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEE
T ss_pred CEeCCcEEEEEECCCCcccccc--cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceE
Confidence 9999999999999887532211 01111222233 899999 999998 8999999998 333 888877
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=1.3e-28 Score=247.90 Aligned_cols=166 Identities=19% Similarity=0.356 Sum_probs=147.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
..+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 25 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 25 LAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred cCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEec
Confidence 345899999999999999999999999999999986 567899999999999999999999999999999999998
Q ss_pred cCCCCCCC-------CcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHH
Q 002974 349 SIPKDNPS-------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETAL 416 (861)
Q Consensus 349 a~~k~~~~-------~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL 416 (861)
+..+.... ......++|||+|||..+++++|+++|++||.|+.|++ +++++|||||+|.+.++|.+|+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 184 (216)
T 2qfj_A 105 PSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAV 184 (216)
T ss_dssp CSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHH
Confidence 87654221 12245689999999999999999999999999999886 3456899999999999999999
Q ss_pred HHhCCCeeCCcEEEEEeccCCch
Q 002974 417 RTLNRSDVAGKQIKLEASRPGGA 439 (861)
Q Consensus 417 ~~LNG~~I~Gr~IkVe~Akpk~~ 439 (861)
+.|||..|.|++|+|.++.++..
T Consensus 185 ~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 185 SSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp HHHTTCBCSSSBCEEEECSSCSS
T ss_pred HHccCCEeCCcEEEEEEecCCCC
Confidence 99999999999999999998753
No 9
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=4.2e-28 Score=250.19 Aligned_cols=165 Identities=22% Similarity=0.315 Sum_probs=148.5
Q ss_pred CCCCCcEEEEcCCCC-CCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCC
Q 002974 273 GEHPSRTLFVRNINS-NVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (861)
Q Consensus 273 ~~~~srtLfVgNLP~-~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~ 351 (861)
...++++|||+|||+ ++++++|+++|++||.|..|++....+|||||+|.+.++|++|++.|+|..+.|+.|+|.++.+
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 446789999999999 9999999999999999999998666689999999999999999999999999999999999975
Q ss_pred CCCCCCc-------------------------------ccCCcceEEecccCCCcHHHHHHHhcccC-cEEEEEeCCCCc
Q 002974 352 KDNPSEK-------------------------------DANQGTLVVFNLDSSVSTEELHQIFGIYG-EIREIRDTQHKH 399 (861)
Q Consensus 352 k~~~~~k-------------------------------~~~~~tLfVgNLp~svTeedLrelFskfG-eI~sVritgksK 399 (861)
+.....+ ....++|||+|||..+++++|+++|++|| +|..|++..+.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~ 189 (229)
T 2adc_A 110 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDR 189 (229)
T ss_dssp CCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSST
T ss_pred ccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCC
Confidence 5211100 11257899999999999999999999999 999999977789
Q ss_pred cEEEEEECCHHHHHHHHHHhCCCeeC-CcEEEEEeccCC
Q 002974 400 NHKFIEFYDIRAAETALRTLNRSDVA-GKQIKLEASRPG 437 (861)
Q Consensus 400 GfAFVeF~d~eaA~kAL~~LNG~~I~-Gr~IkVe~Akpk 437 (861)
|||||+|.+.++|.+|++.|||..+. |++|+|.|++++
T Consensus 190 g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 190 KMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred cEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 99999999999999999999999999 999999999874
No 10
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=2.8e-28 Score=237.12 Aligned_cols=154 Identities=16% Similarity=0.335 Sum_probs=141.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcC----C-------CEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcce
Q 002974 275 HPSRTLFVRNINSNVEDSELKALFEQF----G-------DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRK 343 (861)
Q Consensus 275 ~~srtLfVgNLP~~vTEedL~elFsqf----G-------~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~ 343 (861)
++.++|||+|||+++++++|+++|++| | .|..+++ ++++|||||+|.+.++|++|+ .|+|..+.|+.
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~-~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~ 79 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 79 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-ETTTTEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe-cCCCCEEEEEeCCHHHHHHHH-HhCCcEecCce
Confidence 467999999999999999999999999 7 8888887 677999999999999999999 89999999999
Q ss_pred eeeeecCCCCCCCCcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHH
Q 002974 344 LDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRT 418 (861)
Q Consensus 344 L~V~~a~~k~~~~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~ 418 (861)
|+|.++...... ....+|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++.
T Consensus 80 i~v~~~~~~~~~----~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (172)
T 2g4b_A 80 LKIRRPHDYQPL----PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 155 (172)
T ss_dssp CEEECCSSCCCC----TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHH
T ss_pred eeecCCcccCCC----CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 999998655332 34689999999999999999999999999999886 455689999999999999999999
Q ss_pred hCCCeeCCcEEEEEec
Q 002974 419 LNRSDVAGKQIKLEAS 434 (861)
Q Consensus 419 LNG~~I~Gr~IkVe~A 434 (861)
|||..+.|++|+|++|
T Consensus 156 l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 156 LNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HTTCEETTEECEEEEC
T ss_pred cCCCEECCeEEEEEeC
Confidence 9999999999999987
No 11
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=5.3e-28 Score=254.99 Aligned_cols=163 Identities=24% Similarity=0.458 Sum_probs=146.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHH----HHhhcCCCEEEEEe--CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELK----ALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~----elFsqfG~I~svki--tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V 346 (861)
+..++++|||+|||.++++++|+ ++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|+.|+|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 45679999999999999999976 89999999999986 6789999999999999999999999999999999999
Q ss_pred eecCCCCCCC----------------------------------------------------------------------
Q 002974 347 HYSIPKDNPS---------------------------------------------------------------------- 356 (861)
Q Consensus 347 ~~a~~k~~~~---------------------------------------------------------------------- 356 (861)
.|+..+....
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 9987644200
Q ss_pred -------------------------------------CcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCc
Q 002974 357 -------------------------------------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKH 399 (861)
Q Consensus 357 -------------------------------------~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksK 399 (861)
......++|||+|||..+++++|+++|++||.|++|++....+
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~ 244 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH 244 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCC
Confidence 0112346799999999999999999999999999999877677
Q ss_pred cEEEEEECCHHHHHHHHHHhCCCeeC-CcEEEEEecc
Q 002974 400 NHKFIEFYDIRAAETALRTLNRSDVA-GKQIKLEASR 435 (861)
Q Consensus 400 GfAFVeF~d~eaA~kAL~~LNG~~I~-Gr~IkVe~Ak 435 (861)
|||||+|.+.++|.+|++.|||..|. |+.|+|.|++
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 99999999999999999999999999 9999999986
No 12
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=1.1e-28 Score=238.84 Aligned_cols=157 Identities=18% Similarity=0.401 Sum_probs=141.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeec
Q 002974 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (861)
Q Consensus 275 ~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a 349 (861)
+++++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++. +..+.|+.|.|.++
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 35799999999999999999999999999999985 577899999999999999999984 57899999999998
Q ss_pred CCCCCCCCcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCee
Q 002974 350 IPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDV 424 (861)
Q Consensus 350 ~~k~~~~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I 424 (861)
.++.. ....++|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++ +++..+
T Consensus 79 ~~~~~----~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~ 153 (167)
T 2cjk_A 79 IPRDE----QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDF 153 (167)
T ss_dssp CCHHH----HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECS
T ss_pred cchhh----ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEe
Confidence 75422 234679999999999999999999999999999986 35668999999999999999998 899999
Q ss_pred CCcEEEEEeccCCc
Q 002974 425 AGKQIKLEASRPGG 438 (861)
Q Consensus 425 ~Gr~IkVe~Akpk~ 438 (861)
.|++|+|.++.++.
T Consensus 154 ~g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 154 KDRKIEIKRAEPRH 167 (167)
T ss_dssp SSSCEEEEECCCCC
T ss_pred CCeEEEEeecCCCC
Confidence 99999999999863
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=2.5e-28 Score=238.89 Aligned_cols=162 Identities=20% Similarity=0.280 Sum_probs=145.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEE----EeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTI----YTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~sv----kitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
...+.++|||+|||.++++++|+++|.+||.|..+ ..+++++|||||+|.+.++|++|++ |+|..+.|++|+|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 45679999999999999999999999999864431 1357899999999999999999995 999999999999999
Q ss_pred cCCCCCCCCcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcE
Q 002974 349 SIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQ 428 (861)
Q Consensus 349 a~~k~~~~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~ 428 (861)
+.++... .....++|||+|||..+++++|+++|++||+|..+..++.++|||||+|.+.++|.+|++.|||..|.|++
T Consensus 88 ~~~~~~~--~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (175)
T 1fje_B 88 PKGRDSK--KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 165 (175)
T ss_dssp CCCSSCS--TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEE
T ss_pred CCCcccc--ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 9876543 34457899999999999999999999999999998556788999999999999999999999999999999
Q ss_pred EEEEeccCC
Q 002974 429 IKLEASRPG 437 (861)
Q Consensus 429 IkVe~Akpk 437 (861)
|+|.+++++
T Consensus 166 i~v~~a~~k 174 (175)
T 1fje_B 166 VSLYYTGEK 174 (175)
T ss_dssp EEEEECSSC
T ss_pred EEEEecCCC
Confidence 999999886
No 14
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=6.6e-28 Score=234.28 Aligned_cols=157 Identities=18% Similarity=0.377 Sum_probs=138.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CC--CcccEEEEEeCCHHHHHHHHHHcCccccC---cceee
Q 002974 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----AC--KHRGFVMISYYDIRAARNAMKALQNKPLR---RRKLD 345 (861)
Q Consensus 276 ~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tg--ksrGyAFVeF~d~e~A~kALkaLnG~~L~---Gr~L~ 345 (861)
++++|||+|||+++++++|+++|++||+|..|++ ++ +++|||||+|.+.++|++|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4789999999999999999999999999999985 22 78999999999999999999999998876 67788
Q ss_pred eeecCCCCCCCCcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCC
Q 002974 346 IHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD----TQHKHNHKFIEFYDIRAAETALRTLNR 421 (861)
Q Consensus 346 V~~a~~k~~~~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri----tgksKGfAFVeF~d~eaA~kAL~~LNG 421 (861)
+.++.++... ....++|||+|||..+++++|+++|++||.|..|++ .++++|||||+|.+.++|.+|++.|||
T Consensus 82 ~~~~~~~~~~---~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 3nmr_A 82 MKPADSEKNN---AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQ 158 (175)
T ss_dssp EEECGGGCCS---CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred Eccccccccc---cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcC
Confidence 8777654432 345679999999999999999999999999999886 345689999999999999999999999
Q ss_pred CeeC---CcEEEEEecc
Q 002974 422 SDVA---GKQIKLEASR 435 (861)
Q Consensus 422 ~~I~---Gr~IkVe~Ak 435 (861)
..+. +++|+|.||.
T Consensus 159 ~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 159 AQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SCCCTTCSSCCEEEECC
T ss_pred CcccCCCCCCeEEEecC
Confidence 9776 4999999974
No 15
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=2.4e-28 Score=257.85 Aligned_cols=231 Identities=16% Similarity=0.172 Sum_probs=177.5
Q ss_pred HhcCCCCCc-chhhhccccccCCCCCCCCCCCcccccccccCCcc-ccccCcchhhhccCCCcCCCccCCCCCCCcccCC
Q 002974 192 TIGNLLPDE-DDLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGM-ELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGE 269 (861)
Q Consensus 192 ~IGnLlpdd-DdLlagv~d~~g~~~~~~~~dD~ee~Dvf~s~GGm-Ele~d~~~s~~~s~s~~~gg~~~~~~~ng~~~Ge 269 (861)
+||||.++. ++-|..++..+| +..... ....|+ -++.....++..++..+++..-..... ..
T Consensus 26 ~V~nLp~~~te~~l~~~F~~~G-i~~~~~----------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i--~v--- 89 (284)
T 3smz_A 26 LIRGLPGDVTNQEVHDLLSDYE-LKYCFV----------DKYKGTAFVTLLNGEQAEAAINAFHQSRLREREL--SV--- 89 (284)
T ss_dssp EEECCCTTCCHHHHHHHTTTSC-EEEEEE----------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEEC--EE---
T ss_pred EEeCCCCCCCHHHHHHHHHHcC-CEEEEE----------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEE--EE---
Confidence 389998877 777788888776 322211 111222 222222222233333333211100000 00
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCccee
Q 002974 270 HPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKL 344 (861)
Q Consensus 270 ~~~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L 344 (861)
....+.++|||+|||+++++++|+++|++||.|..+++ +++++|||||+|.+.++|++|++.|+|..+.|+.|
T Consensus 90 --~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 167 (284)
T 3smz_A 90 --QLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTL 167 (284)
T ss_dssp --EECCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred --EecCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 01235789999999999999999999999999999874 57789999999999999999999999999999999
Q ss_pred eeeecCCCCCCCCcccCCcceEEecccCCC-cHHHHHHHhcccCcEEEEEe----CCCCccEEEEEECCHHHHHHHHHHh
Q 002974 345 DIHYSIPKDNPSEKDANQGTLVVFNLDSSV-STEELHQIFGIYGEIREIRD----TQHKHNHKFIEFYDIRAAETALRTL 419 (861)
Q Consensus 345 ~V~~a~~k~~~~~k~~~~~tLfVgNLp~sv-TeedLrelFskfGeI~sVri----tgksKGfAFVeF~d~eaA~kAL~~L 419 (861)
.|.++.++... ......++|||+|||..+ ++++|+++|++||.|..|++ .+.++|+|||+|.+.++|.+|++.|
T Consensus 168 ~v~~a~~~~~~-~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l 246 (284)
T 3smz_A 168 YVHWTDAGQLT-PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQA 246 (284)
T ss_dssp EEEECCGGGCC-TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHH
T ss_pred EEEECCCCCCC-cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHh
Confidence 99999876543 233456899999999996 99999999999999999876 3456899999999999999999999
Q ss_pred CCCeeCCcEEEEEeccCCchhh
Q 002974 420 NRSDVAGKQIKLEASRPGGARR 441 (861)
Q Consensus 420 NG~~I~Gr~IkVe~Akpk~~rr 441 (861)
||..|.|++|+|.++.++..++
T Consensus 247 ~g~~~~g~~l~v~~a~~~~~~~ 268 (284)
T 3smz_A 247 DGLSLGGSHLRVSFCAPGPPGR 268 (284)
T ss_dssp TTCEETTEECEEEECCSSSCHH
T ss_pred CCCccCCeEEEEEEecCCCccc
Confidence 9999999999999999998766
No 16
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=6e-28 Score=239.96 Aligned_cols=162 Identities=16% Similarity=0.320 Sum_probs=144.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcC----C-------CEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCccee
Q 002974 276 PSRTLFVRNINSNVEDSELKALFEQF----G-------DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKL 344 (861)
Q Consensus 276 ~srtLfVgNLP~~vTEedL~elFsqf----G-------~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L 344 (861)
.+++|||+|||+++++++|+++|++| | .|..+++ ++++|||||+|.+.++|++|+ .|+|..+.|+.|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i 80 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-ETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceE
Confidence 57999999999999999999999999 6 7888877 778999999999999999999 899999999999
Q ss_pred eeeecCCCCCCCC----------------cccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEE
Q 002974 345 DIHYSIPKDNPSE----------------KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKF 403 (861)
Q Consensus 345 ~V~~a~~k~~~~~----------------k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAF 403 (861)
+|.++..+..... .....++|||+|||..+++++|+++|++||.|..|++ ++.++||||
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~af 160 (198)
T 2yh0_A 81 KIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 160 (198)
T ss_dssp EEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEE
T ss_pred EEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEE
Confidence 9999876532211 1134689999999999999999999999999999886 344589999
Q ss_pred EEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCch
Q 002974 404 IEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (861)
Q Consensus 404 VeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~~ 439 (861)
|+|.+.++|.+|++.|||..|.|++|+|.+++++..
T Consensus 161 V~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 161 CEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred EEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999999999999999999999999998763
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=5e-28 Score=242.05 Aligned_cols=162 Identities=22% Similarity=0.323 Sum_probs=146.2
Q ss_pred CCcEEEEcCCCC-CCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCCCC
Q 002974 276 PSRTLFVRNINS-NVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 354 (861)
Q Consensus 276 ~srtLfVgNLP~-~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k~~ 354 (861)
.+++|||+|||+ ++++++|+++|++||.|..|++....+|||||+|.+.++|++|++.|+|..+.|+.|+|.++..+..
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~ 81 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 81 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCc
Confidence 368999999999 9999999999999999999998666689999999999999999999999999999999999875421
Q ss_pred CCCc-------------------------------ccCCcceEEecccCCCcHHHHHHHhcccC-cEEEEEeCCCCccEE
Q 002974 355 PSEK-------------------------------DANQGTLVVFNLDSSVSTEELHQIFGIYG-EIREIRDTQHKHNHK 402 (861)
Q Consensus 355 ~~~k-------------------------------~~~~~tLfVgNLp~svTeedLrelFskfG-eI~sVritgksKGfA 402 (861)
...+ ....++|||+|||..+++++|+++|++|| .|.+|++....+|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~a 161 (198)
T 1qm9_A 82 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMA 161 (198)
T ss_dssp CCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCE
T ss_pred CCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEE
Confidence 1100 12267899999999999999999999999 999999977789999
Q ss_pred EEEECCHHHHHHHHHHhCCCeeC-CcEEEEEeccCC
Q 002974 403 FIEFYDIRAAETALRTLNRSDVA-GKQIKLEASRPG 437 (861)
Q Consensus 403 FVeF~d~eaA~kAL~~LNG~~I~-Gr~IkVe~Akpk 437 (861)
||+|.+.++|.+|++.|||..+. |++|+|.|++++
T Consensus 162 fV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 162 LIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp EEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 99999999999999999999999 999999999874
No 18
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=1.4e-27 Score=244.17 Aligned_cols=159 Identities=18% Similarity=0.222 Sum_probs=138.0
Q ss_pred CCcEEEEcCCC-CCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCCCC
Q 002974 276 PSRTLFVRNIN-SNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 354 (861)
Q Consensus 276 ~srtLfVgNLP-~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k~~ 354 (861)
++++|||+||| ..+++++|+++|++||.|.+|++....+|||||+|.+.++|++|++.|||..+.|++|+|.++..+..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 57899999999 89999999999999999999998667799999999999999999999999999999999999864321
Q ss_pred CCC------------c---------------------ccCCcceEEecccCCCcHHHHHHHhcccCcE--EEEEeCC---
Q 002974 355 PSE------------K---------------------DANQGTLVVFNLDSSVSTEELHQIFGIYGEI--REIRDTQ--- 396 (861)
Q Consensus 355 ~~~------------k---------------------~~~~~tLfVgNLp~svTeedLrelFskfGeI--~sVritg--- 396 (861)
... + ....++|||+|||+.+++++|+++|++||.| .+|++..
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~ 162 (205)
T 3tyt_A 83 MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKS 162 (205)
T ss_dssp CCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCS
T ss_pred CCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCC
Confidence 100 0 0123579999999999999999999999999 8888743
Q ss_pred CCccEEEEEECCHHHHHHHHHHhCCCeeCCc----EEEEEec
Q 002974 397 HKHNHKFIEFYDIRAAETALRTLNRSDVAGK----QIKLEAS 434 (861)
Q Consensus 397 ksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr----~IkVe~A 434 (861)
..+|||||+|.+.++|.+||..|||..|.|+ ++.|+++
T Consensus 163 ~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 163 ERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 3469999999999999999999999999875 5666664
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=2.1e-27 Score=251.66 Aligned_cols=231 Identities=17% Similarity=0.189 Sum_probs=173.4
Q ss_pred HHhcCCCCCc-chhhhccccccCCCCCCCCCCCcccccccccCCcc-ccccCcchhhhccCCCcCCCccCCCCCCCcccC
Q 002974 191 QTIGNLLPDE-DDLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGM-ELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVG 268 (861)
Q Consensus 191 q~IGnLlpdd-DdLlagv~d~~g~~~~~~~~dD~ee~Dvf~s~GGm-Ele~d~~~s~~~s~s~~~gg~~~~~~~ng~~~G 268 (861)
-+||||.++. ++-|..++..+|.+.......|... + .|+ -++.....++..++ .+++..- ++...
T Consensus 44 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-----~-~g~afV~f~~~~~A~~A~-~~~~~~~-----~g~~i- 110 (292)
T 2ghp_A 44 VLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK-----N-FRFARIEFARYDGALAAI-TKTHKVV-----GQNEI- 110 (292)
T ss_dssp EEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS-----S-SEEEEEEESSHHHHHHHH-TTTTCEE-----TTEEC-
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC-----C-cEEEEEEECCHHHHHHHH-HhCCcEe-----CCcEE-
Confidence 3499999887 7778888888887655544433211 1 233 22222222222223 2332111 11000
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCC-CEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcce
Q 002974 269 EHPYGEHPSRTLFVRNINSNVEDSELKALFEQFG-DIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRK 343 (861)
Q Consensus 269 e~~~~~~~srtLfVgNLP~~vTEedL~elFsqfG-~I~svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~ 343 (861)
.......++|||+|||+++++++|+++|++|| .|..|++ .+.++|||||+|.+.++|++|++.|+|..+.|+.
T Consensus 111 --~v~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 188 (292)
T 2ghp_A 111 --IVSHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYT 188 (292)
T ss_dssp --EEEECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred --EEEECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 00123589999999999999999999999999 9999985 3568999999999999999999999999999999
Q ss_pred eeeeecCCCCCCCC---cccCCcceEEecccCC-CcHHHHHHHhcccCcEEEEEeC------CCCccEEEEEECCHHHHH
Q 002974 344 LDIHYSIPKDNPSE---KDANQGTLVVFNLDSS-VSTEELHQIFGIYGEIREIRDT------QHKHNHKFIEFYDIRAAE 413 (861)
Q Consensus 344 L~V~~a~~k~~~~~---k~~~~~tLfVgNLp~s-vTeedLrelFskfGeI~sVrit------gksKGfAFVeF~d~eaA~ 413 (861)
|.|.++.++..... .....++|||+|||.. +++++|+++|++||.|..|++. +.++|||||+|.+.++|.
T Consensus 189 l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~ 268 (292)
T 2ghp_A 189 LVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAE 268 (292)
T ss_dssp CEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHH
T ss_pred EEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHH
Confidence 99999987655432 2345689999999999 9999999999999999999873 567899999999999999
Q ss_pred HHHHHhCCCeeCCcEEEEEeccCC
Q 002974 414 TALRTLNRSDVAGKQIKLEASRPG 437 (861)
Q Consensus 414 kAL~~LNG~~I~Gr~IkVe~Akpk 437 (861)
+|+ .|||..|.|++|+|.|++++
T Consensus 269 ~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 269 RAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp HHG-GGTTEEETTEEEEEEECCCC
T ss_pred HHH-HhcCCEECCcEEEEEEecCC
Confidence 999 99999999999999999986
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.93 E-value=7.3e-26 Score=238.07 Aligned_cols=156 Identities=24% Similarity=0.360 Sum_probs=142.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCC
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k 352 (861)
...+.++|||+|||+++|+++|+++|++||.|..|++ .+++|||||+|.+.++|++|++.|+|..+.|+.|+|.++.+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~- 95 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI-NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH- 95 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC-
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc-
Confidence 3456899999999999999999999999999999998 67799999999999999999999999999999999999864
Q ss_pred CCCCCcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCC-CeeC--
Q 002974 353 DNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD----TQHKHNHKFIEFYDIRAAETALRTLNR-SDVA-- 425 (861)
Q Consensus 353 ~~~~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri----tgksKGfAFVeF~d~eaA~kAL~~LNG-~~I~-- 425 (861)
..+|||+|||..+++++|+++|++||.|..|++ +++++|||||+|.+.++|.+|++.||+ ..+.
T Consensus 96 ---------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~ 166 (261)
T 3sde_A 96 ---------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTT 166 (261)
T ss_dssp ---------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSS
T ss_pred ---------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecC
Confidence 468999999999999999999999999999876 456789999999999999999999954 4544
Q ss_pred -CcEEEEEeccCCch
Q 002974 426 -GKQIKLEASRPGGA 439 (861)
Q Consensus 426 -Gr~IkVe~Akpk~~ 439 (861)
+++|.|.++.+...
T Consensus 167 ~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 167 TPRPVIVEPMEQFDD 181 (261)
T ss_dssp SCCBCEEEECCCEES
T ss_pred CCceEEEeeccccCc
Confidence 89999999987653
No 21
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.81 E-value=1.2e-19 Score=175.36 Aligned_cols=127 Identities=20% Similarity=0.273 Sum_probs=113.8
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHc-CccccCcceeeeeecCCCC------------CCCCcccCCcceEEecccCCCcHH
Q 002974 311 CKHRGFVMISYYDIRAARNAMKAL-QNKPLRRRKLDIHYSIPKD------------NPSEKDANQGTLVVFNLDSSVSTE 377 (861)
Q Consensus 311 gksrGyAFVeF~d~e~A~kALkaL-nG~~L~Gr~L~V~~a~~k~------------~~~~k~~~~~tLfVgNLp~svTee 377 (861)
.+-+|+++|+|.+.++|++|++.+ ||..+.| .+.+.++..+. .........++|||+|||+.++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 467899999999999999999999 9999999 99999886531 112233457899999999999999
Q ss_pred HHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 002974 378 ELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (861)
Q Consensus 378 dLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~ 438 (861)
+|+++|++||.|.+|++...++|||||+|.+.++|.+|++.|||..|.|++|+|++++++.
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999999999999977789999999999999999999999999999999999998864
No 22
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.79 E-value=7.3e-19 Score=170.69 Aligned_cols=130 Identities=19% Similarity=0.285 Sum_probs=104.7
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceee-------eeecCCCC--CCCCcccCCcceEEecccCCCcHHHHH
Q 002974 310 ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD-------IHYSIPKD--NPSEKDANQGTLVVFNLDSSVSTEELH 380 (861)
Q Consensus 310 tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~-------V~~a~~k~--~~~~k~~~~~tLfVgNLp~svTeedLr 380 (861)
..+++|||||+|.+.++|++|++.+++....+..+. ........ ..........+|||+|||+.+++++|+
T Consensus 9 ~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 88 (158)
T 2kn4_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLR 88 (158)
T ss_dssp CSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHH
T ss_pred CccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHH
Confidence 457899999999999999999998876543322222 22222111 111223456899999999999999999
Q ss_pred HHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCch
Q 002974 381 QIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (861)
Q Consensus 381 elFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~~ 439 (861)
++|++||.|..|++ +++++|||||+|.+.++|++|++.|||..|.|++|+|.+++++..
T Consensus 89 ~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 89 RVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp HHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred HHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 99999999999986 456789999999999999999999999999999999999998753
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.78 E-value=4.7e-19 Score=164.63 Aligned_cols=103 Identities=16% Similarity=0.315 Sum_probs=72.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCC
Q 002974 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (861)
Q Consensus 276 ~srtLfVgNLP~~vTEedL~elFsqfG~I~svki---tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k 352 (861)
.+.+|||+|||+++++++|+++|++||.|..|++ .+.+||||||+|.+.++|++|++.|+|..|.|++|+|.++.++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 3678999999999999999999999999999985 4567999999999999999999999999999999999999876
Q ss_pred CCCCC----cccCCcceEEecccCCCcHHH
Q 002974 353 DNPSE----KDANQGTLVVFNLDSSVSTEE 378 (861)
Q Consensus 353 ~~~~~----k~~~~~tLfVgNLp~svTeed 378 (861)
..... .....++|||+|||+++|++.
T Consensus 84 ~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------
T ss_pred cccccccccccCCCCceEeCCCCCCccccc
Confidence 54322 233456899999999999864
No 24
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.68 E-value=7.8e-17 Score=149.64 Aligned_cols=105 Identities=17% Similarity=0.238 Sum_probs=72.3
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEEEe---CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD---TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sVri---tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk 437 (861)
..++|||+|||+++++++|+++|++||.|++|++ .+.+||||||+|.+.++|++||+.|+|..|.|++|+|.+++++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 3568999999999999999999999999999886 3446899999999999999999999999999999999999987
Q ss_pred chhhhchhhhhhhccccCC-CCCCCCCCcc
Q 002974 438 GARRFMVQSEQEQDDLNLC-QIPFDDLSSG 466 (861)
Q Consensus 438 ~~rrl~qq~eq~q~E~~vg-kNLp~s~tee 466 (861)
..+... .....+....++ +||+.++|++
T Consensus 84 ~~~~~~-~~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 84 KEREAE-LGARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp CC----------------------------
T ss_pred cccccc-cccccCCCCceEeCCCCCCcccc
Confidence 654411 122222223345 8999988876
No 25
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.66 E-value=1e-16 Score=147.73 Aligned_cols=104 Identities=26% Similarity=0.398 Sum_probs=93.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe--CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecC
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki--tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~ 350 (861)
...+.++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|+|..+.|+.|.|.|+.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 3456899999999999999999999999999999986 57789999999999999999999999999999999999997
Q ss_pred CCCCCCCcccCCcceEEecccCCCcHHHHHHHhcccCc
Q 002974 351 PKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGE 388 (861)
Q Consensus 351 ~k~~~~~k~~~~~tLfVgNLp~svTeedLrelFskfGe 388 (861)
++... .+++...++++|.++|++||.
T Consensus 84 ~~~~~------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 84 ANRAF------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHHT------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred CChhh------------hhhhHhHhHHHHHHHHHHhCC
Confidence 54332 456778899999999999984
No 26
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=143.21 Aligned_cols=76 Identities=22% Similarity=0.489 Sum_probs=71.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecC
Q 002974 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (861)
Q Consensus 276 ~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~ 350 (861)
..++|||+|||+++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..|.|++|+|.|++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 3678999999999999999999999999999985 57899999999999999999999999999999999999997
Q ss_pred C
Q 002974 351 P 351 (861)
Q Consensus 351 ~ 351 (861)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 27
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.64 E-value=4.6e-16 Score=158.46 Aligned_cols=121 Identities=22% Similarity=0.219 Sum_probs=101.7
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~A 434 (861)
...++|||+|||+++|+++|+++|++||+|++|++ +++++|||||+|.+.++|++|++.+++..+.|+.|+|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 34679999999999999999999999999999986 4567899999999999999999999999999999999998
Q ss_pred cCCchhhhchhhhhhhccccCC-CCCCCCCCcccc----CCcccEEEEe--CCCCCccee
Q 002974 435 RPGGARRFMVQSEQEQDDLNLC-QIPFDDLSSGQM----VSSGVITSTC--MDNGSIQVL 487 (861)
Q Consensus 435 kpk~~rrl~qq~eq~q~E~~vg-kNLp~s~tee~L----s~fG~I~Sv~--~enG~srGF 487 (861)
....... ......++ +||+.++++++| ..||.|..++ ...+.++||
T Consensus 93 ~~~~~~~-------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~ 145 (213)
T 4f02_A 93 QRDPSLR-------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 145 (213)
T ss_dssp CCCTHHH-------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEE
T ss_pred ccccccc-------ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceE
Confidence 8764222 11223344 999999999999 8999999988 445567876
No 28
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.64 E-value=7.5e-16 Score=154.77 Aligned_cols=127 Identities=21% Similarity=0.278 Sum_probs=104.0
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Ak 435 (861)
..++|||+|||.++++++|+++|++||+|.+|++ +++.+|||||+|.+.++|++|++.|++..|.|+.|+|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 3578999999999999999999999999999987 45579999999999999999999999999999999999988
Q ss_pred CCchhh-hchh-hhhhhccccCC-CCCCCCCCcccc----CCcccEEEEe----CCCCCccee
Q 002974 436 PGGARR-FMVQ-SEQEQDDLNLC-QIPFDDLSSGQM----VSSGVITSTC----MDNGSIQVL 487 (861)
Q Consensus 436 pk~~rr-l~qq-~eq~q~E~~vg-kNLp~s~tee~L----s~fG~I~Sv~----~enG~srGF 487 (861)
...... ...+ .........+. +||+.++++++| ..||.|..++ .++|+++||
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~ 169 (216)
T 2qfj_A 107 NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGY 169 (216)
T ss_dssp CCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEE
T ss_pred CccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCce
Confidence 776443 2111 11222223344 999999999999 8999999988 357888887
No 29
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.64 E-value=2.1e-16 Score=151.33 Aligned_cols=121 Identities=20% Similarity=0.325 Sum_probs=77.7
Q ss_pred cEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCCCCCCCcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe
Q 002974 315 GFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD 394 (861)
Q Consensus 315 GyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k~~~~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri 394 (861)
-++|++|.+...|..|++.++|....|+.- +.+.. +.......++|||+|||..+++++|+++|++||+|+.|++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~----~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i 79 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGR----PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYI 79 (135)
T ss_dssp -------------------------------CCSCC----SCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEEC
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCcCC----CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 478999999999999999999877666542 22322 2234456789999999999999999999999999999987
Q ss_pred -----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCchh
Q 002974 395 -----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGAR 440 (861)
Q Consensus 395 -----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~~r 440 (861)
+++.+|||||+|.+.++|++|++.||+..|.|++|+|++++++..+
T Consensus 80 ~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 80 PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp CCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 3466899999999999999999999999999999999999987543
No 30
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.63 E-value=8.2e-16 Score=147.42 Aligned_cols=118 Identities=24% Similarity=0.276 Sum_probs=100.5
Q ss_pred cceEEecccCCCcHHHHHHHhcccCcEEEEEeC----CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 002974 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (861)
Q Consensus 363 ~tLfVgNLp~svTeedLrelFskfGeI~sVrit----gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~ 438 (861)
++|||+|||.++++++|+++|++||+|.+|++. ++++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 479999999999999999999999999999873 4568999999999999999999999999999999999998765
Q ss_pred hhhhchhhhhhhccccCC-CCCCCCCCcccc----CCcccEEEEe----CCCCCccee
Q 002974 439 ARRFMVQSEQEQDDLNLC-QIPFDDLSSGQM----VSSGVITSTC----MDNGSIQVL 487 (861)
Q Consensus 439 ~rrl~qq~eq~q~E~~vg-kNLp~s~tee~L----s~fG~I~Sv~----~enG~srGF 487 (861)
... ......+. +||+.++++++| ..||.|.++. ..+|.++||
T Consensus 81 ~~~-------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~ 131 (166)
T 3md3_A 81 QSS-------SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGY 131 (166)
T ss_dssp CCC-------CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEE
T ss_pred CCC-------CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceE
Confidence 221 11122333 899999999999 8999999987 367888886
No 31
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.63 E-value=5.3e-16 Score=140.89 Aligned_cols=75 Identities=28% Similarity=0.462 Sum_probs=70.8
Q ss_pred CcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 002974 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (861)
Q Consensus 362 ~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akp 436 (861)
.++|||+|||.++|+++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|||..|.|++|+|++|+|
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 468999999999999999999999999999876 466789999999999999999999999999999999999986
No 32
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.62 E-value=1.2e-15 Score=150.94 Aligned_cols=125 Identities=12% Similarity=0.178 Sum_probs=100.0
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
....++|||+|||.++++++|+++|++||+|.+|++ ++.++|||||+|.+.++|++|++. ++..+.|+.|+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 345789999999999999999999999999999876 355689999999999999999985 99999999999999
Q ss_pred ccCCchhhhchhhhhhhccccCC-CCCCCCCCcccc----CCcccEEEEe----CCCCCccee
Q 002974 434 SRPGGARRFMVQSEQEQDDLNLC-QIPFDDLSSGQM----VSSGVITSTC----MDNGSIQVL 487 (861)
Q Consensus 434 Akpk~~rrl~qq~eq~q~E~~vg-kNLp~s~tee~L----s~fG~I~Sv~----~enG~srGF 487 (861)
+.++.... ..........++ +||+.++++++| ..||.|..++ .++|.++||
T Consensus 89 ~~~~~~~~---~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~ 148 (196)
T 1l3k_A 89 AVSREDSQ---RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGF 148 (196)
T ss_dssp CCC--------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEE
T ss_pred ccCccccc---ccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccce
Confidence 98765322 111111223344 999999999999 8999999887 357888987
No 33
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=4.8e-16 Score=140.02 Aligned_cols=94 Identities=22% Similarity=0.386 Sum_probs=82.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCCCCCCC
Q 002974 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSE 357 (861)
Q Consensus 278 rtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k~~~~~ 357 (861)
++|||+|||.++++++|+++|++||+|..|++...++|||||+|.+.++|++|++.|+|..+.|+.|+|.++.++.....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 80 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSR 80 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCccc
Confidence 58999999999999999999999999999997444899999999999999999999999999999999999987654321
Q ss_pred ------cccCCcceEEeccc
Q 002974 358 ------KDANQGTLVVFNLD 371 (861)
Q Consensus 358 ------k~~~~~tLfVgNLp 371 (861)
......+|||+||+
T Consensus 81 ~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 81 FDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSCCCSCCCCSCCCSCCCC
T ss_pred CCCCCccccCCCceecCCCC
Confidence 11235789999996
No 34
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.62 E-value=1.8e-15 Score=145.23 Aligned_cols=117 Identities=26% Similarity=0.363 Sum_probs=101.0
Q ss_pred CcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 002974 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (861)
Q Consensus 362 ~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akp 436 (861)
.++|||+|||..+++++|+++|++||.|.+|++ +++++|||||+|.+.++|++|++.|+|..+.|++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 478999999999999999999999999999886 455679999999999999999999999999999999999987
Q ss_pred CchhhhchhhhhhhccccCC-CCCCCCCCcccc----CCcccEEEEe----CCCCCccee
Q 002974 437 GGARRFMVQSEQEQDDLNLC-QIPFDDLSSGQM----VSSGVITSTC----MDNGSIQVL 487 (861)
Q Consensus 437 k~~rrl~qq~eq~q~E~~vg-kNLp~s~tee~L----s~fG~I~Sv~----~enG~srGF 487 (861)
..... ....+. +||+.++++++| ..||.|..++ ..+|.++||
T Consensus 82 ~~~~~---------~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~ 132 (167)
T 1fxl_A 82 SSASI---------RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV 132 (167)
T ss_dssp CCGGG---------TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEE
T ss_pred CcccC---------CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccce
Confidence 65221 112233 899999999999 8999999887 447888887
No 35
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.61 E-value=1.9e-15 Score=145.69 Aligned_cols=118 Identities=25% Similarity=0.322 Sum_probs=101.3
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Ak 435 (861)
+.++|||+|||.++++++|+++|++||+|.+|++ ++.++|||||+|.+.++|++|++.|++..+.|++|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 3578999999999999999999999999999986 34467999999999999999999999999999999999998
Q ss_pred CCchhhhchhhhhhhccccCC-CCCCCCCCcccc----CCcccEEEEe----CCCCCccee
Q 002974 436 PGGARRFMVQSEQEQDDLNLC-QIPFDDLSSGQM----VSSGVITSTC----MDNGSIQVL 487 (861)
Q Consensus 436 pk~~rrl~qq~eq~q~E~~vg-kNLp~s~tee~L----s~fG~I~Sv~----~enG~srGF 487 (861)
++.... ....+. +||+.++++++| .+||.|..++ ..+|.++||
T Consensus 82 ~~~~~~---------~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~ 133 (168)
T 1b7f_A 82 PGGESI---------KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGV 133 (168)
T ss_dssp CCSSTT---------TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEE
T ss_pred CCcccC---------CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceE
Confidence 765221 122233 899999999999 9999999887 347888886
No 36
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=4.3e-15 Score=133.58 Aligned_cols=83 Identities=14% Similarity=0.288 Sum_probs=76.4
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeee
Q 002974 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~ 347 (861)
....+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 35567899999999999999999999999999999985 46788999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 002974 348 YSIPKDN 354 (861)
Q Consensus 348 ~a~~k~~ 354 (861)
++.++..
