Query 002975
Match_columns 861
No_of_seqs 829 out of 5386
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 14:32:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002975.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002975hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2E-154 4E-159 1376.9 95.2 802 48-859 56-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 2E-125 4E-130 1100.3 71.3 612 246-861 85-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 3.2E-81 6.9E-86 747.0 67.4 687 143-856 49-746 (857)
4 PLN03081 pentatricopeptide (PP 100.0 1.1E-68 2.3E-73 624.0 54.9 479 137-624 79-561 (697)
5 PLN03218 maturation of RBCL 1; 100.0 1.9E-67 4.2E-72 613.2 56.5 529 75-658 367-915 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 4E-64 8.8E-69 585.4 61.9 549 213-780 367-964 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.3E-34 2.8E-39 354.9 73.3 651 49-718 199-897 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.5E-34 5.5E-39 352.4 74.8 652 52-722 134-867 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 8E-36 1.7E-40 253.8 7.4 106 728-851 2-116 (116)
10 PRK11447 cellulose synthase su 100.0 4.9E-24 1.1E-28 261.2 67.2 638 44-723 29-743 (1157)
11 PRK11447 cellulose synthase su 100.0 4.7E-23 1E-27 252.6 59.4 610 81-722 31-701 (1157)
12 PRK09782 bacteriophage N4 rece 99.9 1.8E-22 3.9E-27 235.3 60.1 639 46-723 47-742 (987)
13 PRK09782 bacteriophage N4 rece 99.9 1.1E-19 2.3E-24 212.3 61.3 557 127-720 58-705 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 8.1E-20 1.8E-24 187.9 36.8 444 252-712 52-510 (966)
15 KOG4626 O-linked N-acetylgluco 99.9 6.8E-19 1.5E-23 181.2 30.8 413 291-720 56-484 (966)
16 TIGR00990 3a0801s09 mitochondr 99.8 6.6E-17 1.4E-21 186.4 40.7 388 320-720 129-570 (615)
17 PRK11788 tetratricopeptide rep 99.8 6.6E-18 1.4E-22 184.9 30.9 290 433-729 45-355 (389)
18 KOG2002 TPR-containing nuclear 99.8 1.1E-14 2.4E-19 158.9 53.7 578 129-724 146-801 (1018)
19 PRK11788 tetratricopeptide rep 99.8 1.3E-16 2.9E-21 174.6 32.6 260 425-690 71-354 (389)
20 PRK10049 pgaA outer membrane p 99.8 4.6E-15 1E-19 174.2 43.4 385 324-721 21-456 (765)
21 PRK15174 Vi polysaccharide exp 99.8 3.5E-15 7.7E-20 171.3 40.4 329 354-692 44-386 (656)
22 KOG2002 TPR-containing nuclear 99.8 7.1E-14 1.5E-18 152.7 47.5 481 196-690 252-801 (1018)
23 TIGR00990 3a0801s09 mitochondr 99.8 1E-14 2.2E-19 168.3 43.6 269 436-720 307-596 (615)
24 KOG4422 Uncharacterized conser 99.8 2.2E-14 4.9E-19 142.1 39.1 468 47-578 119-619 (625)
25 PRK15174 Vi polysaccharide exp 99.8 3.4E-15 7.5E-20 171.4 38.1 327 387-722 41-382 (656)
26 PRK10049 pgaA outer membrane p 99.7 4.8E-14 1E-18 165.7 45.3 364 321-695 52-464 (765)
27 PRK14574 hmsH outer membrane p 99.7 5.8E-13 1.3E-17 153.1 44.8 188 533-720 301-512 (822)
28 KOG2076 RNA polymerase III tra 99.7 2.9E-11 6.3E-16 131.9 54.1 618 54-717 150-891 (895)
29 KOG4318 Bicoid mRNA stability 99.7 2.1E-12 4.6E-17 139.5 44.0 567 64-669 11-641 (1088)
30 KOG4422 Uncharacterized conser 99.7 1.4E-12 3E-17 129.6 38.8 444 145-652 116-587 (625)
31 PRK14574 hmsH outer membrane p 99.7 6E-12 1.3E-16 144.9 48.4 437 89-592 45-519 (822)
32 KOG0495 HAT repeat protein [RN 99.7 2.7E-10 5.8E-15 119.5 53.8 507 200-734 366-891 (913)
33 KOG0495 HAT repeat protein [RN 99.6 8.9E-10 1.9E-14 115.7 53.9 490 188-700 384-893 (913)
34 KOG2003 TPR repeat-containing 99.6 1.5E-12 3.2E-17 130.0 27.2 515 45-605 164-709 (840)
35 PF13429 TPR_15: Tetratricopep 99.5 1.2E-14 2.6E-19 150.4 10.0 253 461-718 15-274 (280)
36 KOG2076 RNA polymerase III tra 99.5 1.5E-11 3.2E-16 134.1 33.4 327 402-732 153-523 (895)
37 KOG2003 TPR repeat-containing 99.5 6.6E-12 1.4E-16 125.4 26.6 272 432-709 428-711 (840)
38 KOG4318 Bicoid mRNA stability 99.5 8E-11 1.7E-15 127.6 36.7 532 166-731 11-603 (1088)
39 KOG1155 Anaphase-promoting com 99.5 1.3E-10 2.9E-15 117.2 32.2 340 336-719 179-534 (559)
40 KOG1126 DNA-binding cell divis 99.5 8.2E-12 1.8E-16 132.0 23.8 242 470-720 335-585 (638)
41 KOG1126 DNA-binding cell divis 99.4 1.3E-11 2.7E-16 130.7 22.8 275 438-721 334-620 (638)
42 KOG0547 Translocase of outer m 99.4 8.2E-10 1.8E-14 112.3 33.8 213 501-719 338-564 (606)
43 PRK10747 putative protoheme IX 99.4 1.4E-10 3.1E-15 125.6 29.8 274 436-719 97-388 (398)
44 PRK10747 putative protoheme IX 99.4 2.5E-10 5.4E-15 123.7 30.0 246 397-650 127-385 (398)
45 KOG1155 Anaphase-promoting com 99.4 1.9E-08 4E-13 102.1 38.5 346 293-650 174-531 (559)
46 KOG1173 Anaphase-promoting com 99.4 2.9E-09 6.3E-14 110.6 33.4 255 459-720 249-517 (611)
47 TIGR00540 hemY_coli hemY prote 99.4 1.4E-09 2.9E-14 118.7 32.8 59 659-718 336-396 (409)
48 TIGR00540 hemY_coli hemY prote 99.4 6.2E-10 1.3E-14 121.4 29.9 283 399-686 95-398 (409)
49 PF13429 TPR_15: Tetratricopep 99.3 1E-11 2.2E-16 128.6 14.1 252 360-617 16-275 (280)
50 TIGR02521 type_IV_pilW type IV 99.3 3.6E-10 7.7E-15 113.9 23.7 198 522-720 29-231 (234)
51 KOG2047 mRNA splicing factor [ 99.3 6.9E-07 1.5E-11 94.4 46.3 507 112-676 101-712 (835)
52 KOG1915 Cell cycle control pro 99.3 2.2E-07 4.7E-12 94.5 39.7 477 230-720 86-624 (677)
53 KOG1840 Kinesin light chain [C 99.2 1E-09 2.2E-14 117.9 22.9 231 489-719 199-477 (508)
54 KOG0985 Vesicle coat protein c 99.2 1.4E-06 3.1E-11 96.2 46.5 145 555-720 1104-1248(1666)
55 KOG3616 Selective LIM binding 99.2 6.2E-08 1.3E-12 103.0 34.4 209 125-379 456-674 (1636)
56 KOG1915 Cell cycle control pro 99.2 1.1E-06 2.4E-11 89.5 41.4 421 126-584 86-536 (677)
57 KOG1173 Anaphase-promoting com 99.2 5.4E-08 1.2E-12 101.4 32.8 256 363-628 255-524 (611)
58 PF13041 PPR_2: PPR repeat fam 99.2 1.8E-11 3.8E-16 88.3 5.2 50 143-192 1-50 (50)
59 COG3071 HemY Uncharacterized e 99.2 2.6E-08 5.7E-13 99.7 27.9 274 436-719 97-388 (400)
60 COG2956 Predicted N-acetylgluc 99.2 5.2E-08 1.1E-12 94.5 28.9 261 369-636 51-325 (389)
61 KOG0547 Translocase of outer m 99.2 5.5E-08 1.2E-12 99.4 30.4 210 402-617 340-564 (606)
62 PF13041 PPR_2: PPR repeat fam 99.2 5.8E-11 1.3E-15 85.6 6.5 50 553-602 1-50 (50)
63 PRK12370 invasion protein regu 99.2 6.6E-09 1.4E-13 117.8 26.5 242 470-721 277-535 (553)
64 COG3071 HemY Uncharacterized e 99.2 6.4E-08 1.4E-12 97.0 29.1 278 366-652 98-387 (400)
65 KOG3616 Selective LIM binding 99.2 8.9E-06 1.9E-10 87.1 46.4 196 85-347 739-934 (1636)
66 KOG1129 TPR repeat-containing 99.2 1.7E-09 3.8E-14 104.3 17.0 227 458-721 227-458 (478)
67 COG2956 Predicted N-acetylgluc 99.1 8.9E-08 1.9E-12 92.9 27.9 306 401-742 48-368 (389)
68 PRK11189 lipoprotein NlpI; Pro 99.1 8.2E-09 1.8E-13 107.0 22.4 211 503-722 40-266 (296)
69 KOG2376 Signal recognition par 99.1 1.4E-06 3E-11 91.6 36.3 431 256-714 20-513 (652)
70 KOG2047 mRNA splicing factor [ 99.1 1.6E-05 3.5E-10 84.5 43.9 532 79-642 103-710 (835)
71 KOG1174 Anaphase-promoting com 99.1 6.2E-07 1.3E-11 89.8 31.4 304 384-693 190-506 (564)
72 KOG4162 Predicted calmodulin-b 99.1 7.2E-07 1.6E-11 96.6 34.1 397 312-720 317-782 (799)
73 TIGR02521 type_IV_pilW type IV 99.1 5.1E-08 1.1E-12 98.1 24.2 198 455-687 32-232 (234)
74 PRK12370 invasion protein regu 99.0 2.5E-08 5.5E-13 113.1 23.9 210 503-720 275-501 (553)
75 KOG0985 Vesicle coat protein c 99.0 2.6E-05 5.6E-10 86.7 44.7 351 186-578 844-1217(1666)
76 KOG3785 Uncharacterized conser 99.0 7.2E-07 1.6E-11 87.4 29.1 147 540-690 339-493 (557)
77 KOG1840 Kinesin light chain [C 99.0 6.9E-08 1.5E-12 104.1 24.1 234 425-686 201-478 (508)
78 COG3063 PilF Tfp pilus assembl 99.0 2.9E-08 6.3E-13 92.0 17.6 162 557-723 37-204 (250)
79 PRK11189 lipoprotein NlpI; Pro 99.0 1.5E-07 3.3E-12 97.5 25.4 229 468-702 40-281 (296)
80 KOG4162 Predicted calmodulin-b 99.0 7.3E-06 1.6E-10 89.1 37.2 439 212-693 319-789 (799)
81 KOG1174 Anaphase-promoting com 99.0 7.9E-06 1.7E-10 82.1 33.6 281 452-766 230-519 (564)
82 KOG1127 TPR repeat-containing 98.9 1.6E-05 3.4E-10 88.7 35.9 558 114-719 493-1102(1238)
83 KOG3785 Uncharacterized conser 98.8 5.7E-06 1.2E-10 81.3 26.8 378 326-723 65-492 (557)
84 COG3063 PilF Tfp pilus assembl 98.8 1.6E-06 3.4E-11 80.8 21.7 198 492-693 38-242 (250)
85 KOG2376 Signal recognition par 98.8 3E-05 6.5E-10 81.9 32.9 451 44-551 13-518 (652)
86 KOG1129 TPR repeat-containing 98.8 4.3E-07 9.4E-12 88.1 16.8 223 426-653 226-456 (478)
87 KOG3617 WD40 and TPR repeat-co 98.7 0.00018 3.9E-09 78.6 37.5 60 111-173 724-785 (1416)
88 KOG3617 WD40 and TPR repeat-co 98.7 0.00011 2.5E-09 80.1 34.6 136 53-204 738-882 (1416)
89 KOG1127 TPR repeat-containing 98.7 0.00047 1E-08 77.4 39.9 178 59-243 474-656 (1238)
90 KOG1125 TPR repeat-containing 98.7 4.2E-07 9.2E-12 95.4 15.2 214 501-718 297-524 (579)
91 KOG1156 N-terminal acetyltrans 98.7 0.00027 5.8E-09 75.8 35.4 408 230-685 54-509 (700)
92 PF04733 Coatomer_E: Coatomer 98.7 7.3E-07 1.6E-11 90.9 16.2 147 565-720 112-264 (290)
93 cd05804 StaR_like StaR_like; a 98.7 3.3E-05 7.1E-10 83.3 30.2 257 463-721 52-336 (355)
94 KOG1156 N-terminal acetyltrans 98.7 0.0013 2.7E-08 70.8 44.1 580 89-720 18-687 (700)
95 PF12569 NARP1: NMDA receptor- 98.6 1.1E-05 2.5E-10 88.4 26.0 95 629-723 197-293 (517)
96 PF12569 NARP1: NMDA receptor- 98.6 3.4E-05 7.4E-10 84.7 28.7 246 396-652 12-288 (517)
97 KOG0624 dsRNA-activated protei 98.6 5.9E-05 1.3E-09 74.2 26.6 312 353-694 39-377 (504)
98 KOG0548 Molecular co-chaperone 98.6 7.3E-05 1.6E-09 78.4 27.7 371 327-721 11-455 (539)
99 KOG1914 mRNA cleavage and poly 98.5 0.0012 2.7E-08 69.3 35.4 175 470-645 347-529 (656)
100 PRK04841 transcriptional regul 98.5 7.9E-05 1.7E-09 91.4 32.1 294 427-720 413-759 (903)
101 PRK15359 type III secretion sy 98.5 1.7E-06 3.8E-11 78.6 13.1 122 576-704 14-138 (144)
102 PRK15363 pathogenicity island 98.5 2.6E-06 5.6E-11 75.8 13.5 119 625-766 34-154 (157)
103 KOG1128 Uncharacterized conser 98.5 3.5E-06 7.6E-11 91.0 17.0 219 419-687 394-616 (777)
104 PF04733 Coatomer_E: Coatomer 98.5 4.8E-06 1E-10 85.0 16.7 155 531-692 109-270 (290)
105 TIGR03302 OM_YfiO outer membra 98.5 1.3E-05 2.9E-10 80.6 19.9 180 522-721 31-232 (235)
106 PRK10370 formate-dependent nit 98.5 1.2E-05 2.6E-10 77.4 18.2 96 626-721 73-173 (198)
107 cd05804 StaR_like StaR_like; a 98.5 0.00028 6.1E-09 76.0 30.7 195 493-688 118-337 (355)
108 PRK04841 transcriptional regul 98.4 0.0014 2.9E-08 80.6 40.1 409 264-691 291-764 (903)
109 PRK15359 type III secretion sy 98.4 6.1E-06 1.3E-10 75.1 14.6 99 621-721 21-121 (144)
110 PLN02789 farnesyltranstransfer 98.4 5.7E-05 1.2E-09 78.2 23.2 211 504-719 52-300 (320)
111 PF12854 PPR_1: PPR repeat 98.4 4.2E-07 9E-12 58.6 4.3 33 519-551 2-34 (34)
112 KOG1070 rRNA processing protei 98.4 2.4E-05 5.2E-10 90.2 21.0 207 512-723 1447-1665(1710)
113 PF12854 PPR_1: PPR repeat 98.4 4.2E-07 9E-12 58.6 3.6 32 108-139 2-33 (34)
114 KOG0548 Molecular co-chaperone 98.4 0.00027 5.8E-09 74.3 25.6 244 460-714 230-482 (539)
115 KOG2053 Mitochondrial inherita 98.3 0.012 2.5E-07 66.2 40.4 161 491-656 438-609 (932)
116 KOG4340 Uncharacterized conser 98.3 5.5E-05 1.2E-09 72.9 17.5 306 387-716 9-334 (459)
117 KOG0624 dsRNA-activated protei 98.3 0.0009 2E-08 66.1 26.1 301 323-653 43-368 (504)
118 TIGR03302 OM_YfiO outer membra 98.3 4.6E-05 1E-09 76.6 18.0 183 486-690 30-235 (235)
119 KOG4340 Uncharacterized conser 98.2 0.00038 8.2E-09 67.3 21.6 181 532-720 249-442 (459)
120 COG4783 Putative Zn-dependent 98.2 0.00042 9E-09 72.3 23.4 121 596-718 312-434 (484)
121 KOG1125 TPR repeat-containing 98.2 6.2E-05 1.3E-09 79.6 17.1 211 402-617 299-525 (579)
122 PRK15179 Vi polysaccharide bio 98.2 0.00012 2.7E-09 83.6 21.1 187 490-696 29-226 (694)
123 COG4783 Putative Zn-dependent 98.2 0.00037 8E-09 72.6 22.4 140 561-722 312-455 (484)
124 TIGR02552 LcrH_SycD type III s 98.2 4.5E-05 9.8E-10 69.0 14.2 94 627-720 18-113 (135)
125 KOG1128 Uncharacterized conser 98.2 6.6E-05 1.4E-09 81.5 16.6 184 520-718 394-579 (777)
126 COG5010 TadD Flp pilus assembl 98.2 0.00013 2.8E-09 69.9 16.7 134 586-721 62-197 (257)
127 PRK15179 Vi polysaccharide bio 98.1 0.00038 8.2E-09 79.7 23.5 189 460-665 34-229 (694)
128 COG5010 TadD Flp pilus assembl 98.1 0.00027 5.9E-09 67.7 18.3 153 528-683 70-227 (257)
129 PLN02789 farnesyltranstransfer 98.1 0.0016 3.5E-08 67.6 25.1 222 461-689 44-304 (320)
130 PRK10370 formate-dependent nit 98.1 0.0004 8.7E-09 66.9 19.2 154 532-698 24-184 (198)
131 TIGR00756 PPR pentatricopeptid 98.1 6.3E-06 1.4E-10 54.1 4.6 35 146-180 1-35 (35)
132 TIGR00756 PPR pentatricopeptid 98.1 5.8E-06 1.3E-10 54.3 4.3 35 249-283 1-35 (35)
133 KOG1070 rRNA processing protei 98.1 0.00065 1.4E-08 79.0 22.9 196 489-688 1458-1664(1710)
134 PRK14720 transcript cleavage f 98.0 0.00072 1.6E-08 78.1 21.7 214 452-703 29-268 (906)
135 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00011 2.4E-09 77.5 13.6 120 595-719 174-295 (395)
136 KOG3081 Vesicle coat complex C 97.9 0.0041 8.8E-08 59.8 22.2 155 529-720 113-270 (299)
137 PF13812 PPR_3: Pentatricopept 97.9 1.6E-05 3.5E-10 51.6 4.1 34 145-178 1-34 (34)
138 PF13812 PPR_3: Pentatricopept 97.9 1.8E-05 3.9E-10 51.4 4.1 34 248-281 1-34 (34)
139 KOG0550 Molecular chaperone (D 97.8 0.0009 2E-08 68.0 16.7 160 556-720 169-349 (486)
140 TIGR02552 LcrH_SycD type III s 97.8 0.0005 1.1E-08 62.1 13.8 115 577-695 5-122 (135)
141 KOG3060 Uncharacterized conser 97.8 0.0031 6.8E-08 60.1 18.9 168 526-696 54-229 (289)
142 KOG0553 TPR repeat-containing 97.8 0.00021 4.6E-09 69.8 11.2 101 564-701 90-192 (304)
143 KOG3060 Uncharacterized conser 97.8 0.0032 7E-08 60.0 18.3 160 557-720 54-219 (289)
144 PRK14720 transcript cleavage f 97.8 0.0083 1.8E-07 69.7 25.5 89 488-591 115-203 (906)
145 PLN03088 SGT1, suppressor of 97.8 0.00028 6.2E-09 75.0 13.1 85 636-720 12-98 (356)
146 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00083 1.8E-08 71.0 16.3 125 526-655 171-297 (395)
147 PF13414 TPR_11: TPR repeat; P 97.7 8.8E-05 1.9E-09 57.7 6.2 64 657-720 2-66 (69)
148 PF09976 TPR_21: Tetratricopep 97.7 0.0011 2.4E-08 60.6 14.2 58 557-617 14-75 (145)
149 PF01535 PPR: PPR repeat; Int 97.7 4.5E-05 9.7E-10 48.3 3.5 31 146-176 1-31 (31)
150 cd00189 TPR Tetratricopeptide 97.7 0.00033 7.2E-09 58.3 10.1 92 629-720 3-96 (100)
151 PF12895 Apc3: Anaphase-promot 97.7 5.2E-05 1.1E-09 61.7 4.5 78 639-717 2-83 (84)
152 PF01535 PPR: PPR repeat; Int 97.6 5.5E-05 1.2E-09 47.9 3.4 31 249-279 1-31 (31)
153 PF09976 TPR_21: Tetratricopep 97.6 0.0026 5.6E-08 58.1 15.6 51 563-613 56-108 (145)
154 KOG0553 TPR repeat-containing 97.6 0.00032 6.8E-09 68.7 9.5 88 633-720 88-177 (304)
155 PRK15331 chaperone protein Sic 97.6 0.0013 2.9E-08 59.0 12.6 88 633-720 44-133 (165)
156 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.00091 2E-08 58.7 11.6 89 632-720 8-104 (119)
157 PF13432 TPR_16: Tetratricopep 97.6 0.00021 4.5E-09 54.8 6.2 57 664-720 3-59 (65)
158 PRK10153 DNA-binding transcrip 97.6 0.0028 6E-08 70.4 17.2 43 552-596 334-382 (517)
159 PF04840 Vps16_C: Vps16, C-ter 97.5 0.098 2.1E-06 54.3 27.2 124 527-670 180-303 (319)
160 KOG3081 Vesicle coat complex C 97.5 0.014 3.1E-07 56.2 19.1 137 477-620 96-237 (299)
161 KOG1914 mRNA cleavage and poly 97.5 0.18 3.9E-06 53.8 33.0 208 506-716 310-534 (656)
162 KOG2280 Vacuolar assembly/sort 97.5 0.22 4.7E-06 55.3 30.2 342 276-651 425-795 (829)
163 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0014 3.1E-08 57.4 11.8 102 594-695 6-113 (119)
164 PF13431 TPR_17: Tetratricopep 97.4 7.9E-05 1.7E-09 47.9 2.0 33 680-712 1-33 (34)
165 PF14559 TPR_19: Tetratricopep 97.4 0.00034 7.4E-09 54.2 6.0 52 669-720 2-53 (68)
166 KOG2053 Mitochondrial inherita 97.4 0.36 7.8E-06 54.8 35.0 134 88-228 19-156 (932)
167 PRK02603 photosystem I assembl 97.4 0.0039 8.5E-08 58.9 14.3 130 554-707 34-166 (172)
168 COG3898 Uncharacterized membra 97.4 0.19 4.2E-06 51.3 28.2 281 436-730 97-399 (531)
169 CHL00033 ycf3 photosystem I as 97.4 0.0015 3.3E-08 61.5 10.6 92 627-718 36-139 (168)
170 PRK02603 photosystem I assembl 97.4 0.0019 4.1E-08 61.0 11.2 79 629-707 38-121 (172)
171 PLN03088 SGT1, suppressor of 97.4 0.0025 5.4E-08 67.9 13.2 76 630-705 40-117 (356)
172 KOG1130 Predicted G-alpha GTPa 97.3 0.0015 3.2E-08 66.2 10.0 257 464-720 27-343 (639)
173 PRK15363 pathogenicity island 97.2 0.012 2.5E-07 52.9 13.4 97 526-624 37-137 (157)
174 PF13371 TPR_9: Tetratricopept 97.2 0.0011 2.4E-08 52.1 6.3 57 665-721 2-58 (73)
175 cd00189 TPR Tetratricopeptide 97.2 0.0042 9.2E-08 51.4 10.4 96 558-689 3-99 (100)
176 COG4235 Cytochrome c biogenesi 97.2 0.0079 1.7E-07 59.6 13.3 100 625-724 155-259 (287)
177 COG4700 Uncharacterized protei 97.2 0.01 2.2E-07 53.7 12.5 124 586-713 85-214 (251)
178 PF13432 TPR_16: Tetratricopep 97.1 0.00076 1.6E-08 51.6 4.9 61 632-692 3-65 (65)
179 CHL00033 ycf3 photosystem I as 97.1 0.0087 1.9E-07 56.3 13.1 63 555-617 35-99 (168)
180 PF05843 Suf: Suppressor of fo 97.1 0.016 3.5E-07 59.4 15.9 136 556-694 2-143 (280)
181 PF04840 Vps16_C: Vps16, C-ter 97.1 0.46 9.9E-06 49.4 27.4 108 425-548 179-286 (319)
182 PF14938 SNAP: Soluble NSF att 97.1 0.019 4.2E-07 59.1 16.3 20 461-480 42-61 (282)
183 PF14559 TPR_19: Tetratricopep 97.1 0.00082 1.8E-08 52.0 4.4 63 638-700 3-67 (68)
184 KOG1538 Uncharacterized conser 97.0 0.14 3.1E-06 55.3 21.8 96 530-657 709-805 (1081)
185 COG4700 Uncharacterized protei 97.0 0.06 1.3E-06 48.9 16.0 98 621-718 84-186 (251)
186 KOG1538 Uncharacterized conser 97.0 0.11 2.3E-06 56.3 20.4 81 387-476 746-826 (1081)
187 PF14938 SNAP: Soluble NSF att 97.0 0.072 1.6E-06 54.9 19.1 125 528-652 118-263 (282)
188 PF10037 MRP-S27: Mitochondria 96.9 0.019 4.2E-07 61.2 14.1 117 486-602 63-185 (429)
189 PF13414 TPR_11: TPR repeat; P 96.9 0.0025 5.5E-08 49.4 5.6 64 626-689 3-69 (69)
190 PF12895 Apc3: Anaphase-promot 96.8 0.0033 7.1E-08 51.0 6.4 80 568-651 2-83 (84)
191 KOG2796 Uncharacterized conser 96.8 0.097 2.1E-06 50.4 16.6 165 426-592 139-321 (366)
192 PRK10866 outer membrane biogen 96.8 0.093 2E-06 52.4 17.5 171 431-616 40-238 (243)
193 PF05843 Suf: Suppressor of fo 96.8 0.038 8.2E-07 56.7 15.2 126 456-583 3-135 (280)
194 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.0053 1.1E-07 64.6 8.8 66 656-721 73-141 (453)
195 PF13281 DUF4071: Domain of un 96.8 0.15 3.2E-06 53.3 19.1 160 529-691 146-338 (374)
196 PF13428 TPR_14: Tetratricopep 96.7 0.0021 4.7E-08 44.4 3.9 42 659-700 2-43 (44)
197 PRK10803 tol-pal system protei 96.7 0.01 2.2E-07 59.7 10.1 92 629-720 146-245 (263)
198 PRK10153 DNA-binding transcrip 96.7 0.064 1.4E-06 59.8 17.4 57 558-616 423-479 (517)
199 PF12688 TPR_5: Tetratrico pep 96.7 0.041 8.8E-07 47.6 12.3 92 561-652 7-101 (120)
200 PF08579 RPM2: Mitochondrial r 96.7 0.026 5.6E-07 46.9 10.3 80 457-536 28-116 (120)
201 PF06239 ECSIT: Evolutionarily 96.7 0.031 6.7E-07 52.7 12.2 117 486-617 44-166 (228)
202 KOG0543 FKBP-type peptidyl-pro 96.7 0.013 2.9E-07 60.2 10.6 84 658-767 257-340 (397)
203 PF10037 MRP-S27: Mitochondria 96.7 0.027 5.9E-07 60.0 13.3 120 383-502 61-186 (429)
204 PRK10866 outer membrane biogen 96.6 0.13 2.8E-06 51.4 17.1 173 527-720 35-240 (243)
205 PF12688 TPR_5: Tetratrico pep 96.6 0.015 3.2E-07 50.3 8.9 83 635-717 10-100 (120)
206 PRK10803 tol-pal system protei 96.6 0.055 1.2E-06 54.4 14.0 103 558-693 146-252 (263)
207 KOG2041 WD40 repeat protein [G 96.5 0.28 6.1E-06 53.7 18.9 192 502-725 747-956 (1189)
208 COG3898 Uncharacterized membra 96.5 1.3 2.9E-05 45.5 26.9 266 384-661 114-398 (531)
209 KOG2796 Uncharacterized conser 96.4 0.26 5.7E-06 47.5 16.5 144 557-700 179-328 (366)
210 PF03704 BTAD: Bacterial trans 96.4 0.052 1.1E-06 49.6 12.1 107 600-720 16-124 (146)
211 PF13371 TPR_9: Tetratricopept 96.4 0.0097 2.1E-07 46.7 6.3 65 634-698 3-69 (73)
212 PF06239 ECSIT: Evolutionarily 96.3 0.033 7.2E-07 52.5 10.0 97 544-641 34-153 (228)
213 KOG0550 Molecular chaperone (D 96.3 1.6 3.5E-05 45.3 22.5 227 463-713 178-435 (486)
214 KOG4555 TPR repeat-containing 96.3 0.029 6.4E-07 47.6 8.5 89 634-722 51-145 (175)
215 PF08579 RPM2: Mitochondrial r 96.2 0.083 1.8E-06 44.0 10.7 80 558-638 28-116 (120)
216 KOG1130 Predicted G-alpha GTPa 96.2 0.16 3.4E-06 52.1 14.7 304 362-709 27-372 (639)
217 COG0457 NrfG FOG: TPR repeat [ 96.0 1.8 3.9E-05 42.6 27.6 193 524-720 59-264 (291)
218 KOG2041 WD40 repeat protein [G 95.9 3.9 8.5E-05 45.3 28.1 273 337-649 750-1044(1189)
219 PF13424 TPR_12: Tetratricopep 95.7 0.017 3.7E-07 46.0 4.6 60 660-719 7-73 (78)
220 KOG1941 Acetylcholine receptor 95.6 0.21 4.5E-06 50.5 12.5 222 465-686 17-274 (518)
221 PF09205 DUF1955: Domain of un 95.5 1.2 2.7E-05 38.3 14.8 140 566-724 13-152 (161)
222 PF13424 TPR_12: Tetratricopep 95.4 0.025 5.4E-07 45.0 4.4 30 658-687 46-75 (78)
223 PF04184 ST7: ST7 protein; In 95.3 0.95 2.1E-05 48.4 16.5 103 592-694 261-382 (539)
224 PF07079 DUF1347: Protein of u 95.3 4.8 0.0001 42.5 34.4 72 646-718 444-521 (549)
225 PF03704 BTAD: Bacterial trans 95.2 0.34 7.4E-06 44.1 12.2 71 557-629 64-139 (146)
226 PF13525 YfiO: Outer membrane 95.2 2.2 4.7E-05 41.4 18.2 161 532-713 13-199 (203)
227 PF12921 ATP13: Mitochondrial 95.0 0.28 6E-06 43.0 10.2 48 586-633 48-95 (126)
228 PLN03098 LPA1 LOW PSII ACCUMUL 95.0 0.27 5.8E-06 52.2 11.7 70 38-107 70-141 (453)
229 PF04184 ST7: ST7 protein; In 95.0 0.87 1.9E-05 48.6 15.3 190 566-773 179-381 (539)
230 KOG0543 FKBP-type peptidyl-pro 95.0 0.23 5E-06 51.4 10.9 137 562-720 215-354 (397)
231 PF00515 TPR_1: Tetratricopept 95.0 0.044 9.5E-07 35.2 3.9 33 659-691 2-34 (34)
232 PRK11906 transcriptional regul 95.0 1.1 2.4E-05 47.8 16.1 142 571-716 274-431 (458)
233 PF13525 YfiO: Outer membrane 94.9 1.5 3.2E-05 42.5 16.3 51 433-483 15-71 (203)
234 COG0457 NrfG FOG: TPR repeat [ 94.9 4.3 9.3E-05 39.8 26.1 197 489-690 59-268 (291)
235 PF07719 TPR_2: Tetratricopept 94.8 0.072 1.6E-06 34.1 4.6 33 659-691 2-34 (34)
236 PF07079 DUF1347: Protein of u 94.7 6.9 0.00015 41.5 36.5 381 259-663 90-530 (549)
237 KOG1920 IkappaB kinase complex 94.7 13 0.00027 44.5 24.7 160 337-555 896-1057(1265)
238 PF12921 ATP13: Mitochondrial 94.6 0.47 1E-05 41.6 10.6 54 619-672 45-102 (126)
239 KOG2114 Vacuolar assembly/sort 94.5 11 0.00024 43.1 24.4 177 46-246 337-519 (933)
240 PRK11906 transcriptional regul 94.5 0.6 1.3E-05 49.7 12.9 115 606-720 274-400 (458)
241 PF10300 DUF3808: Protein of u 94.4 2.6 5.6E-05 46.8 18.4 114 604-720 247-375 (468)
242 COG4235 Cytochrome c biogenesi 94.3 1.2 2.5E-05 44.6 13.7 102 590-693 156-262 (287)
243 PF13281 DUF4071: Domain of un 94.2 4.8 0.0001 42.4 18.5 71 429-499 147-227 (374)
244 KOG4234 TPR repeat-containing 94.1 0.31 6.6E-06 45.1 8.5 89 634-722 103-198 (271)
245 smart00299 CLH Clathrin heavy 94.1 2.1 4.6E-05 38.5 14.3 120 530-669 13-136 (140)
246 COG1729 Uncharacterized protei 93.9 0.39 8.5E-06 47.3 9.4 64 655-720 177-243 (262)
247 KOG2114 Vacuolar assembly/sort 93.6 17 0.00036 41.8 28.2 121 115-244 336-458 (933)
248 COG3118 Thioredoxin domain-con 93.6 5.6 0.00012 39.8 16.6 153 563-718 142-299 (304)
249 KOG1941 Acetylcholine receptor 93.5 2.3 5E-05 43.3 14.0 218 435-652 18-272 (518)
250 PF13512 TPR_18: Tetratricopep 93.5 1.4 3E-05 39.1 11.2 72 636-707 20-99 (142)
251 COG4105 ComL DNA uptake lipopr 93.4 6.3 0.00014 38.7 16.5 54 666-719 175-231 (254)
252 PF10300 DUF3808: Protein of u 93.4 2 4.2E-05 47.7 15.1 115 537-653 246-374 (468)
253 PF04053 Coatomer_WDAD: Coatom 93.4 1 2.2E-05 49.1 12.6 132 564-722 270-403 (443)
254 PF13512 TPR_18: Tetratricopep 93.3 2.4 5.1E-05 37.7 12.3 112 564-692 19-133 (142)
255 KOG2610 Uncharacterized conser 93.3 2.5 5.4E-05 42.6 13.7 147 568-717 116-272 (491)
256 KOG1585 Protein required for f 93.1 8.9 0.00019 37.2 17.1 84 631-715 155-250 (308)
257 PF02259 FAT: FAT domain; Int 92.9 9.8 0.00021 40.6 19.7 150 553-704 144-304 (352)
258 KOG3941 Intermediate in Toll s 92.9 0.77 1.7E-05 44.9 9.3 110 543-653 53-186 (406)
259 COG4105 ComL DNA uptake lipopr 92.9 10 0.00023 37.2 18.2 157 535-692 45-238 (254)
260 COG4785 NlpI Lipoprotein NlpI, 92.7 5.8 0.00013 37.6 14.4 177 537-720 78-265 (297)
261 COG1729 Uncharacterized protei 92.7 1.2 2.6E-05 44.0 10.6 91 558-651 145-240 (262)
262 PF09205 DUF1955: Domain of un 92.2 6.4 0.00014 34.1 12.8 59 558-617 89-147 (161)
263 PF04097 Nic96: Nup93/Nic96; 92.2 24 0.00053 40.8 22.2 87 461-552 265-355 (613)
264 KOG4648 Uncharacterized conser 92.1 0.8 1.7E-05 46.0 8.6 95 562-692 104-199 (536)
265 smart00299 CLH Clathrin heavy 92.0 8.7 0.00019 34.5 15.2 130 554-703 6-136 (140)
266 KOG4555 TPR repeat-containing 91.8 3.7 8E-05 35.4 10.9 86 564-651 52-140 (175)
267 KOG3941 Intermediate in Toll s 91.7 1.5 3.2E-05 43.1 9.6 98 300-416 89-187 (406)
268 COG5107 RNA14 Pre-mRNA 3'-end 91.5 21 0.00046 37.9 31.2 57 491-548 399-456 (660)
269 PF13181 TPR_8: Tetratricopept 91.4 0.31 6.8E-06 31.0 3.5 31 660-690 3-33 (34)
270 KOG2066 Vacuolar assembly/sort 91.3 32 0.00069 39.4 25.3 89 572-672 611-704 (846)
271 KOG4648 Uncharacterized conser 91.1 0.75 1.6E-05 46.2 7.3 88 633-720 104-193 (536)
272 PF08631 SPO22: Meiosis protei 91.0 20 0.00044 36.7 26.1 97 491-589 86-191 (278)
273 PRK15331 chaperone protein Sic 90.8 5.9 0.00013 36.1 12.1 82 535-617 48-132 (165)
274 COG3118 Thioredoxin domain-con 90.4 21 0.00046 35.9 17.4 115 499-617 144-263 (304)
275 PF13170 DUF4003: Protein of u 90.0 9.4 0.0002 39.3 14.5 126 507-635 80-226 (297)
276 PF04053 Coatomer_WDAD: Coatom 89.9 3.8 8.3E-05 44.8 12.2 58 523-585 346-403 (443)
277 KOG2610 Uncharacterized conser 89.6 3.4 7.3E-05 41.7 10.3 114 603-718 116-235 (491)
278 KOG1258 mRNA processing protei 89.5 38 0.00083 37.6 29.1 343 363-710 90-493 (577)
279 PF07035 Mic1: Colon cancer-as 89.3 5.6 0.00012 36.6 10.9 137 165-313 14-150 (167)
280 KOG1258 mRNA processing protei 89.2 40 0.00087 37.4 27.3 179 423-603 297-488 (577)
281 PF07035 Mic1: Colon cancer-as 89.2 13 0.00027 34.4 13.1 131 63-206 14-146 (167)
282 PRK09687 putative lyase; Provi 89.1 29 0.00062 35.5 25.0 136 522-668 140-277 (280)
283 PF13176 TPR_7: Tetratricopept 89.0 0.89 1.9E-05 29.5 4.1 26 557-582 1-26 (36)
284 KOG2280 Vacuolar assembly/sort 88.7 49 0.0011 37.7 34.5 328 356-718 441-796 (829)
285 PF13176 TPR_7: Tetratricopept 88.5 0.69 1.5E-05 30.0 3.4 25 661-685 2-26 (36)
286 PF00515 TPR_1: Tetratricopept 87.7 1 2.3E-05 28.6 3.9 31 557-589 3-33 (34)
287 PF13428 TPR_14: Tetratricopep 87.5 1.9 4E-05 29.5 5.2 32 557-590 3-34 (44)
288 KOG1920 IkappaB kinase complex 87.4 77 0.0017 38.4 23.9 55 597-653 972-1026(1265)
289 PF02259 FAT: FAT domain; Int 86.6 40 0.00087 35.8 17.9 64 657-720 145-212 (352)
290 PF10602 RPN7: 26S proteasome 86.6 15 0.00033 34.5 12.6 59 525-583 37-101 (177)
291 KOG4279 Serine/threonine prote 86.6 8.2 0.00018 43.3 11.8 183 456-691 203-399 (1226)
292 COG3629 DnrI DNA-binding trans 86.5 4.9 0.00011 40.5 9.5 76 524-599 153-236 (280)
293 PF09613 HrpB1_HrpK: Bacterial 85.9 4.4 9.6E-05 36.7 8.0 71 638-708 22-94 (160)
294 PRK10941 hypothetical protein; 85.5 5.2 0.00011 40.3 9.3 61 660-720 183-243 (269)
295 TIGR02561 HrpB1_HrpK type III 85.4 4.7 0.0001 35.9 7.7 53 670-722 22-74 (153)
296 PF11207 DUF2989: Protein of u 85.3 4.2 9.2E-05 38.4 7.8 69 643-711 123-197 (203)
297 PRK12798 chemotaxis protein; R 85.1 57 0.0012 34.8 22.2 205 537-768 125-347 (421)
298 COG5107 RNA14 Pre-mRNA 3'-end 84.8 59 0.0013 34.7 32.6 142 555-700 397-544 (660)
299 PF13170 DUF4003: Protein of u 84.5 34 0.00074 35.2 14.8 133 265-430 79-224 (297)
300 KOG1550 Extracellular protein 84.3 83 0.0018 36.0 20.7 77 641-720 454-537 (552)
301 PF14853 Fis1_TPR_C: Fis1 C-te 83.8 6.8 0.00015 28.1 6.6 50 694-769 3-52 (53)
302 COG4649 Uncharacterized protei 83.6 25 0.00055 32.2 11.4 48 436-483 71-123 (221)
303 PF09613 HrpB1_HrpK: Bacterial 83.5 33 0.00071 31.3 12.4 86 601-689 21-108 (160)
304 PF14853 Fis1_TPR_C: Fis1 C-te 83.3 2.5 5.3E-05 30.3 4.2 35 663-697 6-40 (53)
305 TIGR02508 type_III_yscG type I 83.3 14 0.00031 30.2 8.8 87 505-595 21-107 (115)
306 COG2976 Uncharacterized protei 83.2 42 0.0009 31.7 13.7 91 596-691 95-192 (207)
307 PF10602 RPN7: 26S proteasome 82.9 13 0.00029 34.9 10.4 96 556-653 37-140 (177)
308 PF07719 TPR_2: Tetratricopept 82.7 2.6 5.5E-05 26.6 3.9 31 557-589 3-33 (34)
309 cd00923 Cyt_c_Oxidase_Va Cytoc 82.5 12 0.00026 30.5 8.1 53 645-697 29-81 (103)
310 KOG1585 Protein required for f 82.3 26 0.00057 34.1 11.7 74 632-718 97-176 (308)
311 KOG3364 Membrane protein invol 82.3 15 0.00033 32.1 9.2 48 673-720 50-99 (149)
312 PF08631 SPO22: Meiosis protei 82.1 64 0.0014 33.0 23.0 98 390-488 86-191 (278)
313 PF04097 Nic96: Nup93/Nic96; 81.9 1.1E+02 0.0023 35.6 23.3 45 251-296 114-158 (613)
314 KOG4570 Uncharacterized conser 81.7 11 0.00024 37.9 9.4 97 518-618 58-163 (418)
315 PF00637 Clathrin: Region in C 81.6 0.76 1.6E-05 41.6 1.5 84 84-171 13-96 (143)
316 cd00923 Cyt_c_Oxidase_Va Cytoc 81.3 12 0.00027 30.4 7.8 63 570-634 22-84 (103)
317 COG4649 Uncharacterized protei 81.0 46 0.00099 30.7 15.7 121 565-686 68-195 (221)
318 KOG0545 Aryl-hydrocarbon recep 80.7 50 0.0011 32.3 12.9 53 668-720 240-292 (329)
319 smart00028 TPR Tetratricopepti 80.7 3.1 6.7E-05 25.1 3.9 31 660-690 3-33 (34)
320 PF07721 TPR_4: Tetratricopept 80.6 2.8 6.2E-05 24.7 3.2 24 693-716 2-25 (26)
321 COG3947 Response regulator con 80.6 61 0.0013 32.6 13.8 54 666-719 287-340 (361)
322 KOG1308 Hsp70-interacting prot 80.4 0.89 1.9E-05 46.0 1.5 90 638-727 126-217 (377)
323 PF02284 COX5A: Cytochrome c o 80.2 12 0.00026 30.9 7.5 60 573-634 28-87 (108)
324 KOG4234 TPR repeat-containing 80.2 32 0.00069 32.4 11.1 53 563-617 103-161 (271)
325 KOG0890 Protein kinase of the 80.0 2.2E+02 0.0047 37.8 28.7 62 658-721 1670-1731(2382)
326 PF13431 TPR_17: Tetratricopep 80.0 2.9 6.4E-05 26.7 3.3 24 521-544 10-33 (34)
327 PF06552 TOM20_plant: Plant sp 79.9 15 0.00033 34.0 9.0 32 571-604 51-83 (186)
328 COG3629 DnrI DNA-binding trans 79.9 8.1 0.00017 39.0 8.0 62 659-720 154-215 (280)
329 PF13174 TPR_6: Tetratricopept 79.7 3.3 7.1E-05 25.8 3.6 27 664-690 6-32 (33)
330 PF13934 ELYS: Nuclear pore co 79.1 38 0.00083 33.3 12.5 106 558-672 79-186 (226)
331 PF02284 COX5A: Cytochrome c o 78.4 21 0.00046 29.5 8.3 53 646-698 33-85 (108)
332 PF13181 TPR_8: Tetratricopept 78.3 3.4 7.5E-05 26.0 3.4 27 557-583 3-29 (34)
333 PF13374 TPR_10: Tetratricopep 77.9 4 8.7E-05 27.1 3.9 28 693-720 3-30 (42)
334 PRK11619 lytic murein transgly 77.2 1.5E+02 0.0033 34.5 31.3 126 568-700 254-384 (644)
335 KOG1586 Protein required for f 77.0 76 0.0016 30.9 13.7 62 631-692 118-188 (288)
336 PF13374 TPR_10: Tetratricopep 76.8 5.1 0.00011 26.6 4.1 28 556-583 3-30 (42)
337 KOG1586 Protein required for f 76.7 77 0.0017 30.9 20.6 36 668-703 204-242 (288)
338 KOG2066 Vacuolar assembly/sort 76.5 1.5E+02 0.0033 34.2 23.8 72 220-295 396-467 (846)
339 KOG4570 Uncharacterized conser 76.5 24 0.00052 35.6 9.9 101 313-418 59-165 (418)
340 PRK13800 putative oxidoreducta 75.1 2.1E+02 0.0046 35.1 23.3 222 444-685 625-847 (897)
341 PF13174 TPR_6: Tetratricopept 74.6 4.2 9.1E-05 25.3 3.0 27 694-720 2-28 (33)
342 KOG0276 Vesicle coat complex C 74.4 38 0.00081 37.6 11.4 147 536-716 598-745 (794)
343 KOG0276 Vesicle coat complex C 73.8 26 0.00056 38.8 10.1 44 536-581 649-692 (794)
344 PF00637 Clathrin: Region in C 73.7 1.6 3.4E-05 39.5 1.2 53 496-548 14-66 (143)
345 PF07163 Pex26: Pex26 protein; 73.7 98 0.0021 31.1 13.1 117 52-168 44-181 (309)
346 KOG1464 COP9 signalosome, subu 73.3 1E+02 0.0022 30.6 17.6 242 437-688 41-329 (440)
347 COG2909 MalT ATP-dependent tra 73.3 2E+02 0.0043 34.0 24.5 181 537-721 428-647 (894)
348 PF06552 TOM20_plant: Plant sp 73.2 14 0.0003 34.2 6.9 45 674-718 51-99 (186)
349 PF09477 Type_III_YscG: Bacter 72.4 41 0.0009 28.1 8.6 87 504-594 21-107 (116)
350 PRK09687 putative lyase; Provi 72.4 1.2E+02 0.0026 31.1 25.5 137 453-601 141-278 (280)
351 KOG0376 Serine-threonine phosp 72.3 8.6 0.00019 41.2 6.1 87 634-720 12-100 (476)
352 PF14561 TPR_20: Tetratricopep 70.2 9.1 0.0002 31.2 4.7 43 678-720 8-50 (90)
353 TIGR02561 HrpB1_HrpK type III 70.0 63 0.0014 29.0 10.0 19 123-141 54-72 (153)
354 PF11768 DUF3312: Protein of u 70.0 47 0.001 36.7 11.1 127 528-678 412-543 (545)
355 KOG4507 Uncharacterized conser 69.7 12 0.00027 40.8 6.6 72 632-703 648-721 (886)
356 PF04190 DUF410: Protein of un 68.6 1.1E+02 0.0023 31.0 13.0 106 435-551 2-117 (260)
357 KOG0403 Neoplastic transformat 68.6 1.2E+02 0.0026 32.5 13.1 59 114-172 179-241 (645)
358 COG2976 Uncharacterized protei 68.3 1.1E+02 0.0024 29.0 12.6 87 562-653 96-186 (207)
359 KOG1550 Extracellular protein 67.7 2.2E+02 0.0048 32.6 16.8 53 673-727 379-432 (552)
360 PRK15180 Vi polysaccharide bio 67.7 39 0.00085 36.1 9.6 119 568-690 302-423 (831)
361 COG4455 ImpE Protein of avirul 67.6 1.2E+02 0.0026 29.2 11.8 122 558-692 4-139 (273)
362 PRK15180 Vi polysaccharide bio 67.2 55 0.0012 35.1 10.5 139 602-745 301-442 (831)
363 PHA02875 ankyrin repeat protei 65.9 2.1E+02 0.0045 31.3 17.1 140 50-202 6-154 (413)
364 PF15469 Sec5: Exocyst complex 64.3 1.3E+02 0.0028 28.4 12.1 87 595-697 91-178 (182)
365 PF09986 DUF2225: Uncharacteri 64.3 31 0.00067 33.6 7.9 63 658-720 118-193 (214)
366 PF09670 Cas_Cas02710: CRISPR- 62.4 1.1E+02 0.0024 32.9 12.4 51 566-617 142-196 (379)
367 PF10345 Cohesin_load: Cohesin 62.3 3E+02 0.0066 32.0 33.5 23 697-719 582-604 (608)
368 PF11207 DUF2989: Protein of u 62.1 63 0.0014 30.8 9.0 73 572-645 123-197 (203)
369 KOG3807 Predicted membrane pro 61.9 1.1E+02 0.0024 31.2 11.0 169 500-698 227-402 (556)
370 PF13929 mRNA_stabil: mRNA sta 61.7 1.9E+02 0.0041 29.4 14.6 57 420-476 199-260 (292)
371 PF04910 Tcf25: Transcriptiona 61.6 1.5E+02 0.0032 31.7 13.0 155 521-689 37-224 (360)
372 KOG0292 Vesicle coat complex C 61.5 11 0.00025 43.2 4.8 94 596-713 626-719 (1202)
373 TIGR02508 type_III_yscG type I 60.8 75 0.0016 26.3 7.9 52 431-484 47-98 (115)
374 KOG0551 Hsp90 co-chaperone CNS 59.8 36 0.00078 34.8 7.3 89 629-717 84-178 (390)
375 smart00028 TPR Tetratricopepti 59.6 18 0.00039 21.4 3.8 27 557-583 3-29 (34)
376 PF13929 mRNA_stabil: mRNA sta 59.4 2.1E+02 0.0045 29.1 14.0 54 521-574 199-257 (292)
377 KOG4642 Chaperone-dependent E3 59.4 25 0.00055 34.1 5.9 82 639-720 23-106 (284)
378 COG4455 ImpE Protein of avirul 58.9 35 0.00076 32.7 6.7 63 631-693 6-70 (273)
379 PRK13342 recombination factor 58.5 2.8E+02 0.0061 30.3 15.5 100 385-502 173-278 (413)
380 PF07720 TPR_3: Tetratricopept 57.6 25 0.00055 22.8 4.0 32 660-691 3-36 (36)
381 PRK13342 recombination factor 56.1 3.1E+02 0.0066 30.0 16.0 102 486-605 173-280 (413)
382 PF13762 MNE1: Mitochondrial s 55.9 51 0.0011 29.6 7.0 51 143-193 77-128 (145)
383 PF10579 Rapsyn_N: Rapsyn N-te 55.2 23 0.0005 27.7 4.1 45 670-714 18-65 (80)
384 PF04190 DUF410: Protein of un 54.7 2.4E+02 0.0053 28.4 18.5 125 466-609 2-140 (260)
385 PF12968 DUF3856: Domain of Un 54.1 1.3E+02 0.0028 25.9 8.5 61 658-718 55-126 (144)
386 KOG2471 TPR repeat-containing 54.1 3.3E+02 0.0072 29.8 15.7 288 380-668 9-379 (696)
387 COG5178 PRP8 U5 snRNP spliceos 53.4 12 0.00027 44.0 3.4 9 630-638 943-951 (2365)
388 KOG2063 Vacuolar assembly/sort 53.3 2.3E+02 0.0049 34.0 13.5 28 250-277 506-533 (877)
389 KOG2063 Vacuolar assembly/sort 53.2 4.8E+02 0.01 31.4 16.5 141 128-294 493-637 (877)
390 PF07163 Pex26: Pex26 protein; 52.0 1.3E+02 0.0029 30.2 9.6 18 461-478 90-107 (309)
391 KOG4642 Chaperone-dependent E3 51.6 2.1E+02 0.0046 28.1 10.6 79 537-617 23-105 (284)
392 PRK10941 hypothetical protein; 51.6 93 0.002 31.5 9.0 68 630-697 185-254 (269)
393 KOG3824 Huntingtin interacting 50.7 46 0.001 33.5 6.4 61 637-697 127-189 (472)
394 PF14561 TPR_20: Tetratricopep 50.0 1.4E+02 0.003 24.3 8.6 63 656-718 20-85 (90)
395 TIGR03504 FimV_Cterm FimV C-te 49.7 38 0.00083 23.2 4.1 25 561-585 5-29 (44)
396 TIGR02710 CRISPR-associated pr 49.7 3.3E+02 0.0072 29.1 12.9 30 563-592 138-167 (380)
397 KOG4077 Cytochrome c oxidase, 49.1 90 0.0019 27.1 6.9 59 573-633 67-125 (149)
398 KOG0403 Neoplastic transformat 48.7 3.8E+02 0.0083 29.0 20.8 75 492-569 512-588 (645)
399 COG4976 Predicted methyltransf 48.5 34 0.00074 33.0 4.9 57 635-691 4-62 (287)
400 PF14863 Alkyl_sulf_dimr: Alky 47.7 72 0.0016 28.6 6.7 67 642-711 57-123 (141)
401 PF10579 Rapsyn_N: Rapsyn N-te 47.5 42 0.00092 26.3 4.4 14 570-583 21-34 (80)
402 COG2909 MalT ATP-dependent tra 46.9 5.7E+02 0.012 30.5 25.8 217 434-651 426-684 (894)
403 smart00386 HAT HAT (Half-A-TPR 46.9 32 0.00069 20.9 3.4 29 672-700 1-29 (33)
404 KOG3824 Huntingtin interacting 46.3 52 0.0011 33.1 6.0 77 668-756 126-202 (472)
405 COG1747 Uncharacterized N-term 46.2 4.5E+02 0.0098 29.1 22.5 161 486-653 63-232 (711)
406 PF10345 Cohesin_load: Cohesin 46.1 5.4E+02 0.012 29.9 31.0 150 566-716 372-558 (608)
407 KOG4521 Nuclear pore complex, 45.9 3.4E+02 0.0073 33.3 13.0 106 530-643 926-1071(1480)
408 PF07575 Nucleopor_Nup85: Nup8 45.3 1.4E+02 0.0031 34.2 10.6 29 467-495 508-536 (566)
409 KOG1923 Rac1 GTPase effector F 45.3 35 0.00075 38.9 5.2 9 799-807 796-804 (830)
410 TIGR03504 FimV_Cterm FimV C-te 45.0 47 0.001 22.7 3.9 24 460-483 5-28 (44)
411 COG3947 Response regulator con 44.5 3.6E+02 0.0078 27.5 14.0 56 559-616 283-339 (361)
412 PHA02875 ankyrin repeat protei 44.4 4.5E+02 0.0098 28.6 19.1 108 374-489 116-230 (413)
413 cd00280 TRFH Telomeric Repeat 43.3 1.1E+02 0.0023 28.7 7.0 43 664-707 117-159 (200)
414 PF11846 DUF3366: Domain of un 43.1 77 0.0017 30.3 6.8 36 654-689 140-175 (193)
415 PRK09169 hypothetical protein; 42.7 1E+03 0.022 32.2 40.0 325 386-710 286-681 (2316)
416 cd08819 CARD_MDA5_2 Caspase ac 41.8 1.9E+02 0.004 23.4 7.4 38 536-574 48-85 (88)
417 PRK10564 maltose regulon perip 41.3 77 0.0017 32.2 6.5 39 43-81 256-295 (303)
418 PF09477 Type_III_YscG: Bacter 40.8 2.2E+02 0.0048 24.0 8.1 54 429-484 46-99 (116)
419 PF10366 Vps39_1: Vacuolar sor 40.5 1.2E+02 0.0025 25.8 6.6 28 556-583 40-67 (108)
420 KOG4077 Cytochrome c oxidase, 40.4 2.2E+02 0.0047 24.8 7.9 51 645-695 71-121 (149)
421 PF10366 Vps39_1: Vacuolar sor 40.3 1.3E+02 0.0029 25.5 6.9 40 128-173 28-67 (108)
422 PF14669 Asp_Glu_race_2: Putat 39.9 3.3E+02 0.0072 25.8 13.5 91 450-550 103-207 (233)
423 PF14689 SPOB_a: Sensor_kinase 39.9 49 0.0011 24.7 3.8 21 561-581 29-49 (62)
424 PF15161 Neuropep_like: Neurop 39.7 10 0.00022 26.8 0.1 19 815-834 10-28 (65)
425 COG5159 RPN6 26S proteasome re 39.6 4.2E+02 0.0091 26.8 13.3 158 563-720 11-193 (421)
426 KOG1498 26S proteasome regulat 39.6 5E+02 0.011 27.7 15.5 109 631-743 136-263 (439)
427 PF14689 SPOB_a: Sensor_kinase 39.0 73 0.0016 23.7 4.6 46 571-618 6-51 (62)
428 PF00244 14-3-3: 14-3-3 protei 38.8 4E+02 0.0087 26.4 11.9 157 561-718 7-195 (236)
429 COG1747 Uncharacterized N-term 38.7 5.9E+02 0.013 28.3 22.0 170 354-532 68-247 (711)
430 PF11838 ERAP1_C: ERAP1-like C 38.6 4.7E+02 0.01 27.2 18.5 100 603-702 143-246 (324)
431 PF12862 Apc5: Anaphase-promot 38.6 94 0.002 25.5 5.7 51 669-719 9-68 (94)
432 PF11663 Toxin_YhaV: Toxin wit 38.0 32 0.00069 30.1 2.8 34 565-600 105-138 (140)
433 PF11848 DUF3368: Domain of un 37.7 77 0.0017 22.2 4.2 36 154-189 11-46 (48)
434 KOG0686 COP9 signalosome, subu 37.5 5.5E+02 0.012 27.6 14.6 91 525-617 151-256 (466)
435 KOG0890 Protein kinase of the 37.3 1.2E+03 0.026 31.5 32.1 108 590-701 1670-1798(2382)
436 cd08819 CARD_MDA5_2 Caspase ac 36.9 1.7E+02 0.0036 23.7 6.3 38 435-473 48-85 (88)
437 KOG3364 Membrane protein invol 36.6 3.1E+02 0.0067 24.4 10.8 32 663-694 76-107 (149)
438 PF11846 DUF3366: Domain of un 36.6 1.1E+02 0.0024 29.1 6.8 32 586-617 140-171 (193)
439 PF13762 MNE1: Mitochondrial s 36.0 3.3E+02 0.0071 24.6 11.2 51 553-603 77-128 (145)
440 COG4785 NlpI Lipoprotein NlpI, 35.9 4.2E+02 0.0091 25.7 16.3 27 591-617 238-264 (297)
441 PF11663 Toxin_YhaV: Toxin wit 34.9 51 0.0011 28.9 3.6 32 260-293 107-138 (140)
442 PF07304 SRA1: Steroid recepto 34.5 97 0.0021 28.4 5.6 16 90-105 102-117 (157)
443 PF11848 DUF3368: Domain of un 34.2 1.1E+02 0.0023 21.4 4.5 35 52-86 11-45 (48)
444 PF11525 CopK: Copper resistan 33.9 17 0.00038 27.1 0.5 21 837-857 8-28 (73)
445 cd02679 MIT_spastin MIT: domai 33.8 22 0.00049 28.0 1.2 64 641-720 4-67 (79)
446 COG2912 Uncharacterized conser 33.8 3E+02 0.0065 27.7 9.1 57 664-720 187-243 (269)
447 PRK10564 maltose regulon perip 33.3 76 0.0017 32.3 5.0 41 557-597 259-299 (303)
448 COG5178 PRP8 U5 snRNP spliceos 32.9 41 0.00088 40.1 3.4 10 354-363 476-485 (2365)
449 TIGR01503 MthylAspMut_E methyl 32.8 67 0.0014 34.7 4.7 123 503-632 68-217 (480)
450 PF06957 COPI_C: Coatomer (COP 32.3 76 0.0016 34.3 5.1 132 565-714 214-356 (422)
451 COG2178 Predicted RNA-binding 31.6 4.6E+02 0.01 24.9 9.3 51 534-584 39-98 (204)
452 PF08225 Antimicrobial19: Pseu 30.7 22 0.00047 19.4 0.4 12 822-833 10-21 (23)
453 PF15015 NYD-SP12_N: Spermatog 30.5 1.1E+02 0.0023 32.6 5.6 48 666-713 236-283 (569)
454 PF12862 Apc5: Anaphase-promot 29.8 3.1E+02 0.0066 22.4 7.4 20 598-617 49-68 (94)
455 PF11838 ERAP1_C: ERAP1-like C 29.6 6.6E+02 0.014 26.1 17.2 86 505-590 146-237 (324)
456 PF04123 DUF373: Domain of unk 28.8 3.8E+02 0.0083 28.3 9.4 83 675-785 28-112 (344)
457 PF09986 DUF2225: Uncharacteri 28.3 5E+02 0.011 25.3 9.7 15 637-651 176-190 (214)
458 PF13934 ELYS: Nuclear pore co 28.0 5.9E+02 0.013 25.0 12.7 112 536-657 90-203 (226)
459 PRK11619 lytic murein transgly 27.9 1E+03 0.022 27.8 40.0 238 468-724 255-508 (644)
460 PF02847 MA3: MA3 domain; Int 27.6 2.1E+02 0.0046 24.2 6.5 21 460-480 8-28 (113)
