BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002975
(861 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EYY|A Chain A, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EYY|B Chain B, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EYY|C Chain C, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EYY|D Chain D, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EZ0|A Chain A, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EZ0|B Chain B, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EZ0|C Chain C, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EZ0|D Chain D, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi
Length = 510
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 744 GETSHPKTLEIYAELDQLALKIKEFGYLPDTNFVLHELEEEQKVQYLFQHSEKIAVAF 801
G T+HP T +I AE + ALK ++ LP F L + + Q L H E AV F
Sbjct: 173 GHTAHPGTSQIVAECIEQALKQEQ---LPQAIFTLLQGNQRALGQALVSHPEIKAVGF 227
>pdb|1IBG|L Chain L, Structure And Specificity Of The Anti-Digoxin Antibody
40-50
Length = 217
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 738 VHKFHVGETSHPKTLEIYAELDQLALKIKEFGYLPDTNFVL--HELEEEQKVQYLFQHSE 795
+H + PK L A + + + + G T+F L H +EEE Y QHS
Sbjct: 36 IHWYQQKPGQPPKLLIYLASILESGVPARFSGSGSGTDFTLNIHPVEEEDAATYYCQHSR 95
Query: 796 KIAVAFG 802
+ + FG
Sbjct: 96 EYPLTFG 102
>pdb|4ATD|A Chain A, Crystal Structure Of Native Raucaffricine Glucosidase
pdb|4ATD|B Chain B, Crystal Structure Of Native Raucaffricine Glucosidase
pdb|4ATL|A Chain A, Crystal Structure Of Raucaffricine Glucosidase In Complex
With Glucose
pdb|4ATL|B Chain B, Crystal Structure Of Raucaffricine Glucosidase In Complex
With Glucose
Length = 513
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 353 MSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVA 385
+SW+ ++ G SGG +KE + ++++I G +A
Sbjct: 97 ISWSRVLPGGRLSGGVNKEGINYYNNLIDGLLA 129
>pdb|4A3Y|A Chain A, Crystal Structure Of Raucaffricine Glucosidase From
Ajmaline Biosynthesis Pathway
pdb|4A3Y|B Chain B, Crystal Structure Of Raucaffricine Glucosidase From
Ajmaline Biosynthesis Pathway
Length = 540
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 353 MSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVA 385
+SW+ ++ G SGG +KE + ++++I G +A
Sbjct: 97 ISWSRVLPGGRLSGGVNKEGINYYNNLIDGLLA 129
>pdb|3U57|A Chain A, Structures Of Alkaloid Biosynthetic Glucosidases Decode
Substrate Specificity
pdb|3U57|B Chain B, Structures Of Alkaloid Biosynthetic Glucosidases Decode
Substrate Specificity
pdb|3U5U|A Chain A, Structures Of Alkaloid Biosynthetic Glucosidases Decode
Substrate Specificity
pdb|3U5U|B Chain B, Structures Of Alkaloid Biosynthetic Glucosidases Decode
Substrate Specificity
pdb|3U5Y|A Chain A, Structures Of Alkaloid Biosynthetic Glucosidases Decode
Substrate Specificity
pdb|3U5Y|B Chain B, Structures Of Alkaloid Biosynthetic Glucosidases Decode
Substrate Specificity
pdb|4EK7|A Chain A, High Speed X-ray Analysis Of Plant Enzymes At Room
Temperature
pdb|4EK7|B Chain B, High Speed X-ray Analysis Of Plant Enzymes At Room
Temperature
Length = 513
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 353 MSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVA 385
+SW+ ++ G SGG +KE + ++++I G +A
Sbjct: 97 ISWSRVLPGGRLSGGVNKEGINYYNNLIDGLLA 129
>pdb|3I4T|A Chain A, Crystal Structure Of Putative Diphthine Synthase From
Entamoeba Histolytica
Length = 292
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 654 LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVAN 713
L DV F G + GD +L + A+ ILE A +++ ++Y + H +
Sbjct: 59 LQCDVAKLEEFYGKKVIIGDRDLVETEADQILEPAKTKNVALLVVGDVYGATTHSDIFVR 118
Query: 714 IRKRMKERNLIKEA------GCSWIE 733
+K E +I A GCS ++
Sbjct: 119 CQKMGIEVKVIHNASIMNAIGCSGLQ 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,891,402
Number of Sequences: 62578
Number of extensions: 955186
Number of successful extensions: 2358
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2351
Number of HSP's gapped (non-prelim): 11
length of query: 861
length of database: 14,973,337
effective HSP length: 107
effective length of query: 754
effective length of database: 8,277,491
effective search space: 6241228214
effective search space used: 6241228214
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)