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9987654
No 37
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.60 E-value=6e-16 Score=138.18 Aligned_cols=79 Identities=22% Similarity=0.432 Sum_probs=71.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCC-CEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcC-ccccCcceeeeeec
Q 002974 277 SRTLFVRNINSNVEDSELKALFEQFG-DIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQ-NKPLRRRKLDIHYS 349 (861)
Q Consensus 277 srtLfVgNLP~~vTEedL~elFsqfG-~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLn-G~~L~Gr~L~V~~a 349 (861)
+++|||+|||+++||++|+++|++|| .|..|++ ++++||||||+|.+.++|++|++.++ +..+.|++|+|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 7998874 57899999999999999999999874 56799999999999
Q ss_pred CCCCCC
Q 002974 350 IPKDNP 355 (861)
Q Consensus 350 ~~k~~~ 355 (861)
.++...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 887654
No 38
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=4.7e-15 Score=132.89 Aligned_cols=83 Identities=24% Similarity=0.410 Sum_probs=77.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~ 347 (861)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..+.|++|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3457899999999999999999999999999999996 57789999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 002974 348 YSIPKDNP 355 (861)
Q Consensus 348 ~a~~k~~~ 355 (861)
++.++...
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99887654
No 39
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.60 E-value=2.7e-15 Score=139.05 Aligned_cols=79 Identities=19% Similarity=0.379 Sum_probs=74.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
+.+.++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|||+.|.|+.|+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 457899999999999999999999999999999985 588999999999999999999999999999999999999
Q ss_pred cCCC
Q 002974 349 SIPK 352 (861)
Q Consensus 349 a~~k 352 (861)
+..+
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8644
No 40
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.60 E-value=2.4e-15 Score=138.09 Aligned_cols=80 Identities=16% Similarity=0.309 Sum_probs=73.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccc--cCcceeeeeecC
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKP--LRRRKLDIHYSI 350 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~--L~Gr~L~V~~a~ 350 (861)
...++++|||+|||.++++++|+++|++||.|..|++ .+.||||||+|.+.++|++|++.|++.. +.||+|+|+|++
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i-~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVV-MPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEE-EcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 4567999999999999999999999999999999997 4578999999999999999999999876 789999999998
Q ss_pred CCC
Q 002974 351 PKD 353 (861)
Q Consensus 351 ~k~ 353 (861)
.++
T Consensus 96 ~k~ 98 (100)
T 3r27_A 96 SQK 98 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 754
No 41
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=6.3e-15 Score=133.41 Aligned_cols=84 Identities=17% Similarity=0.299 Sum_probs=77.4
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeee
Q 002974 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V 346 (861)
....+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 45567899999999999999999999999999999985 5778999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 002974 347 HYSIPKDNP 355 (861)
Q Consensus 347 ~~a~~k~~~ 355 (861)
.++.++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999876543
No 42
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3e-15 Score=138.51 Aligned_cols=83 Identities=22% Similarity=0.322 Sum_probs=74.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCc--cccCcceeeeeecC
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQN--KPLRRRKLDIHYSI 350 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG--~~L~Gr~L~V~~a~ 350 (861)
...+.++|||+|||++++|++|+++|++||+|..|++. +.||||||+|.+.++|++|++.|++ ..|.|++|+|.|+.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~-~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 35578999999999999999999999999999999973 3589999999999999999998864 78999999999998
Q ss_pred CCCCCC
Q 002974 351 PKDNPS 356 (861)
Q Consensus 351 ~k~~~~ 356 (861)
++....
T Consensus 91 ~~~~~~ 96 (105)
T 1sjq_A 91 HKELKT 96 (105)
T ss_dssp SSSCCC
T ss_pred CCCCCc
Confidence 876543
No 43
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=7.1e-15 Score=131.91 Aligned_cols=82 Identities=23% Similarity=0.485 Sum_probs=75.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~ 347 (861)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++ |++..|.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 4567899999999999999999999999999999986 46789999999999999999998 99999999999999
Q ss_pred ecCCCCCC
Q 002974 348 YSIPKDNP 355 (861)
Q Consensus 348 ~a~~k~~~ 355 (861)
++.++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2dgs_A 85 RAEPRDSK 92 (99)
T ss_dssp ECCCCCCC
T ss_pred ECCCCccc
Confidence 99887654
No 44
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.59 E-value=8.1e-15 Score=135.01 Aligned_cols=84 Identities=20% Similarity=0.407 Sum_probs=77.4
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeee
Q 002974 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V 346 (861)
....+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 45567999999999999999999999999999999985 5678999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 002974 347 HYSIPKDNP 355 (861)
Q Consensus 347 ~~a~~k~~~ 355 (861)
.|+.++...
T Consensus 90 ~~a~~~~~~ 98 (115)
T 2dgo_A 90 NWATRKPPA 98 (115)
T ss_dssp EESSCCCCC
T ss_pred EEccCCCCC
Confidence 999877654
No 45
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.59 E-value=1.5e-15 Score=155.12 Aligned_cols=127 Identities=19% Similarity=0.241 Sum_probs=99.6
Q ss_pred CCcceEEeccc-CCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCch
Q 002974 361 NQGTLVVFNLD-SSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (861)
Q Consensus 361 ~~~tLfVgNLp-~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~~ 439 (861)
...+|||+||+ ..+++++|+++|++||.|.+|++...++|||||+|.+.++|++|++.|||..+.|++|+|.+++.+..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 35789999999 89999999999999999999999877899999999999999999999999999999999999975431
Q ss_pred hhh-----c------hh-----------hhhhhc------cccCC-CCCCCCCCcccc----CCcccE--EEEe--CCCC
Q 002974 440 RRF-----M------VQ-----------SEQEQD------DLNLC-QIPFDDLSSGQM----VSSGVI--TSTC--MDNG 482 (861)
Q Consensus 440 rrl-----~------qq-----------~eq~q~------E~~vg-kNLp~s~tee~L----s~fG~I--~Sv~--~enG 482 (861)
... . +. ...... ...++ +||+.++++++| .+||.| .+++ ...|
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~ 162 (205)
T 3tyt_A 83 MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKS 162 (205)
T ss_dssp CCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCS
T ss_pred CCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCC
Confidence 100 0 00 000000 01133 899999999999 899998 7777 3345
Q ss_pred Cccee
Q 002974 483 SIQVL 487 (861)
Q Consensus 483 ~srGF 487 (861)
..+||
T Consensus 163 ~~~g~ 167 (205)
T 3tyt_A 163 ERSSS 167 (205)
T ss_dssp SSSEE
T ss_pred CCceE
Confidence 55565
No 46
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4.5e-15 Score=134.13 Aligned_cols=85 Identities=24% Similarity=0.370 Sum_probs=77.6
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceee
Q 002974 271 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (861)
Q Consensus 271 ~~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~ 345 (861)
+....+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|+.|+
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 445667899999999999999999999999999999986 367899999999999999999999999999999999
Q ss_pred eeecCCCCCC
Q 002974 346 IHYSIPKDNP 355 (861)
Q Consensus 346 V~~a~~k~~~ 355 (861)
|.++.++...
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dnm_A 87 VQVARYGRRD 96 (103)
T ss_dssp EEECSSCCSC
T ss_pred EEECCcCCCC
Confidence 9999876543
No 47
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=7.1e-15 Score=130.55 Aligned_cols=81 Identities=25% Similarity=0.445 Sum_probs=75.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeec
Q 002974 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (861)
Q Consensus 275 ~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a 349 (861)
.++++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46899999999999999999999999999999985 4678999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 002974 350 IPKDNP 355 (861)
Q Consensus 350 ~~k~~~ 355 (861)
.++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 887654
No 48
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.59 E-value=2.7e-15 Score=147.59 Aligned_cols=123 Identities=18% Similarity=0.270 Sum_probs=73.4
Q ss_pred EEeCCHHHHHHHHHHcCccccC--cceeeeeecCCCC----------------CCCCcccCCcceEEecccCCCcHHHHH
Q 002974 319 ISYYDIRAARNAMKALQNKPLR--RRKLDIHYSIPKD----------------NPSEKDANQGTLVVFNLDSSVSTEELH 380 (861)
Q Consensus 319 VeF~d~e~A~kALkaLnG~~L~--Gr~L~V~~a~~k~----------------~~~~k~~~~~tLfVgNLp~svTeedLr 380 (861)
.+|++.++|+.|+..|++.... |+.+...+..... ..+......++|||+|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6899999999999999987765 6666665532210 011123345689999999999999999
Q ss_pred HHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCchhh
Q 002974 381 QIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARR 441 (861)
Q Consensus 381 elFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~~rr 441 (861)
++|++||.|..|.+ ++..+|||||+|.+.++|++||+.|||..|.|++|+|.|+.++..++
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 99999999999886 34468999999999999999999999999999999999998876544
No 49
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.58 E-value=5.1e-15 Score=128.09 Aligned_cols=77 Identities=29% Similarity=0.477 Sum_probs=72.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCC
Q 002974 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (861)
Q Consensus 277 srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~ 351 (861)
+.+|||+|||.++++++|+++|++||.|..+++ +++++|||||+|.+.++|++|++.|+|..+.|+.|+|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 468999999999999999999999999999985 577899999999999999999999999999999999999987
Q ss_pred CC
Q 002974 352 KD 353 (861)
Q Consensus 352 k~ 353 (861)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 50
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.58 E-value=4.2e-15 Score=137.74 Aligned_cols=81 Identities=21% Similarity=0.300 Sum_probs=74.8
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Ak 435 (861)
..++|||+||++.+++++|+++|++||+|++|++ +++++|||||+|.+.++|++|++.|||..|.|++|+|+++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4579999999999999999999999999999986 46789999999999999999999999999999999999998
Q ss_pred CCchhh
Q 002974 436 PGGARR 441 (861)
Q Consensus 436 pk~~rr 441 (861)
.+..++
T Consensus 85 ~~~~~~ 90 (110)
T 3s8s_A 85 KGQQRM 90 (110)
T ss_dssp TTHHHH
T ss_pred CCcHHH
Confidence 776544
No 51
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.58 E-value=6.9e-15 Score=129.87 Aligned_cols=83 Identities=20% Similarity=0.322 Sum_probs=76.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeec
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki---tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a 349 (861)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..+.|+.|+|.++
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3456899999999999999999999999999999985 5678999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 002974 350 IPKDNP 355 (861)
Q Consensus 350 ~~k~~~ 355 (861)
.++..+
T Consensus 84 ~~~~~~ 89 (92)
T 2dgv_A 84 RNASGP 89 (92)
T ss_dssp SCCSSC
T ss_pred CCCCCC
Confidence 876543
No 52
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.58 E-value=3.9e-15 Score=129.90 Aligned_cols=78 Identities=21% Similarity=0.430 Sum_probs=71.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeec
Q 002974 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (861)
Q Consensus 275 ~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a 349 (861)
.+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..+.|+.|+|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 46889999999999999999999999999999985 5678999999999999999999999999999999999999
Q ss_pred CCC
Q 002974 350 IPK 352 (861)
Q Consensus 350 ~~k 352 (861)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 53
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=8.9e-15 Score=132.68 Aligned_cols=84 Identities=25% Similarity=0.483 Sum_probs=76.9
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe------CCCcccEEEEEeCCHHHHHHHHHHc-CccccCccee
Q 002974 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT------ACKHRGFVMISYYDIRAARNAMKAL-QNKPLRRRKL 344 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki------tgksrGyAFVeF~d~e~A~kALkaL-nG~~L~Gr~L 344 (861)
....+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.| ++..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 35567899999999999999999999999999999986 4567999999999999999999999 9999999999
Q ss_pred eeeecCCCCCC
Q 002974 345 DIHYSIPKDNP 355 (861)
Q Consensus 345 ~V~~a~~k~~~ 355 (861)
+|.|+.++...
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999887554
No 54
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=7.4e-15 Score=132.69 Aligned_cols=83 Identities=18% Similarity=0.406 Sum_probs=77.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeec
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki---tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a 349 (861)
...+.++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|+|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 4557999999999999999999999999999999986 4678999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 002974 350 IPKDNP 355 (861)
Q Consensus 350 ~~k~~~ 355 (861)
.++..+
T Consensus 91 ~~~~~~ 96 (103)
T 2d9p_A 91 QRKEER 96 (103)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 887654
No 55
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6.4e-15 Score=133.10 Aligned_cols=84 Identities=24% Similarity=0.455 Sum_probs=77.3
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeee
Q 002974 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V 346 (861)
....+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34567899999999999999999999999999999985 5678999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 002974 347 HYSIPKDNP 355 (861)
Q Consensus 347 ~~a~~k~~~ 355 (861)
.|+.++...
T Consensus 90 ~~a~~~~~~ 98 (103)
T 2cq0_A 90 EWAKPSTNS 98 (103)
T ss_dssp EESSCCCCS
T ss_pred EECCCCCCC
Confidence 999877554
No 56
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.8e-15 Score=140.03 Aligned_cols=92 Identities=22% Similarity=0.329 Sum_probs=78.2
Q ss_pred cccCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCc--cccCcc
Q 002974 265 SVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQN--KPLRRR 342 (861)
Q Consensus 265 ~~~Ge~~~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG--~~L~Gr 342 (861)
...++......++++|||+|||++++|++|+++|++||.|..|++ .+.||||||+|.+.++|++|++.|++ ..|.|+
T Consensus 19 ~~~~~~~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i-~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr 97 (119)
T 2ad9_A 19 SHMGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLM-LKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ 97 (119)
T ss_dssp ---CCTTSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEE-EGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTB
T ss_pred cccccccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCCEEEEEECCHHHHHHHHHHhccCCceECCe
Confidence 344455556678999999999999999999999999999999997 34589999999999999999999985 579999
Q ss_pred eeeeeecCCCCCCCC
Q 002974 343 KLDIHYSIPKDNPSE 357 (861)
Q Consensus 343 ~L~V~~a~~k~~~~~ 357 (861)
+|+|.|+.++.....
T Consensus 98 ~l~V~~a~~k~~~~~ 112 (119)
T 2ad9_A 98 PIYIQFSNHKELKTD 112 (119)
T ss_dssp CCEEEECSSSSCCCC
T ss_pred EEEEEEccCCCCCcc
Confidence 999999988765543
No 57
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.58 E-value=7.3e-15 Score=135.51 Aligned_cols=84 Identities=17% Similarity=0.345 Sum_probs=77.0
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeee
Q 002974 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V 346 (861)
....+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34557899999999999999999999999999999885 5788999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 002974 347 HYSIPKDNP 355 (861)
Q Consensus 347 ~~a~~k~~~ 355 (861)
.|+.++...
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpz_A 100 QLKRSKNDS 108 (115)
T ss_dssp ECCCCSCCC
T ss_pred EEcCCCCcC
Confidence 999887654
No 58
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.5e-14 Score=130.76 Aligned_cols=84 Identities=21% Similarity=0.385 Sum_probs=76.5
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki---tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
....+.++|||+|||.++++++|+++|++||.|..|++ ...++|||||+|.+.++|++|++.|++..|.|+.|+|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35567899999999999999999999999999999986 234799999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 002974 349 SIPKDNP 355 (861)
Q Consensus 349 a~~k~~~ 355 (861)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9887654
No 59
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=8.7e-15 Score=133.74 Aligned_cols=83 Identities=16% Similarity=0.325 Sum_probs=76.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe--CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecC
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki--tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~ 350 (861)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|+|.|+.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 4567899999999999999999999999999999986 45678999999999999999999999999999999999998
Q ss_pred CCCCC
Q 002974 351 PKDNP 355 (861)
Q Consensus 351 ~k~~~ 355 (861)
++...
T Consensus 98 ~~~~~ 102 (109)
T 1x4a_A 98 SGRGT 102 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 76543
No 60
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=7.4e-15 Score=130.17 Aligned_cols=78 Identities=23% Similarity=0.432 Sum_probs=72.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~ 347 (861)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 4567899999999999999999999999999999986 36788999999999999999999999999999999999
Q ss_pred ecC
Q 002974 348 YSI 350 (861)
Q Consensus 348 ~a~ 350 (861)
|++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
No 61
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.2e-14 Score=131.25 Aligned_cols=84 Identities=18% Similarity=0.421 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki---tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
....+.++|||+|||+++++++|+++|++||.|..|++ ...++|||||+|.+.++|++|++.|++..|.|+.|+|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 35567899999999999999999999999999999986 344789999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 002974 349 SIPKDNP 355 (861)
Q Consensus 349 a~~k~~~ 355 (861)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9876543
No 62
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6e-15 Score=133.80 Aligned_cols=82 Identities=17% Similarity=0.432 Sum_probs=75.6
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeee
Q 002974 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V 346 (861)
....+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..+.|+.|+|
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 34567899999999999999999999999999999985 4778999999999999999999999999999999999
Q ss_pred eecCCCC
Q 002974 347 HYSIPKD 353 (861)
Q Consensus 347 ~~a~~k~ 353 (861)
.|+.++.
T Consensus 98 ~~a~~~~ 104 (106)
T 1p27_B 98 DWCFVRG 104 (106)
T ss_dssp EESEESS
T ss_pred EeecCCC
Confidence 9998654
No 63
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.58 E-value=6.2e-15 Score=131.75 Aligned_cols=79 Identities=22% Similarity=0.428 Sum_probs=73.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecC
Q 002974 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (861)
Q Consensus 276 ~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~ 350 (861)
++++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..+.|+.|+|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 5789999999999999999999999999999986 46789999999999999999999999999999999999998
Q ss_pred CCCC
Q 002974 351 PKDN 354 (861)
Q Consensus 351 ~k~~ 354 (861)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7643
No 64
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=9.5e-15 Score=134.41 Aligned_cols=82 Identities=17% Similarity=0.262 Sum_probs=73.6
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCcc--ccCcceeeeeec
Q 002974 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNK--PLRRRKLDIHYS 349 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~--~L~Gr~L~V~~a 349 (861)
....++++|||+|||+++++++|+++|++||.|..|++ .+.||||||+|.+.++|++|++.|++. .|.|++|+|.|+
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i-~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMM-MPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE-ECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 45567899999999999999999999999999999997 345899999999999999999998765 489999999999
Q ss_pred CCCCC
Q 002974 350 IPKDN 354 (861)
Q Consensus 350 ~~k~~ 354 (861)
..+..
T Consensus 89 ~~~~~ 93 (104)
T 1wex_A 89 TSKRI 93 (104)
T ss_dssp SSSSC
T ss_pred cCccc
Confidence 87654
No 65
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.57 E-value=1.4e-14 Score=131.05 Aligned_cols=83 Identities=19% Similarity=0.330 Sum_probs=75.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHcCccccCc---ceee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRR---RKLD 345 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~G---r~L~ 345 (861)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..+.| +.|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3456899999999999999999999999999999985 46779999999999999999999999999998 9999
Q ss_pred eeecCCCCCC
Q 002974 346 IHYSIPKDNP 355 (861)
Q Consensus 346 V~~a~~k~~~ 355 (861)
|.|+.++..+
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9999876554
No 66
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.57 E-value=7.3e-15 Score=127.65 Aligned_cols=77 Identities=29% Similarity=0.484 Sum_probs=72.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
..+.++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..+.|++|+|.|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 457899999999999999999999999999999985 566899999999999999999999999999999999999
Q ss_pred cC
Q 002974 349 SI 350 (861)
Q Consensus 349 a~ 350 (861)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 67
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.5e-14 Score=131.95 Aligned_cols=84 Identities=21% Similarity=0.455 Sum_probs=77.3
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcC------ccccC
Q 002974 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQ------NKPLR 340 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLn------G~~L~ 340 (861)
....+.++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+ +..|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 35567899999999999999999999999999999986 36789999999999999999999999 99999
Q ss_pred cceeeeeecCCCCCC
Q 002974 341 RRKLDIHYSIPKDNP 355 (861)
Q Consensus 341 Gr~L~V~~a~~k~~~ 355 (861)
|+.|+|.|+.++...
T Consensus 90 g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCEEEEECCCCCCCC
T ss_pred CEEEEEEECCCCccC
Confidence 999999999887654
No 68
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=9e-15 Score=130.79 Aligned_cols=81 Identities=27% Similarity=0.459 Sum_probs=74.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe--------CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeee
Q 002974 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT--------ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (861)
Q Consensus 275 ~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki--------tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V 346 (861)
.+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 46899999999999999999999999999999985 2278899999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 002974 347 HYSIPKDNP 355 (861)
Q Consensus 347 ~~a~~k~~~ 355 (861)
.++.++...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876554
No 69
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=9.1e-15 Score=129.63 Aligned_cols=80 Identities=18% Similarity=0.362 Sum_probs=74.0
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeee
Q 002974 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V 346 (861)
....+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..+.|++|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567899999999999999999999999999999985 4678999999999999999999999999999999999
Q ss_pred eecCC
Q 002974 347 HYSIP 351 (861)
Q Consensus 347 ~~a~~ 351 (861)
.|+..
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99864
No 70
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.57 E-value=6.2e-15 Score=154.84 Aligned_cols=114 Identities=18% Similarity=0.226 Sum_probs=101.5
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~ 438 (861)
....++|||+|||.++|+++|+++|++||.|..|++. +.+|||||+|.+.++|.+|+..|+|..|.|+.|+|.++.+..
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~-~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 97 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN-RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGA 97 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCC
Confidence 3456799999999999999999999999999999974 579999999999999999999999999999999999998642
Q ss_pred hhhhchhhhhhhccccCCCCCCCCCCcccc----CCcccEEEEe---CCCCCccee
Q 002974 439 ARRFMVQSEQEQDDLNLCQIPFDDLSSGQM----VSSGVITSTC---MDNGSIQVL 487 (861)
Q Consensus 439 ~rrl~qq~eq~q~E~~vgkNLp~s~tee~L----s~fG~I~Sv~---~enG~srGF 487 (861)
....+||+.++++++| ..||.|..+. ..+|+++||
T Consensus 98 --------------~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~ 139 (261)
T 3sde_A 98 --------------ALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGK 139 (261)
T ss_dssp --------------EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEE
T ss_pred --------------cccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcE
Confidence 1222899999999999 8999999887 678889987
No 71
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=8.3e-15 Score=131.96 Aligned_cols=83 Identities=20% Similarity=0.446 Sum_probs=76.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~ 347 (861)
...+.++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4457899999999999999999999999999999986 45689999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 002974 348 YSIPKDNP 355 (861)
Q Consensus 348 ~a~~k~~~ 355 (861)
++.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 72
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.2e-14 Score=130.23 Aligned_cols=81 Identities=23% Similarity=0.362 Sum_probs=74.8
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~A 434 (861)
...++|||+|||..+++++|+++|++||+|..|++ +++.+|||||+|.+.++|++|++.||+..|.|++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45689999999999999999999999999999987 4556899999999999999999999999999999999999
Q ss_pred cCCchh
Q 002974 435 RPGGAR 440 (861)
Q Consensus 435 kpk~~r 440 (861)
+++..+
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 988643
No 73
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.8e-15 Score=131.34 Aligned_cols=81 Identities=22% Similarity=0.457 Sum_probs=74.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEE-Ee-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTI-YT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 275 ~~srtLfVgNLP~~vTEedL~elFsqfG~I~sv-ki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
.+.++|||+|||.++++++|+++|++||.|..| ++ +++++|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 468999999999999999999999999999888 64 466899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 002974 349 SIPKDNP 355 (861)
Q Consensus 349 a~~k~~~ 355 (861)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9887654
No 74
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.9e-14 Score=128.88 Aligned_cols=81 Identities=27% Similarity=0.467 Sum_probs=74.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccC--cceeeeeecC
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLR--RRKLDIHYSI 350 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~--Gr~L~V~~a~ 350 (861)
...+.++|||+|||.++++++|+++|++||.|..|++.. .+|||||+|.+.++|++|++.|++..+. |+.|+|.|+.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK-GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS-SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC-CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 345689999999999999999999999999999999843 4899999999999999999999999999 9999999998
Q ss_pred CCCC
Q 002974 351 PKDN 354 (861)
Q Consensus 351 ~k~~ 354 (861)
++..
T Consensus 92 ~~~~ 95 (97)
T 1why_A 92 SGPS 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7644
No 75
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.5e-15 Score=132.24 Aligned_cols=83 Identities=28% Similarity=0.445 Sum_probs=76.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~ 347 (861)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|+|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3457899999999999999999999999999999986 46689999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 002974 348 YSIPKDNP 355 (861)
Q Consensus 348 ~a~~k~~~ 355 (861)
++.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99887654
No 76
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.56 E-value=7.5e-15 Score=130.39 Aligned_cols=81 Identities=23% Similarity=0.356 Sum_probs=73.4
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeee
Q 002974 271 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (861)
Q Consensus 271 ~~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V 346 (861)
+....+.++|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 345667899999999999999999999999999999985 4667999999999999999999999999999999999
Q ss_pred eecCC
Q 002974 347 HYSIP 351 (861)
Q Consensus 347 ~~a~~ 351 (861)
.++..
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99853
No 77
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.8e-14 Score=129.55 Aligned_cols=82 Identities=20% Similarity=0.316 Sum_probs=74.8
Q ss_pred cccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC----CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 358 k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit----gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
.....++|||+|||..+++++|+++|++||.|..|++. ++.+|||||+|.+.++|++|++.||+..|.|++|+|++
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999998863 45679999999999999999999999999999999999
Q ss_pred ccCCch
Q 002974 434 SRPGGA 439 (861)
Q Consensus 434 Akpk~~ 439 (861)
++++..
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 998763
No 78
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.56 E-value=7.1e-15 Score=142.34 Aligned_cols=118 Identities=19% Similarity=0.253 Sum_probs=98.3
Q ss_pred CcceEEecccCCCcHHHHHHHhcccCcEEEEEeC-----C--CCccEEEEEECCHHHHHHHHHHhCCCeeC---CcEEEE
Q 002974 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----Q--HKHNHKFIEFYDIRAAETALRTLNRSDVA---GKQIKL 431 (861)
Q Consensus 362 ~~tLfVgNLp~svTeedLrelFskfGeI~sVrit-----g--ksKGfAFVeF~d~eaA~kAL~~LNG~~I~---Gr~IkV 431 (861)
.++|||+|||.++++++|+++|++||+|.+|++. + +++|||||+|.+.++|++|++.|++..+. ++.+.+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 5789999999999999999999999999998762 1 57899999999999999999999998876 688888
Q ss_pred EeccCCchhhhchhhhhhhccccCC-CCCCCCCCcccc----CCcccEEEEe---CCCCCccee
Q 002974 432 EASRPGGARRFMVQSEQEQDDLNLC-QIPFDDLSSGQM----VSSGVITSTC---MDNGSIQVL 487 (861)
Q Consensus 432 e~Akpk~~rrl~qq~eq~q~E~~vg-kNLp~s~tee~L----s~fG~I~Sv~---~enG~srGF 487 (861)
.++.+..... .....+. +||+.++++++| .+||.|.+++ ..+|.++||
T Consensus 83 ~~~~~~~~~~--------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~ 138 (175)
T 3nmr_A 83 KPADSEKNNA--------VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGC 138 (175)
T ss_dssp EECGGGCCSC--------GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEE
T ss_pred cccccccccc--------CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEE
Confidence 8876543211 1222344 999999999999 8999999887 567888887
No 79
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.6e-14 Score=132.33 Aligned_cols=83 Identities=25% Similarity=0.341 Sum_probs=73.7
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcC--ccccCcceeeeeec
Q 002974 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQ--NKPLRRRKLDIHYS 349 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLn--G~~L~Gr~L~V~~a 349 (861)
....++++|||+|||+++++++|+++|++||.|..|++. +.||||||+|.+.++|++|++.|+ +..+.|++|+|.|+
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILML-KGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-CCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 345678999999999999999999999999999999873 459999999999999999999875 56799999999999
Q ss_pred CCCCCC
Q 002974 350 IPKDNP 355 (861)
Q Consensus 350 ~~k~~~ 355 (861)
.++...
T Consensus 89 ~~~~~~ 94 (101)
T 2cq1_A 89 NHKELK 94 (101)
T ss_dssp SCSSCC
T ss_pred CcccCc
Confidence 876543
No 80
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=133.85 Aligned_cols=82 Identities=23% Similarity=0.459 Sum_probs=75.6
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeee
Q 002974 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V 346 (861)
....+.++|||+|||..+++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|+.|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34567899999999999999999999999999999985 4678999999999999999999999999999999999
Q ss_pred eecCCCC
Q 002974 347 HYSIPKD 353 (861)
Q Consensus 347 ~~a~~k~ 353 (861)
.++.++.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9998764
No 81
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=7.6e-15 Score=134.95 Aligned_cols=80 Identities=16% Similarity=0.190 Sum_probs=72.5
Q ss_pred CCCCCcEEEEcCCCC-CCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccc--cCcceeeeeec
Q 002974 273 GEHPSRTLFVRNINS-NVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKP--LRRRKLDIHYS 349 (861)
Q Consensus 273 ~~~~srtLfVgNLP~-~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~--L~Gr~L~V~~a 349 (861)
...++++|||+|||+ ++++++|+++|++||.|..|++ .+.+|||||+|.+.++|++|++.|++.. |.|++|+|.|+
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i-~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 89 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLI-LNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS 89 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEE-CSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEE-EcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence 345799999999999 9999999999999999999998 4567999999999999999999998754 99999999999
Q ss_pred CCCC
Q 002974 350 IPKD 353 (861)
Q Consensus 350 ~~k~ 353 (861)
..+.
T Consensus 90 ~~~~ 93 (102)
T 1x4d_A 90 QKYK 93 (102)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 8654
No 82
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.56 E-value=1.2e-14 Score=131.73 Aligned_cols=84 Identities=25% Similarity=0.475 Sum_probs=76.6
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCcccc---Ccce
Q 002974 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPL---RRRK 343 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L---~Gr~ 343 (861)
....+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..+ .|+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 35667899999999999999999999999999999985 467899999999999999999999999987 8999
Q ss_pred eeeeecCCCCCC
Q 002974 344 LDIHYSIPKDNP 355 (861)
Q Consensus 344 L~V~~a~~k~~~ 355 (861)
|+|.++.++...
T Consensus 88 l~v~~a~~~~~~ 99 (106)
T 2dgp_A 88 IQVKPADSESRG 99 (106)
T ss_dssp CEEEECCCCSCC
T ss_pred EEEEECCccccc
Confidence 999999876543
No 83
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.5e-14 Score=128.33 Aligned_cols=82 Identities=20% Similarity=0.368 Sum_probs=75.3
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecC
Q 002974 271 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (861)
Q Consensus 271 ~~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~ 350 (861)
.....+.++|||+|||.++++++|+++|++||.|..|++. ++||||+|.+.++|++|++.|++..+.|+.|+|.++.
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 4456779999999999999999999999999999999983 6699999999999999999999999999999999998
Q ss_pred CCCCC
Q 002974 351 PKDNP 355 (861)
Q Consensus 351 ~k~~~ 355 (861)
++...
T Consensus 81 ~~~~~ 85 (92)
T 2dgt_A 81 SRLRT 85 (92)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 76543
No 84
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=127.39 Aligned_cols=80 Identities=23% Similarity=0.413 Sum_probs=74.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCC
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k 352 (861)
...+.++|||+|||.++++++|+++|++||.|..|++. +|||||+|.+.++|++|++.|++..+.|++|+|.|+.++
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK 80 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence 34578999999999999999999999999999999984 899999999999999999999999999999999999877
Q ss_pred CCC
Q 002974 353 DNP 355 (861)
Q Consensus 353 ~~~ 355 (861)
...
T Consensus 81 ~~~ 83 (90)
T 2dnq_A 81 SKA 83 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 85
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.55 E-value=1.2e-14 Score=138.23 Aligned_cols=83 Identities=20% Similarity=0.425 Sum_probs=76.6
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceee
Q 002974 271 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (861)
Q Consensus 271 ~~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~ 345 (861)
.....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..|.|++|+
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 345677899999999999999999999999999999986 467899999999999999999999999999999999
Q ss_pred eeecCCCC
Q 002974 346 IHYSIPKD 353 (861)
Q Consensus 346 V~~a~~k~ 353 (861)
|.|+.++.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99998754
No 86
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.55 E-value=1.3e-14 Score=132.62 Aligned_cols=83 Identities=19% Similarity=0.390 Sum_probs=76.1
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeee
Q 002974 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V 346 (861)
....+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|+.|+|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34567899999999999999999999999999999986 4678999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 002974 347 HYSIPKDN 354 (861)
Q Consensus 347 ~~a~~k~~ 354 (861)
.|+.++..
T Consensus 101 ~~a~~~~~ 108 (110)
T 1oo0_B 101 DWCFVKGP 108 (110)
T ss_dssp EESEESSC
T ss_pred EEcccCCC
Confidence 99986543
No 87
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.8e-14 Score=130.23 Aligned_cols=83 Identities=20% Similarity=0.380 Sum_probs=76.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhc-CCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHcCccc-cCcceeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQ-FGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKP-LRRRKLDI 346 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsq-fG~I~svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~-L~Gr~L~V 346 (861)
...+.++|||+|||.++++++|+++|++ ||.|..|++ +++++|||||+|.+.++|++|++.|++.. +.|+.|+|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 4567899999999999999999999999 999999986 57789999999999999999999999999 99999999
Q ss_pred eecCCCCCC
Q 002974 347 HYSIPKDNP 355 (861)
Q Consensus 347 ~~a~~k~~~ 355 (861)
.++.++...
T Consensus 85 ~~a~~~~~~ 93 (104)
T 2dhg_A 85 SVAIPKASR 93 (104)
T ss_dssp CBCCCCCSC
T ss_pred EEccCCCcC
Confidence 999876554
No 88
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.2e-14 Score=131.10 Aligned_cols=81 Identities=30% Similarity=0.445 Sum_probs=73.9
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe--CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD--TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri--tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akp 436 (861)
....++|||+|||..+++++|+++|++||.|+.|++ .++.++||||+|.+.++|++|++.||+..|.|++|+|+++++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 445789999999999999999999999999999887 344689999999999999999999999999999999999988
Q ss_pred Cch
Q 002974 437 GGA 439 (861)
Q Consensus 437 k~~ 439 (861)
+..
T Consensus 99 ~~~ 101 (109)
T 1x4a_A 99 GRG 101 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 89
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.8e-14 Score=130.19 Aligned_cols=84 Identities=23% Similarity=0.299 Sum_probs=76.2
Q ss_pred cccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC---CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 002974 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT---QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (861)
Q Consensus 358 k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit---gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~A 434 (861)
.....++|||+|||+.+++++|+++|++||+|..|++. +..++||||+|.+.++|++|++.||+..|.|++|+|+++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 34567899999999999999999999999999998863 467899999999999999999999999999999999999
Q ss_pred cCCchhh
Q 002974 435 RPGGARR 441 (861)
Q Consensus 435 kpk~~rr 441 (861)
+++..+.
T Consensus 91 ~~~~~~~ 97 (103)
T 2d9p_A 91 QRKEERQ 97 (103)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9876443
No 90
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.55 E-value=6.9e-15 Score=132.01 Aligned_cols=73 Identities=21% Similarity=0.294 Sum_probs=69.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeec
Q 002974 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (861)
Q Consensus 276 ~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a 349 (861)
.+..|||+||++.+||++|+++|.+||+|.++++ ..+||||||+|.+.++|++|++.||+..+.||+|+|+++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l-~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHP-YLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEE-cCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 4789999999999999999999999999999997 458999999999999999999999999999999999987
No 91
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.3e-14 Score=126.22 Aligned_cols=78 Identities=23% Similarity=0.414 Sum_probs=72.1
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHc-CccccCcceeeeeecC
Q 002974 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKAL-QNKPLRRRKLDIHYSI 350 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaL-nG~~L~Gr~L~V~~a~ 350 (861)
....+.++|||+|||.++++++|+++|++||.|..|++ .+++|||||+|.+.++|++|++.| ++..+.|++|+|.|++
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~-~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITV-VQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEE-EGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEE-ECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 34567899999999999999999999999999999997 357899999999999999999999 9999999999999974
No 92
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.2e-14 Score=130.04 Aligned_cols=83 Identities=17% Similarity=0.369 Sum_probs=75.5
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----C-CCcccEEEEEeCCHHHHHHHHHHcCccccCccee
Q 002974 271 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----A-CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKL 344 (861)
Q Consensus 271 ~~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----t-gksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L 344 (861)
+....+.++|||+|||.++++++|+++|++|| |..|++ + ++++|||||+|.+.++|++|+ .|++..|.|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 34556789999999999999999999999999 999986 2 778999999999999999999 899999999999
Q ss_pred eeeecCCCCCC
Q 002974 345 DIHYSIPKDNP 355 (861)
Q Consensus 345 ~V~~a~~k~~~ 355 (861)
+|.++.++...