461 PF04034 DUF367: Domain of unk 27.4 3.8E+02 0.0083 23.4 7.5 50 631-680 71-121 (127)
462 PF12926 MOZART2: Mitotic-spin 27.3 3.3E+02 0.0072 21.9 7.7 42 510-551 29-70 (88)
463 PF04090 RNA_pol_I_TF: RNA pol 27.2 3.2E+02 0.007 26.2 7.8 92 659-750 42-134 (199)
464 COG4976 Predicted methyltransf 26.6 1.2E+02 0.0027 29.4 4.9 55 669-723 6-60 (287)
465 KOG0686 COP9 signalosome, subu 26.2 8.5E+02 0.018 26.2 11.5 131 557-690 152-307 (466)
466 cd08326 CARD_CASP9 Caspase act 26.1 2.9E+02 0.0064 22.1 6.3 61 510-574 20-80 (84)
467 KOG3507 DNA-directed RNA polym 26.1 25 0.00054 25.3 0.2 13 817-829 19-31 (62)
468 PF08311 Mad3_BUB1_I: Mad3/BUB 25.2 4.6E+02 0.01 22.9 9.3 43 573-615 81-124 (126)
469 cd08326 CARD_CASP9 Caspase act 25.2 2.7E+02 0.0059 22.3 6.0 40 434-473 41-80 (84)
470 KOG4507 Uncharacterized conser 25.2 6E+02 0.013 28.7 10.1 126 440-566 590-721 (886)
471 KOG1464 COP9 signalosome, subu 25.1 7.1E+02 0.015 25.0 17.3 186 467-652 40-258 (440)
472 PRK13800 putative oxidoreducta 25.1 1.4E+03 0.029 28.2 25.9 253 342-617 625-879 (897)
473 PHA02537 M terminase endonucle 25.0 2.9E+02 0.0062 27.2 7.3 106 565-690 93-210 (230)
474 PF05119 Terminase_4: Phage te 24.9 1.7E+02 0.0037 24.1 5.2 36 745-780 57-92 (100)
475 PRK11639 zinc uptake transcrip 24.9 2.3E+02 0.005 26.3 6.5 37 606-643 41-77 (169)
476 COG0735 Fur Fe2+/Zn2+ uptake r 24.8 2.8E+02 0.0061 25.0 6.8 45 560-604 25-69 (145)
477 PRK11639 zinc uptake transcrip 24.8 2.8E+02 0.006 25.8 7.0 63 237-299 14-76 (169)
478 smart00777 Mad3_BUB1_I Mad3/BU 24.3 4.5E+02 0.0096 23.1 7.6 40 677-716 82-123 (125)
479 PF11768 DUF3312: Protein of u 24.0 3.3E+02 0.0071 30.5 8.2 55 428-482 413-472 (545)
480 KOG2422 Uncharacterized conser 23.9 1.1E+03 0.024 26.7 13.3 148 285-464 286-460 (665)
481 COG5108 RPO41 Mitochondrial DN 23.9 2.7E+02 0.0059 31.6 7.4 35 501-535 549-583 (1117)
482 COG0790 FOG: TPR repeat, SEL1 23.6 7.9E+02 0.017 25.0 19.7 83 501-586 53-144 (292)
483 PF12968 DUF3856: Domain of Un 23.0 5E+02 0.011 22.5 8.6 29 658-686 96-128 (144)
484 COG5159 RPN6 26S proteasome re 22.9 8.1E+02 0.018 24.9 15.4 134 460-593 9-167 (421)
485 PRK13341 recombination factor 22.6 1.3E+03 0.029 27.4 15.6 108 484-605 192-308 (725)
486 COG5108 RPO41 Mitochondrial DN 22.5 4.4E+02 0.0096 30.1 8.7 47 393-439 33-81 (1117)
487 PF10516 SHNi-TPR: SHNi-TPR; 22.3 1.9E+02 0.0042 19.1 3.8 27 693-719 2-28 (38)
488 PRK09169 hypothetical protein; 21.8 2.1E+03 0.046 29.4 56.1 158 487-644 496-684 (2316)
489 COG0735 Fur Fe2+/Zn2+ uptake r 21.4 3.6E+02 0.0078 24.3 6.8 49 249-297 21-69 (145)
490 PF08424 NRDE-2: NRDE-2, neces 21.4 9.5E+02 0.021 25.1 14.1 32 593-625 157-189 (321)
491 PF11817 Foie-gras_1: Foie gra 21.3 3E+02 0.0064 27.5 7.0 19 563-581 186-204 (247)
492 KOG2758 Translation initiation 21.3 9.3E+02 0.02 25.0 14.4 159 511-686 22-195 (432)
493 PF10255 Paf67: RNA polymerase 21.3 1.8E+02 0.0038 31.4 5.5 109 605-718 74-190 (404)
494 PF14376 Haem_bd: Haem-binding 21.1 34 0.00075 30.5 0.2 6 821-826 44-49 (137)
495 PRK11509 hydrogenase-1 operon 21.0 1.2E+02 0.0027 26.7 3.6 70 731-817 30-100 (132)
496 TIGR01503 MthylAspMut_E methyl 20.8 6.8E+02 0.015 27.5 9.5 202 128-438 29-241 (480)
497 KOG0991 Replication factor C, 20.7 8.2E+02 0.018 24.1 13.7 141 461-612 137-293 (333)
498 COG4890 Predicted outer membra 20.7 53 0.0012 20.6 0.9 9 797-805 12-20 (37)
499 PF12069 DUF3549: Protein of u 20.3 1E+03 0.022 25.1 10.6 137 119-259 172-309 (340)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.7e-154 Score=1376.92 Aligned_cols=802 Identities=35% Similarity=0.627 Sum_probs=790.8
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCcchhHHHHHHHHHcCCCCCcchHHHHHHHHhcCC
Q 002975 48 NRLIYHLNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCG 127 (861)
Q Consensus 48 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 127 (861)
..+..+++.|++++|+.+|+.|.+.|+.|+..+|..++.+|.+.+.++.|.++|..+.+.++.++..++|++|.+|+++|
T Consensus 56 ~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g 135 (857)
T PLN03077 56 SQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFG 135 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCC
Confidence 34449999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhcCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhhhhhhhhhh
Q 002975 128 DLNEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIYGFLL 207 (861)
Q Consensus 128 ~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 207 (861)
+++.|+++|++|+. ||+++||+||.+|++.|++++|+++|++|...|+.||.+||+.+|++|+..+++..+.++|..++
T Consensus 136 ~~~~A~~~f~~m~~-~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~ 214 (857)
T PLN03077 136 ELVHAWYVFGKMPE-RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV 214 (857)
T ss_pred ChHHHHHHHhcCCC-CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHH
Confidence 99999999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHH
Q 002975 208 KCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLS 287 (861)
Q Consensus 208 ~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 287 (861)
+.| +.+|+.++|+|+.+|++ +|++++|.++|++|+++|+++||+||.+|++.|++++|+++|.+|.+.|+.||..||+
T Consensus 215 ~~g-~~~~~~~~n~Li~~y~k-~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~ 292 (857)
T PLN03077 215 RFG-FELDVDVVNALITMYVK-CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292 (857)
T ss_pred HcC-CCcccchHhHHHHHHhc-CCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHH
Confidence 999 99999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCC
Q 002975 288 GVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGG 367 (861)
Q Consensus 288 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 367 (861)
.+|.+|++.|+++.|+++|..+.+.|+.||..++|+|+++|+++|+ +++|.++|++|..+|+++||+||.+|++.|+
T Consensus 293 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~---~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~ 369 (857)
T PLN03077 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS---WGEAEKVFSRMETKDAVSWTAMISGYEKNGL 369 (857)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCC---HHHHHHHHhhCCCCCeeeHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHH
Q 002975 368 RDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFE 447 (861)
Q Consensus 368 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 447 (861)
+++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++..++|+|+++|+++|++++|.++|+
T Consensus 370 -~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~ 448 (857)
T PLN03077 370 -PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFH 448 (857)
T ss_pred -HHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHH
Q 002975 448 SLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIY 527 (861)
Q Consensus 448 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 527 (861)
+|.++|+++||+||.+|+++|+.++|+++|++|.. +++||..||++++.+|++.|+++.+.++|..+.+.|+.+|..++
T Consensus 449 ~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~ 527 (857)
T PLN03077 449 NIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP 527 (857)
T ss_pred hCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceec
Confidence 99999999999999999999999999999999985 69999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHH
Q 002975 528 NALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLIS 607 (861)
Q Consensus 528 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 607 (861)
|+|+++|+|+|++++|.++|+.+ .+|.++||+||.+|+++|+.++|+++|++|.+.|+.||.+||++++.+|++.|+++
T Consensus 528 naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ 606 (857)
T PLN03077 528 NALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVT 606 (857)
T ss_pred hHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Q 002975 608 EGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQ 687 (861)
Q Consensus 608 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 687 (861)
+|.++|+.|.+++|+.|+..||++|+++|+|+|+++||.+++++|+.+||..+|++|+++|+.||+.+.|+.++++++++
T Consensus 607 ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l 686 (857)
T PLN03077 607 QGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFEL 686 (857)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 002975 688 DPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSWIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKE 767 (861)
Q Consensus 688 ~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~ 767 (861)
+|++++.|+.|+|+|+..|+|++|.++++.|+++|++|+|||||||++|++|.|++||++||+.++||.+|++|..+|++
T Consensus 687 ~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 766 (857)
T PLN03077 687 DPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKA 766 (857)
T ss_pred CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCccccccchhhhhhhhhhhhHHHHHHHHhhcCCCCCcEEEEccccccCCcchhhhhhhhhhCceEEeecCCcc
Q 002975 768 FGYLPDTNFVLHELEEEQKVQYLFQHSEKIAVAFGLISTSKSKPIRVFKNLRVCGDCHTAIKYISMVTGREIVLRDSNRF 847 (861)
Q Consensus 768 ~g~~~~~~~~~~~~~~~~~~~~~~~h~e~la~~~~~~~~~~~~~~~~~~nl~~c~~~h~~~~~~s~~~~~~~~~~~~~~~ 847 (861)
.||+||+..++ ++++++|+..+++||||||+|||||+||+|+||||+||||||+|||+++||||++++|||||||.+||
T Consensus 767 ~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rf 845 (857)
T PLN03077 767 SGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQF 845 (857)
T ss_pred CCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcc
Confidence 99999999988 55888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccCCCC
Q 002975 848 HHIKDGKCSCND 859 (861)
Q Consensus 848 h~~~~g~~~c~~ 859 (861)
|||+||+|||||
T Consensus 846 h~f~~g~csc~d 857 (857)
T PLN03077 846 HHFKDGECSCGD 857 (857)
T ss_pred eeCCCCcccCCC
Confidence 999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.9e-125 Score=1100.32 Aligned_cols=612 Identities=37% Similarity=0.659 Sum_probs=605.4
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCC-CCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHH
Q 002975 246 KNTVGWTLMITRCTQLGCPRDAIRLFLDMILSG-FLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSL 324 (861)
Q Consensus 246 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l 324 (861)
++.++|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.++|..+.+.|+.||..++|.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 467899999999999999999999999999765 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCCh
Q 002975 325 VDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDS 404 (861)
Q Consensus 325 i~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 404 (861)
+++|+++|+ +++|.++|++|+++|+++||++|.+|++.|+ +++|+++|++|.+.|+.||..||+.++.+|+..|+.
T Consensus 165 i~~y~k~g~---~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~-~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGM---LIDARRLFDEMPERNLASWGTIIGGLVDAGN-YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCC---HHHHHHHHhcCCCCCeeeHHHHHHHHHHCcC-HHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 999999998 9999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcC
Q 002975 405 NVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTG 484 (861)
Q Consensus 405 ~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 484 (861)
+.+.++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHH
Q 002975 485 VGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITG 564 (861)
Q Consensus 485 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 564 (861)
+.||..||++++.+|++.|++++|.++|..+.+.|+.+|..+|++|+++|+++|++++|.++|++|.++|+++||+||.+
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~ 400 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAG 400 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHH
Q 002975 565 FAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTE 644 (861)
Q Consensus 565 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~e 644 (861)
|+++|+.++|+++|++|.+.|+.||.+||++++.+|++.|.+++|.++|+.|.+++|+.|+..||++|+++|+++|++++
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 002975 645 ALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLI 724 (861)
Q Consensus 645 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~ 724 (861)
|.++|++|+..|+..+|++|+.+|+.+|+.+.|+.+++++++++|++...|+.|+++|++.|+|++|.++++.|+++|++
T Consensus 481 A~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 481 AYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCcccCCCccccccchhhhhhhhhhhhHHHHHHHHhh
Q 002975 725 KEAGCSWIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKEFGYLPDTNFVLHELEEEQKVQYLFQHSEKIAVAFGLI 804 (861)
Q Consensus 725 ~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~h~e~la~~~~~~ 804 (861)
|.|||||||+++++|.|++||.+||+..+||.+++++..+|++.||+||+.++++++++++|+..+++||||||+|||||
T Consensus 561 k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~ 640 (697)
T PLN03081 561 MHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLI 640 (697)
T ss_pred cCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEccccccCCcchhhhhhhhhhCceEEeecCCccccccCCccCCCCCC
Q 002975 805 STSKSKPIRVFKNLRVCGDCHTAIKYISMVTGREIVLRDSNRFHHIKDGKCSCNDYW 861 (861)
Q Consensus 805 ~~~~~~~~~~~~nl~~c~~~h~~~~~~s~~~~~~~~~~~~~~~h~~~~g~~~c~~~~ 861 (861)
+||+|+||||+||||||+|||+|+||||++++|||||||.+|||||+||+|||||||
T Consensus 641 ~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 641 NTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred cCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.2e-81 Score=747.00 Aligned_cols=687 Identities=27% Similarity=0.403 Sum_probs=605.0
Q ss_pred CCceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhhhhhhhhhhhccCCCCchhHHHHH
Q 002975 143 RDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCAL 222 (861)
Q Consensus 143 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~l 222 (861)
++..++|.+|.+|++.|++++|+.+|++|.+.|+.|+..+|..++++|...+.++.|.++|..+.+.+ ..++..++|+|
T Consensus 49 ~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~n~l 127 (857)
T PLN03077 49 SSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSH-PSLGVRLGNAM 127 (857)
T ss_pred cchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcC-CCCCchHHHHH
Confidence 67777999999999999999999999999999999999999999999999999999999999999999 78999999999
Q ss_pred HHHhhhCCCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHH
Q 002975 223 IDMFVKGSVDLESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSG 302 (861)
Q Consensus 223 ~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 302 (861)
+.+|++ +|+++.|.++|++|++||+++||+||++|++.|++++|+++|++|...|+.||.+||+.+|++|+..+++..+
T Consensus 128 i~~~~~-~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 128 LSMFVR-FGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred HHHHHh-CCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhC
Q 002975 303 KQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQG 382 (861)
Q Consensus 303 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~ 382 (861)
+++|..+++.|+.+|..++|+||++|+++|+ +++|.++|++|+.+|+++||+||.+|++.|+ .++|+++|.+|...
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~---~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~-~~eAl~lf~~M~~~ 282 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGD---VVSARLVFDRMPRRDCISWNAMISGYFENGE-CLEGLELFFTMREL 282 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCC---HHHHHHHHhcCCCCCcchhHHHHHHHHhCCC-HHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999 9999999999999999999999999999999 99999999999999
Q ss_pred CCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHH
Q 002975 383 QVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVD 462 (861)
Q Consensus 383 g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 462 (861)
|+.||..||++++.+|++.|+++.|.++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|..+|+++||+||.
T Consensus 283 g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~ 362 (857)
T PLN03077 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMIS 362 (857)
T ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHH
Q 002975 463 AYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEA 542 (861)
Q Consensus 463 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 542 (861)
+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++..++|+|+++|+++|++++
T Consensus 363 ~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~ 442 (857)
T PLN03077 363 GYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDK 442 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 002975 543 AFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGI 622 (861)
Q Consensus 543 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 622 (861)
|.++|++|.++|+++||+||.+|++.|+.++|+.+|++|.+ +++||..||.+++.+|++.|.+++|.+++..|. +.|+
T Consensus 443 A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~-~~g~ 520 (857)
T PLN03077 443 ALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL-RTGI 520 (857)
T ss_pred HHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH-HhCC
Confidence 99999999999999999999999999999999999999986 599999999999999999999999999999998 7799
Q ss_pred CCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCchHHHHHH
Q 002975 623 VQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQ--DPQDPAAHILLSN 700 (861)
Q Consensus 623 ~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~L~~ 700 (861)
.++..++++|+++|+++|++++|.++|+++ +||..+|++++.+|.++|+.++|..+++++.+. .| |..+|..+..
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~ 597 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLC 597 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHH
Confidence 999999999999999999999999999998 899999999999999999999999999999874 45 6778888889
Q ss_pred HHHHcCChhHHHHHHHHHH-hCCCccCCceeEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCcccCCCcccc
Q 002975 701 LYASAGHWEYVANIRKRMK-ERNLIKEAGCSWIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKEFGYLPDTNFVLH 779 (861)
Q Consensus 701 ~y~~~g~~~~a~~~~~~m~-~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~ 779 (861)
.|.+.|++++|.++++.|+ +.|+.+....- .-.+..| ... ..+++..+.+++.+..|+....-.
T Consensus 598 a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y----~~lv~~l----~r~-------G~~~eA~~~~~~m~~~pd~~~~~a 662 (857)
T PLN03077 598 ACSRSGMVTQGLEYFHSMEEKYSITPNLKHY----ACVVDLL----GRA-------GKLTEAYNFINKMPITPDPAVWGA 662 (857)
T ss_pred HHhhcChHHHHHHHHHHHHHHhCCCCchHHH----HHHHHHH----HhC-------CCHHHHHHHHHHCCCCCCHHHHHH
Confidence 9999999999999999998 57776542100 0000000 000 012334444455567777543211
Q ss_pred ccchhhhhhhhhhhhHHHH-HHHHhhcCCCCCcEEEEccccccCCcchhhhhhhhhhCceEEe-------ecCCcccccc
Q 002975 780 ELEEEQKVQYLFQHSEKIA-VAFGLISTSKSKPIRVFKNLRVCGDCHTAIKYISMVTGREIVL-------RDSNRFHHIK 851 (861)
Q Consensus 780 ~~~~~~~~~~~~~h~e~la-~~~~~~~~~~~~~~~~~~nl~~c~~~h~~~~~~s~~~~~~~~~-------~~~~~~h~~~ 851 (861)
-+..+.....+ .--|+.| ..+.+.+...+.-+-+..-....|+-.++.+.-..+..+.+-. --.+..|-|.
T Consensus 663 Ll~ac~~~~~~-e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~ 741 (857)
T PLN03077 663 LLNACRIHRHV-ELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFL 741 (857)
T ss_pred HHHHHHHcCCh-HHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEe
Confidence 12222110000 0012222 2344545444544433333456788888888888877763321 1135678887
Q ss_pred CCccC
Q 002975 852 DGKCS 856 (861)
Q Consensus 852 ~g~~~ 856 (861)
.|--|
T Consensus 742 ~~d~~ 746 (857)
T PLN03077 742 TDDES 746 (857)
T ss_pred cCCCC
Confidence 66544
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-68 Score=624.00 Aligned_cols=479 Identities=25% Similarity=0.423 Sum_probs=461.6
Q ss_pred HhcCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCcccHHHHHHHhcCCcchhhhhhhhhhhhhccCCCCc
Q 002975 137 KSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELG-FCPNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSD 215 (861)
Q Consensus 137 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 215 (861)
+..+..++.++|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.++|..+.+.| +.+|
T Consensus 79 ~~~~~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~ 157 (697)
T PLN03081 79 DDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPD 157 (697)
T ss_pred ccccCCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcc
Confidence 334444678899999999999999999999999999764 78999999999999999999999999999999999 8999
Q ss_pred hhHHHHHHHHhhhCCCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhc
Q 002975 216 VCVGCALIDMFVKGSVDLESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSE 295 (861)
Q Consensus 216 ~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 295 (861)
..++|.|+.+|++ +|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++
T Consensus 158 ~~~~n~Li~~y~k-~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 236 (697)
T PLN03081 158 QYMMNRVLLMHVK-CGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236 (697)
T ss_pred hHHHHHHHHHHhc-CCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCChHHHHHH
Q 002975 296 LELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKL 375 (861)
Q Consensus 296 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l 375 (861)
.|..+.++++|..+.+.|+.+|..++|+|+++|+++|+ +++|.++|++|.++|+++||+||.+|++.|+ .++|+++
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~---~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~-~~eA~~l 312 (697)
T PLN03081 237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD---IEDARCVFDGMPEKTTVAWNSMLAGYALHGY-SEEALCL 312 (697)
T ss_pred CCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCC---HHHHHHHHHhCCCCChhHHHHHHHHHHhCCC-HHHHHHH
Confidence 99999999999999999999999999999999999998 9999999999999999999999999999999 9999999
Q ss_pred HHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCee
Q 002975 376 FSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLV 455 (861)
Q Consensus 376 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 455 (861)
|++|.+.|+.||..||++++.+|++.|+++.|+++|..|.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|++
T Consensus 313 f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~ 392 (697)
T PLN03081 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI 392 (697)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHH-hCCCCchhHHHHHHHHH
Q 002975 456 SYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIK-SGFESNHCIYNALISMY 534 (861)
Q Consensus 456 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~y 534 (861)
+||+||.+|++.|+.++|+++|++|.+.|+.||..||++++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986 69999999999999999
Q ss_pred HccCCHHHHHHHHHhcc-CCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHH
Q 002975 535 SRCANVEAAFQVFKEME-DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKH 612 (861)
Q Consensus 535 ~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 612 (861)
++.|++++|.++|++|. .||..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|..++..|++.|++++|.++
T Consensus 473 ~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v 550 (697)
T PLN03081 473 GREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKV 550 (697)
T ss_pred HhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999997 68999999999999999999999999999976 6675 56999999999999999999999
Q ss_pred HHHHHhhcCCCC
Q 002975 613 FRSMYDEHGIVQ 624 (861)
Q Consensus 613 ~~~m~~~~~~~p 624 (861)
++.|. +.|+..
T Consensus 551 ~~~m~-~~g~~k 561 (697)
T PLN03081 551 VETLK-RKGLSM 561 (697)
T ss_pred HHHHH-HcCCcc
Confidence 99998 557653
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.9e-67 Score=613.22 Aligned_cols=529 Identities=16% Similarity=0.239 Sum_probs=430.0
Q ss_pred CCChhhHHHHHHHHHhcCCcchhHHHHHHHHHcCC-CCCcchHHHHHHHHhcCCChHHHHHHHHhcCCCCCceeHHHHHH
Q 002975 75 HPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKL-EPNSVILNSLISLYSKCGDLNEANKIFKSMGNKRDIVSWSSMIS 153 (861)
Q Consensus 75 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~ 153 (861)
.++...|..++..|++.|+++.|.++++.|.+.|+ .++..+++.++..|++.|.+++|.++|+.|+. ||..+||.||.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-pd~~Tyn~LL~ 445 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-PTLSTFNMLMS 445 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 44556677777777777777777777777777764 35566666777777777777777777777776 77777777777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhhhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCH
Q 002975 154 SYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDL 233 (861)
Q Consensus 154 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~ 233 (861)
+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++++.|.+.| +
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-v--------------------- 503 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-V--------------------- 503 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-C---------------------
Confidence 777777777777777777777766666666666666665555555555555554444 2
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHH--
Q 002975 234 ESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIR-- 311 (861)
Q Consensus 234 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-- 311 (861)
.||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.+++..|.+
T Consensus 504 -----------~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~ 572 (1060)
T PLN03218 504 -----------EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET 572 (1060)
T ss_pred -----------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc
Confidence 3667777777777777788888888888888888888888888888888888888888888888876
Q ss_pred hCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCC----CCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCC
Q 002975 312 TGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLD----HNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPN 387 (861)
Q Consensus 312 ~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~ 387 (861)
.|+.||..+|++||.+|+++|+ +++|.++|+.|.+ ++..+||++|.+|++.|+ +++|+++|++|.+.|+.||
T Consensus 573 ~gi~PD~vTynaLI~ay~k~G~---ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~-~deAl~lf~eM~~~Gv~PD 648 (1060)
T PLN03218 573 HPIDPDHITVGALMKACANAGQ---VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD-WDFALSIYDDMKKKGVKPD 648 (1060)
T ss_pred CCCCCcHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCC
Confidence 5677888888888888888777 8888888888854 355788888888888888 9999999999999999999
Q ss_pred hhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhc----CCCCeehHHHHHHH
Q 002975 388 HFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESL----FEKNLVSYNTMVDA 463 (861)
Q Consensus 388 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~ 463 (861)
..||+.++.+|++.|++++|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++| ..||.++||+||.+
T Consensus 649 ~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~g 728 (1060)
T PLN03218 649 EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 46899999999999
Q ss_pred HHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHH
Q 002975 464 YAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAA 543 (861)
Q Consensus 464 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 543 (861)
|++.|++++|+++|++|...|+.||..||++++.+|++.|++++|.++|..|.+.|+.||..+|++|+.+|.+ ++++|
T Consensus 729 y~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka 806 (1060)
T PLN03218 729 LCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKA 806 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987542 34444
Q ss_pred HHH------HHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002975 544 FQV------FKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMY 617 (861)
Q Consensus 544 ~~~------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 617 (861)
.++ |+.+...+...| .++|+.+|++|++.|+.||..||..++.+++..+..+.+..+++.|.
T Consensus 807 ~~l~~~v~~f~~g~~~~~n~w------------~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~ 874 (1060)
T PLN03218 807 CALGEPVVSFDSGRPQIENKW------------TSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG 874 (1060)
T ss_pred hhhhhhhhhhhccccccccch------------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc
Confidence 444 333222333334 45699999999999999999999999987778888888888887776
Q ss_pred hhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC---CCCCH
Q 002975 618 DEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP---LSADV 658 (861)
Q Consensus 618 ~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~---~~p~~ 658 (861)
..+..|+..+|+++++.+++. .++|..++++|. ..|+.
T Consensus 875 -~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 875 -ISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred -cCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCc
Confidence 557778889999999988532 478999999983 55553
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4e-64 Score=585.43 Aligned_cols=549 Identities=18% Similarity=0.268 Sum_probs=446.2
Q ss_pred CCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCCCCcch-----HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHH
Q 002975 213 DSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEKNTVG-----WTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLS 287 (861)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 287 (861)
.++...+..++..+++ .|++++|.++|++|+.++... ++.++.+|.+.|..++|+++|+.|.. ||..||+
T Consensus 367 ~~~~~~~~~~y~~l~r-~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLR-DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCchHHHHHHHHHHH-CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 4455666666666777 777777777777777655443 34455567777777777777777753 7777777
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccC----CCCcccHHHHHHHHH
Q 002975 288 GVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRML----DHNVMSWTAIITGYV 363 (861)
Q Consensus 288 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~ 363 (861)
.+|.+|++.|+++.|.++|..|.+.|+.||..+|++||.+|+++|+ +++|.++|++|. .||..+||+||.+|+
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~---vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK---VDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777776 777777777775 467778888888888
Q ss_pred hcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHH--cCCCCCcchhhHHHHHHHHcCCHHH
Q 002975 364 QSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVK--RGRALDDCVGNSLISMYARSGRMED 441 (861)
Q Consensus 364 ~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~ 441 (861)
+.|+ +++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|.+ .|+.||..+|++|+.+|+++|++++
T Consensus 519 k~G~-~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~lde 597 (1060)
T PLN03218 519 RAGQ-VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR 597 (1060)
T ss_pred HCcC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHH
Confidence 8887 999999999999999999999999999999999999999999999976 6789999999999999999999999
Q ss_pred HHHHHHhcCC----CCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 002975 442 ARKAFESLFE----KNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIK 517 (861)
Q Consensus 442 A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 517 (861)
|.++|+.|.+ ++..+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|++++|.++++.|.+
T Consensus 598 A~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9999999954 466899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCchhHHHHHHHHHHccCCHHHHHHHHHhcc----CCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHH
Q 002975 518 SGFESNHCIYNALISMYSRCANVEAAFQVFKEME----DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITY 593 (861)
Q Consensus 518 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 593 (861)
.|+.|+..+|++||++|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 678 ~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9999999999999999999999999999999995 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhh----hcC-------------------CHHHHHHHHH
Q 002975 594 IAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLG----RSG-------------------SLTEALEFIR 650 (861)
Q Consensus 594 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~----r~g-------------------~~~eA~~~~~ 650 (861)
++++.+|++.|++++|.++|+.|. +.|+.|+..+|+++++++. +++ ..++|..+|+
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~-k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~ 836 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAK-EDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYR 836 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHH
Confidence 999999999999999999999998 7799999999999998643 222 3468999999
Q ss_pred hCC---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHh-ccCCCCCchHHHHHHHHHHcCCh-hHHHHHHHHHHhCCCcc
Q 002975 651 SMP---LSADVLVWRTFLGACRVHGDTELGKHAAEMIL-EQDPQDPAAHILLSNLYASAGHW-EYVANIRKRMKERNLIK 725 (861)
Q Consensus 651 ~~~---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~L~~~y~~~g~~-~~a~~~~~~m~~~~~~~ 725 (861)
+|. ..||..+|+.++..+...++.+.+..+++.+. +-.+.+..+|..|.+.+ |++ ++|..+++.|.+.|+.+
T Consensus 837 eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p 913 (1060)
T PLN03218 837 ETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVP 913 (1060)
T ss_pred HHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCC
Confidence 984 88999999999977777788888888877543 34556778888888876 444 58999999999999987
Q ss_pred CCce-eEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcC-cccCCCccccc
Q 002975 726 EAGC-SWIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKEFG-YLPDTNFVLHE 780 (861)
Q Consensus 726 ~~~~-s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g-~~~~~~~~~~~ 780 (861)
.... .| ..--.++.|-.|- .--.+...|..+...+. .| ..|.....++.
T Consensus 914 ~~~~~~~-~~~~d~~~~~~~a----a~~~l~~wl~~~~~~~~-~g~~lp~~~~~~~~ 964 (1060)
T PLN03218 914 SVSFKKS-PIVIDAEELPVFA----AEVYLLTILKGLKHRLA-AGAKLPNVTILLPT 964 (1060)
T ss_pred CcccccC-ceEEEcccCcchh----HHHHHHHHHHHHHHHHh-ccCcCCcceeeecc
Confidence 7542 11 1122233332221 11223445556655543 45 56665444544
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.3e-34 Score=354.92 Aligned_cols=651 Identities=13% Similarity=0.051 Sum_probs=319.7
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCcchhHHHHHHHHHcCCCCCcchHHHHHHHHhcCCC
Q 002975 49 RLIYHLNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGD 128 (861)
Q Consensus 49 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 128 (861)
....+...|++++|...|+...... +.+..++..+...+...|+++.|...+..+.+..+. +...+......+...|+
T Consensus 199 ~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 276 (899)
T TIGR02917 199 KGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKN 276 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcC
Confidence 3336677888888888888887654 345566777777777778888888887777766543 22222223333445666
Q ss_pred hHHHHHHHHhcC-CCCC-ceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhhhhhhhhh
Q 002975 129 LNEANKIFKSMG-NKRD-IVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIYGFL 206 (861)
Q Consensus 129 ~~~A~~~~~~~~-~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 206 (861)
+++|...|+.+- ..|+ ...+..+...+...|++++|...|....+.. +.+...+..+...+...|+++.|.+.+..+
T Consensus 277 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 355 (899)
T TIGR02917 277 YEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPA 355 (899)
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 666666666551 1122 2223333444555566666666666555432 112333444445555555555555555555
Q ss_pred hhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCC-----
Q 002975 207 LKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTE---KNTVGWTLMITRCTQLGCPRDAIRLFLDMILSG----- 278 (861)
Q Consensus 207 ~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----- 278 (861)
.+.. +.+...++.+...|.+ .|++++|.+.|+++.+ .+...|..+...+...|++++|++.|+.+.+..
T Consensus 356 ~~~~--~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 432 (899)
T TIGR02917 356 LGLD--PDDPAALSLLGEAYLA-LGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGR 432 (899)
T ss_pred HhcC--CCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchh
Confidence 5443 3445555555555555 5555555555555433 233344445555555555555555555554432
Q ss_pred ----------------------------CCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHh
Q 002975 279 ----------------------------FLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAK 330 (861)
Q Consensus 279 ----------------------------~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~ 330 (861)
.+++..++..+...+...|+.++|.+.+..+++.. +.+...+..+...+..
T Consensus 433 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 511 (899)
T TIGR02917 433 ADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQ 511 (899)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHH
Confidence 12233344444444444444444444444444322 1122233334444444
Q ss_pred CCCCCCHHHHHHHHhccCC---CCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHH
Q 002975 331 CTVDGSVDDSRKVFDRMLD---HNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVA 407 (861)
Q Consensus 331 ~g~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 407 (861)
.|+ +++|.+.|+++.. .+..++..+...+.+.|+ .++|..+|.++...+ +.+...+..+...+...|+++.|
T Consensus 512 ~g~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 586 (899)
T TIGR02917 512 EGN---PDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGN-EEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKA 586 (899)
T ss_pred CCC---HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHH
Confidence 433 4444444444422 123344444444444444 444554444443321 12233334444444445555555
Q ss_pred HHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHHhhcC
Q 002975 408 EQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFE---KNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTG 484 (861)
Q Consensus 408 ~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 484 (861)
.++++.+.+.. +.+...+..+...|.+.|++++|...|+.+.+ .+...|..+...|.+.|++++|...|+++....
T Consensus 587 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 587 LAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK 665 (899)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 55554444332 33334444455555555555555555544421 123344444445555555555555555544321
Q ss_pred CCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhcc--CCCchHHHHHH
Q 002975 485 VGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEME--DRNVISWTSMI 562 (861)
Q Consensus 485 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li 562 (861)
+.+..++..+...+...|++++|.++++.+.+.+ +.+...+..+...|.+.|++++|.+.|+.+. .|+..++..++
T Consensus 666 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 743 (899)
T TIGR02917 666 -PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLH 743 (899)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHH
Confidence 2233444444445555555555555555544443 3344444445555555555555555555443 23334444445
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCH
Q 002975 563 TGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSL 642 (861)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~ 642 (861)
..+.+.|++++|.+.++++.+.. +.+...+..+...|...|+.++|.++|+.+.+.. +++...+..+..++...|+
T Consensus 744 ~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~- 819 (899)
T TIGR02917 744 RALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA--PDNAVVLNNLAWLYLELKD- 819 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCc-
Confidence 55555555555555555554421 2223344444455555555555555555554221 2234444555555555555
Q ss_pred HHHHHHHHhCC-CC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 643 TEALEFIRSMP-LS-ADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 643 ~eA~~~~~~~~-~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
++|++.++++. .. .++.+|..+..++...|+.++|...++++++.+|.++.++..++.+|.+.|++++|.++++.|
T Consensus 820 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 820 PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44555554431 11 233444455555555555555555555555555555555555555555555555555555544
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.5e-34 Score=352.40 Aligned_cols=652 Identities=12% Similarity=0.037 Sum_probs=406.4
Q ss_pred HHhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCcchhHHHHHHHHHcCCCCCcchHHHHHHHHhcCCChHH
Q 002975 52 YHLNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGDLNE 131 (861)
Q Consensus 52 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 131 (861)
.+...|++++|...|+++.+... .+...+..+...+...|+++.|..++..+.+..+ .+...+..+...+...|++++
T Consensus 134 ~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~ 211 (899)
T TIGR02917 134 AYLGLGQLELAQKSYEQALAIDP-RSLYAKLGLAQLALAENRFDEARALIDEVLTADP-GNVDALLLKGDLLLSLGNIEL 211 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHhcCCHHH
Confidence 55566666666666666655432 2334455555555566666666666666555432 244455555555555666666
Q ss_pred HHHHHHhc--CCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHcCC--------------------------------C
Q 002975 132 ANKIFKSM--GNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGF--------------------------------C 177 (861)
Q Consensus 132 A~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--------------------------------~ 177 (861)
|...|+.. ..+.+..+|..++..+...|++++|...++.+.+... .
T Consensus 212 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 291 (899)
T TIGR02917 212 ALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA 291 (899)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 66666554 1112344455555555555555555555555443211 1
Q ss_pred CCc-ccHHHHHHHhcCCcchhhhhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCC---CCcchHHH
Q 002975 178 PNE-YCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTE---KNTVGWTL 253 (861)
Q Consensus 178 p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~ 253 (861)
|+. ..+..+...+...|+++.|...+..+++.. +.+...+..+...+.+ .|++++|...++.+.. .+...|+.
T Consensus 292 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~ 368 (899)
T TIGR02917 292 PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA--PNSHQARRLLASIQLR-LGRVDEAIATLSPALGLDPDDPAALSL 368 (899)
T ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 221 112222334556677777777777777754 5566777788888888 8999999999887764 35667888
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCC
Q 002975 254 MITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTV 333 (861)
Q Consensus 254 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 333 (861)
+...+.+.|++++|.++|+++.+... .+...+..+...+...|+.+.|...+..+.+.... .......++..|.+.|+
T Consensus 369 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~ 446 (899)
T TIGR02917 369 LGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQ 446 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCC
Confidence 99999999999999999999876532 23344555556666777777777777776655422 12233334445555444
Q ss_pred CCCHHHHHHHHhccCC---CCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCC---------------------------
Q 002975 334 DGSVDDSRKVFDRMLD---HNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQ--------------------------- 383 (861)
Q Consensus 334 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g--------------------------- 383 (861)
.++|..+++.+.. .+...|+.+...|...|+ +++|.+.|+++.+..
T Consensus 447 ---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 522 (899)
T TIGR02917 447 ---FDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGD-LAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRF 522 (899)
T ss_pred ---HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5555555555432 133445555555555554 555555555544321
Q ss_pred ------CCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC---CCe
Q 002975 384 ------VAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFE---KNL 454 (861)
Q Consensus 384 ------~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~ 454 (861)
.+.+..++..+...+.+.|+.++|...+..+.+.+ +.+...+..++..|.+.|++++|..+++.+.. .+.
T Consensus 523 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 601 (899)
T TIGR02917 523 EKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSP 601 (899)
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence 11233344444444444455555555555444432 23334444555555555555555555555532 233
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 002975 455 VSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMY 534 (861)
Q Consensus 455 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 534 (861)
..|..+...|.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|..++..+.+.. +.+...+..++..+
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 679 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLL 679 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 456666666666666666666666665432 2344455556666666666666666666665543 34455666666666
Q ss_pred HccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 002975 535 SRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWK 611 (861)
Q Consensus 535 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 611 (861)
.+.|++++|.++++.+.+ .+...|..+...+...|++++|+..|+++.+. .|+..++..++.++.+.|++++|.+
T Consensus 680 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 757 (899)
T TIGR02917 680 LAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVK 757 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHH
Confidence 666666666666666653 24456666777777777777777777777773 4555666677777788888888888
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Q 002975 612 HFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDP 689 (861)
Q Consensus 612 ~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 689 (861)
.++.+.+. .+.+...+..+..+|.+.|+.++|.+.|+++. .++++.+++.+...+...|+ ..|+..+++++++.|
T Consensus 758 ~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~ 834 (899)
T TIGR02917 758 TLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP 834 (899)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC
Confidence 88777643 23456777788888888888888888888863 34567788888888888888 779999999999999
Q ss_pred CCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 002975 690 QDPAAHILLSNLYASAGHWEYVANIRKRMKERN 722 (861)
Q Consensus 690 ~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~ 722 (861)
+++..+..++.+|...|++++|.+.++++.+.+
T Consensus 835 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 835 NIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 988888899999999999999999998887644
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=100.00 E-value=8e-36 Score=253.79 Aligned_cols=106 Identities=64% Similarity=1.098 Sum_probs=98.2
Q ss_pred ceeEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCcccCCCccccccchhhh--------hhhhhhhhHHHHH
Q 002975 728 GCSWIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKEFGYLPDTNFVLHELEEEQK--------VQYLFQHSEKIAV 799 (861)
Q Consensus 728 ~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~h~e~la~ 799 (861)
||||+++ |.|++||.+||+. ++..++...||.|++..+.++++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 8999987 9999999999988 455677788999999999998888766 5689999999999
Q ss_pred HHHhhcCCCCCcEEEEccc-cccCCcchhhhhhhhhhCceEEeecCCcccccc
Q 002975 800 AFGLISTSKSKPIRVFKNL-RVCGDCHTAIKYISMVTGREIVLRDSNRFHHIK 851 (861)
Q Consensus 800 ~~~~~~~~~~~~~~~~~nl-~~c~~~h~~~~~~s~~~~~~~~~~~~~~~h~~~ 851 (861)
||||+++ ||+||+ |||+|||+++|+||+++||+|||||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 899999 999999999999999999999999999999997
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=4.9e-24 Score=261.21 Aligned_cols=638 Identities=12% Similarity=0.053 Sum_probs=434.0
Q ss_pred cchHHHHHHHhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCcchhHHHHHHHHHcCCCCCcchH-------
Q 002975 44 EPLSNRLIYHLNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVIL------- 116 (861)
Q Consensus 44 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------- 116 (861)
..+..........++.+.|...+.++.... +-++..+..+...+.+.|+.++|.+.++...+..+. +....
T Consensus 29 ~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~ 106 (1157)
T PRK11447 29 QQLLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTML 106 (1157)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHH
Confidence 345555557778899999999999988764 346777888888889999999999999999887754 22221
Q ss_pred ---------HHHHHHHhcCCChHHHHHHHHhcC-CCCCceeHH--HHHHHHHhcCChhHHHHHHHHHHHcCCCC-CcccH
Q 002975 117 ---------NSLISLYSKCGDLNEANKIFKSMG-NKRDIVSWS--SMISSYVNRGKQVDAIHMFVEMLELGFCP-NEYCF 183 (861)
Q Consensus 117 ---------~~ll~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~ 183 (861)
..+...+.+.|++++|.+.|+.+- ..|+..... .+.......|+.++|++.|+++.+.. | +...+
T Consensus 107 ~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~--P~~~~~~ 184 (1157)
T PRK11447 107 LSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY--PGNTGLR 184 (1157)
T ss_pred hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC--CCCHHHH
Confidence 222335666777777777777652 112221111 11111123466777777777766542 3 23334
Q ss_pred HHHHHHhcCCcchhhhhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcC---C--CCCcchHHHHHHHH
Q 002975 184 SAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKM---T--EKNTVGWTLMITRC 258 (861)
Q Consensus 184 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~---~--~~~~~~~~~li~~~ 258 (861)
..+-..+...|+.++|.+.++++.+.. + +....+...++.+ . ......+...+..+
T Consensus 185 ~~LA~ll~~~g~~~eAl~~l~~~~~~~--~-----------------~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~ 245 (1157)
T PRK11447 185 NTLALLLFSSGRRDEGFAVLEQMAKSP--A-----------------GRDAAAQLWYGQIKDMPVSDASVAALQKYLQVF 245 (1157)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCC--C-----------------chHHHHHHHHHHHhccCCChhhHHHHHHHHHHC
Confidence 445555566666666666666665432 0 0000011111100 0 00111222223223
Q ss_pred HhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHH
Q 002975 259 TQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVD 338 (861)
Q Consensus 259 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~ 338 (861)
-.......|...+.++......|+... ...-.++...|++++|...+..+++... .+...+..|...|.+.|+ .+
T Consensus 246 p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~---~~ 320 (1157)
T PRK11447 246 SDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGD---RA 320 (1157)
T ss_pred CCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC---HH
Confidence 333334455555655544322333221 1223445567888888888888877532 355667777788888777 88
Q ss_pred HHHHHHhccCCC--Cc---ccHHHH------------HHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhccc
Q 002975 339 DSRKVFDRMLDH--NV---MSWTAI------------ITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNL 401 (861)
Q Consensus 339 ~A~~~~~~~~~~--~~---~~~~~l------------i~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 401 (861)
+|+..|++..+. +. ..|..+ ...+.+.|+ +++|...|++..+.. +.+...+..+...+...
T Consensus 321 eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~-~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~ 398 (1157)
T PRK11447 321 RAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANN-LAQAERLYQQARQVD-NTDSYAVLGLGDVAMAR 398 (1157)
T ss_pred HHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 888888877442 21 123222 335667888 999999999998753 23455666777888899
Q ss_pred CChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCC------------eehHHHHHHHHHhcCC
Q 002975 402 LDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKN------------LVSYNTMVDAYAKNLN 469 (861)
Q Consensus 402 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~ 469 (861)
|++++|++.++.+++.. +.+...+..+...|. .++.++|..+++.+.... ...+..+...+...|+
T Consensus 399 g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~ 476 (1157)
T PRK11447 399 KDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGK 476 (1157)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCC
Confidence 99999999999998764 334555666777774 467899999988775321 1235556778889999
Q ss_pred hhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHh
Q 002975 470 SEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKE 549 (861)
Q Consensus 470 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 549 (861)
+++|++.|++..+.. +-+...+..+...+.+.|+.++|...++.+++.. +.+...+..+...+.+.|+.++|...++.
T Consensus 477 ~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~ 554 (1157)
T PRK11447 477 WAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNT 554 (1157)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 999999999998753 2245677788889999999999999999998754 44555666666677889999999999998
Q ss_pred ccCC----Cch---------HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002975 550 MEDR----NVI---------SWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSM 616 (861)
Q Consensus 550 ~~~~----~~~---------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 616 (861)
+... +.. .+..+...+...|+.++|+.+++. .+++...+..+...+...|++++|+..|+..
T Consensus 555 l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~a 629 (1157)
T PRK11447 555 LPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRV 629 (1157)
T ss_pred CCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8632 111 123456678899999999999872 2345567778889999999999999999999
Q ss_pred HhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCc
Q 002975 617 YDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPA 693 (861)
Q Consensus 617 ~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 693 (861)
.+. .| +...+..++.+|...|++++|++.++... ..| +..++..+..++...|+.++|...++++++..|+++.
T Consensus 630 l~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 630 LTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred HHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 843 34 56778889999999999999999999875 344 4667788888899999999999999999998876653
Q ss_pred ------hHHHHHHHHHHcCChhHHHHHHHHHHh-CCC
Q 002975 694 ------AHILLSNLYASAGHWEYVANIRKRMKE-RNL 723 (861)
Q Consensus 694 ------~~~~L~~~y~~~g~~~~a~~~~~~m~~-~~~ 723 (861)
.+..++.+|...|++++|.+.++.... .|+
T Consensus 707 ~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 707 SMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 566789999999999999999886643 344
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=4.7e-23 Score=252.64 Aligned_cols=610 Identities=10% Similarity=0.029 Sum_probs=433.7
Q ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHcCCCCCcchHHHHHHHHhcCCChHHHHHHHHhcC-CCCCcee-H----------
Q 002975 81 YSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGDLNEANKIFKSMG-NKRDIVS-W---------- 148 (861)
Q Consensus 81 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~~~~~~-~---------- 148 (861)
+...++.+...++.+.|.+.+..+....+. ++.++..+...+.+.|+.++|.+.+++.. ..|+... +
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcC
Confidence 455566677788999999999988877654 67788888888999999999999999882 2233222 1
Q ss_pred ------HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcc-cHHHHHHHhcCCcchhhhhhhhhhhhhccCCCCchhHHHH
Q 002975 149 ------SSMISSYVNRGKQVDAIHMFVEMLELGFCPNEY-CFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCA 221 (861)
Q Consensus 149 ------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~ 221 (861)
-.+...+.+.|++++|+..|+.+.+.+ .|+.. ............|+.+.|...++.+++.. |.+...+..
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~--P~~~~~~~~ 186 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY--PGNTGLRNT 186 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 223446778899999999999987643 22221 11111222234578888888888888875 667777888
Q ss_pred HHHHhhhCCCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcc-cHHHHHHHHhccCCch
Q 002975 222 LIDMFVKGSVDLESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRF-TLSGVVSACSELELFT 300 (861)
Q Consensus 222 l~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~ 300 (861)
+...+.. .|+.++|+..|+++...... +...+...++.+...+..|+.. .+...+..+-......
T Consensus 187 LA~ll~~-~g~~~eAl~~l~~~~~~~~~-------------~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~ 252 (1157)
T PRK11447 187 LALLLFS-SGRRDEGFAVLEQMAKSPAG-------------RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVA 252 (1157)
T ss_pred HHHHHHc-cCCHHHHHHHHHHHhhCCCc-------------hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHH
Confidence 8888887 88888888888876542211 0111111122222222222211 1222222222222334
Q ss_pred HHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCC--C-CcccHHHHHHHHHhcCCChHHHHHHHH
Q 002975 301 SGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLD--H-NVMSWTAIITGYVQSGGRDKEAVKLFS 377 (861)
Q Consensus 301 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~~A~~l~~ 377 (861)
.+...+....+....|+.. ...+...+...|+ +++|...|++... | +...+..+...|.+.|+ +++|+..|+
T Consensus 253 ~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~---~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~-~~eA~~~l~ 327 (1157)
T PRK11447 253 AARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQ---GGKAIPELQQAVRANPKDSEALGALGQAYSQQGD-RARAVAQFE 327 (1157)
T ss_pred HHHHHHHHHHHhccCcchH-HHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHH
Confidence 4555555444333233321 1233455666666 9999999998854 3 56788899999999999 999999999
Q ss_pred HHhhCCCCC-ChhhH------------HHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHH
Q 002975 378 DMIQGQVAP-NHFTF------------ASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARK 444 (861)
Q Consensus 378 ~m~~~g~~p-~~~t~------------~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 444 (861)
+..+..... +...+ ......+.+.|++++|...++.+++.. +.+...+..+..+|.+.|++++|++
T Consensus 328 ~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~ 406 (1157)
T PRK11447 328 KALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAER 406 (1157)
T ss_pred HHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 988743221 11111 112345678899999999999999875 4556677789999999999999999
Q ss_pred HHHhcCCC---CeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCC--------CCHHHHHHHHHHhhcccchHHHHHHHH
Q 002975 445 AFESLFEK---NLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVG--------TSAYTFASLLSGASSIGAIGKGEQIHA 513 (861)
Q Consensus 445 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--------p~~~t~~~ll~a~~~~~~~~~a~~~~~ 513 (861)
.|++..+. +...+..+...|. .++.++|+.+++.+...... .....+..+...+...|++++|.+.++
T Consensus 407 ~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~ 485 (1157)
T PRK11447 407 YYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQR 485 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99998543 3446666777764 46789999998876433111 011234456677888999999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--C-CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 002975 514 RIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED--R-NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNG 590 (861)
Q Consensus 514 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 590 (861)
.+++.. +.+..++..+...|.+.|++++|...|+++.+ | +...+..+...+...|+.++|+..++++......++.
T Consensus 486 ~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~ 564 (1157)
T PRK11447 486 QRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNI 564 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhH
Confidence 999875 45677888999999999999999999998763 3 4455656666677899999999999887543222221
Q ss_pred H---------HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHH
Q 002975 591 I---------TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVL 659 (861)
Q Consensus 591 ~---------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~ 659 (861)
. .+..+...+...|+.++|..+++. .+.+...+..+.+.+.+.|++++|++.+++.. ..| +..
T Consensus 565 ~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~ 638 (1157)
T PRK11447 565 QELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNAD 638 (1157)
T ss_pred HHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 1 233456778899999999998862 23455667789999999999999999999874 344 577
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 002975 660 VWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERN 722 (861)
Q Consensus 660 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~ 722 (861)
.+..++..+...|+.++|+..++++++..|+++..+..++.+|...|++++|.++++.+....
T Consensus 639 a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 639 ARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 999999999999999999999999999999999999999999999999999999999887643
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=1.8e-22 Score=235.35 Aligned_cols=639 Identities=11% Similarity=0.027 Sum_probs=450.3
Q ss_pred hHHHHHHHhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCcchhHHHHHHHHHcCCCCCcchHHHHHHHHhc
Q 002975 46 LSNRLIYHLNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSK 125 (861)
Q Consensus 46 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 125 (861)
++.....+...|++++|+..|+...+..+. +..++..+.+.+...|+.++|+...+..++..+ -|...+..+ ..+
T Consensus 47 ~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~L-a~i-- 121 (987)
T PRK09782 47 RLDKALKAQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSL-AAI-- 121 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHH-HHh--
Confidence 334444556679999999999999987633 477889999999999999999999999988764 244444443 333
Q ss_pred CCChHHHHHHHHhc--CCCCCceeHHHHHHH--------HHhcCChhHHHHHHHHHHHcCCCCCcccHHHH-HHHhcCCc
Q 002975 126 CGDLNEANKIFKSM--GNKRDIVSWSSMISS--------YVNRGKQVDAIHMFVEMLELGFCPNEYCFSAV-IRACSNTE 194 (861)
Q Consensus 126 ~g~~~~A~~~~~~~--~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~ 194 (861)
+++++|..+++++ ..+.+...+..+... |.+. ++|.+.++ .......|+..+.... .+.+...+
T Consensus 122 -~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~ 196 (987)
T PRK09782 122 -PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLK 196 (987)
T ss_pred -ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHh
Confidence 8999999999998 221233344444443 6666 44555444 4433445555555555 88999999
Q ss_pred chhhhhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 002975 195 NVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDM 274 (861)
Q Consensus 195 ~~~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 274 (861)
+++.+..++..+.+.+ +.+......|...|....++ +.|..+++...+.+...+..+...|.+.|+.++|.++++++
T Consensus 197 dw~~Ai~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~ 273 (987)
T PRK09782 197 QWSQADTLYNEARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIEN 273 (987)
T ss_pred CHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 9999999999999987 55666677777788772255 88888887655578889999999999999999999999998
Q ss_pred HHCCCC-CCcccHHHHHHHHhccCCchH-HHHHHHHHHHhCCCCc-cchHHHHHHHHHhCCCCCCHHHHHHHHhccCCCC
Q 002975 275 ILSGFL-PDRFTLSGVVSACSELELFTS-GKQLHSWAIRTGLALD-VCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHN 351 (861)
Q Consensus 275 ~~~g~~-pd~~t~~~ll~a~~~~~~~~~-a~~i~~~~~~~g~~~~-~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~~ 351 (861)
...-.. |+..++.-++ .+.+.... +..-+.. .+.++ ....-.++..+.+.+. ++.+.++.+ ....+
T Consensus 274 ~~~~~~~~~~~~~~~~l---~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~ 342 (987)
T PRK09782 274 KPLFTTDAQEKSWLYLL---SKYSANPVQALANYTV----QFADNRQYVVGATLPVLLKEGQ---YDAAQKLLA-TLPAN 342 (987)
T ss_pred cccccCCCccHHHHHHH---HhccCchhhhccchhh----hhHHHHHHHHHHHHHHHHhccH---HHHHHHHhc-CCCcc
Confidence 765333 5555554443 33333321 1100000 01111 1122344778888777 887777744 22222
Q ss_pred cccHHHHHHHHH--hcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHc-C-CCCCcchhh
Q 002975 352 VMSWTAIITGYV--QSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKR-G-RALDDCVGN 427 (861)
Q Consensus 352 ~~~~~~li~~~~--~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g-~~~~~~~~~ 427 (861)
.. ..+.... ..+. ..++.+.+..|.+.. +-+....-.+--...+.|+.++|.+++...... + -..+....+
T Consensus 343 ~~---~~~r~~~~~~~~~-~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 417 (987)
T PRK09782 343 EM---LEERYAVSVATRN-KAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMA 417 (987)
T ss_pred hH---HHHHHhhccccCc-hhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHH
Confidence 22 2222222 2244 667777777776541 113333333333445778899999999888662 1 122444556
Q ss_pred HHHHHHHHcCC---HHHHHHH-------------------------HHhcCC---C--CeehHHHHHHHHHhcCChhHHH
Q 002975 428 SLISMYARSGR---MEDARKA-------------------------FESLFE---K--NLVSYNTMVDAYAKNLNSEKAF 474 (861)
Q Consensus 428 ~li~~~~~~g~---~~~A~~~-------------------------~~~~~~---~--~~~~~~~li~~~~~~g~~~~A~ 474 (861)
-|+..|.+.+. ..++..+ +..... . +...|..+..++.. ++.++|+
T Consensus 418 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi 496 (987)
T PRK09782 418 RLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVAL 496 (987)
T ss_pred HHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHH
Confidence 77888887766 3333332 112211 1 44567777777776 8899999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCC
Q 002975 475 ELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRN 554 (861)
Q Consensus 475 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 554 (861)
..+.+.... .|+......+..++...|++++|...+..+... +|+...+..+...+.+.|+.++|...|+...+.+
T Consensus 497 ~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~ 572 (987)
T PRK09782 497 YAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG 572 (987)
T ss_pred HHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 988887754 467665555555667899999999999987654 3444556677888999999999999999887644
Q ss_pred chHHHHHH---HHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHH
Q 002975 555 VISWTSMI---TGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYA 630 (861)
Q Consensus 555 ~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~ 630 (861)
+..++... ......|++++|+..|++.++ ..|+...+..+..++.+.|++++|...|+... .+.| +...+.
T Consensus 573 P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL---~l~Pd~~~a~~ 647 (987)
T PRK09782 573 LGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAAL---ELEPNNSNYQA 647 (987)
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHH
Confidence 43333333 333345999999999999998 67888889999999999999999999999988 4455 456777
Q ss_pred HHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCh
Q 002975 631 CMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHW 708 (861)
Q Consensus 631 ~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~ 708 (861)
.+...+...|++++|++.+++.. ..| ++..|..+..++...|+.+.|+..++++++++|+++.+....+++.....++
T Consensus 648 nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~ 727 (987)
T PRK09782 648 ALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNF 727 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHH
Confidence 88889999999999999999873 444 5779999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCC
Q 002975 709 EYVANIRKRMKERNL 723 (861)
Q Consensus 709 ~~a~~~~~~m~~~~~ 723 (861)
+.|.+.++..-..++
T Consensus 728 ~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 728 RRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHhhcCc
Confidence 999887775544333
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=1.1e-19 Score=212.28 Aligned_cols=557 Identities=11% Similarity=0.016 Sum_probs=350.8
Q ss_pred CChHHHHHHHHhc--CCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhhhhhhh
Q 002975 127 GDLNEANKIFKSM--GNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIYG 204 (861)
Q Consensus 127 g~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 204 (861)
|++++|...|+.. ..+.+..++..|...|.+.|+.++|+..+++..+. .|+...|..++..+ ++..++..+++
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ye 132 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTVE 132 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHHH
Confidence 4444444444443 11112333444444445555555555554444432 23333333322111 44444445555
Q ss_pred hhhhccCCCCchhHHHHHHHH--------hhhCCCCHHHHHHHHhcCCCCC--cch-HHHHHHHHHhcCCchHHHHHHHH
Q 002975 205 FLLKCGYFDSDVCVGCALIDM--------FVKGSVDLESAYKVFDKMTEKN--TVG-WTLMITRCTQLGCPRDAIRLFLD 273 (861)
Q Consensus 205 ~~~~~g~~~~~~~~~~~l~~~--------~~~~~g~~~~A~~~f~~~~~~~--~~~-~~~li~~~~~~g~~~~A~~l~~~ 273 (861)
++++.. |.+..++..+... |.+ .+....+++ .+...++ ... .-.+...|.+.|++++|++++.+
T Consensus 133 ~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q-~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 133 ELLAQQ--KACDAVPTLRCRSEVGQNALRLAQ-LPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHhC--CCChhHHHHHHHHhhccchhhhhh-HHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 554443 4444444444443 555 444444444 2222222 222 33336777778888888888888
Q ss_pred HHHCCCCCCcccHHHHHHHHhc-cCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCC---
Q 002975 274 MILSGFLPDRFTLSGVVSACSE-LELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLD--- 349 (861)
Q Consensus 274 m~~~g~~pd~~t~~~ll~a~~~-~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~--- 349 (861)
+.+.+... ..-...+-.++.. .++ +.+..++.. .+..++.+...+.+.|.+.|+ .++|.+++.++..
T Consensus 208 L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~---~~~A~~~L~~~~~~~~ 278 (987)
T PRK09782 208 ARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGE---KARLQHYLIENKPLFT 278 (987)
T ss_pred HHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCC---HHHHHHHHHhCccccc
Confidence 87765332 2223333345554 344 555555331 333566777788888888777 8888887777642
Q ss_pred --CCcccHH------------------------------HHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 002975 350 --HNVMSWT------------------------------AIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKA 397 (861)
Q Consensus 350 --~~~~~~~------------------------------~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 397 (861)
+...+|- .++..+.+++. ++-+.++. .+.|..... .+..
T Consensus 279 ~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~--~~r~ 349 (987)
T PRK09782 279 TDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQ-YDAAQKLL------ATLPANEML--EERY 349 (987)
T ss_pred CCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccH-HHHHHHHh------cCCCcchHH--HHHH
Confidence 1112221 22444455554 55333331 234433322 3332
Q ss_pred h--cccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC--CCe----ehHHHHHHHHHhcCC
Q 002975 398 C--GNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFE--KNL----VSYNTMVDAYAKNLN 469 (861)
Q Consensus 398 ~--~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~ 469 (861)
. ...+...++.+.+..+.+.. +-+.....-+.....+.|+.++|.++|+.... ++. ..-+-++..|...+.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 428 (987)
T PRK09782 350 AVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPY 428 (987)
T ss_pred hhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCc
Confidence 2 23356666777777766652 33444445555567789999999999998854 222 234466777777765
Q ss_pred ---hhHHHHH------------HHH----------Hhh-cCC-CC--CHHHHHHHHHHhhcccchHHHHHHHHHHHHhCC
Q 002975 470 ---SEKAFEL------------LHE----------IED-TGV-GT--SAYTFASLLSGASSIGAIGKGEQIHARIIKSGF 520 (861)
Q Consensus 470 ---~~~A~~l------------~~~----------m~~-~g~-~p--~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 520 (861)
..+++.+ ..+ ... .+. ++ +...+..+..++.. ++.++|...+.......
T Consensus 429 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~- 506 (987)
T PRK09782 429 LATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ- 506 (987)
T ss_pred ccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC-
Confidence 4444433 111 111 112 23 45566666666655 78888999888777654
Q ss_pred CCchhHHHHHHHHHHccCCHHHHHHHHHhccC--CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-HHHHHHH
Q 002975 521 ESNHCIYNALISMYSRCANVEAAFQVFKEMED--RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNG-ITYIAVL 597 (861)
Q Consensus 521 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll 597 (861)
|+......+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|..+|++.++. .|+. ..+..+.
T Consensus 507 -Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La 583 (987)
T PRK09782 507 -PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLH 583 (987)
T ss_pred -CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHH
Confidence 4544444455556789999999999998763 45566778888899999999999999999985 4553 3444445
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHH
Q 002975 598 SACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTE 675 (861)
Q Consensus 598 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~ 675 (861)
..+...|++++|...+++.. .+.|+...|..+..++.+.|+.++|++.+++.. ..| +...+..+..++...|+.+
T Consensus 584 ~~l~~~Gr~~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 584 AQRYIPGQPELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIA 660 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 55667799999999999988 456778889999999999999999999999874 455 5678888889999999999
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 676 LGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 676 ~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+|+..++++++++|+++.++..++.+|...|++++|...+++..+
T Consensus 661 eAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 661 QSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998865
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=8.1e-20 Score=187.88 Aligned_cols=444 Identities=13% Similarity=0.111 Sum_probs=352.0
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhC
Q 002975 252 TLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKC 331 (861)
Q Consensus 252 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 331 (861)
..|..-..+.|++++|.+.-...-++. ..+..+...+-..+.+..+++...+--...++.. .--..+|+.+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 345555667888888887665443322 1112222222223344444444333222222221 12235677788888887
Q ss_pred CCCCCHHHHHHHHhccCCC---CcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHH-HhcccCChHHH
Q 002975 332 TVDGSVDDSRKVFDRMLDH---NVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLK-ACGNLLDSNVA 407 (861)
Q Consensus 332 g~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~~~~~~~~a 407 (861)
|+ +++|+..++.+.+. .+..|-.+..++...|+ .+.|.+.|.+..+ +.|+.....+-+. .....|++++|
T Consensus 130 g~---~~~al~~y~~aiel~p~fida~inla~al~~~~~-~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea 203 (966)
T KOG4626|consen 130 GQ---LQDALALYRAAIELKPKFIDAYINLAAALVTQGD-LELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEA 203 (966)
T ss_pred ch---HHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCC-CcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchh
Confidence 77 99999999998653 46789999999999999 9999999999877 5677666554443 33457889999
Q ss_pred HHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCe---ehHHHHHHHHHhcCChhHHHHHHHHHhhcC
Q 002975 408 EQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNL---VSYNTMVDAYAKNLNSEKAFELLHEIEDTG 484 (861)
Q Consensus 408 ~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 484 (861)
..-+.+.+... +--..+|+.|...+-..|++..|+..|++...-|+ ..|-.|...|...+.+++|+..+.+....
T Consensus 204 ~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l- 281 (966)
T KOG4626|consen 204 KACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL- 281 (966)
T ss_pred HHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-
Confidence 99998887764 33456788899999999999999999999976554 47888999999999999999999888753
Q ss_pred CCCC-HHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--C-CchHHHH
Q 002975 485 VGTS-AYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED--R-NVISWTS 560 (861)
Q Consensus 485 ~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~ 560 (861)
.|+ ...+..+...|...|.++.|...+++.+... +.-+..|+.|..++-..|++.+|...|.+... | -..+.+.
T Consensus 282 -rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~N 359 (966)
T KOG4626|consen 282 -RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNN 359 (966)
T ss_pred -CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHH
Confidence 555 5677778888899999999999999998864 33467899999999999999999999998873 3 3568899
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCh-hHHHHHHHHhhh
Q 002975 561 MITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRM-EHYACMVDLLGR 638 (861)
Q Consensus 561 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~r 638 (861)
|...|...|.+++|..+|....+ +.|. ...++.|...|-+.|++++|+..|++.. .+.|+. ..|+.|...|-.
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHH
Confidence 99999999999999999999999 7888 5689999999999999999999999887 788975 689999999999
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHH
Q 002975 639 SGSLTEALEFIRSM-PLSAD-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVA 712 (861)
Q Consensus 639 ~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~ 712 (861)
.|+.++|.+.+.++ ...|. +...+.|...++..|+..+|+..++.+++++||.+.+|..|.-...--..|.+-.
T Consensus 435 ~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d 510 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYD 510 (966)
T ss_pred hhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchH
Confidence 99999999999887 35664 5578889999999999999999999999999999999999988888888887743
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=6.8e-19 Score=181.18 Aligned_cols=413 Identities=12% Similarity=0.149 Sum_probs=328.4
Q ss_pred HHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCC---CcccHHHHHHHHHhcCC
Q 002975 291 SACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDH---NVMSWTAIITGYVQSGG 367 (861)
Q Consensus 291 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~ 367 (861)
.-.-+.|++.+|++--..+-.... .+....-.+-..|..+.+ .+....--...... -..+|..+...+-..|+
T Consensus 56 h~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r---~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 56 HRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSR---LDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccc---hhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 334456777777765544433221 111111112233444333 44433322222222 24578889999999999
Q ss_pred ChHHHHHHHHHHhhCCCCC-ChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCC-cchhhHHHHHHHHcCCHHHHHHH
Q 002975 368 RDKEAVKLFSDMIQGQVAP-NHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALD-DCVGNSLISMYARSGRMEDARKA 445 (861)
Q Consensus 368 ~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~ 445 (861)
.++|+.+++.|.+. +| ....|..+..++...|+.+.|.+.+.+.++.+ |+ ..+.+-+.......|++++|...
T Consensus 132 -~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 132 -LQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred -HHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHH
Confidence 99999999999884 55 56788899999999999999999999988764 33 33344456666778999999999
Q ss_pred HHhcCCCC---eehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCC-HHHHHHHHHHhhcccchHHHHHHHHHHHHhCCC
Q 002975 446 FESLFEKN---LVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTS-AYTFASLLSGASSIGAIGKGEQIHARIIKSGFE 521 (861)
Q Consensus 446 ~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 521 (861)
+.+..+.+ .+.|+.|...+-.+|+..+|++.|++..+ +.|+ ...|..|...|...+.++.|...+.++.... +
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-p 283 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-P 283 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-C
Confidence 98875543 36899999999999999999999999885 3555 3578888888888889999988888877653 4
Q ss_pred CchhHHHHHHHHHHccCCHHHHHHHHHhccC--CC-chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-HHHHHHH
Q 002975 522 SNHCIYNALISMYSRCANVEAAFQVFKEMED--RN-VISWTSMITGFAKHGFAARALEIFYKMLADGIKPNG-ITYIAVL 597 (861)
Q Consensus 522 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll 597 (861)
....++..|.-.|-..|.+|-|+..|++..+ |+ ...||.|..++-..|+..+|...|++.+. +.|+. ...+.|.
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLg 361 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLG 361 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHH
Confidence 4567788888899999999999999999874 44 57999999999999999999999999999 77874 5888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCCh-hHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCCH
Q 002975 598 SACSHAGLISEGWKHFRSMYDEHGIVQRM-EHYACMVDLLGRSGSLTEALEFIRSM-PLSAD-VLVWRTFLGACRVHGDT 674 (861)
Q Consensus 598 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~r~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~ 674 (861)
..+...|.+++|..+|.... .+.|.. ...+.|...|-.+|++++|+..+++. .++|. +..++.+.+.|...|+.
T Consensus 362 ni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhH
Confidence 99999999999999999877 556654 56788999999999999999999987 47786 45899999999999999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 675 ELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 675 ~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+.|.+.+.+++..+|.-+.++..|+.+|-..|+..+|..-++....
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999998886644
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=6.6e-17 Score=186.41 Aligned_cols=388 Identities=15% Similarity=0.072 Sum_probs=288.6
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHhccCC--CCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCC-ChhhHHHHHH
Q 002975 320 VGCSLVDMYAKCTVDGSVDDSRKVFDRMLD--HNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAP-NHFTFASVLK 396 (861)
Q Consensus 320 ~~~~li~~y~~~g~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~ 396 (861)
.+......|.+.|+ ++.|...|++... |+...|..+..+|.+.|+ +++|++.+.+..+. .| +...+..+..
T Consensus 129 ~~k~~G~~~~~~~~---~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~-~~~Ai~~~~~al~l--~p~~~~a~~~~a~ 202 (615)
T TIGR00990 129 KLKEKGNKAYRNKD---FNKAIKLYSKAIECKPDPVYYSNRAACHNALGD-WEKVVEDTTAALEL--DPDYSKALNRRAN 202 (615)
T ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCC-HHHHHHHHHHHHHc--CCCCHHHHHHHHH
Confidence 45566677888777 9999999998743 567788889999999999 99999999998874 45 4567777888
Q ss_pred HhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHH----------------
Q 002975 397 ACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTM---------------- 460 (861)
Q Consensus 397 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---------------- 460 (861)
++...|++++|..-+..+...+-..+... ..++.-+.+......+...++.-+. +..++..+
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKPE-NLPSVTFVGNYLQSFRPKPRPAGL 280 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHHccCCcchhhh
Confidence 99999999999988876655432222111 1122211111112223333222111 11111111
Q ss_pred --------------HH---HH---HhcCChhHHHHHHHHHhhcC-CCC-CHHHHHHHHHHhhcccchHHHHHHHHHHHHh
Q 002975 461 --------------VD---AY---AKNLNSEKAFELLHEIEDTG-VGT-SAYTFASLLSGASSIGAIGKGEQIHARIIKS 518 (861)
Q Consensus 461 --------------i~---~~---~~~g~~~~A~~l~~~m~~~g-~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 518 (861)
+. .+ ...+++++|++.|++....+ ..| +...+..+...+...|++++|...++.+++.
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 10 00 12367899999999998765 234 3456777778888999999999999999886
Q ss_pred CCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHH
Q 002975 519 GFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYI 594 (861)
Q Consensus 519 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~ 594 (861)
. +.....|..+...|...|++++|...|+...+ .+...|..+...|...|++++|+..|++.++ ..|+ ...+.
T Consensus 361 ~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~ 437 (615)
T TIGR00990 361 D-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHI 437 (615)
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHH
Confidence 4 34566888899999999999999999998763 3567899999999999999999999999998 5665 55777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCCC-------HH-HHHHHH
Q 002975 595 AVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSAD-------VL-VWRTFL 665 (861)
Q Consensus 595 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~-------~~-~~~~ll 665 (861)
.+..++...|++++|...|+...+.. +.+...|..+..++...|++++|++.|++.. ..|+ .. .++..+
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence 88889999999999999999988432 2346788889999999999999999999853 3332 11 122222
Q ss_pred HHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 666 GACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 666 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
..+...|++++|+..++++++++|++..++..|+.+|...|++++|.+.++...+
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2344469999999999999999999999999999999999999999999987765
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=6.6e-18 Score=184.91 Aligned_cols=290 Identities=12% Similarity=0.133 Sum_probs=199.5
Q ss_pred HHHcCCHHHHHHHHHhcCCC---CeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCC---HHHHHHHHHHhhcccchH
Q 002975 433 YARSGRMEDARKAFESLFEK---NLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTS---AYTFASLLSGASSIGAIG 506 (861)
Q Consensus 433 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~~ 506 (861)
+...|++++|...|+++.+. +..+|..+...|...|++++|..+++.+...+..++ ..++..+...+...|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34455556666666555332 223455566666666666666666666655432221 134555566666666666
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCC--------chHHHHHHHHHHhcCChHHHHHHH
Q 002975 507 KGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRN--------VISWTSMITGFAKHGFAARALEIF 578 (861)
Q Consensus 507 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~ 578 (861)
+|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+.+ ...|..+...+.+.|++++|+..|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6666666666542 3455667777777777777777777777765321 113455666777888888888888
Q ss_pred HHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC--hhHHHHHHHHhhhcCCHHHHHHHHHhCC-C
Q 002975 579 YKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR--MEHYACMVDLLGRSGSLTEALEFIRSMP-L 654 (861)
Q Consensus 579 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~ 654 (861)
+++.+. .|+ ...+..+...+.+.|++++|.++|+++.+. .|+ ...+..++.+|.+.|++++|.+.++++. .
T Consensus 204 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 204 KKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888773 454 446677778888888888888888888732 233 3556778888888888888888888763 4
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH---cCChhHHHHHHHHHHhCCCccCCce
Q 002975 655 SADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS---AGHWEYVANIRKRMKERNLIKEAGC 729 (861)
Q Consensus 655 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~---~g~~~~a~~~~~~m~~~~~~~~~~~ 729 (861)
.|+...+..++..+...|+.+.|...++++++..|++.... .+...+.. .|+.+++..+++.|.+++++++|.+
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~-~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH-RLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHH-HHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 66766677888889999999999999999999999876444 44444443 5699999999999999999999873
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.82 E-value=1.1e-14 Score=158.86 Aligned_cols=578 Identities=13% Similarity=0.097 Sum_probs=400.5
Q ss_pred hHHHHHHHHhcC--CCCCceeHHHHHHHH--HhcCChhHHHHHHHHHHHc--CCCCCcccHHHHHHHhcCCcchhhhhhh
Q 002975 129 LNEANKIFKSMG--NKRDIVSWSSMISSY--VNRGKQVDAIHMFVEMLEL--GFCPNEYCFSAVIRACSNTENVAIGHII 202 (861)
Q Consensus 129 ~~~A~~~~~~~~--~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 202 (861)
++.|...|..+. .++|+.. .|..++ ...|++..|+.+|...... ...||+.. .+-..+.+.++.+.|...
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~--LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILA--LLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHH--HHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHH
Confidence 689999998873 2233333 233333 4567999999999997643 34455432 222445688899999999
Q ss_pred hhhhhhccCCCCchhHHHHHHHHhhh--CCCCHHHHHHHHhcCC---CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 002975 203 YGFLLKCGYFDSDVCVGCALIDMFVK--GSVDLESAYKVFDKMT---EKNTVGWTLMITRCTQLGCPRDAIRLFLDMILS 277 (861)
Q Consensus 203 ~~~~~~~g~~~~~~~~~~~l~~~~~~--~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 277 (861)
+..+.+.. |.++...-.|.-+-.. ....+..+..++...- ..|.+..|.|.+.|.-.|++..++.+...+...
T Consensus 222 ~~ralqLd--p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 222 FERALQLD--PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHhcC--hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 99998865 3333333333222222 1223444555544332 257889999999999999999999999988765
Q ss_pred CCC--CCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCC---Cc
Q 002975 278 GFL--PDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDH---NV 352 (861)
Q Consensus 278 g~~--pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~---~~ 352 (861)
... .-...|-.+-+++-..|+++.|.+.+-...+..-..-+.-+-.|..+|.+.|+ ++.+...|+.+... +.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~d---le~s~~~fEkv~k~~p~~~ 376 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGD---LEESKFCFEKVLKQLPNNY 376 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhch---HHHHHHHHHHHHHhCcchH
Confidence 311 11235778888999999999999998877765433323345578899999888 99999999998553 33
Q ss_pred ccHHHHHHHHHhcCC---ChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHH----HHcCCCCCcch
Q 002975 353 MSWTAIITGYVQSGG---RDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHA----VKRGRALDDCV 425 (861)
Q Consensus 353 ~~~~~li~~~~~~g~---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~----~~~g~~~~~~~ 425 (861)
.+.-.+...|+..+. ..+.|..++.+....- +.|...|..+...+-...- ......+..+ ...+-.+.+.+
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~ 454 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEV 454 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 444555555655531 1466666666665532 3466677666666554433 3335555443 45666788889
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHhcCCC-------Cee------hHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHH-H
Q 002975 426 GNSLISMYARSGRMEDARKAFESLFEK-------NLV------SYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAY-T 491 (861)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t 491 (861)
.|.+...+...|++.+|...|...... |.. +--.+...+-..++++.|.+.|+.+.+. -|.-+ .
T Consensus 455 LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ 532 (1018)
T KOG2002|consen 455 LNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDA 532 (1018)
T ss_pred HHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHH
Confidence 999999999999999999999876322 221 1222445556677899999999999875 34443 3
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC-----CCchHHHHHHHHHH
Q 002975 492 FASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED-----RNVISWTSMITGFA 566 (861)
Q Consensus 492 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~ 566 (861)
|.-++...-..+...+|...+..+.... ..++.+++-+.+.|.+..++..|.+-|..+.+ +|..+.-+|.+.|.
T Consensus 533 ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~ 611 (1018)
T KOG2002|consen 533 YLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYI 611 (1018)
T ss_pred HHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHH
Confidence 3333322334567788888888887754 56777788888899999999989886665542 35555555555444
Q ss_pred h------------cCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHH
Q 002975 567 K------------HGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMV 633 (861)
Q Consensus 567 ~------------~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 633 (861)
+ .+..++|+++|.+.++. .| |...-+.+.-.++..|++.+|..+|.+..+... ....+|-.+.
T Consensus 612 ~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~--~~~dv~lNla 687 (1018)
T KOG2002|consen 612 QALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS--DFEDVWLNLA 687 (1018)
T ss_pred HHhcccccChHHHHHHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh--hCCceeeeHH
Confidence 2 24578899999998884 44 556667777788999999999999999985432 3345677788
Q ss_pred HHhhhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHH--------
Q 002975 634 DLLGRSGSLTEALEFIRSMP----LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNL-------- 701 (861)
Q Consensus 634 ~~~~r~g~~~eA~~~~~~~~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~-------- 701 (861)
..|..+|++-.|+++|+... .+.++.+...|..++...|.+.+|...+..+..+.|.|+.....++-+
T Consensus 688 h~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~ 767 (1018)
T KOG2002|consen 688 HCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESI 767 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHH
Confidence 89999999999999998752 344678888999999999999999999999999999998876665553
Q ss_pred -----------HHHcCChhHHHHHHHHHHhCCCc
Q 002975 702 -----------YASAGHWEYVANIRKRMKERNLI 724 (861)
Q Consensus 702 -----------y~~~g~~~~a~~~~~~m~~~~~~ 724 (861)
....+..++|.+++..|...+-+
T Consensus 768 lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 768 LRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34455677788888888775544
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.79 E-value=1.3e-16 Score=174.60 Aligned_cols=260 Identities=16% Similarity=0.159 Sum_probs=177.4
Q ss_pred hhhHHHHHHHHcCCHHHHHHHHHhcCCCC-------eehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 002975 425 VGNSLISMYARSGRMEDARKAFESLFEKN-------LVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLS 497 (861)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 497 (861)
++..+...|.+.|++++|..+++.+.... ...+..+...|.+.|++++|+.+|+++.+. .+.+..++..+..
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~ 149 (389)
T PRK11788 71 LHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE-GDFAEGALQQLLE 149 (389)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 33444444444455555544444442211 123455556666666666666666666543 1234555666666
Q ss_pred HhhcccchHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHccCCHHHHHHHHHhccC--C-CchHHHHHHHHHHhcCC
Q 002975 498 GASSIGAIGKGEQIHARIIKSGFESN----HCIYNALISMYSRCANVEAAFQVFKEMED--R-NVISWTSMITGFAKHGF 570 (861)
Q Consensus 498 a~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~ 570 (861)
.+...|++++|.+.+..+.+.+..+. ...+..+...|.+.|++++|.+.|+++.+ | +...+..+...|.+.|+
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 229 (389)
T PRK11788 150 IYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGD 229 (389)
T ss_pred HHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCC
Confidence 66666666666666666655432221 12355677788889999999999988763 3 35577788889999999
Q ss_pred hHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHH
Q 002975 571 AARALEIFYKMLADGIKPN--GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEF 648 (861)
Q Consensus 571 ~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~ 648 (861)
+++|+++|+++.+. .|+ ..++..++.++...|++++|...++.+.+ ..|+...+..++.++.+.|++++|.++
T Consensus 230 ~~~A~~~~~~~~~~--~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A~~~ 304 (389)
T PRK11788 230 YAAAIEALERVEEQ--DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAAQAL 304 (389)
T ss_pred HHHHHHHHHHHHHH--ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999884 344 45678888999999999999999999873 356666778888999999999999999
Q ss_pred HHhC-CCCCCHHHHHHHHHHHHH---hCCHHHHHHHHHHHhc----cCCC
Q 002975 649 IRSM-PLSADVLVWRTFLGACRV---HGDTELGKHAAEMILE----QDPQ 690 (861)
Q Consensus 649 ~~~~-~~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~----~~p~ 690 (861)
++++ ...|+...+..++..+.. +|+.+.+...++++++ .+|+
T Consensus 305 l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 305 LREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 9876 467888888888877654 4577777777666654 4555
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.77 E-value=4.6e-15 Score=174.19 Aligned_cols=385 Identities=9% Similarity=0.046 Sum_probs=264.9
Q ss_pred HHHHHHhCCCCCCHHHHHHHHhccCC-C--CcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCC-ChhhHHHHHHHhc
Q 002975 324 LVDMYAKCTVDGSVDDSRKVFDRMLD-H--NVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAP-NHFTFASVLKACG 399 (861)
Q Consensus 324 li~~y~~~g~~g~~~~A~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~ 399 (861)
.+......|+ .++|++++.+... . +...+..+...+...|+ +++|.++|++..+. .| +......+...+.
T Consensus 21 ~~~ia~~~g~---~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~-~~~A~~~~~~al~~--~P~~~~a~~~la~~l~ 94 (765)
T PRK10049 21 WLQIALWAGQ---DAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQ-WQNSLTLWQKALSL--EPQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3444444444 7777777766643 2 22346667777777777 77777777777653 33 3444555566667
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC--C-CeehHHHHHHHHHhcCChhHHHHH
Q 002975 400 NLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFE--K-NLVSYNTMVDAYAKNLNSEKAFEL 476 (861)
Q Consensus 400 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l 476 (861)
..|++++|...++.+++.. +.+.. +..+..++...|+.++|...++++.+ | +...+..+...+...+..++|++.
T Consensus 95 ~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 7778888888777777663 34444 66777777788888888888877743 2 334555667777777888888877
Q ss_pred HHHHhhcCCCCCH------HHHHHHHHHh-----hcccch---HHHHHHHHHHHHh-CCCCchh-H-HHH---HHHHHHc
Q 002975 477 LHEIEDTGVGTSA------YTFASLLSGA-----SSIGAI---GKGEQIHARIIKS-GFESNHC-I-YNA---LISMYSR 536 (861)
Q Consensus 477 ~~~m~~~g~~p~~------~t~~~ll~a~-----~~~~~~---~~a~~~~~~~~~~-~~~~~~~-~-~~~---li~~y~~ 536 (861)
++.... .|+. .....++... ...+++ ++|.+.++.+.+. .-.|+.. . ... .+.++..