T Consensus 87 ~V~~a~~~~~~ 97 (104)
T 1wi8_A 87 RVDVADQAQDK 97 (104)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999887654
No 93
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.55 E-value=1.3e-14 Score=126.51 Aligned_cols=77 Identities=21% Similarity=0.362 Sum_probs=69.9
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Ak 435 (861)
..++|||+|||..+++++|+++|++||.|.+|++ ++..+|||||+|.+.++|++|++.|||..+.|++|+|++++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 4578999999999999999999999999999886 44568999999999999999999999999999999999998
Q ss_pred CC
Q 002974 436 PG 437 (861)
Q Consensus 436 pk 437 (861)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 75
No 94
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.55 E-value=3e-15 Score=169.63 Aligned_cols=146 Identities=20% Similarity=0.331 Sum_probs=106.2
Q ss_pred HHHHHhhcCCCEEEEEe-------CCCcccEE-----EEEeCCHHHHHHHHHHcCccccCccee-------------eee
Q 002974 293 ELKALFEQFGDIRTIYT-------ACKHRGFV-----MISYYDIRAARNAMKALQNKPLRRRKL-------------DIH 347 (861)
Q Consensus 293 dL~elFsqfG~I~svki-------tgksrGyA-----FVeF~d~e~A~kALkaLnG~~L~Gr~L-------------~V~ 347 (861)
.|.+||.++|+|..|.. ..+..+|+ |+.|....++..++..++......+.. .+.
T Consensus 8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~ 87 (437)
T 3pgw_S 8 NLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELK 87 (437)
T ss_pred cHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 37899999999988831 11334444 888887666655554333322221100 011
Q ss_pred ecCCCCCCCCcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCC
Q 002974 348 YSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRS 422 (861)
Q Consensus 348 ~a~~k~~~~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~ 422 (861)
...+...........++|||+|||+.+|+++|+++|++||.|+.|.+ +++++|||||+|.+.++|++||..|||.
T Consensus 88 ~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 167 (437)
T 3pgw_S 88 MWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK 167 (437)
T ss_pred hcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC
Confidence 11122222222344679999999999999999999999999999987 4567999999999999999999999999
Q ss_pred eeCCcEEEEEeccCCc
Q 002974 423 DVAGKQIKLEASRPGG 438 (861)
Q Consensus 423 ~I~Gr~IkVe~Akpk~ 438 (861)
.|.|+.|+|.++.++.
T Consensus 168 ~i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 168 KIDGRRVLVDVERGRT 183 (437)
T ss_pred EECCEEEEEEEeCCCC
Confidence 9999999999999765
No 95
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.55 E-value=3.1e-15 Score=133.59 Aligned_cols=76 Identities=16% Similarity=0.335 Sum_probs=69.4
Q ss_pred cceEEecccCCCcHHHHHHHhcccC-cEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhC-CCeeCCcEEEEEecc
Q 002974 363 GTLVVFNLDSSVSTEELHQIFGIYG-EIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLN-RSDVAGKQIKLEASR 435 (861)
Q Consensus 363 ~tLfVgNLp~svTeedLrelFskfG-eI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LN-G~~I~Gr~IkVe~Ak 435 (861)
++|||+|||.++|+++|+++|++|| +|++|++ +++++|||||+|.+.++|++|++.++ +..+.|++|+|++++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5899999999999999999999999 8999876 46779999999999999999999875 568999999999999
Q ss_pred CCc
Q 002974 436 PGG 438 (861)
Q Consensus 436 pk~ 438 (861)
++.
T Consensus 82 ~~~ 84 (91)
T 2lxi_A 82 PKP 84 (91)
T ss_dssp SCC
T ss_pred CCC
Confidence 875
No 96
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=2.4e-14 Score=129.81 Aligned_cols=83 Identities=19% Similarity=0.416 Sum_probs=75.2
Q ss_pred cccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCC------CCccEEEEEECCHHHHHHHHHHh-CCCeeCCcEEE
Q 002974 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ------HKHNHKFIEFYDIRAAETALRTL-NRSDVAGKQIK 430 (861)
Q Consensus 358 k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritg------ksKGfAFVeF~d~eaA~kAL~~L-NG~~I~Gr~Ik 430 (861)
.....++|||+|||..+++++|+++|++||.|+.|++.. ..+|||||+|.+.++|++|++.| |+..|.|++|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 345678999999999999999999999999999998743 35899999999999999999999 99999999999
Q ss_pred EEeccCCchh
Q 002974 431 LEASRPGGAR 440 (861)
Q Consensus 431 Ve~Akpk~~r 440 (861)
|++++++..+
T Consensus 91 v~~a~~~~~~ 100 (107)
T 2cph_A 91 LEWADSEVTV 100 (107)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999987643
No 97
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.55 E-value=1.7e-14 Score=124.76 Aligned_cols=76 Identities=18% Similarity=0.247 Sum_probs=71.0
Q ss_pred cceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 002974 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (861)
Q Consensus 363 ~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk 437 (861)
.+|||+|||..+++++|+++|++||.|.+|++ +++++|||||+|.+.++|++|++.|||..+.|++|+|++++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 57999999999999999999999999999876 3556899999999999999999999999999999999999986
Q ss_pred c
Q 002974 438 G 438 (861)
Q Consensus 438 ~ 438 (861)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 98
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.5e-14 Score=131.07 Aligned_cols=83 Identities=19% Similarity=0.395 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeee
Q 002974 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V 346 (861)
....+.++|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++. ++..|.|+.|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 35667899999999999999999999999999999985 567899999999999999999998 999999999999
Q ss_pred eecCCCCCC
Q 002974 347 HYSIPKDNP 355 (861)
Q Consensus 347 ~~a~~k~~~ 355 (861)
.++.++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 2dh8_A 90 KPCTPRGMQ 98 (105)
T ss_dssp CCSCCSSCC
T ss_pred EEccCCCCC
Confidence 999887654
No 99
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.3e-14 Score=130.32 Aligned_cols=81 Identities=26% Similarity=0.481 Sum_probs=75.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCC
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k 352 (861)
...+.++|||+|||+++++++|+++|++||.|..|++ .+.+|||||+|.+.++|++|++.|+|..|.|++|+|.|+.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~-~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI-HKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEE-ETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEE-ecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 4467899999999999999999999999999999998 456899999999999999999999999999999999999876
Q ss_pred CC
Q 002974 353 DN 354 (861)
Q Consensus 353 ~~ 354 (861)
..
T Consensus 90 ~~ 91 (99)
T 2cpj_A 90 AS 91 (99)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 100
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.8e-14 Score=128.92 Aligned_cols=83 Identities=27% Similarity=0.401 Sum_probs=74.9
Q ss_pred cccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC---CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 002974 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT---QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (861)
Q Consensus 358 k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit---gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~A 434 (861)
.....++|||+|||..+++++|+++|++||.|+.|++. ..++|||||+|.+.++|++|++.||+..|.|++|+|+++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 34567899999999999999999999999999999873 236799999999999999999999999999999999999
Q ss_pred cCCchh
Q 002974 435 RPGGAR 440 (861)
Q Consensus 435 kpk~~r 440 (861)
+++..+
T Consensus 91 ~~~~~~ 96 (103)
T 2cqi_A 91 TTPSSQ 96 (103)
T ss_dssp CCTTCC
T ss_pred CCCccc
Confidence 987643
No 101
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.9e-14 Score=131.67 Aligned_cols=83 Identities=25% Similarity=0.394 Sum_probs=75.3
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeee
Q 002974 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V 346 (861)
..+.+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.+++ .|.|+.|+|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 35667899999999999999999999999999999986 467899999999999999999999998 899999999
Q ss_pred eecCCCCCC
Q 002974 347 HYSIPKDNP 355 (861)
Q Consensus 347 ~~a~~k~~~ 355 (861)
.++.++..+
T Consensus 91 ~~a~~~~~~ 99 (116)
T 2cqd_A 91 NLAYLGAKP 99 (116)
T ss_dssp EESTTTCCC
T ss_pred EEcccCCCc
Confidence 999775443
No 102
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.3e-14 Score=129.75 Aligned_cols=82 Identities=22% Similarity=0.317 Sum_probs=75.0
Q ss_pred cccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 002974 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (861)
Q Consensus 358 k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe 432 (861)
.....++|||+|||..+++++|+++|++||.|+.|++ +++.+|||||+|.+.++|++|++.||+..|.|++|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3445789999999999999999999999999999986 45578999999999999999999999999999999999
Q ss_pred eccCCch
Q 002974 433 ASRPGGA 439 (861)
Q Consensus 433 ~Akpk~~ 439 (861)
+++++..
T Consensus 91 ~a~~~~~ 97 (105)
T 1x5u_A 91 KASAHNK 97 (105)
T ss_dssp ETTTTSC
T ss_pred ECCCCCc
Confidence 9998764
No 103
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.54 E-value=7e-15 Score=131.96 Aligned_cols=74 Identities=16% Similarity=0.163 Sum_probs=69.8
Q ss_pred CcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 002974 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (861)
Q Consensus 362 ~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akp 436 (861)
...|||+||++.+|+++|+++|.+||+|+++++. .+||||||+|.+.++|++|++.||+..+.|++|+|++|..
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~-~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e 80 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPY-LNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSE 80 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCH
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEc-CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCH
Confidence 5679999999999999999999999999999975 4899999999999999999999999999999999999943
No 104
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.54 E-value=5.8e-15 Score=133.68 Aligned_cols=79 Identities=15% Similarity=0.335 Sum_probs=70.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCC--EEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCcc----ccCc
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGD--IRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNK----PLRR 341 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~--I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~----~L~G 341 (861)
....-.||||+|||+++|+++|+++|++||. |..|++ ++++||||||+|.+.++|++|++.|||. .|.|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 4556889999999999999999999999995 556763 5889999999999999999999999997 4899
Q ss_pred ceeeeeecCC
Q 002974 342 RKLDIHYSIP 351 (861)
Q Consensus 342 r~L~V~~a~~ 351 (861)
|+|.|+||+.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999864
No 105
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.7e-14 Score=129.27 Aligned_cols=82 Identities=12% Similarity=0.369 Sum_probs=74.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEE-EEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcce---
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIR-TIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRK--- 343 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~-svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~--- 343 (861)
...+.++|||+|||+++++++|+++|++||.|. .|++ +++++|||||+|.+.++|++|++.|+|..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345689999999999999999999999999999 8875 5678999999999999999999999999999999
Q ss_pred -eeeeecCCCCC
Q 002974 344 -LDIHYSIPKDN 354 (861)
Q Consensus 344 -L~V~~a~~k~~ 354 (861)
|+|.|+.+...
T Consensus 85 ~l~v~~a~~~~~ 96 (99)
T 2div_A 85 RFKLNYATYSGP 96 (99)
T ss_dssp ECCEEETTCCSS
T ss_pred eEEEeecCCCCC
Confidence 99999986543
No 106
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.54 E-value=1.7e-14 Score=132.99 Aligned_cols=82 Identities=17% Similarity=0.361 Sum_probs=74.8
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
....++|||+|||.++++++|+++|++||.|++|++ +++.+|||||+|.+.++|++|++.||+..|.|++|+|++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345689999999999999999999999999999876 456689999999999999999999999999999999999
Q ss_pred ccCCchh
Q 002974 434 SRPGGAR 440 (861)
Q Consensus 434 Akpk~~r 440 (861)
++++..+
T Consensus 102 a~~~~~~ 108 (115)
T 2cpz_A 102 KRSKNDS 108 (115)
T ss_dssp CCCSCCC
T ss_pred cCCCCcC
Confidence 9987644
No 107
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.9e-14 Score=130.01 Aligned_cols=82 Identities=21% Similarity=0.311 Sum_probs=74.9
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
....++|||+|||..+++++|+++|++||+|..|++ +++.+|||||+|.+.++|++|++.||+..|.|++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 455789999999999999999999999999999886 345689999999999999999999999999999999999
Q ss_pred ccCCchh
Q 002974 434 SRPGGAR 440 (861)
Q Consensus 434 Akpk~~r 440 (861)
++++..+
T Consensus 92 a~~~~~~ 98 (103)
T 2cq0_A 92 AKPSTNS 98 (103)
T ss_dssp SSCCCCS
T ss_pred CCCCCCC
Confidence 9987643
No 108
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.54 E-value=1.1e-14 Score=129.82 Aligned_cols=82 Identities=24% Similarity=0.400 Sum_probs=76.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCC
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k 352 (861)
...+.++|||+|||.++++++|+++|++||.|..+..+++++|||||+|.+.++|++|++.|+|..|.|+.|+|.++.++
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 45578999999999999999999999999999888778899999999999999999999999999999999999999876
Q ss_pred CC
Q 002974 353 DN 354 (861)
Q Consensus 353 ~~ 354 (861)
..
T Consensus 92 ~~ 93 (96)
T 1fjc_A 92 GG 93 (96)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 109
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=4.6e-14 Score=129.56 Aligned_cols=82 Identities=20% Similarity=0.227 Sum_probs=74.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 4566899999999999999999999999999999885 466799999999999999999999999999999999999
Q ss_pred cCCCCC
Q 002974 349 SIPKDN 354 (861)
Q Consensus 349 a~~k~~ 354 (861)
+.....
T Consensus 91 a~~~~~ 96 (114)
T 2do0_A 91 DERALP 96 (114)
T ss_dssp CSCCCC
T ss_pred cccCCC
Confidence 975433
No 110
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.53 E-value=2.3e-14 Score=124.52 Aligned_cols=76 Identities=26% Similarity=0.449 Sum_probs=70.4
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~A 434 (861)
...++|||+|||..+++++|+++|++||.|..|++ +++.+|||||+|.+.++|++|++.|||..+.|++|+|+++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45689999999999999999999999999999986 3446899999999999999999999999999999999998
Q ss_pred c
Q 002974 435 R 435 (861)
Q Consensus 435 k 435 (861)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 111
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.53 E-value=2.1e-14 Score=134.37 Aligned_cols=85 Identities=19% Similarity=0.472 Sum_probs=77.4
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceee
Q 002974 271 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (861)
Q Consensus 271 ~~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~ 345 (861)
+....+.++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|+.|.
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 345567899999999999999999999999999999986 677899999999999999999999999999999999
Q ss_pred eeecCCCCCC
Q 002974 346 IHYSIPKDNP 355 (861)
Q Consensus 346 V~~a~~k~~~ 355 (861)
|.|+.++...
T Consensus 96 v~~a~~~~~~ 105 (126)
T 3ex7_B 96 VDWCFVRGPP 105 (126)
T ss_dssp EEESEESSSC
T ss_pred EEEecCCCCC
Confidence 9999876543
No 112
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=2.3e-14 Score=136.56 Aligned_cols=82 Identities=27% Similarity=0.392 Sum_probs=74.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHH----HHhhcCCCEEEEEe--CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELK----ALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~----elFsqfG~I~svki--tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V 346 (861)
...+.++|||+|||+.+++++|+ ++|++||+|..|.+ ++++||||||+|.+.++|++|++.|||..|.|++|+|
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 34568999999999999999876 69999999999986 5689999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 002974 347 HYSIPKDN 354 (861)
Q Consensus 347 ~~a~~k~~ 354 (861)
.|+..+..
T Consensus 105 ~~a~~~~~ 112 (127)
T 2a3j_A 105 TFSETPQS 112 (127)
T ss_dssp EECCCCCH
T ss_pred EEccCcch
Confidence 99987643
No 113
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.53 E-value=3.6e-14 Score=128.36 Aligned_cols=82 Identities=20% Similarity=0.417 Sum_probs=74.7
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeee
Q 002974 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V 346 (861)
....+.++|||+|||.++++++|+++|++|| |..|++ +++++|||||+|.+.++|++|+ .|++..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 4556789999999999999999999999997 999985 4778999999999999999999 89999999999999
Q ss_pred eecCCCCCC
Q 002974 347 HYSIPKDNP 355 (861)
Q Consensus 347 ~~a~~k~~~ 355 (861)
.++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dng_A 88 DIAEGRKQD 96 (103)
T ss_dssp EECCCCCCC
T ss_pred EEecCCCCC
Confidence 999876554
No 114
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.3e-14 Score=130.65 Aligned_cols=77 Identities=25% Similarity=0.376 Sum_probs=72.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCC
Q 002974 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (861)
Q Consensus 275 ~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k 352 (861)
...++|||+|||.++++++|+++|++||.|..|++ .+++|||||+|.+.++|++|++.|+|..+.|+.|+|.|+.++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~-~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKH-YPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEE-ecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 45789999999999999999999999999999998 478999999999999999999999999999999999999764
No 115
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=9.3e-15 Score=135.27 Aligned_cols=81 Identities=17% Similarity=0.210 Sum_probs=73.2
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCC--CeeCCcEEEEEeccCC
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNR--SDVAGKQIKLEASRPG 437 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG--~~I~Gr~IkVe~Akpk 437 (861)
...++|||+|||+++++++|+++|++||+|++|++.. .||||||+|.+.++|++|++.|++ ..|.|++|+|.+++++
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~-~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 4568999999999999999999999999999999764 489999999999999999998864 7899999999999987
Q ss_pred chhh
Q 002974 438 GARR 441 (861)
Q Consensus 438 ~~rr 441 (861)
..+.
T Consensus 93 ~~~~ 96 (105)
T 1sjq_A 93 ELKT 96 (105)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 6443
No 116
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.53 E-value=5.8e-15 Score=130.76 Aligned_cols=77 Identities=18% Similarity=0.283 Sum_probs=66.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCC--CEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecC
Q 002974 278 RTLFVRNINSNVEDSELKALFEQFG--DIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (861)
Q Consensus 278 rtLfVgNLP~~vTEedL~elFsqfG--~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~ 350 (861)
.+|||+|||.++++++|+++|++|| .|..+++ +++++|||||+|.+.++|++|++.|+|..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 8888874 67899999999999999999999999999999999999998
Q ss_pred CCCC
Q 002974 351 PKDN 354 (861)
Q Consensus 351 ~k~~ 354 (861)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7644
No 117
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.1e-14 Score=126.20 Aligned_cols=78 Identities=21% Similarity=0.406 Sum_probs=72.1
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit-----gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
....++|||+|||..+++++|+++|++||.|..|++. ++.+|||||+|.+.++|++|++.||+..|.|++|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3456899999999999999999999999999998863 56689999999999999999999999999999999999
Q ss_pred ccC
Q 002974 434 SRP 436 (861)
Q Consensus 434 Akp 436 (861)
+++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 976
No 118
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.53 E-value=2.3e-14 Score=132.57 Aligned_cols=79 Identities=18% Similarity=0.341 Sum_probs=72.9
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeee
Q 002974 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V 346 (861)
....+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|++|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 45567899999999999999999999999999999986 4678999999999999999999999999999999999
Q ss_pred eecC
Q 002974 347 HYSI 350 (861)
Q Consensus 347 ~~a~ 350 (861)
+|++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9874
No 119
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.8e-14 Score=126.71 Aligned_cols=80 Identities=26% Similarity=0.345 Sum_probs=73.5
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Ak 435 (861)
..++|||+|||..+++++|+++|++||.|..|++ +++.+|||||+|.+.++|++|++.||+..|.|++|+|++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 4579999999999999999999999999999986 35568999999999999999999999999999999999999
Q ss_pred CCchh
Q 002974 436 PGGAR 440 (861)
Q Consensus 436 pk~~r 440 (861)
++..+
T Consensus 84 ~~~~~ 88 (95)
T 2dnz_A 84 ERLDG 88 (95)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 87643
No 120
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.53 E-value=2.4e-14 Score=133.38 Aligned_cols=82 Identities=24% Similarity=0.444 Sum_probs=75.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeec
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a 349 (861)
..+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|+.|+|.++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 456899999999999999999999999999999986 5678899999999999999999999999999999999999
Q ss_pred CCCCCC
Q 002974 350 IPKDNP 355 (861)
Q Consensus 350 ~~k~~~ 355 (861)
.++...
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 876543
No 121
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.2e-14 Score=127.63 Aligned_cols=81 Identities=20% Similarity=0.418 Sum_probs=74.0
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit-----gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
....++|||+|||..+++++|+++|++||+|..|++. ++.+|||||+|.+.++|++|++ |++..|.|++|+|++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3456899999999999999999999999999999873 4578999999999999999999 999999999999999
Q ss_pred ccCCchh
Q 002974 434 SRPGGAR 440 (861)
Q Consensus 434 Akpk~~r 440 (861)
++++..+
T Consensus 86 a~~~~~~ 92 (99)
T 2dgs_A 86 AEPRDSK 92 (99)
T ss_dssp CCCCCCC
T ss_pred CCCCccc
Confidence 9987644
No 122
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=4.2e-14 Score=129.04 Aligned_cols=82 Identities=20% Similarity=0.355 Sum_probs=75.2
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhC------CCeeCCc
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLN------RSDVAGK 427 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit-----gksKGfAFVeF~d~eaA~kAL~~LN------G~~I~Gr 427 (861)
....++|||+|||..+++++|+++|++||+|..|++. +..+|||||+|.+.++|++|++.|| +..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3457899999999999999999999999999999874 5678999999999999999999999 9999999
Q ss_pred EEEEEeccCCchh
Q 002974 428 QIKLEASRPGGAR 440 (861)
Q Consensus 428 ~IkVe~Akpk~~r 440 (861)
+|+|.++.++..+
T Consensus 92 ~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 92 QLKVDLAVTRDEA 104 (111)
T ss_dssp EEEEECCCCCCCC
T ss_pred EEEEEECCCCccC
Confidence 9999999987644
No 123
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.53 E-value=2e-14 Score=125.50 Aligned_cols=78 Identities=13% Similarity=0.325 Sum_probs=71.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeC------CCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeec
Q 002974 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTA------CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (861)
Q Consensus 276 ~srtLfVgNLP~~vTEedL~elFsqfG~I~svkit------gksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a 349 (861)
..++|||+|||.++++++|+++|++||.|..|++. ++++|||||+|.+.++|++|++.|+|..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 46899999999999999999999999999999851 228999999999999999999999999999999999999
Q ss_pred CCCC
Q 002974 350 IPKD 353 (861)
Q Consensus 350 ~~k~ 353 (861)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 124
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.53 E-value=3.6e-14 Score=130.67 Aligned_cols=83 Identities=22% Similarity=0.372 Sum_probs=75.3
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
....++|||+|||..+++++|+++|++||.|+.|++ ++..+|||||+|.+.++|++|++.||+..|.|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 456789999999999999999999999999999886 345589999999999999999999999999999999999
Q ss_pred ccCCchhh
Q 002974 434 SRPGGARR 441 (861)
Q Consensus 434 Akpk~~rr 441 (861)
++++..+.
T Consensus 92 a~~~~~~~ 99 (115)
T 2dgo_A 92 ATRKPPAP 99 (115)
T ss_dssp SSCCCCCS
T ss_pred ccCCCCCC
Confidence 99876443
No 125
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.53 E-value=1.4e-14 Score=132.71 Aligned_cols=96 Identities=17% Similarity=0.279 Sum_probs=82.5
Q ss_pred cCcceeeeeecCCCCCCCCcccCCcceEEecccCC-CcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHH
Q 002974 339 LRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSS-VSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALR 417 (861)
Q Consensus 339 L~Gr~L~V~~a~~k~~~~~k~~~~~tLfVgNLp~s-vTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~ 417 (861)
..|..|+|..+...... ......++|||+|||.. +++++|+++|++||+|+.|++ .++||||+|.+.++|++|++
T Consensus 5 ~~g~~~~~~~s~~~~~~-~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~ 80 (110)
T 1wf1_A 5 SSGMSLKLQASNVTNKN-DPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVL 80 (110)
T ss_dssp CCSCCCCCCCCCSCCSC-CCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHH
T ss_pred CCCcccccccCCCCCCC-CCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHH
Confidence 34677777776654332 22344689999999999 999999999999999999998 78999999999999999999
Q ss_pred HhCCCeeCCcEEEEEeccCCc
Q 002974 418 TLNRSDVAGKQIKLEASRPGG 438 (861)
Q Consensus 418 ~LNG~~I~Gr~IkVe~Akpk~ 438 (861)
.||+..|.|++|+|++++++.
T Consensus 81 ~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 81 GENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp HHTTCEETTEECCEEESCCCC
T ss_pred HcCCCEECCeEEEEEECCCCC
Confidence 999999999999999998654
No 126
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.53 E-value=1.7e-14 Score=139.87 Aligned_cols=115 Identities=17% Similarity=0.211 Sum_probs=98.4
Q ss_pred CcceEEecccCCCcHHHHHHHhccc----C-------cEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Q 002974 362 QGTLVVFNLDSSVSTEELHQIFGIY----G-------EIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIK 430 (861)
Q Consensus 362 ~~tLfVgNLp~svTeedLrelFskf----G-------eI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~Ik 430 (861)
.++|||+|||.++++++|+++|++| | .|..+++ +.++|||||+|.+.++|++|+ .||+..+.|++|+
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~-~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~ 81 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-ETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe-cCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceee
Confidence 5799999999999999999999999 7 7888875 467999999999999999999 8999999999999
Q ss_pred EEeccCCchhhhchhhhhhhccccCC-CCCCCCCCcccc----CCcccEEEEe----CCCCCccee
Q 002974 431 LEASRPGGARRFMVQSEQEQDDLNLC-QIPFDDLSSGQM----VSSGVITSTC----MDNGSIQVL 487 (861)
Q Consensus 431 Ve~Akpk~~rrl~qq~eq~q~E~~vg-kNLp~s~tee~L----s~fG~I~Sv~----~enG~srGF 487 (861)
|.++.+..... ....+. +|||.++++++| .+||.|..++ .++|.++||
T Consensus 82 v~~~~~~~~~~---------~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~ 138 (172)
T 2g4b_A 82 IRRPHDYQPLP---------GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGY 138 (172)
T ss_dssp EECCSSCCCCT---------TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEE
T ss_pred ecCCcccCCCC---------CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceE
Confidence 99987653211 123334 899999999999 8999999887 358888987
No 127
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.53 E-value=3.5e-14 Score=128.54 Aligned_cols=83 Identities=18% Similarity=0.261 Sum_probs=74.6
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCC---cEEEE
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAG---KQIKL 431 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~G---r~IkV 431 (861)
....++|||+|||..+++++|+++|++||.|+.|++ .++++|||||+|.+.++|++|++.||+..+.| ++|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 345789999999999999999999999999999886 34458999999999999999999999999998 99999
Q ss_pred EeccCCchhh
Q 002974 432 EASRPGGARR 441 (861)
Q Consensus 432 e~Akpk~~rr 441 (861)
.+++++..++
T Consensus 92 ~~a~~~~~~~ 101 (105)
T 2dnh_A 92 KFADTDKESG 101 (105)
T ss_dssp EESCSSCCCS
T ss_pred EECccCcccC
Confidence 9999876543
No 128
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2e-14 Score=129.52 Aligned_cols=82 Identities=24% Similarity=0.426 Sum_probs=74.9
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit-----gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
....++|||+|||..+++++|+++|++||+|+.|++. ++.+|||||+|.+.++|++|++.||+..|.|++|+|++
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 3457899999999999999999999999999999873 45789999999999999999999999999999999999
Q ss_pred ccCCchh
Q 002974 434 SRPGGAR 440 (861)
Q Consensus 434 Akpk~~r 440 (861)
++++..+
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9987644
No 129
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.53 E-value=3.9e-14 Score=128.32 Aligned_cols=80 Identities=26% Similarity=0.523 Sum_probs=74.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCC
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k 352 (861)
...+.++|||+|||+++++++|+++|++||.|..|++. ++||||+|.+.++|++|++.|++..|.|+.|+|.|+.++
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 34568999999999999999999999999999999983 789999999999999999999999999999999999877
Q ss_pred CCC
Q 002974 353 DNP 355 (861)
Q Consensus 353 ~~~ 355 (861)
...
T Consensus 84 ~~~ 86 (103)
T 2dgu_A 84 DQK 86 (103)
T ss_dssp CCC
T ss_pred ccc
Confidence 554
No 130
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.53 E-value=6.4e-15 Score=133.43 Aligned_cols=78 Identities=18% Similarity=0.273 Sum_probs=72.9
Q ss_pred CCCcEEEEcCCCC------CCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCc-c
Q 002974 275 HPSRTLFVRNINS------NVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRR-R 342 (861)
Q Consensus 275 ~~srtLfVgNLP~------~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~G-r 342 (861)
..+++|||+|||. ++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4578999999999 9999999999999999999985 48899999999999999999999999999999 9
Q ss_pred eeeeeecCCC
Q 002974 343 KLDIHYSIPK 352 (861)
Q Consensus 343 ~L~V~~a~~k 352 (861)
.|+|.++.++
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999998753
No 131
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.53 E-value=3.6e-14 Score=126.75 Aligned_cols=79 Identities=16% Similarity=0.267 Sum_probs=73.3
Q ss_pred CcceEEecccCCCcHHHHHHHhcccCcEEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 002974 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (861)
Q Consensus 362 ~~tLfVgNLp~svTeedLrelFskfGeI~sVrit-----gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akp 436 (861)
.++|||+|||..+++++|+++|++||.|.+|++. ++++|||||+|.+.++|++|++.|||..+.|+.|+|+++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 4789999999999999999999999999999873 55689999999999999999999999999999999999998
Q ss_pred Cchh
Q 002974 437 GGAR 440 (861)
Q Consensus 437 k~~r 440 (861)
+...
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 8643
No 132
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4.8e-14 Score=127.34 Aligned_cols=83 Identities=20% Similarity=0.348 Sum_probs=75.0
Q ss_pred cccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC---CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 002974 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT---QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (861)
Q Consensus 358 k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit---gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~A 434 (861)
.....++|||+|||..+++++|+++|++||.|+.|++. ...++||||+|.+.++|++|++.||+..|.|++|+|+++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 34567899999999999999999999999999999874 235899999999999999999999999999999999999
Q ss_pred cCCchh
Q 002974 435 RPGGAR 440 (861)
Q Consensus 435 kpk~~r 440 (861)
+++..+
T Consensus 91 ~~~~~~ 96 (103)
T 2cq3_A 91 TARVMT 96 (103)
T ss_dssp CSSCCC
T ss_pred ccCCCC
Confidence 987643
No 133
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.9e-14 Score=130.54 Aligned_cols=80 Identities=24% Similarity=0.390 Sum_probs=73.7
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit-----gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
....++|||+|||..+++++|+++|++||+|..|++. +..+|||||+|.+.++|++|++.|||..|.|++|+|++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 3456789999999999999999999999999999863 56689999999999999999999999999999999999
Q ss_pred ccCCc
Q 002974 434 SRPGG 438 (861)
Q Consensus 434 Akpk~ 438 (861)
++++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98765
No 134
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2.4e-14 Score=128.86 Aligned_cols=83 Identities=19% Similarity=0.398 Sum_probs=74.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCC
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~ 351 (861)
...+.++|||+|||.++++++|+++|++||.|..++. +++++|||||+|.+.++|++|++.|++..|.|+.|+|.|+.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 4567899999999999999999999999999955443 678899999999999999999999999999999999999987
Q ss_pred CCCC
Q 002974 352 KDNP 355 (861)
Q Consensus 352 k~~~ 355 (861)
+...
T Consensus 91 ~~~~ 94 (101)
T 2fc9_A 91 RGSP 94 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 135
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.5e-14 Score=128.23 Aligned_cols=81 Identities=22% Similarity=0.291 Sum_probs=73.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCC
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k 352 (861)
.....++|||+|||+++++++|+++|++||.|....++++++|||||+|.+.++|++|++.|+|..|.|+.|+|.++.++
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 34568999999999999999999999999999633345788999999999999999999999999999999999999876
Q ss_pred C
Q 002974 353 D 353 (861)
Q Consensus 353 ~ 353 (861)
.
T Consensus 95 ~ 95 (97)
T 2e5j_A 95 R 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 136
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.3e-14 Score=131.52 Aligned_cols=83 Identities=23% Similarity=0.367 Sum_probs=75.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEE--------EEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCcccc
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIR--------TIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPL 339 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~--------svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L 339 (861)
...+.++|||+|||.++++++|+++|++||.|. .|++ +++++|||||+|.+.++|++|++.|++..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 456789999999999999999999999999998 4764 467899999999999999999999999999
Q ss_pred CcceeeeeecCCCCCC
Q 002974 340 RRRKLDIHYSIPKDNP 355 (861)
Q Consensus 340 ~Gr~L~V~~a~~k~~~ 355 (861)
.|+.|+|.++.++...
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999887554
No 137
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.53 E-value=3.5e-14 Score=135.03 Aligned_cols=83 Identities=20% Similarity=0.419 Sum_probs=76.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~ 347 (861)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..|.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4567899999999999999999999999999999985 46789999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 002974 348 YSIPKDNP 355 (861)
Q Consensus 348 ~a~~k~~~ 355 (861)
++.++..+
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99887654
No 138
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.53 E-value=2.5e-14 Score=128.48 Aligned_cols=79 Identities=23% Similarity=0.379 Sum_probs=72.6
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEE--------EEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccc
Q 002974 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRT--------IYT-----ACKHRGFVMISYYDIRAARNAMKALQNKP 338 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~s--------vki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~ 338 (861)
....+.++|||+|||.++++++|+++|++||.|.. +++ +++++|||||+|.+.++|++|++.|+|..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34567899999999999999999999999999988 764 47789999999999999999999999999
Q ss_pred cCcceeeeeecC
Q 002974 339 LRRRKLDIHYSI 350 (861)
Q Consensus 339 L~Gr~L~V~~a~ 350 (861)
+.|+.|+|.+++
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999874
No 139
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=5.2e-14 Score=124.71 Aligned_cols=77 Identities=26% Similarity=0.422 Sum_probs=71.2
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit-----gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
....++|||+|||..+++++|+++|++||+|..|++. ++.+|||||+|.+.++|++|++.||+..|.|++|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 4457899999999999999999999999999999873 45689999999999999999999999999999999999
Q ss_pred cc
Q 002974 434 SR 435 (861)
Q Consensus 434 Ak 435 (861)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 140
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.7e-14 Score=126.09 Aligned_cols=77 Identities=29% Similarity=0.416 Sum_probs=72.6
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCch
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~~ 439 (861)
...++|||+|||..+++++|+++|++||+|+.|++. ++||||+|.+.++|++|++.||+..+.|++|+|++++++..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 456899999999999999999999999999999985 79999999999999999999999999999999999998764
No 141
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.5e-14 Score=126.14 Aligned_cols=76 Identities=20% Similarity=0.340 Sum_probs=71.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeec
Q 002974 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (861)
Q Consensus 275 ~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a 349 (861)
.+.++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..+.|+.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46899999999999999999999999999999985 4678999999999999999999999999999999999876
Q ss_pred C
Q 002974 350 I 350 (861)
Q Consensus 350 ~ 350 (861)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 142
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=3.3e-14 Score=127.27 Aligned_cols=79 Identities=19% Similarity=0.352 Sum_probs=73.1
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeC--CcEEEEEeccCC
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVA--GKQIKLEASRPG 437 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~--Gr~IkVe~Akpk 437 (861)
...++|||+|||..+++++|+++|++||+|+.|++.. .++||||+|.+.++|++|++.||+..|. |++|+|++++++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK-GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS-SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC-CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCC
Confidence 3457999999999999999999999999999999864 4899999999999999999999999999 999999999987
Q ss_pred ch
Q 002974 438 GA 439 (861)
Q Consensus 438 ~~ 439 (861)
..
T Consensus 94 ~~ 95 (97)
T 1why_A 94 PS 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 143
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.52 E-value=2.2e-14 Score=131.60 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=72.0
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCe--eCCcEEEEEeccCC
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSD--VAGKQIKLEASRPG 437 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~--I~Gr~IkVe~Akpk 437 (861)
...++|||+|||.++|+++|+++|++||.|++|++. +.||||||+|.+.++|.+|++.|++.. |.|++|+|++++++
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~-~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM-PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 456799999999999999999999999999999975 468999999999999999999999885 78999999999986
Q ss_pred c
Q 002974 438 G 438 (861)
Q Consensus 438 ~ 438 (861)
.
T Consensus 98 ~ 98 (100)
T 3r27_A 98 K 98 (100)
T ss_dssp C
T ss_pred c
Confidence 4
No 144
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.52 E-value=2.8e-14 Score=130.40 Aligned_cols=82 Identities=21% Similarity=0.347 Sum_probs=74.7
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit-----gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
....++|||+|||..+++++|+++|++||.|..|++. +..+|||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3456799999999999999999999999999999873 45689999999999999999999999999999999999
Q ss_pred ccCCchh
Q 002974 434 SRPGGAR 440 (861)
Q Consensus 434 Akpk~~r 440 (861)
++++..+
T Consensus 103 a~~~~~~ 109 (110)
T 1oo0_B 103 CFVKGPK 109 (110)
T ss_dssp SEESSCC
T ss_pred cccCCCC
Confidence 9987644
No 145
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.7e-14 Score=132.64 Aligned_cols=81 Identities=22% Similarity=0.419 Sum_probs=74.6
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki---tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
....+.++|||+|||.++++++|+++|++||+|..|++ .+.++|||||+|.+.++|++|++.|+|..+.|+.|+|.+
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35567899999999999999999999999999999986 345799999999999999999999999999999999999
Q ss_pred cCCC
Q 002974 349 SIPK 352 (861)
Q Consensus 349 a~~k 352 (861)
+.++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9765
No 146
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.52 E-value=1.6e-14 Score=128.82 Aligned_cols=82 Identities=28% Similarity=0.619 Sum_probs=74.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHH----HHhhcCCCEEEEEeC--CCcccEEEEEeCCHHHHHHHHHHcCccccCcceeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELK----ALFEQFGDIRTIYTA--CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~----elFsqfG~I~svkit--gksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V 346 (861)
...++++|||+|||.++++++|+ ++|++||.|..|++. ++++|||||+|.+.++|++|++.|+|..+.|+.|+|
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 45678999999999999999999 999999999999873 467899999999999999999999999999999999
Q ss_pred eecCCCCC
Q 002974 347 HYSIPKDN 354 (861)
Q Consensus 347 ~~a~~k~~ 354 (861)
.|+.++..