T Consensus 173 l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 173 IDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred HHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 776553 2221 0111112211 122233 6677777777754 2223221 1 111 1234456
Q ss_pred cCCHHHHHHHHHhccCCC---ch-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----hHHHHHHHHHHHhcCCHH
Q 002975 537 CANVEAAFQVFKEMEDRN---VI-SWTSMITGFAKHGFAARALEIFYKMLADGIKPN-----GITYIAVLSACSHAGLIS 607 (861)
Q Consensus 537 ~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~ 607 (861)
.|++++|+..|+.+.+.+ +. .-..+...|...|++++|+..|+++.+. .|. ......+..++...|+++
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHH
Confidence 799999999999988532 11 1122567889999999999999998874 332 234566777888999999
Q ss_pred HHHHHHHHHHhhcC----------CCCC---hhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhC
Q 002975 608 EGWKHFRSMYDEHG----------IVQR---MEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHG 672 (861)
Q Consensus 608 ~a~~~~~~m~~~~~----------~~p~---~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g 672 (861)
+|.++++.+.+... -.|+ ...+..+..++...|++++|++.++++. .+.+...|..++..+...|
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 99999998874321 1123 2345567789999999999999999874 3446779999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 673 DTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 673 ~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
+.+.|+..++++++++|++...++.++.++...|+|++|..+.+.+.+.
T Consensus 408 ~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 408 WPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999988763
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.77 E-value=3.5e-15 Score=171.26 Aligned_cols=329 Identities=9% Similarity=-0.013 Sum_probs=262.1
Q ss_pred cHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHH
Q 002975 354 SWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMY 433 (861)
Q Consensus 354 ~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~ 433 (861)
-...++..+.+.|+ .++|+.++.........+ ......++.++...|+++.|.+.++.+.+.. +.+...+..+...+
T Consensus 44 ~~~~~~~~~~~~g~-~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l 120 (656)
T PRK15174 44 NIILFAIACLRKDE-TDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVL 120 (656)
T ss_pred CHHHHHHHHHhcCC-cchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 34556777888898 999999999988764333 3344445566677999999999999998875 55667788889999
Q ss_pred HHcCCHHHHHHHHHhcCC--C-CeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHH
Q 002975 434 ARSGRMEDARKAFESLFE--K-NLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQ 510 (861)
Q Consensus 434 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 510 (861)
.+.|++++|...|++... | +...|..+...+...|++++|...++.+......+ ...+.. +..+...|++++|..
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~-~~~l~~~g~~~eA~~ 198 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIAT-CLSFLNKSRLPEDHD 198 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHH-HHHHHHcCCHHHHHH
Confidence 999999999999998844 3 45678889999999999999999999887654322 223323 344788899999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHH----HHHHHHHHHH
Q 002975 511 IHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAAR----ALEIFYKMLA 583 (861)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~ 583 (861)
.+..+.+....++......+...|.+.|++++|...|+.... .+...+..+...|...|++++ |+..|++..+
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 999987765334455556667889999999999999998874 356788889999999999986 8999999998
Q ss_pred cCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCCCHHH
Q 002975 584 DGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR-MEHYACMVDLLGRSGSLTEALEFIRSMP-LSADVLV 660 (861)
Q Consensus 584 ~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~~~~ 660 (861)
..|+ ...+..+...+...|++++|...++...+ ..|+ ...+..+...|.+.|++++|++.++++. ..|+...
T Consensus 279 --l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~ 353 (656)
T PRK15174 279 --FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSK 353 (656)
T ss_pred --hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH
Confidence 5676 55888899999999999999999999884 3444 4566778899999999999999999874 5666544
Q ss_pred HH-HHHHHHHHhCCHHHHHHHHHHHhccCCCCC
Q 002975 661 WR-TFLGACRVHGDTELGKHAAEMILEQDPQDP 692 (861)
Q Consensus 661 ~~-~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 692 (861)
+. .+..++...|+.+.|+..++++++.+|++.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 43 456678899999999999999999999875
No 22
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.77 E-value=7.1e-14 Score=152.72 Aligned_cols=481 Identities=13% Similarity=0.116 Sum_probs=313.0
Q ss_pred hhhhhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCCCC------cchHHHHHHHHHhcCCchHHHH
Q 002975 196 VAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEKN------TVGWTLMITRCTQLGCPRDAIR 269 (861)
Q Consensus 196 ~~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~ 269 (861)
...|.+.+...-+.. +.++.+.+.|.+.|.- .|++..+..+...+...+ ..+|--+..+|-..|++++|..
T Consensus 252 ~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyf-K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~ 328 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN--NENPVALNHLANHFYF-KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFK 328 (1018)
T ss_pred HHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhh-cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 344445554444443 5666777777777776 777777777766554422 2346667777778888888888
Q ss_pred HHHHHHHCCCCCCccc--HHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCC-CCCCHHHHHHHHhc
Q 002975 270 LFLDMILSGFLPDRFT--LSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCT-VDGSVDDSRKVFDR 346 (861)
Q Consensus 270 l~~~m~~~g~~pd~~t--~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g-~~g~~~~A~~~~~~ 346 (861)
.|.+-.+ ..||.++ +..+...+...|+++.+...|+.+.+.. +.+..+...|-..|...+ .....+.|..++.+
T Consensus 329 yY~~s~k--~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K 405 (1018)
T KOG2002|consen 329 YYMESLK--ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGK 405 (1018)
T ss_pred HHHHHHc--cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence 7766554 3445433 3345566777788888888887777653 223344455555565542 11226777777777
Q ss_pred cCCC---CcccHHHHHHHHHhcCCChHHHHHHHHHHh----hCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHc--
Q 002975 347 MLDH---NVMSWTAIITGYVQSGGRDKEAVKLFSDMI----QGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKR-- 417 (861)
Q Consensus 347 ~~~~---~~~~~~~li~~~~~~g~~~~~A~~l~~~m~----~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-- 417 (861)
...+ |...|-.+...|-+.. ...++..|.... ..+-.+-....|.+.......|+++.|...+......
T Consensus 406 ~~~~~~~d~~a~l~laql~e~~d--~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~ 483 (1018)
T KOG2002|consen 406 VLEQTPVDSEAWLELAQLLEQTD--PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLL 483 (1018)
T ss_pred HHhcccccHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhh
Confidence 6554 4455665555555544 334466665543 3455567777888888888889999999888888665
Q ss_pred -CCCCCcc------hhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHh-------cCChhHHHHHHHHHhhc
Q 002975 418 -GRALDDC------VGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAK-------NLNSEKAFELLHEIEDT 483 (861)
Q Consensus 418 -g~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~~A~~l~~~m~~~ 483 (861)
-..+|.. +--.+...+-..++.+.|.+.|..+....+. .|++|.+ .+...+|...+++....
T Consensus 484 ~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~----YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~ 559 (1018)
T KOG2002|consen 484 EVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG----YIDAYLRLGCMARDKNNLYEASLLLKDALNI 559 (1018)
T ss_pred hhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch----hHHHHHHhhHHHHhccCcHHHHHHHHHHHhc
Confidence 2233332 2223556666677888888988888654332 2333333 35677888888887653
Q ss_pred CCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHc------------cCCHHHHHHHHHhc
Q 002975 484 GVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKS-GFESNHCIYNALISMYSR------------CANVEAAFQVFKEM 550 (861)
Q Consensus 484 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y~~------------~g~~~~A~~~~~~~ 550 (861)
. .-++..++.+...+.....+..|..-+..+.+. ...+|.+..-+|.+.|.. .+..++|+++|.+.
T Consensus 560 d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kv 638 (1018)
T KOG2002|consen 560 D-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKV 638 (1018)
T ss_pred c-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHH
Confidence 2 333334444455666666777777766655443 223677777777776653 24567888888877
Q ss_pred cC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChh
Q 002975 551 ED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRME 627 (861)
Q Consensus 551 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 627 (861)
.+ +|..+-|.+.-.++..|++.+|..+|.+..+... -+..+|.++..+|...|++..|++.|+...+++.-.-+..
T Consensus 639 L~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~ 717 (1018)
T KOG2002|consen 639 LRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSE 717 (1018)
T ss_pred HhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 74 4667778888889999999999999999988653 3445788899999999999999999999888888777888
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CH-HHHHHHHHH------------------HHHhCCHHHHHHHHHHHhc
Q 002975 628 HYACMVDLLGRSGSLTEALEFIRSMP-LSA-DV-LVWRTFLGA------------------CRVHGDTELGKHAAEMILE 686 (861)
Q Consensus 628 ~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~-~~~~~ll~~------------------~~~~g~~~~a~~~~~~~~~ 686 (861)
+..+|..++.++|.+.+|.+...... ..| |+ +.+|..+-. -...+..+.|.+.|..+-+
T Consensus 718 vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~ 797 (1018)
T KOG2002|consen 718 VLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSK 797 (1018)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999988776652 333 22 222322211 1123356677777777776
Q ss_pred cCCC
Q 002975 687 QDPQ 690 (861)
Q Consensus 687 ~~p~ 690 (861)
..+.
T Consensus 798 ~~d~ 801 (1018)
T KOG2002|consen 798 NGDK 801 (1018)
T ss_pred cCCC
Confidence 6554
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.76 E-value=1e-14 Score=168.32 Aligned_cols=269 Identities=13% Similarity=0.084 Sum_probs=209.1
Q ss_pred cCCHHHHHHHHHhcCCC------CeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCC-HHHHHHHHHHhhcccchHHH
Q 002975 436 SGRMEDARKAFESLFEK------NLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTS-AYTFASLLSGASSIGAIGKG 508 (861)
Q Consensus 436 ~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a 508 (861)
.+++++|.+.|+...+. ....|+.+...+...|++++|+..|++.... .|+ ..+|..+...+...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 46788888888877532 2346777888888899999999999998864 444 55777888888899999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--C-CchHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 002975 509 EQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED--R-NVISWTSMITGFAKHGFAARALEIFYKMLADG 585 (861)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 585 (861)
...++.+++.. +.+..++..+...|...|++++|...|++..+ | +...|..+...+.+.|++++|+..|++.++
T Consensus 385 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-- 461 (615)
T TIGR00990 385 EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK-- 461 (615)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 99999988865 55678899999999999999999999998864 3 456788888899999999999999999988
Q ss_pred CCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCh--------hHHHHHHHHhhhcCCHHHHHHHHHhC-CCC
Q 002975 586 IKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRM--------EHYACMVDLLGRSGSLTEALEFIRSM-PLS 655 (861)
Q Consensus 586 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--------~~~~~l~~~~~r~g~~~eA~~~~~~~-~~~ 655 (861)
..|+ ...+..+..++...|++++|+..|+...+ +.|+. ..++.....+...|++++|.+++++. ...
T Consensus 462 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 462 NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID 538 (615)
T ss_pred hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 4565 56888889999999999999999999873 33321 11222223444579999999999985 345
Q ss_pred CC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 656 AD-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 656 p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
|+ ...|..++..+...|++++|+..+++++++.+.....+ ....|.+|.++....++
T Consensus 539 p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~--------~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 539 PECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV--------QAISYAEATRTQIQVQE 596 (615)
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 54 45788899999999999999999999999987644322 22345566666555554
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=2.2e-14 Score=142.11 Aligned_cols=468 Identities=13% Similarity=0.105 Sum_probs=280.6
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC--Ccchh-HHHHHHHHHcCCCCCcchHHHHHHHH
Q 002975 47 SNRLIYHLNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIRSR--NFHLG-KLVHSLLTRSKLEPNSVILNSLISLY 123 (861)
Q Consensus 47 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a-~~~~~~~~~~~~~~~~~~~~~ll~~~ 123 (861)
.+.+.....+|.+.++.-+|+.|.+.|+..+...-..|++.-+..+ ++.-+ ++.|-.|.+.|-. +..+|
T Consensus 119 E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW------- 190 (625)
T KOG4422|consen 119 ENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW------- 190 (625)
T ss_pred hhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc-------
Confidence 3556677789999999999999999998888877666666544433 33323 4555556555533 33343
Q ss_pred hcCCChHHHHHHHHhcCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhhhhhh
Q 002975 124 SKCGDLNEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIY 203 (861)
Q Consensus 124 ~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 203 (861)
+.|++.+ -+|+..| .+..++..||.|+++--..+.|.++|++-.....+.+..+||.+|.+-.- ..++.+.
T Consensus 191 -K~G~vAd--L~~E~~P--KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv 261 (625)
T KOG4422|consen 191 -KSGAVAD--LLFETLP--KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLV 261 (625)
T ss_pred -ccccHHH--HHHhhcC--CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHH
Confidence 4566655 5566655 46678999999999999999999999999988889999999999977543 3347777
Q ss_pred hhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc
Q 002975 204 GFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDR 283 (861)
Q Consensus 204 ~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 283 (861)
.+|+... +.||.+++|+++....+ .|.++.|++. |++++.+|++-|+.|.-
T Consensus 262 ~EMisqk-m~Pnl~TfNalL~c~ak-fg~F~~ar~a---------------------------alqil~EmKeiGVePsL 312 (625)
T KOG4422|consen 262 AEMISQK-MTPNLFTFNALLSCAAK-FGKFEDARKA---------------------------ALQILGEMKEIGVEPSL 312 (625)
T ss_pred HHHHHhh-cCCchHhHHHHHHHHHH-hcchHHHHHH---------------------------HHHHHHHHHHhCCCcch
Confidence 7887777 77777777777777777 7777666544 34455555555555555
Q ss_pred ccHHHHHHHHhccCCchH-HHHHHHHHHHh--C--CCC----ccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCC----
Q 002975 284 FTLSGVVSACSELELFTS-GKQLHSWAIRT--G--LAL----DVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDH---- 350 (861)
Q Consensus 284 ~t~~~ll~a~~~~~~~~~-a~~i~~~~~~~--g--~~~----~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~---- 350 (861)
.+|..+|...++.++... +..+...+... | +.| |...+..-++.+.+..+ .+.|.++-.-+...
T Consensus 313 sSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d---~~LA~~v~~ll~tg~N~~ 389 (625)
T KOG4422|consen 313 SSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRD---LELAYQVHGLLKTGDNWK 389 (625)
T ss_pred hhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhh---HHHHHHHHHHHHcCCchh
Confidence 555555555555544432 22222222221 1 111 22223333444444444 44454444333211
Q ss_pred -------CcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCc
Q 002975 351 -------NVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDD 423 (861)
Q Consensus 351 -------~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~ 423 (861)
...-|..+....++... .+.-+.+|+.|+-+-+-|+..+...++++....+.++...+++..++..|.....
T Consensus 390 ~ig~~~~~~fYyr~~~~licq~es-~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~ 468 (625)
T KOG4422|consen 390 FIGPDQHRNFYYRKFFDLICQMES-IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRS 468 (625)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhH
Confidence 11234456666677666 8888999999988888899999999999999999999999999999887744333
Q ss_pred chhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhc-CChhHHH-HHHHHHhhcCCCCCHHHHHHHHHHhhc
Q 002975 424 CVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKN-LNSEKAF-ELLHEIEDTGVGTSAYTFASLLSGASS 501 (861)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~-~l~~~m~~~g~~p~~~t~~~ll~a~~~ 501 (861)
....-++..+++.. +.|+...-..+-...++. -++.++. .--.+|.+. .......+.++-.+.+
T Consensus 469 ~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R 534 (625)
T KOG4422|consen 469 DLREEILMLLARDK------------LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLR 534 (625)
T ss_pred HHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHH
Confidence 33222222222211 122211111111111110 0111111 112223322 3344455555666677
Q ss_pred ccchHHHHHHHHHHHHhCCC-CchhHHH---HHHHHHHccCCHHHHHHHHHhccCCCchHHH----HHHHHHHhcCChHH
Q 002975 502 IGAIGKGEQIHARIIKSGFE-SNHCIYN---ALISMYSRCANVEAAFQVFKEMEDRNVISWT----SMITGFAKHGFAAR 573 (861)
Q Consensus 502 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~---~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~ 573 (861)
.|..++|.++++.+.+.+-. |-....| -+++.-.+..+...|..+++-|...|..... .+...|.-+....+
T Consensus 535 ~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~ 614 (625)
T KOG4422|consen 535 AGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAINQEQKE 614 (625)
T ss_pred cchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHH
Confidence 77777787777777554322 2233334 4555556667777777777777655444333 33344444433344
Q ss_pred HHHHH
Q 002975 574 ALEIF 578 (861)
Q Consensus 574 A~~~~ 578 (861)
|+.-|
T Consensus 615 ~ls~l 619 (625)
T KOG4422|consen 615 ALSNL 619 (625)
T ss_pred HHhhh
Confidence 44433
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.76 E-value=3.4e-15 Score=171.37 Aligned_cols=327 Identities=10% Similarity=0.011 Sum_probs=265.5
Q ss_pred ChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC--C-CeehHHHHHHH
Q 002975 387 NHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFE--K-NLVSYNTMVDA 463 (861)
Q Consensus 387 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~ 463 (861)
+..-...++..+.+.|+++.|..++...+.....+ ......++......|++++|...|+++.. | +...|..+...
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 33445567778889999999999999998876444 44444555667779999999999999854 3 45678888899
Q ss_pred HHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHH
Q 002975 464 YAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAA 543 (861)
Q Consensus 464 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 543 (861)
+.+.|++++|+..|++..... +.+...+..+...+...|+.++|...+..+..... .+...+..+. .+...|++++|
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~~-~l~~~g~~~eA 196 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATCL-SFLNKSRLPED 196 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHHH-HHHHcCCHHHH
Confidence 999999999999999998652 33456778888899999999999999998877653 3333443343 47889999999
Q ss_pred HHHHHhccCC----CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHH----HHHHHH
Q 002975 544 FQVFKEMEDR----NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISE----GWKHFR 614 (861)
Q Consensus 544 ~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~----a~~~~~ 614 (861)
..+++.+.+. +...+..+...+...|++++|+..|+++.+. .|+ ...+..+..++...|++++ |...|+
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 9999987643 2334455667889999999999999999984 465 5677789999999999986 799999
Q ss_pred HHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Q 002975 615 SMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD 691 (861)
Q Consensus 615 ~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 691 (861)
...+ +.| +...+..+..++.+.|++++|+..+++.. ..| +..++..+..++...|+++.|+..++++++.+|++
T Consensus 275 ~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 275 HALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 8873 445 45678889999999999999999999873 445 46678888999999999999999999999999999
Q ss_pred CchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 002975 692 PAAHILLSNLYASAGHWEYVANIRKRMKERN 722 (861)
Q Consensus 692 ~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~ 722 (861)
+..+..++.+|...|++++|.+.++...+..
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 8878788999999999999999998876543
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.74 E-value=4.8e-14 Score=165.66 Aligned_cols=364 Identities=11% Similarity=0.048 Sum_probs=246.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHhccCC---CCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 002975 321 GCSLVDMYAKCTVDGSVDDSRKVFDRMLD---HNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKA 397 (861)
Q Consensus 321 ~~~li~~y~~~g~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 397 (861)
+..+...+...|+ +++|..+|++... .+...+..+...+...|+ .++|+..+++..+. .|+...+..+..+
T Consensus 52 ~~~lA~~~~~~g~---~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~-~~eA~~~l~~~l~~--~P~~~~~~~la~~ 125 (765)
T PRK10049 52 YAAVAVAYRNLKQ---WQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQ-YDEALVKAKQLVSG--APDKANLLALAYV 125 (765)
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 4444455555444 6666666655422 233445556666666666 77777777777654 3322225556666
Q ss_pred hcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCee--------hHHHHHHHHH----
Q 002975 398 CGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLV--------SYNTMVDAYA---- 465 (861)
Q Consensus 398 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~li~~~~---- 465 (861)
+...|+.+.|...++.+.+.. +.+...+..+..++.+.|..++|.+.++.... ++. ....++....
T Consensus 126 l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~ 203 (765)
T PRK10049 126 YKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTR 203 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhccccc
Confidence 667777777777777777664 33444555567777777888888888877654 211 1111222221
Q ss_pred -hcCCh---hHHHHHHHHHhhc-CCCCCHH-HHH----HHHHHhhcccchHHHHHHHHHHHHhCCC-CchhHHHHHHHHH
Q 002975 466 -KNLNS---EKAFELLHEIEDT-GVGTSAY-TFA----SLLSGASSIGAIGKGEQIHARIIKSGFE-SNHCIYNALISMY 534 (861)
Q Consensus 466 -~~g~~---~~A~~l~~~m~~~-g~~p~~~-t~~----~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~y 534 (861)
..+++ ++|++.++.+... ...|+.. .+. ..+.++...++.++|...++.+.+.+.+ |+ .....+..+|
T Consensus 204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~y 282 (765)
T PRK10049 204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAY 282 (765)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHH
Confidence 22234 7788888888754 2233321 111 1134456778999999999999887632 22 1223357789
Q ss_pred HccCCHHHHHHHHHhccCCC-------chHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----------CCCCh---HHH
Q 002975 535 SRCANVEAAFQVFKEMEDRN-------VISWTSMITGFAKHGFAARALEIFYKMLADG-----------IKPNG---ITY 593 (861)
Q Consensus 535 ~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~---~t~ 593 (861)
...|++++|+..|+++.+.+ ...+..+..++...|++++|+.+++++.+.. -.|+. ..+
T Consensus 283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~ 362 (765)
T PRK10049 283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQ 362 (765)
T ss_pred HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHH
Confidence 99999999999999876422 2345566778899999999999999998742 11232 244
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHh
Q 002975 594 IAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSAD-VLVWRTFLGACRVH 671 (861)
Q Consensus 594 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~-~~~~~~ll~~~~~~ 671 (861)
..+...+...|+.++|+..++++.... +.+...+..+..++...|++++|++.+++.. ..|+ ...+..++..+...
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~~--P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~ 440 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYNA--PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDL 440 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Confidence 567778889999999999999998432 3356778889999999999999999999874 5565 56777788888999
Q ss_pred CCHHHHHHHHHHHhccCCCCCchH
Q 002975 672 GDTELGKHAAEMILEQDPQDPAAH 695 (861)
Q Consensus 672 g~~~~a~~~~~~~~~~~p~~~~~~ 695 (861)
|+++.|+..++++++.+|+++.+.
T Consensus 441 ~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 441 QEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999999997554
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.70 E-value=5.8e-13 Score=153.11 Aligned_cols=188 Identities=6% Similarity=0.047 Sum_probs=99.8
Q ss_pred HHHccCCHHHHHHHHHhccCCC--ch--HHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CC-ChHHHHHHHHHHHhc
Q 002975 533 MYSRCANVEAAFQVFKEMEDRN--VI--SWTSMITGFAKHGFAARALEIFYKMLADGI----KP-NGITYIAVLSACSHA 603 (861)
Q Consensus 533 ~y~~~g~~~~A~~~~~~~~~~~--~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p-~~~t~~~ll~a~~~~ 603 (861)
++.+.|++.++++.|+.+.... +. +-..+..+|...+++++|+.+|+++..... .| +......|.-|+...
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 3344455555555555554211 11 223344555555555555555555544210 11 122234455555555
Q ss_pred CCHHHHHHHHHHHHhhcC----------CCCCh---hHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 002975 604 GLISEGWKHFRSMYDEHG----------IVQRM---EHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGAC 668 (861)
Q Consensus 604 g~~~~a~~~~~~m~~~~~----------~~p~~---~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~ 668 (861)
+++++|..+++.+.+... -.|+. ..+..++..+...|++.+|++.++++. .+-|..++..+...+
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~ 460 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIY 460 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 555555555555543111 01211 223334555566666666666666653 233556666666666
Q ss_pred HHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 669 RVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 669 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+..|....|+..++.+..++|++......++.++.+.|+|++|.++.+.+.+
T Consensus 461 ~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 461 LARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 6667777777766666666776666666666666667777776666655544
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.69 E-value=2.9e-11 Score=131.89 Aligned_cols=618 Identities=12% Similarity=0.138 Sum_probs=374.3
Q ss_pred hhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCcchhHHHHHHHHHcCCCCCcchHHHHHHHHhcCCChHHHH
Q 002975 54 LNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGDLNEAN 133 (861)
Q Consensus 54 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 133 (861)
...|+.++|.+++.+..... +.+...|..|-..+-..|+.+.+...+-.+....+. |...|..+-....+.|.++.|+
T Consensus 150 farg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHHH
Confidence 34488999999988888765 456677888888888888888877665555444433 5578888888888888899998
Q ss_pred HHHHhcC--CCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhhhhhhhhhhhccC
Q 002975 134 KIFKSMG--NKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGY 211 (861)
Q Consensus 134 ~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 211 (861)
-.|.+.- .+++....---...|-+.|+...|++-|.++.......|..-+..++...
T Consensus 228 ~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~--------------------- 286 (895)
T KOG2076|consen 228 YCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRV--------------------- 286 (895)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHH---------------------
Confidence 8888762 22343333344566778888888888888887653211212122222111
Q ss_pred CCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCC-----CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCC------
Q 002975 212 FDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTE-----KNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFL------ 280 (861)
Q Consensus 212 ~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~------ 280 (861)
+..|.. .++-+.|.+.++.... -+...+|.++..|.+...++.|......+......
T Consensus 287 -----------~~~~~~-~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~ 354 (895)
T KOG2076|consen 287 -----------AHYFIT-HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEW 354 (895)
T ss_pred -----------HHHHHH-hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhh
Confidence 111111 2222344444433322 12334556666666666666666666665541111
Q ss_pred ----------------CCcccHH----HHHHHHhccCCchHHHHHHHHHHHhC--CCCccchHHHHHHHHHhCCCCCCHH
Q 002975 281 ----------------PDRFTLS----GVVSACSELELFTSGKQLHSWAIRTG--LALDVCVGCSLVDMYAKCTVDGSVD 338 (861)
Q Consensus 281 ----------------pd~~t~~----~ll~a~~~~~~~~~a~~i~~~~~~~g--~~~~~~~~~~li~~y~~~g~~g~~~ 338 (861)
|+...|. -+.-++......+....+...+.... +.-++..+.-+.++|...|. +.
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~---~~ 431 (895)
T KOG2076|consen 355 DTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGK---YK 431 (895)
T ss_pred hhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhccc---HH
Confidence 2222222 12233445566666666777777766 34456678888899999777 99
Q ss_pred HHHHHHhccCCC----CcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCC-hhhHHHHHHHhcccCChHHHHHHHHH
Q 002975 339 DSRKVFDRMLDH----NVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPN-HFTFASVLKACGNLLDSNVAEQVYTH 413 (861)
Q Consensus 339 ~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~ 413 (861)
+|.++|..+... +...|-.+...|...|. .++|.+.|.+.... .|+ ...-.++-..+.+.|+.++|.+++..
T Consensus 432 ~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e-~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 432 EALRLLSPITNREGYQNAFVWYKLARCYMELGE-YEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred HHHHHHHHHhcCccccchhhhHHHHHHHHHHhh-HHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 999999988553 56789999999999998 99999999998774 453 33445566677888999999999888
Q ss_pred HH--------HcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCC--------------------------CeehHHH
Q 002975 414 AV--------KRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEK--------------------------NLVSYNT 459 (861)
Q Consensus 414 ~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------------------------~~~~~~~ 459 (861)
+. ..+..|+....--..+.|.+.|+.++=..+-..|..+ .......
T Consensus 509 ~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~ 588 (895)
T KOG2076|consen 509 IINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQ 588 (895)
T ss_pred ccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHH
Confidence 53 2334555556666777888888877744443333110 1111222
Q ss_pred HHHHHHhcCChhHHH------HHHHHHhhcCCCCCHH--HHHHHHHHhhcccchHHHHHHHHHHHHhCC--CCch---hH
Q 002975 460 MVDAYAKNLNSEKAF------ELLHEIEDTGVGTSAY--TFASLLSGASSIGAIGKGEQIHARIIKSGF--ESNH---CI 526 (861)
Q Consensus 460 li~~~~~~g~~~~A~------~l~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~--~~~~---~~ 526 (861)
.+.+-.+.++..... ..+.--...|+.-+.. -+.-++...++.++.++|..+...+..... .++. ..
T Consensus 589 ~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l 668 (895)
T KOG2076|consen 589 IIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKEL 668 (895)
T ss_pred HHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHH
Confidence 233333322211111 1111111223333322 345566778888999999988887766432 2222 23
Q ss_pred HHHHHHHHHccCCHHHHHHHHHhccCC-----Cc---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--HHHHHH
Q 002975 527 YNALISMYSRCANVEAAFQVFKEMEDR-----NV---ISWTSMITGFAKHGFAARALEIFYKMLADGIKPNG--ITYIAV 596 (861)
Q Consensus 527 ~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~l 596 (861)
-...+.+....+++..|...++.|... ++ ..||...+.+.+.|+-.--..++..... ..|+. ......
T Consensus 669 ~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~ 746 (895)
T KOG2076|consen 669 QFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIY 746 (895)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeee
Confidence 344556667788899998888887743 33 4777766777776654444444444333 23332 222222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHH-HHHHHhh----------hcCCHHHHHHHHHhCC--CCC--CHHHH
Q 002975 597 LSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYA-CMVDLLG----------RSGSLTEALEFIRSMP--LSA--DVLVW 661 (861)
Q Consensus 597 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-~l~~~~~----------r~g~~~eA~~~~~~~~--~~p--~~~~~ 661 (861)
..-....+.+.-|++++-... ...|+...++ ||.-++. |.-.+-.+..++++.. ..+ ...+.
T Consensus 747 gh~~~~~~s~~~Al~~y~ra~---~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~ 823 (895)
T KOG2076|consen 747 GHNLFVNASFKHALQEYMRAF---RQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAF 823 (895)
T ss_pred chhHhhccchHHHHHHHHHHH---HhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 222345677888888665554 3445533332 2222221 2223444555654431 122 45677
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhccCCCCC------------chHHHHHHHHHHcCChhHHHHHHHH
Q 002975 662 RTFLGACRVHGDTELGKHAAEMILEQDPQDP------------AAHILLSNLYASAGHWEYVANIRKR 717 (861)
Q Consensus 662 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------------~~~~~L~~~y~~~g~~~~a~~~~~~ 717 (861)
..++.+|...|-+..|+..|+++++..|.+. .+-..|.-||-..|+..-|..+.++
T Consensus 824 YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 824 YNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 7899999999999999999999999976532 2344678899999999999888763
No 29
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.69 E-value=2.1e-12 Score=139.51 Aligned_cols=567 Identities=12% Similarity=0.043 Sum_probs=331.1
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCcchhHHHHHHHHHcCCCCCcchHHHHHHHHhcCCChHHHHHHHHhcCCCC
Q 002975 64 FTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGDLNEANKIFKSMGNKR 143 (861)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 143 (861)
.++..+...|+.|+.+||.++|..|+..|+.+.|- +|..|.-....-+...++.++......++.+.+. .|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------ep 81 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------EP 81 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC--------CC
Confidence 34566778899999999999999999999999998 9999988888888899999999999999887655 37
Q ss_pred CceeHHHHHHHHHhcCChhHHHHHHHH-HH-------HcCCCCCcccHHHH--------------HHHhcCCcchhhhhh
Q 002975 144 DIVSWSSMISSYVNRGKQVDAIHMFVE-ML-------ELGFCPNEYCFSAV--------------IRACSNTENVAIGHI 201 (861)
Q Consensus 144 ~~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~t~~~l--------------l~~~~~~~~~~~a~~ 201 (861)
-..+|..|..+|.+.|+... ++..++ |. ..|+.....-|-.- +......|-++.+.+
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999998765 332222 22 12322111111111 111222233333333
Q ss_pred hhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCC-CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCC
Q 002975 202 IYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTE-KNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFL 280 (861)
Q Consensus 202 ~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 280 (861)
++..+....... ++.. .+.-.......+++-........+ ++..++.+++..-.-+|+.+.|..++.+|.+.|+.
T Consensus 161 ll~~~Pvsa~~~--p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 161 LLAKVPVSAWNA--PFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHhhCCcccccc--hHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 333332222001 1111 122222212233333333333333 78999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCcccHHHHHH
Q 002975 281 PDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIIT 360 (861)
Q Consensus 281 pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~~li~ 360 (861)
.+..-|..+|-+ .++......+..-|...|+.|+..++...+-...+.|. ...+....+.-..-....+..+..
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~---t~~~~e~sq~~hg~tAavrsaa~r 310 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ---TKYGEEGSQLAHGFTAAVRSAACR 310 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh---hhhcccccchhhhhhHHHHHHHhc
Confidence 999888888765 78888888899999999999999998877766655333 332222111100001112222222
Q ss_pred HHHhcCC----ChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHc
Q 002975 361 GYVQSGG----RDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARS 436 (861)
Q Consensus 361 ~~~~~g~----~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~ 436 (861)
+...+.. ...-....+.+..-.|+......|..... ....|.-+..+++-+.+..-- ...-+.-+++|.
T Consensus 311 g~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt----~r~s~~~V~a~~-- 383 (1088)
T KOG4318|consen 311 GLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPT----LRDSGQNVDAFG-- 383 (1088)
T ss_pred ccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCc----cccCcchHHHHH--
Confidence 2111111 01111222222222344333333322222 223566677777766664322 111122222221
Q ss_pred CCHHHHHHHHHhcCCCCee-hHHHHHHHHHh---cCChhHHHHHHHHH------------hhc----CCCC-------CH
Q 002975 437 GRMEDARKAFESLFEKNLV-SYNTMVDAYAK---NLNSEKAFELLHEI------------EDT----GVGT-------SA 489 (861)
Q Consensus 437 g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~---~g~~~~A~~l~~~m------------~~~----g~~p-------~~ 489 (861)
+.+.++|.+...+... .++ .-.+... .....+..++.... ... -..| -.
T Consensus 384 ---~~lrqyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~ir 459 (1088)
T KOG4318|consen 384 ---ALLRQYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIR 459 (1088)
T ss_pred ---HHHHHHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHH
Confidence 2334445444333221 111 1111111 11111122211111 100 0111 11
Q ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCc------hHHHHHHH
Q 002975 490 YTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNV------ISWTSMIT 563 (861)
Q Consensus 490 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~------~~~~~li~ 563 (861)
..-+.++..|++.-+..+++..-+.....-+. ..|..||+.+....+.++|....++...+|. .-+..+..
T Consensus 460 di~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~d 536 (1088)
T KOG4318|consen 460 DIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQD 536 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHH
Confidence 23345666777776777766555444433222 5788999999999999999999999886654 45677888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC-CCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCC
Q 002975 564 GFAKHGFAARALEIFYKMLADGI-KPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGS 641 (861)
Q Consensus 564 ~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~ 641 (861)
.+.+.+....+..+++++.+.-. .|+ ..++.-++..-...|+.+.-.++++-+. .+|+.-+ .-++....+.++
T Consensus 537 LL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lv-slgl~et----gPl~~vhLrkdd 611 (1088)
T KOG4318|consen 537 LLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILV-SLGLSET----GPLWMVHLRKDD 611 (1088)
T ss_pred HHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHH-Hhhhhhc----ccceEEEeeccc
Confidence 88999999999999999987532 333 4567778888888899888888888776 5555442 345566677888
Q ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 002975 642 LTEALEFIRSMP--LSADVLVWRTFLGACR 669 (861)
Q Consensus 642 ~~eA~~~~~~~~--~~p~~~~~~~ll~~~~ 669 (861)
...|.+..+... .+|.+.....+....+
T Consensus 612 ~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ 641 (1088)
T KOG4318|consen 612 QSAAQEAPEPEEQKYKPYPKDLEGLCRLVY 641 (1088)
T ss_pred hhhhhhcchHHHHHhcCChHHHHHHHHHHH
Confidence 888777765442 3444443344444433
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=1.4e-12 Score=129.59 Aligned_cols=444 Identities=15% Similarity=0.139 Sum_probs=271.6
Q ss_pred ceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhc--CCcchhhhh-hhhhhhhhccCCCCchhHHHH
Q 002975 145 IVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACS--NTENVAIGH-IIYGFLLKCGYFDSDVCVGCA 221 (861)
Q Consensus 145 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~~ 221 (861)
+++=|.|+. ...+|...++.-+|+.|+..|+..+...--.+++..+ ...++-.++ +.|-.+.+.| +....+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~--E~S~~sW-- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG--EDSTSSW-- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc--ccccccc--
Confidence 445555555 3456788888888999988888777776666665433 222322222 2333444444 2233333
Q ss_pred HHHHhhhCCCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchH
Q 002975 222 LIDMFVKGSVDLESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTS 301 (861)
Q Consensus 222 l~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 301 (861)
| .|++.+ -+|+ ...++..++..||.|+++--..+.|.+++++-.....+.+..+||.+|.+.+- ..
T Consensus 191 ------K-~G~vAd--L~~E-~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~ 256 (625)
T KOG4422|consen 191 ------K-SGAVAD--LLFE-TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SV 256 (625)
T ss_pred ------c-cccHHH--HHHh-hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hc
Confidence 2 555444 4444 44456789999999999999999999999999988889999999999987543 33
Q ss_pred HHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCChHHHHHHHHHHhh
Q 002975 302 GKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQ 381 (861)
Q Consensus 302 a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~ 381 (861)
++++..+|+.....||..++|+++...++.|+ ++.|++ .|++++.+|++
T Consensus 257 ~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~---F~~ar~----------------------------aalqil~EmKe 305 (625)
T KOG4422|consen 257 GKKLVAEMISQKMTPNLFTFNALLSCAAKFGK---FEDARK----------------------------AALQILGEMKE 305 (625)
T ss_pred cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcc---hHHHHH----------------------------HHHHHHHHHHH
Confidence 48899999999999999999999999999887 777653 34455555555
Q ss_pred CCCCCChhhHHHHHHHhcccCChHH-HHHHHHHHHH----cCCC----CCcchhhHHHHHHHHcCCHHHHHHHHHhcCCC
Q 002975 382 GQVAPNHFTFASVLKACGNLLDSNV-AEQVYTHAVK----RGRA----LDDCVGNSLISMYARSGRMEDARKAFESLFEK 452 (861)
Q Consensus 382 ~g~~p~~~t~~~ll~a~~~~~~~~~-a~~i~~~~~~----~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 452 (861)
-|+.|...+|..+|..+.+.++..+ +..+..++.. ..+. .|...+...++.+.+..+.+-|.++-.-....
T Consensus 306 iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg 385 (625)
T KOG4422|consen 306 IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTG 385 (625)
T ss_pred hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Confidence 5555555555555555555444422 2222222211 1111 12223333444444555555554444333211
Q ss_pred --------C---eehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCC
Q 002975 453 --------N---LVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFE 521 (861)
Q Consensus 453 --------~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 521 (861)
+ ..-|..+....++....+..+..|..|.-.-+-|+..+...+++|....+.++-..+++..++..|..
T Consensus 386 ~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 386 DNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred CchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 1 12355677777888888888999999988888899999999999999999999999999988887754
Q ss_pred CchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhc-CChHHH-HHHHHHHHHcCCCCChHHHHHHHHH
Q 002975 522 SNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKH-GFAARA-LEIFYKMLADGIKPNGITYIAVLSA 599 (861)
Q Consensus 522 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A-~~~~~~m~~~g~~p~~~t~~~ll~a 599 (861)
.......-+...+++.. ..|+...-..+-...++. -++.++ ...-.+|.+....|. ..+.++..
T Consensus 466 ~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t--~l~~ia~L 531 (625)
T KOG4422|consen 466 FRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPAT--SLNCIAIL 531 (625)
T ss_pred hhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChh--HHHHHHHH
Confidence 44333333333333221 012212111111111110 112222 122344555444443 34444555
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCChhHHH---HHHHHhhhcCCHHHHHHHHHhC
Q 002975 600 CSHAGLISEGWKHFRSMYDEHGIVQRMEHYA---CMVDLLGRSGSLTEALEFIRSM 652 (861)
Q Consensus 600 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~---~l~~~~~r~g~~~eA~~~~~~~ 652 (861)
+.+.|..++|+++|....+...-.|.....+ -+++.-.+....-.|...++-|
T Consensus 532 l~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 532 LLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6788888888888888754544444444444 4455556677777888877776
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.67 E-value=6e-12 Score=144.85 Aligned_cols=437 Identities=11% Similarity=0.045 Sum_probs=244.7
Q ss_pred HhcCCcchhHHHHHHHHHcCCCCCcchHHHHHHHHhcCCChHHHHHHHHhcCCCCCcee-HHHH--HHHHHhcCChhHHH
Q 002975 89 IRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGDLNEANKIFKSMGNKRDIVS-WSSM--ISSYVNRGKQVDAI 165 (861)
Q Consensus 89 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~l--i~~~~~~g~~~~A~ 165 (861)
.+.|++..|...+..+.+..+.....++ .++..+...|+.++|+..+++.-. |+... +..+ ...|...|++++|+
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3555666666666665555433212233 555666666777777777766653 32222 2222 33555667777777
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhhhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCC
Q 002975 166 HMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTE 245 (861)
Q Consensus 166 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~ 245 (861)
++|+++.+.. |.+..++..++..|.. .++.++|++.++++..
T Consensus 123 ely~kaL~~d-------------------------------------P~n~~~l~gLa~~y~~-~~q~~eAl~~l~~l~~ 164 (822)
T PRK14574 123 ALWQSSLKKD-------------------------------------PTNPDLISGMIMTQAD-AGRGGVVLKQATELAE 164 (822)
T ss_pred HHHHHHHhhC-------------------------------------CCCHHHHHHHHHHHhh-cCCHHHHHHHHHHhcc
Confidence 7777766532 3333344444455555 5666666666666554
Q ss_pred CCcchHHHHHHHHHh--cCCchHHHHHHHHHHHCCCCCC-cccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHH
Q 002975 246 KNTVGWTLMITRCTQ--LGCPRDAIRLFLDMILSGFLPD-RFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGC 322 (861)
Q Consensus 246 ~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 322 (861)
.+......+..++.. .++..+|++.++++.+. .|+ ...+...+.++.+.|-...|.++... .|+.++-.
T Consensus 165 ~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~ 236 (822)
T PRK14574 165 RDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAE 236 (822)
T ss_pred cCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHH
Confidence 332222223333333 44454577777777664 343 33445555566666655555544433 12222111
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhC-CCCCCh-h----hHHHHHH
Q 002975 323 SLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQG-QVAPNH-F----TFASVLK 396 (861)
Q Consensus 323 ~li~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~-g~~p~~-~----t~~~ll~ 396 (861)
.....- .+.|.+..+.-..++.. .-.-|. . .+.|+.-++.+... +-.|.. . ...-.+-
T Consensus 237 ~~~~l~--------~~~~a~~vr~a~~~~~~----~~~r~~---~-~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~ 300 (822)
T PRK14574 237 HYRQLE--------RDAAAEQVRMAVLPTRS----ETERFD---I-ADKALADYQNLLTRWGKDPEAQADYQRARIDRLG 300 (822)
T ss_pred HHHHHH--------HHHHHHHHhhccccccc----chhhHH---H-HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHH
Confidence 111100 22222222111100000 000000 1 45555556665431 222321 1 1223455
Q ss_pred HhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCC---------CeehHHHHHHHHHhc
Q 002975 397 ACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEK---------NLVSYNTMVDAYAKN 467 (861)
Q Consensus 397 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~ 467 (861)
++...++..++.+.++.+...|.+....+..++.++|...++.++|..+|+++... +......|..+|...
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 66777888888888888888887766778888888888888888888888887332 122246678888888
Q ss_pred CChhHHHHHHHHHhhcCC-------------CCCHHH-HHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 002975 468 LNSEKAFELLHEIEDTGV-------------GTSAYT-FASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISM 533 (861)
Q Consensus 468 g~~~~A~~l~~~m~~~g~-------------~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 533 (861)
+++++|..+++++.+... .||-.. +..+...+...|++.+|++.++.+.... +-|..+...+.+.
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v 459 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASI 459 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 889999888888876311 122222 2334455667777777777777776654 6677777777777
Q ss_pred HHccCCHHHHHHHHHhcc--CC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHH
Q 002975 534 YSRCANVEAAFQVFKEME--DR-NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGIT 592 (861)
Q Consensus 534 y~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 592 (861)
+...|.+.+|++.++... .| +..+....+.++...|++.+|..+.+.+.+ ..|+...
T Consensus 460 ~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~ 519 (822)
T PRK14574 460 YLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDIP 519 (822)
T ss_pred HHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCchh
Confidence 777777777777776554 23 344555566666677777777777777777 5566543
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.66 E-value=2.7e-10 Score=119.50 Aligned_cols=507 Identities=13% Similarity=0.089 Sum_probs=362.0
Q ss_pred hhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 002975 200 HIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTE--K-NTVGWTLMITRCTQLGCPRDAIRLFLDMIL 276 (861)
Q Consensus 200 ~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 276 (861)
..++...++. +|.++..|-.-+. .-..++|+.++.+..+ | +.. |.-+|++..-++.|..+++..++
T Consensus 366 ~RVlRKALe~--iP~sv~LWKaAVe-----lE~~~darilL~rAveccp~s~d----LwlAlarLetYenAkkvLNkaRe 434 (913)
T KOG0495|consen 366 KRVLRKALEH--IPRSVRLWKAAVE-----LEEPEDARILLERAVECCPQSMD----LWLALARLETYENAKKVLNKARE 434 (913)
T ss_pred HHHHHHHHHh--CCchHHHHHHHHh-----ccChHHHHHHHHHHHHhccchHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444443 4666666665555 3334556666666554 2 223 33455666677778888777766
Q ss_pred CCCCCCcccHHHHHHHHhccCCchHHHHHHHHHH----HhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCC---
Q 002975 277 SGFLPDRFTLSGVVSACSELELFTSGKQLHSWAI----RTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLD--- 349 (861)
Q Consensus 277 ~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~----~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~--- 349 (861)
. ++.+...+.+.-..=-..|+.+....|....+ ..|+..+..-|-.=...+-..|. +-.+..+......
T Consensus 435 ~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags---v~TcQAIi~avigigv 510 (913)
T KOG0495|consen 435 I-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS---VITCQAIIRAVIGIGV 510 (913)
T ss_pred h-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC---hhhHHHHHHHHHhhcc
Confidence 4 55566666655555556677777777665543 34555544444333333333333 5555555544421
Q ss_pred --CC-cccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchh
Q 002975 350 --HN-VMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVG 426 (861)
Q Consensus 350 --~~-~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 426 (861)
.| -.+|+.-...|.+.+. ++-|..+|....+. .+-+...|.-....=-..|..+....+++.++..- +-....+
T Consensus 511 Eeed~~~tw~~da~~~~k~~~-~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lw 587 (913)
T KOG0495|consen 511 EEEDRKSTWLDDAQSCEKRPA-IECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILW 587 (913)
T ss_pred ccchhHhHHhhhHHHHHhcch-HHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHH
Confidence 22 3578888888888887 88888888887663 23345556555555556688888888888887764 3444555
Q ss_pred hHHHHHHHHcCCHHHHHHHHHhcCCC---CeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhccc
Q 002975 427 NSLISMYARSGRMEDARKAFESLFEK---NLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIG 503 (861)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 503 (861)
-....-+-..|++..|+.++....+. +...|-+-+..-..+.++++|..+|.+... ..|+...|.--+..---++
T Consensus 588 lM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld 665 (913)
T KOG0495|consen 588 LMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLD 665 (913)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhh
Confidence 55666677789999999998887443 445788888888899999999999998885 4566666666666666678
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--CC-chHHHHHHHHHHhcCChHHHHHHHHH
Q 002975 504 AIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED--RN-VISWTSMITGFAKHGFAARALEIFYK 580 (861)
Q Consensus 504 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~ 580 (861)
..++|.++++..++. ++.-...|-.+...|-..++++.|.+.|..-.+ |+ +..|-.|...--+.|+.-+|..+|++
T Consensus 666 ~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 666 NVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred hHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 999999999888886 355577888999999999999999999987664 44 45788787777888999999999999
Q ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHH
Q 002975 581 MLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLV 660 (861)
Q Consensus 581 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~ 660 (861)
.+-.+ +-|...|...+..-.+.|..++|..+..+..++ .+.+-..|.--|-+..+.++-..+.+.+++... |+-+
T Consensus 745 arlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce~--dphV 819 (913)
T KOG0495|consen 745 ARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH--DPHV 819 (913)
T ss_pred HHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhccC--Cchh
Confidence 88854 335678899999999999999999988887643 344556788888899999988888888888644 4455
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeEEEe
Q 002975 661 WRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSWIEA 734 (861)
Q Consensus 661 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~ 734 (861)
.-+....+.....++.|..-|+++++.+|++..++..+-..+...|.-++-.++++..... .+.-|..|+-+
T Consensus 820 llaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~av 891 (913)
T KOG0495|consen 820 LLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHH
Confidence 5667777788888999999999999999999999999999999999999999998866542 22335666543
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.63 E-value=8.9e-10 Score=115.68 Aligned_cols=490 Identities=13% Similarity=0.097 Sum_probs=379.1
Q ss_pred HHhcCCcchhhhhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCc
Q 002975 188 RACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTE---KNTVGWTLMITRCTQLGCP 264 (861)
Q Consensus 188 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~ 264 (861)
++.....+.+.|+-++..+++.- +.....|.+|.. ...++.|.+++....+ .+...|-+-...=-.+|+.
T Consensus 384 KaAVelE~~~darilL~rAvecc--p~s~dLwlAlar-----LetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~ 456 (913)
T KOG0495|consen 384 KAAVELEEPEDARILLERAVECC--PQSMDLWLALAR-----LETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNV 456 (913)
T ss_pred HHHHhccChHHHHHHHHHHHHhc--cchHHHHHHHHH-----HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCH
Confidence 44445566666888888888763 666666665544 4456788888876654 4677787776666778888
Q ss_pred hHHHHHHHH----HHHCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCc--cchHHHHHHHHHhCCCCCCHH
Q 002975 265 RDAIRLFLD----MILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALD--VCVGCSLVDMYAKCTVDGSVD 338 (861)
Q Consensus 265 ~~A~~l~~~----m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~--~~~~~~li~~y~~~g~~g~~~ 338 (861)
+....+..+ +...|+..+...+..=-.+|-..|..-.+..|...++..|++.. ..+++.-.+.+.+.+. ++
T Consensus 457 ~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~---~~ 533 (913)
T KOG0495|consen 457 DMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPA---IE 533 (913)
T ss_pred HHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcch---HH
Confidence 888777654 56778888888888888888888998888999888888887543 3466666677777666 99
Q ss_pred HHHHHHhccCC---CCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHH
Q 002975 339 DSRKVFDRMLD---HNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAV 415 (861)
Q Consensus 339 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 415 (861)
-|+.+|....+ .+...|...+..--..|. .++-..+|++.... ++-....+....+..-..|+...|+.++..+.
T Consensus 534 carAVya~alqvfp~k~slWlra~~~ek~hgt-~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af 611 (913)
T KOG0495|consen 534 CARAVYAHALQVFPCKKSLWLRAAMFEKSHGT-RESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAF 611 (913)
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHhcCc-HHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 99999887755 355678777766666677 88999999998875 33344455555566667799999999999998
Q ss_pred HcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcC--CCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCH-HHH
Q 002975 416 KRGRALDDCVGNSLISMYARSGRMEDARKAFESLF--EKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSA-YTF 492 (861)
Q Consensus 416 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~ 492 (861)
+.. +.+..++-+-+..-....+++.|+.+|.+.. .+....|.--+..---.++.++|++++++..+. -|+- ..|
T Consensus 612 ~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~ 688 (913)
T KOG0495|consen 612 EAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLW 688 (913)
T ss_pred HhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHH
Confidence 876 4477888899999999999999999999874 345567777677777789999999999888764 4554 467
Q ss_pred HHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcC
Q 002975 493 ASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHG 569 (861)
Q Consensus 493 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 569 (861)
..+...+-+.++++.|...|..-.+. ++..+..|-.|.+.=-+.|.+-.|..+|+...- .|...|-..|..-.+.|
T Consensus 689 lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~g 767 (913)
T KOG0495|consen 689 LMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAG 767 (913)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcC
Confidence 77778888899999999888766554 356678899999999999999999999998763 46789999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHH
Q 002975 570 FAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFI 649 (861)
Q Consensus 570 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~ 649 (861)
..++|..+..+.++. ++.+...|.--|...-+.++-......++ ...-|..+.-.+..++....+++.|.+.|
T Consensus 768 n~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALk------kce~dphVllaia~lfw~e~k~~kar~Wf 840 (913)
T KOG0495|consen 768 NKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALK------KCEHDPHVLLAIAKLFWSEKKIEKAREWF 840 (913)
T ss_pred CHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHH------hccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888875 44456778777777766666444444433 23456666777888999999999999999
Q ss_pred HhCC-CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 002975 650 RSMP-LSAD-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSN 700 (861)
Q Consensus 650 ~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 700 (861)
.+.. ..|| ..+|--+...+..||.-+.-+.++.+....+|.....+...+.
T Consensus 841 ~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 841 ERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred HHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 9874 4454 5688889999999999999999999999999998777766543
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.58 E-value=1.5e-12 Score=129.99 Aligned_cols=515 Identities=14% Similarity=0.111 Sum_probs=279.9
Q ss_pred chHHHHHHHhhcCChhHHHHHHHHHHhC----CCCCChhhHHHHHHHHHhcCCcchhHHHHHHHHHcCCCCCcchH-HHH
Q 002975 45 PLSNRLIYHLNDGRVQKAIFTLDLMTQK----GNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVIL-NSL 119 (861)
Q Consensus 45 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l 119 (861)
.+...+-..-..|+-+.|+.-.++-... +...+...+..|.+-|.......+|+..++.+++...-|+.... -.+
T Consensus 164 ~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmni 243 (840)
T KOG2003|consen 164 DFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNI 243 (840)
T ss_pred hHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeee
Confidence 4555555556677777776655543322 33344455556666676677788899889988887766665433 234
Q ss_pred HHHHhcCCChHHHHHHHHhc-CCCCC------ceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhcC
Q 002975 120 ISLYSKCGDLNEANKIFKSM-GNKRD------IVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSN 192 (861)
Q Consensus 120 l~~~~~~g~~~~A~~~~~~~-~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 192 (861)
-+.+.+.+.+..|++.++-. .+.|+ ....|.+-..+.+.|++++|+.-|+...+. .|+..+--.++-.+..
T Consensus 244 gni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~ 321 (840)
T KOG2003|consen 244 GNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFA 321 (840)
T ss_pred cceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhhee
Confidence 56678888899998887543 11122 123455555678899999999999887664 5776654444444455
Q ss_pred CcchhhhhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCCCCcchHHH-----HHHHHHhcC--Cch
Q 002975 193 TENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEKNTVGWTL-----MITRCTQLG--CPR 265 (861)
Q Consensus 193 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~-----li~~~~~~g--~~~ 265 (861)
.|+.+..++.|..++... ..+|-.- |.+ . -..|+....|- ++.-.-+.. +.+
T Consensus 322 i~d~ekmkeaf~kli~ip-~~~dddk-------yi~-~------------~ddp~~~ll~eai~nd~lk~~ek~~ka~ae 380 (840)
T KOG2003|consen 322 IGDAEKMKEAFQKLIDIP-GEIDDDK-------YIK-E------------KDDPDDNLLNEAIKNDHLKNMEKENKADAE 380 (840)
T ss_pred cCcHHHHHHHHHHHhcCC-CCCCccc-------ccC-C------------cCCcchHHHHHHHhhHHHHHHHHhhhhhHH
Confidence 678888888888887654 1111110 111 0 00111111111 111111111 111
Q ss_pred HHHHHHHHHHHCCCCCCcc-cHHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHH
Q 002975 266 DAIRLFLDMILSGFLPDRF-TLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVF 344 (861)
Q Consensus 266 ~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~ 344 (861)
+++-.-.++..--+.||-. -|...+..+-.....+.|..+ .. .-..-|.+.|+ ++.|.+++
T Consensus 381 k~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dl-------------ei--~ka~~~lk~~d---~~~aieil 442 (840)
T KOG2003|consen 381 KAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDL-------------EI--NKAGELLKNGD---IEGAIEIL 442 (840)
T ss_pred HHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhh-------------hh--hHHHHHHhccC---HHHHHHHH
Confidence 2222112222222233311 111111111111111111111 00 11223566666 88888777
Q ss_pred hccCCCCcccH-----HHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCC
Q 002975 345 DRMLDHNVMSW-----TAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGR 419 (861)
Q Consensus 345 ~~~~~~~~~~~-----~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~ 419 (861)
.-...+|..+- |.-.--|.+-|+++..|.+.-+...... +-|....+.--+.....|+++.|.+.+.+.+...-
T Consensus 443 kv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda 521 (840)
T KOG2003|consen 443 KVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA 521 (840)
T ss_pred HHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch
Confidence 76665543322 2222334445555666666555443221 11111111111223345777778777777766543
Q ss_pred CCCcchhhHHHHHHHHcCCHHHHHHHHHhc---CCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHH
Q 002975 420 ALDDCVGNSLISMYARSGRMEDARKAFESL---FEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLL 496 (861)
Q Consensus 420 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 496 (861)
......||. .-.+-+.|++++|+++|-.+ ...+......+.+.|-...+...|++++-+.... ++.|+..++.|.
T Consensus 522 sc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~ 599 (840)
T KOG2003|consen 522 SCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLA 599 (840)
T ss_pred HHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHH
Confidence 333333332 22355677777777777665 2344555556666677777777777777555432 444566666777
Q ss_pred HHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhc--cCCCchHHHHHHHH-HHhcCChHH
Q 002975 497 SGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEM--EDRNVISWTSMITG-FAKHGFAAR 573 (861)
Q Consensus 497 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~-~~~~g~~~~ 573 (861)
..|-+.|+-.+|.+.|-.--+. ++.+..+...|...|....-+++|+..|++. .+|+..-|..||.. +.+.|++.+
T Consensus 600 dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred HHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHH
Confidence 7777777777777666443332 4666677777777777777777777777654 36777777776644 345677777
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Q 002975 574 ALEIFYKMLADGIKPNGITYIAVLSACSHAGL 605 (861)
Q Consensus 574 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 605 (861)
|+++|++.... ++-|..+..-|+..|...|.
T Consensus 679 a~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 679 AFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 77777776653 34455566666666665554
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.55 E-value=1.2e-14 Score=150.38 Aligned_cols=253 Identities=17% Similarity=0.189 Sum_probs=110.6
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHH-HHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCC
Q 002975 461 VDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFAS-LLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCAN 539 (861)
Q Consensus 461 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 539 (861)
...+.+.|++++|++++++......+|+...|-. +...+...++.+.|.+.++.+...+ +.++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 4455566666667666654443322344333333 3334455667777777777776654 3356667777776 68888
Q ss_pred HHHHHHHHHhcc--CCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002975 540 VEAAFQVFKEME--DRNVISWTSMITGFAKHGFAARALEIFYKMLADG-IKPNGITYIAVLSACSHAGLISEGWKHFRSM 616 (861)
Q Consensus 540 ~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 616 (861)
+++|.+++.... .++...+..++..+.+.|+++++..+++++.... .+++...|..+...+.+.|+.++|...+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999988887664 3566777888888889999999999999887643 2345667788888889999999999999988
Q ss_pred HhhcCCCCC-hhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCc
Q 002975 617 YDEHGIVQR-MEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPA 693 (861)
Q Consensus 617 ~~~~~~~p~-~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 693 (861)
.+ ..|+ ......++.++...|+.+++.++++... .+.|+..|..+..++...|+.+.|...++++++.+|+|+.
T Consensus 173 l~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 83 3564 6677888899999999998877776653 2445668999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 694 AHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 694 ~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
....++.++...|+.++|.++++..
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccc
Confidence 9999999999999999999998765
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.55 E-value=1.5e-11 Score=134.09 Aligned_cols=327 Identities=14% Similarity=0.134 Sum_probs=206.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhc---CCCCeehHHHHHHHHHhcCChhHHHHHHH
Q 002975 402 LDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESL---FEKNLVSYNTMVDAYAKNLNSEKAFELLH 478 (861)
Q Consensus 402 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 478 (861)
|++++|..++.++++.. +.....|..|...|-..|+.+++...+--. ...|...|..+..-..+.|++++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 66666666666666554 344455556666666666666665554332 23344556666666666666666666666
Q ss_pred HHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHH----HHHHHHccCCHHHHHHHHHhccC--
Q 002975 479 EIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNA----LISMYSRCANVEAAFQVFKEMED-- 552 (861)
Q Consensus 479 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----li~~y~~~g~~~~A~~~~~~~~~-- 552 (861)
+..+.. +++...+---...|-+.|+...|..-+.++.....+.|..-... .+..|...++-+.|.+.++....
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 665442 23333333444455566666666666666655432222222222 23444555555666666655442
Q ss_pred ---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcC---------------------------CCCChHHHHHHHHHHHh
Q 002975 553 ---RNVISWTSMITGFAKHGFAARALEIFYKMLADG---------------------------IKPNGITYIAVLSACSH 602 (861)
Q Consensus 553 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------------------~~p~~~t~~~ll~a~~~ 602 (861)
-+...++.++..|.+..+++.|......+.... +.++...+ -+.-++.+
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~ 389 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVH 389 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhc
Confidence 123455666666666666666666666655511 22222121 12222333
Q ss_pred cCCHHHHHHHHHHHHhhcC--CCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHhCCHHHH
Q 002975 603 AGLISEGWKHFRSMYDEHG--IVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSA---DVLVWRTFLGACRVHGDTELG 677 (861)
Q Consensus 603 ~g~~~~a~~~~~~m~~~~~--~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p---~~~~~~~ll~~~~~~g~~~~a 677 (861)
....+....+..... ... ..-+...|.-+.++|...|++++|++++..+...| +..+|--++..+...|..+.|
T Consensus 390 L~~~e~~e~ll~~l~-~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 390 LKERELLEALLHFLV-EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred ccccchHHHHHHHHH-HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 333333332332232 445 33456789999999999999999999999885333 577999999999999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeEE
Q 002975 678 KHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSWI 732 (861)
Q Consensus 678 ~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i 732 (861)
.+.+++++.++|++..+-+.|+.+|...|+.++|.++...+-.-+-++.++|.|-
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 9999999999999999999999999999999999999998876666666778774
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.53 E-value=6.6e-12 Score=125.42 Aligned_cols=272 Identities=12% Similarity=0.160 Sum_probs=194.1
Q ss_pred HHHHcCCHHHHHHHHHhcCCCCeehHHH----H-HHHHHhc-CChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccch
Q 002975 432 MYARSGRMEDARKAFESLFEKNLVSYNT----M-VDAYAKN-LNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAI 505 (861)
Q Consensus 432 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~----l-i~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 505 (861)
-|.+.|+++.|.+++.-...+|..+-++ | +--|.+. .++..|.+.-+...... +-+....+.-.......|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 3567777777777776665554432222 1 1122232 34555555544443221 12222222222333456788
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhcc---CCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002975 506 GKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEME---DRNVISWTSMITGFAKHGFAARALEIFYKML 582 (861)
Q Consensus 506 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 582 (861)
++|.+.+...+...-.-....|| +.-.|-+.|++++|++.|-.+. ..++.....+.+.|-...+..+|++++-+..
T Consensus 507 dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 88888888777654222223333 3335678899999999987664 4677777788889999999999999998877
Q ss_pred HcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCCCHHH
Q 002975 583 ADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSADVLV 660 (861)
Q Consensus 583 ~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~~~~ 660 (861)
. +.| |+....-|...|-+.|+-.+|.+++..-- .-++-++++..-|...|....-.++|+.+|++.. ..|+..-
T Consensus 586 s--lip~dp~ilskl~dlydqegdksqafq~~ydsy--ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 586 S--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSY--RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred c--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcc--cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 6 566 46788889999999999999998776532 1344477888888888899999999999999975 8999999
Q ss_pred HHHHHHHH-HHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChh
Q 002975 661 WRTFLGAC-RVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWE 709 (861)
Q Consensus 661 ~~~ll~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~ 709 (861)
|.-++..| ++.|++..|...++......|.|......|..+....|.-+
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchh
Confidence 99999887 67799999999999999999999999999999988888643
No 38
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.53 E-value=8e-11 Score=127.60 Aligned_cols=532 Identities=12% Similarity=0.069 Sum_probs=262.0
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhhhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCC
Q 002975 166 HMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTE 245 (861)
Q Consensus 166 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~ 245 (861)
.++..|...|+.|+.+||..+|..||..|+.+.|- ++..|.-.. .+-...+++.++..... .++.+.+. +
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~-And~Enpk-------e 80 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKE-ANDAENPK-------E 80 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccc-cccccCCC-------C
Confidence 45667778888888888888888888888888887 887777666 67777788888887777 77766655 6
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHH-HHH-------CCCCCCcccHHHHHHHHhccC-C------chHHHHHHHHHH
Q 002975 246 KNTVGWTLMITRCTQLGCPRDAIRLFLD-MIL-------SGFLPDRFTLSGVVSACSELE-L------FTSGKQLHSWAI 310 (861)
Q Consensus 246 ~~~~~~~~li~~~~~~g~~~~A~~l~~~-m~~-------~g~~pd~~t~~~ll~a~~~~~-~------~~~a~~i~~~~~ 310 (861)
|...+|+.|..+|.+.|+... ++..++ |.. .|+.--..-|...+.+|-..- + ..--+.+++..+
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 777888888888888888655 333322 211 122111111111111111100 0 000111222222
Q ss_pred HhCCCCccchHHHHHHHHHhCCC--CCCHHHHHHHHhccCC-CCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCC
Q 002975 311 RTGLALDVCVGCSLVDMYAKCTV--DGSVDDSRKVFDRMLD-HNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPN 387 (861)
Q Consensus 311 ~~g~~~~~~~~~~li~~y~~~g~--~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~ 387 (861)
+.+....+..++.-...+.+... ...+++-........+ ++..++.+.+..-..+|+ .+.|..++.+|++.|++.+
T Consensus 160 kll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~-~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGD-VDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred HHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCc-hhhHHHHHHHHHHcCCCcc
Confidence 22211100000000000011000 0002222222222222 566666666666666666 6777777777777776666
Q ss_pred hhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhc
Q 002975 388 HFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKN 467 (861)
Q Consensus 388 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 467 (861)
..-|-.++-+ .++...++.++..|...|+.|+..++..-+-...+.|....+.+..+.-.--....+..+..+...+
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~ 315 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLAN 315 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhH
Confidence 6655555543 5666666666666666777776666665555554444322221111100000011122222221111
Q ss_pred C-----ChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHccCC
Q 002975 468 L-----NSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGF---ESNHCIYNALISMYSRCAN 539 (861)
Q Consensus 468 g-----~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~y~~~g~ 539 (861)
. ...-....+++..-.|+......|..... ....|.-+...++.+.+..-.. ..++..+..+
T Consensus 316 k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~--------- 385 (1088)
T KOG4318|consen 316 KRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGAL--------- 385 (1088)
T ss_pred HHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHH---------
Confidence 1 11111222222222333322222222211 1224555555555555532111 1112222222
Q ss_pred HHHHHHHHHhccCCCch-HHHHHHHHHHh---cCChHHHHHHHHHH------------HH----cCCCC-------ChHH
Q 002975 540 VEAAFQVFKEMEDRNVI-SWTSMITGFAK---HGFAARALEIFYKM------------LA----DGIKP-------NGIT 592 (861)
Q Consensus 540 ~~~A~~~~~~~~~~~~~-~~~~li~~~~~---~g~~~~A~~~~~~m------------~~----~g~~p-------~~~t 592 (861)
+.+.|.+...+... .++ .-.+... ..+..+..++.... .. .-..| -...
T Consensus 386 ---lrqyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi 461 (1088)
T KOG4318|consen 386 ---LRQYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDI 461 (1088)
T ss_pred ---HHHHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHH
Confidence 23334433332211 111 1111111 11111111111111 00 00111 0112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHH
Q 002975 593 YIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-----LSADVLVWRTFLGA 667 (861)
Q Consensus 593 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-----~~p~~~~~~~ll~~ 667 (861)
-..++..|...-+..+++..-+... .+-+ + ..|..||+.+.+..++++|..+..+.. ..-|..-+..+.+.
T Consensus 462 ~~ql~l~l~se~n~lK~l~~~ekye-~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dL 537 (1088)
T KOG4318|consen 462 ANQLHLTLNSEYNKLKILCDEEKYE-DLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDL 537 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHH
Confidence 2334444444444444443222221 2111 1 568999999999999999999998874 22244566677888
Q ss_pred HHHhCCHHHHHHHHHHHhc---cCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeE
Q 002975 668 CRVHGDTELGKHAAEMILE---QDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSW 731 (861)
Q Consensus 668 ~~~~g~~~~a~~~~~~~~~---~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 731 (861)
..+++....+..+.+...+ ..|.-......+-|--+..|+.+...+..+.+...|+.- .|.-|
T Consensus 538 L~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 538 LQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred HHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 8888888888877776665 334445566677778888999999999999888888765 34444
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.3e-10 Score=117.24 Aligned_cols=340 Identities=12% Similarity=0.084 Sum_probs=227.1
Q ss_pred CHHHHHHHHhccCCCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHH--HHHHHhcccCChHHHHHHHHH
Q 002975 336 SVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFA--SVLKACGNLLDSNVAEQVYTH 413 (861)
Q Consensus 336 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~i~~~ 413 (861)
..+.|+..|......-+..|.+.+...--... .+.+. ... .|...|...+. .+..++....+.+++.+-...
T Consensus 179 ~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-~e~~~----~l~-~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~ 252 (559)
T KOG1155|consen 179 LLSLAIDSFVEVVNRYPWFWSAWLELSELITD-IEILS----ILV-VGLPSDMHWMKKFFLKKAYQELHQHEEALQKKER 252 (559)
T ss_pred hHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-HHHHH----HHH-hcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38888888888776656666655443222222 22221 111 12222222222 233455555566777777777
Q ss_pred HHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHH
Q 002975 414 AVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFA 493 (861)
Q Consensus 414 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 493 (861)
....|++.+...-+-...+.-...+++.|+.+|+++.+.|+.- --|..||+
T Consensus 253 l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYR-----------------------------l~dmdlyS 303 (559)
T KOG1155|consen 253 LSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYR-----------------------------LDDMDLYS 303 (559)
T ss_pred HHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc-----------------------------chhHHHHh
Confidence 7777766665555544445555555555555555554333210 01333444
Q ss_pred HHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCC---chHHHHHHHHHHhcCC
Q 002975 494 SLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRN---VISWTSMITGFAKHGF 570 (861)
Q Consensus 494 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~ 570 (861)
.++-.-.....+.---+....+- +--+.|...+.+.|+-.++.++|...|+...+-| ...|+.|..-|....+
T Consensus 304 N~LYv~~~~skLs~LA~~v~~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKN 379 (559)
T KOG1155|consen 304 NVLYVKNDKSKLSYLAQNVSNID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKN 379 (559)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcc
Confidence 44432222111111111111111 2234567778888998999999999999887533 4689999999999999
Q ss_pred hHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHH
Q 002975 571 AARALEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEF 648 (861)
Q Consensus 571 ~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~ 648 (861)
...|++-+++.++ +.| |...|..|.++|.-.++..=|+-+|++.. .+.| |...|.+|.+.|.+-++++||++.
T Consensus 380 t~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKC 454 (559)
T KOG1155|consen 380 THAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKC 454 (559)
T ss_pred cHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHH
Confidence 9999999999998 556 67799999999999999999999999877 5556 667899999999999999999999
Q ss_pred HHhCCC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhc-------cCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 002975 649 IRSMPL--SADVLVWRTFLGACRVHGDTELGKHAAEMILE-------QDPQDPAAHILLSNLYASAGHWEYVANIRKRMK 719 (861)
Q Consensus 649 ~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~ 719 (861)
|++.-. .-+...+..|...+...++.++|.+.+++.++ .+|+-..+...|++-+.+.++|++|...-....
T Consensus 455 ykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 455 YKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 998742 33457888999999999999999999999887 445455566679999999999999988665443
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=8.2e-12 Score=132.04 Aligned_cols=242 Identities=12% Similarity=0.142 Sum_probs=129.6
Q ss_pred hhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHccCCHH-HHHHH
Q 002975 470 SEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSG--FESNHCIYNALISMYSRCANVE-AAFQV 546 (861)
Q Consensus 470 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~-~A~~~ 546 (861)
..+|+..|..... .+.-+......+..+|...+++++++.+|+.+.+.. .-.+..+|++.+--+-+.=.+. -|..+
T Consensus 335 ~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 4555555555322 222233444555556666666666666666655432 1123444544442221110000 01111
Q ss_pred HHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC
Q 002975 547 FKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR 625 (861)
Q Consensus 547 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 625 (861)
.+.. ...+.+|-++..+|.-+++.+.|++.|++.++ +.|+ ..+|+.+..-+.....+|.|...|+... ..+
T Consensus 414 i~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~ 485 (638)
T KOG1126|consen 414 IDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVD 485 (638)
T ss_pred HhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCC
Confidence 1111 22345666666666666666666666666666 5553 4455555555555566666666665544 234
Q ss_pred hhHHHHH---HHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 002975 626 MEHYACM---VDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSN 700 (861)
Q Consensus 626 ~~~~~~l---~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 700 (861)
..||+++ .-.|.|+++++.|+-.|+++. ..| +.++...+...+.+.|+.|+|.+.+++++.++|.|+-.-+.-+.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 4455443 335666666666666666652 444 34444445555666666666666666666666666666666666
Q ss_pred HHHHcCChhHHHHHHHHHHh
Q 002975 701 LYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 701 ~y~~~g~~~~a~~~~~~m~~ 720 (861)
++...+++++|...++++++
T Consensus 566 il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHhhcchHHHHHHHHHHHH
Confidence 66666666666666666655
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=1.3e-11 Score=130.67 Aligned_cols=275 Identities=14% Similarity=0.097 Sum_probs=218.3
Q ss_pred CHHHHHHHHHhcCCC--Cee-hHHHHHHHHHhcCChhHHHHHHHHHhhcC--CCCCHHHHHHHHHHhhcccchHHHHHHH
Q 002975 438 RMEDARKAFESLFEK--NLV-SYNTMVDAYAKNLNSEKAFELLHEIEDTG--VGTSAYTFASLLSGASSIGAIGKGEQIH 512 (861)
Q Consensus 438 ~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 512 (861)
+..+|...|..++.. |.. ....+..+|...+++++|.++|+.+.+.. ..-+..+|.+++.-+-+.-.+. .+-
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls---~La 410 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALS---YLA 410 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHH---HHH
Confidence 467888888886442 333 33456678888999999999999988653 1235667888776554322111 112
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCC---CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 002975 513 ARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDR---NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN 589 (861)
Q Consensus 513 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 589 (861)
+.+++.. +..+.+|-++.+.|.-.++.+.|++.|++..+- ...+|+.+..-+.....++.|...|+..+. +.|+
T Consensus 411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 2333333 567899999999999999999999999998864 457888888889999999999999999887 6776
Q ss_pred h-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHH
Q 002975 590 G-ITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR-MEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFL 665 (861)
Q Consensus 590 ~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll 665 (861)
. ..|..+...|.+.++++.|.-.|+... .+.|. .....++...+.+.|+.|+|+++++++- ..| |+..--.-+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 4 588899999999999999999999887 77785 4556777889999999999999999983 333 555555566
Q ss_pred HHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 666 GACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 666 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
..+...+++++|.+.+|++.++-|+++..|.+|+.+|...|+.+.|..-+..+.+-
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 67778899999999999999999999999999999999999999999888877653
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=8.2e-10 Score=112.32 Aligned_cols=213 Identities=17% Similarity=0.155 Sum_probs=167.1
Q ss_pred cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHH
Q 002975 501 SIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEI 577 (861)
Q Consensus 501 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 577 (861)
-.|+.-.+.+-++..++.... +...|--+..+|....+.++-.+.|++..+ .|..+|..-...+.-.+++++|+.=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 356777777778877776532 233366666778888888888888887763 4566777777777778889999999
Q ss_pred HHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCC
Q 002975 578 FYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM-PLS 655 (861)
Q Consensus 578 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~-~~~ 655 (861)
|++.+. +.|+ ...|..+.-+..+.+.++++...|+..++++ +-.++.|+-....+..+++++.|.+.++.. .++
T Consensus 417 F~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999988 6776 4578888778888899999999999988654 445677888889999999999999999875 344
Q ss_pred CC---------HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 002975 656 AD---------VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMK 719 (861)
Q Consensus 656 p~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~ 719 (861)
|+ +.+-.+++-.-. .+|+..|+.+++++++++|....+|..|+.+-..+|+.++|.+++++.-
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 43 334444443333 3899999999999999999999999999999999999999999998653
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.42 E-value=1.4e-10 Score=125.64 Aligned_cols=274 Identities=10% Similarity=0.052 Sum_probs=187.6
Q ss_pred cCCHHHHHHHHHhcCCC--Ce-ehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHH--HHHHHhhcccchHHHHH
Q 002975 436 SGRMEDARKAFESLFEK--NL-VSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFA--SLLSGASSIGAIGKGEQ 510 (861)
Q Consensus 436 ~g~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~ 510 (861)
.|+++.|++.+....+. ++ ..|........+.|++++|.+.|.++.+. .|+..... .....+...|+.+.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57777777666655432 12 22222233346777888888888877643 44443222 23456677788888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCc-----------hHHHHHHHHHHhcCChHHHHHHHH
Q 002975 511 IHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNV-----------ISWTSMITGFAKHGFAARALEIFY 579 (861)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~ 579 (861)
.++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+... .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888877765 55677778888888888888888888887764221 133333433344445556666666
Q ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-C
Q 002975 580 KMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-D 657 (861)
Q Consensus 580 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~ 657 (861)
++-+. .+.+......+..++...|+.++|...++...+ ..|+.... ++......|+.+++++.+++.. ..| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 65432 334566778888889999999999999888773 34444322 2223335588999998888763 344 5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 002975 658 VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMK 719 (861)
Q Consensus 658 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~ 719 (861)
+..+.++...|...|++++|...++++++.+|++ ..|..|+.++.+.|+.++|.+.+++-.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6677888899999999999999999999999975 557789999999999999999888553
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.40 E-value=2.5e-10 Score=123.71 Aligned_cols=246 Identities=15% Similarity=0.113 Sum_probs=110.0
Q ss_pred HhcccCChHHHHHHHHHHHHcCCCCCcchh--hHHHHHHHHcCCHHHHHHHHHhcCCC---CeehHHHHHHHHHhcCChh
Q 002975 397 ACGNLLDSNVAEQVYTHAVKRGRALDDCVG--NSLISMYARSGRMEDARKAFESLFEK---NLVSYNTMVDAYAKNLNSE 471 (861)
Q Consensus 397 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 471 (861)
+..+.|+++.+.+.+..+.+. .|+.... ......+...|+++.|...++++.+. +......+...|.+.|+++
T Consensus 127 aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 127 AAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHH
Confidence 335556666666666655543 2232221 12345666667777777766666332 3345566666777777777
Q ss_pred HHHHHHHHHhhcCCCCCHH-------HHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHH
Q 002975 472 KAFELLHEIEDTGVGTSAY-------TFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAF 544 (861)
Q Consensus 472 ~A~~l~~~m~~~g~~p~~~-------t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 544 (861)
+|.+++..+.+.+..++.. +|..++.......+.+...++++.+-+. .+.++.....+...+...|+.++|.
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 7777777776655432221 1111222212222222222333322111 1234444444444455555555555
Q ss_pred HHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 002975 545 QVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIV 623 (861)
Q Consensus 545 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 623 (861)
+++++..+.....--.++.+....++.+++++..++..+ -.|| ...+..+...|.+.|++++|.+.|+.+. ...
T Consensus 284 ~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al---~~~ 358 (398)
T PRK10747 284 QIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL---KQR 358 (398)
T ss_pred HHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcC
Confidence 444444321111111122222333444444444444444 2233 2234444444444445555555444444 223
Q ss_pred CChhHHHHHHHHhhhcCCHHHHHHHHH
Q 002975 624 QRMEHYACMVDLLGRSGSLTEALEFIR 650 (861)
Q Consensus 624 p~~~~~~~l~~~~~r~g~~~eA~~~~~ 650 (861)
|+...|..+..++.+.|+.++|.++++
T Consensus 359 P~~~~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 359 PDAYDYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444444444444444444444444443
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.9e-08 Score=102.08 Aligned_cols=346 Identities=10% Similarity=0.057 Sum_probs=205.5
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCccc-HHHHHHHHHhcCCChHH
Q 002975 293 CSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMS-WTAIITGYVQSGGRDKE 371 (861)
Q Consensus 293 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~~ 371 (861)
..+.|....|...+..++.. -+..|.+.+....-+.+ .+.+..+....+..+... ---+..+|-.... .++
T Consensus 174 ~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~---~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q-~~e 245 (559)
T KOG1155|consen 174 LKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITD---IEILSILVVGLPSDMHWMKKFFLKKAYQELHQ-HEE 245 (559)
T ss_pred HHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhch---HHHHHHHHhcCcccchHHHHHHHHHHHHHHHH-HHH
Confidence 44566667777666655432 12334444433333333 555555444444332111 1123345555555 778
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCC--CCCcchhhHHHHHHHHcCCHHH-HHHHHHh
Q 002975 372 AVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGR--ALDDCVGNSLISMYARSGRMED-ARKAFES 448 (861)
Q Consensus 372 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~-A~~~~~~ 448 (861)
+++-.......|..-+...-+....+.-...|+++|+.+|+++.+... -.|..+|+.++-.-..+.++.- |..++ .
T Consensus 246 ~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~-~ 324 (559)
T KOG1155|consen 246 ALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-N 324 (559)
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH-H
Confidence 888888887777765555555555566678899999999999988742 2244555555433322222221 22222 2
Q ss_pred cCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHH
Q 002975 449 LFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYN 528 (861)
Q Consensus 449 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 528 (861)
+.+--+.|...+.+-|.-.++.++|...|+...+.+ +-....|+.+..-|....+...|.+-+..+++.+ +.|-..|-
T Consensus 325 idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWY 402 (559)
T KOG1155|consen 325 IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWY 402 (559)
T ss_pred hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHh
Confidence 222234556666677777778888888888877543 2233455566666777777777777777777665 55677777
Q ss_pred HHHHHHHccCCHHHHHHHHHhcc---CCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Q 002975 529 ALISMYSRCANVEAAFQVFKEME---DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGL 605 (861)
Q Consensus 529 ~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 605 (861)
.|..+|.-.+...-|+-.|++.. ..|...|.+|..+|.+.++.++|++.|.+....| ..+...+..|...+.+.++
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d 481 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKD 481 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHh
Confidence 77777777777777777777655 2466777777777777777777777777777655 3355667777777777777
Q ss_pred HHHHHHHHHHHHhhc---CC-CC-ChhHHHHHHHHhhhcCCHHHHHHHHH
Q 002975 606 ISEGWKHFRSMYDEH---GI-VQ-RMEHYACMVDLLGRSGSLTEALEFIR 650 (861)
Q Consensus 606 ~~~a~~~~~~m~~~~---~~-~p-~~~~~~~l~~~~~r~g~~~eA~~~~~ 650 (861)
.++|.++|..-++.. |. .| ......-|..-+.+.+++++|.....
T Consensus 482 ~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 482 LNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 777777776655322 21 22 11222223444556666666655443
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.9e-09 Score=110.62 Aligned_cols=255 Identities=12% Similarity=0.088 Sum_probs=190.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC
Q 002975 459 TMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCA 538 (861)
Q Consensus 459 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 538 (861)
.-.+-+-..+++.+.++++....+.. ++....+..-|..+...|+-.+-..+-..+++. .+....+|-++.-.|.-.|
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhc
Confidence 33444555666666666666665432 333333334444555566555555555555554 3667788888888888889
Q ss_pred CHHHHHHHHHhccCCC---chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHH
Q 002975 539 NVEAAFQVFKEMEDRN---VISWTSMITGFAKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFR 614 (861)
Q Consensus 539 ~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~ 614 (861)
+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. -| ...-+.-+..-|.+.+..+-|.++|.
T Consensus 327 k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 9999999998776433 368999999999999999999999888773 33 23344446667888999999999998
Q ss_pred HHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002975 615 SMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMP--------LSA-DVLVWRTFLGACRVHGDTELGKHAAEMI 684 (861)
Q Consensus 615 ~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--------~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 684 (861)
+.. ++.| |+..++-+.-+....+.+.+|..+|+... ..+ -..+|+.|+.+||+.+.+++|+..++++
T Consensus 405 ~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 405 QAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 876 6666 44556666667777889999999988753 111 2356888999999999999999999999
Q ss_pred hccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 685 LEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 685 ~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+.+.|.++.+|..++-+|...|+.+.|.+.+.+...
T Consensus 482 L~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 482 LLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999999999999987654
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.36 E-value=1.4e-09 Score=118.73 Aligned_cols=59 Identities=14% Similarity=0.112 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHH--HHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 659 LVWRTFLGACRVHGDTELGKHAAE--MILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 659 ~~~~~ll~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
....++.+.|...|++++|...++ .+++.+|++.. +..|+.++.+.|+.++|.+++++.
T Consensus 336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 336 CINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666666777777777777777 45556664433 457777777777777777766654
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.36 E-value=6.2e-10 Score=121.40 Aligned_cols=283 Identities=11% Similarity=-0.010 Sum_probs=208.8
Q ss_pred cccCChHHHHHHHHHHHHcCCCCCcc-hhhHHHHHHHHcCCHHHHHHHHHhcCC--CCe--ehHHHHHHHHHhcCChhHH
Q 002975 399 GNLLDSNVAEQVYTHAVKRGRALDDC-VGNSLISMYARSGRMEDARKAFESLFE--KNL--VSYNTMVDAYAKNLNSEKA 473 (861)
Q Consensus 399 ~~~~~~~~a~~i~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~li~~~~~~g~~~~A 473 (861)
...|+++.|++.+....+.. |+.. .+-....++.+.|+.+.|.+.+.+..+ |+. ...-+....+.+.|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 45799999999998877653 3332 333445777888999999999998733 333 2333457788889999999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHH---H----ccCCHHHHHHH
Q 002975 474 FELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMY---S----RCANVEAAFQV 546 (861)
Q Consensus 474 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y---~----~~g~~~~A~~~ 546 (861)
.+.++.+.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..+.......-..++ . .....+...+.
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999875 3355678888999999999999999999999987543332211111222 2 22233455555
Q ss_pred HHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHH--H-HHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 002975 547 FKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGIT--Y-IAVLSACSHAGLISEGWKHFRSMYDEH 620 (861)
Q Consensus 547 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~-~~ll~a~~~~g~~~~a~~~~~~m~~~~ 620 (861)
++..++ .+...+..+...+...|+.++|.+.+++..+. .||... + ..........++.+.+.+.++...+..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 555553 47788899999999999999999999999994 565442 1 112222344578888999988887555
Q ss_pred CCCCChhHHHHHHHHhhhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 002975 621 GIVQRMEHYACMVDLLGRSGSLTEALEFIRS--M-PLSADVLVWRTFLGACRVHGDTELGKHAAEMILE 686 (861)
Q Consensus 621 ~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~--~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 686 (861)
.-.|+.....++..++.+.|++++|.+.|+. . ...|+...+..|...+.+.|+.+.|.+++++.++
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444435667888999999999999999994 3 4689998888999999999999999999998765
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.34 E-value=1e-11 Score=128.60 Aligned_cols=252 Identities=19% Similarity=0.202 Sum_probs=86.4
Q ss_pred HHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHH-HHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCC
Q 002975 360 TGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVL-KACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGR 438 (861)
Q Consensus 360 ~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~ 438 (861)
..+.+.|+ +++|++++.+-.....+|+...|-.++ ..+...++.+.|.+.++.+...+.. +...+..++.. ...++
T Consensus 16 ~~~~~~~~-~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 16 RLLYQRGD-YEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 34445555 667777665443332234444443333 3444566677777777776665422 44455556555 56777
Q ss_pred HHHHHHHHHhcC--CCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcC-CCCCHHHHHHHHHHhhcccchHHHHHHHHHH
Q 002975 439 MEDARKAFESLF--EKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTG-VGTSAYTFASLLSGASSIGAIGKGEQIHARI 515 (861)
Q Consensus 439 ~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 515 (861)
+++|.++++..- .++...+..++..+.+.++++++.++++++.... .+.+...|..+...+.+.|+.++|...++++
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777766552 2345556667777777777777777777765432 3345556666666677777777777777777
Q ss_pred HHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhcc---CCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChH
Q 002975 516 IKSGFESNHCIYNALISMYSRCANVEAAFQVFKEME---DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKP-NGI 591 (861)
Q Consensus 516 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ 591 (861)
++.. +.|..+.+.++..+...|+.+++.++++... ..|...|..+..+|...|+.++|+.+|++..+. .| |..
T Consensus 173 l~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~ 249 (280)
T PF13429_consen 173 LELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPL 249 (280)
T ss_dssp HHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HH
T ss_pred HHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc--cccccc
Confidence 7664 4456666777777777777777666665544 345666677777777777777777777777663 34 455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002975 592 TYIAVLSACSHAGLISEGWKHFRSMY 617 (861)
Q Consensus 592 t~~~ll~a~~~~g~~~~a~~~~~~m~ 617 (861)
....+..++...|+.++|.++.++..
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 66667777777777777777665543
No 50
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.32 E-value=3.6e-10 Score=113.88 Aligned_cols=198 Identities=11% Similarity=0.068 Sum_probs=165.4
Q ss_pred CchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 002975 522 SNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLS 598 (861)
Q Consensus 522 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 598 (861)
.....+..+...|...|++++|.+.|++..+ .+...+..+...|...|++++|++.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3456778888999999999999999998763 345678888899999999999999999999853 234567778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHH
Q 002975 599 ACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTEL 676 (861)
Q Consensus 599 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~ 676 (861)
.+...|++++|.+.|+..............+..+...+.+.|++++|.+.+++.. ..| +...|..+...+...|+.+.
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999988432223345567778889999999999999998863 333 46688889999999999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 677 GKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 677 a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
|...++++++..|+++..+..++.++...|++++|....+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999998889999999999999999999998887754
No 51
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.30 E-value=6.9e-07 Score=94.43 Aligned_cols=507 Identities=16% Similarity=0.218 Sum_probs=271.2
Q ss_pred CcchHHHHHHHHhcCCChHHHHHHHHhc----CCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHH
Q 002975 112 NSVILNSLISLYSKCGDLNEANKIFKSM----GNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVI 187 (861)
Q Consensus 112 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 187 (861)
-+..|-..+..+.+.|++...+..|+.. |.......|...|.-....|-++-++++|++.++. .|. .-.--|
T Consensus 101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~--~~eeyi 176 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APE--AREEYI 176 (835)
T ss_pred CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHH--HHHHHH
Confidence 4567888888889999999999999865 54455667999999888999999999999998763 333 356677
Q ss_pred HHhcCCcchhhhhhhhhhhhhccC-----CCCchhHHHHHHHHhhhCCCCH---HHHHHHHhcCCCC--C--cchHHHHH
Q 002975 188 RACSNTENVAIGHIIYGFLLKCGY-----FDSDVCVGCALIDMFVKGSVDL---ESAYKVFDKMTEK--N--TVGWTLMI 255 (861)
Q Consensus 188 ~~~~~~~~~~~a~~~~~~~~~~g~-----~~~~~~~~~~l~~~~~~~~g~~---~~A~~~f~~~~~~--~--~~~~~~li 255 (861)
.-++..+++++|.+.+..++.... .+.+...|..+-+..++ .-+. -....+++.+..+ | ...|++|.
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~-~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQ-NPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLA 255 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHh-CcchhcccCHHHHHHhhcccCcHHHHHHHHHHH
Confidence 788889999999988887764321 24556666666666655 2221 1223334444332 2 45699999
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCC
Q 002975 256 TRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDG 335 (861)
Q Consensus 256 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g 335 (861)
.-|.+.|.++.|-++|++-.+. .....-|+.+.++|+.-.....+..+- ...+.+.... +.-
T Consensus 256 dYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e---------------d~~ 317 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE---------------DDV 317 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh---------------hhh
Confidence 9999999999999999887654 223445666666665432211111111 0000111000 001
Q ss_pred CHHHHHHHHhccCCC---------------CcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcc
Q 002975 336 SVDDSRKVFDRMLDH---------------NVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGN 400 (861)
Q Consensus 336 ~~~~A~~~~~~~~~~---------------~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 400 (861)
.++-...-|+.+..+ ++..|..-+..+ .|+ ..+-...|.+..+. +.|-...
T Consensus 318 dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~-~~~~i~tyteAv~~-vdP~ka~---------- 383 (835)
T KOG2047|consen 318 DLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGN-AAEQINTYTEAVKT-VDPKKAV---------- 383 (835)
T ss_pred hHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhh--cCC-hHHHHHHHHHHHHc-cCcccCC----------
Confidence 133333333333221 333343333322 232 34444444444332 2221100
Q ss_pred cCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCee-------hHHHHHHHHHhcCChhHH
Q 002975 401 LLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLV-------SYNTMVDAYAKNLNSEKA 473 (861)
Q Consensus 401 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A 473 (861)
-.-...+..+.+.|-..|+++.|+.+|++..+-+-. +|..-...=.+..+++.|
T Consensus 384 -------------------Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~A 444 (835)
T KOG2047|consen 384 -------------------GSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAA 444 (835)
T ss_pred -------------------CChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHH
Confidence 001123344555555555555555555555333222 222222222344455555
Q ss_pred HHHHHHHhhcCCC----------C-------CHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 002975 474 FELLHEIEDTGVG----------T-------SAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSR 536 (861)
Q Consensus 474 ~~l~~~m~~~g~~----------p-------~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 536 (861)
+++.++.....-. | +...|...++.-...|-++..+.+++.++...+-....+ -...-.+-.
T Consensus 445 l~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii-~NyAmfLEe 523 (835)
T KOG2047|consen 445 LKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQII-INYAMFLEE 523 (835)
T ss_pred HHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Confidence 5555544321100 0 122344444555556677777777777776554322211 112222334
Q ss_pred cCCHHHHHHHHHhccC----CCc-hHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChHHHHHHH--HHHHhcCCH
Q 002975 537 CANVEAAFQVFKEMED----RNV-ISWTSMITGFAK---HGFAARALEIFYKMLADGIKPNGITYIAVL--SACSHAGLI 606 (861)
Q Consensus 537 ~g~~~~A~~~~~~~~~----~~~-~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll--~a~~~~g~~ 606 (861)
..-++++.++|++-.. |++ ..||.-+.-+.+ ....+.|..+|++.++ |.+|...-+.-|+ .-=..-|..
T Consensus 524 h~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLa 602 (835)
T KOG2047|consen 524 HKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLA 602 (835)
T ss_pred hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHH
Confidence 4556777777776552 443 366666555442 1346778888888877 6666543222222 222344666
Q ss_pred HHHHHHHHHHHh--------------------hcCCCCChhHHHH----------------HHHHhhhcCCHHHHHHHHH
Q 002975 607 SEGWKHFRSMYD--------------------EHGIVQRMEHYAC----------------MVDLLGRSGSLTEALEFIR 650 (861)
Q Consensus 607 ~~a~~~~~~m~~--------------------~~~~~p~~~~~~~----------------l~~~~~r~g~~~eA~~~~~ 650 (861)
..|+.++++... -+|+.-+...|.- ..++=.+-|.++.|..++.
T Consensus 603 r~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya 682 (835)
T KOG2047|consen 603 RHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYA 682 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 666666666432 2333333333322 1223345667777776665
Q ss_pred hCC--CCC--CHHHHHHHHHHHHHhCCHHH
Q 002975 651 SMP--LSA--DVLVWRTFLGACRVHGDTEL 676 (861)
Q Consensus 651 ~~~--~~p--~~~~~~~ll~~~~~~g~~~~ 676 (861)
-.. ..| ++..|.+.=.--.+|||-+-
T Consensus 683 ~~sq~~dPr~~~~fW~twk~FEvrHGnedT 712 (835)
T KOG2047|consen 683 HGSQICDPRVTTEFWDTWKEFEVRHGNEDT 712 (835)
T ss_pred hhhhcCCCcCChHHHHHHHHHHHhcCCHHH
Confidence 432 233 45667776666677777443
No 52
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.28 E-value=2.2e-07 Score=94.53 Aligned_cols=477 Identities=12% Similarity=0.108 Sum_probs=304.7
Q ss_pred CCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHHHHHH
Q 002975 230 SVDLESAYKVFDKMTE---KNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLH 306 (861)
Q Consensus 230 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~ 306 (861)
.+++..|+.+|++... ++...|--.+..=.++.....|..+++.....=...|..= --.+..=-..|++..|++++
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlW-yKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLW-YKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHH-HHHHHHHHHhcccHHHHHHH
Confidence 3445555555555443 3444455555555555555555555555443211112111 11111222346667777777
Q ss_pred HHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhcc--CCCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCC
Q 002975 307 SWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRM--LDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQV 384 (861)
Q Consensus 307 ~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~ 384 (861)
..-.+ ..|+...+++.|++=.+... ++.|+.++++. ..|++.+|--...-=-++|. ...|..+|....+.