T Consensus 84 ~~a~~~~~ 91 (97)
T 1nu4_A 84 QYAKTDSD 91 (97)
T ss_dssp EECSSCCT
T ss_pred EEccCCCc
Confidence 99987643
No 147
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.5e-14 Score=133.68 Aligned_cols=78 Identities=13% Similarity=0.272 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCC
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k 352 (861)
.+..++|||+|||+++++++|+++|++||.|..|++ .+.+|||||+|.+.++|++|++.|||..+.|+.|+|.|+...
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLL-PEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 445789999999999999999999999999999998 468999999999999999999999999999999999999754
No 148
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=8.4e-15 Score=132.19 Aligned_cols=82 Identities=24% Similarity=0.441 Sum_probs=74.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~ 347 (861)
.+.+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..+.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 4 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp SHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred cCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 3456799999999999999999999999999999885 56779999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 002974 348 YSIPKDN 354 (861)
Q Consensus 348 ~a~~k~~ 354 (861)
++.++..
T Consensus 84 ~a~~~~~ 90 (104)
T 1p1t_A 84 NAASEKN 90 (104)
T ss_dssp ETTCTTH
T ss_pred eCCCccc
Confidence 9987643
No 149
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.52 E-value=3.2e-14 Score=129.17 Aligned_cols=79 Identities=24% Similarity=0.421 Sum_probs=73.5
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeee
Q 002974 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~ 347 (861)
....+.++|||+|||+.+++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|+.|+|.
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567999999999999999999999999999999885 56789999999999999999999999999999999999
Q ss_pred ecC
Q 002974 348 YSI 350 (861)
Q Consensus 348 ~a~ 350 (861)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 975
No 150
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=6e-14 Score=128.43 Aligned_cols=81 Identities=14% Similarity=0.206 Sum_probs=73.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCc-----ceeeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRR-----RKLDIH 347 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~G-----r~L~V~ 347 (861)
.....++|||+|||+++++++|+++|++||+|..|++... |||||+|.+.++|++||+.|+++.|.| +.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 4466899999999999999999999999999999997333 999999999999999999999999999 999999
Q ss_pred ecCCCCCC
Q 002974 348 YSIPKDNP 355 (861)
Q Consensus 348 ~a~~k~~~ 355 (861)
++.++...
T Consensus 89 ~a~~~~~~ 96 (108)
T 1x4c_A 89 VDGPRSPS 96 (108)
T ss_dssp ESSCCSCC
T ss_pred eCCCCCCC
Confidence 99886543
No 151
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.52 E-value=3.5e-14 Score=129.51 Aligned_cols=80 Identities=16% Similarity=0.308 Sum_probs=73.6
Q ss_pred CCCCCcEEEEcCCCCCC------cHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEeCCHHHHHHHHHHcCccccCcc-
Q 002974 273 GEHPSRTLFVRNINSNV------EDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRR- 342 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~v------TEedL~elFsqfG~I~svki---tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr- 342 (861)
.....++|||+|||..+ ++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 45568999999999999 78999999999999999986 567899999999999999999999999999999
Q ss_pred eeeeeecCCC
Q 002974 343 KLDIHYSIPK 352 (861)
Q Consensus 343 ~L~V~~a~~k 352 (861)
.|+|.++...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999999754
No 152
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.52 E-value=5.9e-15 Score=143.95 Aligned_cols=120 Identities=18% Similarity=0.208 Sum_probs=99.8
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEE----EeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREI----RDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sV----ritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~A 434 (861)
....++|||+|||.++++++|+++|.+||.|..+ ..++.++|||||+|.+.++|++|++ |||..+.|++|+|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 4457899999999999999999999999865441 1256789999999999999999995 9999999999999999
Q ss_pred cCCchhhhchhhhhhhccccCC-CCCCCCCCcccc----CCcccEEEEeCCCCCccee
Q 002974 435 RPGGARRFMVQSEQEQDDLNLC-QIPFDDLSSGQM----VSSGVITSTCMDNGSIQVL 487 (861)
Q Consensus 435 kpk~~rrl~qq~eq~q~E~~vg-kNLp~s~tee~L----s~fG~I~Sv~~enG~srGF 487 (861)
.++..+. ......+. +||+.++++++| ..||.|..+ ..+|.++||
T Consensus 89 ~~~~~~~-------~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~ 138 (175)
T 1fje_B 89 KGRDSKK-------VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGI 138 (175)
T ss_dssp CCSSCST-------TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSE
T ss_pred CCccccc-------cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceE
Confidence 8765321 11223344 999999999999 899999888 888889987
No 153
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.52 E-value=2.7e-14 Score=124.62 Aligned_cols=78 Identities=23% Similarity=0.400 Sum_probs=71.6
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCC-----C-CccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----H-KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sVritg-----k-sKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~A 434 (861)
..++|||+|||.++++++|+++|++||.|..|++.. . .+|||||+|.+.++|++|++.|||..+.|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 357899999999999999999999999999998632 2 6899999999999999999999999999999999999
Q ss_pred cCCc
Q 002974 435 RPGG 438 (861)
Q Consensus 435 kpk~ 438 (861)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8765
No 154
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.8e-14 Score=134.74 Aligned_cols=80 Identities=15% Similarity=0.186 Sum_probs=72.9
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCc--cccCcceeeeeecC
Q 002974 274 EHPSRTLFVRNINSN-VEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQN--KPLRRRKLDIHYSI 350 (861)
Q Consensus 274 ~~~srtLfVgNLP~~-vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG--~~L~Gr~L~V~~a~ 350 (861)
..++++|||+|||++ +++++|+++|++||+|..|++ .+.||||||+|.+.++|++|++.|++ ..|.||+|+|.|+.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i-~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYIL-MRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSE 100 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEE-ecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECc
Confidence 567999999999998 999999999999999999998 56799999999999999999998865 45999999999998
Q ss_pred CCCC
Q 002974 351 PKDN 354 (861)
Q Consensus 351 ~k~~ 354 (861)
.+..
T Consensus 101 ~~~~ 104 (112)
T 1x4f_A 101 KYKK 104 (112)
T ss_dssp SCSS
T ss_pred cccc
Confidence 6654
No 155
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=7.4e-14 Score=125.41 Aligned_cols=79 Identities=22% Similarity=0.410 Sum_probs=73.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcC--CCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecC
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQF--GDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqf--G~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~ 350 (861)
...+.++|||+|||+++++++|+++|++| |.|..|++ .+|||||+|.+.++|++|++.|+|..|.|+.|+|.|+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK---IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE---CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE---eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 44578999999999999999999999999 99999987 47899999999999999999999999999999999998
Q ss_pred CCCC
Q 002974 351 PKDN 354 (861)
Q Consensus 351 ~k~~ 354 (861)
++..
T Consensus 88 ~~~~ 91 (99)
T 2cpd_A 88 PVDK 91 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 156
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.8e-14 Score=127.13 Aligned_cols=79 Identities=20% Similarity=0.352 Sum_probs=72.4
Q ss_pred cCCcceEEecccCCCcHHHHH----HHhcccCcEEEEEeCCC--CccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 360 ANQGTLVVFNLDSSVSTEELH----QIFGIYGEIREIRDTQH--KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLr----elFskfGeI~sVritgk--sKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
.+.++|||+|||..+++++|+ ++|++||+|++|++... .++||||+|.+.++|++|++.|||..+.|++|+|++
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345789999999999999999 99999999999998522 289999999999999999999999999999999999
Q ss_pred ccCCc
Q 002974 434 SRPGG 438 (861)
Q Consensus 434 Akpk~ 438 (861)
++++.
T Consensus 87 a~~~~ 91 (96)
T 2dgx_A 87 ATGAS 91 (96)
T ss_dssp CCCSS
T ss_pred cCCCC
Confidence 98875
No 157
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=4.5e-14 Score=124.65 Aligned_cols=80 Identities=18% Similarity=0.372 Sum_probs=73.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCC
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k 352 (861)
...+.++|||+|||.++++++|+++|++||.|..|++. ++||||+|.+.++|++|++.|+|..+.|+.|+|.++.++
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 34578999999999999999999999999999999984 669999999999999999999999999999999999876
Q ss_pred CCC
Q 002974 353 DNP 355 (861)
Q Consensus 353 ~~~ 355 (861)
...
T Consensus 82 ~~~ 84 (90)
T 2dnp_A 82 QKK 84 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 158
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.4e-14 Score=126.67 Aligned_cols=81 Identities=15% Similarity=0.274 Sum_probs=73.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHH----HHhhcCCCEEEEEeC--CCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 275 HPSRTLFVRNINSNVEDSELK----ALFEQFGDIRTIYTA--CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 275 ~~srtLfVgNLP~~vTEedL~----elFsqfG~I~svkit--gksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
.+.++|||+|||.++++++|+ ++|++||+|..|++. ...+|||||+|.+.++|++|++.|+|..+.|++|+|.+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 457899999999999999999 999999999999973 22389999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 002974 349 SIPKDNP 355 (861)
Q Consensus 349 a~~k~~~ 355 (861)
+.++..+
T Consensus 87 a~~~~~~ 93 (96)
T 2dgx_A 87 ATGASGP 93 (96)
T ss_dssp CCCSSCC
T ss_pred cCCCCCC
Confidence 9876543
No 159
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.52 E-value=2e-14 Score=133.94 Aligned_cols=78 Identities=18% Similarity=0.136 Sum_probs=71.5
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccC-cEEEEEeC-CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYG-EIREIRDT-QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfG-eI~sVrit-gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~ 438 (861)
...+|||+|||+++++++|+++|++|| +|..|++. .+++|||||+|.+.++|++|++.|||..|.|++|+|++++...
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPP 106 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC--
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 357999999999999999999999999 99999884 5689999999999999999999999999999999999998654
No 160
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3e-14 Score=128.73 Aligned_cols=81 Identities=23% Similarity=0.413 Sum_probs=74.3
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit-----gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
....++|||+|||..+++++|+++|++||.|..|++. ++.+|||||+|.+.++|++|++.||+..|.|++|+|++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3456899999999999999999999999999999873 56789999999999999999999999999999999999
Q ss_pred ccCCch
Q 002974 434 SRPGGA 439 (861)
Q Consensus 434 Akpk~~ 439 (861)
++++..
T Consensus 90 a~~~~~ 95 (103)
T 2dnm_A 90 ARYGRR 95 (103)
T ss_dssp CSSCCS
T ss_pred CCcCCC
Confidence 997653
No 161
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.2e-14 Score=129.18 Aligned_cols=82 Identities=27% Similarity=0.487 Sum_probs=74.4
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit-----gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
....++|||+|||..+++++|+++|++||+|+.|++. +..+|||||+|.+.++|++|++.||+..|.|++|+|++
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3456899999999999999999999999999999873 34689999999999999999999999999999999999
Q ss_pred ccCCchh
Q 002974 434 SRPGGAR 440 (861)
Q Consensus 434 Akpk~~r 440 (861)
++++...
T Consensus 89 a~~~~~~ 95 (102)
T 1x5s_A 89 AGKSSDN 95 (102)
T ss_dssp EECCCCC
T ss_pred CCCCCCC
Confidence 9987643
No 162
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.51 E-value=1.1e-14 Score=140.45 Aligned_cols=116 Identities=16% Similarity=0.277 Sum_probs=98.0
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Ak 435 (861)
..++|||+|||.++|+++|+++|++||+|.+|++ ++.++|||||+|.+.++|++|++ ++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 3578999999999999999999999999999986 35568999999999999999999 4679999999999987
Q ss_pred CCchhhhchhhhhhhccccCC-CCCCCCCCcccc----CCcccEEEEe----CCCCCccee
Q 002974 436 PGGARRFMVQSEQEQDDLNLC-QIPFDDLSSGQM----VSSGVITSTC----MDNGSIQVL 487 (861)
Q Consensus 436 pk~~rrl~qq~eq~q~E~~vg-kNLp~s~tee~L----s~fG~I~Sv~----~enG~srGF 487 (861)
++... .....++ +||+.++++++| ..||.|.+++ .++|.++||
T Consensus 80 ~~~~~---------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~ 131 (167)
T 2cjk_A 80 PRDEQ---------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGF 131 (167)
T ss_dssp CHHHH---------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEE
T ss_pred chhhc---------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceE
Confidence 65321 1122344 999999999999 8999999988 357889887
No 163
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=2.5e-14 Score=127.92 Aligned_cols=79 Identities=23% Similarity=0.354 Sum_probs=72.5
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC------C--CCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT------Q--HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit------g--ksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe 432 (861)
..++|||+|||.++++++|+++|++||+|+.|++. + ..+|||||+|.+.++|++|++.||+..|.|++|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 45799999999999999999999999999998763 1 567999999999999999999999999999999999
Q ss_pred eccCCch
Q 002974 433 ASRPGGA 439 (861)
Q Consensus 433 ~Akpk~~ 439 (861)
+++++..
T Consensus 84 ~a~~~~~ 90 (98)
T 2cpf_A 84 ISERATK 90 (98)
T ss_dssp CSSCSSC
T ss_pred EccCCCC
Confidence 9998763
No 164
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5.4e-14 Score=128.81 Aligned_cols=80 Identities=19% Similarity=0.197 Sum_probs=72.2
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHh--CCCeeCCcEEEEEeccCC
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTL--NRSDVAGKQIKLEASRPG 437 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~L--NG~~I~Gr~IkVe~Akpk 437 (861)
...++|||+|||+.+++++|+++|++||.|.+|++.. .||||||+|.+.++|++|++.| ++..+.|++|+|.+++++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK-GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 4567999999999999999999999999999998754 4899999999999999999987 467899999999999987
Q ss_pred chh
Q 002974 438 GAR 440 (861)
Q Consensus 438 ~~r 440 (861)
..+
T Consensus 92 ~~~ 94 (101)
T 2cq1_A 92 ELK 94 (101)
T ss_dssp SCC
T ss_pred cCc
Confidence 643
No 165
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5.4e-14 Score=129.28 Aligned_cols=83 Identities=20% Similarity=0.384 Sum_probs=75.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCE----EEEE-eCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDI----RTIY-TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I----~svk-itgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~ 347 (861)
...+.++|||+|||.++++++|+++|++||.| ..++ .+++++|||||+|.+.++|++|++.|+|..|.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 44578999999999999999999999999998 4554 478999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 002974 348 YSIPKDNP 355 (861)
Q Consensus 348 ~a~~k~~~ 355 (861)
|+.++...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpx_A 101 FGKNKKQR 108 (115)
T ss_dssp ECCCCSCC
T ss_pred EccCCCCC
Confidence 99887654
No 166
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.51 E-value=3.1e-14 Score=125.70 Aligned_cols=80 Identities=19% Similarity=0.249 Sum_probs=73.6
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe---CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD---TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri---tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akp 436 (861)
...++|||+|||..+++++|+++|++||+|..|++ .++.+|||||+|.+.++|++|++.||+..+.|++|+|+++++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 45689999999999999999999999999999876 455789999999999999999999999999999999999998
Q ss_pred Cch
Q 002974 437 GGA 439 (861)
Q Consensus 437 k~~ 439 (861)
+..
T Consensus 86 ~~~ 88 (92)
T 2dgv_A 86 ASG 88 (92)
T ss_dssp CSS
T ss_pred CCC
Confidence 753
No 167
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=4.9e-14 Score=124.40 Aligned_cols=78 Identities=26% Similarity=0.386 Sum_probs=72.6
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~ 438 (861)
....++|||+|||..+++++|+++|++||.|..|++. ++||||+|.+.++|++|++.||+..+.|++|+|++++++.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 4457899999999999999999999999999999985 5699999999999999999999999999999999999875
Q ss_pred h
Q 002974 439 A 439 (861)
Q Consensus 439 ~ 439 (861)
.
T Consensus 83 ~ 83 (90)
T 2dnp_A 83 K 83 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 168
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5.5e-14 Score=128.07 Aligned_cols=83 Identities=19% Similarity=0.308 Sum_probs=75.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCC-EEEEEeC------CCcccEEEEEeCCHHHHHHHHHHcC--ccccCccee
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGD-IRTIYTA------CKHRGFVMISYYDIRAARNAMKALQ--NKPLRRRKL 344 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~-I~svkit------gksrGyAFVeF~d~e~A~kALkaLn--G~~L~Gr~L 344 (861)
..+.++|||+|||.++++++|+++|++||. |..|++. ++++|||||+|.+.++|++|++.|+ +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 346899999999999999999999999998 9999863 4789999999999999999999996 589999999
Q ss_pred eeeecCCCCCCC
Q 002974 345 DIHYSIPKDNPS 356 (861)
Q Consensus 345 ~V~~a~~k~~~~ 356 (861)
+|.|+.++....
T Consensus 85 ~V~~a~~~~~~~ 96 (109)
T 2dis_A 85 AVDWAEPEIDVD 96 (109)
T ss_dssp EEEESCSSCSTT
T ss_pred EEEEcCCCCCcC
Confidence 999998876543
No 169
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.51 E-value=1.2e-14 Score=131.72 Aligned_cols=76 Identities=18% Similarity=0.361 Sum_probs=68.2
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCc--EEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCC----eeCCcEE
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGE--IREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRS----DVAGKQI 429 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGe--I~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~----~I~Gr~I 429 (861)
.-.+|||+|||+.+|+++|+++|++||. |.+|++ ++++||||||+|.+.++|++|++.|||. .|.||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3468999999999999999999999995 556765 4677999999999999999999999997 4899999
Q ss_pred EEEeccC
Q 002974 430 KLEASRP 436 (861)
Q Consensus 430 kVe~Akp 436 (861)
+|+||+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999985
No 170
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.51 E-value=2.3e-14 Score=135.81 Aligned_cols=83 Identities=16% Similarity=0.338 Sum_probs=75.0
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEE--EEe-----CCCcccEEEEEeCCHHHHHHHHHHcCcc----ccC
Q 002974 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRT--IYT-----ACKHRGFVMISYYDIRAARNAMKALQNK----PLR 340 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~s--vki-----tgksrGyAFVeF~d~e~A~kALkaLnG~----~L~ 340 (861)
....+.++|||+|||+++++++|+++|++||.|.. |++ ++++||||||+|.+. +|++|++.|+|. .|.
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34567899999999999999999999999999966 764 688999999999999 999999999999 999
Q ss_pred cceeeeeecCCCCCC
Q 002974 341 RRKLDIHYSIPKDNP 355 (861)
Q Consensus 341 Gr~L~V~~a~~k~~~ 355 (861)
|+.|+|.++.++...
T Consensus 97 gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 97 GKTINVEFAKGSKRD 111 (131)
T ss_dssp GCCCCCEECCCSCCC
T ss_pred CEEEEEEECCCCCCC
Confidence 999999999876543
No 171
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.51 E-value=6.6e-14 Score=128.26 Aligned_cols=78 Identities=23% Similarity=0.477 Sum_probs=72.7
Q ss_pred CCCCCcEEEEcCCCCC-CcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCC
Q 002974 273 GEHPSRTLFVRNINSN-VEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~-vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~ 351 (861)
.....++|||+|||++ +++++|+++|++||.|..|++ ++|||||+|.+.++|++|++.|++..|.|+.|+|.++.+
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 3445799999999999 999999999999999999999 799999999999999999999999999999999999975
Q ss_pred CC
Q 002974 352 KD 353 (861)
Q Consensus 352 k~ 353 (861)
..
T Consensus 100 ~~ 101 (110)
T 1wf1_A 100 PK 101 (110)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 172
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.51 E-value=4.8e-14 Score=123.36 Aligned_cols=76 Identities=21% Similarity=0.414 Sum_probs=70.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~ 347 (861)
.+.+.++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++ +++..+.|+.|+|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 4567899999999999999999999999999999985 47789999999999999999996 68888999999998
Q ss_pred ec
Q 002974 348 YS 349 (861)
Q Consensus 348 ~a 349 (861)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 173
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=5.4e-14 Score=124.65 Aligned_cols=78 Identities=22% Similarity=0.324 Sum_probs=72.6
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~ 438 (861)
....++|||+|||..+++++|+++|++||.|..|++. ++||||+|.+.++|++|++.||+..|.|++|+|++++++.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 4557899999999999999999999999999999985 5699999999999999999999999999999999998875
Q ss_pred h
Q 002974 439 A 439 (861)
Q Consensus 439 ~ 439 (861)
.
T Consensus 84 ~ 84 (92)
T 2dgt_A 84 R 84 (92)
T ss_dssp S
T ss_pred C
Confidence 3
No 174
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.51 E-value=2.4e-14 Score=127.51 Aligned_cols=82 Identities=24% Similarity=0.342 Sum_probs=75.5
Q ss_pred cccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 002974 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (861)
Q Consensus 358 k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk 437 (861)
+....++|||+|||..+++++|+++|++||.|..+...++++|||||+|.+.++|++|++.|+|..|.|++|+|++++++
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 34456899999999999999999999999999888667888999999999999999999999999999999999999887
Q ss_pred ch
Q 002974 438 GA 439 (861)
Q Consensus 438 ~~ 439 (861)
..
T Consensus 92 ~~ 93 (96)
T 1fjc_A 92 GG 93 (96)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 175
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.51 E-value=3e-14 Score=127.64 Aligned_cols=80 Identities=24% Similarity=0.392 Sum_probs=72.3
Q ss_pred CCCCCcEEEEcCCCC-CCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCC
Q 002974 273 GEHPSRTLFVRNINS-NVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (861)
Q Consensus 273 ~~~~srtLfVgNLP~-~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~ 351 (861)
...+.++|||+|||. ++++++|+++|++||.|..|++ .+|||||+|.+.++|++|++.|+|..+.|++|+|.++.+
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE---ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 456799999999998 9999999999999999999998 589999999999999999999999999999999999987
Q ss_pred CCCC
Q 002974 352 KDNP 355 (861)
Q Consensus 352 k~~~ 355 (861)
+..+
T Consensus 83 ~~~~ 86 (96)
T 2kvi_A 83 NARP 86 (96)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 6543
No 176
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.51 E-value=4.1e-14 Score=125.59 Aligned_cols=78 Identities=21% Similarity=0.289 Sum_probs=71.4
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC----CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit----gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~A 434 (861)
....++|||+|||..+++++|+++|++||+|+.|++. ++.+|||||+|.+.++|++|++.||+..|.|++|+|+++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 3456899999999999999999999999999998863 445899999999999999999999999999999999998
Q ss_pred cC
Q 002974 435 RP 436 (861)
Q Consensus 435 kp 436 (861)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 177
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5.5e-14 Score=128.60 Aligned_cols=82 Identities=15% Similarity=0.310 Sum_probs=74.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCC
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k 352 (861)
.....++|||+|||.++++++|+++|++||.|..|++. ..+|||||+|.+.++|++|++.|+|..|.|+.|+|.|+.++
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF-PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 34568999999999999999999999999999999973 33999999999999999999999999999999999999876
Q ss_pred CCC
Q 002974 353 DNP 355 (861)
Q Consensus 353 ~~~ 355 (861)
...
T Consensus 100 ~~~ 102 (109)
T 1x4g_A 100 PDM 102 (109)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 178
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.51 E-value=5.3e-14 Score=133.74 Aligned_cols=82 Identities=24% Similarity=0.395 Sum_probs=74.9
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
....++|||+|||..+++++|+++|++||+|++|++ +++.+|||||+|.+.++|++|++.||+..|.|++|+|++
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 445689999999999999999999999999999886 345689999999999999999999999999999999999
Q ss_pred ccCCchh
Q 002974 434 SRPGGAR 440 (861)
Q Consensus 434 Akpk~~r 440 (861)
++++..+
T Consensus 119 a~~~~~~ 125 (139)
T 1u6f_A 119 AASGHQR 125 (139)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9987644
No 179
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.4e-14 Score=127.36 Aligned_cols=80 Identities=18% Similarity=0.323 Sum_probs=73.0
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEE-EeC-----CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREI-RDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sV-rit-----gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~A 434 (861)
..++|||+|||..+++++|+++|++||.|..| ++. +..+|||||+|.+.++|++|++.||+..|.|++|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45799999999999999999999999999888 763 446899999999999999999999999999999999999
Q ss_pred cCCchh
Q 002974 435 RPGGAR 440 (861)
Q Consensus 435 kpk~~r 440 (861)
+++..+
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 987643
No 180
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.50 E-value=3.1e-14 Score=123.47 Aligned_cols=71 Identities=18% Similarity=0.385 Sum_probs=66.1
Q ss_pred CcEEEEcCCCCCC------cHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEeCCHHHHHHHHHHcCccccCcc-eeee
Q 002974 277 SRTLFVRNINSNV------EDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRR-KLDI 346 (861)
Q Consensus 277 srtLfVgNLP~~v------TEedL~elFsqfG~I~svki---tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr-~L~V 346 (861)
+++|||+|||..+ ++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..+.|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 77999999999999999986 567899999999999999999999999999999 8987
Q ss_pred e
Q 002974 347 H 347 (861)
Q Consensus 347 ~ 347 (861)
.
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 181
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.3e-14 Score=127.09 Aligned_cols=80 Identities=20% Similarity=0.351 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCC-EEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCc-cccCcceeeeeecCC
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGD-IRTIYTACKHRGFVMISYYDIRAARNAMKALQN-KPLRRRKLDIHYSIP 351 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~-I~svkitgksrGyAFVeF~d~e~A~kALkaLnG-~~L~Gr~L~V~~a~~ 351 (861)
..+.++|||+|||.++++++|+++|++||. |..+.+ .++|||||+|.+.++|++|++.|+| ..+.|+.|+|.|+.+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL--LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE--EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE--cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 456899999999999999999999999999 666666 5789999999999999999999999 999999999999988
Q ss_pred CCCC
Q 002974 352 KDNP 355 (861)
Q Consensus 352 k~~~ 355 (861)
+...
T Consensus 83 ~~~~ 86 (93)
T 2cqh_A 83 KKLR 86 (93)
T ss_dssp CCCC
T ss_pred cccc
Confidence 7654
No 182
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.50 E-value=3.8e-14 Score=128.48 Aligned_cols=82 Identities=16% Similarity=0.311 Sum_probs=74.4
Q ss_pred cccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCCee---CCcEE
Q 002974 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDV---AGKQI 429 (861)
Q Consensus 358 k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit-----gksKGfAFVeF~d~eaA~kAL~~LNG~~I---~Gr~I 429 (861)
.....++|||+|||..+++++|+++|++||+|.+|++. ++.+|||||+|.+.++|++|++.||+..+ .|++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 34567899999999999999999999999999999873 45689999999999999999999999988 89999
Q ss_pred EEEeccCCch
Q 002974 430 KLEASRPGGA 439 (861)
Q Consensus 430 kVe~Akpk~~ 439 (861)
+|.+++++..
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999998764
No 183
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.50 E-value=4.3e-14 Score=145.48 Aligned_cols=129 Identities=21% Similarity=0.323 Sum_probs=101.4
Q ss_pred ccCCcceEEecccC-CCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 002974 359 DANQGTLVVFNLDS-SVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (861)
Q Consensus 359 ~~~~~tLfVgNLp~-svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk 437 (861)
....++|||+|||. .+++++|+++|++||.|.+|++....+|||||+|.+.++|++|++.|+|..+.|++|+|.+++++
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 34568999999999 99999999999999999999997777999999999999999999999999999999999999865
Q ss_pred chhh-hch--------hhhh-----------h------hccccCC-CCCCCCCCcccc----CCcc-cEEEEeC-CCCCc
Q 002974 438 GARR-FMV--------QSEQ-----------E------QDDLNLC-QIPFDDLSSGQM----VSSG-VITSTCM-DNGSI 484 (861)
Q Consensus 438 ~~rr-l~q--------q~eq-----------~------q~E~~vg-kNLp~s~tee~L----s~fG-~I~Sv~~-enG~s 484 (861)
.... ... .... . .....++ +||+.++++++| ..|| .|..++. ...+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g 190 (229)
T 2adc_A 111 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK 190 (229)
T ss_dssp CCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTT
T ss_pred cccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCc
Confidence 3111 000 0000 0 0011233 899999999999 8999 9999984 44444
Q ss_pred cee
Q 002974 485 QVL 487 (861)
Q Consensus 485 rGF 487 (861)
.+|
T Consensus 191 ~af 193 (229)
T 2adc_A 191 MAL 193 (229)
T ss_dssp CEE
T ss_pred EEE
Confidence 555
No 184
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=4.9e-14 Score=126.91 Aligned_cols=83 Identities=22% Similarity=0.442 Sum_probs=75.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe--CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecC
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki--tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~ 350 (861)
...+.++|||+|||.++++++|+++|++|+.|..++. +++++|||||+|.+.++|++|++.|++..|.|+.|+|.|+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 4567899999999999999999999999988777763 67889999999999999999999999999999999999998
Q ss_pred CCCCC
Q 002974 351 PKDNP 355 (861)
Q Consensus 351 ~k~~~ 355 (861)
++...
T Consensus 91 ~~~~~ 95 (102)
T 2fc8_A 91 PKGEG 95 (102)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 87654
No 185
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=3.3e-14 Score=130.98 Aligned_cols=82 Identities=18% Similarity=0.272 Sum_probs=74.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHH---HHhhcCCCEEEEEeC--------CCcccEEEEEeCCHHHHHHHHHHcCccccCc
Q 002974 273 GEHPSRTLFVRNINSNVEDSELK---ALFEQFGDIRTIYTA--------CKHRGFVMISYYDIRAARNAMKALQNKPLRR 341 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~---elFsqfG~I~svkit--------gksrGyAFVeF~d~e~A~kALkaLnG~~L~G 341 (861)
.....++|||+|||+++++++|+ ++|++||+|..|++. ++++|||||+|.+.++|++|++.|||..|.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 44568999999999999999999 999999999999851 2456999999999999999999999999999
Q ss_pred ceeeeeecCCCCC
Q 002974 342 RKLDIHYSIPKDN 354 (861)
Q Consensus 342 r~L~V~~a~~k~~ 354 (861)
+.|+|.|+.++..
T Consensus 91 r~l~V~~a~~k~~ 103 (111)
T 2cpi_A 91 RTLKASLGTTKYC 103 (111)
T ss_dssp EEEEEESCCCCSC
T ss_pred EEEEEEecccccc
Confidence 9999999988753
No 186
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.50 E-value=4.5e-14 Score=123.69 Aligned_cols=76 Identities=22% Similarity=0.454 Sum_probs=71.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecC
Q 002974 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (861)
Q Consensus 276 ~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~ 350 (861)
..++|||+|||.++++++|+++|++||.|..+++ +++++|||||+|.+.++|++|+ .|+|..+.|+.|+|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4689999999999999999999999999999985 5778999999999999999999 899999999999999997
Q ss_pred CC
Q 002974 351 PK 352 (861)
Q Consensus 351 ~k 352 (861)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 187
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.50 E-value=2.5e-14 Score=141.75 Aligned_cols=125 Identities=16% Similarity=0.177 Sum_probs=98.9
Q ss_pred CCcceEEecccCCCcHHHHHHHhccc----C-------cEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIY----G-------EIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQI 429 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskf----G-------eI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~I 429 (861)
..++|||+|||.++++++|+++|++| | .|..+++ +.++|||||+|.+.++|++|+ .|||..|.|++|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i 80 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-ETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceE
Confidence 35799999999999999999999999 5 6777775 567999999999999999999 799999999999
Q ss_pred EEEeccCCchhhhc-hhh----------hhhhccccCC-CCCCCCCCcccc----CCcccEEEEe----CCCCCccee
Q 002974 430 KLEASRPGGARRFM-VQS----------EQEQDDLNLC-QIPFDDLSSGQM----VSSGVITSTC----MDNGSIQVL 487 (861)
Q Consensus 430 kVe~Akpk~~rrl~-qq~----------eq~q~E~~vg-kNLp~s~tee~L----s~fG~I~Sv~----~enG~srGF 487 (861)
+|.++.+....... ... ........+. +||+.++++++| .+||.|..++ .++|.++||
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~ 158 (198)
T 2yh0_A 81 KIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGY 158 (198)
T ss_dssp EEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEE
T ss_pred EEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceE
Confidence 99998775322110 000 0001112233 999999999999 8999999887 358888887
No 188
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.2e-13 Score=124.82 Aligned_cols=82 Identities=17% Similarity=0.318 Sum_probs=74.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeee
Q 002974 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V 346 (861)
....+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++ ++..|.|+.|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 35567899999999999999999999999999999985 47889999999999999999998 478899999999
Q ss_pred eecCCCCCC
Q 002974 347 HYSIPKDNP 355 (861)
Q Consensus 347 ~~a~~k~~~ 355 (861)
.++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqg_A 88 KLPNSKQSQ 96 (103)
T ss_dssp ECCCTTCCC
T ss_pred EecCCCCcC
Confidence 999887654
No 189
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.2e-13 Score=123.85 Aligned_cols=80 Identities=18% Similarity=0.313 Sum_probs=73.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCC
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k 352 (861)
...+.++|||+|| ++++++|+++|++||.|..|++ .+++|||||+|.+.++|++|++.|++..|.|+.|+|.|+.++
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe-cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 4557899999996 8999999999999999999998 688999999999999999999999999999999999999876
Q ss_pred CCC
Q 002974 353 DNP 355 (861)
Q Consensus 353 ~~~ 355 (861)
...
T Consensus 88 ~~~ 90 (97)
T 1x5p_A 88 PML 90 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 190
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.50 E-value=7e-14 Score=126.04 Aligned_cols=77 Identities=25% Similarity=0.396 Sum_probs=72.1
Q ss_pred CCCCCcEEEEcCCCC-CCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCC
Q 002974 273 GEHPSRTLFVRNINS-NVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (861)
Q Consensus 273 ~~~~srtLfVgNLP~-~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~ 351 (861)
...++++|||+|||. ++++++|+++|++||.|..|++ .+|||||+|.+.++|++|++.|+|..+.|++|+|.++.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE---CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 456799999999998 9999999999999999999998 489999999999999999999999999999999999976
Q ss_pred C
Q 002974 352 K 352 (861)
Q Consensus 352 k 352 (861)
+
T Consensus 95 ~ 95 (97)
T 2xnq_A 95 N 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 191
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.50 E-value=5.2e-14 Score=129.43 Aligned_cols=81 Identities=28% Similarity=0.370 Sum_probs=74.0
Q ss_pred cccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 002974 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (861)
Q Consensus 358 k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe 432 (861)
.....++|||+|||..+++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|||..|.|++|+|+
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3455789999999999999999999999999999886 34568999999999999999999999999999999999
Q ss_pred eccCCc
Q 002974 433 ASRPGG 438 (861)
Q Consensus 433 ~Akpk~ 438 (861)
+++++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 999874
No 192
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.50 E-value=8.9e-14 Score=131.57 Aligned_cols=77 Identities=29% Similarity=0.495 Sum_probs=71.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~ 347 (861)
...+.++|||+|||.++++++|+++|++||.|..+++ +++++|||||+|.+.++|++|++.|+|..|.|+.|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4567899999999999999999999999999999986 46789999999999999999999999999999999998
Q ss_pred ec
Q 002974 348 YS 349 (861)
Q Consensus 348 ~a 349 (861)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 85
No 193
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=5.6e-14 Score=122.20 Aligned_cols=77 Identities=30% Similarity=0.436 Sum_probs=71.2
Q ss_pred cccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHh-CCCeeCCcEEEEEecc
Q 002974 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTL-NRSDVAGKQIKLEASR 435 (861)
Q Consensus 358 k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~L-NG~~I~Gr~IkVe~Ak 435 (861)
.+...++|||+|||..+++++|+++|++||.|..|++. ..+|||||+|.+.++|++|++.| ++..+.|++|+|+|++
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~-~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVV-QRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEE-CCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 34567899999999999999999999999999999975 36899999999999999999999 9999999999999985
No 194
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=6.1e-14 Score=127.08 Aligned_cols=80 Identities=21% Similarity=0.337 Sum_probs=73.0
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC------CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT------QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit------gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe 432 (861)
....++|||+|||..+++++|+++|++|| |..|++. ++.+|||||+|.+.++|++|| .||+..|.|++|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34568999999999999999999999999 9999873 566899999999999999999 899999999999999
Q ss_pred eccCCchh
Q 002974 433 ASRPGGAR 440 (861)
Q Consensus 433 ~Akpk~~r 440 (861)
+++++..+
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99987643
No 195
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=5.3e-14 Score=129.45 Aligned_cols=79 Identities=19% Similarity=0.192 Sum_probs=71.5
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCC--eeCCcEEEEEeccCC
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRS--DVAGKQIKLEASRPG 437 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~--~I~Gr~IkVe~Akpk 437 (861)
...++|||+|||+.+++++|+++|++||+|.+|.+.. .||||||+|.+.++|++|++.|++. .|.|++|+|++++++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP-FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence 4567999999999999999999999999999998754 5899999999999999999998765 599999999999987
Q ss_pred ch
Q 002974 438 GA 439 (861)
Q Consensus 438 ~~ 439 (861)
..
T Consensus 92 ~~ 93 (104)
T 1wex_A 92 RI 93 (104)
T ss_dssp SC
T ss_pred cc
Confidence 53
No 196
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=3.7e-14 Score=130.41 Aligned_cols=78 Identities=19% Similarity=0.232 Sum_probs=70.9
Q ss_pred cCCcceEEecccC-CCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCC--eeCCcEEEEEeccC
Q 002974 360 ANQGTLVVFNLDS-SVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRS--DVAGKQIKLEASRP 436 (861)
Q Consensus 360 ~~~~tLfVgNLp~-svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~--~I~Gr~IkVe~Akp 436 (861)
...++|||+|||+ .+++++|+++|++||+|.+|++. +.++||||+|.+.++|++|++.|++. .|.|++|+|.+++.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLIL-NKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEEC-SSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 3568999999999 99999999999999999999986 46799999999999999999999864 59999999999986
Q ss_pred Cc
Q 002974 437 GG 438 (861)
Q Consensus 437 k~ 438 (861)
+.