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRyke---ieraR~IYerfV~~HP~v~~wikyarFE~k~g~-~~~aR~VyerAie~-- 236 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKE---IERARSIYERFVLVHPKVSNWIKYARFEEKHGN-VALARSVYERAIEF-- 236 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhH---HHHHHHHHHHHheecccHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHH--
Confidence 66543 46777777777777777666 77777777775 45677777766666666676 77777777666542
Q ss_pred CCChhhHHHHHHHh----cccCChHHHHHHHHHHHHcCCCCC--cchhhHHHHHHHHcCCHHHHHHH--------HHhcC
Q 002975 385 APNHFTFASVLKAC----GNLLDSNVAEQVYTHAVKRGRALD--DCVGNSLISMYARSGRMEDARKA--------FESLF 450 (861)
Q Consensus 385 ~p~~~t~~~ll~a~----~~~~~~~~a~~i~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~--------~~~~~ 450 (861)
-.|...-..++.++ .+...++.|.-+++..++.- +.+ ...|..+...=-+-|+.....+. ++.+.
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v 315 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV 315 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence 11222222333333 34566778888888877653 222 33444444444445554433332 22333
Q ss_pred CC---CeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHH-------HHHHHHHHh---hcccchHHHHHHHHHHHH
Q 002975 451 EK---NLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAY-------TFASLLSGA---SSIGAIGKGEQIHARIIK 517 (861)
Q Consensus 451 ~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------t~~~ll~a~---~~~~~~~~a~~~~~~~~~ 517 (861)
.. |-.+|--.+..--..|+.+...++|++.... ++|-.. .|.-+=-+| ....+.+.+.++++..++
T Consensus 316 ~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 316 SKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD 394 (677)
T ss_pred HhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 33 3456766777777789999999999998865 455321 222221222 346788999999998888
Q ss_pred hCCCCchhHHHHHHHHHH----ccCCHHHHHHHHHhcc--CCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-Ch
Q 002975 518 SGFESNHCIYNALISMYS----RCANVEAAFQVFKEME--DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKP-NG 590 (861)
Q Consensus 518 ~~~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~ 590 (861)
. ++....++.-+--+|+ ++.++..|.+++.... .|-..++...|..-.+.+.++....+|++.++ ..| |-
T Consensus 395 l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c 471 (677)
T KOG1915|consen 395 L-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENC 471 (677)
T ss_pred h-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhh
Confidence 3 4556677776666665 6789999999998776 46777888888888899999999999999999 456 46
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHH
Q 002975 591 ITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSADVLVWRTFLGACR 669 (861)
Q Consensus 591 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~~~~~~~ll~~~~ 669 (861)
.+|......-...|+.+.|..+|+..+..-.+.-....+.+.||.=...|.++.|..++++.. ..+...+|-++..--.
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~ 551 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEA 551 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhc
Confidence 788888877788999999999999988554444455678888888889999999999999874 4555668888775433
Q ss_pred -----HhC-----------CHHHHHHHHHHHhcc----CCCCC--chHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 670 -----VHG-----------DTELGKHAAEMILEQ----DPQDP--AAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 670 -----~~g-----------~~~~a~~~~~~~~~~----~p~~~--~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
..+ +...|..+|+.+... .|... ......-+.-...|.-.+...|-++|.+
T Consensus 552 s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 552 SASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred cccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 233 566778888877653 33221 2222344455666777777777777743
No 53
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.24 E-value=1e-09 Score=117.92 Aligned_cols=231 Identities=16% Similarity=0.148 Sum_probs=176.2
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHh-----CC-CCchh-HHHHHHHHHHccCCHHHHHHHHHhccC-------CC
Q 002975 489 AYTFASLLSGASSIGAIGKGEQIHARIIKS-----GF-ESNHC-IYNALISMYSRCANVEAAFQVFKEMED-------RN 554 (861)
Q Consensus 489 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~~-------~~ 554 (861)
..|...+...|...|+++.|.++++..++. |. .|.+. ..+.+..+|...+++++|..+|+++.. ++
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346666888899999999999988877654 21 22332 234577899999999999999998762 22
Q ss_pred ----chHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCCC-h-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC--
Q 002975 555 ----VISWTSMITGFAKHGFAARALEIFYKMLAD-----GIKPN-G-ITYIAVLSACSHAGLISEGWKHFRSMYDEHG-- 621 (861)
Q Consensus 555 ----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~-~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-- 621 (861)
..+++.|...|.+.|++++|..++++..+. |..+. . .-++.+...|...+.+++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 357888888999999999998888877652 22222 2 2567788889999999999999998775544
Q ss_pred CCCC----hhHHHHHHHHhhhcCCHHHHHHHHHhCC-------C--CCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhc-
Q 002975 622 IVQR----MEHYACMVDLLGRSGSLTEALEFIRSMP-------L--SAD-VLVWRTFLGACRVHGDTELGKHAAEMILE- 686 (861)
Q Consensus 622 ~~p~----~~~~~~l~~~~~r~g~~~eA~~~~~~~~-------~--~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~- 686 (861)
..++ ..+|+.|..+|...|+++||+++++++. . .+. ...++.|..+|...++.+.|.+.|+....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 3579999999999999999999999872 1 222 45677888999999999999999888765
Q ss_pred ---cCCCC---CchHHHHHHHHHHcCChhHHHHHHHHHH
Q 002975 687 ---QDPQD---PAAHILLSNLYASAGHWEYVANIRKRMK 719 (861)
Q Consensus 687 ---~~p~~---~~~~~~L~~~y~~~g~~~~a~~~~~~m~ 719 (861)
..|++ ..+|..|+-+|...|++++|.++...+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34544 4567799999999999999999887664
No 54
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=1.4e-06 Score=96.20 Aligned_cols=145 Identities=15% Similarity=0.198 Sum_probs=117.7
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 002975 555 VISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVD 634 (861)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 634 (861)
...|..+..+-.+.|...+|++-|-+. -|+..|.-++.++++.|.+++-.+++...+ +..-+|.++ +.|+-
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR-kk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR-KKVREPYID--SELIF 1174 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH-HhhcCccch--HHHHH
Confidence 467999999999999999999887332 246789999999999999999999987666 556667665 56899
Q ss_pred HhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHH
Q 002975 635 LLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANI 714 (861)
Q Consensus 635 ~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~ 714 (861)
+|++.+++.|-++++. -|+..-....++-|...|.++.|+-.+. +.+.|..|+..+...|.+..|...
T Consensus 1175 AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred HHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888873 5677777888999999999999988775 446688888888888888887766
Q ss_pred HHHHHh
Q 002975 715 RKRMKE 720 (861)
Q Consensus 715 ~~~m~~ 720 (861)
-++...
T Consensus 1243 aRKAns 1248 (1666)
T KOG0985|consen 1243 ARKANS 1248 (1666)
T ss_pred hhhccc
Confidence 554443
No 55
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.23 E-value=6.2e-08 Score=102.98 Aligned_cols=209 Identities=16% Similarity=0.137 Sum_probs=111.4
Q ss_pred cCCChHHHHHHHHhcCCCCCce-eHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhhhhhh
Q 002975 125 KCGDLNEANKIFKSMGNKRDIV-SWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIY 203 (861)
Q Consensus 125 ~~g~~~~A~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 203 (861)
..|+++.|...++.....|+.. .|-.+.......|+..-|.++|..+ |++.+++.+|
T Consensus 456 d~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfaai----------------------~dvak~r~lh 513 (1636)
T KOG3616|consen 456 DDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAI----------------------GDVAKARFLH 513 (1636)
T ss_pred ccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHHH----------------------HHHHHHHHHH
Confidence 4688999999998876656665 4777777777777777776666543 3444555544
Q ss_pred hhh-------hhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 002975 204 GFL-------LKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMIL 276 (861)
Q Consensus 204 ~~~-------~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 276 (861)
+.. ++.|.-..+-+-..+++.+..+ .+.+|..+|-+-. .-..-|..|....+|++|+.+-+..
T Consensus 514 d~~eiadeas~~~ggdgt~fykvra~lail~k---kfk~ae~ifleqn-----~te~aigmy~~lhkwde~i~lae~~-- 583 (1636)
T KOG3616|consen 514 DILEIADEASIEIGGDGTDFYKVRAMLAILEK---KFKEAEMIFLEQN-----ATEEAIGMYQELHKWDEAIALAEAK-- 583 (1636)
T ss_pred HHHHHHHHHhHhhCCCCchHHHHHHHHHHHHh---hhhHHHHHHHhcc-----cHHHHHHHHHHHHhHHHHHHHHHhc--
Confidence 433 2333233444555666666655 7888888885421 1123466667777777777765432
Q ss_pred CCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhc--cCCCCccc
Q 002975 277 SGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDR--MLDHNVMS 354 (861)
Q Consensus 277 ~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~--~~~~~~~~ 354 (861)
|.+.-...-.+.++++...|+-+.|-++- .+.--.-+-|..|.+.|. +..|.+.... ....|...
T Consensus 584 -~~p~~eklk~sy~q~l~dt~qd~ka~elk---------~sdgd~laaiqlyika~~---p~~a~~~a~n~~~l~~de~i 650 (1636)
T KOG3616|consen 584 -GHPALEKLKRSYLQALMDTGQDEKAAELK---------ESDGDGLAAIQLYIKAGK---PAKAARAALNDEELLADEEI 650 (1636)
T ss_pred -CChHHHHHHHHHHHHHHhcCchhhhhhhc---------cccCccHHHHHHHHHcCC---chHHHHhhcCHHHhhccHHH
Confidence 22111111223344444444444433321 111122345666777665 5555544321 11223333
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHH
Q 002975 355 WTAIITGYVQSGGRDKEAVKLFSDM 379 (861)
Q Consensus 355 ~~~li~~~~~~g~~~~~A~~l~~~m 379 (861)
...+..++.+... +++|-++|+++
T Consensus 651 l~~ia~alik~el-ydkagdlfeki 674 (1636)
T KOG3616|consen 651 LEHIAAALIKGEL-YDKAGDLFEKI 674 (1636)
T ss_pred HHHHHHHHHhhHH-HHhhhhHHHHh
Confidence 3444444444444 55555566554
No 56
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.22 E-value=1.1e-06 Score=89.54 Aligned_cols=421 Identities=11% Similarity=0.134 Sum_probs=216.2
Q ss_pred CCChHHHHHHHHhc--CCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhhhhhh
Q 002975 126 CGDLNEANKIFKSM--GNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIY 203 (861)
Q Consensus 126 ~g~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 203 (861)
.+++..|+.+|+.. ....+...|-..+..=.++.+...|..++++....=.+.|..=| .-+-.=-..|++..|++++
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHHHH
Confidence 34445555555544 11234444555555555555555555555554432111111111 1111112234555555555
Q ss_pred hhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCC--CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC
Q 002975 204 GFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMT--EKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLP 281 (861)
Q Consensus 204 ~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 281 (861)
..=.+ ..|+...|++.|++=.+ -..++.|+.++++.. .|++.+|---..-=-++|....|..+|+...+. --
T Consensus 165 erW~~---w~P~eqaW~sfI~fElR-ykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~ 238 (677)
T KOG1915|consen 165 ERWME---WEPDEQAWLSFIKFELR-YKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LG 238 (677)
T ss_pred HHHHc---CCCcHHHHHHHHHHHHH-hhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hh
Confidence 55444 56777788888887777 777788888877654 477777777666667777777777777765542 11
Q ss_pred CcccHHHHHHHHh----ccCCchHHHHHHHHHHHhCCCC-ccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCcccHH
Q 002975 282 DRFTLSGVVSACS----ELELFTSGKQLHSWAIRTGLAL-DVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWT 356 (861)
Q Consensus 282 d~~t~~~ll~a~~----~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~ 356 (861)
|...-..++.+++ +....+.++-++..++.+-... ...++..+...=-+.|+...++++.--=.++
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~--------- 309 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF--------- 309 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh---------
Confidence 2222223333333 3345556666666666543221 1233444444434444422233322111111
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcc-hhhHHHHH---
Q 002975 357 AIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDC-VGNSLISM--- 432 (861)
Q Consensus 357 ~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~-~~~~li~~--- 432 (861)
-+++++.. -+-|-.++-..++.-...|+.+...++++.++..-.+.... .+...|-.
T Consensus 310 ------------------qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWin 370 (677)
T KOG1915|consen 310 ------------------QYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWIN 370 (677)
T ss_pred ------------------HHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHH
Confidence 11111111 11233333333444444455555555555554432111110 11111111
Q ss_pred -----HHHcCCHHHHHHHHHhcCC---CCeehHHHH----HHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhh
Q 002975 433 -----YARSGRMEDARKAFESLFE---KNLVSYNTM----VDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGAS 500 (861)
Q Consensus 433 -----~~~~g~~~~A~~~~~~~~~---~~~~~~~~l----i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 500 (861)
=....+++.+.++|+...+ ..-.|+.-+ ..--.++.+...|.+++-... |.-|-..+|...|..-.
T Consensus 371 YalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelEl 448 (677)
T KOG1915|consen 371 YALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELEL 448 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHH
Confidence 1123455555555544322 122232222 222345566667777666655 56677777777777777
Q ss_pred cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhcc-CCC----chHHHHHHHHHHhcCChHHHH
Q 002975 501 SIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEME-DRN----VISWTSMITGFAKHGFAARAL 575 (861)
Q Consensus 501 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~ 575 (861)
+++.++.+..+++..+..+ +.+..+|.-....=...|+.+.|..+|+-.. +|- ...|.+.|.--...|.++.|.
T Consensus 449 qL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR 527 (677)
T KOG1915|consen 449 QLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKAR 527 (677)
T ss_pred HHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHH
Confidence 7777777777777777765 5566667666666667777777777777655 332 245666666666677777777
Q ss_pred HHHHHHHHc
Q 002975 576 EIFYKMLAD 584 (861)
Q Consensus 576 ~~~~~m~~~ 584 (861)
.+|+++++.
T Consensus 528 ~LYerlL~r 536 (677)
T KOG1915|consen 528 ALYERLLDR 536 (677)
T ss_pred HHHHHHHHh
Confidence 777777764
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=5.4e-08 Score=101.43 Aligned_cols=256 Identities=11% Similarity=0.069 Sum_probs=162.7
Q ss_pred HhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHH
Q 002975 363 VQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDA 442 (861)
Q Consensus 363 ~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 442 (861)
...++ +.+.+++++...+. .++....+..=|..+...|+...-..+=..+++. .|....+|-++.-.|.-.|+.++|
T Consensus 255 y~~c~-f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seA 331 (611)
T KOG1173|consen 255 YYGCR-FKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEA 331 (611)
T ss_pred HHcCh-HHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHH
Confidence 33344 77777777776654 2334444444455555666655555554555544 366677888888888888999999
Q ss_pred HHHHHhcCCCCe---ehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhC
Q 002975 443 RKAFESLFEKNL---VSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSG 519 (861)
Q Consensus 443 ~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 519 (861)
++.|.+...-|. ..|-.+...|+-.|..+.|+..+...-+. ++-...-+.-+.--|.+.++.+.|.+++.++....
T Consensus 332 Rry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~ 410 (611)
T KOG1173|consen 332 RRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA 410 (611)
T ss_pred HHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 999988755443 57999999999999999999888776542 11111122233445667778888888888776654
Q ss_pred CCCchhHHHHHHHHHHccCCHHHHHHHHHhccC------C----CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-
Q 002975 520 FESNHCIYNALISMYSRCANVEAAFQVFKEMED------R----NVISWTSMITGFAKHGFAARALEIFYKMLADGIKP- 588 (861)
Q Consensus 520 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 588 (861)
+.|+.+.+-+.-++-..+.+.+|...|+.... + -..+|+.|..+|.+.+.+++|+..|++.+. ..|
T Consensus 411 -P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k 487 (611)
T KOG1173|consen 411 -PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPK 487 (611)
T ss_pred -CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCC
Confidence 66777777777777777777777777776541 0 112355566666666666666666666665 333
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhH
Q 002975 589 NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEH 628 (861)
Q Consensus 589 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 628 (861)
|..|+.++.-.+...|+++.|...|.+.. .+.|+-..
T Consensus 488 ~~~~~asig~iy~llgnld~Aid~fhKaL---~l~p~n~~ 524 (611)
T KOG1173|consen 488 DASTHASIGYIYHLLGNLDKAIDHFHKAL---ALKPDNIF 524 (611)
T ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHH---hcCCccHH
Confidence 34556666666666666666666666544 45555433
No 58
>PF13041 PPR_2: PPR repeat family
Probab=99.21 E-value=1.8e-11 Score=88.28 Aligned_cols=50 Identities=30% Similarity=0.638 Sum_probs=48.5
Q ss_pred CCceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhcC
Q 002975 143 RDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSN 192 (861)
Q Consensus 143 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 192 (861)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999975
No 59
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.19 E-value=2.6e-08 Score=99.68 Aligned_cols=274 Identities=12% Similarity=0.102 Sum_probs=164.3
Q ss_pred cCCHHHHHHHHHhcCCC---CeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHH
Q 002975 436 SGRMEDARKAFESLFEK---NLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIH 512 (861)
Q Consensus 436 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 512 (861)
.|++..|++...+-.+. ....|..-+.+--+.|+.+.+-.++.+.-+..-.++...+.+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 45555555555544322 112233333344455666666666666554432334444444445555566666666666
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCC-----------chHHHHHHHHHHhcCChHHHHHHHHHH
Q 002975 513 ARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRN-----------VISWTSMITGFAKHGFAARALEIFYKM 581 (861)
Q Consensus 513 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m 581 (861)
..+.+.+ +-++.+.......|.+.|++.+...+...+.+.. ..+|+.++.-....+..+.-...+++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 6665554 4455566666666666666666666666665422 135666665555555444444455554
Q ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHH----HHHHHHhCCCCCC
Q 002975 582 LADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTE----ALEFIRSMPLSAD 657 (861)
Q Consensus 582 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~e----A~~~~~~~~~~p~ 657 (861)
-.. .+-++..-.+++.-+...|+.++|.++..... +.+.+|+... ++ ...+-|+... +.+.++..+. +
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L-k~~~D~~L~~---~~-~~l~~~d~~~l~k~~e~~l~~h~~--~ 327 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDAL-KRQWDPRLCR---LI-PRLRPGDPEPLIKAAEKWLKQHPE--D 327 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHH-HhccChhHHH---HH-hhcCCCCchHHHHHHHHHHHhCCC--C
Confidence 332 34445555566666777788888887777766 4455555211 11 1123333332 3333344443 3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 002975 658 VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMK 719 (861)
Q Consensus 658 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~ 719 (861)
+..+.+|+..|.+++.+.+|..+++.+++..| +...|..++.+|.+.|+..+|..+++...
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 47888899999999999999999999999888 55778899999999999999998887654
No 60
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.19 E-value=5.2e-08 Score=94.48 Aligned_cols=261 Identities=12% Similarity=0.123 Sum_probs=157.1
Q ss_pred hHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCC---cchhhHHHHHHHHcCCHHHHHHH
Q 002975 369 DKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALD---DCVGNSLISMYARSGRMEDARKA 445 (861)
Q Consensus 369 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~ 445 (861)
.++|.++|-+|.+.. +-+..+-.++-+.+.+.|..+.|..+|..+.++---+. ....-.|..-|...|-+|.|+.+
T Consensus 51 ~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~ 129 (389)
T COG2956 51 PDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDI 129 (389)
T ss_pred cchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 889999999998731 12333445667778888889999999888876421111 12334456667888888888888
Q ss_pred HHhcCCCCe---ehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHH----HHHHHHHHhhcccchHHHHHHHHHHHHh
Q 002975 446 FESLFEKNL---VSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAY----TFASLLSGASSIGAIGKGEQIHARIIKS 518 (861)
Q Consensus 446 ~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 518 (861)
|..+.+.+. .....|+..|-+..++++|+++-+++.+.+-++..+ .|.-+...+....+++.|...+.+..+.
T Consensus 130 f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa 209 (389)
T COG2956 130 FNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA 209 (389)
T ss_pred HHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Confidence 888866433 345667888888888888888888877766554433 2333444444455666666666666655
Q ss_pred CCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCch----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHH
Q 002975 519 GFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVI----SWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYI 594 (861)
Q Consensus 519 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 594 (861)
+ +..+..--.+.+.+...|+++.|.+.++.+.+.|.. +...|..+|.+.|+.++.+..+.++.+....++ .-.
T Consensus 210 ~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~--~~l 286 (389)
T COG2956 210 D-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD--AEL 286 (389)
T ss_pred C-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc--HHH
Confidence 4 334445555666666666776666666666654432 344556666666666666666666666332222 222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHh
Q 002975 595 AVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLL 636 (861)
Q Consensus 595 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 636 (861)
.+...-....-.+.|..+..+-. .-.|+...+..+++.-
T Consensus 287 ~l~~lie~~~G~~~Aq~~l~~Ql---~r~Pt~~gf~rl~~~~ 325 (389)
T COG2956 287 MLADLIELQEGIDAAQAYLTRQL---RRKPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHhhChHHHHHHHHHHH---hhCCcHHHHHHHHHhh
Confidence 22222222333444444443333 2346666666665543
No 61
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=5.5e-08 Score=99.38 Aligned_cols=210 Identities=15% Similarity=0.144 Sum_probs=111.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHHHHHHH
Q 002975 402 LDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFE---KNLVSYNTMVDAYAKNLNSEKAFELLH 478 (861)
Q Consensus 402 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 478 (861)
|+.-.+.+-++..++.... +...|--+..+|....+-++..+.|+.... .|..+|-.-...+.-.+++++|..-|+
T Consensus 340 g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred CCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443211 111233444445555555555555554422 233344444444444455555555555
Q ss_pred HHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--CC--
Q 002975 479 EIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED--RN-- 554 (861)
Q Consensus 479 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-- 554 (861)
+.+... +-+...|.-+.-+..+.+.++++...|+..++. ++..+.+|+-....+...++++.|.+.|+...+ |+
T Consensus 419 Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~ 496 (606)
T KOG0547|consen 419 KAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREH 496 (606)
T ss_pred HHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccc
Confidence 554321 112334444444445556666666666666554 455666677777777777777777777765542 21
Q ss_pred -----chHH--HHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002975 555 -----VISW--TSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMY 617 (861)
Q Consensus 555 -----~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 617 (861)
...+ -+++ .+.-.+++.+|++++++..+ +.|. ...|.+|...-.+.|++++|+++|+...
T Consensus 497 ~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 497 LIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1111 1111 11133677777777777777 5554 4567777777777777777777777654
No 62
>PF13041 PPR_2: PPR repeat family
Probab=99.18 E-value=5.8e-11 Score=85.55 Aligned_cols=50 Identities=30% Similarity=0.620 Sum_probs=47.7
Q ss_pred CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 002975 553 RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSH 602 (861)
Q Consensus 553 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 602 (861)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=99.18 E-value=6.6e-09 Score=117.83 Aligned_cols=242 Identities=13% Similarity=0.051 Sum_probs=175.4
Q ss_pred hhHHHHHHHHHhhcCCCCCH-HHHHHHHHHhh---------cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCC
Q 002975 470 SEKAFELLHEIEDTGVGTSA-YTFASLLSGAS---------SIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCAN 539 (861)
Q Consensus 470 ~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 539 (861)
.++|+++|++..+. .|+. ..+..+..++. ..++.++|...++++++.. +.+...+..+..++...|+
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 46777777777643 3433 33433333322 2345788899999888876 5577888889899999999
Q ss_pred HHHHHHHHHhccC--C-CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 002975 540 VEAAFQVFKEMED--R-NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGI-TYIAVLSACSHAGLISEGWKHFRS 615 (861)
Q Consensus 540 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 615 (861)
+++|...|++..+ | +...|..+...+...|++++|+..+++.++ ..|+.. .+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999998774 4 356788889999999999999999999999 567643 334445556778999999999988
Q ss_pred HHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC
Q 002975 616 MYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMP-LSADV-LVWRTFLGACRVHGDTELGKHAAEMILEQDPQDP 692 (861)
Q Consensus 616 m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 692 (861)
+.+.. .| +...+..+..+|...|++++|.+.++++. ..|+. ..++.+...+...| +.+...++++++..-..+
T Consensus 432 ~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 76332 24 34456778888999999999999998863 44543 44555555666666 477887888777544444
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 693 AAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 693 ~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
.....+..+|+-.|+-+.+..+ +++.+.
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 4444588899999999988877 656553
No 64
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.16 E-value=6.4e-08 Score=96.98 Aligned_cols=278 Identities=13% Similarity=0.102 Sum_probs=172.5
Q ss_pred CCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHH
Q 002975 366 GGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKA 445 (861)
Q Consensus 366 g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 445 (861)
|+ +..|.++..+-.+.+-.| ...|..-..+..+.|+.+.+-..+.++.+..-.++..++-+........|+.+.|..-
T Consensus 98 G~-~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 98 GD-FQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred Cc-HHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 55 666666666655544332 2344555556667777777777777776664455666666677777778888877777
Q ss_pred HHhc---CCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCH-------HHHHHHHHHhhcccchHHHHHHHHHH
Q 002975 446 FESL---FEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSA-------YTFASLLSGASSIGAIGKGEQIHARI 515 (861)
Q Consensus 446 ~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~a~~~~~~~~~a~~~~~~~ 515 (861)
.++. ...+.........+|.+.|++.+...++..|.+.|.--|. .++..++.-+...+..+.-.+.++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 6655 3345667777888888888888888888888888765554 35666666655555555544455544
Q ss_pred HHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCC--CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHH
Q 002975 516 IKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDR--NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITY 593 (861)
Q Consensus 516 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 593 (861)
-+. ...++.+-.+++.-+.++|+.++|.++..+..++ |.. -...-.+.+-++.+.-++..++-.+. .+-++..+
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~ 331 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLL 331 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChhHH
Confidence 332 2345555666666777777777777776665532 222 11122334555555555555554442 11223556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC
Q 002975 594 IAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM 652 (861)
Q Consensus 594 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~ 652 (861)
.+|...|.+.+.+.+|..+|+... ...|+..+|+-+.+.|.+.|+..+|.+..++.
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl---~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAAL---KLRPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH---hcCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 666666777777777777776554 45566666666666666666666666666553
No 65
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.16 E-value=8.9e-06 Score=87.06 Aligned_cols=196 Identities=16% Similarity=0.165 Sum_probs=109.3
Q ss_pred HHHHHhcCCcchhHHHHHHHHHcCCCCCcchHHHHHHHHhcCCChHHHHHHHHhcCCCCCceeHHHHHHHHHhcCChhHH
Q 002975 85 LKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGDLNEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVDA 164 (861)
Q Consensus 85 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 164 (861)
+.+....+.+..|..+++.+..+.. ....|..+.+.|+..|+++.|.++|-+... ++--|..|.++|+|++|
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~~------~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEADL------FKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcch------hHHHHHHHhccccHHHH
Confidence 3344445556666666555444332 233455566666666667766666655544 55566666666666666
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhhhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCC
Q 002975 165 IHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMT 244 (861)
Q Consensus 165 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~ 244 (861)
.++-.+... |. .....|-+-..-.-+ .|++.+|.+++-.+.
T Consensus 811 ~kla~e~~~----~e----------------------------------~t~~~yiakaedlde-hgkf~eaeqlyiti~ 851 (1636)
T KOG3616|consen 811 FKLAEECHG----PE----------------------------------ATISLYIAKAEDLDE-HGKFAEAEQLYITIG 851 (1636)
T ss_pred HHHHHHhcC----ch----------------------------------hHHHHHHHhHHhHHh-hcchhhhhheeEEcc
Confidence 666554321 11 111222222222223 667777777776666
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHH
Q 002975 245 EKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSL 324 (861)
Q Consensus 245 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l 324 (861)
+|+. -|..|-+.|..++.+++.++-.-... ..|-..+-.-+...|++..|+.-+-... -+.+-
T Consensus 852 ~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l---~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaa 914 (1636)
T KOG3616|consen 852 EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHL---HDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAA 914 (1636)
T ss_pred CchH-----HHHHHHhhCcchHHHHHHHHhChhhh---hHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHH
Confidence 6653 35667777777777777665321111 1233444445556677776665443322 34567
Q ss_pred HHHHHhCCCCCCHHHHHHHHhcc
Q 002975 325 VDMYAKCTVDGSVDDSRKVFDRM 347 (861)
Q Consensus 325 i~~y~~~g~~g~~~~A~~~~~~~ 347 (861)
++||...+. +++|.++-..-
T Consensus 915 vnmyk~s~l---w~dayriakte 934 (1636)
T KOG3616|consen 915 VNMYKASEL---WEDAYRIAKTE 934 (1636)
T ss_pred HHHhhhhhh---HHHHHHHHhcc
Confidence 778887766 88888776554
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=1.7e-09 Score=104.25 Aligned_cols=227 Identities=18% Similarity=0.124 Sum_probs=175.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcc
Q 002975 458 NTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRC 537 (861)
Q Consensus 458 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 537 (861)
+.|..+|.+.|.+.+|.+.|+.-.++ .|-..||..|-.+|.+..+.+.|+.++..-.+. ++.|+....-....+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45677777778888887777776654 455566777777777777777777777766654 355555556667777778
Q ss_pred CCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 002975 538 ANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFR 614 (861)
Q Consensus 538 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 614 (861)
++.++|.++|+...+ .|+.+...+..+|.-.++++-|+.+|+++++.|+ -+...|..+.-+|...+++|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 888888888887764 3455556667788888889999999999988884 356778888888888888888887777
Q ss_pred HHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC
Q 002975 615 SMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSA--DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDP 692 (861)
Q Consensus 615 ~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 692 (861)
+.... | ..| -..+|..|.......||...|.+.++.++.-+|++.
T Consensus 383 RAlst--------------------------------a-t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 383 RALST--------------------------------A-TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred HHHhh--------------------------------c-cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 66521 1 122 246898998888999999999999999999999999
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 693 AAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 693 ~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
.+++.|+-+-.+.|+.++|..++...+..
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 99999999999999999999999877763
No 67
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.14 E-value=8.9e-08 Score=92.91 Aligned_cols=306 Identities=13% Similarity=0.149 Sum_probs=198.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC-CCee------hHHHHHHHHHhcCChhHH
Q 002975 401 LLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFE-KNLV------SYNTMVDAYAKNLNSEKA 473 (861)
Q Consensus 401 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~------~~~~li~~~~~~g~~~~A 473 (861)
..+.++|.+.|-+|.+.. +.+..+.-+|.+.|-+.|.+|.|+++-+.+.+ ||.. ..-.|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 357888999999998743 44555667889999999999999999988754 4432 334456678889999999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHccCCHHHHHHHHHh
Q 002975 474 FELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESN----HCIYNALISMYSRCANVEAAFQVFKE 549 (861)
Q Consensus 474 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~ 549 (861)
..+|..+.+.+ .--......|+..|-...++++|.++-..+.+.+-++. ...|.-|...+.-..+++.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999988754 23345667788888888899999988888877653332 22344566666667788888888887
Q ss_pred ccCCCc---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCh
Q 002975 550 MEDRNV---ISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRM 626 (861)
Q Consensus 550 ~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 626 (861)
..+.|. ..--.+...+...|+++.|++.++...+++..--+.+...|..+|.+.|+.+++...+..+.+. .+..
T Consensus 206 Alqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~ 282 (389)
T COG2956 206 ALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGA 282 (389)
T ss_pred HHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCc
Confidence 764332 2333345667788888888888888888542222456677778888888888888888777632 2333
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc
Q 002975 627 EHYACMVDLLGRSGSLTEALEFI-RSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASA 705 (861)
Q Consensus 627 ~~~~~l~~~~~r~g~~~eA~~~~-~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~ 705 (861)
..-..+.+.-....-.++|...+ +....+|+......|+..-.. =++.
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~-------------------------------daee 331 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLA-------------------------------DAEE 331 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhc-------------------------------cccc
Confidence 33333333333333333443333 333445554444333332111 1234
Q ss_pred CChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEE
Q 002975 706 GHWEYVANIRKRMKERNLIKEAGCSWIEADNKVHKFH 742 (861)
Q Consensus 706 g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~ 742 (861)
|+|.+..-+.+.|....++..|.+.-..-+=+.|.|.
T Consensus 332 g~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~ 368 (389)
T COG2956 332 GRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLY 368 (389)
T ss_pred cchhhhHHHHHHHHHHHHhhcCCceecccCCcceeee
Confidence 6677888888888877777777554433333344443
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.13 E-value=8.2e-09 Score=106.97 Aligned_cols=211 Identities=15% Similarity=0.037 Sum_probs=149.2
Q ss_pred cchHHHHHHHHHHHHhC-CCC--chhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHH
Q 002975 503 GAIGKGEQIHARIIKSG-FES--NHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALE 576 (861)
Q Consensus 503 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 576 (861)
+..+.+..-+.+++... ..| ....|..+...|.+.|+.++|...|++..+ .+...|+.+...|...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34555666666666432 222 245677888889999999999999998763 356789999999999999999999
Q ss_pred HHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--
Q 002975 577 IFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-- 653 (861)
Q Consensus 577 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-- 653 (861)
.|++.++ +.|+ ..++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++..
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999998 6776 56788888889999999999999998873 34543322222234456788999999996642
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHh-------ccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 002975 654 LSADVLVWRTFLGACRVHGDTELGKHAAEMIL-------EQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERN 722 (861)
Q Consensus 654 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~ 722 (861)
..|+ .|.. .......|+...+ ..++.+. ++.|+.+.+|..|+.+|...|++++|...+++..+.+
T Consensus 195 ~~~~--~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKE--QWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCcc--ccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2333 3331 2222334544333 2333333 5567777899999999999999999999999887644
No 69
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=1.4e-06 Score=91.63 Aligned_cols=431 Identities=13% Similarity=0.112 Sum_probs=236.0
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHH--HHHHHHhCCC
Q 002975 256 TRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCS--LVDMYAKCTV 333 (861)
Q Consensus 256 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~--li~~y~~~g~ 333 (861)
.-+.++|++++|+....++...+ +-|...+..-+-+..+.+.++.|..+.. ..+.. .+++. +=.+||....
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~~---~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGAL---LVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcchh---hhcchhhHHHHHHHHHc
Confidence 33445556666666666655543 2223334444444555555555542221 11110 11111 3455554432
Q ss_pred CCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCC-ChhhHHHHHHHhcccCChHHHHHHHH
Q 002975 334 DGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAP-NHFTFASVLKACGNLLDSNVAEQVYT 412 (861)
Q Consensus 334 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~ 412 (861)
++.|+|...++.....+......-...+.+.|+ +++|+++|+.+.+.+..- |...-..++.+-... .. .
T Consensus 93 -nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~-ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------~~-~ 162 (652)
T KOG2376|consen 93 -NKLDEALKTLKGLDRLDDKLLELRAQVLYRLER-YDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------QV-Q 162 (652)
T ss_pred -ccHHHHHHHHhcccccchHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------hH-H
Confidence 448888888775544454455555566777787 888888888886655432 222222222221111 00 0
Q ss_pred HHHHcCCCCCcchhhH---HHHHHHHcCCHHHHHHHHHhc--------CCCCe----------ehHHHHHHHHHhcCChh
Q 002975 413 HAVKRGRALDDCVGNS---LISMYARSGRMEDARKAFESL--------FEKNL----------VSYNTMVDAYAKNLNSE 471 (861)
Q Consensus 413 ~~~~~g~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~~--------~~~~~----------~~~~~li~~~~~~g~~~ 471 (861)
.+......| ..+|.. ....+...|++.+|+++++.. .+.|. ..--.|...+...|+.+
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 111111122 222222 344556678888888888766 11111 11233455677889999
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHH---HhhcccchHH--------------HHHHHHHHHHhCCCCchhHHHHHHHHH
Q 002975 472 KAFELLHEIEDTGVGTSAYTFASLLS---GASSIGAIGK--------------GEQIHARIIKSGFESNHCIYNALISMY 534 (861)
Q Consensus 472 ~A~~l~~~m~~~g~~p~~~t~~~ll~---a~~~~~~~~~--------------a~~~~~~~~~~~~~~~~~~~~~li~~y 534 (861)
+|.+++...+... .+|........+ +.....++-. +......+.+.. .....--+.++.+|
T Consensus 242 ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q-k~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 242 EASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ-KQAIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 9999999988765 445433222221 2221111111 111111111110 11222234555665
Q ss_pred HccCCHHHHHHHHHhccCCC-chHHHHHH-HHHH-hcCChHHHHHHHHHHHHcCCCCCh--HHHHHHHHHHHhcCCHHHH
Q 002975 535 SRCANVEAAFQVFKEMEDRN-VISWTSMI-TGFA-KHGFAARALEIFYKMLADGIKPNG--ITYIAVLSACSHAGLISEG 609 (861)
Q Consensus 535 ~~~g~~~~A~~~~~~~~~~~-~~~~~~li-~~~~-~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a 609 (861)
. +..+.+.++.......- ...+.+++ .++. +...+.+|.+++...-+. .|+. +.....+......|+++.|
T Consensus 320 t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 320 T--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred h--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHH
Confidence 4 55667777777666422 23334444 3332 333578888888887763 4543 3445566667889999999
Q ss_pred HHHHH--------HHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHHhC
Q 002975 610 WKHFR--------SMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM--------PLSAD-VLVWRTFLGACRVHG 672 (861)
Q Consensus 610 ~~~~~--------~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~--------~~~p~-~~~~~~ll~~~~~~g 672 (861)
.+++. .+. +.+..| .+-..++.++.+.++.+-|.+++.+. +.++. ..+|.-+...=.++|
T Consensus 396 ~~il~~~~~~~~ss~~-~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 396 LEILSLFLESWKSSIL-EAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHhhhhhhhhh-hhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 99998 444 334444 44567888898888765555555443 22222 234444555556779
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHH
Q 002975 673 DTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANI 714 (861)
Q Consensus 673 ~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~ 714 (861)
+.++|...++++++.+|+|....+.|...|+... .+.|..+
T Consensus 473 ~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 473 NEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred chHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHH
Confidence 9999999999999999999999999999888764 3444444
No 70
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.09 E-value=1.6e-05 Score=84.47 Aligned_cols=532 Identities=12% Similarity=0.106 Sum_probs=308.5
Q ss_pred hhHHHHHHHHHhcCCcchhHHHHHHHHHcCC-CCCcchHHHHHHHHhcCCChHHHHHHHHhcCCCCCceeHHHHHHHHHh
Q 002975 79 DTYSLLLKSCIRSRNFHLGKLVHSLLTRSKL-EPNSVILNSLISLYSKCGDLNEANKIFKSMGNKRDIVSWSSMISSYVN 157 (861)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~ 157 (861)
..+...+..+..++++..-+..|+..++.-+ .-...+|...+......|-.+-+.++++..-. -+...-+-.|.-++.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk-~~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK-VAPEAREEYIEYLAK 181 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh-cCHHHHHHHHHHHHh
Confidence 3455555666677777777788887776543 33456778888888888888889999887633 334447778888899
Q ss_pred cCChhHHHHHHHHHHHcC------CCCCcccHHHHHHHhcCCcchhhh---hhhhhhhhhccCCCCchhHHHHHHHHhhh
Q 002975 158 RGKQVDAIHMFVEMLELG------FCPNEYCFSAVIRACSNTENVAIG---HIIYGFLLKCGYFDSDVCVGCALIDMFVK 228 (861)
Q Consensus 158 ~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a---~~~~~~~~~~g~~~~~~~~~~~l~~~~~~ 228 (861)
.+++++|-+.+....... -+.+...|..+-...++..+.-.. ..+.+..+..- .+.-.+.|++|.+.|.+
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf-tDq~g~Lw~SLAdYYIr 260 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF-TDQLGFLWCSLADYYIR 260 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC-cHHHHHHHHHHHHHHHH
Confidence 999999988888875322 233445566665655555443332 23333333322 23345789999999999
Q ss_pred CCCCHHHHHHHHhcCCCC--CcchHHHHHHHHHhcCC----------------------chHHHHHHHHHHHCCC-C---
Q 002975 229 GSVDLESAYKVFDKMTEK--NTVGWTLMITRCTQLGC----------------------PRDAIRLFLDMILSGF-L--- 280 (861)
Q Consensus 229 ~~g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~----------------------~~~A~~l~~~m~~~g~-~--- 280 (861)
.|.++.|..+|++.... .+.-|+.+-+.|++-.. ++-.+.-|+.+...+. -
T Consensus 261 -~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNs 339 (835)
T KOG2047|consen 261 -SGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNS 339 (835)
T ss_pred -hhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHH
Confidence 99999999999886542 33344444454443211 1122222333322210 0
Q ss_pred ------C-CcccHHHHHHHHhccCCchHHHHHHHHHHHhC-----CCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccC
Q 002975 281 ------P-DRFTLSGVVSACSELELFTSGKQLHSWAIRTG-----LALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRML 348 (861)
Q Consensus 281 ------p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-----~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~ 348 (861)
| +..++..-+ -...|+..+-...+..+++.- ...-...+..+.+.|-..|+ ++.|+.+|++..
T Consensus 340 VlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~---l~~aRvifeka~ 414 (835)
T KOG2047|consen 340 VLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGD---LDDARVIFEKAT 414 (835)
T ss_pred HHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCc---HHHHHHHHHHhh
Confidence 0 000111111 111233444445555555431 11122356677778888777 888888888776
Q ss_pred CCCcc-------cHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCC
Q 002975 349 DHNVM-------SWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRAL 421 (861)
Q Consensus 349 ~~~~~-------~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 421 (861)
.-+-. .|-.-...=.+..+ ++.|+.+++.... .|.... + .+...+..-++ .+| .
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~-~~~Al~lm~~A~~---vP~~~~----~-~~yd~~~pvQ~-rlh---------r 475 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHEN-FEAALKLMRRATH---VPTNPE----L-EYYDNSEPVQA-RLH---------R 475 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhh-HHHHHHHHHhhhc---CCCchh----h-hhhcCCCcHHH-HHH---------H
Confidence 54333 23333333334444 6666666555432 233211 1 11122221111 111 1
Q ss_pred CcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHH---HHHhcCChhHHHHHHHHHhhcCCCCCHH-HHHHHHH
Q 002975 422 DDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVD---AYAKNLNSEKAFELLHEIEDTGVGTSAY-TFASLLS 497 (861)
Q Consensus 422 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~ 497 (861)
+..+|...++.--..|-++....+++++.+--+.|=...++ -+-.+..++++.+++++-...=.-|+.. .|+..+.
T Consensus 476 SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLt 555 (835)
T KOG2047|consen 476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLT 555 (835)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHH
Confidence 23456666777777888888888888886544433222222 2334566788888887755443345543 3444333
Q ss_pred Hh---hcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----ccCCHHHHHHHHHhccCC-----CchHHHHHHHHH
Q 002975 498 GA---SSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYS----RCANVEAAFQVFKEMEDR-----NVISWTSMITGF 565 (861)
Q Consensus 498 a~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~ 565 (861)
-+ ...-.++.|+.+|++.++ |.+|.. ...+.-.|+ +-|-...|++++++.... -...||..|.--
T Consensus 556 kfi~rygg~klEraRdLFEqaL~-~Cpp~~--aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~ka 632 (835)
T KOG2047|consen 556 KFIKRYGGTKLERARDLFEQALD-GCPPEH--AKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKA 632 (835)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHh-cCCHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 33 234478999999999998 666542 222333344 457888899999987632 235788888655
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHHH---HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCH
Q 002975 566 AKHGFAARALEIFYKMLADGIKPNGITY---IAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSL 642 (861)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~ 642 (861)
+..=-......+|++.++ .-||...- .-....=++.|.++.|..++..-.+-..-.-+.+.|.+.=+.=.|-|+-
T Consensus 633 ae~yGv~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGne 710 (835)
T KOG2047|consen 633 AEIYGVPRTREIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNE 710 (835)
T ss_pred HHHhCCcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCH
Confidence 544335666788888888 46775432 2233445788999999999977653333333556677666666777773
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=6.2e-07 Score=89.84 Aligned_cols=304 Identities=11% Similarity=0.027 Sum_probs=206.5
Q ss_pred CCCChhhHHHHHHHhcc--cCChHHHHHHHHHHHH-cCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHH
Q 002975 384 VAPNHFTFASVLKACGN--LLDSNVAEQVYTHAVK-RGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTM 460 (861)
Q Consensus 384 ~~p~~~t~~~ll~a~~~--~~~~~~a~~i~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 460 (861)
+.|+..+....+.+++. .++-..+.+.+-.+.+ .-++.++....++.+.|...|+.++|...|++...-|+.+...|
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 44555555555555543 3444455555554433 44677888889999999999999999999998765555443333
Q ss_pred ---HHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcc
Q 002975 461 ---VDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRC 537 (861)
Q Consensus 461 ---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 537 (861)
.-.+.+.|+++....+...+.... +-....|..-+.......+.+.|..+-++.++.+ +.+...+-.-...+...
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhc
Confidence 334567788888888777776432 1122222222333345667778888877777654 33444444445667778
Q ss_pred CCHHHHHHHHHhcc--C-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHH-HHHH-hcCCHHHHHHH
Q 002975 538 ANVEAAFQVFKEME--D-RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVL-SACS-HAGLISEGWKH 612 (861)
Q Consensus 538 g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~ 612 (861)
|+.++|.-.|+... . -+..+|..|+..|.-.|++.+|..+-++..+. +.-+..+...+. ..|. ....-++|.++
T Consensus 348 ~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred cchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 89999988888655 3 36789999999999999999998887776662 223344544332 2232 22345778888
Q ss_pred HHHHHhhcCCCCC-hhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Q 002975 613 FRSMYDEHGIVQR-MEHYACMVDLLGRSGSLTEALEFIRSM-PLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ 690 (861)
Q Consensus 613 ~~~m~~~~~~~p~-~~~~~~l~~~~~r~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 690 (861)
+++-. .+.|+ ...-..+..++.+.|+.++++.++++. ...||....+.|....+..+.+.+|...|..++.++|+
T Consensus 427 ~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 427 AEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 87655 55664 244556677888999999999999886 36788888889999999999999999999999999998
Q ss_pred CCc
Q 002975 691 DPA 693 (861)
Q Consensus 691 ~~~ 693 (861)
|-.
T Consensus 504 ~~~ 506 (564)
T KOG1174|consen 504 SKR 506 (564)
T ss_pred chH
Confidence 733
No 72
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.07 E-value=7.2e-07 Score=96.64 Aligned_cols=397 Identities=16% Similarity=0.142 Sum_probs=256.5
Q ss_pred hCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCC---CcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCCh
Q 002975 312 TGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDH---NVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNH 388 (861)
Q Consensus 312 ~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~ 388 (861)
..+..|..+|..|.-+...+|+ ++.+.+.|++...- ....|+.+-..|...|. ...|+.++++-......|+.
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~---f~~lae~fE~~~~~~~~~~e~w~~~als~saag~-~s~Av~ll~~~~~~~~~ps~ 392 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQ---FEVLAEQFEQALPFSFGEHERWYQLALSYSAAGS-DSKAVNLLRESLKKSEQPSD 392 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhcc-chHHHHHHHhhcccccCCCc
Confidence 3466889999999999999999 99999999987543 45679999999999998 88999999887654433544
Q ss_pred hh-HHHHHHHhc-ccCChHHHHHHHHHHHHc--CC--CCCcchhhHHHHHHHHcC-----------CHHHHHHHHHhcCC
Q 002975 389 FT-FASVLKACG-NLLDSNVAEQVYTHAVKR--GR--ALDDCVGNSLISMYARSG-----------RMEDARKAFESLFE 451 (861)
Q Consensus 389 ~t-~~~ll~a~~-~~~~~~~a~~i~~~~~~~--g~--~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~~~~ 451 (861)
.+ +...-..|. +.+..+++...-..+++. +. ......|-.+.-+|...- ...++.+.+++..+
T Consensus 393 ~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 393 ISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred chHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 43 434444453 557777777776666652 21 122334444444444321 23455666666643
Q ss_pred CCeehHHH---HHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHh-CCCCchhHH
Q 002975 452 KNLVSYNT---MVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKS-GFESNHCIY 527 (861)
Q Consensus 452 ~~~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ 527 (861)
.|..-++. +.--|+..++.+.|++..++..+.+-.-+...|..+.-.++..+++..|+.+.+..... |. |....
T Consensus 473 ~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~ 550 (799)
T KOG4162|consen 473 FDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLM 550 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhc
Confidence 32222222 22345667788999999999888776778888888888888888899998888776542 21 11111
Q ss_pred HHHHHHHHccCCHHHHHHHHHhccC-------------------------------CCc-hHHHHHHHHHHhcCChHHHH
Q 002975 528 NALISMYSRCANVEAAFQVFKEMED-------------------------------RNV-ISWTSMITGFAKHGFAARAL 575 (861)
Q Consensus 528 ~~li~~y~~~g~~~~A~~~~~~~~~-------------------------------~~~-~~~~~li~~~~~~g~~~~A~ 575 (861)
..-++.-..-++.++|......+.. .|. .++.-+.. ... -+...+.
T Consensus 551 ~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~-l~a-~~~~~~~ 628 (799)
T KOG4162|consen 551 DGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS-LVA-SQLKSAG 628 (799)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH-HHH-hhhhhcc
Confidence 1111112223444444433322210 111 11211111 111 0001000
Q ss_pred HHHHHHHHcCCCC--C------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHH
Q 002975 576 EIFYKMLADGIKP--N------GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEAL 646 (861)
Q Consensus 576 ~~~~~m~~~g~~p--~------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~ 646 (861)
.-. .|...-+.| + ...|......+...+..++|...+.+.. ++.| ....|.-....+...|..+||.
T Consensus 629 se~-~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~ 704 (799)
T KOG4162|consen 629 SEL-KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAK 704 (799)
T ss_pred ccc-ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHH
Confidence 000 011111223 2 1234556667888899999987777665 4445 3455666678889999999999
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHHhCCHHHHHH--HHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 647 EFIRSM-PLSAD-VLVWRTFLGACRVHGDTELGKH--AAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 647 ~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+.|... ...|+ +.+..++...+-..|+...|+. +...+++++|.++.+|+.|+.++.+.|+.++|.+-+...-+
T Consensus 705 ~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 705 EAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 998876 36664 6688899999999999999988 99999999999999999999999999999999999886654
No 73
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.05 E-value=5.1e-08 Score=98.06 Aligned_cols=198 Identities=15% Similarity=0.114 Sum_probs=96.2
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 002975 455 VSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMY 534 (861)
Q Consensus 455 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 534 (861)
..+..+...|...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+....+.. +.+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~---------- 99 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNG---------- 99 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCH----------
Confidence 345556666666666666666666665432 1223344444444444455555544444444432 2223
Q ss_pred HccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHH
Q 002975 535 SRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHF 613 (861)
Q Consensus 535 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 613 (861)
..+..+...+...|++++|+..|++..+....|. ...+..+..++...|++++|...+
T Consensus 100 ---------------------~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 100 ---------------------DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred ---------------------HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3444444445555555555555555544221121 223444444555555555555555
Q ss_pred HHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Q 002975 614 RSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQ 687 (861)
Q Consensus 614 ~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 687 (861)
+...+.. +.+...+..+...+...|++++|.+.+++.. .+.+...+..+...+...|+.+.|....+.+.+.
T Consensus 159 ~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 159 TRALQID--PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHhC--cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 5544211 1123344445555555555555555555431 1223444445555556666666666665555444
No 74
>PRK12370 invasion protein regulator; Provisional
Probab=99.05 E-value=2.5e-08 Score=113.09 Aligned_cols=210 Identities=12% Similarity=0.024 Sum_probs=163.9
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH---------ccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCC
Q 002975 503 GAIGKGEQIHARIIKSGFESNHCIYNALISMYS---------RCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGF 570 (861)
Q Consensus 503 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~---------~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 570 (861)
+++++|.+.+++.++.. +.+...+..+..+|. ..+++++|...+++..+ .+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45678999999988764 334556666665554 23458999999998874 356788888889999999
Q ss_pred hHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChh-HHHHHHHHhhhcCCHHHHHHH
Q 002975 571 AARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRME-HYACMVDLLGRSGSLTEALEF 648 (861)
Q Consensus 571 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~~~r~g~~~eA~~~ 648 (861)
+++|+..|++.++ ..|+ ...+..+..++...|++++|...+++.. .+.|+.. .+..+...+...|++++|++.
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al---~l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECL---KLDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999999 5676 5578888899999999999999999988 3445432 223344456778999999999
Q ss_pred HHhCC--CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 649 IRSMP--LSAD-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 649 ~~~~~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+++.. ..|+ +..+..+..++...|+.++|+..++++....|++......|+..|...| ++|...++.+.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 98863 2353 4556777778889999999999999999999998888889999999888 477776666544
No 75
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=2.6e-05 Score=86.74 Aligned_cols=351 Identities=12% Similarity=0.080 Sum_probs=199.3
Q ss_pred HHHHhcCCcchhhhhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCch
Q 002975 186 VIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEKNTVGWTLMITRCTQLGCPR 265 (861)
Q Consensus 186 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 265 (861)
+..-+-+..++..-..+++..+..| ..|+.++|+|...|..+.+..+.- +.+ |..--+..+.-||...++.
T Consensus 844 Lv~EvEkRNRLklLlp~LE~~i~eG--~~d~a~hnAlaKIyIDSNNnPE~f---Lke----N~yYDs~vVGkYCEKRDP~ 914 (1666)
T KOG0985|consen 844 LVEEVEKRNRLKLLLPWLESLIQEG--SQDPATHNALAKIYIDSNNNPERF---LKE----NPYYDSKVVGKYCEKRDPH 914 (1666)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcc--CcchHHHhhhhheeecCCCChHHh---ccc----CCcchhhHHhhhhcccCCc
Confidence 3334445556666667777888888 778899999999998844444321 111 2222223344455444443
Q ss_pred HHHHHHHHHHHC----CCCCCcccHHHHHHHHhccCC-----------chHHHHHHHHHHHhCCC--CccchHHHHHHHH
Q 002975 266 DAIRLFLDMILS----GFLPDRFTLSGVVSACSELEL-----------FTSGKQLHSWAIRTGLA--LDVCVGCSLVDMY 328 (861)
Q Consensus 266 ~A~~l~~~m~~~----g~~pd~~t~~~ll~a~~~~~~-----------~~~a~~i~~~~~~~g~~--~~~~~~~~li~~y 328 (861)
-|.-.|++=.-. .+.-....|...-+-+....+ -..-+++.++++..+++ .|+.-.+.-+.++
T Consensus 915 lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAf 994 (1666)
T KOG0985|consen 915 LACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAF 994 (1666)
T ss_pred eEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHH
Confidence 332222110000 000011112122121222222 12245667777777653 4555666677777
Q ss_pred HhCCCCCCHHHHHHHHhccC-CCCcc-----cHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccC
Q 002975 329 AKCTVDGSVDDSRKVFDRML-DHNVM-----SWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLL 402 (861)
Q Consensus 329 ~~~g~~g~~~~A~~~~~~~~-~~~~~-----~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 402 (861)
...+. ..+-.++++++. ++++. .-|.||-.-.+.. .....+..+++-.-. --.+...+...+
T Consensus 995 MtadL---p~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad--~trVm~YI~rLdnyD-------a~~ia~iai~~~ 1062 (1666)
T KOG0985|consen 995 MTADL---PNELIELLEKIVLDNSVFSENRNLQNLLILTAIKAD--RTRVMEYINRLDNYD-------APDIAEIAIENQ 1062 (1666)
T ss_pred HhcCC---cHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcC--hHHHHHHHHHhccCC-------chhHHHHHhhhh
Confidence 77666 788888888773 33333 3344554444443 455666666653321 112334455566
Q ss_pred ChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhh
Q 002975 403 DSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIED 482 (861)
Q Consensus 403 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 482 (861)
-+++|..+|+..- .+....+.|+ -.-+.++.|.++-++..+| ..|+.+..+-.+.|...+|++-|-+.
T Consensus 1063 LyEEAF~ifkkf~-----~n~~A~~VLi---e~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika-- 1130 (1666)
T KOG0985|consen 1063 LYEEAFAIFKKFD-----MNVSAIQVLI---ENIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA-- 1130 (1666)
T ss_pred HHHHHHHHHHHhc-----ccHHHHHHHH---HHhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc--
Confidence 6777777776542 2222223333 2356777887777776554 46888888888888888888766442
Q ss_pred cCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHH
Q 002975 483 TGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMI 562 (861)
Q Consensus 483 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li 562 (861)
-|+..|.-++..+.+.|.+++-..++..+.+..-.|. +-+.||-+|++.+++.+-++... .||+.-...+.
T Consensus 1131 ----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vG 1201 (1666)
T KOG0985|consen 1131 ----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFIA---GPNVANIQQVG 1201 (1666)
T ss_pred ----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHhc---CCCchhHHHHh
Confidence 3667788888888888888888888887777654444 44578888888888877665543 34444444444
Q ss_pred HHHHhcCChHHHHHHH
Q 002975 563 TGFAKHGFAARALEIF 578 (861)
Q Consensus 563 ~~~~~~g~~~~A~~~~ 578 (861)
.-|...|.++.|.-+|
T Consensus 1202 drcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1202 DRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred HHHhhhhhhHHHHHHH
Confidence 4444444444444333
No 76
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=7.2e-07 Score=87.45 Aligned_cols=147 Identities=14% Similarity=0.079 Sum_probs=105.4
Q ss_pred HHHHHHHHHhccC-----CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 002975 540 VEAAFQVFKEMED-----RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFR 614 (861)
Q Consensus 540 ~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 614 (861)
+.-|.+.|+..-+ ..+.--.+|.+.+.-..++++.+.+++....--..-|...| .+..|.+..|.+.+|.++|-
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHh
Confidence 4455555554432 22334556677777777888888888888775333344444 48899999999999999997
Q ss_pred HHHhhcCCC-CChhHHHHH-HHHhhhcCCHHHHHHHHHhCCCCCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHhccCCC
Q 002975 615 SMYDEHGIV-QRMEHYACM-VDLLGRSGSLTEALEFIRSMPLSADVLVWRT-FLGACRVHGDTELGKHAAEMILEQDPQ 690 (861)
Q Consensus 615 ~m~~~~~~~-p~~~~~~~l-~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~ 690 (861)
.+. |.+ .+..+|..+ ...|.++|+.+-|++++-++..+.+..+.-. +.+.|.+.+.+--|-+++..+-.++|.
T Consensus 418 ~is---~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 418 RIS---GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred hhc---ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 765 333 344556554 5688999999999999998865555554444 456799999999999999999999984
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.02 E-value=6.9e-08 Score=104.09 Aligned_cols=234 Identities=15% Similarity=0.153 Sum_probs=139.6
Q ss_pred hhhHHHHHHHHcCCHHHHHHHHHhcCCC----------Cee-hHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHH
Q 002975 425 VGNSLISMYARSGRMEDARKAFESLFEK----------NLV-SYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFA 493 (861)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 493 (861)
+...|..+|...|+++.|..+|+...+. .+. ..+.+...|...+++++|..+|+++...
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i---------- 270 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI---------- 270 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH----------
Confidence 4444666666666666666666554221 111 1223445566666666666666665421
Q ss_pred HHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC----------CCc-hHHHHHH
Q 002975 494 SLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED----------RNV-ISWTSMI 562 (861)
Q Consensus 494 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----------~~~-~~~~~li 562 (861)
.....-...+.-..+++.|..+|.+.|++++|...++...+ +.+ .-++.++
T Consensus 271 ------------------~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~ 332 (508)
T KOG1840|consen 271 ------------------REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELA 332 (508)
T ss_pred ------------------HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 00000001111233445555566666666666665554431 222 2345566
Q ss_pred HHHHhcCChHHHHHHHHHHHHc---CCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc----C-CCC-ChhHH
Q 002975 563 TGFAKHGFAARALEIFYKMLAD---GIKPN----GITYIAVLSACSHAGLISEGWKHFRSMYDEH----G-IVQ-RMEHY 629 (861)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~-~~p-~~~~~ 629 (861)
..+...+++++|..++++..+. -..++ ..++..+...+.+.|++++|.++|+++.... + ..+ .-.++
T Consensus 333 ~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l 412 (508)
T KOG1840|consen 333 AILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPL 412 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHH
Confidence 6677777788887777766542 12223 2367788888888888888888888776432 1 122 23456
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 002975 630 ACMVDLLGRSGSLTEALEFIRSM--------PLSAD-VLVWRTFLGACRVHGDTELGKHAAEMILE 686 (861)
Q Consensus 630 ~~l~~~~~r~g~~~eA~~~~~~~--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 686 (861)
+-|...|.+.++..+|.++|.+. +..|+ ..+|..|..+|+..|+++.|+++.++++.
T Consensus 413 ~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 413 NQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 67777788888888777777664 24444 35888899999999999999999888873
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.00 E-value=2.9e-08 Score=92.02 Aligned_cols=162 Identities=17% Similarity=0.136 Sum_probs=135.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-hhHHHHHHH
Q 002975 557 SWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR-MEHYACMVD 634 (861)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~ 634 (861)
+...|.-+|.+.|+...|.+-+++.++ ..|+ ..++..+...|.+.|..+.|.+.|+... .+.|+ -++.|...-
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 344567788888888888888888888 5565 4578888888888888888888888877 45553 466777788
Q ss_pred HhhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhH
Q 002975 635 LLGRSGSLTEALEFIRSMPLSAD----VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEY 710 (861)
Q Consensus 635 ~~~r~g~~~eA~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~ 710 (861)
.++.+|++++|...|+++...|+ +.+|..++....+.|+.+.|+..+++.++++|+++.+...+++...+.|++-+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 88888999999999888754443 46888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 002975 711 VANIRKRMKERNL 723 (861)
Q Consensus 711 a~~~~~~m~~~~~ 723 (861)
|.-.++....++.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999998877654
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.00 E-value=1.5e-07 Score=97.53 Aligned_cols=229 Identities=12% Similarity=0.044 Sum_probs=152.3
Q ss_pred CChhHHHHHHHHHhhcC-CCCC--HHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHH
Q 002975 468 LNSEKAFELLHEIEDTG-VGTS--AYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAF 544 (861)
Q Consensus 468 g~~~~A~~l~~~m~~~g-~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 544 (861)
+..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...+...++.. +.+...|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34556666666666432 2222 2345566666777788888888888777765 556788999999999999999999
Q ss_pred HHHHhccC--C-CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 002975 545 QVFKEMED--R-NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHG 621 (861)
Q Consensus 545 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 621 (861)
..|+...+ | +..+|..+...+...|++++|++.|++..+ ..|+..........+...++.++|...|+.....
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-- 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-- 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--
Confidence 99998864 3 456888888889999999999999999988 5665432222222334567899999999765422
Q ss_pred CCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CC----CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-Cch
Q 002975 622 IVQRMEHYACMVDLLGRSGSLTEALEFIRSM-PL----SA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD-PAA 694 (861)
Q Consensus 622 ~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~-~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-~~~ 694 (861)
..|+...+ .++..+......+++.+.+.+. .. .| ....|..|+..+...|+.+.|+..++++++++|.+ ...
T Consensus 195 ~~~~~~~~-~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~ 273 (296)
T PRK11189 195 LDKEQWGW-NIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEH 273 (296)
T ss_pred CCccccHH-HHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHH
Confidence 23333222 3444433333333444333322 11 11 34588999999999999999999999999999854 333
Q ss_pred HHHHHHHH
Q 002975 695 HILLSNLY 702 (861)
Q Consensus 695 ~~~L~~~y 702 (861)
-..+..+.
T Consensus 274 ~~~~~e~~ 281 (296)
T PRK11189 274 RYALLELA 281 (296)
T ss_pred HHHHHHHH
Confidence 33444433
No 80
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.98 E-value=7.3e-06 Score=89.09 Aligned_cols=439 Identities=14% Similarity=0.091 Sum_probs=266.5
Q ss_pred CCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHH
Q 002975 212 FDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTE---KNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSG 288 (861)
Q Consensus 212 ~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 288 (861)
+..|..+|-.|.-.... +|+++.+.+.|++... .....|+.+-..|...|.-..|+.+++.-......|+..+...
T Consensus 319 ~qnd~ai~d~Lt~al~~-~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSR-CGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 66788888888888888 9999999999998664 3456799999999999999999999987665443455554444
Q ss_pred HHH-HHh-ccCCchHHHHHHHHHHHhC--C--CCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCcccHHHHHHHH
Q 002975 289 VVS-ACS-ELELFTSGKQLHSWAIRTG--L--ALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGY 362 (861)
Q Consensus 289 ll~-a~~-~~~~~~~a~~i~~~~~~~g--~--~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 362 (861)
+.. .|. +.+..+++...-..++... . ......+-.+--+|...-. ....+.-
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~-----------------~a~~~se----- 455 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR-----------------QANLKSE----- 455 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh-----------------cCCChHH-----
Confidence 433 343 3456666666555555421 1 1111122222222221100 0001100
Q ss_pred HhcCCChHHHHHHHHHHhhCC-CCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHH
Q 002975 363 VQSGGRDKEAVKLFSDMIQGQ-VAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMED 441 (861)
Q Consensus 363 ~~~g~~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 441 (861)
+... ..++++.+++..+.+ -.|+..-|.++- ++-.++++.|.+...+..+.+-..+...+..|.-.+...+++.+
T Consensus 456 -R~~~-h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~ 531 (799)
T KOG4162|consen 456 -RDAL-HKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKE 531 (799)
T ss_pred -HHHH-HHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHH
Confidence 0011 456777888776643 345555554444 34566888999999999888778888888888888888999999
Q ss_pred HHHHHHhcCCCCeehHHH---HHHHHHhcCChhHHHHHHHHHhhcC--CCCCHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 002975 442 ARKAFESLFEKNLVSYNT---MVDAYAKNLNSEKAFELLHEIEDTG--VGTSAYTFASLLSGASSIGAIGKGEQIHARII 516 (861)
Q Consensus 442 A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 516 (861)
|+.+.+...+.-...++. -+..-..-++.++|+.....+...- ..+-. ..++-....+....+.
T Consensus 532 Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q-----------~~~~~g~~~~lk~~l~ 600 (799)
T KOG4162|consen 532 ALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQ-----------QTLDEGKLLRLKAGLH 600 (799)
T ss_pred HHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHh-----------hhhhhhhhhhhhcccc
Confidence 998887764321111111 1222233566777776666654210 00000 0111111111111110
Q ss_pred --HhCCCCchhHHHHHHHHHH---ccCCHHHHHHHHHhccCCCc------hHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 002975 517 --KSGFESNHCIYNALISMYS---RCANVEAAFQVFKEMEDRNV------ISWTSMITGFAKHGFAARALEIFYKMLADG 585 (861)
Q Consensus 517 --~~~~~~~~~~~~~li~~y~---~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 585 (861)
.........++..+..... +.-..+..+..+.....|+. ..|......+.+.++.++|...+.+...
T Consensus 601 la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~-- 678 (799)
T KOG4162|consen 601 LALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK-- 678 (799)
T ss_pred cCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--
Confidence 0011112223322222221 11111122222222223332 3455666778888999999888888776
Q ss_pred CCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHhhhcCCHHHHHH--HHHhCC-CCC-CHH
Q 002975 586 IKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR-MEHYACMVDLLGRSGSLTEALE--FIRSMP-LSA-DVL 659 (861)
Q Consensus 586 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~r~g~~~eA~~--~~~~~~-~~p-~~~ 659 (861)
+.|- ...|......+...|.+++|.+.|.... -+.|+ +....++..++.+.|+-.-|.. ++..+. ..| +..
T Consensus 679 ~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~e 755 (799)
T KOG4162|consen 679 IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHE 755 (799)
T ss_pred cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHH
Confidence 4454 4466666677788899999999998766 56664 4567788889999887666666 777763 444 678
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCc
Q 002975 660 VWRTFLGACRVHGDTELGKHAAEMILEQDPQDPA 693 (861)
Q Consensus 660 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 693 (861)
.|..|+....+.|+.+.|...|.-++++++.+|.
T Consensus 756 aW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 756 AWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999999999999999999999999999988764
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=7.9e-06 Score=82.15 Aligned_cols=281 Identities=10% Similarity=-0.019 Sum_probs=196.7
Q ss_pred CCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHH-HHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHH
Q 002975 452 KNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYT-FASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNAL 530 (861)
Q Consensus 452 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 530 (861)
.|+.....+...+...|+.++|...|++.+. +.|+..+ .....-.+.+.|+.+....+...+.... +.+...|-.-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 4667788889999999999999999998874 3444332 1111223356777777777777665432 1111122222
Q ss_pred HHHHHccCCHHHHHHHHHhccCCC---chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCH
Q 002975 531 ISMYSRCANVEAAFQVFKEMEDRN---VISWTSMITGFAKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHAGLI 606 (861)
Q Consensus 531 i~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~ 606 (861)
........+++.|+.+-++..+-| +..+-.-...+.+.|+.++|.-.|+..+. +.| +..+|..|+.+|...|.+
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchH
Confidence 223334578888988888777544 44444444677889999999999999988 676 467999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCChhHHHHHH-HHh-hhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHhCCHHHHHHHHH
Q 002975 607 SEGWKHFRSMYDEHGIVQRMEHYACMV-DLL-GRSGSLTEALEFIRSM-PLSADVL-VWRTFLGACRVHGDTELGKHAAE 682 (861)
Q Consensus 607 ~~a~~~~~~m~~~~~~~p~~~~~~~l~-~~~-~r~g~~~eA~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~ 682 (861)
.||.-.-+...+.. ..+..+...+. +.+ -..---++|.+++++. ..+|+.. ..+.+...|...|..+.++..++
T Consensus 385 kEA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 385 KEANALANWTIRLF--QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHHHh--hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 99987776655332 22333333332 222 2233457899999886 4778743 56677788999999999999999
Q ss_pred HHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002975 683 MILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSWIEADNKVHKFHVGETSHPKTLEIYAELDQLA 762 (861)
Q Consensus 683 ~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~ 762 (861)
+.+...|| ...++.|++++...+.+.+|.+.+..... ..|+.+.-..-+..+.
T Consensus 463 ~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--------------------------~dP~~~~sl~Gl~~lE 515 (564)
T KOG1174|consen 463 KHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALR--------------------------QDPKSKRTLRGLRLLE 515 (564)
T ss_pred HHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------cCccchHHHHHHHHHH
Confidence 99999984 57889999999999999999998886654 3566666666667766
Q ss_pred HHHH
Q 002975 763 LKIK 766 (861)
Q Consensus 763 ~~~~ 766 (861)
++++
T Consensus 516 K~~~ 519 (564)
T KOG1174|consen 516 KSDD 519 (564)
T ss_pred hccC
Confidence 6665
No 82
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.88 E-value=1.6e-05 Score=88.68 Aligned_cols=558 Identities=13% Similarity=0.015 Sum_probs=286.2
Q ss_pred chHHHHHHHHhcCCChHHHHHHHHhcCC--CCCceeHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCcccHHHHHHHh
Q 002975 114 VILNSLISLYSKCGDLNEANKIFKSMGN--KRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELG-FCPNEYCFSAVIRAC 190 (861)
Q Consensus 114 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~ 190 (861)
..|..|-..|...-+...|.+.|+..-. .-|..+|......|++...++.|+.+.-.--+.. ...-..-|...--.+
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 4677788888877788889999887722 2466778889999999999999888833222110 000011122222224
Q ss_pred cCCcchhhhhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCCCCcchHHH---HHHHHHhcCCchHH
Q 002975 191 SNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEKNTVGWTL---MITRCTQLGCPRDA 267 (861)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~---li~~~~~~g~~~~A 267 (861)
-..++...+..-++...+.. |.|...|..|..+|.. +|++..|.++|++...-+..+|-. ....-+..|.+.+|
T Consensus 573 Lea~n~h~aV~~fQsALR~d--PkD~n~W~gLGeAY~~-sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD--PKDYNLWLGLGEAYPE-SGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC--chhHHHHHHHHHHHHh-cCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence 45556666666666666665 6777788888888888 888888888887766544333322 12233556777777
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHH-HhCCCCCCHHHHHHHHhc
Q 002975 268 IRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMY-AKCTVDGSVDDSRKVFDR 346 (861)
Q Consensus 268 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y-~~~g~~g~~~~A~~~~~~ 346 (861)
++.+......- .++. .+....|+.+...... ..++.+ .+.-+ -++++.+.|.-
T Consensus 650 ld~l~~ii~~~-----s~e~--------~~q~gLaE~~ir~akd-----------~~~~gf~~kavd--~~eksie~f~~ 703 (1238)
T KOG1127|consen 650 LDALGLIIYAF-----SLER--------TGQNGLAESVIRDAKD-----------SAITGFQKKAVD--FFEKSIESFIV 703 (1238)
T ss_pred HHHHHHHHHHH-----HHHH--------HhhhhHHHHHHHHHHH-----------HHHHHHhhhhhH--HHHHHHHHHHH
Confidence 77776654320 0000 0111111111111100 000000 00000 01111211111
Q ss_pred cCC----CCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCCh---H---HHHHHHHHHHH
Q 002975 347 MLD----HNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDS---N---VAEQVYTHAVK 416 (861)
Q Consensus 347 ~~~----~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~---~a~~i~~~~~~ 416 (861)
... .+...|-. ...|..+|.+..- . .|+......+..-.-..+.. + .|.+.+.. .
T Consensus 704 ~l~h~~~~~~~~Wi~-----------asdac~~f~q~e~-~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~--h 768 (1238)
T KOG1127|consen 704 SLIHSLQSDRLQWIV-----------ASDACYIFSQEEP-S-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA--H 768 (1238)
T ss_pred HHHHhhhhhHHHHHH-----------HhHHHHHHHHhcc-c-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH--H
Confidence 110 01111111 1123333333221 1 22222222222212222222 1 11111111 1
Q ss_pred cCCCCCcchhhHHHHHHHH----cC----CHHHHHHHHHhcC---CCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCC
Q 002975 417 RGRALDDCVGNSLISMYAR----SG----RMEDARKAFESLF---EKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGV 485 (861)
Q Consensus 417 ~g~~~~~~~~~~li~~~~~----~g----~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 485 (861)
..+..+...+..|...|.+ +| +...|...+.... ..+...||.|.-. ...|.+.-|.-.|-+-... .
T Consensus 769 lsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-e 846 (1238)
T KOG1127|consen 769 LSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-E 846 (1238)
T ss_pred HHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-c
Confidence 1112223333333332222 22 2235566665542 3455677776554 5556666666655554433 2
Q ss_pred CCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhc-----c---CCCchH
Q 002975 486 GTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEM-----E---DRNVIS 557 (861)
Q Consensus 486 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~-----~---~~~~~~ 557 (861)
+....+|..+.-.|....+++.|.+.+...+... +.+...|-...-.-...|+.-++..+|..- . -++..-
T Consensus 847 p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Y 925 (1238)
T KOG1127|consen 847 PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQY 925 (1238)
T ss_pred ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhH
Confidence 4456677777777788888888888888877653 334444433333334567777777777641 1 144555
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc--------CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhH
Q 002975 558 WTSMITGFAKHGFAARALEIFYKMLAD--------GIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEH 628 (861)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 628 (861)
|-.-..-..++|+.++-+...+.+-.. +-.|+ ...|...+....+.+.+++|.+...+...-...+-+...
T Consensus 926 w~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sq 1005 (1238)
T KOG1127|consen 926 WLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQ 1005 (1238)
T ss_pred HHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 555445556666665544433332211 12344 567888888888888888888777766533333344445
Q ss_pred HHH----HHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHH---HH
Q 002975 629 YAC----MVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLS---NL 701 (861)
Q Consensus 629 ~~~----l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~---~~ 701 (861)
|+. ...++...|.++.|..-+...+.+.|..+.++-+.. .-.|+++.+...+++++.+--++...-++++ ..
T Consensus 1006 ynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~ 1084 (1238)
T KOG1127|consen 1006 YNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVC 1084 (1238)
T ss_pred hhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHH
Confidence 553 334555677777777666665555555554444443 4467888888888888887655554334333 33
Q ss_pred HHHcCChhHHHHHHHHHH
Q 002975 702 YASAGHWEYVANIRKRMK 719 (861)
Q Consensus 702 y~~~g~~~~a~~~~~~m~ 719 (861)
...++.-+.|....-+..
T Consensus 1085 ~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1085 MGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred HhhcccchHHHHHHHHHH
Confidence 445556666665544443
No 83
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=5.7e-06 Score=81.31 Aligned_cols=378 Identities=12% Similarity=0.071 Sum_probs=207.0
Q ss_pred HHHHhCCCCCCHHHHHHHHhccCCC---CcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccC
Q 002975 326 DMYAKCTVDGSVDDSRKVFDRMLDH---NVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLL 402 (861)
Q Consensus 326 ~~y~~~g~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 402 (861)
..|.+.|+ +++|..++..+.+. +...|-.+.-.+.-.|. +.+|..+-.+.. -+.-....++....+.+
T Consensus 65 ~C~fhLgd---Y~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~-Y~eA~~~~~ka~-----k~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 65 HCYFHLGD---YEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ-YIEAKSIAEKAP-----KTPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHhhcc---HHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH-HHHHHHHHhhCC-----CChHHHHHHHHHHHHhC
Confidence 34445444 66666655554332 23344444444444455 556655544321 12222333444445566
Q ss_pred ChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC--CCeehHHHH-HHHHHhcCChhHHHHHHHH
Q 002975 403 DSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFE--KNLVSYNTM-VDAYAKNLNSEKAFELLHE 479 (861)
Q Consensus 403 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l-i~~~~~~g~~~~A~~l~~~ 479 (861)
+-++-..+++.+.+.- .-.-+|..+.-..-.+++|++++.++.. |+....|.- .-+|.+..-++-+.+++.-
T Consensus 136 dEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 136 DEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred cHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHH
Confidence 6666666665554321 1112334443334457777777777643 333344443 3355666666666666655
Q ss_pred HhhcCCCCCHHHHHHHHHHhhcccchHHHHH--------------HHHHHHHhCC-----------------CCchhHHH
Q 002975 480 IEDTGVGTSAYTFASLLSGASSIGAIGKGEQ--------------IHARIIKSGF-----------------ESNHCIYN 528 (861)
Q Consensus 480 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~--------------~~~~~~~~~~-----------------~~~~~~~~ 528 (861)
-.++ ++-+.+..+.......+.=+-..|.+ ..+.+.+.++ ..-+..--
T Consensus 211 YL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARl 289 (557)
T KOG3785|consen 211 YLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARL 289 (557)
T ss_pred HHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhh
Confidence 4433 22222233322222222111111111 1111222110 00122234
Q ss_pred HHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCC-------hHHHHHHHHHHHHcCCCCChH-HHHHHHHHH
Q 002975 529 ALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGF-------AARALEIFYKMLADGIKPNGI-TYIAVLSAC 600 (861)
Q Consensus 529 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~ 600 (861)
.|+-.|.+.+++++|..+.++...-.+.-|-.-.-.++.+|+ ..-|.+.|+-.-+++..-|.+ ---++.+++
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 556678899999999999988764343333222222333333 344555555544555555543 234556666
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHh-CCHHHH
Q 002975 601 SHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLS--ADVLVWRTFLGACRVH-GDTELG 677 (861)
Q Consensus 601 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~--p~~~~~~~ll~~~~~~-g~~~~a 677 (861)
--..++|+.+.+++.+. .|=...|...|+ +..+++..|++.+|+++|-....+ .|..+|.+++.-|..+ |..+.|
T Consensus 370 FL~~qFddVl~YlnSi~-sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIE-SYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHH-HHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 66778999999999887 555555555554 678899999999999999887422 3678898888777665 566655
Q ss_pred HHHHHHHhccCC-CC-CchHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 002975 678 KHAAEMILEQDP-QD-PAAHILLSNLYASAGHWEYVANIRKRMKERNL 723 (861)
Q Consensus 678 ~~~~~~~~~~~p-~~-~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~ 723 (861)
++..++.+. .+ .....++++.+.+.+.+--|.+.+..+.....
T Consensus 448 ---W~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 448 ---WDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred ---HHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 455566543 22 23455789999999999999998887765433
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.81 E-value=1.6e-06 Score=80.76 Aligned_cols=198 Identities=12% Similarity=0.058 Sum_probs=153.2
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhc
Q 002975 492 FASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKH 568 (861)
Q Consensus 492 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 568 (861)
..-+.-.|.+.|+...|+.-++++++.. +.+..++..+...|.+.|+.+.|.+.|+...+ .+-...|....-+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 3445556777777778887777777765 56677888888899999999999999987663 4567788888888999
Q ss_pred CChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHhhhcCCHHHHH
Q 002975 569 GFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR-MEHYACMVDLLGRSGSLTEAL 646 (861)
Q Consensus 569 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~r~g~~~eA~ 646 (861)
|++++|...|++....-.-|. ..||.++.-+..+.|+.+.|..+|++..+ +.|+ ......+.+.....|++..|.
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHH
Confidence 999999999999888533333 45888888888899999999999988773 3343 345667788888999999999
Q ss_pred HHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCc
Q 002975 647 EFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPA 693 (861)
Q Consensus 647 ~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 693 (861)
.+++... ..+...+.--.+..-...||.+.+-+.-.++....|....
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 9988763 4466666656667778889999988888888888887644
No 85
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=3e-05 Score=81.92 Aligned_cols=451 Identities=13% Similarity=0.143 Sum_probs=231.3
Q ss_pred cchHHHHHHHhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCcchhHHHHHHHHHcCCCCCcchHHH--HHH
Q 002975 44 EPLSNRLIYHLNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNS--LIS 121 (861)
Q Consensus 44 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--ll~ 121 (861)
..+++.+-.+..+|.+++|+..-..+...+ +-|..++.+-+-++.....++.|+.+.. ..+. ..+++. +=.
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEK 85 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEK 85 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHH
Confidence 356667778889999999999999999877 5567777788888888889999885522 2221 112222 355
Q ss_pred HHh--cCCChHHHHHHHHhcCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CcccHHHHHHHhcCCcchhh
Q 002975 122 LYS--KCGDLNEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCP-NEYCFSAVIRACSNTENVAI 198 (861)
Q Consensus 122 ~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~ 198 (861)
+|| +.+..++|+..++.... .|..+-..-...+.+.|++++|+++|+.+.+.+..- +...-..++.+-... .
T Consensus 86 AYc~Yrlnk~Dealk~~~~~~~-~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~ 160 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLKGLDR-LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----Q 160 (652)
T ss_pred HHHHHHcccHHHHHHHHhcccc-cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----h
Confidence 666 67899999999995544 444455555667789999999999999998764321 111122222221111 1
Q ss_pred hhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcC--------CCCCcc----------hHHHHHHHHHh
Q 002975 199 GHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKM--------TEKNTV----------GWTLMITRCTQ 260 (861)
Q Consensus 199 a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~--------~~~~~~----------~~~~li~~~~~ 260 (861)
+. +.+.+... ...+-..+-.....+.. .|++.+|+++++.. .+.|.. .--.|.-++-.
T Consensus 161 ~~-~~q~v~~v--~e~syel~yN~Ac~~i~-~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 161 VQ-LLQSVPEV--PEDSYELLYNTACILIE-NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred HH-HHHhccCC--CcchHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 11 11111111 11122233334445555 89999999999876 111111 11224456677
Q ss_pred cCCchHHHHHHHHHHHCCCCCCcccH---HHHHHHHhccCCchHH--HHHHHHHH-----------HhCCCCccchHHHH
Q 002975 261 LGCPRDAIRLFLDMILSGFLPDRFTL---SGVVSACSELELFTSG--KQLHSWAI-----------RTGLALDVCVGCSL 324 (861)
Q Consensus 261 ~g~~~~A~~l~~~m~~~g~~pd~~t~---~~ll~a~~~~~~~~~a--~~i~~~~~-----------~~g~~~~~~~~~~l 324 (861)
.|+-++|..++....+... +|.... ..-|.+.....++-.+ .+.+.... ...-.-....-+.+
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~l 315 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNAL 315 (652)
T ss_pred hcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999998887643 343222 2222223322222221 11111000 00000111222345
Q ss_pred HHHHHhCCCCCCHHHHHHHHhccCCCC-cccHHHHHHHHHhcCC-ChHHHHHHHHHHhhCCCCCCh--hhHHHHHHHhcc
Q 002975 325 VDMYAKCTVDGSVDDSRKVFDRMLDHN-VMSWTAIITGYVQSGG-RDKEAVKLFSDMIQGQVAPNH--FTFASVLKACGN 400 (861)
Q Consensus 325 i~~y~~~g~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~-~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~ 400 (861)
+.+|... .+.++++-...+... ...+..++....+... ....+.+++...-+. .|.. ......+.....
T Consensus 316 L~l~tnk-----~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 316 LALFTNK-----MDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHHhhh-----HHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHh
Confidence 5555432 555555555554432 2223333332222111 134444554444332 2222 222333344455
Q ss_pred cCChHHHHHHHH--------HHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhH
Q 002975 401 LLDSNVAEQVYT--------HAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEK 472 (861)
Q Consensus 401 ~~~~~~a~~i~~--------~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 472 (861)
.|+++.|.+++. .+.+.+ ..+.+..+++.+|.+.++.+.|..++++..
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~~~~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai---------------------- 444 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSILEAK--HLPGTVGAIVALYYKIKDNDSASAVLDSAI---------------------- 444 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhhhhc--cChhHHHHHHHHHHhccCCccHHHHHHHHH----------------------
Confidence 666666666665 222222 222333445555555555444444444331
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHH----HHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHH
Q 002975 473 AFELLHEIEDTGVGTSAYTFASLL----SGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFK 548 (861)
Q Consensus 473 A~~l~~~m~~~g~~p~~~t~~~ll----~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 548 (861)
..++. -.+......+++ ..-.+.|+.++|...++.+.+.+ ++|..+...++.+|++. +.+.|..+-.
T Consensus 445 --~~~~~-----~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 445 --KWWRK-----QQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred --HHHHH-----hcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 00000 111112222222 12233466666666666666654 56777777777777764 5666666655
Q ss_pred hcc
Q 002975 549 EME 551 (861)
Q Consensus 549 ~~~ 551 (861)
.+.
T Consensus 516 ~L~ 518 (652)
T KOG2376|consen 516 KLP 518 (652)
T ss_pred cCC
Confidence 554
No 86
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=4.3e-07 Score=88.09 Aligned_cols=223 Identities=15% Similarity=0.102 Sum_probs=170.8
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHhcC--CCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHH-HHHHHhhcc
Q 002975 426 GNSLISMYARSGRMEDARKAFESLF--EKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFA-SLLSGASSI 502 (861)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~a~~~~ 502 (861)
-+-+..+|.+.|.+.+|.+.|+.-. .+-+.||-.|-..|.+..+++.|+.+|.+-.+. .|-.+||. ...+.+...
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 3567788888899999998888763 356678888888999999999999998887753 56666654 455667778
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHH
Q 002975 503 GAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFY 579 (861)
Q Consensus 503 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 579 (861)
++.+.+.++++.+.+.. +.++.....+...|.-.++.+-|+..|+++.+ .+...|+.+.-+|.-.++++-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 88889999998888865 55666666677778888899999999987764 566788888888888899999999999
Q ss_pred HHHHcCCCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC
Q 002975 580 KMLADGIKPNG--ITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP 653 (861)
Q Consensus 580 ~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~ 653 (861)
+.+..-..|+. ..|..+.......|++.-|.+.|+.... .-....+.++.|.-+-.|.|++++|..+++.+.
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 88886555663 3677777777778888889888887662 112234667777777788888888888887663
No 87
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=0.00018 Score=78.63 Aligned_cols=60 Identities=17% Similarity=0.230 Sum_probs=48.1
Q ss_pred CCcchHHHHHH--HHhcCCChHHHHHHHHhcCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHH
Q 002975 111 PNSVILNSLIS--LYSKCGDLNEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLE 173 (861)
Q Consensus 111 ~~~~~~~~ll~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 173 (861)
-|..+-..+++ .|..-|+++.|.+-.+.+ .+...|..|.+.|++..+.+-|.-++-.|..
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~I---kS~~vW~nmA~McVkT~RLDVAkVClGhm~~ 785 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFI---KSDSVWDNMASMCVKTRRLDVAKVCLGHMKN 785 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHH---hhhHHHHHHHHHhhhhccccHHHHhhhhhhh
Confidence 45666666665 577889999998888777 4456799999999999999999888888863
No 88
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=0.00011 Score=80.09 Aligned_cols=136 Identities=10% Similarity=0.179 Sum_probs=72.2
Q ss_pred HhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCcchhHHHHHHHHHc--------CC-CCCcchHHHHHHHH
Q 002975 53 HLNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRS--------KL-EPNSVILNSLISLY 123 (861)
Q Consensus 53 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~-~~~~~~~~~ll~~~ 123 (861)
|+.-|+.+.|++-.+.+. +...|..+.+.|.+.++++.|+-.+..|... .. .++ ..-....-.-
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 345566777766555443 3456777777777777777776555554321 11 111 2222222223
Q ss_pred hcCCChHHHHHHHHhcCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhhhhhh
Q 002975 124 SKCGDLNEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIY 203 (861)
Q Consensus 124 ~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 203 (861)
...|.+++|..++.+-.. |..|=..|-..|.|++|+++-+.=-+-.++ .||-.-..-+-..+|.+.|.+.+
T Consensus 811 ieLgMlEeA~~lYr~ckR------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH------HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHH
Confidence 355777777777766554 555555566677777777766553322222 23333333333445555555544
Q ss_pred h
Q 002975 204 G 204 (861)
Q Consensus 204 ~ 204 (861)
+
T Consensus 882 E 882 (1416)
T KOG3617|consen 882 E 882 (1416)
T ss_pred H
Confidence 3
No 89
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.70 E-value=0.00047 Score=77.42 Aligned_cols=178 Identities=10% Similarity=-0.012 Sum_probs=91.9
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCcchhHHHHHHHHHcCCCCCcchHHHHHHHHhcCCChHHHHHHHHh
Q 002975 59 VQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGDLNEANKIFKS 138 (861)
Q Consensus 59 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 138 (861)
...|+..|-+..+..+ .=...|..|-..|...-+...|.+.|..+.+... .+...+....+.|++...++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 5555555555544321 1123455555555555566667777777766553 3566777788888888888888877433
Q ss_pred cCCCC--CceeHHHHHH--HHHhcCChhHHHHHHHHHHHcCCCC-CcccHHHHHHHhcCCcchhhhhhhhhhhhhccCCC
Q 002975 139 MGNKR--DIVSWSSMIS--SYVNRGKQVDAIHMFVEMLELGFCP-NEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFD 213 (861)
Q Consensus 139 ~~~~~--~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 213 (861)
..++. -...||.+-. .|.+.++..+|..-|+...+. .| |...|..+..+|...|....|..++..+.... |
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P 627 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--P 627 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC--CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--c
Confidence 32210 1112222222 234455555555555555442 22 44455555566666666666666655554433 2
Q ss_pred CchhHHHHHHHHhhhCCCCHHHHHHHHhcC
Q 002975 214 SDVCVGCALIDMFVKGSVDLESAYKVFDKM 243 (861)
Q Consensus 214 ~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~ 243 (861)
.+.+..--..-+-+. .|.+.+|...++.+
T Consensus 628 ~s~y~~fk~A~~ecd-~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECD-NGKYKEALDALGLI 656 (1238)
T ss_pred HhHHHHHHHHHHHHH-hhhHHHHHHHHHHH
Confidence 333333233333333 45555555554443
No 90
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.68 E-value=4.2e-07 Score=95.42 Aligned_cols=214 Identities=12% Similarity=0.138 Sum_probs=152.6
Q ss_pred cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHH
Q 002975 501 SIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEI 577 (861)
Q Consensus 501 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 577 (861)
+.|++.+|.-.|+..++.. +.+...|--|.-.....++-..|+..+++..+ .|....-+|.-.|...|.-.+|+..
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3444555555555555443 44556666666666666666666666666653 2445555666677777777777777
Q ss_pred HHHHHHcCCCCChH---------HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHH
Q 002975 578 FYKMLADGIKPNGI---------TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEF 648 (861)
Q Consensus 578 ~~~m~~~g~~p~~~---------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~ 648 (861)
++.=+... |-.. .+.. -..+.+...+....++|-.+....+..+|.+++.+|.-+|.-.|.+++|.+.
T Consensus 376 L~~Wi~~~--p~y~~l~~a~~~~~~~~-~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 376 LDKWIRNK--PKYVHLVSAGENEDFEN-TKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHhC--ccchhccccCccccccC-CcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 76655421 1100 0000 0122223334455666767766777778889999999999999999999999
Q ss_pred HHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 649 IRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 649 ~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
|+.+. .+| |..+||-|+..+....+.++|+.+|.+++++.|.-....+.|+-.|...|.++||.+.+-..
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 99874 555 68899999999999999999999999999999999999999999999999999999876644
No 91
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.66 E-value=0.00027 Score=75.82 Aligned_cols=408 Identities=15% Similarity=0.146 Sum_probs=234.1
Q ss_pred CCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccH-HHHHHHHhccCCchHHHHH
Q 002975 230 SVDLESAYKVFDKMTE---KNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTL-SGVVSACSELELFTSGKQL 305 (861)
Q Consensus 230 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~-~~ll~a~~~~~~~~~a~~i 305 (861)
.|+-++|......-.. ++.+.|..+.-.+-...++++|+..|...... .||.... .-+--.=++.++++..
T Consensus 54 lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~--- 128 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGY--- 128 (700)
T ss_pred ccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhH---
Confidence 5667777766655444 45677888877777788888888888877653 3443221 1000000111111111
Q ss_pred HHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCC-C
Q 002975 306 HSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQ-V 384 (861)
Q Consensus 306 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g-~ 384 (861)
. +.+..+-+........|..+..++.-.|. ...|..++++..+.. -
T Consensus 129 -------------------------------~-~tr~~LLql~~~~ra~w~~~Avs~~L~g~-y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 129 -------------------------------L-ETRNQLLQLRPSQRASWIGFAVAQHLLGE-YKMALEILEEFEKTQNT 175 (700)
T ss_pred -------------------------------H-HHHHHHHHhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcc
Confidence 1 11111111122345678888888888888 999999999887654 3
Q ss_pred CCChhhHHHHHH------HhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCC--Ceeh
Q 002975 385 APNHFTFASVLK------ACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEK--NLVS 456 (861)
Q Consensus 385 ~p~~~t~~~ll~------a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~ 456 (861)
.|+...|..... .....|.++.|.+.+..-... +......-..-.+.+.+.+++++|..++..+..+ |..-
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~ 254 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLD 254 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHH
Confidence 456655543322 234567777777666544322 1222333445667889999999999999998654 4444
Q ss_pred HHHH-HHHHHhcCChhHHH-HHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 002975 457 YNTM-VDAYAKNLNSEKAF-ELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMY 534 (861)
Q Consensus 457 ~~~l-i~~~~~~g~~~~A~-~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 534 (861)
|.-. ..++.+-.+.-+++ .+|....+.- +........=++......-.+....++....+.|+++ ++..+...|
T Consensus 255 Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y-~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLy 330 (700)
T KOG1156|consen 255 YYEGLEKALGKIKDMLEALKALYAILSEKY-PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLY 330 (700)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhcC-cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHH
Confidence 4444 34443344444454 5555554331 1111111111111111222333444556666777654 444455444
Q ss_pred HccCCHHH----HHHHHHhcc--------------CCCchHHHH--HHHHHHhcCChHHHHHHHHHHHHcCCCCChH-HH
Q 002975 535 SRCANVEA----AFQVFKEME--------------DRNVISWTS--MITGFAKHGFAARALEIFYKMLADGIKPNGI-TY 593 (861)
Q Consensus 535 ~~~g~~~~----A~~~~~~~~--------------~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~ 593 (861)
-.-...+- +..+...+. .|....|+. ++..|-..|+++.|..+.+..+. -.|+.+ -|
T Consensus 331 k~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly 408 (700)
T KOG1156|consen 331 KDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELY 408 (700)
T ss_pred hchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHH
Confidence 33222211 111222221 133445554 66778899999999999999988 578754 66
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-CChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCC-C--------HHHHHH
Q 002975 594 IAVLSACSHAGLISEGWKHFRSMYDEHGIV-QRMEHYACMVDLLGRSGSLTEALEFIRSMPLSA-D--------VLVWRT 663 (861)
Q Consensus 594 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p-~--------~~~~~~ 663 (861)
..=...+.|.|++++|..++++.. ++. ||...-+--+.-+.|+.+.++|.++......+. + ...|--
T Consensus 409 ~~KaRI~kH~G~l~eAa~~l~ea~---elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~ 485 (700)
T KOG1156|consen 409 LVKARIFKHAGLLDEAAAWLDEAQ---ELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQ 485 (700)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHH---hccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHh
Confidence 666788999999999999999887 332 344333345667789999999999877663211 1 345655
Q ss_pred HH--HHHHHhCCHHHHHHHHHHHh
Q 002975 664 FL--GACRVHGDTELGKHAAEMIL 685 (861)
Q Consensus 664 ll--~~~~~~g~~~~a~~~~~~~~ 685 (861)
+- .+|.+.|++-+|.+=+..+.
T Consensus 486 ~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 486 LEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HhhhHHHHHHHHHHHHHHHHhhHH
Confidence 43 45777777776665444443
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.66 E-value=7.3e-07 Score=90.93 Aligned_cols=147 Identities=16% Similarity=0.090 Sum_probs=92.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhH---HHHHHHHhhhcCC
Q 002975 565 FAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEH---YACMVDLLGRSGS 641 (861)
Q Consensus 565 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---~~~l~~~~~r~g~ 641 (861)
+...|++++|++++++- .+.......+..+.+.++++.|.+.++.|. .+..|... ..+.+.++.-.++
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~---~~~eD~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ---QIDEDSILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH---CCSCCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHhCchh
Confidence 33456666666555331 223344445556666666666666666665 22333221 2233333333346
Q ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCh-hHHHHHHHHH
Q 002975 642 LTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHW-EYVANIRKRM 718 (861)
Q Consensus 642 ~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~-~~a~~~~~~m 718 (861)
+.+|.-+|+++. ..+++.+.+.++.+....|++++|+..++++++.+|.++.+...++-+....|+. +.+.+.+..+
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 777777777763 3456777777888888889999999999999999999988888888888888988 5567777777
Q ss_pred Hh
Q 002975 719 KE 720 (861)
Q Consensus 719 ~~ 720 (861)
+.