T Consensus 92 ~~ 93 (102)
T 1x4d_A 92 YK 93 (102)
T ss_dssp CT
T ss_pred CC
Confidence 53
No 197
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.50 E-value=3e-14 Score=128.71 Aligned_cols=79 Identities=19% Similarity=0.396 Sum_probs=69.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe------CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT------ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki------tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V 346 (861)
.....++|||+|||.++++++|+++|++|| |..|++ +++++|||||+|.+.++|++|+ .|+|..|.|+.|+|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 445689999999999999999999999999 999985 4667999999999999999999 89999999999999
Q ss_pred eecCCCC
Q 002974 347 HYSIPKD 353 (861)
Q Consensus 347 ~~a~~k~ 353 (861)
.++.++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9998754
No 198
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.50 E-value=7.2e-14 Score=135.73 Aligned_cols=82 Identities=26% Similarity=0.394 Sum_probs=76.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~ 347 (861)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|+|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4457899999999999999999999999999999986 57789999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 002974 348 YSIPKDN 354 (861)
Q Consensus 348 ~a~~k~~ 354 (861)
|+.++..
T Consensus 115 ~a~~~~~ 121 (156)
T 1h2v_Z 115 WDAGFKE 121 (156)
T ss_dssp EESCCCT
T ss_pred ECCCCCC
Confidence 9987544
No 199
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.50 E-value=6.3e-14 Score=126.91 Aligned_cols=79 Identities=27% Similarity=0.493 Sum_probs=73.2
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCch
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~~ 439 (861)
...++|||+|||..+++++|+++|++||.|..|++. ++||||+|.+.++|++|++.||+..|.|++|+|++++++..
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 356899999999999999999999999999999975 67999999999999999999999999999999999998764
Q ss_pred hh
Q 002974 440 RR 441 (861)
Q Consensus 440 rr 441 (861)
+.
T Consensus 86 ~~ 87 (103)
T 2dgu_A 86 KR 87 (103)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 200
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=6.7e-14 Score=123.62 Aligned_cols=79 Identities=11% Similarity=0.240 Sum_probs=72.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
.....++|||+|||.++++++|+++|++| .|..|++ +++++|||||+|.+.++|++|++ |++..|.|+.|.|.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 45568999999999999999999999999 8988875 57789999999999999999999 999999999999999
Q ss_pred cCCCC
Q 002974 349 SIPKD 353 (861)
Q Consensus 349 a~~k~ 353 (861)
+.++.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 98764
No 201
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.50 E-value=1.1e-14 Score=128.97 Aligned_cols=77 Identities=16% Similarity=0.168 Sum_probs=65.8
Q ss_pred cceEEecccCCCcHHHHHHHhcccC--cEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 002974 363 GTLVVFNLDSSVSTEELHQIFGIYG--EIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (861)
Q Consensus 363 ~tLfVgNLp~svTeedLrelFskfG--eI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Ak 435 (861)
.+|||+|||.++++++|+++|++|| .|.+|++ +++++|||||+|.+.++|++|++.|||..+.|++|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 8988875 56778999999999999999999999999999999999998
Q ss_pred CCch
Q 002974 436 PGGA 439 (861)
Q Consensus 436 pk~~ 439 (861)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 8653
No 202
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=5.5e-14 Score=128.60 Aligned_cols=80 Identities=20% Similarity=0.303 Sum_probs=74.1
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCch
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~~ 439 (861)
...++|||+|||..+++++|+++|++||.|..|++... +|||||+|.+.++|++|++.|+|..|.|++|+|.+++++..
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 45689999999999999999999999999999998643 89999999999999999999999999999999999998764
Q ss_pred h
Q 002974 440 R 440 (861)
Q Consensus 440 r 440 (861)
.
T Consensus 102 ~ 102 (109)
T 1x4g_A 102 M 102 (109)
T ss_dssp S
T ss_pred C
Confidence 3
No 203
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.50 E-value=3.8e-14 Score=130.49 Aligned_cols=80 Identities=26% Similarity=0.524 Sum_probs=73.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCC
Q 002974 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~ 351 (861)
....+.++|||+|||.++++++|+++|++||.|..|++. +|||||+|.+.++|++|++.|+|..+.|+.|+|.|+.+
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 356678999999999999999999999999999999984 89999999999999999999999999999999999987
Q ss_pred CCC
Q 002974 352 KDN 354 (861)
Q Consensus 352 k~~ 354 (861)
+..
T Consensus 103 ~~~ 105 (108)
T 2jvo_A 103 PAK 105 (108)
T ss_dssp CC-
T ss_pred CCC
Confidence 644
No 204
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=3.1e-14 Score=127.31 Aligned_cols=80 Identities=19% Similarity=0.244 Sum_probs=71.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY-----TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svk-----itgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~ 347 (861)
.....++|||+|||.++++++|+++|++||.|..++ .+++++|||||+|.+.++|++|++.|+|..|.|+.|+|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 345679999999999999999999999999886443 257789999999999999999999999999999999999
Q ss_pred ecCCC
Q 002974 348 YSIPK 352 (861)
Q Consensus 348 ~a~~k 352 (861)
++...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98753
No 205
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.50 E-value=3.3e-14 Score=132.52 Aligned_cols=79 Identities=11% Similarity=0.100 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCC-CEEEEEe-CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCC
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFG-DIRTIYT-ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG-~I~svki-tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~ 351 (861)
....++|||+|||+++++++|+++|++|| +|..+++ ..+++|||||+|.+.++|++|++.|||..|.|+.|+|.++..
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 34578999999999999999999999999 8999997 467899999999999999999999999999999999999864
Q ss_pred C
Q 002974 352 K 352 (861)
Q Consensus 352 k 352 (861)
.
T Consensus 105 ~ 105 (111)
T 2jvr_A 105 P 105 (111)
T ss_dssp -
T ss_pred C
Confidence 3
No 206
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.50 E-value=2.5e-14 Score=128.72 Aligned_cols=76 Identities=14% Similarity=0.224 Sum_probs=71.8
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk 437 (861)
..++|||+|||..+++++|+++|++||.|++|++. +.+|||||+|.+.++|++|++.|||..+.|++|+|++++++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 46799999999999999999999999999999976 67999999999999999999999999999999999999874
No 207
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.49 E-value=3.9e-14 Score=130.41 Aligned_cols=81 Identities=23% Similarity=0.421 Sum_probs=73.2
Q ss_pred CcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 002974 357 EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (861)
Q Consensus 357 ~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akp 436 (861)
......++|||+|||..+++++|+++|++||.|+.|++. +|||||+|.+.++|++|++.|||..+.|++|+|+++++
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 344567899999999999999999999999999999986 89999999999999999999999999999999999998
Q ss_pred Cchh
Q 002974 437 GGAR 440 (861)
Q Consensus 437 k~~r 440 (861)
+..+
T Consensus 103 ~~~r 106 (108)
T 2jvo_A 103 PAKR 106 (108)
T ss_dssp CC--
T ss_pred CCCC
Confidence 7643
No 208
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.49 E-value=6.3e-14 Score=133.21 Aligned_cols=80 Identities=21% Similarity=0.383 Sum_probs=74.0
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit-----gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
....++|||+|||..+++++|+++|++||+|+.|++. ++.+|||||+|.+.++|++|++.|||..|.|++|+|++
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999873 56789999999999999999999999999999999999
Q ss_pred ccCCc
Q 002974 434 SRPGG 438 (861)
Q Consensus 434 Akpk~ 438 (861)
++++.
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 99875
No 209
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=4.3e-14 Score=126.66 Aligned_cols=80 Identities=16% Similarity=0.198 Sum_probs=71.8
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~ 438 (861)
....++|||+|||..+++++|+++|++||.|....+.++.+|||||+|.+.++|++|++.|||..|.|++|+|++++++.
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 34568999999999999999999999999996222356789999999999999999999999999999999999999875
No 210
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.6e-13 Score=126.17 Aligned_cols=80 Identities=16% Similarity=0.316 Sum_probs=72.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHcCcccc--------C
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPL--------R 340 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L--------~ 340 (861)
...+.++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..| .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4557899999999999999999999999999999985 567899999999999999999999999999 5
Q ss_pred cceeeeeecCCC
Q 002974 341 RRKLDIHYSIPK 352 (861)
Q Consensus 341 Gr~L~V~~a~~k 352 (861)
+++|.|.|+.++
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 778999998754
No 211
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=7.9e-14 Score=128.41 Aligned_cols=81 Identities=16% Similarity=0.304 Sum_probs=73.3
Q ss_pred cccCCcceEEecccCCCcHHHHH---HHhcccCcEEEEEeCC--------CCccEEEEEECCHHHHHHHHHHhCCCeeCC
Q 002974 358 KDANQGTLVVFNLDSSVSTEELH---QIFGIYGEIREIRDTQ--------HKHNHKFIEFYDIRAAETALRTLNRSDVAG 426 (861)
Q Consensus 358 k~~~~~tLfVgNLp~svTeedLr---elFskfGeI~sVritg--------ksKGfAFVeF~d~eaA~kAL~~LNG~~I~G 426 (861)
+....++|||+|||+.+++++|+ ++|++||+|.+|++.. +.+|||||+|.+.++|++|++.|||..|.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34457899999999999999999 9999999999998732 345899999999999999999999999999
Q ss_pred cEEEEEeccCCc
Q 002974 427 KQIKLEASRPGG 438 (861)
Q Consensus 427 r~IkVe~Akpk~ 438 (861)
++|+|++++++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999999875
No 212
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=8.2e-14 Score=127.57 Aligned_cols=78 Identities=18% Similarity=0.238 Sum_probs=72.5
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCC-----cEEEEEec
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAG-----KQIKLEAS 434 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~G-----r~IkVe~A 434 (861)
....+|||+|||+++++++|+++|++||+|+.|++... |||||+|.+.++|++||+.||+..|.| ++|+|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 34689999999999999999999999999999998644 999999999999999999999999999 99999999
Q ss_pred cCCch
Q 002974 435 RPGGA 439 (861)
Q Consensus 435 kpk~~ 439 (861)
+++..
T Consensus 91 ~~~~~ 95 (108)
T 1x4c_A 91 GPRSP 95 (108)
T ss_dssp SCCSC
T ss_pred CCCCC
Confidence 98763
No 213
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.49 E-value=1e-13 Score=125.01 Aligned_cols=77 Identities=30% Similarity=0.401 Sum_probs=72.0
Q ss_pred ccCCcceEEecccC-CCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 002974 359 DANQGTLVVFNLDS-SVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (861)
Q Consensus 359 ~~~~~tLfVgNLp~-svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk 437 (861)
....++|||+|||. .+++++|+++|++||.|.+|++ .+|||||+|.+.++|++|++.|||..+.|++|+|++++++
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE---CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 34578999999998 9999999999999999999998 4899999999999999999999999999999999999876
Q ss_pred c
Q 002974 438 G 438 (861)
Q Consensus 438 ~ 438 (861)
.
T Consensus 96 ~ 96 (97)
T 2xnq_A 96 A 96 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 214
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=4.6e-14 Score=129.74 Aligned_cols=82 Identities=22% Similarity=0.374 Sum_probs=74.3
Q ss_pred CcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC---CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 357 EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT---QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 357 ~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit---gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
......++|||+|||..+++++|+++|++||+|+.|++. +..+|||||+|.+.++|++|++.|||..|.|++|+|++
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 344567899999999999999999999999999999874 34589999999999999999999999999999999999
Q ss_pred ccCCc
Q 002974 434 SRPGG 438 (861)
Q Consensus 434 Akpk~ 438 (861)
++++.
T Consensus 104 a~~~~ 108 (109)
T 2err_A 104 ATARV 108 (109)
T ss_dssp CCCSC
T ss_pred CCCCc
Confidence 98863
No 215
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.7e-14 Score=134.02 Aligned_cols=81 Identities=17% Similarity=0.210 Sum_probs=73.0
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCC--CeeCCcEEEEEeccCC
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNR--SDVAGKQIKLEASRPG 437 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG--~~I~Gr~IkVe~Akpk 437 (861)
...++|||+|||+++++++|+++|++||+|++|++.. .||||||+|.+.++|++|++.|++ ..|.|++|+|.+++++
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~-~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k 107 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 107 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG-GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCC
Confidence 3467999999999999999999999999999999753 589999999999999999999984 6899999999999987
Q ss_pred chhh
Q 002974 438 GARR 441 (861)
Q Consensus 438 ~~rr 441 (861)
..+.
T Consensus 108 ~~~~ 111 (119)
T 2ad9_A 108 ELKT 111 (119)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 6443
No 216
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.49 E-value=6.4e-14 Score=129.58 Aligned_cols=77 Identities=17% Similarity=0.344 Sum_probs=70.6
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit-----gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
....++|||+|||.++++++|+++|++||+|++|++. ++.+|||||+|.+.++|++|++.|||..|.|++|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 4456899999999999999999999999999999873 45689999999999999999999999999999999999
Q ss_pred cc
Q 002974 434 SR 435 (861)
Q Consensus 434 Ak 435 (861)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 75
No 217
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.49 E-value=2e-13 Score=127.68 Aligned_cols=83 Identities=24% Similarity=0.414 Sum_probs=76.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..+.|+.|+|.+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999986 466899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 002974 349 SIPKDNP 355 (861)
Q Consensus 349 a~~k~~~ 355 (861)
+.++...
T Consensus 111 a~~~~~~ 117 (124)
T 2kt5_A 111 VASQIDL 117 (124)
T ss_dssp ECCTTCC
T ss_pred eCCCCCC
Confidence 9876543
No 218
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.4e-13 Score=123.57 Aligned_cols=78 Identities=23% Similarity=0.342 Sum_probs=72.3
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhccc--CcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIY--GEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskf--GeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akp 436 (861)
....++|||+|||..+++++|+++|++| |.|..|++. ++||||+|.+.++|++|++.||+..|.|++|+|+++++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 3456899999999999999999999999 999999863 78999999999999999999999999999999999998
Q ss_pred Cch
Q 002974 437 GGA 439 (861)
Q Consensus 437 k~~ 439 (861)
+..
T Consensus 89 ~~~ 91 (99)
T 2cpd_A 89 VDK 91 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 763
No 219
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.49 E-value=2.4e-14 Score=128.87 Aligned_cols=77 Identities=29% Similarity=0.426 Sum_probs=72.2
Q ss_pred cceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCch
Q 002974 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (861)
Q Consensus 363 ~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~~ 439 (861)
++|||+|||.++++++|+++|++||+|..|++...++|||||+|.+.++|++|++.|++..+.|++|+|++++++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 47999999999999999999999999999987655799999999999999999999999999999999999998763
No 220
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.49 E-value=7e-14 Score=128.64 Aligned_cols=82 Identities=16% Similarity=0.395 Sum_probs=71.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~ 347 (861)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.+ +..+.|+.|+|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 4556899999999999999999999999999999986 4778999999999999999999976 599999999999
Q ss_pred ecCCCCCC
Q 002974 348 YSIPKDNP 355 (861)
Q Consensus 348 ~a~~k~~~ 355 (861)
++.++...
T Consensus 100 ~a~~~~~~ 107 (109)
T 2rs2_A 100 VAFPRRAQ 107 (109)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99877553
No 221
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.2e-14 Score=132.11 Aligned_cols=80 Identities=21% Similarity=0.438 Sum_probs=73.1
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit-----gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~A 434 (861)
...++|||+|||..+++++|+++|++||.|..|++. ++.+|||||+|.+.++|++|+ .||+..|.|+.|+|+++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 346799999999999999999999999999999874 567899999999999999999 89999999999999999
Q ss_pred cCCchh
Q 002974 435 RPGGAR 440 (861)
Q Consensus 435 kpk~~r 440 (861)
+++..+
T Consensus 102 ~~~~~~ 107 (114)
T 2cq4_A 102 QAEKNR 107 (114)
T ss_dssp HHHHHH
T ss_pred CCCccC
Confidence 876543
No 222
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.49 E-value=1.7e-14 Score=130.61 Aligned_cols=77 Identities=13% Similarity=0.186 Sum_probs=71.9
Q ss_pred CcceEEecccC------CCcHHHHHHHhcccCcEEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCCeeCC-cEE
Q 002974 362 QGTLVVFNLDS------SVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAG-KQI 429 (861)
Q Consensus 362 ~~tLfVgNLp~------svTeedLrelFskfGeI~sVrit-----gksKGfAFVeF~d~eaA~kAL~~LNG~~I~G-r~I 429 (861)
.++|||+|||. ++++++|+++|++||.|.+|++. ++++|||||+|.+.++|++|++.|||..|.| ++|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 57899999999 99999999999999999999863 6789999999999999999999999999999 999
Q ss_pred EEEeccCCc
Q 002974 430 KLEASRPGG 438 (861)
Q Consensus 430 kVe~Akpk~ 438 (861)
+|.++.++.
T Consensus 86 ~V~~a~~~~ 94 (100)
T 3ns6_A 86 FLYTMKDVE 94 (100)
T ss_dssp EEEESHHHH
T ss_pred EEEECchhh
Confidence 999998754
No 223
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.49 E-value=1e-13 Score=133.74 Aligned_cols=80 Identities=23% Similarity=0.427 Sum_probs=75.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCC
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k 352 (861)
...+.++|||+|||+++++++|+++|++||.|..|++...++|||||+|.+.++|++|++.|+|..|.|++|+|.|+.++
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 45678999999999999999999999999999999986668999999999999999999999999999999999999875
No 224
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.49 E-value=8.9e-14 Score=146.35 Aligned_cols=80 Identities=21% Similarity=0.417 Sum_probs=73.1
Q ss_pred ccCCcceEEecccCCCcHHHHH----HHhcccCcEEEEEe--CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 002974 359 DANQGTLVVFNLDSSVSTEELH----QIFGIYGEIREIRD--TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLr----elFskfGeI~sVri--tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe 432 (861)
....++|||+|||.++++++|+ ++|++||.|++|++ +++.+|||||+|.+.++|++|++.|||..|.|+.|+|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 3457899999999999999977 89999999999987 55778999999999999999999999999999999999
Q ss_pred eccCCc
Q 002974 433 ASRPGG 438 (861)
Q Consensus 433 ~Akpk~ 438 (861)
+++.+.
T Consensus 86 ~a~~~~ 91 (282)
T 3pgw_A 86 YAKTDS 91 (282)
T ss_pred EeccCc
Confidence 997755
No 225
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.6e-14 Score=128.96 Aligned_cols=82 Identities=22% Similarity=0.371 Sum_probs=74.6
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~A 434 (861)
...++|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 44689999999999999999999999999999876 3455899999999999999999999999999999999999
Q ss_pred cCCchhh
Q 002974 435 RPGGARR 441 (861)
Q Consensus 435 kpk~~rr 441 (861)
.++..+.
T Consensus 86 ~~~~~~~ 92 (104)
T 1p1t_A 86 ASEKNKE 92 (104)
T ss_dssp TCTTHHH
T ss_pred CCccchh
Confidence 9887544
No 226
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=7.9e-14 Score=128.74 Aligned_cols=81 Identities=22% Similarity=0.294 Sum_probs=73.5
Q ss_pred CcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Q 002974 357 EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKL 431 (861)
Q Consensus 357 ~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit-----gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkV 431 (861)
..+...++|||+|||..+++++|+++|++||+|+.|++. ++.+|||||+|.+.++|++|++.|++ .|.|++|+|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 345567899999999999999999999999999999873 45689999999999999999999998 899999999
Q ss_pred EeccCCc
Q 002974 432 EASRPGG 438 (861)
Q Consensus 432 e~Akpk~ 438 (861)
++++++.
T Consensus 91 ~~a~~~~ 97 (116)
T 2cqd_A 91 NLAYLGA 97 (116)
T ss_dssp EESTTTC
T ss_pred EEcccCC
Confidence 9998764
No 227
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=6.6e-14 Score=125.75 Aligned_cols=79 Identities=24% Similarity=0.335 Sum_probs=73.5
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~ 438 (861)
....++|||+|||..+++++|+++|++||+|+.|++. +.+|||||+|.+.++|++|++.||+..|.|++|+|++++++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE-TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 3456899999999999999999999999999999975 468999999999999999999999999999999999999875
No 228
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.48 E-value=8.5e-14 Score=125.03 Aligned_cols=77 Identities=22% Similarity=0.332 Sum_probs=70.5
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEE--------EEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeC
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE--------IRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVA 425 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~s--------Vri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~ 425 (861)
....++|||+|||..+++++|+++|++||.|.+ |++ +++.+|||||+|.+.++|++|++.|||..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 445789999999999999999999999999988 765 3556899999999999999999999999999
Q ss_pred CcEEEEEecc
Q 002974 426 GKQIKLEASR 435 (861)
Q Consensus 426 Gr~IkVe~Ak 435 (861)
|++|+|++|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999974
No 229
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.48 E-value=1.2e-13 Score=133.80 Aligned_cols=83 Identities=25% Similarity=0.464 Sum_probs=76.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~ 347 (861)
...+.++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|+.|+|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456899999999999999999999999999999985 57799999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 002974 348 YSIPKDNP 355 (861)
Q Consensus 348 ~a~~k~~~ 355 (861)
++.++..+
T Consensus 146 ~a~~~~~~ 153 (158)
T 2kn4_A 146 MARYGRPP 153 (158)
T ss_dssp EECCSSCC
T ss_pred ECCCCCCC
Confidence 99876544
No 230
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.48 E-value=8.2e-14 Score=122.01 Aligned_cols=76 Identities=29% Similarity=0.431 Sum_probs=70.4
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Ak 435 (861)
..++|||+|||..+++++|+++|++||.|..|++ +++++|||||+|.+.++|++|+ .||+..+.|++|+|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3578999999999999999999999999999876 4556899999999999999999 899999999999999998
Q ss_pred CC
Q 002974 436 PG 437 (861)
Q Consensus 436 pk 437 (861)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 75
No 231
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=6.2e-14 Score=128.69 Aligned_cols=83 Identities=20% Similarity=0.350 Sum_probs=74.4
Q ss_pred cccCCcceEEecccCCCcHHHHHHHhcccCcEE--------EEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCee
Q 002974 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIR--------EIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDV 424 (861)
Q Consensus 358 k~~~~~tLfVgNLp~svTeedLrelFskfGeI~--------sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I 424 (861)
.....++|||+|||..+++++|+++|++||.|. .|++ +++.+|||||+|.+.++|++|++.||+..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999998 5765 345689999999999999999999999999
Q ss_pred CCcEEEEEeccCCchh
Q 002974 425 AGKQIKLEASRPGGAR 440 (861)
Q Consensus 425 ~Gr~IkVe~Akpk~~r 440 (861)
.|++|+|++++++..+
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999987643
No 232
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.4e-13 Score=126.36 Aligned_cols=80 Identities=16% Similarity=0.177 Sum_probs=72.5
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~A 434 (861)
....++|||+|||..+++++|+++|++||+|++|++ .++.++||||+|.+.++|++|++.||+..|.|++|+|+++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 345689999999999999999999999999999876 3345899999999999999999999999999999999999
Q ss_pred cCCc
Q 002974 435 RPGG 438 (861)
Q Consensus 435 kpk~ 438 (861)
+...
T Consensus 92 ~~~~ 95 (114)
T 2do0_A 92 ERAL 95 (114)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 8654
No 233
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.1e-13 Score=125.90 Aligned_cols=81 Identities=12% Similarity=0.201 Sum_probs=73.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEE-EEe----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRT-IYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~s-vki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~ 347 (861)
.....++|||+|||+++++++|+++|++||.|.. |++ +++++|||||+|.+.++|++|++. ++..+.||.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 4456899999999999999999999999999987 764 678999999999999999999986 9999999999999
Q ss_pred ecCCCCC
Q 002974 348 YSIPKDN 354 (861)
Q Consensus 348 ~a~~k~~ 354 (861)
++.+++.
T Consensus 90 ~~~~~~~ 96 (104)
T 1wg5_A 90 KSSRAEV 96 (104)
T ss_dssp EECTTTS
T ss_pred ECCHHHH
Confidence 9876543
No 234
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.48 E-value=2.3e-14 Score=127.20 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=68.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
..+.++|||+|||+++++++|+++|++||.|..+++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 345799999999999999999999999999865442 567899999999999999999999999999999999998
Q ss_pred cC
Q 002974 349 SI 350 (861)
Q Consensus 349 a~ 350 (861)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 235
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.48 E-value=6.1e-14 Score=130.60 Aligned_cols=79 Identities=27% Similarity=0.424 Sum_probs=73.0
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Ak 435 (861)
...++|||+|||.++++++|+++|++||.|+.|++ +++.+|||||+|.+.++|++|++.|||..|.|++|+|++++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 34679999999999999999999999999999887 35568999999999999999999999999999999999998
Q ss_pred CCc
Q 002974 436 PGG 438 (861)
Q Consensus 436 pk~ 438 (861)
++.
T Consensus 85 ~~~ 87 (116)
T 2fy1_A 85 KPS 87 (116)
T ss_dssp CSS
T ss_pred CCC
Confidence 765
No 236
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.48 E-value=3.3e-14 Score=136.07 Aligned_cols=86 Identities=26% Similarity=0.461 Sum_probs=78.2
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCccee
Q 002974 270 HPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKL 344 (861)
Q Consensus 270 ~~~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L 344 (861)
.+....+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|++|
T Consensus 40 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 119 (135)
T 2lea_A 40 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 119 (135)
T ss_dssp SCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 3445667899999999999999999999999999999985 56789999999999999999999999999999999
Q ss_pred eeeecCCCCCC
Q 002974 345 DIHYSIPKDNP 355 (861)
Q Consensus 345 ~V~~a~~k~~~ 355 (861)
+|.|+.++..+
T Consensus 120 ~V~~a~~~~~~ 130 (135)
T 2lea_A 120 RVQMARYGRPP 130 (135)
T ss_dssp EEEECCCCCCC
T ss_pred EEEECCCCCCC
Confidence 99999876554
No 237
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=6.3e-14 Score=128.41 Aligned_cols=78 Identities=13% Similarity=0.312 Sum_probs=71.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
.+.+.++|||+|||+++|+++|+++|++||+|..|++ .+.++|||||+|.+.++|++|++ +++..+.|+.|.|.+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999985 36789999999999999999998 999999999999998
Q ss_pred cCC
Q 002974 349 SIP 351 (861)
Q Consensus 349 a~~ 351 (861)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 754
No 238
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.48 E-value=1.3e-13 Score=124.67 Aligned_cols=80 Identities=19% Similarity=0.260 Sum_probs=72.2
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
....++|||+|||..+++++|+++|++|| |..|++ +++.+|||||+|.+.++|++|+ .||+..|.|++|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 44578999999999999999999999997 999876 3556899999999999999999 8999999999999999
Q ss_pred ccCCchh
Q 002974 434 SRPGGAR 440 (861)
Q Consensus 434 Akpk~~r 440 (861)
++++..+
T Consensus 90 a~~~~~~ 96 (103)
T 2dng_A 90 AEGRKQD 96 (103)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 9987643
No 239
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=6.2e-14 Score=126.67 Aligned_cols=82 Identities=22% Similarity=0.254 Sum_probs=74.8
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcc-cCcEEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCCe-eCCcEEEEEe
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGI-YGEIREIRD----TQHKHNHKFIEFYDIRAAETALRTLNRSD-VAGKQIKLEA 433 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFsk-fGeI~sVri----tgksKGfAFVeF~d~eaA~kAL~~LNG~~-I~Gr~IkVe~ 433 (861)
....+|||+|||..+++++|+++|++ ||.|.+|++ +++++|||||+|.+.++|++|++.|++.. |.|++|+|++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 45689999999999999999999999 999999887 45578999999999999999999999999 9999999999
Q ss_pred ccCCchhh
Q 002974 434 SRPGGARR 441 (861)
Q Consensus 434 Akpk~~rr 441 (861)
+.++..+.
T Consensus 87 a~~~~~~~ 94 (104)
T 2dhg_A 87 AIPKASRV 94 (104)
T ss_dssp CCCCCSCC
T ss_pred ccCCCcCC
Confidence 98876443
No 240
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=7.9e-14 Score=125.50 Aligned_cols=82 Identities=29% Similarity=0.450 Sum_probs=72.9
Q ss_pred cccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 002974 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (861)
Q Consensus 358 k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akp 436 (861)
.....++|||+|||..+++++|+++|++||.|.-++. .++.+|||||+|.+.++|++|++.||+..|.|++|+|+++++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 3456789999999999999999999999999854433 556799999999999999999999999999999999999998
Q ss_pred Cch
Q 002974 437 GGA 439 (861)
Q Consensus 437 k~~ 439 (861)
+..
T Consensus 91 ~~~ 93 (101)
T 2fc9_A 91 RGS 93 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 241
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.4e-13 Score=123.99 Aligned_cols=84 Identities=21% Similarity=0.370 Sum_probs=74.8
Q ss_pred CcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe--CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 002974 357 EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD--TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (861)
Q Consensus 357 ~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri--tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~A 434 (861)
......++|||+|||..+++++|+++|+.|+.|.-+.. +++.+|||||+|.+.++|++|++.||+..|.|++|+|+++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 34556789999999999999999999999987776653 5567899999999999999999999999999999999999
Q ss_pred cCCchh
Q 002974 435 RPGGAR 440 (861)
Q Consensus 435 kpk~~r 440 (861)
+++..+
T Consensus 90 ~~~~~~ 95 (102)
T 2fc8_A 90 KPKGEG 95 (102)
T ss_dssp CCCCSS
T ss_pred cCCCCC
Confidence 987644
No 242
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.48 E-value=7.3e-14 Score=130.62 Aligned_cols=82 Identities=24% Similarity=0.387 Sum_probs=74.5
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
....++|||+|||..+++++|+++|++||.|..|.+ ++.++|||||+|.+.++|++|++.||+..|.|+.|+|++
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 345679999999999999999999999999999987 445589999999999999999999999999999999999
Q ss_pred ccCCchh
Q 002974 434 SRPGGAR 440 (861)
Q Consensus 434 Akpk~~r 440 (861)
+.++..+
T Consensus 99 a~~~~~~ 105 (126)
T 3ex7_B 99 CFVRGPP 105 (126)
T ss_dssp SEESSSC
T ss_pred ecCCCCC
Confidence 9876643
No 243
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.48 E-value=5.5e-14 Score=138.08 Aligned_cols=78 Identities=14% Similarity=0.267 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCC--CEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeee
Q 002974 275 HPSRTLFVRNINSNVEDSELKALFEQFG--DIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (861)
Q Consensus 275 ~~srtLfVgNLP~~vTEedL~elFsqfG--~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~ 347 (861)
...++|||+|||+++++++|+++|++|| .|..|++ +++++|||||+|.+.++|++||+.|+|..|.|+.|+|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3578999999999999999999999999 9999985 68899999999999999999999999999999999999
Q ss_pred ecCCC
Q 002974 348 YSIPK 352 (861)
Q Consensus 348 ~a~~k 352 (861)
++.++
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 99753
No 244
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.47 E-value=1.8e-14 Score=134.35 Aligned_cols=78 Identities=22% Similarity=0.377 Sum_probs=71.6
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~A 434 (861)
...++|||+|||..+++++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|+ .|||..|.|+.|+|+++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 34679999999999999999999999999999876 4567999999999999999999 79999999999999999
Q ss_pred cCCc
Q 002974 435 RPGG 438 (861)
Q Consensus 435 kpk~ 438 (861)
++..
T Consensus 113 ~~~~ 116 (124)
T 2jwn_A 113 RTNM 116 (124)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8754
No 245
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=9.6e-14 Score=132.25 Aligned_cols=82 Identities=15% Similarity=0.267 Sum_probs=73.9
Q ss_pred cCCcceEEecccCCCcHHHHH----HHhcccCcEEEEEe--CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 360 ANQGTLVVFNLDSSVSTEELH----QIFGIYGEIREIRD--TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLr----elFskfGeI~sVri--tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
...++|||+|||+.+++++|+ ++|++||+|.+|.+ +++++|||||+|.+.++|.+|++.|||..|.|++|+|.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 346789999999999999876 69999999999887 357899999999999999999999999999999999999
Q ss_pred ccCCchhh
Q 002974 434 SRPGGARR 441 (861)
Q Consensus 434 Akpk~~rr 441 (861)
++.+....
T Consensus 107 a~~~~~~~ 114 (127)
T 2a3j_A 107 SETPQSQV 114 (127)
T ss_dssp CCCCCHHH
T ss_pred ccCcchhc
Confidence 99876444
No 246
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.47 E-value=1.3e-13 Score=133.95 Aligned_cols=81 Identities=23% Similarity=0.318 Sum_probs=74.4
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~A 434 (861)
...++|||+|||..+++++|+++|++||+|+.|++ ++..++||||+|.+.++|++||+.||+..|.|++|+|+++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999987 4567899999999999999999999999999999999999
Q ss_pred cCCchh
Q 002974 435 RPGGAR 440 (861)
Q Consensus 435 kpk~~r 440 (861)
+++..+
T Consensus 117 ~~~~~~ 122 (156)
T 1h2v_Z 117 AGFKEG 122 (156)
T ss_dssp SCCCTT
T ss_pred CCCCCc
Confidence 886543
No 247
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=7.6e-14 Score=128.97 Aligned_cols=77 Identities=19% Similarity=0.259 Sum_probs=72.2
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~ 438 (861)
..++|||+|||..+++++|+++|++||.|..|++. ..++||||+|.+.++|++|++.|||..|.|++|+|+|+....
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP-EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC-SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 45799999999999999999999999999999975 588999999999999999999999999999999999998654
No 248
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.47 E-value=1e-13 Score=126.44 Aligned_cols=80 Identities=16% Similarity=0.202 Sum_probs=72.3
Q ss_pred ccCCcceEEecccCCC------cHHHHHHHhcccCcEEEEEeC---CCCccEEEEEECCHHHHHHHHHHhCCCeeCCc-E
Q 002974 359 DANQGTLVVFNLDSSV------STEELHQIFGIYGEIREIRDT---QHKHNHKFIEFYDIRAAETALRTLNRSDVAGK-Q 428 (861)
Q Consensus 359 ~~~~~tLfVgNLp~sv------TeedLrelFskfGeI~sVrit---gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr-~ 428 (861)
....++|||+|||..+ ++++|+++|++||.|..|++. ++++|||||+|.+.++|++|++.|||..|.|+ +
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 3446799999999999 789999999999999999874 46689999999999999999999999999998 9
Q ss_pred EEEEeccCCc
Q 002974 429 IKLEASRPGG 438 (861)
Q Consensus 429 IkVe~Akpk~ 438 (861)
|+|.++....
T Consensus 92 l~V~~a~~~~ 101 (105)
T 2nlw_A 92 FRVNLFTDFD 101 (105)
T ss_dssp EEEECSCCCC
T ss_pred EEEEEcchHh
Confidence 9999998653
No 249
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=4.8e-14 Score=125.08 Aligned_cols=79 Identities=24% Similarity=0.311 Sum_probs=71.3
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCc-EEEEEeCCCCccEEEEEECCHHHHHHHHHHhCC-CeeCCcEEEEEeccCC
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGE-IREIRDTQHKHNHKFIEFYDIRAAETALRTLNR-SDVAGKQIKLEASRPG 437 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGe-I~sVritgksKGfAFVeF~d~eaA~kAL~~LNG-~~I~Gr~IkVe~Akpk 437 (861)
...++|||+|||..+++++|+++|++||. |..+.+ .++|||||+|.+.++|++|++.||| ..+.|++|+|++++++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL--LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE--EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE--cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 35679999999999999999999999999 665655 4689999999999999999999999 9999999999999987
Q ss_pred chh
Q 002974 438 GAR 440 (861)
Q Consensus 438 ~~r 440 (861)
..+
T Consensus 84 ~~~ 86 (93)
T 2cqh_A 84 KLR 86 (93)
T ss_dssp CCC
T ss_pred ccc
Confidence 644
No 250
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.47 E-value=1.5e-13 Score=124.77 Aligned_cols=76 Identities=20% Similarity=0.361 Sum_probs=70.5
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Ak 435 (861)
...++|||+|||..+++++|+++|++||.|+.|++ +++.+|||||+|.+.++|++|++.||+..|.|++|+|+++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 45689999999999999999999999999999876 34568999999999999999999999999999999999985
No 251
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.47 E-value=7.6e-14 Score=124.34 Aligned_cols=81 Identities=21% Similarity=0.399 Sum_probs=73.9
Q ss_pred cCCcceEEecccCCCcHHHHH----HHhcccCcEEEEEeC--CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 360 ANQGTLVVFNLDSSVSTEELH----QIFGIYGEIREIRDT--QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLr----elFskfGeI~sVrit--gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
...++|||+|||..+++++|+ ++|++||.|..|++. +..+|||||+|.+.++|++|++.|||..+.|++|+|++
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 85 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356799999999999999999 999999999999874 35689999999999999999999999999999999999
Q ss_pred ccCCchh
Q 002974 434 SRPGGAR 440 (861)
Q Consensus 434 Akpk~~r 440 (861)
++++...
T Consensus 86 a~~~~~~ 92 (97)
T 1nu4_A 86 AKTDSDI 92 (97)
T ss_dssp CSSCCTH
T ss_pred ccCCCcc
Confidence 9987643
No 252
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=7.3e-14 Score=125.08 Aligned_cols=79 Identities=23% Similarity=0.338 Sum_probs=72.5
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEE-EEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcE----E
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIR-EIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQ----I 429 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~-sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~----I 429 (861)
...++|||+|||..+++++|+++|++||+|. .|++ +++++|||||+|.+.++|++|++.|||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4568999999999999999999999999999 8876 3566899999999999999999999999999999 9
Q ss_pred EEEeccCCc
Q 002974 430 KLEASRPGG 438 (861)
Q Consensus 430 kVe~Akpk~ 438 (861)
+|.++++..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999998764
No 253
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=9e-14 Score=127.82 Aligned_cols=81 Identities=25% Similarity=0.312 Sum_probs=73.2
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcE----EEEEe-CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEI----REIRD-TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI----~sVri-tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~A 434 (861)
...++|||+|||..+++++|+++|++||.| ..+++ +++.+|||||+|.+.++|++|++.||+..|.|++|+|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 456899999999999999999999999998 45543 6788999999999999999999999999999999999999
Q ss_pred cCCchh
Q 002974 435 RPGGAR 440 (861)
Q Consensus 435 kpk~~r 440 (861)
+++..+
T Consensus 103 ~~~~~~ 108 (115)
T 2cpx_A 103 KNKKQR 108 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCC
Confidence 987644
No 254
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.46 E-value=5e-14 Score=119.87 Aligned_cols=70 Identities=19% Similarity=0.427 Sum_probs=65.9
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeec
Q 002974 279 TLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (861)
Q Consensus 279 tLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a 349 (861)
+|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++ |++..+.|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5999999999999999999999999999985 57789999999999999999997 9999999999999875
No 255
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.46 E-value=1.2e-13 Score=127.24 Aligned_cols=81 Identities=27% Similarity=0.393 Sum_probs=74.0
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEEEe--CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD--TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sVri--tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~ 438 (861)
..++|||+|||..+++++|+++|++||.|..|++ .+..+|||||+|.+.++|.+|++.|||..+.|+.|+|.++.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANR 86 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCh
Confidence 4579999999999999999999999999999987 45668999999999999999999999999999999999998765
Q ss_pred hhh
Q 002974 439 ARR 441 (861)
Q Consensus 439 ~rr 441 (861)
..+
T Consensus 87 ~~~ 89 (115)
T 3lqv_A 87 AFQ 89 (115)
T ss_dssp HTT
T ss_pred hhh
Confidence 443
No 256
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.46 E-value=2.5e-13 Score=126.99 Aligned_cols=79 Identities=16% Similarity=0.283 Sum_probs=72.9
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Ak 435 (861)
...++|||+|||..+++++|+++|++||+|+.|++ +++.+|||||+|.+.++|++|++.|||..|.|++|+|+++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 45679999999999999999999999999999887 34578999999999999999999999999999999999998
Q ss_pred CCc
Q 002974 436 PGG 438 (861)
Q Consensus 436 pk~ 438 (861)
+..
T Consensus 113 ~~~ 115 (124)
T 2kt5_A 113 SQI 115 (124)
T ss_dssp CTT
T ss_pred CCC
Confidence 764
No 257
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.46 E-value=6.4e-14 Score=123.52 Aligned_cols=76 Identities=16% Similarity=0.367 Sum_probs=71.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCC
Q 002974 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (861)
Q Consensus 275 ~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k 352 (861)
+..++|||+|||+++++++|+++|++| .|..+++. +++|||||+|.+.++|++|++.|+|..+.|++|+|.++..+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 457899999999999999999999999 99999884 89999999999999999999999999999999999998654
No 258
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=4.7e-14 Score=129.87 Aligned_cols=78 Identities=18% Similarity=0.407 Sum_probs=72.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
+...++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|+ .|++..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 345799999999999999999999999999999986 3778999999999999999999 8999999999999999
Q ss_pred cCCC
Q 002974 349 SIPK 352 (861)
Q Consensus 349 a~~k 352 (861)
+.++
T Consensus 101 a~~~ 104 (114)
T 2cq4_A 101 SQAE 104 (114)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 8754
No 259
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.46 E-value=8.3e-14 Score=136.82 Aligned_cols=81 Identities=10% Similarity=0.148 Sum_probs=73.3
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccC--cEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYG--EIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfG--eI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
..++|||+|||+.+++++|+++|++|| +|.+|++ +++++|||||+|.+.++|++||+.|||..|.|++|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 357999999999999999999999999 9999886 567799999999999999999999999999999999999
Q ss_pred ccCCchhh
Q 002974 434 SRPGGARR 441 (861)
Q Consensus 434 Akpk~~rr 441 (861)
+.++..+.
T Consensus 134 a~~~~~~~ 141 (156)
T 3n9u_C 134 ATRQNLSQ 141 (156)
T ss_dssp CCHHHHHH
T ss_pred cCCCcchh
Confidence 98865443
No 260
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.46 E-value=2.5e-14 Score=125.92 Aligned_cols=76 Identities=24% Similarity=0.441 Sum_probs=67.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCC
Q 002974 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (861)
Q Consensus 278 rtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k 352 (861)
++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.+ |++|++.|+|..+.|+.|+|.++.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999986 3678999999999999 99999999999999999999999876
Q ss_pred CC
Q 002974 353 DN 354 (861)
Q Consensus 353 ~~ 354 (861)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 44
No 261
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.6e-13 Score=121.57 Aligned_cols=78 Identities=22% Similarity=0.365 Sum_probs=71.8
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCch
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~~ 439 (861)
...++|||+|| .+++++|+++|++||+|..|++ .+.+|||||+|.+.++|++|++.||+..|.|++|+|.+++++..
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe-cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 45689999996 8999999999999999999997 47899999999999999999999999999999999999998764
Q ss_pred h
Q 002974 440 R 440 (861)
Q Consensus 440 r 440 (861)
+
T Consensus 90 ~ 90 (97)
T 1x5p_A 90 L 90 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 262
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.46 E-value=1.2e-13 Score=132.42 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=71.4
Q ss_pred cceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccE-EEEEECCHHHHHHHHHHhCCCeeCC--cEEEEEeccCCc
Q 002974 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNH-KFIEFYDIRAAETALRTLNRSDVAG--KQIKLEASRPGG 438 (861)
Q Consensus 363 ~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGf-AFVeF~d~eaA~kAL~~LNG~~I~G--r~IkVe~Akpk~ 438 (861)
-.|||+||++.+|+++|+++|++||+|.+|++..+.+|| |||+|.+.++|++|++.|||..|.| ++|+|+|++++.
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 468899999999999999999999999999987677888 9999999999999999999999988 999999999875
No 263
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.46 E-value=1.4e-13 Score=135.29 Aligned_cols=85 Identities=20% Similarity=0.409 Sum_probs=75.7
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceee
Q 002974 271 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (861)
Q Consensus 271 ~~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~ 345 (861)
+....+.++|||+|||+.+++++|+++|++||.|..|.+ ++.++|||||+|.+.++|++||+.|+|..|.|+.|.
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 445667899999999999999999999999999999985 567899999999999999999999999999999999
Q ss_pred eeecCCCCCC
Q 002974 346 IHYSIPKDNP 355 (861)
Q Consensus 346 V~~a~~k~~~ 355 (861)
|.|+.++...
T Consensus 146 V~~a~~~~~~ 155 (165)
T 1rk8_A 146 VDWCFVKGPK 155 (165)
T ss_dssp EEESEECC--
T ss_pred EEEecCCCCC
Confidence 9999876543
No 264
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.46 E-value=8e-14 Score=124.82 Aligned_cols=77 Identities=30% Similarity=0.420 Sum_probs=71.5
Q ss_pred cCCcceEEecccC-CCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 002974 360 ANQGTLVVFNLDS-SVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (861)
Q Consensus 360 ~~~~tLfVgNLp~-svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~ 438 (861)
...++|||+|||. .+++++|+++|++||.|.+|++ .+|||||+|.+.++|++|++.||+..+.|++|+|++++++.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE---ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 4567999999998 9999999999999999999997 48999999999999999999999999999999999998765
Q ss_pred h
Q 002974 439 A 439 (861)
Q Consensus 439 ~ 439 (861)
.
T Consensus 85 ~ 85 (96)
T 2kvi_A 85 R 85 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 265
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.46 E-value=1.8e-13 Score=119.70 Aligned_cols=75 Identities=23% Similarity=0.370 Sum_probs=68.3
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
....++|||+|||+.+++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++ +++..|.|++|+|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 456789999999999999999999999999999986 35668999999999999999997 588899999999987
Q ss_pred c
Q 002974 434 S 434 (861)
Q Consensus 434 A 434 (861)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 266
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.3e-13 Score=125.53 Aligned_cols=80 Identities=21% Similarity=0.250 Sum_probs=72.9
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCc-EEEEEeC------CCCccEEEEEECCHHHHHHHHHHhC--CCeeCCcEEE
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGE-IREIRDT------QHKHNHKFIEFYDIRAAETALRTLN--RSDVAGKQIK 430 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGe-I~sVrit------gksKGfAFVeF~d~eaA~kAL~~LN--G~~I~Gr~Ik 430 (861)
...++|||+|||..+++++|+++|++||. |.+|.+. ++++|||||+|.+.++|++|++.|+ +..+.|++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 34679999999999999999999999998 9999874 3678999999999999999999996 5899999999
Q ss_pred EEeccCCch
Q 002974 431 LEASRPGGA 439 (861)
Q Consensus 431 Ve~Akpk~~ 439 (861)
|++++++..
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999998764
No 267
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=9.5e-14 Score=124.11 Aligned_cols=79 Identities=19% Similarity=0.197 Sum_probs=70.3
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~A 434 (861)
...++|||+|||..+++++|+++|++||.|..+++ +++.+|||||+|.+.++|++|++.||+..|.|++|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 44678999999999999999999999999865332 4567899999999999999999999999999999999999
Q ss_pred cCCc
Q 002974 435 RPGG 438 (861)
Q Consensus 435 kpk~ 438 (861)
..+.
T Consensus 93 ~~~~ 96 (98)
T 2cqp_A 93 SGPS 96 (98)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 8653
No 268
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.45 E-value=6.3e-14 Score=139.77 Aligned_cols=126 Identities=22% Similarity=0.334 Sum_probs=99.2
Q ss_pred CcceEEecccC-CCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCchh
Q 002974 362 QGTLVVFNLDS-SVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGAR 440 (861)
Q Consensus 362 ~~tLfVgNLp~-svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~~r 440 (861)
.++|||+|||. .+++++|+++|++||.|.+|++....+|||||+|.+.++|++|++.|+|..+.|++|+|.+++++...
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 82 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQ 82 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcC
Confidence 57899999999 99999999999999999999987777999999999999999999999999999999999999865311
Q ss_pred h-hchhhhh-------------------------hhccccCC-CCCCCCCCcccc----CCcc-cEEEEeC-CCCCccee
Q 002974 441 R-FMVQSEQ-------------------------EQDDLNLC-QIPFDDLSSGQM----VSSG-VITSTCM-DNGSIQVL 487 (861)
Q Consensus 441 r-l~qq~eq-------------------------~q~E~~vg-kNLp~s~tee~L----s~fG-~I~Sv~~-enG~srGF 487 (861)
. .....+. ......+. +||+.++++++| ..|| .|..++. .+.+..||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~af 162 (198)
T 1qm9_A 83 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMAL 162 (198)
T ss_dssp CSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEE
T ss_pred CCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEE
Confidence 1 0000000 00011122 899999999998 8999 9988884 44444455
No 269
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.45 E-value=1.8e-13 Score=125.95 Aligned_cols=82 Identities=21% Similarity=0.363 Sum_probs=70.8
Q ss_pred cccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 002974 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (861)
Q Consensus 358 k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit-----gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe 432 (861)
.....++|||+|||..+++++|+++|++||+|.+|++. +.++|||||+|.+.++|++|++.+ +..|.|+.|+|+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 34557899999999999999999999999999999873 566899999999999999999976 599999999999
Q ss_pred eccCCchh
Q 002974 433 ASRPGGAR 440 (861)
Q Consensus 433 ~Akpk~~r 440 (861)
++.++..+
T Consensus 100 ~a~~~~~~ 107 (109)
T 2rs2_A 100 VAFPRRAQ 107 (109)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99987643
No 270
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1e-13 Score=125.61 Aligned_cols=82 Identities=27% Similarity=0.417 Sum_probs=74.1
Q ss_pred cccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 002974 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (861)
Q Consensus 358 k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe 432 (861)
.....++|||+|||..+++++|+++|++||+|..|++ ++..+|||||+|.+.++|++||+. ++..|.|++|+|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 3456789999999999999999999999999999876 345689999999999999999998 9999999999999
Q ss_pred eccCCchh
Q 002974 433 ASRPGGAR 440 (861)
Q Consensus 433 ~Akpk~~r 440 (861)
+++++..+
T Consensus 91 ~a~~~~~~ 98 (105)
T 2dh8_A 91 PCTPRGMQ 98 (105)
T ss_dssp CSCCSSCC
T ss_pred EccCCCCC
Confidence 99987644
No 271
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.3e-13 Score=127.28 Aligned_cols=81 Identities=17% Similarity=0.431 Sum_probs=74.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
..+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++. ++..|.|+.|+|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 345799999999999999999999999999999985 467899999999999999999987 99999999999999
Q ss_pred cCCCCCC
Q 002974 349 SIPKDNP 355 (861)
Q Consensus 349 a~~k~~~ 355 (861)
+.++...
T Consensus 103 a~~~~~~ 109 (116)
T 1x4b_A 103 AVAREES 109 (116)
T ss_dssp CSSCCCC
T ss_pred CCCCccC
Confidence 9887654
No 272
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=8.4e-14 Score=128.56 Aligned_cols=81 Identities=11% Similarity=0.262 Sum_probs=73.1
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit-----gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
....++|||+|||..+++++|+++|++||.|..|++. +..+|||||+|.+.++|++||+. ++..|.|++|+|++
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 3446899999999999999999999999999998862 45689999999999999999997 99999999999999
Q ss_pred ccCCchh
Q 002974 434 SRPGGAR 440 (861)
Q Consensus 434 Akpk~~r 440 (861)
++++..+
T Consensus 103 a~~~~~~ 109 (116)
T 1x4b_A 103 AVAREES 109 (116)
T ss_dssp CSSCCCC
T ss_pred CCCCccC
Confidence 9987643
No 273
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.45 E-value=4e-14 Score=127.40 Aligned_cols=81 Identities=16% Similarity=0.244 Sum_probs=71.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE----eCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeec
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY----TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svk----itgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a 349 (861)
..+.++|||+|||.++++++|+++|++||.|..+. .+++++|||||+|.+.++|++|++ |++..|.|+.|+|.++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 44689999999999999999999999999775521 257889999999999999999998 9999999999999999
Q ss_pred CCCCCC
Q 002974 350 IPKDNP 355 (861)
Q Consensus 350 ~~k~~~ 355 (861)
.++...
T Consensus 93 ~~~~~~ 98 (101)
T 1fj7_A 93 KGRDGT 98 (101)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 876543
No 274
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=6.2e-14 Score=128.48 Aligned_cols=78 Identities=9% Similarity=0.154 Sum_probs=71.3
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC----CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit----gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~A 434 (861)
+...++|||+|||+++|+++|+++|++||+|.+|++. +.++|||||+|.+.++|++|+. +++..|.|+.|+|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3456899999999999999999999999999999873 5678999999999999999999 9999999999999988
Q ss_pred cCC
Q 002974 435 RPG 437 (861)
Q Consensus 435 kpk 437 (861)
...
T Consensus 87 ~~~ 89 (103)
T 1s79_A 87 DDY 89 (103)
T ss_dssp HHH
T ss_pred hHH
Confidence 754
No 275
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=3e-13 Score=120.40 Aligned_cols=80 Identities=23% Similarity=0.303 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE-e-CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCC
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY-T-ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svk-i-tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~ 351 (861)
....++|||+|||+++++++|+++|++||.|..|+ + ..+..+.|||+|.+.++|++|++.|+|..|.|++|+|.++.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 34579999999999999999999999999999994 4 444556699999999999999999999999999999999988
Q ss_pred CC
Q 002974 352 KD 353 (861)
Q Consensus 352 k~ 353 (861)
++
T Consensus 92 ~~ 93 (96)
T 2e44_A 92 EM 93 (96)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 276
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=5e-14 Score=120.13 Aligned_cols=71 Identities=17% Similarity=0.430 Sum_probs=66.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeec
Q 002974 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (861)
Q Consensus 278 rtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a 349 (861)
++|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.++ ..+.|++|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 58999999999999999999999999998875 47789999999999999999999999 9999999999987
No 277
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.44 E-value=9e-14 Score=125.58 Aligned_cols=78 Identities=21% Similarity=0.333 Sum_probs=69.2
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC------CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT------QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit------gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe 432 (861)
....++|||+|||.++++++|+++|++|| |.+|++. ++++|||||+|.+.++|++|+ .|||..|.|+.|+|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34568999999999999999999999999 9999873 446899999999999999999 899999999999999
Q ss_pred eccCCc
Q 002974 433 ASRPGG 438 (861)
Q Consensus 433 ~Akpk~ 438 (861)
+++++.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998864
No 278
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=5.1e-13 Score=118.96 Aligned_cols=81 Identities=17% Similarity=0.308 Sum_probs=70.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCCC
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKD 353 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k~ 353 (861)
....++|||+|||.++++++|+++|++||.|..|........||||+|.+.++|++|++ |++..|.|+.|.|.++.++.
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 34578999999999999999999999999999985433222299999999999999999 99999999999999997665
Q ss_pred CC
Q 002974 354 NP 355 (861)
Q Consensus 354 ~~ 355 (861)
..
T Consensus 84 ~~ 85 (94)
T 2e5g_A 84 FQ 85 (94)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 279
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=4.2e-13 Score=119.46 Aligned_cols=79 Identities=15% Similarity=0.140 Sum_probs=71.4
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEEEE-eC-CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIR-DT-QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~sVr-it-gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk 437 (861)
...++|||+|||+.+++++|+++|++||.|..|+ +. ....+.|||+|.+.++|++|++.|||..|.|++|+|+++.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 3467999999999999999999999999999995 43 334566999999999999999999999999999999999987
Q ss_pred c
Q 002974 438 G 438 (861)
Q Consensus 438 ~ 438 (861)
.
T Consensus 93 ~ 93 (96)
T 2e44_A 93 M 93 (96)
T ss_dssp C
T ss_pred c
Confidence 4
No 280
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=3.5e-13 Score=123.83 Aligned_cols=80 Identities=16% Similarity=0.266 Sum_probs=72.1
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCCee--------CC
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD----TQHKHNHKFIEFYDIRAAETALRTLNRSDV--------AG 426 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I--------~G 426 (861)
+...++|||+|||..+++++|+++|++||+|..|++ .+.++|||||+|.+.++|++|++.|||..| .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 345689999999999999999999999999999886 345689999999999999999999999999 57
Q ss_pred cEEEEEeccCCc
Q 002974 427 KQIKLEASRPGG 438 (861)
Q Consensus 427 r~IkVe~Akpk~ 438 (861)
++|+|.|++++.
T Consensus 102 ~~l~v~~a~p~~ 113 (114)
T 1x5o_A 102 EPLLCKFSGPSS 113 (114)
T ss_dssp SCBEEEECCCSC
T ss_pred CceeEEccCCCC
Confidence 889999998763
No 281
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.44 E-value=1.9e-13 Score=130.82 Aligned_cols=82 Identities=20% Similarity=0.387 Sum_probs=73.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEE--------E--EeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcce
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRT--------I--YTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRK 343 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~I~s--------v--kitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~ 343 (861)
..++++|||+|||+++++++|+++|++||.|.. + ..+++++|||||+|.+.++|++|++.|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 457899999999999999999999999998765 2 236899999999999999999999999999999999
Q ss_pred eeeeecCCCCCC
Q 002974 344 LDIHYSIPKDNP 355 (861)
Q Consensus 344 L~V~~a~~k~~~ 355 (861)
|.|.|+.+...+
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999875443
No 282
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.44 E-value=7.9e-14 Score=123.76 Aligned_cols=76 Identities=20% Similarity=0.237 Sum_probs=67.8
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Ak 435 (861)
..++|||+|||..+++++|+++|++||.|..+.+ .++.+|||||+|.+.++|++|++.||+..|.|++|+|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 4579999999999999999999999999875433 45678999999999999999999999999999999999986
Q ss_pred C
Q 002974 436 P 436 (861)
Q Consensus 436 p 436 (861)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 4
No 283
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.44 E-value=9.6e-14 Score=118.12 Aligned_cols=70 Identities=14% Similarity=0.308 Sum_probs=65.4
Q ss_pred ceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 002974 364 TLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (861)
Q Consensus 364 tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~A 434 (861)
+|||+|||.++++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++ |++..+.|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5999999999999999999999999999876 45568999999999999999998 9999999999999875
No 284
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.44 E-value=1.6e-13 Score=120.92 Aligned_cols=76 Identities=14% Similarity=0.317 Sum_probs=71.0
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~ 438 (861)
..++|||+|||+.+++++|+++|++| +|.+|++. +++|||||+|.+.++|++|++.|||..+.|++|+|+++..+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 45789999999999999999999999 99999875 789999999999999999999999999999999999997653
No 285
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.43 E-value=2.7e-13 Score=126.41 Aligned_cols=78 Identities=19% Similarity=0.364 Sum_probs=72.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeec
Q 002974 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (861)
Q Consensus 275 ~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a 349 (861)
.+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|+ .|+|..|.|+.|+|.++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 34799999999999999999999999999999985 5788999999999999999999 79999999999999999
Q ss_pred CCCC
Q 002974 350 IPKD 353 (861)
Q Consensus 350 ~~k~ 353 (861)
.+..
T Consensus 113 ~~~~ 116 (124)
T 2jwn_A 113 RTNM 116 (124)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7643
No 286
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=7.7e-14 Score=130.81 Aligned_cols=79 Identities=10% Similarity=0.186 Sum_probs=70.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEE---E--eCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTI---Y--TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~sv---k--itgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~ 347 (861)
...+.++|||+|||+++++++|+++|++||.|..+ . .+++++|||||+|.+.++|++||+ |++..|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 44567999999999999999999999999987542 2 368899999999999999999999 99999999999999
Q ss_pred ecCCC
Q 002974 348 YSIPK 352 (861)
Q Consensus 348 ~a~~k 352 (861)
++.++
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98653
No 287
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.43 E-value=3.8e-13 Score=133.70 Aligned_cols=81 Identities=22% Similarity=0.303 Sum_probs=72.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-CCCcccEEEEEeCCHHHHHHHHHHcCccccCc--ceeeeeecC
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-ACKHRGFVMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSI 350 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-tgksrGyAFVeF~d~e~A~kALkaLnG~~L~G--r~L~V~~a~ 350 (861)
.....+|||+||++.+++++|+++|++||+|+.|++ +++.+|||||+|.+.++|++|++.|+|..|.| ++|+|.|++
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 444677999999999999999999999999999997 35568899999999999999999999999965 999999999
Q ss_pred CCCC
Q 002974 351 PKDN 354 (861)
Q Consensus 351 ~k~~ 354 (861)
++..
T Consensus 123 ~~~l 126 (164)
T 1sjr_A 123 LTSL 126 (164)
T ss_dssp SSSC
T ss_pred CCcc
Confidence 8754
No 288
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.43 E-value=2.3e-13 Score=130.49 Aligned_cols=80 Identities=25% Similarity=0.359 Sum_probs=72.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccE-EEEEeCCHHHHHHHHHHcCccccCc--ceeeeeecCC
Q 002974 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGF-VMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSIP 351 (861)
Q Consensus 275 ~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGy-AFVeF~d~e~A~kALkaLnG~~L~G--r~L~V~~a~~ 351 (861)
..-.+|||+||++.+|+++|+++|++||+|..|++..+.+|| |||+|.+.++|++|++.|||..|.| +.|+|+|+++
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 445677899999999999999999999999999975566788 9999999999999999999999988 9999999987
Q ss_pred CCC
Q 002974 352 KDN 354 (861)
Q Consensus 352 k~~ 354 (861)
+..
T Consensus 106 ~~l 108 (130)
T 3zzy_A 106 TSL 108 (130)
T ss_dssp SSC
T ss_pred Cce
Confidence 654
No 289
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=1.1e-13 Score=129.34 Aligned_cols=78 Identities=18% Similarity=0.163 Sum_probs=71.0
Q ss_pred cCCcceEEecccCC-CcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCC--CeeCCcEEEEEeccC
Q 002974 360 ANQGTLVVFNLDSS-VSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNR--SDVAGKQIKLEASRP 436 (861)
Q Consensus 360 ~~~~tLfVgNLp~s-vTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG--~~I~Gr~IkVe~Akp 436 (861)
...++|||+|||++ +++++|+++|++||+|.+|++. +.||||||+|.+.++|++|++.|++ ..|.|++|+|.+++.
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM-RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 35679999999998 9999999999999999999975 5799999999999999999998864 569999999999987
Q ss_pred Cc
Q 002974 437 GG 438 (861)
Q Consensus 437 k~ 438 (861)
+.
T Consensus 102 ~~ 103 (112)
T 1x4f_A 102 YK 103 (112)
T ss_dssp CS
T ss_pred cc
Confidence 65
No 290
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=6e-14 Score=122.23 Aligned_cols=76 Identities=21% Similarity=0.324 Sum_probs=69.3
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Ak 435 (861)
..++|||+|||..+++++|+++|++||+|..|++ ++..+|||||+|.+.++|++|++.|||..+.|+.|+|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 4579999999999999999999999999999986 34568999999999999999999999999999999987765
Q ss_pred C
Q 002974 436 P 436 (861)
Q Consensus 436 p 436 (861)
.
T Consensus 84 s 84 (85)
T 1x4e_A 84 S 84 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 291
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.43 E-value=5.7e-14 Score=123.67 Aligned_cols=75 Identities=20% Similarity=0.430 Sum_probs=67.3
Q ss_pred cceEEecccCCCcHHHHHHHhcccCcEEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 002974 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (861)
Q Consensus 363 ~tLfVgNLp~svTeedLrelFskfGeI~sVrit-----gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk 437 (861)
++|||+|||..+++++|+++|++||+|.+|++. ++++|||||+|.+.+ |++|++.|||..+.|++|+|++|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 579999999999999999999999999999873 566899999999999 99999999999999999999999886
Q ss_pred c
Q 002974 438 G 438 (861)
Q Consensus 438 ~ 438 (861)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 5
No 292
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.43 E-value=8.3e-14 Score=131.95 Aligned_cols=80 Identities=21% Similarity=0.366 Sum_probs=72.7
Q ss_pred cccCCcceEEecccCCCcHHHHHHHhcccCcEEE--EEe-----CCCCccEEEEEECCHHHHHHHHHHhCCC----eeCC
Q 002974 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE--IRD-----TQHKHNHKFIEFYDIRAAETALRTLNRS----DVAG 426 (861)
Q Consensus 358 k~~~~~tLfVgNLp~svTeedLrelFskfGeI~s--Vri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~----~I~G 426 (861)
.+...++|||+|||+.+++++|+++|++||.|.. |++ ++++||||||+|.+. +|.+|++.|||. .|.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3456789999999999999999999999999966 765 466799999999999 999999999999 9999
Q ss_pred cEEEEEeccCCc
Q 002974 427 KQIKLEASRPGG 438 (861)
Q Consensus 427 r~IkVe~Akpk~ 438 (861)
++|+|++++++.
T Consensus 98 r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 KTINVEFAKGSK 109 (131)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 999999998865
No 293
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.43 E-value=4.3e-13 Score=126.83 Aligned_cols=76 Identities=25% Similarity=0.426 Sum_probs=69.8
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit-----gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
....++|||+|||..+++++|+++|++||+|+.|++. ++.+|||||+|.+.++|++|++.|||..|.|++|+|++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 4457899999999999999999999999999999873 45689999999999999999999999999999999998
Q ss_pred c
Q 002974 434 S 434 (861)
Q Consensus 434 A 434 (861)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 6
No 294
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=6.9e-13 Score=119.71 Aligned_cols=79 Identities=16% Similarity=0.345 Sum_probs=71.4
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
....++|||+|||..+++++|+++|++||.|+.|++ +++++|||||+|.+.++|++|++ ++..|.|++|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 445689999999999999999999999999999876 35668999999999999999999 57899999999999
Q ss_pred ccCCch
Q 002974 434 SRPGGA 439 (861)
Q Consensus 434 Akpk~~ 439 (861)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 998763
No 295
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.43 E-value=1.2e-13 Score=119.65 Aligned_cols=69 Identities=17% Similarity=0.262 Sum_probs=64.0
Q ss_pred cceEEecccCCC------cHHHHHHHhcccCcEEEEEeC---CCCccEEEEEECCHHHHHHHHHHhCCCeeCCc-EEEE
Q 002974 363 GTLVVFNLDSSV------STEELHQIFGIYGEIREIRDT---QHKHNHKFIEFYDIRAAETALRTLNRSDVAGK-QIKL 431 (861)
Q Consensus 363 ~tLfVgNLp~sv------TeedLrelFskfGeI~sVrit---gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr-~IkV 431 (861)
++|||+|||..+ ++++|+++|++||+|.+|++. ++++|||||+|.+.++|++|++.|||..+.|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 689999999999 779999999999999999863 45689999999999999999999999999999 8876
No 296
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.2e-13 Score=127.68 Aligned_cols=79 Identities=13% Similarity=0.156 Sum_probs=71.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCE-EEEEe----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDI-RTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I-~svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~ 347 (861)
...+.++|||+|||+++++++|+++|++||.| ..|++ +++++|||||+|.+.++|++||+. ++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 44568999999999999999999999999999 66664 577899999999999999999986 9999999999999
Q ss_pred ecCCC
Q 002974 348 YSIPK 352 (861)
Q Consensus 348 ~a~~k 352 (861)
++.++
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98754
No 297
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=3.6e-13 Score=118.95 Aligned_cols=77 Identities=18% Similarity=0.255 Sum_probs=70.7
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Ak 435 (861)
....+|||+|||.++++++|+++|++| .|..|++ .++++|||||+|.+.++|++|++ ||+..|.|+.|+|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 456899999999999999999999999 8988876 45568999999999999999999 99999999999999998
Q ss_pred CCc
Q 002974 436 PGG 438 (861)
Q Consensus 436 pk~ 438 (861)
++.
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 764
No 298
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=3.5e-13 Score=126.48 Aligned_cols=79 Identities=14% Similarity=0.292 Sum_probs=71.4
Q ss_pred CCCCCcEEEE--cCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCcccc-----Ccceee
Q 002974 273 GEHPSRTLFV--RNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL-----RRRKLD 345 (861)
Q Consensus 273 ~~~~srtLfV--gNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L-----~Gr~L~ 345 (861)
...++++||| +||+.++++++|+++|++||.|..|.+. ..||||||+|.+.++|++|++.|||+.+ .|+.|.
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~-~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECC-TTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 3457899999 7799999999999999999999999973 4689999999999999999999999988 689999
Q ss_pred eeecCCC
Q 002974 346 IHYSIPK 352 (861)
Q Consensus 346 V~~a~~k 352 (861)
|.|+...
T Consensus 100 v~~a~~~ 106 (114)
T 2cq2_A 100 LNFVEKV 106 (114)
T ss_dssp EEEESCC
T ss_pred EEecccC
Confidence 9998754
No 299
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.42 E-value=3.2e-13 Score=117.68 Aligned_cols=73 Identities=18% Similarity=0.375 Sum_probs=68.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcC----C-------CEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcc
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQF----G-------DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRR 342 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqf----G-------~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr 342 (861)
.++.++|||+|||+++++++|+++|++| | .|..+++ .+.+|||||+|.+.++|++|+ .|+|..+.|+
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~-~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~ 80 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQ 80 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-CSSSSEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEe-cCCCcEEEEEcCCHHHHHHHH-hcCCCEECCe
Confidence 3568999999999999999999999999 8 9999998 456999999999999999999 9999999999
Q ss_pred eeeeee
Q 002974 343 KLDIHY 348 (861)
Q Consensus 343 ~L~V~~ 348 (861)
.|+|+.
T Consensus 81 ~l~V~r 86 (87)
T 2hzc_A 81 SLKIRR 86 (87)
T ss_dssp ECEEEC
T ss_pred EEEEeC
Confidence 999974
No 300
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.42 E-value=3.1e-13 Score=120.23 Aligned_cols=78 Identities=22% Similarity=0.467 Sum_probs=63.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccc--cCcceeeeeecC
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKP--LRRRKLDIHYSI 350 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~--L~Gr~L~V~~a~ 350 (861)
...+..+|||+|||+++++++|+++|++||.|.+|++...+||||||+|.+.++|++ +++.. +.|+.|.|.++.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 456789999999999999999999999999999999877799999999999999984 34444 569999999998
Q ss_pred CCCC
Q 002974 351 PKDN 354 (861)
Q Consensus 351 ~k~~ 354 (861)
++..
T Consensus 83 ~k~~ 86 (89)
T 3d2w_A 83 PKHN 86 (89)
T ss_dssp ----
T ss_pred CCCc
Confidence 7653
No 301
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.41 E-value=3.1e-13 Score=134.32 Aligned_cols=77 Identities=21% Similarity=0.320 Sum_probs=70.4
Q ss_pred CcceEEecccCCCcHHHHHHHhcccCcEEEEEeC-CCCccEEEEEECCHHHHHHHHHHhCCCeeCC--cEEEEEeccCCc
Q 002974 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-QHKHNHKFIEFYDIRAAETALRTLNRSDVAG--KQIKLEASRPGG 438 (861)
Q Consensus 362 ~~tLfVgNLp~svTeedLrelFskfGeI~sVrit-gksKGfAFVeF~d~eaA~kAL~~LNG~~I~G--r~IkVe~Akpk~ 438 (861)
..+|||+||++.+++++|+++|++||+|++|++. .++++||||+|.+.++|++|++.|||..|.| ++|+|+|++++.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 4579999999999999999999999999999874 3457899999999999999999999999965 999999999874
No 302
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.41 E-value=1e-13 Score=124.93 Aligned_cols=81 Identities=20% Similarity=0.481 Sum_probs=72.9
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeee
Q 002974 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (861)
Q Consensus 272 ~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~ 347 (861)
....+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++ ++..+.|+.|.|.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~ 81 (102)
T 2xs2_A 4 EGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLG 81 (102)
T ss_dssp CCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEE
Confidence 34556899999999999999999999999999999986 56789999999999999999998 9999999999999
Q ss_pred ecCCCCC
Q 002974 348 YSIPKDN 354 (861)
Q Consensus 348 ~a~~k~~ 354 (861)
++.++..
T Consensus 82 ~a~~~~~ 88 (102)
T 2xs2_A 82 PAIRKQN 88 (102)
T ss_dssp EEEECC-
T ss_pred ECCcCcc
Confidence 9986654
No 303
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=3.3e-13 Score=123.11 Aligned_cols=80 Identities=9% Similarity=0.206 Sum_probs=71.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
...+.++|||+|||+++++++|+++|++||.| .|++ +++++|||||+|.+.++|++||+ ++++.|.||.|.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 44568999999999999999999999999955 7764 67889999999999999999995 899999999999999
Q ss_pred cCCCCC
Q 002974 349 SIPKDN 354 (861)
Q Consensus 349 a~~k~~ 354 (861)
+.+...
T Consensus 89 ~~~~~~ 94 (102)
T 1wez_A 89 NSTAGT 94 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 876543
No 304
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=1.5e-13 Score=117.16 Aligned_cols=71 Identities=21% Similarity=0.384 Sum_probs=66.0
Q ss_pred cceEEecccCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 002974 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (861)
Q Consensus 363 ~tLfVgNLp~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~A 434 (861)
++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.++ ..+.|++|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999999999876 35568999999999999999999999 9999999999987
No 305
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.41 E-value=4.7e-13 Score=127.24 Aligned_cols=74 Identities=22% Similarity=0.299 Sum_probs=68.2
Q ss_pred ceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccE-EEEEECCHHHHHHHHHHhCCCeeCC--cEEEEEeccCCc
Q 002974 364 TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNH-KFIEFYDIRAAETALRTLNRSDVAG--KQIKLEASRPGG 438 (861)
Q Consensus 364 tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGf-AFVeF~d~eaA~kAL~~LNG~~I~G--r~IkVe~Akpk~ 438 (861)
.|||+||++.+++++|+++|++||+|++|++..+ .|| |||+|.+.++|.+|++.|||..|.| +.|+|.+++++.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 4789999999999999999999999999988644 586 9999999999999999999999987 699999999875
No 306
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=5.1e-13 Score=121.61 Aligned_cols=78 Identities=22% Similarity=0.290 Sum_probs=71.2
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEE-EEe----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE-IRD----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~s-Vri----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~A 434 (861)
....+|||+|||+.+++++|+++|++||.|.. |++ +++++|||||+|.+.++|++||+. ++..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 45689999999999999999999999999987 765 467789999999999999999997 999999999999998
Q ss_pred cCCc
Q 002974 435 RPGG 438 (861)
Q Consensus 435 kpk~ 438 (861)
.+++
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7665
No 307
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.41 E-value=6e-13 Score=118.34 Aligned_cols=77 Identities=22% Similarity=0.382 Sum_probs=64.1
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCe--eCCcEEEEEeccC
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSD--VAGKQIKLEASRP 436 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~--I~Gr~IkVe~Akp 436 (861)
.....+|||+|||+++|+++|+++|++||+|.+|++..++||||||+|.+.++|++ |++.. +.|++|+|.++.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCC
Confidence 34568999999999999999999999999999999887789999999999999983 56665 4599999999998
Q ss_pred Cch
Q 002974 437 GGA 439 (861)
Q Consensus 437 k~~ 439 (861)
+..
T Consensus 84 k~~ 86 (89)
T 3d2w_A 84 KHN 86 (89)
T ss_dssp ---
T ss_pred CCc
Confidence 753
No 308
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.40 E-value=1e-13 Score=124.68 Aligned_cols=80 Identities=23% Similarity=0.271 Sum_probs=70.9
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEEE----EeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREI----RDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~sV----ritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Ak 435 (861)
....+|||+|||..+++++|+++|++||.|..+ ..+++++|||||+|.+.++|++|++ ||+..|.|++|+|.+++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 356799999999999999999999999987651 1246789999999999999999999 99999999999999999
Q ss_pred CCchh
Q 002974 436 PGGAR 440 (861)
Q Consensus 436 pk~~r 440 (861)
++..+
T Consensus 94 ~~~~~ 98 (101)
T 1fj7_A 94 GRDGT 98 (101)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 87643
No 309
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=6.5e-13 Score=120.53 Aligned_cols=76 Identities=17% Similarity=0.321 Sum_probs=67.7
Q ss_pred CCCcE-EEEcCCCCCCcHHH----HHHHhhcC-CCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 275 HPSRT-LFVRNINSNVEDSE----LKALFEQF-GDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 275 ~~srt-LfVgNLP~~vTEed----L~elFsqf-G~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
.|+.| |||+|||.++++++ |+++|++| |+|..| ++ |+|||+|.+.++|++|++.|+|..+.||+|+|.|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 45666 99999999999988 55899999 599998 33 9999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 002974 349 SIPKDNP 355 (861)
Q Consensus 349 a~~k~~~ 355 (861)
++.+.+-
T Consensus 81 A~~~sd~ 87 (96)
T 2diu_A 81 TPKNREL 87 (96)
T ss_dssp SCCSCCC
T ss_pred cCCCcce
Confidence 9876543
No 310
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.11 E-value=2.2e-14 Score=132.63 Aligned_cols=83 Identities=22% Similarity=0.370 Sum_probs=75.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEE--------EEe-----CCCcccEEEEEeCCHHHHHHHHHHcCcccc
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRT--------IYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPL 339 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~s--------vki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L 339 (861)
...+.++|||+|||.++++++|+++|++||.|.. |++ +++++|||||+|.+.++|++|++.|++..+
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 3567899999999999999999999999999988 653 467899999999999999999999999999
Q ss_pred CcceeeeeecCCCCCC
Q 002974 340 RRRKLDIHYSIPKDNP 355 (861)
Q Consensus 340 ~Gr~L~V~~a~~k~~~ 355 (861)
.|++|+|.++.++...
T Consensus 83 ~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 83 SGNPIKVSFATRRADF 98 (116)
Confidence 9999999999877554
No 311
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=2.2e-13 Score=126.06 Aligned_cols=82 Identities=11% Similarity=0.140 Sum_probs=72.8
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcE-EEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEI-REIRD----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI-~sVri----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
....++|||+|||+++++++|+++|++||.| ..|++ +++.+|||||+|.+.++|++||+. |+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 3456899999999999999999999999999 67776 356799999999999999999996 99999999999999
Q ss_pred ccCCchhh
Q 002974 434 SRPGGARR 441 (861)
Q Consensus 434 Akpk~~rr 441 (861)
+.++..++
T Consensus 91 a~~~~~~~ 98 (114)
T 2cpy_A 91 VTLEDMRE 98 (114)
T ss_dssp ECHHHHHH
T ss_pred CCHHHHHH
Confidence 98766443
No 312
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.40 E-value=3.5e-13 Score=125.77 Aligned_cols=77 Identities=8% Similarity=0.114 Sum_probs=70.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCC---EEEEEe----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeee
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGD---IRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~---I~svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V 346 (861)
....++|||+|||+++++++|+++|++||. |..|++ .++++|||||+|.+.++|++|++ ++++.|.||.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 456899999999999999999999999998 777764 47789999999999999999998 9999999999999
Q ss_pred eecCC
Q 002974 347 HYSIP 351 (861)
Q Consensus 347 ~~a~~ 351 (861)
.++..
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98854
No 313
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.40 E-value=1.8e-13 Score=131.89 Aligned_cols=78 Identities=14% Similarity=0.134 Sum_probs=70.3
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCc---EEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGE---IREIRD----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGe---I~sVri----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe 432 (861)
....+|||+|||+++|+++|+++|++||. |.+|++ .++++|||||+|.+.++|++||+ ||+..|.|+.|+|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 45678999999999999999999999999 777665 35678999999999999999999 99999999999999
Q ss_pred eccCCc
Q 002974 433 ASRPGG 438 (861)
Q Consensus 433 ~Akpk~ 438 (861)
++.+++
T Consensus 121 ~a~~~e 126 (136)
T 2hgl_A 121 KSHRTE 126 (136)
T ss_dssp ECCHHH
T ss_pred ECChHH
Confidence 997654
No 314
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=2.9e-13 Score=118.95 Aligned_cols=79 Identities=22% Similarity=0.449 Sum_probs=68.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCCCC
Q 002974 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 354 (861)
Q Consensus 275 ~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k~~ 354 (861)
.++++|||+|||.++++++|+++|++||.|..|++...++|||||+|.+.++|++|+. ....+.|++|+|.++.++..
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCCCCC
Confidence 4579999999999999999999999999999999877789999999999999986543 23456899999999988765
Q ss_pred C
Q 002974 355 P 355 (861)
Q Consensus 355 ~ 355 (861)
.
T Consensus 81 ~ 81 (88)
T 1wf0_A 81 S 81 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 315
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.39 E-value=1.7e-13 Score=116.41 Aligned_cols=70 Identities=20% Similarity=0.476 Sum_probs=65.2
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeec
Q 002974 279 TLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (861)
Q Consensus 279 tLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a 349 (861)
+|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++ +++..+.|+.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 6999999999999999999999999999985 46789999999999999999998 5899999999999875
No 316
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.39 E-value=6.2e-13 Score=123.45 Aligned_cols=76 Identities=18% Similarity=0.264 Sum_probs=66.9
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcE-----EEEEecc
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQ-----IKLEASR 435 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~-----IkVe~Ak 435 (861)
...+|||+|||+++++++|+++|++||+|+.|.+... |||||+|.+.++|++||+.||+..|.|++ |+|..+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 4579999999999999999999999999999998644 99999999999999999999999999998 7887777
Q ss_pred CCc
Q 002974 436 PGG 438 (861)
Q Consensus 436 pk~ 438 (861)
++.
T Consensus 93 ~~~ 95 (115)
T 3beg_B 93 PRS 95 (115)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 317
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.39 E-value=7.1e-13 Score=126.90 Aligned_cols=81 Identities=25% Similarity=0.351 Sum_probs=72.1
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEE--------E--EeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE--------I--RDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQI 429 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~s--------V--ritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~I 429 (861)
...++|||+|||+.+++++|+++|++||.|.. | ..+++.+|||||+|.+.++|.+|++.|||..|.|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 34679999999999999999999999998765 3 2367889999999999999999999999999999999
Q ss_pred EEEeccCCchh
Q 002974 430 KLEASRPGGAR 440 (861)
Q Consensus 430 kVe~Akpk~~r 440 (861)
+|.++++...+
T Consensus 123 ~V~~a~~~~~~ 133 (143)
T 3egn_A 123 VVQFARSARPK 133 (143)
T ss_dssp EEEECCCSCC-
T ss_pred EEEECCCCCCc
Confidence 99999876544
No 318
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=7.4e-13 Score=117.93 Aligned_cols=77 Identities=16% Similarity=0.307 Sum_probs=68.0
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~ 438 (861)
..++|||+|||..+++++|+++|++||.|.+|........||||+|.+.++|++|++ ||+..|.|+.|+|+++.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 457999999999999999999999999999984432222299999999999999999 99999999999999987765
No 319
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.38 E-value=5.9e-13 Score=123.61 Aligned_cols=77 Identities=14% Similarity=0.235 Sum_probs=65.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcce-----eeeee
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRK-----LDIHY 348 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~-----L~V~~ 348 (861)
....++|||+|||+++++++|+++|++||+|..|++... |||||+|.+.++|++||+.|||+.|.|++ |+|..
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~ 90 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 90 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEecc
Confidence 356799999999999999999999999999999998433 99999999999999999999999999999 55555
Q ss_pred cCCC
Q 002974 349 SIPK 352 (861)
Q Consensus 349 a~~k 352 (861)
+.++
T Consensus 91 ~~~~ 94 (115)
T 3beg_B 91 DGPR 94 (115)
T ss_dssp CC--
T ss_pred CCCC
Confidence 5443
No 320
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.38 E-value=3.2e-13 Score=130.18 Aligned_cols=78 Identities=8% Similarity=0.089 Sum_probs=70.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCC---EEEEEe----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGD---IRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~---I~svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~ 345 (861)
.....++|||+|||+++|+++|+++|++||. |..|++ .++++|||||+|.+.++|++|++ |+++.|.||.|+
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 3456899999999999999999999999998 666664 47889999999999999999999 999999999999
Q ss_pred eeecCC
Q 002974 346 IHYSIP 351 (861)
Q Consensus 346 V~~a~~ 351 (861)
|.++.+
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 998853
No 321
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.38 E-value=5.1e-13 Score=138.96 Aligned_cols=76 Identities=17% Similarity=0.262 Sum_probs=70.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCC--CEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 276 PSRTLFVRNINSNVEDSELKALFEQFG--DIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 276 ~srtLfVgNLP~~vTEedL~elFsqfG--~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
..++|||+|||+++|+++|+++|++|| .|..|++ ++++||||||+|.+.++|++||+.|+++.|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 578999999999999999999999999 9999985 678999999999999999999999999999999999999
Q ss_pred cCC
Q 002974 349 SIP 351 (861)
Q Consensus 349 a~~ 351 (861)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 322
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.38 E-value=3.2e-13 Score=126.10 Aligned_cols=78 Identities=14% Similarity=0.155 Sum_probs=70.2
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCc---EEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGE---IREIRD----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGe---I~sVri----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe 432 (861)
....+|||+|||+++|+++|+++|+.||. |..|++ .++++|||||+|.+.++|++||+ ||+..|.|+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 45678999999999999999999999998 777765 35678999999999999999999 99999999999999
Q ss_pred eccCCc
Q 002974 433 ASRPGG 438 (861)
Q Consensus 433 ~Akpk~ 438 (861)
++.+++
T Consensus 94 ~a~~~~ 99 (118)
T 2db1_A 94 KSHRTE 99 (118)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997554
No 323
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.37 E-value=2.8e-13 Score=123.96 Aligned_cols=79 Identities=10% Similarity=0.053 Sum_probs=71.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCC---EEEEEe----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGD---IRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~---I~svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~ 345 (861)
.....++|||+|||+++++++|+++|++||. |..|++ .++++|||||+|.+.++|++|++ +++..+.||.|+
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 3456899999999999999999999999998 788875 36789999999999999999998 999999999999
Q ss_pred eeecCCC
Q 002974 346 IHYSIPK 352 (861)
Q Consensus 346 V~~a~~k 352 (861)
|.++.++
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9998643
No 324
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.37 E-value=9.1e-13 Score=131.91 Aligned_cols=80 Identities=25% Similarity=0.446 Sum_probs=74.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
...+.++|||+|||+.+++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|+.|+|.|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4456899999999999999999999999999999986 367899999999999999999999999999999999999
Q ss_pred cCCC
Q 002974 349 SIPK 352 (861)
Q Consensus 349 a~~k 352 (861)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 9754
No 325
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.8e-13 Score=128.30 Aligned_cols=79 Identities=11% Similarity=0.140 Sum_probs=70.3
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEEE-E----eCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREI-R----DTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~sV-r----itgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~A 434 (861)
....+|||+|||+.+++++|+++|++||.|..+ . .+++.+|||||+|.+.++|++||+ ||+..|.|+.|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 346799999999999999999999999998652 2 256679999999999999999999 9999999999999999
Q ss_pred cCCch
Q 002974 435 RPGGA 439 (861)
Q Consensus 435 kpk~~ 439 (861)
.++..
T Consensus 102 ~~~~~ 106 (124)
T 1wel_A 102 TKKGM 106 (124)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 87653
No 326
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=8.6e-13 Score=123.82 Aligned_cols=78 Identities=19% Similarity=0.193 Sum_probs=70.3
Q ss_pred cCCcceEE--ecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCee-----CCcEEEEE
Q 002974 360 ANQGTLVV--FNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDV-----AGKQIKLE 432 (861)
Q Consensus 360 ~~~~tLfV--gNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I-----~Gr~IkVe 432 (861)
...++||| +||++.+++++|+++|++||+|.+|.+. ..||||||+|.+.++|++|++.|||+++ .|++|.|.
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~-~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~ 101 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 101 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECC-TTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEE
Confidence 34678999 6699999999999999999999999875 4689999999999999999999999998 68999999
Q ss_pred eccCCc
Q 002974 433 ASRPGG 438 (861)
Q Consensus 433 ~Akpk~ 438 (861)
+++...
T Consensus 102 ~a~~~p 107 (114)
T 2cq2_A 102 FVEKVQ 107 (114)
T ss_dssp EESCCC
T ss_pred ecccCc
Confidence 987543
No 327
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.37 E-value=1.9e-12 Score=123.10 Aligned_cols=76 Identities=20% Similarity=0.273 Sum_probs=68.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccE-EEEEeCCHHHHHHHHHHcCccccCc--ceeeeeecCCCCC
Q 002974 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGF-VMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSIPKDN 354 (861)
Q Consensus 278 rtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGy-AFVeF~d~e~A~kALkaLnG~~L~G--r~L~V~~a~~k~~ 354 (861)
..|||+||++.+++++|+++|++||.|..|++..+ .|| |||+|.+.++|++|++.|||..|.| +.|+|.|++++..
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRL 104 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcc
Confidence 44679999999999999999999999999987433 486 9999999999999999999999987 6999999987754
No 328
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.37 E-value=9.3e-13 Score=123.91 Aligned_cols=79 Identities=18% Similarity=0.326 Sum_probs=72.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCC
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k 352 (861)
...+.++|||+|+ ++++++|+++|++||.|..|++ .+++|||||+|.+.++|++|++.|+|..+.|+.|+|.|+.++
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i-~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEE-eCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 3457899999996 6999999999999999999998 588999999999999999999999999999999999999876
Q ss_pred CC
Q 002974 353 DN 354 (861)
Q Consensus 353 ~~ 354 (861)
..
T Consensus 112 ~~ 113 (121)
T 2bz2_A 112 PM 113 (121)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 329
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.36 E-value=2.3e-13 Score=131.61 Aligned_cols=121 Identities=10% Similarity=0.050 Sum_probs=69.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCCCCCCCCcccCCcceEEecccCCCcHHHHHHHhcccCcEEEEE
Q 002974 314 RGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIR 393 (861)
Q Consensus 314 rGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~k~~~~~k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVr 393 (861)
+|+|+.+|..++.+..|+..+... ..|....-.... ...........+|||+|||+++|+++|+++|++|| |++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~--~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~ 76 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGD--SEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVH 76 (139)
T ss_dssp -----------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEE
T ss_pred CCcccccccCccccchhcccchhc-cCCCCCCCCCCC--cccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEE
Confidence 367888888888877777654432 222222111111 01112234567999999999999999999999999 66887
Q ss_pred eC----CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCch
Q 002974 394 DT----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (861)
Q Consensus 394 it----gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~~ 439 (861)
+. ++++|||||+|.+.++|++|| .+|+..|.|+.|+|.++.++..
T Consensus 77 i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 77 IEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp CCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred EEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 63 567899999999999999999 6999999999999999987653
No 330
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.04 E-value=6.7e-14 Score=129.41 Aligned_cols=80 Identities=21% Similarity=0.311 Sum_probs=72.6
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEE--------EEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCC
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE--------IRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAG 426 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~s--------Vri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~G 426 (861)
...++|||+|||..+++++|+++|++||.|.. |++ +++.+|||||+|.+.++|++|++.||+..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45689999999999999999999999999988 654 34568999999999999999999999999999
Q ss_pred cEEEEEeccCCch
Q 002974 427 KQIKLEASRPGGA 439 (861)
Q Consensus 427 r~IkVe~Akpk~~ 439 (861)
++|+|++++++..
T Consensus 85 ~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 85 NPIKVSFATRRAD 97 (116)
Confidence 9999999988753
No 331
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=1.1e-12 Score=121.72 Aligned_cols=76 Identities=7% Similarity=0.177 Sum_probs=68.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeec
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a 349 (861)
....++|||+|||+++++++|+++|++| .|..|++ .++++|||||+|.+.++|++|+ .+++..|.||.|.|..+
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 3456899999999999999999999999 8888885 4678999999999999999999 69999999999999877
Q ss_pred CC
Q 002974 350 IP 351 (861)
Q Consensus 350 ~~ 351 (861)
.+
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 53
No 332
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=9.5e-13 Score=120.06 Aligned_cols=77 Identities=10% Similarity=0.174 Sum_probs=68.8
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Ak 435 (861)
....+|||+|||+++++++|+++|++||.| +|++ +++++|||||+|.+.++|++||+ +|+..|.|+.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 456799999999999999999999999955 7765 45678999999999999999995 89999999999999988
Q ss_pred CCc
Q 002974 436 PGG 438 (861)
Q Consensus 436 pk~ 438 (861)
+..
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 333
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.35 E-value=3.8e-13 Score=123.02 Aligned_cols=79 Identities=13% Similarity=0.075 Sum_probs=71.2
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCc---EEEEEeC----CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGE---IREIRDT----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKL 431 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGe---I~sVrit----gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkV 431 (861)
.....+|||+|||+++++++|+++|+.||. |..|++. ++++|||||+|.+.++|++||+ +|+..|.|+.|+|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 345678999999999999999999999998 8888763 5678999999999999999999 9999999999999
Q ss_pred EeccCCc
Q 002974 432 EASRPGG 438 (861)
Q Consensus 432 e~Akpk~ 438 (861)
.++.++.
T Consensus 87 ~~a~~~~ 93 (107)
T 2lmi_A 87 YEINNED 93 (107)
T ss_dssp EECCHHH
T ss_pred EECCHHH
Confidence 9998765
No 334
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.35 E-value=5.4e-13 Score=138.77 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=71.6
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccC--cEEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYG--EIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfG--eI~sVri-----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
..++|||+||++.+|+++|+++|++|| +|++|++ ++++||||||+|.+.++|++||+.||+..|.|++|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 356899999999999999999999999 9999886 566799999999999999999999999999999999999
Q ss_pred ccCCc
Q 002974 434 SRPGG 438 (861)
Q Consensus 434 Akpk~ 438 (861)
+++..
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 98765
No 335
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=5.5e-13 Score=117.16 Aligned_cols=77 Identities=16% Similarity=0.301 Sum_probs=67.0
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCch
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~~ 439 (861)
..++|||+|||..+++++|+++|++||+|.+|++...++|||||+|.+.++|++|+. ....+.|++|+|.+++++..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCCCCC
Confidence 357999999999999999999999999999999877789999999999999986533 13355899999999998764
No 336
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.34 E-value=2.8e-12 Score=129.93 Aligned_cols=115 Identities=13% Similarity=0.149 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHc--CccccCcceeeeeecCCCCCCCC-----cccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC
Q 002974 323 DIRAARNAMKAL--QNKPLRRRKLDIHYSIPKDNPSE-----KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT 395 (861)
Q Consensus 323 d~e~A~kALkaL--nG~~L~Gr~L~V~~a~~k~~~~~-----k~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit 395 (861)
+.+.+..|++.. ....+.+...+|.....+..+.. .....++|||+|||..+++++|+++|++||.|..|++.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 667888888877 55566666666665532222211 22346899999999999999999999999999999863
Q ss_pred ----CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 002974 396 ----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (861)
Q Consensus 396 ----gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~ 438 (861)
+..+|||||+|.+.++|++|+..+ +..+.|++|+|.+++.-.
T Consensus 143 ~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y~ 188 (193)
T 2voo_A 143 RTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDYF 188 (193)
T ss_dssp ECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC-
T ss_pred ECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHHH
Confidence 567899999999999999999865 459999999999987643
No 337
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=1.9e-12 Score=117.48 Aligned_cols=73 Identities=22% Similarity=0.331 Sum_probs=65.9
Q ss_pred CCcceEEecccCCCcHHH----HHHHhccc-CcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 002974 361 NQGTLVVFNLDSSVSTEE----LHQIFGIY-GEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeed----LrelFskf-GeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Ak 435 (861)
..+.|||+|||+.+++++ |+++|++| |+|.+| ++ |+|||+|.+.++|.+|++.|+|..+.||+|+|.+|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~ 82 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTP 82 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSC
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecC
Confidence 344599999999999988 55899999 599998 33 999999999999999999999999999999999999
Q ss_pred CCc
Q 002974 436 PGG 438 (861)
Q Consensus 436 pk~ 438 (861)
.+.
T Consensus 83 ~~s 85 (96)
T 2diu_A 83 KNR 85 (96)
T ss_dssp CSC
T ss_pred CCc
Confidence 875
No 338
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.34 E-value=4.2e-13 Score=113.93 Aligned_cols=70 Identities=17% Similarity=0.348 Sum_probs=64.7
Q ss_pred ceEEecccCCCcHHHHHHHhcccCcEEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 002974 364 TLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (861)
Q Consensus 364 tLfVgNLp~svTeedLrelFskfGeI~sVrit-----gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~A 434 (861)
+|||+|||.++++++|+++|++||+|..|++. +.++|||||+|.+.++|++|++ +++..+.|++|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 69999999999999999999999999998763 5568999999999999999999 5899999999999875
No 339
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.33 E-value=2.2e-12 Score=135.56 Aligned_cols=103 Identities=17% Similarity=0.185 Sum_probs=78.3
Q ss_pred ccccCcceeeeeecCCCCCCCCcccCCcceEEecccCCC---------cHHHHHHHhcccCcEEEEEeCCCCccEEEEEE
Q 002974 336 NKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSV---------STEELHQIFGIYGEIREIRDTQHKHNHKFIEF 406 (861)
Q Consensus 336 G~~L~Gr~L~V~~a~~k~~~~~k~~~~~tLfVgNLp~sv---------TeedLrelFskfGeI~sVritgksKGfAFVeF 406 (861)
...+.|+.....+..........+...++|||+||+..+ ++++|+++|++||+|++|++. ..||||||+|
T Consensus 108 ~~D~fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~-~~kG~AFV~F 186 (240)
T 3u1l_A 108 VLDCFGREKFADYREDMGGIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV-ESKNCGFVKF 186 (240)
T ss_dssp SBCTTSSBCGGGTC---------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEE
T ss_pred CcccccchhcccchhcccCcCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE-CCCCEEEEEe
Confidence 344556655444443322222234567899999999998 799999999999999999976 4799999999
Q ss_pred CCHHHHHHHHHHhCCCee------------CCcEEEEEeccCCch
Q 002974 407 YDIRAAETALRTLNRSDV------------AGKQIKLEASRPGGA 439 (861)
Q Consensus 407 ~d~eaA~kAL~~LNG~~I------------~Gr~IkVe~Akpk~~ 439 (861)
.+.++|+.|+++|+|..| .|+.|.|.||+.+..
T Consensus 187 ~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 187 KYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp SSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred CCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCC
Confidence 999999999999999999 899999999987653
No 340
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.33 E-value=2.4e-12 Score=112.13 Aligned_cols=71 Identities=18% Similarity=0.363 Sum_probs=66.2
Q ss_pred CCcceEEecccCCCcHHHHHHHhccc----C-------cEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIY----G-------EIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQI 429 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskf----G-------eI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~I 429 (861)
..++|||+|||..+++++|+++|++| | .|.++++. ..+|||||+|.+.++|++|+ .|||..+.|++|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~-~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC-SSSSEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec-CCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 46799999999999999999999999 8 99999975 46999999999999999999 999999999999
Q ss_pred EEEe
Q 002974 430 KLEA 433 (861)
Q Consensus 430 kVe~ 433 (861)
+|+.
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9974
No 341
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.33 E-value=7.3e-13 Score=128.15 Aligned_cols=80 Identities=9% Similarity=0.190 Sum_probs=70.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
.....++|||+|||+++|+++|+++|++|| |..|++ +++++|||||+|.+.++|++|| .+++..|.||.|.|.+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 445678999999999999999999999999 668875 4678999999999999999999 7999999999999999
Q ss_pred cCCCCC
Q 002974 349 SIPKDN 354 (861)
Q Consensus 349 a~~k~~ 354 (861)
+.++..
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 876543
No 342
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.33 E-value=1.9e-12 Score=121.79 Aligned_cols=78 Identities=22% Similarity=0.361 Sum_probs=71.2
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCch
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~~ 439 (861)
...++|||+|| ++++++|+++|++||+|.+|++. ..+|||||+|.+.++|++|++.|||..|.|++|+|.+++++..
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 45689999996 69999999999999999999874 7899999999999999999999999999999999999998764
Q ss_pred h
Q 002974 440 R 440 (861)
Q Consensus 440 r 440 (861)
.
T Consensus 114 ~ 114 (121)
T 2bz2_A 114 L 114 (121)
T ss_dssp -
T ss_pred C
Confidence 3
No 343
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.32 E-value=1.7e-12 Score=123.69 Aligned_cols=77 Identities=14% Similarity=0.207 Sum_probs=68.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEE--EEEe----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeee
Q 002974 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIR--TIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~--svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V 346 (861)
.....++|||+|||+++++++|+++|++| .|. .|++ .++++|||||+|.+.++|++|++ +++..|.||.|.|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 44568899999999999999999999999 676 7875 47789999999999999999998 5789999999999
Q ss_pred eecCC
Q 002974 347 HYSIP 351 (861)
Q Consensus 347 ~~a~~ 351 (861)
.++.+
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88854
No 344
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.32 E-value=1e-12 Score=118.40 Aligned_cols=78 Identities=21% Similarity=0.380 Sum_probs=71.0
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVri----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~A 434 (861)
....++|||+|||..+++++|+++|++||.|..|++ +++.+|||||+|.+.++|++|++ ++..+.|++|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 345689999999999999999999999999999886 34578999999999999999999 999999999999999
Q ss_pred cCCc
Q 002974 435 RPGG 438 (861)
Q Consensus 435 kpk~ 438 (861)
.++.
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 8765
No 345
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=2.2e-12 Score=119.67 Aligned_cols=74 Identities=11% Similarity=0.160 Sum_probs=67.5
Q ss_pred CcceEEecccCCCcHHHHHHHhcccCcEEEEEeC----CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 002974 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (861)
Q Consensus 362 ~~tLfVgNLp~svTeedLrelFskfGeI~sVrit----gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk 437 (861)
..+|||+|||+++++++|+++|+.| .|..|++. ++++|||||+|.+.++|++|| .+|+..|.||.|+|..+.++
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 4689999999999999999999999 88888873 567899999999999999999 59999999999999888654
No 346
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.31 E-value=2.1e-12 Score=135.59 Aligned_cols=81 Identities=21% Similarity=0.380 Sum_probs=71.6
Q ss_pred CCCCcEEEEcCCCCCC---------cHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCcccc-----
Q 002974 274 EHPSRTLFVRNINSNV---------EDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL----- 339 (861)
Q Consensus 274 ~~~srtLfVgNLP~~v---------TEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L----- 339 (861)
....++|||+||+..+ +|++|+++|++||+|..|++ ..+||||||+|.+.++|+.|+++|+|+.|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v-~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRY-VESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEE-EGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEE-ECCCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 4568999999999998 79999999999999999997 46799999999999999999999999999
Q ss_pred -------CcceeeeeecCCCCCC
Q 002974 340 -------RRRKLDIHYSIPKDNP 355 (861)
Q Consensus 340 -------~Gr~L~V~~a~~k~~~ 355 (861)
.|+.|.|.|+..+.++
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp TTGGGGGGSCCCEEEECC-----
T ss_pred ccccccCCCCEEEEEEccCCCCH
Confidence 8999999999876554
No 347
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=4e-12 Score=117.57 Aligned_cols=73 Identities=16% Similarity=0.318 Sum_probs=61.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----C---CCcccEEEEEeCCHHHHHHHHHHcCccccCcceee
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----A---CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----t---gksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~ 345 (861)
....++|||+|||+++++++|+++|++||.|. +.+ + ++++|||||+|.+.++|++|++.|++ +.|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEE
Confidence 35689999999999999999999999999999 653 2 58899999999999999999999843 5666666
Q ss_pred eeec
Q 002974 346 IHYS 349 (861)
Q Consensus 346 V~~a 349 (861)
+..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 6544
No 348
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=1.1e-11 Score=114.46 Aligned_cols=82 Identities=16% Similarity=0.292 Sum_probs=72.2
Q ss_pred CCCCCcEEEEcCCCCCCc-----------HHHHHHHhhcCCCEEEEEe-CCCcccEEEEEeCCHHHHHHHHHHcCccccC
Q 002974 273 GEHPSRTLFVRNINSNVE-----------DSELKALFEQFGDIRTIYT-ACKHRGFVMISYYDIRAARNAMKALQNKPLR 340 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~vT-----------EedL~elFsqfG~I~svki-tgksrGyAFVeF~d~e~A~kALkaLnG~~L~ 340 (861)
...++++|+|+||....+ +++|+++|++||.|..|.+ ...++|||||+|.+.++|++|++.|+|..+.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 556799999999954433 6899999999999999986 4568999999999999999999999999999
Q ss_pred cceeeeeecCCCCC
Q 002974 341 RRKLDIHYSIPKDN 354 (861)
Q Consensus 341 Gr~L~V~~a~~k~~ 354 (861)
|++|+|.++.++..
T Consensus 91 gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 91 GRQITAQAWDGTTD 104 (112)
T ss_dssp TEECEEEECCSCCC
T ss_pred CcEEEEEEeCCCCC
Confidence 99999999987654
No 349
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=1.4e-12 Score=123.65 Aligned_cols=76 Identities=18% Similarity=0.231 Sum_probs=67.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCE----EEEEe----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeee
Q 002974 275 HPSRTLFVRNINSNVEDSELKALFEQFGDI----RTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (861)
Q Consensus 275 ~~srtLfVgNLP~~vTEedL~elFsqfG~I----~svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V 346 (861)
.+.++|||+|||+++|+++|+++|++||.| ..|++ +++++|||||+|.+.++|++|++. +++.|.||.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 457899999999999999999999999975 34442 678999999999999999999985 999999999999
Q ss_pred eecCC
Q 002974 347 HYSIP 351 (861)
Q Consensus 347 ~~a~~ 351 (861)
..+.+
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 87753
No 350
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.29 E-value=4.1e-12 Score=127.19 Aligned_cols=79 Identities=16% Similarity=0.277 Sum_probs=72.9
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC----CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit----gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Ak 435 (861)
...++|||+|||..+++++|+++|++||+|+.|.+. +.++|||||+|.+.++|++|++.||+..|.|++|+|+++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 346799999999999999999999999999999874 5578999999999999999999999999999999999998
Q ss_pred CCc
Q 002974 436 PGG 438 (861)
Q Consensus 436 pk~ 438 (861)
...
T Consensus 166 ~~~ 168 (177)
T 2f3j_A 166 SQI 168 (177)
T ss_dssp SGG
T ss_pred CCC
Confidence 754
No 351
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.28 E-value=5.9e-12 Score=142.72 Aligned_cols=81 Identities=27% Similarity=0.434 Sum_probs=75.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeee
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~ 348 (861)
..+.++|||+|||..+|+++|+++|++||.|..|++ +++++|||||+|.+.++|++||+.|||+.|.|+.|.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 346789999999999999999999999999999986 577899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 002974 349 SIPKDN 354 (861)
Q Consensus 349 a~~k~~ 354 (861)
+.++..
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 987543
No 352
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=1.5e-12 Score=123.48 Aligned_cols=80 Identities=23% Similarity=0.222 Sum_probs=69.3
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcE----EEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEI----REIRD----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI----~sVri----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe 432 (861)
...+|||+|||+++|+++|+++|++||.| ..|++ +++++|||||+|.+.++|++||+. |+..|.||.|+|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 45789999999999999999999999975 45554 466789999999999999999995 9999999999999
Q ss_pred eccCCchhh
Q 002974 433 ASRPGGARR 441 (861)
Q Consensus 433 ~Akpk~~rr 441 (861)
.+.+++.++
T Consensus 101 ~a~~~e~~~ 109 (123)
T 2dha_A 101 RSTAAEVQQ 109 (123)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHH
Confidence 987655333
No 353
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=1.1e-11 Score=114.63 Aligned_cols=75 Identities=13% Similarity=0.155 Sum_probs=63.9
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEEEeC--------CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT--------QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sVrit--------gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe 432 (861)
..++|||+|||+++++++|+++|++||+|. +.+. ++++|||||+|.+.++|++||+.|+ .++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 467999999999999999999999999999 6542 4679999999999999999999984 4777777777
Q ss_pred eccCCc
Q 002974 433 ASRPGG 438 (861)
Q Consensus 433 ~Akpk~ 438 (861)
.+.+..
T Consensus 84 ~~~~~~ 89 (114)
T 2dnl_A 84 SSPTIK 89 (114)
T ss_dssp CCSSSC
T ss_pred cCCCcC
Confidence 665443
No 354
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.25 E-value=4.6e-12 Score=120.66 Aligned_cols=77 Identities=25% Similarity=0.275 Sum_probs=67.5
Q ss_pred cCCcceEEecccCCCcHHHHHHHhcccCcEE--EEEe----CCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 002974 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIR--EIRD----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (861)
Q Consensus 360 ~~~~tLfVgNLp~svTeedLrelFskfGeI~--sVri----tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~ 433 (861)
....+|||+|||+++|+++|+++|++| .|+ .|++ .++++|||||+|.+.++|++||+ +++..|.||.|+|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 346789999999999999999999999 566 7876 35678999999999999999999 578999999999999
Q ss_pred ccCCc
Q 002974 434 SRPGG 438 (861)
Q Consensus 434 Akpk~ 438 (861)
+.+++
T Consensus 118 a~~~e 122 (126)
T 2hgm_A 118 SSQEE 122 (126)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 86543
No 355
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.23 E-value=2.8e-11 Score=111.37 Aligned_cols=78 Identities=14% Similarity=0.241 Sum_probs=68.6
Q ss_pred CCCCcEEEEcCCCC-----CCcHHHHHHHhhcCCCEEEEEe------CCCcccEEEEEeCCHHHHHHHHHHcCccccCcc
Q 002974 274 EHPSRTLFVRNINS-----NVEDSELKALFEQFGDIRTIYT------ACKHRGFVMISYYDIRAARNAMKALQNKPLRRR 342 (861)
Q Consensus 274 ~~~srtLfVgNLP~-----~vTEedL~elFsqfG~I~svki------tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr 342 (861)
..++++|+|+||.. +-++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|||..+.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35789999999963 2368999999999999999985 146799999999999999999999999999999
Q ss_pred eeeeeecCC
Q 002974 343 KLDIHYSIP 351 (861)
Q Consensus 343 ~L~V~~a~~ 351 (861)
.|.|.++.+
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999854
No 356
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=4.1e-11 Score=110.51 Aligned_cols=80 Identities=20% Similarity=0.282 Sum_probs=69.6
Q ss_pred ccCCcceEEecccCCCc-----------HHHHHHHhcccCcEEEEEe-CCCCccEEEEEECCHHHHHHHHHHhCCCeeCC
Q 002974 359 DANQGTLVVFNLDSSVS-----------TEELHQIFGIYGEIREIRD-TQHKHNHKFIEFYDIRAAETALRTLNRSDVAG 426 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svT-----------eedLrelFskfGeI~sVri-tgksKGfAFVeF~d~eaA~kAL~~LNG~~I~G 426 (861)
....++|+|.||....+ +++|+++|++||+|.+|.+ ...++|||||+|.+.++|++|++.|||..|.|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 44578999999944332 5899999999999999876 34578999999999999999999999999999
Q ss_pred cEEEEEeccCCc
Q 002974 427 KQIKLEASRPGG 438 (861)
Q Consensus 427 r~IkVe~Akpk~ 438 (861)
++|+|.++.++.
T Consensus 92 r~l~v~~a~~~~ 103 (112)
T 2dit_A 92 RQITAQAWDGTT 103 (112)
T ss_dssp EECEEEECCSCC
T ss_pred cEEEEEEeCCCC
Confidence 999999998865
No 357
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.21 E-value=4.1e-11 Score=110.34 Aligned_cols=77 Identities=17% Similarity=0.158 Sum_probs=67.3
Q ss_pred cCCcceEEecccC-----CCcHHHHHHHhcccCcEEEEEeC------CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcE
Q 002974 360 ANQGTLVVFNLDS-----SVSTEELHQIFGIYGEIREIRDT------QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQ 428 (861)
Q Consensus 360 ~~~~tLfVgNLp~-----svTeedLrelFskfGeI~sVrit------gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~ 428 (861)
...++|+|.||.. +-++++|+++|++||+|.+|++. ++++|||||+|.+.++|.+|++.|||+.+.||+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3467899999963 23689999999999999999863 356899999999999999999999999999999
Q ss_pred EEEEeccC
Q 002974 429 IKLEASRP 436 (861)
Q Consensus 429 IkVe~Akp 436 (861)
|+|.++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999975
No 358
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.19 E-value=3.5e-11 Score=121.90 Aligned_cols=76 Identities=13% Similarity=0.305 Sum_probs=68.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCC
Q 002974 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (861)
Q Consensus 276 ~srtLfVgNLP~~vTEedL~elFsqfG~I~svki----tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~ 351 (861)
..++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.+ +..+.|+.|.|.++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 4689999999999999999999999999999985 4778999999999999999999755 5689999999998764
Q ss_pred C
Q 002974 352 K 352 (861)
Q Consensus 352 k 352 (861)
-
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 359
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.17 E-value=2.3e-11 Score=116.40 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=69.5
Q ss_pred cceEEecc----cCCCcHHHHHHHhcccCcEEEEEe-----CCCCccEEEEEECC----H-HH---HHHHHH--HhCCCe
Q 002974 363 GTLVVFNL----DSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYD----I-RA---AETALR--TLNRSD 423 (861)
Q Consensus 363 ~tLfVgNL----p~svTeedLrelFskfGeI~sVri-----tgksKGfAFVeF~d----~-ea---A~kAL~--~LNG~~ 423 (861)
++|||+|| |+.+++++|+++|++||+|.+|++ ++.++|||||+|.| . ++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 999999999999999999999875 67889999999996 3 22 899988 789999
Q ss_pred eCCcEEEEEeccCCchhhh
Q 002974 424 VAGKQIKLEASRPGGARRF 442 (861)
Q Consensus 424 I~Gr~IkVe~Akpk~~rrl 442 (861)
|.|++|+|.+-+.....++
T Consensus 83 I~Gr~irV~ln~~g~~~~~ 101 (136)
T 2j8a_A 83 IMGFKFEVILNKHSILNNI 101 (136)
T ss_dssp ETTEEEEEEECCTTHHHHH
T ss_pred ecCcEEEEEECcccHHHHH
Confidence 9999999999887765443
No 360
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.13 E-value=3.5e-11 Score=115.18 Aligned_cols=73 Identities=18% Similarity=0.277 Sum_probs=65.0
Q ss_pred cEEEEcCC----CCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCC----HHH----HHHHHH--HcCccc
Q 002974 278 RTLFVRNI----NSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYD----IRA----ARNAMK--ALQNKP 338 (861)
Q Consensus 278 rtLfVgNL----P~~vTEedL~elFsqfG~I~svki-----tgksrGyAFVeF~d----~e~----A~kALk--aLnG~~ 338 (861)
..|||+|| |+.+++.+|+++|++||+|.+|.+ |+.++|||||+|.+ +++ |.+|++ .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 999999999999999999999984 78999999999996 322 888988 789999
Q ss_pred cCcceeeeeecC
Q 002974 339 LRRRKLDIHYSI 350 (861)
Q Consensus 339 L~Gr~L~V~~a~ 350 (861)
|.|++|+|.+-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999998753
No 361
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=1.4e-10 Score=106.19 Aligned_cols=66 Identities=20% Similarity=0.287 Sum_probs=60.0
Q ss_pred CCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCch
Q 002974 372 SSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (861)
Q Consensus 372 ~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akpk~~ 439 (861)
..+++++|+++|++||+|.+|++.++++|||||+|.+.++|++|++.++ .+.|++|+|.|++++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEccCCCC
Confidence 5789999999999999999999988899999999999999999999744 47899999999987753
No 362
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=4.5e-10 Score=102.76 Aligned_cols=76 Identities=16% Similarity=0.259 Sum_probs=64.6
Q ss_pred CcEEEEcCCC-------CCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeec
Q 002974 277 SRTLFVRNIN-------SNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (861)
Q Consensus 277 srtLfVgNLP-------~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a 349 (861)
.++|-|.-.. ..+++++|+++|++||+|..|++.++++|||||+|.+.++|++|++.+++ +.+++|+|.|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a 87 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWL 87 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEc
Confidence 4455555443 56899999999999999999998789999999999999999999998555 67999999999
Q ss_pred CCCCC
Q 002974 350 IPKDN 354 (861)
Q Consensus 350 ~~k~~ 354 (861)
.++..
T Consensus 88 ~~~~~ 92 (100)
T 2d9o_A 88 EGQPQ 92 (100)
T ss_dssp SCCCC
T ss_pred cCCCC
Confidence 87643
No 363
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.10 E-value=2.3e-10 Score=105.16 Aligned_cols=77 Identities=17% Similarity=0.316 Sum_probs=66.2
Q ss_pred CCcceEEecc--cCCCc--------HHHHHHHhcccCcEEEEEeCC-------CCccEEEEEECCHHHHHHHHHHhCCCe
Q 002974 361 NQGTLVVFNL--DSSVS--------TEELHQIFGIYGEIREIRDTQ-------HKHNHKFIEFYDIRAAETALRTLNRSD 423 (861)
Q Consensus 361 ~~~tLfVgNL--p~svT--------eedLrelFskfGeI~sVritg-------ksKGfAFVeF~d~eaA~kAL~~LNG~~ 423 (861)
+.+.|.+.|+ +..+. +++|++.|++||+|++|++.. +++|+|||+|.+.++|.+|++.|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4678899998 43443 379999999999999998742 458999999999999999999999999
Q ss_pred eCCcEEEEEeccCC
Q 002974 424 VAGKQIKLEASRPG 437 (861)
Q Consensus 424 I~Gr~IkVe~Akpk 437 (861)
+.||+|+|.++...
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999998753
No 364
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.08 E-value=2e-10 Score=105.63 Aligned_cols=78 Identities=17% Similarity=0.367 Sum_probs=67.6
Q ss_pred CCCCcEEEEcCC--CCCCc--------HHHHHHHhhcCCCEEEEEeC-------CCcccEEEEEeCCHHHHHHHHHHcCc
Q 002974 274 EHPSRTLFVRNI--NSNVE--------DSELKALFEQFGDIRTIYTA-------CKHRGFVMISYYDIRAARNAMKALQN 336 (861)
Q Consensus 274 ~~~srtLfVgNL--P~~vT--------EedL~elFsqfG~I~svkit-------gksrGyAFVeF~d~e~A~kALkaLnG 336 (861)
..|++.|.|.|+ |.++. +++|++.|++||.|..|++. .+++|||||+|.+.++|++|++.|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 357999999998 44443 36899999999999999962 25689999999999999999999999
Q ss_pred cccCcceeeeeecCC
Q 002974 337 KPLRRRKLDIHYSIP 351 (861)
Q Consensus 337 ~~L~Gr~L~V~~a~~ 351 (861)
+.+.||.|+|.|+..
T Consensus 82 ~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 82 RKFANRVVVTKYCDP 96 (105)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEeCCCEEEEEEeCH
Confidence 999999999998753
No 365
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.05 E-value=2.6e-10 Score=125.63 Aligned_cols=77 Identities=16% Similarity=0.311 Sum_probs=67.7
Q ss_pred CCCCCcEEEEcC--CCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccC---cc--eee
Q 002974 273 GEHPSRTLFVRN--INSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLR---RR--KLD 345 (861)
Q Consensus 273 ~~~~srtLfVgN--LP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~---Gr--~L~ 345 (861)
...++++|||+| |+..+||++|+++|++||+|..|++. .+||||||+|.+.++|++|++.|||+.+. |+ .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~-~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECC-TTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 356899999999 57899999999999999999999874 47999999999999999999999999873 44 577
Q ss_pred eeecC
Q 002974 346 IHYSI 350 (861)
Q Consensus 346 V~~a~ 350 (861)
|.|+.
T Consensus 93 ~~~~~ 97 (345)
T 3tht_A 93 LNFVE 97 (345)
T ss_dssp EEECS
T ss_pred EEEee
Confidence 78774
No 366
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.04 E-value=1.4e-10 Score=106.36 Aligned_cols=68 Identities=29% Similarity=0.399 Sum_probs=60.0
Q ss_pred EecccCCCcHHHHHHHh------------cccCcEEEEEeC----CCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Q 002974 367 VFNLDSSVSTEELHQIF------------GIYGEIREIRDT----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIK 430 (861)
Q Consensus 367 VgNLp~svTeedLrelF------------skfGeI~sVrit----gksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~Ik 430 (861)
+.||+..+++++|++.| ++||+|.+|++. ++++|||||+|.+.++|++|++.|||+.+.||+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 66788888888777666 999999999974 34589999999999999999999999999999999
Q ss_pred EEec
Q 002974 431 LEAS 434 (861)
Q Consensus 431 Ve~A 434 (861)
|+++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 367
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.02 E-value=1.2e-10 Score=106.79 Aligned_cols=68 Identities=19% Similarity=0.347 Sum_probs=59.1
Q ss_pred EcCCCCCCcHHHHHHHh------------hcCCCEEEEEeC----CCcccEEEEEeCCHHHHHHHHHHcCccccCcceee
Q 002974 282 VRNINSNVEDSELKALF------------EQFGDIRTIYTA----CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (861)
Q Consensus 282 VgNLP~~vTEedL~elF------------sqfG~I~svkit----gksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~ 345 (861)
+.+|+..+++++|++.| ++||+|..|++. ++++|||||+|.+.++|++|++.|||+.+.||+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45666777777777666 999999999973 45799999999999999999999999999999999
Q ss_pred eeec
Q 002974 346 IHYS 349 (861)
Q Consensus 346 V~~a 349 (861)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 368
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.00 E-value=6e-10 Score=122.73 Aligned_cols=76 Identities=22% Similarity=0.300 Sum_probs=66.4
Q ss_pred ccCCcceEEec--ccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeC---Cc--EEEE
Q 002974 359 DANQGTLVVFN--LDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVA---GK--QIKL 431 (861)
Q Consensus 359 ~~~~~tLfVgN--Lp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~---Gr--~IkV 431 (861)
.....+|||+| |+..+|+++|+++|++||+|++|.+. ..||||||+|.+.++|++|+++|||+++. |+ .|.|
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~-~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~ 93 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 93 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECC-TTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEE
Confidence 34567999999 67899999999999999999999875 47999999999999999999999999883 45 6788
Q ss_pred Eecc
Q 002974 432 EASR 435 (861)
Q Consensus 432 e~Ak 435 (861)
.+++
T Consensus 94 ~~~~ 97 (345)
T 3tht_A 94 NFVE 97 (345)
T ss_dssp EECS
T ss_pred EEee
Confidence 8774
No 369
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.93 E-value=1.7e-09 Score=101.70 Aligned_cols=76 Identities=18% Similarity=0.257 Sum_probs=64.9
Q ss_pred CCcceEEeccc--CCC---cHHHHHHHhcccCcEEEEEeC---------CCCccEEEEEECCHHHHHHHHHHhCCCeeCC
Q 002974 361 NQGTLVVFNLD--SSV---STEELHQIFGIYGEIREIRDT---------QHKHNHKFIEFYDIRAAETALRTLNRSDVAG 426 (861)
Q Consensus 361 ~~~tLfVgNLp--~sv---TeedLrelFskfGeI~sVrit---------gksKGfAFVeF~d~eaA~kAL~~LNG~~I~G 426 (861)
..++|++.|+- .++ .+++|++.|++||+|.+|++. ++.+|++||+|.+.++|.+|++.|||+.+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 46789999983 222 368999999999999998762 2346999999999999999999999999999
Q ss_pred cEEEEEeccC
Q 002974 427 KQIKLEASRP 436 (861)
Q Consensus 427 r~IkVe~Akp 436 (861)
|.|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999864
No 370
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.92 E-value=1.8e-09 Score=101.58 Aligned_cols=76 Identities=14% Similarity=0.228 Sum_probs=66.1
Q ss_pred CCCcEEEEcCCCC--CC---cHHHHHHHhhcCCCEEEEEeC---------CCcccEEEEEeCCHHHHHHHHHHcCccccC
Q 002974 275 HPSRTLFVRNINS--NV---EDSELKALFEQFGDIRTIYTA---------CKHRGFVMISYYDIRAARNAMKALQNKPLR 340 (861)
Q Consensus 275 ~~srtLfVgNLP~--~v---TEedL~elFsqfG~I~svkit---------gksrGyAFVeF~d~e~A~kALkaLnG~~L~ 340 (861)
.++++|+|+|+-. ++ -++||++.|++||+|..|++. ++++|+|||+|.+.++|++|++.|||..+.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3799999999932 22 368999999999999999851 246799999999999999999999999999
Q ss_pred cceeeeeecC
Q 002974 341 RRKLDIHYSI 350 (861)
Q Consensus 341 Gr~L~V~~a~ 350 (861)
||.|.|.|+.
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999999875
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.90 E-value=3e-09 Score=99.54 Aligned_cols=77 Identities=16% Similarity=0.131 Sum_probs=64.8
Q ss_pred CCcceEEecccC--CC--------cHHHHHHHhcccCcEEEEEeCCC-CccEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Q 002974 361 NQGTLVVFNLDS--SV--------STEELHQIFGIYGEIREIRDTQH-KHNHKFIEFYDIRAAETALRTLNRSDVAGKQI 429 (861)
Q Consensus 361 ~~~tLfVgNLp~--sv--------TeedLrelFskfGeI~sVritgk-sKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~I 429 (861)
..+.|.+.|+=. +. .+++|++.|++||.|++|.+... .+|++||+|.+.++|.+|++.|||+.+.||.|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 456788888832 21 24689999999999999987433 48999999999999999999999999999999
Q ss_pred EEEeccCC
Q 002974 430 KLEASRPG 437 (861)
Q Consensus 430 kVe~Akpk 437 (861)
+|.++...
T Consensus 86 ~v~~~~~~ 93 (114)
T 3s6e_A 86 TAAYVPLP 93 (114)
T ss_dssp EEEEECHH
T ss_pred EEEEEcHH
Confidence 99998643
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.88 E-value=3.8e-09 Score=98.86 Aligned_cols=77 Identities=17% Similarity=0.214 Sum_probs=65.9
Q ss_pred CCCCcEEEEcCCCCCC----------cHHHHHHHhhcCCCEEEEEeCC-CcccEEEEEeCCHHHHHHHHHHcCccccCcc
Q 002974 274 EHPSRTLFVRNINSNV----------EDSELKALFEQFGDIRTIYTAC-KHRGFVMISYYDIRAARNAMKALQNKPLRRR 342 (861)
Q Consensus 274 ~~~srtLfVgNLP~~v----------TEedL~elFsqfG~I~svkitg-ksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr 342 (861)
..+++.|.+.|+=..- -++||++.|++||.|..|++.. ..+|||||+|.+.++|++|++.|||..+.||
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 3578899999983221 1468899999999999999743 3589999999999999999999999999999
Q ss_pred eeeeeecC
Q 002974 343 KLDIHYSI 350 (861)
Q Consensus 343 ~L~V~~a~ 350 (861)
.|+|.|+.
T Consensus 84 ~i~v~~~~ 91 (114)
T 3s6e_A 84 MITAAYVP 91 (114)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEEc
Confidence 99999985
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.67 E-value=6.3e-08 Score=87.21 Aligned_cols=75 Identities=27% Similarity=0.419 Sum_probs=63.9
Q ss_pred cCCcceEEecccC----CCcH----HHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Q 002974 360 ANQGTLVVFNLDS----SVST----EELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKL 431 (861)
Q Consensus 360 ~~~~tLfVgNLp~----svTe----edLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkV 431 (861)
....||+|.-.+. .+-+ .+|.+.|++||+|..+++... .+||+|.+.++|.+|++ |||..+.||.|+|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d---~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED---KMWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS---SEEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC---CEEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 4567889988762 3434 679999999999999998653 39999999999999999 9999999999999
Q ss_pred EeccCCc
Q 002974 432 EASRPGG 438 (861)
Q Consensus 432 e~Akpk~ 438 (861)
+++.+.-
T Consensus 81 ~lkt~dW 87 (91)
T 2dnr_A 81 ALKSPSG 87 (91)
T ss_dssp EECCCSS
T ss_pred EeCCCCc
Confidence 9998764
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.64 E-value=6.5e-08 Score=91.62 Aligned_cols=80 Identities=19% Similarity=0.162 Sum_probs=69.8
Q ss_pred CCcceEEecccCC-CcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECC-HHHHHHHHHHhC--CCeeCCcEEEEEeccC
Q 002974 361 NQGTLVVFNLDSS-VSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYD-IRAAETALRTLN--RSDVAGKQIKLEASRP 436 (861)
Q Consensus 361 ~~~tLfVgNLp~s-vTeedLrelFskfGeI~sVritgksKGfAFVeF~d-~eaA~kAL~~LN--G~~I~Gr~IkVe~Akp 436 (861)
....|||+||+.. +++++|+++|++||+|..|.+.. ....|||+|.+ .++|+.|++.|| +..|.|..++++...-
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~-g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~G 95 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVR-GAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEG 95 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCT-TCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCH
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEec-CCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCC
Confidence 3568999999999 99999999999999999999753 34479999999 899999999995 6789999999998876
Q ss_pred Cchhh
Q 002974 437 GGARR 441 (861)
Q Consensus 437 k~~rr 441 (861)
..++.
T Consensus 96 eeE~~ 100 (121)
T 1owx_A 96 EVEKE 100 (121)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66655
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=2.8e-07 Score=87.27 Aligned_cols=76 Identities=18% Similarity=0.174 Sum_probs=64.8
Q ss_pred CCCCCcEEEEcCCCCC-CcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCC-HHHHHHHHHHcC--ccccCcceeeeee
Q 002974 273 GEHPSRTLFVRNINSN-VEDSELKALFEQFGDIRTIYTACKHRGFVMISYYD-IRAARNAMKALQ--NKPLRRRKLDIHY 348 (861)
Q Consensus 273 ~~~~srtLfVgNLP~~-vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d-~e~A~kALkaLn--G~~L~Gr~L~V~~ 348 (861)
.-.+.+.|||+||+.+ +++++|+++|++||+|..|.+. ...-.|||+|.+ .++|.+|++.|+ +..|.|..+++..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~-~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFV-RGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECC-TTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEe-cCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 3456899999999999 9999999999999999999973 233379999999 899999999994 6778888777765
Q ss_pred c
Q 002974 349 S 349 (861)
Q Consensus 349 a 349 (861)
.
T Consensus 93 L 93 (121)
T 1owx_A 93 L 93 (121)
T ss_dssp C
T ss_pred C
Confidence 4
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.44 E-value=3.8e-07 Score=82.15 Aligned_cols=74 Identities=24% Similarity=0.338 Sum_probs=62.1
Q ss_pred CCCcEEEEcCCC----CCCcH----HHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeee
Q 002974 275 HPSRTLFVRNIN----SNVED----SELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (861)
Q Consensus 275 ~~srtLfVgNLP----~~vTE----edL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V 346 (861)
.|..||+|.-.+ .++-+ .+|.+.|.+||+|..+++-. +.+||+|.+.++|.+|++ |+|..+.||.|+|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~---d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE---DKMWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS---SSEEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec---CCEEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 456788888776 23333 67899999999999999733 339999999999999998 9999999999999
Q ss_pred eecCCC
Q 002974 347 HYSIPK 352 (861)
Q Consensus 347 ~~a~~k 352 (861)
+++.+.
T Consensus 81 ~lkt~d 86 (91)
T 2dnr_A 81 ALKSPS 86 (91)
T ss_dssp EECCCS
T ss_pred EeCCCC
Confidence 998764
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.37 E-value=2.7e-07 Score=83.62 Aligned_cols=74 Identities=26% Similarity=0.355 Sum_probs=62.3
Q ss_pred ccCCcceEEecccCC-----CcH----HHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Q 002974 359 DANQGTLVVFNLDSS-----VST----EELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQI 429 (861)
Q Consensus 359 ~~~~~tLfVgNLp~s-----vTe----edLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~I 429 (861)
.....||+|.-++.. +-+ .+|.+.|++||+|..+++.... +||+|.+.++|.+||+ |||..+.||.|
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---~fVtF~d~~sAl~AI~-ldG~~v~Gr~L 87 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---MLVTFADSHSALSVLD-VDGMKVKGRAV 87 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---EEEECSCSHHHHHHHH-GGGSEETTEEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---EEEEEcChHHHHHHHh-cCCeeeCCeEE
Confidence 345789999988643 323 6699999999999999986443 9999999999999999 99999999999
Q ss_pred EEEeccC
Q 002974 430 KLEASRP 436 (861)
Q Consensus 430 kVe~Akp 436 (861)
+|++..+
T Consensus 88 ~V~~k~~ 94 (95)
T 1ufw_A 88 KISGPSS 94 (95)
T ss_dssp EEECCCC
T ss_pred EEeccCC
Confidence 9987654
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.33 E-value=6.9e-07 Score=91.22 Aligned_cols=63 Identities=19% Similarity=0.226 Sum_probs=57.0
Q ss_pred CcHHHHHHHhcccCcEEEEEeC----C-----CCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 002974 374 VSTEELHQIFGIYGEIREIRDT----Q-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (861)
Q Consensus 374 vTeedLrelFskfGeI~sVrit----g-----ksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akp 436 (861)
-.+++|++.|++||+|.+|.+. . +.+|++||+|.+.++|.+|++.|||+.++||.|+|.++..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 4568999999999999998862 2 6789999999999999999999999999999999999863
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.25 E-value=1.5e-06 Score=88.72 Aligned_cols=62 Identities=13% Similarity=0.155 Sum_probs=56.6
Q ss_pred CcHHHHHHHhhcCCCEEEEEe---------CCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecC
Q 002974 289 VEDSELKALFEQFGDIRTIYT---------ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (861)
Q Consensus 289 vTEedL~elFsqfG~I~svki---------tgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~ 350 (861)
-.+++|++.|++||.|..+++ ++.++|++||+|.+.++|++|++.|+|..+.||.|.+.|+.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 357899999999999999986 23789999999999999999999999999999999999874
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.12 E-value=2.6e-06 Score=77.24 Aligned_cols=72 Identities=14% Similarity=0.218 Sum_probs=60.1
Q ss_pred CCCcEEEEcCCCCC-----C-cH---HHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceee
Q 002974 275 HPSRTLFVRNINSN-----V-ED---SELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (861)
Q Consensus 275 ~~srtLfVgNLP~~-----v-TE---edL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~ 345 (861)
.|..||+|.-++.. + ++ .+|.+.|.+||+|..+++-.. -+||+|.+.++|.+||+ |+|+.+.||.|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d---~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG---QMLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT---EEEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC---cEEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 46789999988743 2 22 568899999999999996322 29999999999999998 999999999999
Q ss_pred eeecC
Q 002974 346 IHYSI 350 (861)
Q Consensus 346 V~~a~ 350 (861)
|++-.
T Consensus 89 V~~k~ 93 (95)
T 1ufw_A 89 ISGPS 93 (95)
T ss_dssp EECCC
T ss_pred EeccC
Confidence 98754
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.88 E-value=2.9e-05 Score=72.09 Aligned_cols=73 Identities=27% Similarity=0.274 Sum_probs=65.7
Q ss_pred CCcceEEecccCCCcHHHHHHHhccc-----CcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIY-----GEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskf-----GeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~A 434 (861)
..++|-+-|||..+++..|+.+..+| |.|+.|.+.+.. +=|+|+|.|...|.+|.-+|+|.+|.||+|+|.-.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-CceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 46899999999999999999999999 999998876554 45999999999999999999999999999998643
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.42 E-value=0.00092 Score=61.42 Aligned_cols=89 Identities=17% Similarity=0.206 Sum_probs=74.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhc-----CCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeec
Q 002974 275 HPSRTLFVRNINSNVEDSELKALFEQ-----FGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (861)
Q Consensus 275 ~~srtLfVgNLP~~vTEedL~elFsq-----fG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a 349 (861)
...++|.|.|||+.+.++.|.-+|+. =|+|..+.... +-|+|+|.+.+.|++.++ -....|++..|.|...
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~ 81 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLA-QADHELHGAQLSLRPA 81 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEEC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcC
Confidence 34689999999999999999999997 26899998744 789999999999999996 4467889999999776
Q ss_pred CCCCCCCCcccCCcceEEecccCCCc
Q 002974 350 IPKDNPSEKDANQGTLVVFNLDSSVS 375 (861)
Q Consensus 350 ~~k~~~~~k~~~~~tLfVgNLp~svT 375 (861)
.+++ .++|++.+|++.++
T Consensus 82 ~~~~--------~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 82 PPRA--------PARLLLQGLPPGTS 99 (104)
T ss_dssp CCCC--------CCCCCCCSCCCCCC
T ss_pred CCCC--------cceEeeecCCCCCC
Confidence 5543 36899999998764
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.00034 Score=64.98 Aligned_cols=72 Identities=14% Similarity=0.171 Sum_probs=64.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcC-----CCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeee
Q 002974 275 HPSRTLFVRNINSNVEDSELKALFEQF-----GDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (861)
Q Consensus 275 ~~srtLfVgNLP~~vTEedL~elFsqf-----G~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~ 347 (861)
...++|-+=|||..++++.|+.+.+.+ |.|+.+.+- ...+=|+|+|.|...|-+|.-+|+|..|.||+|++.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~-pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLV-SDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEE-TTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEe-cCCCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 457899999999999999999999999 999999873 344569999999999999998999999999999984
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.11 E-value=0.0017 Score=59.68 Aligned_cols=76 Identities=21% Similarity=0.234 Sum_probs=66.6
Q ss_pred CcceEEecccCCCcHHHHHHHhcc-----cCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 002974 362 QGTLVVFNLDSSVSTEELHQIFGI-----YGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (861)
Q Consensus 362 ~~tLfVgNLp~svTeedLrelFsk-----fGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akp 436 (861)
..+|.|.|||+.++++.|.-+|+. =|+|..+...+ +-|+|+|.+.+.|++.|+ -....+.+..|.|.+.-+
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLA-QADHELHGAQLSLRPAPP 83 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEECCC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcCCC
Confidence 468999999999999999999987 26899998765 779999999999999998 237789999999999988
Q ss_pred Cchhh
Q 002974 437 GGARR 441 (861)
Q Consensus 437 k~~rr 441 (861)
+..++
T Consensus 84 ~~~~r 88 (104)
T 2dhx_A 84 RAPAR 88 (104)
T ss_dssp CCCCC
T ss_pred CCcce
Confidence 88766
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.76 E-value=0.0016 Score=59.88 Aligned_cols=76 Identities=18% Similarity=0.233 Sum_probs=63.0
Q ss_pred CcceEEecccCCC-c----HHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 002974 362 QGTLVVFNLDSSV-S----TEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (861)
Q Consensus 362 ~~tLfVgNLp~sv-T----eedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~Gr~IkVe~Akp 436 (861)
.++|+|.||+.++ . .+.++++|..|+++........-+ =..|.|.+.++|.+|...|++..+.|++|+|.++++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK-RVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT-EEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce-EEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 3689999998866 2 257789999999888766543223 468999999999999999999999999999999986
Q ss_pred Cc
Q 002974 437 GG 438 (861)
Q Consensus 437 k~ 438 (861)
-.
T Consensus 84 ~~ 85 (104)
T 1wey_A 84 LH 85 (104)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.70 E-value=0.0018 Score=59.58 Aligned_cols=75 Identities=17% Similarity=0.223 Sum_probs=63.8
Q ss_pred CcEEEEcCCCCCC-c----HHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCcceeeeeecCC
Q 002974 277 SRTLFVRNINSNV-E----DSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (861)
Q Consensus 277 srtLfVgNLP~~v-T----EedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~Gr~L~V~~a~~ 351 (861)
.++|+|.||+.++ + .+.++++|.+|+++..... -++-.-..|.|.+.++|.+|...|++..+.|++|+|-++.+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~-lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQY-FKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEE-ETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceee-cCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 5789999998876 2 2578899999998877664 35555679999999999999999999999999999999875
Q ss_pred C
Q 002974 352 K 352 (861)
Q Consensus 352 k 352 (861)
.
T Consensus 84 ~ 84 (104)
T 1wey_A 84 L 84 (104)
T ss_dssp S
T ss_pred C
Confidence 4
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.48 E-value=0.0078 Score=56.71 Aligned_cols=77 Identities=16% Similarity=0.144 Sum_probs=63.9
Q ss_pred ccCCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCCeeCC-cEEEEEeccCC
Q 002974 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAG-KQIKLEASRPG 437 (861)
Q Consensus 359 ~~~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG~~I~G-r~IkVe~Akpk 437 (861)
....+.|.|.+.|... -..|.+.|++||+|.+... ....++-.|+|.+..+|++||. .||..|.| ..|=|.+...+
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~d~ 97 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCIDK 97 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECCCH
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECCCH
Confidence 3456789999999885 5667789999999999886 4567899999999999999999 69999985 77888887654
Q ss_pred c
Q 002974 438 G 438 (861)
Q Consensus 438 ~ 438 (861)
.
T Consensus 98 ~ 98 (119)
T 1wwh_A 98 N 98 (119)
T ss_dssp H
T ss_pred H
Confidence 4
No 388
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.38 E-value=0.05 Score=49.57 Aligned_cols=55 Identities=20% Similarity=0.317 Sum_probs=45.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcC
Q 002974 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQ 335 (861)
Q Consensus 277 srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLn 335 (861)
.+.++| ++|+.+...||.++|+.||.|.--.+ .---|||.|.+++.|..|++.+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi---dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE---ETTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEE---cCCeEEEEecCHHHHHHHHHhcc
Confidence 566777 99999999999999999996544444 23479999999999999998764
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.23 E-value=0.037 Score=49.78 Aligned_cols=64 Identities=5% Similarity=0.050 Sum_probs=53.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-CCC------cccEEEEEeCCHHHHHHHHHHcCccccCc
Q 002974 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYT-ACK------HRGFVMISYYDIRAARNAMKALQNKPLRR 341 (861)
Q Consensus 278 rtLfVgNLP~~vTEedL~elFsqfG~I~svki-tgk------srGyAFVeF~d~e~A~kALkaLnG~~L~G 341 (861)
++|.|++||+..||+++.+.+..+..+...+. .++ .-.-|||.|.+.+++....+.++|..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 57999999999999999999999988766552 222 22479999999999999999999988653
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.67 E-value=0.088 Score=49.59 Aligned_cols=72 Identities=15% Similarity=0.167 Sum_probs=59.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcCccccCc-ceeeeeec
Q 002974 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRR-RKLDIHYS 349 (861)
Q Consensus 275 ~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLnG~~L~G-r~L~V~~a 349 (861)
...+.|-|=+.|+.. ...+...|++||+|.+... .....+..|.|.+..+|++||. .||+.|.| -.|-|.+.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 347888998998884 6778889999999999887 3456799999999999999996 79998874 55666654
No 391
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=94.59 E-value=0.16 Score=45.65 Aligned_cols=63 Identities=11% Similarity=0.098 Sum_probs=52.1
Q ss_pred cceEEecccCCCcHHHHHHHhcccCcEEEEEe-CCC------CccEEEEEECCHHHHHHHHHHhCCCeeC
Q 002974 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-TQH------KHNHKFIEFYDIRAAETALRTLNRSDVA 425 (861)
Q Consensus 363 ~tLfVgNLp~svTeedLrelFskfGeI~sVri-tgk------sKGfAFVeF~d~eaA~kAL~~LNG~~I~ 425 (861)
++|.|++||+.+|++++.+.++...++..... .++ .-.-|||.|.+.+++..-.+.++|..+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 47999999999999999999999988766543 121 1235999999999999999999999774
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.17 E-value=0.13 Score=46.80 Aligned_cols=52 Identities=25% Similarity=0.380 Sum_probs=42.4
Q ss_pred cceEEecccCCCcHHHHHHHhcccCcE--EEEEeCCCCccEEEEEECCHHHHHHHHHHhC
Q 002974 363 GTLVVFNLDSSVSTEELHQIFGIYGEI--REIRDTQHKHNHKFIEFYDIRAAETALRTLN 420 (861)
Q Consensus 363 ~tLfVgNLp~svTeedLrelFskfGeI--~sVritgksKGfAFVeF~d~eaA~kAL~~LN 420 (861)
..++| ++|+++...||.++|+.||.| ..|.. ..|||.|.+++.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~I~WidD-----TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDD-----TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEET-----TEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEEEEEEcC-----CeEEEEecCHHHHHHHHHhcc
Confidence 34555 999999999999999999843 34442 369999999999999999763
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.70 E-value=0.065 Score=48.93 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=44.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcC
Q 002974 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQ 335 (861)
Q Consensus 278 rtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLn 335 (861)
+.++| ++|+.+...||.++|+.||.|.--.+ .-.-|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~Wi---dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEE---ETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEEE---cCCeEEEEecCHHHHHHHHHhcc
Confidence 45666 99999999999999999996554445 23479999999999999998764
No 394
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.25 E-value=0.073 Score=50.92 Aligned_cols=73 Identities=16% Similarity=0.203 Sum_probs=57.1
Q ss_pred CcceEEecccCCCcHHHHHHHhcccCcEEE-EEe----------------CC--CCccEEEEEECCHHHHHHHHHHhCCC
Q 002974 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIRE-IRD----------------TQ--HKHNHKFIEFYDIRAAETALRTLNRS 422 (861)
Q Consensus 362 ~~tLfVgNLp~svTeedLrelFskfGeI~s-Vri----------------tg--ksKGfAFVeF~d~eaA~kAL~~LNG~ 422 (861)
...|.|.+.|+..+. .+.+.|++||.|.+ +.. .+ ...++..|+|.+..+|.+||+ -||+
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 456888999776654 45678999999977 211 11 135678999999999999999 6999
Q ss_pred eeCCcEEEEEeccC
Q 002974 423 DVAGKQIKLEASRP 436 (861)
Q Consensus 423 ~I~Gr~IkVe~Akp 436 (861)
.|.|..|=|.+..+
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99999999998863
No 395
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.79 E-value=0.04 Score=62.91 Aligned_cols=58 Identities=12% Similarity=0.300 Sum_probs=44.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHH
Q 002974 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMK 332 (861)
Q Consensus 274 ~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALk 332 (861)
++..|+|||. .|..+++.+|.++|++||+|..+.......-||.|+|.+.++++.++.
T Consensus 50 ~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 50 EQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred HHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 3458999997 799999999999999999999998755555699999999999997765
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.65 E-value=0.049 Score=62.21 Aligned_cols=56 Identities=13% Similarity=0.145 Sum_probs=44.0
Q ss_pred CCcceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHH
Q 002974 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALR 417 (861)
Q Consensus 361 ~~~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~ 417 (861)
..+.|+|. .+..+++.+|.++|++||.|..+........||.|+|.+.+++.+++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 35789997 799999999999999999999998776667799999999999997765
No 397
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=91.92 E-value=0.091 Score=48.00 Aligned_cols=53 Identities=23% Similarity=0.360 Sum_probs=42.6
Q ss_pred ceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhC
Q 002974 364 TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLN 420 (861)
Q Consensus 364 tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LN 420 (861)
.++| ++|+++...||.++|+.||.| .|+... -..|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~Wid--DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWID--DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEE--TTEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEc--CCeEEEEecCHHHHHHHHHhcc
Confidence 4555 999999999999999999843 333321 3479999999999999999775
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=91.33 E-value=0.19 Score=45.72 Aligned_cols=66 Identities=8% Similarity=0.040 Sum_probs=51.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE-eCCC------cccEEEEEeCCHHHHHHHHHHcCccccCc
Q 002974 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIY-TACK------HRGFVMISYYDIRAARNAMKALQNKPLRR 341 (861)
Q Consensus 276 ~srtLfVgNLP~~vTEedL~elFsqfG~I~svk-itgk------srGyAFVeF~d~e~A~kALkaLnG~~L~G 341 (861)
.+-+|.|+.||+..||+++.+.+..+=++...+ +.++ .-.-|||.|.+.++.....+..+|..+.+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 467899999999999999988887765553332 1111 12369999999999999999999988653
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=89.72 E-value=0.58 Score=42.53 Aligned_cols=72 Identities=10% Similarity=0.040 Sum_probs=53.4
Q ss_pred cceEEecccCCCcHHHHHHHhcccCcEEEEEe-CCC----C--ccEEEEEECCHHHHHHHHHHhCCCeeCC-----cEEE
Q 002974 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-TQH----K--HNHKFIEFYDIRAAETALRTLNRSDVAG-----KQIK 430 (861)
Q Consensus 363 ~tLfVgNLp~svTeedLrelFskfGeI~sVri-tgk----s--KGfAFVeF~d~eaA~kAL~~LNG~~I~G-----r~Ik 430 (861)
-+|.|+.||+.+|++++.+.++..-++..... .++ . -.-|||.|.+.++...-.+..+|..+-+ .+..
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~ 89 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAV 89 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeE
Confidence 47999999999999999998888666543221 111 1 1248999999999999999999997742 3445
Q ss_pred EEec
Q 002974 431 LEAS 434 (861)
Q Consensus 431 Ve~A 434 (861)
|++|
T Consensus 90 VE~A 93 (97)
T 2l08_A 90 VEFA 93 (97)
T ss_dssp EEEC
T ss_pred EEec
Confidence 5555
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=88.49 E-value=0.43 Score=45.61 Aligned_cols=71 Identities=15% Similarity=0.196 Sum_probs=52.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE-eC-----------------C-CcccEEEEEeCCHHHHHHHHHHcCcc
Q 002974 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIY-TA-----------------C-KHRGFVMISYYDIRAARNAMKALQNK 337 (861)
Q Consensus 277 srtLfVgNLP~~vTEedL~elFsqfG~I~svk-it-----------------g-ksrGyAFVeF~d~e~A~kALkaLnG~ 337 (861)
...|.|=+.|++ ....+.+.|++||.|.+-. .+ . ...++..|+|.+..+|++||. .||+
T Consensus 7 e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 445666667544 4556778899999997732 11 0 135688999999999999996 8999
Q ss_pred ccCcceeeeeec
Q 002974 338 PLRRRKLDIHYS 349 (861)
Q Consensus 338 ~L~Gr~L~V~~a 349 (861)
.|.|..|-|.+.
T Consensus 85 ii~G~mIGV~Py 96 (132)
T 3p3d_A 85 VFNGVLLGVIPY 96 (132)
T ss_dssp EETTEECEEEEC
T ss_pred EeCcEEEEEEEC
Confidence 999887777665
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=77.52 E-value=4.5 Score=46.54 Aligned_cols=64 Identities=19% Similarity=0.273 Sum_probs=50.1
Q ss_pred cCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHcC
Q 002974 267 VGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQ 335 (861)
Q Consensus 267 ~Ge~~~~~~~srtLfVgNLP~~vTEedL~elFsqfG~I~svkitgksrGyAFVeF~d~e~A~kALkaLn 335 (861)
.|+.+...+ ...++|+ +|..+...+|.++|+.||.|.-.++ ....|||.|.+.+.|..+++++.
T Consensus 431 ~g~d~~~~R-~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wi---ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 431 EGPDLQPKR-DHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp SSCCCCCCG-GGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEEC---SSSEEEEECSCHHHHHHHHHHHT
T ss_pred CCCCCCCCc-CcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEE---cCCeEEEEECCHHHHHHHHHHHH
Confidence 344443333 4578887 9999999999999999997765556 33469999999999999999875
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=55.43 E-value=16 Score=42.05 Aligned_cols=55 Identities=22% Similarity=0.312 Sum_probs=44.4
Q ss_pred cceEEecccCCCcHHHHHHHhcccCcEEEEEeCCCCccEEEEEECCHHHHHHHHHHhCC
Q 002974 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNR 421 (861)
Q Consensus 363 ~tLfVgNLp~svTeedLrelFskfGeI~sVritgksKGfAFVeF~d~eaA~kAL~~LNG 421 (861)
..++|+ ++..+...+|.+.|+.||.| +|+.. ....|||.|.+.+.|..+++.++.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wi--ddt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWI--DDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEEC--SSSEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEE--cCCeEEEEECCHHHHHHHHHHHHh
Confidence 456665 99999999999999999965 44443 345699999999999999998853
Done!