T Consensus 263 ~~ 264 (290)
T PF04733_consen 263 KQ 264 (290)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 93
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.65 E-value=3.3e-05 Score=83.35 Aligned_cols=257 Identities=7% Similarity=-0.036 Sum_probs=142.1
Q ss_pred HHHhcCChhHHHHHHHHHhhcCCCCCHHHHHH---HHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCC
Q 002975 463 AYAKNLNSEKAFELLHEIEDTGVGTSAYTFAS---LLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCAN 539 (861)
Q Consensus 463 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~---ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 539 (861)
.+...|++++|.+++++..... +.|...+.. ........+....+.+.+... ....+........+...+...|+
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCC
Confidence 4456677777777777766542 222223321 111111233444444444331 11112223344455667777888
Q ss_pred HHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCh--HHHHHHHHHHHhcCCHHHHHHHH
Q 002975 540 VEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGI-KPNG--ITYIAVLSACSHAGLISEGWKHF 613 (861)
Q Consensus 540 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~ 613 (861)
+++|.+.+++..+ .+...+..+...|...|++++|+.++++...... .|+. ..|..+...+...|++++|..++
T Consensus 130 ~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 130 YDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888877663 3455667777778888888888888887776421 1222 23445667777888888888888
Q ss_pred HHHHhhcCCCCChhHH-H--HHHHHhhhcCCHHHHHHH---HHh---C-CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002975 614 RSMYDEHGIVQRMEHY-A--CMVDLLGRSGSLTEALEF---IRS---M-PLSADVLVWRTFLGACRVHGDTELGKHAAEM 683 (861)
Q Consensus 614 ~~m~~~~~~~p~~~~~-~--~l~~~~~r~g~~~eA~~~---~~~---~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 683 (861)
+.........+..... + .+...+...|..+.+..+ ... . +.............++...|+.+.|...++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~ 289 (355)
T cd05804 210 DTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAA 289 (355)
T ss_pred HHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 7765222211211111 1 222333334432222222 111 1 1111112222455566777888888888877
Q ss_pred HhccCC---------CCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 684 ILEQDP---------QDPAAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 684 ~~~~~p---------~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
+...-- .........+.++...|++++|.+.+......
T Consensus 290 l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 290 LKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 665221 13455668888999999999999988877653
No 94
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.65 E-value=0.0013 Score=70.85 Aligned_cols=580 Identities=12% Similarity=0.101 Sum_probs=317.1
Q ss_pred HhcCCcchhHHHHHHHHHcCCCCCcchHHHHHHHHhcCCChHHHHHHHHhc--CCCCCceeHHHHHHHHHhcCChhHHHH
Q 002975 89 IRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGDLNEANKIFKSM--GNKRDIVSWSSMISSYVNRGKQVDAIH 166 (861)
Q Consensus 89 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~ 166 (861)
-..+.+..++.+.+.+++.-++ ...+.....-.+...|+-++|......- ....+.+.|..+.-.+....++++|+.
T Consensus 18 yE~kQYkkgLK~~~~iL~k~~e-HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKKFPE-HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhCCc-cchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 3455666677666666663322 2333332222345567888887777654 223567789988888888889999999
Q ss_pred HHHHHHHcCCCCCcc-cHHHHHHHhcCCcchhhhhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCC
Q 002975 167 MFVEMLELGFCPNEY-CFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTE 245 (861)
Q Consensus 167 ~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~ 245 (861)
+|...... .||.. .+--+--.-+..+++ .+-..+++.++.. ..
T Consensus 97 cy~nAl~~--~~dN~qilrDlslLQ~QmRd~----------------~~~~~tr~~LLql------------------~~ 140 (700)
T KOG1156|consen 97 CYRNALKI--EKDNLQILRDLSLLQIQMRDY----------------EGYLETRNQLLQL------------------RP 140 (700)
T ss_pred HHHHHHhc--CCCcHHHHHHHHHHHHHHHhh----------------hhHHHHHHHHHHh------------------hh
Confidence 99987763 33321 111000000011111 1111222222211 11
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCC-CCCCcccHHHHHHH------HhccCCchHHHHHHHHHHHhCCCCcc
Q 002975 246 KNTVGWTLMITRCTQLGCPRDAIRLFLDMILSG-FLPDRFTLSGVVSA------CSELELFTSGKQLHSWAIRTGLALDV 318 (861)
Q Consensus 246 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a------~~~~~~~~~a~~i~~~~~~~g~~~~~ 318 (861)
..-..|..+..++--.|++..|..+.++..+.. -.|+...|.-...- ....|.++.+.+.+..-... +....
T Consensus 141 ~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkl 219 (700)
T KOG1156|consen 141 SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKL 219 (700)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHH
Confidence 245678888888888999999999998887664 34565555433322 33455555555544332211 11122
Q ss_pred chHHHHHHHHHhCCCCCCHHHHHHHHhccCCCC--cccHHH-HHHHHHhcCCChHHHH-HHHHHHhhCCCCCChhhHHHH
Q 002975 319 CVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHN--VMSWTA-IITGYVQSGGRDKEAV-KLFSDMIQGQVAPNHFTFASV 394 (861)
Q Consensus 319 ~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~~--~~~~~~-li~~~~~~g~~~~~A~-~l~~~m~~~g~~p~~~t~~~l 394 (861)
...-.-.+.+.+.++ +++|..++..+..+| ...|+- +..++.+--+ .-+++ .+|....+. .+-....-..=
T Consensus 220 a~~e~ka~l~~kl~~---lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d-~~~~lk~ly~~ls~~-y~r~e~p~Rlp 294 (700)
T KOG1156|consen 220 AFEETKADLLMKLGQ---LEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKD-MLEALKALYAILSEK-YPRHECPRRLP 294 (700)
T ss_pred HHhhhHHHHHHHHhh---HHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhhc-Ccccccchhcc
Confidence 223344566777666 999999999987653 344443 3344432222 23333 555554332 11111111111
Q ss_pred HHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHH----HHHHHHhcC--------------CCCeeh
Q 002975 395 LKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMED----ARKAFESLF--------------EKNLVS 456 (861)
Q Consensus 395 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~--------------~~~~~~ 456 (861)
++......-.+.....+....+.|+++ ++..+...|-.-...+- +..+...+. .|....
T Consensus 295 lsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pttll 371 (700)
T KOG1156|consen 295 LSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLL 371 (700)
T ss_pred HHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHH
Confidence 122222333344556666667777654 33334444432221111 111111111 122233
Q ss_pred H--HHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHH-HHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 002975 457 Y--NTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAY-TFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISM 533 (861)
Q Consensus 457 ~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 533 (861)
| --++..|-..|+++.|+..++.... ..|+.+ -|..=.+.+...|.++.|..++....+.. .+|..+-.--...
T Consensus 372 Wt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKY 448 (700)
T KOG1156|consen 372 WTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKY 448 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHH
Confidence 4 4467778889999999999998884 467655 34444577888999999999999998876 5677666677777
Q ss_pred HHccCCHHHHHHHHHhccCCC--c--------hHHHHH--HHHHHhcCChHHHHHHHHHHHHc--CC---CCCh------
Q 002975 534 YSRCANVEAAFQVFKEMEDRN--V--------ISWTSM--ITGFAKHGFAARALEIFYKMLAD--GI---KPNG------ 590 (861)
Q Consensus 534 y~~~g~~~~A~~~~~~~~~~~--~--------~~~~~l--i~~~~~~g~~~~A~~~~~~m~~~--g~---~p~~------ 590 (861)
..+.+++++|.++.......+ . -.|-.+ ..+|.+.|++.+|++-|....+. .+ +-|-
T Consensus 449 mLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhtyc~r 528 (700)
T KOG1156|consen 449 MLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTYCMR 528 (700)
T ss_pred HHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHh
Confidence 888999999999887766422 1 234443 35677888888888777665542 01 1222
Q ss_pred ----HHHHHHHHHHHhcCC-------HHHHHHHHHHHHhhcCC----CCChhHHH-HHHHHhhhcC-CHHHHHHHHHhC-
Q 002975 591 ----ITYIAVLSACSHAGL-------ISEGWKHFRSMYDEHGI----VQRMEHYA-CMVDLLGRSG-SLTEALEFIRSM- 652 (861)
Q Consensus 591 ----~t~~~ll~a~~~~g~-------~~~a~~~~~~m~~~~~~----~p~~~~~~-~l~~~~~r~g-~~~eA~~~~~~~- 652 (861)
.+|.-++.-+-..-. -..|++++-.|.+.-.. .++.+..+ -......++. .-..|.+.-+.+
T Consensus 529 k~tlrsYv~ll~~~d~L~~~p~y~~Aa~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk~~kk~~~e~~~~~ 608 (700)
T KOG1156|consen 529 KGTLRSYVELLEWEDNLRSSPYYLRAAKGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRKAKKKAKKEAKKKK 608 (700)
T ss_pred cCcHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCcccccccchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333332221111 12455555555422101 11122211 0111111111 111121111111
Q ss_pred -------------CCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 653 -------------PLSADVLVWRTFLGACRVHG-DTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 653 -------------~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
|..+|.. -+.....+.. -.++|...+..+....+++..+|.+-+.+|.+.|++.-+....+..
T Consensus 609 ~~~~~~~~s~~~~~~~~d~~---~~gekL~~t~~Pl~ea~kf~~~l~~~~~~~~~~~iL~~ely~rk~k~~l~~~~~~~~ 685 (700)
T KOG1156|consen 609 DKKKKEAKSQSGKPVDIDED---PFGEKLLKTEDPLEEARKFLPNLQHKGKEKGETYILSFELYYRKGKFLLALACLNNA 685 (700)
T ss_pred HHHHhhhccccCCCCCCCCc---chhhhHhhcCChHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 2233433 2333333333 4677999999999999999999999999999999999988877655
Q ss_pred Hh
Q 002975 719 KE 720 (861)
Q Consensus 719 ~~ 720 (861)
..
T Consensus 686 ~~ 687 (700)
T KOG1156|consen 686 EG 687 (700)
T ss_pred hh
Confidence 44
No 95
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.65 E-value=1.1e-05 Score=88.39 Aligned_cols=95 Identities=17% Similarity=0.152 Sum_probs=65.6
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC
Q 002975 629 YACMVDLLGRSGSLTEALEFIRSM-PLSAD-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAG 706 (861)
Q Consensus 629 ~~~l~~~~~r~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g 706 (861)
+..+...|.+.|++++|++++++. ...|. +..|..-...+...|+++.|....+.+.++++.|--...-.+..+.+.|
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~ 276 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAG 276 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCC
Confidence 344456667777777777777764 34554 4456666666777777777777777777777777666667777777777
Q ss_pred ChhHHHHHHHHHHhCCC
Q 002975 707 HWEYVANIRKRMKERNL 723 (861)
Q Consensus 707 ~~~~a~~~~~~m~~~~~ 723 (861)
+.++|.++.......+.
T Consensus 277 ~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 277 RIEEAEKTASLFTREDV 293 (517)
T ss_pred CHHHHHHHHHhhcCCCC
Confidence 77777777776655443
No 96
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.62 E-value=3.4e-05 Score=84.67 Aligned_cols=246 Identities=17% Similarity=0.163 Sum_probs=127.9
Q ss_pred HHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCe--eh-HHHHHHHHHhc-----
Q 002975 396 KACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNL--VS-YNTMVDAYAKN----- 467 (861)
Q Consensus 396 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~-~~~li~~~~~~----- 467 (861)
..+...|+++.|.+.+..-.+. +.....+.......|.+.|+.++|..++..+.+.|+ .. |..+..+....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 3445667777777777553332 334445566667777777777777777777754433 22 33333333111
Q ss_pred CChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchH-HHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHH
Q 002975 468 LNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIG-KGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQV 546 (861)
Q Consensus 468 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 546 (861)
...+...++++++...- |.......+.-.+.....+. .+..+.....+.|+++ +++.|-..|....+.+-..++
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 23555666666665443 33333333322222222222 3344445555556433 555666666654444444444
Q ss_pred HHhccC------------------CCchHH--HHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCC
Q 002975 547 FKEMED------------------RNVISW--TSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGL 605 (861)
Q Consensus 547 ~~~~~~------------------~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 605 (861)
+..... |....| .-+...|-..|++++|+++.++.++ ..|+ ...|..-...+-+.|+
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCC
Confidence 443220 111123 3344555566666666666666666 4555 3355556666666666
Q ss_pred HHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC
Q 002975 606 ISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSM 652 (861)
Q Consensus 606 ~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~ 652 (861)
+++|.+.++... .+.+ |...-+.-+..+.|+|++++|.+.+...
T Consensus 244 ~~~Aa~~~~~Ar---~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~F 288 (517)
T PF12569_consen 244 LKEAAEAMDEAR---ELDLADRYINSKCAKYLLRAGRIEEAEKTASLF 288 (517)
T ss_pred HHHHHHHHHHHH---hCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhh
Confidence 666666666555 3333 2223333445566666666666666554
No 97
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.61 E-value=5.9e-05 Score=74.16 Aligned_cols=312 Identities=12% Similarity=0.112 Sum_probs=172.4
Q ss_pred ccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHH---HHhcccCChHHHHHHHHHHHHcCCCCCcchh-hH
Q 002975 353 MSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVL---KACGNLLDSNVAEQVYTHAVKRGRALDDCVG-NS 428 (861)
Q Consensus 353 ~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll---~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~-~~ 428 (861)
.-.--+-..+...|+ +..|+.-|...++ .|...|..+. ..|...|+...|..=+..++.. .||-..- --
T Consensus 39 ekhlElGk~lla~~Q-~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQ 111 (504)
T KOG0624|consen 39 EKHLELGKELLARGQ-LSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHhhh-HHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHH
Confidence 334455666777777 7788888777755 2333444443 3455666666666666666554 3332111 11
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHH
Q 002975 429 LISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKG 508 (861)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 508 (861)
-...+.+.|.+++|..-|+.+.+.++.- +.-..++.+.-..++-. .....+..+...|+...+
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQNA 174 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhhH
Confidence 1234556777777777776664433210 01111111111111111 122233445566777888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhcc---CCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 002975 509 EQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEME---DRNVISWTSMITGFAKHGFAARALEIFYKMLADG 585 (861)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 585 (861)
......+++.. +-|...+..-.++|...|++..|+.-++... ..|..+.--+-..+...|+.+.++...++.++
T Consensus 175 i~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK-- 251 (504)
T KOG0624|consen 175 IEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK-- 251 (504)
T ss_pred HHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--
Confidence 88888777754 5677778888888888888888876665443 45666666667777888888888888888888
Q ss_pred CCCChHH-HHHH------H------HHHHhcCCHHHHHHHHHHHHhhcCCCCC-----hhHHHHHHHHhhhcCCHHHHHH
Q 002975 586 IKPNGIT-YIAV------L------SACSHAGLISEGWKHFRSMYDEHGIVQR-----MEHYACMVDLLGRSGSLTEALE 647 (861)
Q Consensus 586 ~~p~~~t-~~~l------l------~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l~~~~~r~g~~~eA~~ 647 (861)
+.||... |... . ......+.|.++.+-.+... ...|. ...+..+-..+...|++-||+.
T Consensus 252 ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vl---k~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 252 LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVL---KNEPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---hcCCcccceeeeeeheeeecccccCCHHHHHH
Confidence 7788542 2111 0 01122334444444444433 12232 1122233344555666666666
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCch
Q 002975 648 FIRSM-PLSAD-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAA 694 (861)
Q Consensus 648 ~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 694 (861)
...+. ...|| +.++.--..+|.....++.|+.-|+++.+.+|+|..+
T Consensus 329 qC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 329 QCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 55554 23343 4455555556666666666666666666666665443
No 98
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=7.3e-05 Score=78.39 Aligned_cols=371 Identities=13% Similarity=0.099 Sum_probs=236.4
Q ss_pred HHHhCCCCCCHHHHHHHHhccC---CCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCC-hhhHHHHHHHhcccC
Q 002975 327 MYAKCTVDGSVDDSRKVFDRML---DHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPN-HFTFASVLKACGNLL 402 (861)
Q Consensus 327 ~y~~~g~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~ 402 (861)
+....|+ ++.|...|.+.. .+|.+.|..-..+|+..|+ +++|++=-.+-++ +.|+ ...|.-.-.+....|
T Consensus 11 aa~s~~d---~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~-~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 11 AAFSSGD---FETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGS-YEKALKDATKTRR--LNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred hhccccc---HHHHHHHHHHHHccCCCccchhcchHHHHHHHhh-HHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcc
Confidence 3444555 999999998763 3478889999999999999 9988876666554 4564 456888888888999
Q ss_pred ChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhc-----CCCC--------eehHHHHHHHHHhc--
Q 002975 403 DSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESL-----FEKN--------LVSYNTMVDAYAKN-- 467 (861)
Q Consensus 403 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~~~--------~~~~~~li~~~~~~-- 467 (861)
++++|..-|.+-++.. +.+...++-|.+++.-. ..+.+.|..- ...+ ...|..++..+-++
T Consensus 85 ~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~---~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~ 160 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLED---YAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPT 160 (539)
T ss_pred cHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHH---HHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcH
Confidence 9999999999877764 55666777777777111 1111222110 0001 12333343332221
Q ss_pred --------CChhHHHHHHHHH-----hhcC-------CCC------------C----------HHHHHHHHHHhhcccch
Q 002975 468 --------LNSEKAFELLHEI-----EDTG-------VGT------------S----------AYTFASLLSGASSIGAI 505 (861)
Q Consensus 468 --------g~~~~A~~l~~~m-----~~~g-------~~p------------~----------~~t~~~ll~a~~~~~~~ 505 (861)
.+...|.-.+... ...| ..| | ..-...+.++..+..++
T Consensus 161 ~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f 240 (539)
T KOG0548|consen 161 SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDF 240 (539)
T ss_pred hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhH
Confidence 1111222111110 0011 111 0 01234556666666777
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCch----------HHHHHHHHHHhcCChHHHH
Q 002975 506 GKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVI----------SWTSMITGFAKHGFAARAL 575 (861)
Q Consensus 506 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~----------~~~~li~~~~~~g~~~~A~ 575 (861)
..+.+-+...++.. .+..-++....+|...|.+.+.....+...+.... +...+..+|.+.++++.|+
T Consensus 241 ~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai 318 (539)
T KOG0548|consen 241 ETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAI 318 (539)
T ss_pred HHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHH
Confidence 78888887777765 56666677778888888887776666654432211 2222445677778889999
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhH-HHHHHHHhhhcCCHHHHHHHHHhCC-
Q 002975 576 EIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEH-YACMVDLLGRSGSLTEALEFIRSMP- 653 (861)
Q Consensus 576 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~~l~~~~~r~g~~~eA~~~~~~~~- 653 (861)
.+|++.+..-..||..+ +....+++....+... -+.|.... .-.=..-+.+.|++.+|+..+.++.
T Consensus 319 ~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 319 KYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred HHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 99988776544544221 2223344444333322 33443311 1112566778899999999998873
Q ss_pred CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 654 LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 654 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
..| |...|.....++.+.|++..|..-++..++++|+....|.-=+-++....+|++|.+.+.+..+.
T Consensus 387 r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 387 RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334 67788888888889999999999999999999999999998899999999999999988877663
No 99
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.54 E-value=0.0012 Score=69.31 Aligned_cols=175 Identities=12% Similarity=0.111 Sum_probs=113.6
Q ss_pred hhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHccCCHHHHHHHHH
Q 002975 470 SEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFES-NHCIYNALISMYSRCANVEAAFQVFK 548 (861)
Q Consensus 470 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~ 548 (861)
.+...+.++++...-..--..+|...++..-+..-++.|+.+|.++.+.+..+ ++.++++++..|| .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 44455555555543222223456666777777777888888888887776655 7778888888776 467777888887
Q ss_pred hccC--CCchHH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC--
Q 002975 549 EMED--RNVISW-TSMITGFAKHGFAARALEIFYKMLADGIKPNG--ITYIAVLSACSHAGLISEGWKHFRSMYDEHG-- 621 (861)
Q Consensus 549 ~~~~--~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-- 621 (861)
--.+ +|...| +..+.-+...++-..|..+|++.+..++.||. ..|..+|.-=+.-|++....++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 5442 344333 44566666777777888888888877666663 4677777777777888777777777665554
Q ss_pred CCCChhHHHHHHHHhhhcCCHHHH
Q 002975 622 IVQRMEHYACMVDLLGRSGSLTEA 645 (861)
Q Consensus 622 ~~p~~~~~~~l~~~~~r~g~~~eA 645 (861)
..+...+-..+++.|+-.+....-
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~c~ 529 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYPCS 529 (656)
T ss_pred hcCCCChHHHHHHHHhhccccccc
Confidence 444444455556666555544433
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.52 E-value=7.9e-05 Score=91.39 Aligned_cols=294 Identities=11% Similarity=0.003 Sum_probs=173.5
Q ss_pred hHHHHHHHHcCCHHHHHHHHHhcC----CCC---e---e--hHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCH----H
Q 002975 427 NSLISMYARSGRMEDARKAFESLF----EKN---L---V--SYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSA----Y 490 (861)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~~~----~~~---~---~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~ 490 (861)
......+...|++++|...++... ..+ . . ....+...+...|++++|...+++....-...+. .
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 334444556677777666665441 111 1 0 1111223445678888888888776543111121 2
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHh----CC-CCchhHHHHHHHHHHccCCHHHHHHHHHhccC-------CC----
Q 002975 491 TFASLLSGASSIGAIGKGEQIHARIIKS----GF-ESNHCIYNALISMYSRCANVEAAFQVFKEMED-------RN---- 554 (861)
Q Consensus 491 t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~~---- 554 (861)
..+.+...+...|+++.|...+...... |- .........+...+...|++++|...+++... ++
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 3344455566778888888777766542 21 11123445566677788888888887776542 11
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHH-
Q 002975 555 VISWTSMITGFAKHGFAARALEIFYKMLADG--IKPN--GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHY- 629 (861)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~- 629 (861)
...+..+...+...|++++|...+++..... ..+. ..++..+.......|+.++|...++..............+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 1233445556667788999888888776531 1122 2344445666778888888888887775321111111111
Q ss_pred ----HHHHHHhhhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHHhCCHHHHHHHHHHHhccCC------CCCc
Q 002975 630 ----ACMVDLLGRSGSLTEALEFIRSMPLS--ADV----LVWRTFLGACRVHGDTELGKHAAEMILEQDP------QDPA 693 (861)
Q Consensus 630 ----~~l~~~~~r~g~~~eA~~~~~~~~~~--p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~ 693 (861)
......+...|+.+.|.+++...... ... ..+..+..++...|+.+.|...++++++... +...
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 11123445678888888888765311 111 1234566667788899999998888887522 1234
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 694 AHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 694 ~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
++..++.+|...|+.++|.+.+....+
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567888899999999999888877765
No 101
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.52 E-value=1.7e-06 Score=78.62 Aligned_cols=122 Identities=14% Similarity=0.067 Sum_probs=88.0
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCC-
Q 002975 576 EIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMP- 653 (861)
Q Consensus 576 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~- 653 (861)
.+|++.++ +.|+. +..+..++...|++++|...|+... .+.| +...|..+..++.+.|++++|...|++..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34555555 45553 4445666677777777777777766 3334 45566677777777777777777777763
Q ss_pred C-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 002975 654 L-SADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS 704 (861)
Q Consensus 654 ~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~ 704 (861)
. +.++..|..+..++...|+.++|+..+++++++.|+++..+...+++...
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 3 33677888888888899999999999999999999999988887776543
No 102
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.52 E-value=2.6e-06 Score=75.80 Aligned_cols=119 Identities=10% Similarity=0.078 Sum_probs=98.5
Q ss_pred ChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 002975 625 RMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLY 702 (861)
Q Consensus 625 ~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y 702 (861)
+.+..-.+...+...|++++|..+|+-.. ..| +..-|-.|...|+..|+++.|+.+|.++..++|+|+.++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34445556677788999999999998863 344 6778999999999999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 002975 703 ASAGHWEYVANIRKRMKERNLIKEAGCSWIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIK 766 (861)
Q Consensus 703 ~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~ 766 (861)
...|+.++|.+.++...... + .+|+..+|.++.+.....+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~---------------------~--~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC---------------------G--EVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh---------------------c--cChhHHHHHHHHHHHHHHhh
Confidence 99999999999999776521 1 46778888877777665554
No 103
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.51 E-value=3.5e-06 Score=90.96 Aligned_cols=219 Identities=14% Similarity=0.056 Sum_probs=119.2
Q ss_pred CCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 002975 419 RALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSG 498 (861)
Q Consensus 419 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 498 (861)
++|-......+...+.+.|-..+|..+|+++ ..|...|.+|+..|+..+|..+..+-.+ -+||+..|
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~ly------ 460 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLY------ 460 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhH------
Confidence 3454555566777778888888888888776 3566677777777777777777666654 24444444
Q ss_pred hhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHH
Q 002975 499 ASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIF 578 (861)
Q Consensus 499 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 578 (861)
..|.+......-+++|.++++....+--..|+. -....++++++.+.|
T Consensus 461 -----------------------------c~LGDv~~d~s~yEkawElsn~~sarA~r~~~~---~~~~~~~fs~~~~hl 508 (777)
T KOG1128|consen 461 -----------------------------CLLGDVLHDPSLYEKAWELSNYISARAQRSLAL---LILSNKDFSEADKHL 508 (777)
T ss_pred -----------------------------HHhhhhccChHHHHHHHHHhhhhhHHHHHhhcc---ccccchhHHHHHHHH
Confidence 444444444444455555555433221111111 112356677777777
Q ss_pred HHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHhhhcCCHHHHHHHHHhCC--C
Q 002975 579 YKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR-MEHYACMVDLLGRSGSLTEALEFIRSMP--L 654 (861)
Q Consensus 579 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~ 654 (861)
+.-.+ +.|- ..+|..+..+..+.++++.|.+.|.... ...|+ .+.|+.+-.+|.+.|+..+|...++++- .
T Consensus 509 e~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~rcv---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 509 ERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHHHHh---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 66665 3342 4466666666666667777666666554 23332 2333444444444444444444433331 1
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Q 002975 655 SADVLVWRTFLGACRVHGDTELGKHAAEMILEQ 687 (861)
Q Consensus 655 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 687 (861)
.-+..+|....-.....|..+.|++++.+++++
T Consensus 584 ~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 584 YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 122345555555555666666666666665554
No 104
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.49 E-value=4.8e-06 Score=85.02 Aligned_cols=155 Identities=12% Similarity=0.093 Sum_probs=90.7
Q ss_pred HHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh--c--CCH
Q 002975 531 ISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSH--A--GLI 606 (861)
Q Consensus 531 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~--g~~ 606 (861)
..+|...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+ ...| .+...+..++.. . +.+
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD-~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDED-SILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCC-HHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc-HHHHHHHHHHHHHHhCchhH
Confidence 34555666677666666554 3444445556666677777777777777765 3333 233334443322 2 246
Q ss_pred HHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCH-HHHHHHHHH
Q 002975 607 SEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDT-ELGKHAAEM 683 (861)
Q Consensus 607 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~ 683 (861)
.+|..+|+++.+.+ .++....+.+..+....|+++||.+++++.. ..| ++.++-.++..+...|+. +.+.+...+
T Consensus 184 ~~A~y~f~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 67777777765433 3555666666677777777777777776642 233 345666666666666766 667778888
Q ss_pred HhccCCCCC
Q 002975 684 ILEQDPQDP 692 (861)
Q Consensus 684 ~~~~~p~~~ 692 (861)
+...+|+++
T Consensus 262 L~~~~p~h~ 270 (290)
T PF04733_consen 262 LKQSNPNHP 270 (290)
T ss_dssp CHHHTTTSH
T ss_pred HHHhCCCCh
Confidence 888888653
No 105
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.48 E-value=1.3e-05 Score=80.55 Aligned_cols=180 Identities=13% Similarity=0.069 Sum_probs=126.2
Q ss_pred CchhHHHHHHHHHHccCCHHHHHHHHHhccC--CC-c---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH----
Q 002975 522 SNHCIYNALISMYSRCANVEAAFQVFKEMED--RN-V---ISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGI---- 591 (861)
Q Consensus 522 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---- 591 (861)
.....+..+...|.+.|++++|...|+++.. |+ . .+|..+...|...|++++|+..|+++.+ ..|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHH
Confidence 4456677788888889999999999987764 32 1 3667788888899999999999999988 345422
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHhhcCCCCChh-HHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHH
Q 002975 592 TYIAVLSACSHA--------GLISEGWKHFRSMYDEHGIVQRME-HYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWR 662 (861)
Q Consensus 592 t~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~ 662 (861)
++..+..++... |+.++|.+.|+.+.+. .|+.. .+..+.. .+...... .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~----~~~~~~~~-----------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKR----MDYLRNRL-----------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHH----HHHHHHHH-----------HHHHH
Confidence 455555666554 6788888888887743 34322 1111111 11111110 01122
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 663 TFLGACRVHGDTELGKHAAEMILEQDPQDP---AAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 663 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
.+...+...|+.+.|+..++++++..|+++ .++..++.+|...|++++|...++.+..+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456678889999999999999999987654 68899999999999999999998877653
No 106
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.47 E-value=1.2e-05 Score=77.37 Aligned_cols=96 Identities=14% Similarity=0.151 Sum_probs=64.1
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHH-HHhCC--HHHHHHHHHHHhccCCCCCchHHHHHH
Q 002975 626 MEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGAC-RVHGD--TELGKHAAEMILEQDPQDPAAHILLSN 700 (861)
Q Consensus 626 ~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~L~~ 700 (861)
...|..+...|...|++++|.+.+++.. ..| +..+|..+..+. ...|+ .+.|..+++++++++|+++.++..|+.
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~ 152 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLAS 152 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 3444444445555555555555554442 233 556666666653 55565 488888888888888888888888888
Q ss_pred HHHHcCChhHHHHHHHHHHhC
Q 002975 701 LYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 701 ~y~~~g~~~~a~~~~~~m~~~ 721 (861)
.+...|++++|...++++.+.
T Consensus 153 ~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 153 DAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHcCCHHHHHHHHHHHHhh
Confidence 888888888888888877663
No 107
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.46 E-value=0.00028 Score=76.05 Aligned_cols=195 Identities=12% Similarity=0.077 Sum_probs=101.7
Q ss_pred HHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC-----CCc--hHHHHHHHHH
Q 002975 493 ASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED-----RNV--ISWTSMITGF 565 (861)
Q Consensus 493 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~--~~~~~li~~~ 565 (861)
..+...+...|++++|.+.++...+.. +.+...+..+...|...|++++|...+++... ++. ..|..+...+
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 344445566666666666666666654 44455666677777777777777777776553 111 2344566677
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC-hHHH-H--HHHHHHHhcCCHHHHHHH--HHHHHhhcCC-CCChhHHHHHHHHhhh
Q 002975 566 AKHGFAARALEIFYKMLADGIKPN-GITY-I--AVLSACSHAGLISEGWKH--FRSMYDEHGI-VQRMEHYACMVDLLGR 638 (861)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~-~--~ll~a~~~~g~~~~a~~~--~~~m~~~~~~-~p~~~~~~~l~~~~~r 638 (861)
...|++++|+.+|++.......+. .... . .++.-+...|..+.+.++ .........- ......-...+..+..
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence 777777777777777654321111 1111 1 222223333433222222 1111101000 0011111234556677
Q ss_pred cCCHHHHHHHHHhCC--CCC---C------HHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Q 002975 639 SGSLTEALEFIRSMP--LSA---D------VLVWRTFLGACRVHGDTELGKHAAEMILEQD 688 (861)
Q Consensus 639 ~g~~~eA~~~~~~~~--~~p---~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 688 (861)
.|+.++|...++.+. ... . ..+.-....++...|+.+.|...+..++.+-
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 888888888777652 111 1 1111222334667888888888888777653
No 108
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.45 E-value=0.0014 Score=80.63 Aligned_cols=409 Identities=9% Similarity=-0.014 Sum_probs=241.8
Q ss_pred chHHHHHHHHHHHCCC--CC-C----cccHHHHHHHHhcc----CCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCC
Q 002975 264 PRDAIRLFLDMILSGF--LP-D----RFTLSGVVSACSEL----ELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCT 332 (861)
Q Consensus 264 ~~~A~~l~~~m~~~g~--~p-d----~~t~~~ll~a~~~~----~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g 332 (861)
.+.+.++++++...|+ .+ + .+.|..++..+... .+.+....+|... ...|...|
T Consensus 291 ~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~~~~lh~ra---------------a~~~~~~g 355 (903)
T PRK04841 291 EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQELPELHRAA---------------AEAWLAQG 355 (903)
T ss_pred CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchHHHHHHHHH---------------HHHHHHCC
Confidence 3445677777777664 11 1 25566666654432 1233344444433 23344444
Q ss_pred CCCCHHHHHHHHhccCCCCccc--HHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHH
Q 002975 333 VDGSVDDSRKVFDRMLDHNVMS--WTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQV 410 (861)
Q Consensus 333 ~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i 410 (861)
+ +.+|..........+... ...........|. .+.+..++..+.......+..........+...|+++++...
T Consensus 356 ~---~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~-~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~ 431 (903)
T PRK04841 356 F---PSEAIHHALAAGDAQLLRDILLQHGWSLFNQGE-LSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTL 431 (903)
T ss_pred C---HHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCC-hHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHH
Confidence 4 666666655554432211 1111223444566 777767766652211111222223333444567889999888
Q ss_pred HHHHHHcCCC------CC--cchhhHHHHHHHHcCCHHHHHHHHHhcCC----CCe----ehHHHHHHHHHhcCChhHHH
Q 002975 411 YTHAVKRGRA------LD--DCVGNSLISMYARSGRMEDARKAFESLFE----KNL----VSYNTMVDAYAKNLNSEKAF 474 (861)
Q Consensus 411 ~~~~~~~g~~------~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~g~~~~A~ 474 (861)
+....+.--. +. ......+...+...|++++|...+++... .+. ..++.+...+...|++++|.
T Consensus 432 l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~ 511 (903)
T PRK04841 432 LARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARAL 511 (903)
T ss_pred HHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8877543111 11 11222234456679999999999887532 121 23455666778899999999
Q ss_pred HHHHHHhhcCCC-----CCHHHHHHHHHHhhcccchHHHHHHHHHHHHh----CCCC---chhHHHHHHHHHHccCCHHH
Q 002975 475 ELLHEIEDTGVG-----TSAYTFASLLSGASSIGAIGKGEQIHARIIKS----GFES---NHCIYNALISMYSRCANVEA 542 (861)
Q Consensus 475 ~l~~~m~~~g~~-----p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~li~~y~~~g~~~~ 542 (861)
..+.+.....-. ....++..+...+...|+++.|.+.+...... +... ....+..+...+...|++++
T Consensus 512 ~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 591 (903)
T PRK04841 512 AMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDE 591 (903)
T ss_pred HHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999887643111 11234555666778899999999988876542 2211 23345556677788899999
Q ss_pred HHHHHHhccC------C--CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChHHH-----HHHHHHHHhcCCHHH
Q 002975 543 AFQVFKEMED------R--NVISWTSMITGFAKHGFAARALEIFYKMLADGIK-PNGITY-----IAVLSACSHAGLISE 608 (861)
Q Consensus 543 A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~-----~~ll~a~~~~g~~~~ 608 (861)
|...+++... + ....+..+...+...|++++|...+++.....-. .....+ ...+..+...|..+.
T Consensus 592 A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 671 (903)
T PRK04841 592 AEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEA 671 (903)
T ss_pred HHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHH
Confidence 9998887642 1 1234445667788999999999999888653111 111111 112234455789999
Q ss_pred HHHHHHHHHhhcCCCCC--hhHHHHHHHHhhhcCCHHHHHHHHHhCC-------CCCC-HHHHHHHHHHHHHhCCHHHHH
Q 002975 609 GWKHFRSMYDEHGIVQR--MEHYACMVDLLGRSGSLTEALEFIRSMP-------LSAD-VLVWRTFLGACRVHGDTELGK 678 (861)
Q Consensus 609 a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~r~g~~~eA~~~~~~~~-------~~p~-~~~~~~ll~~~~~~g~~~~a~ 678 (861)
|..++........-.+. ...+..+..++...|+.++|...+++.. ..++ ..++..+..++...|+.+.|.
T Consensus 672 A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~ 751 (903)
T PRK04841 672 AANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQ 751 (903)
T ss_pred HHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99988765421100110 1113456678889999999999988762 1112 235556667789999999999
Q ss_pred HHHHHHhccCCCC
Q 002975 679 HAAEMILEQDPQD 691 (861)
Q Consensus 679 ~~~~~~~~~~p~~ 691 (861)
..+++++++....
T Consensus 752 ~~L~~Al~la~~~ 764 (903)
T PRK04841 752 RVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHhCcc
Confidence 9999999976543
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.44 E-value=6.1e-06 Score=75.05 Aligned_cols=99 Identities=7% Similarity=-0.081 Sum_probs=87.3
Q ss_pred CCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHH
Q 002975 621 GIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILL 698 (861)
Q Consensus 621 ~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 698 (861)
.+.|+ .+..+...+...|++++|.+.|+... ..| +...|..+..++...|+++.|+..++++++++|+++.++..+
T Consensus 21 ~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~l 98 (144)
T PRK15359 21 SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQT 98 (144)
T ss_pred HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 34454 35567888999999999999999874 444 678999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHhC
Q 002975 699 SNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 699 ~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
+.+|...|++++|.+.+....+.
T Consensus 99 g~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 99 GVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999987663
No 110
>PLN02789 farnesyltranstransferase
Probab=98.43 E-value=5.7e-05 Score=78.22 Aligned_cols=211 Identities=13% Similarity=0.138 Sum_probs=123.5
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC-CHHHHHHHHHhccC---CCchHHHHHHHHHHhcCCh--HHHHHH
Q 002975 504 AIGKGEQIHARIIKSGFESNHCIYNALISMYSRCA-NVEAAFQVFKEMED---RNVISWTSMITGFAKHGFA--ARALEI 577 (861)
Q Consensus 504 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~~ 577 (861)
..++|..+...+++.. +.+..+|+....++.+.| ++++++..++++.+ ++..+|+.....+.+.|+. ++++.+
T Consensus 52 ~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 52 RSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 3444444444444432 223334444444444445 45666666665552 3334555444444444442 456666
Q ss_pred HHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhc---CC----HHHHHHHH
Q 002975 578 FYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRS---GS----LTEALEFI 649 (861)
Q Consensus 578 ~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~---g~----~~eA~~~~ 649 (861)
++++++ ..| |..+|.....++.+.|+++++++.++.+++.. .-+...|+....++.+. |. .++++++.
T Consensus 131 ~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 131 TRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 666666 334 34566666666666677777777777666321 11223333333333222 22 34566666
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHHhC----CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC-----------------
Q 002975 650 RSM-PLSA-DVLVWRTFLGACRVHG----DTELGKHAAEMILEQDPQDPAAHILLSNLYASAG----------------- 706 (861)
Q Consensus 650 ~~~-~~~p-~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g----------------- 706 (861)
+++ ...| |...|+.+.+.+..++ +...+...+.++++.+|.++-+...|+++|+...
T Consensus 207 ~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 286 (320)
T PLN02789 207 IDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEEL 286 (320)
T ss_pred HHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcccccc
Confidence 443 3444 6789999999988743 4566888899999999999999999999998743
Q ss_pred -ChhHHHHHHHHHH
Q 002975 707 -HWEYVANIRKRMK 719 (861)
Q Consensus 707 -~~~~a~~~~~~m~ 719 (861)
..++|.++.+.+.
T Consensus 287 ~~~~~a~~~~~~l~ 300 (320)
T PLN02789 287 SDSTLAQAVCSELE 300 (320)
T ss_pred ccHHHHHHHHHHHH
Confidence 2356777777663
No 111
>PF12854 PPR_1: PPR repeat
Probab=98.41 E-value=4.2e-07 Score=58.57 Aligned_cols=33 Identities=39% Similarity=0.748 Sum_probs=26.3
Q ss_pred CCCCchhHHHHHHHHHHccCCHHHHHHHHHhcc
Q 002975 519 GFESNHCIYNALISMYSRCANVEAAFQVFKEME 551 (861)
Q Consensus 519 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 551 (861)
|+.||..+||+||++|++.|++++|.++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888774
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.41 E-value=2.4e-05 Score=90.17 Aligned_cols=207 Identities=16% Similarity=0.190 Sum_probs=160.2
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--------CCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002975 512 HARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED--------RNVISWTSMITGFAKHGFAARALEIFYKMLA 583 (861)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 583 (861)
|++++... +.+...|-..|.-....+++++|++++++... .-...|.++++.-...|.-+...++|+++.+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 33344433 44566777777778888888998888887763 1235788888887888888888889998887
Q ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC---CHH
Q 002975 584 DGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA---DVL 659 (861)
Q Consensus 584 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p---~~~ 659 (861)
. ---...|..|...|.+.+..++|.++++.|.++++ -....|...++.+.++.+-++|..+++++. .-| ...
T Consensus 1526 y--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1526 Y--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred h--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 3 22245678888888899999999999999988777 566778888888899988888888887752 223 344
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 002975 660 VWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNL 723 (861)
Q Consensus 660 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~ 723 (861)
...-.+..-.++||.+.|..+|+-++.-.|.-...|..+.+.-.+.|..+.++.++++.-..++
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 5566667778889999999999999999999888898888888889999999999988877655
No 113
>PF12854 PPR_1: PPR repeat
Probab=98.37 E-value=4.2e-07 Score=58.57 Aligned_cols=32 Identities=41% Similarity=0.654 Sum_probs=20.9
Q ss_pred CCCCCcchHHHHHHHHhcCCChHHHHHHHHhc
Q 002975 108 KLEPNSVILNSLISLYSKCGDLNEANKIFKSM 139 (861)
Q Consensus 108 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 139 (861)
|+.||..+||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 114
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=0.00027 Score=74.33 Aligned_cols=244 Identities=15% Similarity=0.088 Sum_probs=141.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCC------chhHHHHHHHH
Q 002975 460 MVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFES------NHCIYNALISM 533 (861)
Q Consensus 460 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~ 533 (861)
+.++.-+..+++.|++-+....... -+..-++..-.++...|...+....-...++.|... =......+..+
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 4444444555555555555554332 222223333334445554444444433333332110 01112224457
Q ss_pred HHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH-HHHHHHHHHHhcCCHHHHHHH
Q 002975 534 YSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGI-TYIAVLSACSHAGLISEGWKH 612 (861)
Q Consensus 534 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~ 612 (861)
|.+.++++.|...|.+...+-.. -....+....++++...+...- +.|+.. -...-...+.+.|++.+|+..
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~ 380 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKH 380 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHH
Confidence 77778888888888875421111 1111223345555555555444 445432 223335667778888888888
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Q 002975 613 FRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM-PLSAD-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ 690 (861)
Q Consensus 613 ~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 690 (861)
|.++++.. +-|...|+...-+|.+.|.+.+|++-.+.. ...|+ .-.|.--+.+++...+++.|..+|++.++++|+
T Consensus 381 YteAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 381 YTEAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 88887332 335567888888888888888887766554 24444 335555566677778999999999999999999
Q ss_pred CCchHHHHHHHHHHcCChhHHHHH
Q 002975 691 DPAAHILLSNLYASAGHWEYVANI 714 (861)
Q Consensus 691 ~~~~~~~L~~~y~~~g~~~~a~~~ 714 (861)
+......+..++..+.....-.++
T Consensus 459 ~~e~~~~~~rc~~a~~~~~~~ee~ 482 (539)
T KOG0548|consen 459 NAEAIDGYRRCVEAQRGDETPEET 482 (539)
T ss_pred hHHHHHHHHHHHHHhhcCCCHHHH
Confidence 999988888888765333333333
No 115
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.33 E-value=0.012 Score=66.16 Aligned_cols=161 Identities=14% Similarity=0.077 Sum_probs=85.9
Q ss_pred HHHHHHHHhhcccchHHHH---HHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC----CCchHHHHHHH
Q 002975 491 TFASLLSGASSIGAIGKGE---QIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED----RNVISWTSMIT 563 (861)
Q Consensus 491 t~~~ll~a~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~ 563 (861)
+.+.++..|-+.++..... -+++...... +.|..+--.||..|+-.|-+..|.++|+.+.- .|...|- +..
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~ 515 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFR 515 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHH
Confidence 3455667777776665333 3333333322 34455556788888888888888888887763 3333332 234
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHH---HHHHHHhhcCCCCChhHHHHHHHHhhhc
Q 002975 564 GFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWK---HFRSMYDEHGIVQRMEHYACMVDLLGRS 639 (861)
Q Consensus 564 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~---~~~~m~~~~~~~p~~~~~~~l~~~~~r~ 639 (861)
-+...|++..+...+++..+- +.-+ ..+-..+..||. .|.+.+-.+ .=+++. ...-.....+-+..++.+...
T Consensus 516 ~~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AYr-~g~ySkI~em~~fr~rL~-~S~q~~a~~VE~~~l~ll~~~ 592 (932)
T KOG2053|consen 516 RAETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAYR-RGAYSKIPEMLAFRDRLM-HSLQKWACRVENLQLSLLCNA 592 (932)
T ss_pred HHHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHHH-cCchhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhC
Confidence 455667777777776665542 0111 123333334443 344433322 222222 100111122345566777888
Q ss_pred CCHHHHHHHHHhCCCCC
Q 002975 640 GSLTEALEFIRSMPLSA 656 (861)
Q Consensus 640 g~~~eA~~~~~~~~~~p 656 (861)
++.++=...+..|..+|
T Consensus 593 ~~~~q~~~~~~~~~l~~ 609 (932)
T KOG2053|consen 593 DRGTQLLKLLESMKLPP 609 (932)
T ss_pred CcHHHHHHHHhccccCc
Confidence 88888888888775333
No 116
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=5.5e-05 Score=72.91 Aligned_cols=306 Identities=17% Similarity=0.134 Sum_probs=161.2
Q ss_pred ChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC--CCeehHHH-HHHH
Q 002975 387 NHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFE--KNLVSYNT-MVDA 463 (861)
Q Consensus 387 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~ 463 (861)
...-+.+++..+.+..+++.+.+++..-.+.. +.+....+.|..+|-...++..|-..++++.. |...-|.. -...
T Consensus 9 ~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 9 PEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQS 87 (459)
T ss_pred CCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHH
Confidence 33345555555666666777777766655543 33455566677777778888888888877743 22222221 1344
Q ss_pred HHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHH--hhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHH
Q 002975 464 YAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSG--ASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVE 541 (861)
Q Consensus 464 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 541 (861)
+-+.+.+.+|+.+...|.+. |+...-..-+.+ ..+.+++..+..+.++.-.. .+..+.+...-..-+.|+++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHH
Confidence 55677788888888777643 221111111111 12334444454444443221 13333333333445666677
Q ss_pred HHHHHHHhccC----CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002975 542 AAFQVFKEMED----RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMY 617 (861)
Q Consensus 542 ~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 617 (861)
+|.+-|+...+ .....||.-+ +..+.|++..|+++..++++.|++--+. +. -|...++... +.
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPE-lg--------IGm~tegiDv-rs-- 228 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPE-LG--------IGMTTEGIDV-RS-- 228 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCc-cC--------ccceeccCch-hc--
Confidence 77666666553 2234454433 3345566667777766666666431110 00 0000000000 00
Q ss_pred hhcCCCCChhHHHHHH-------HHhhhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 002975 618 DEHGIVQRMEHYACMV-------DLLGRSGSLTEALEFIRSMP----LSADVLVWRTFLGACRVHGDTELGKHAAEMILE 686 (861)
Q Consensus 618 ~~~~~~p~~~~~~~l~-------~~~~r~g~~~eA~~~~~~~~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 686 (861)
--.|-.-|-+.++ ..+.+.|+++.|.+-+..|| .+.|+++...+.-. -..++.-.+.+-+.-+++
T Consensus 229 ---vgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~ 304 (459)
T KOG4340|consen 229 ---VGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQ 304 (459)
T ss_pred ---ccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHh
Confidence 0000111222222 24567788888888888876 33466665443321 233455556666666777
Q ss_pred cCCCCCchHHHHHHHHHHcCChhHHHHHHH
Q 002975 687 QDPQDPAAHILLSNLYASAGHWEYVANIRK 716 (861)
Q Consensus 687 ~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~ 716 (861)
++|--..++..|--+|++..-++-|..+.-
T Consensus 305 ~nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 305 QNPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred cCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 788777777777778888888877777654
No 117
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.30 E-value=0.0009 Score=66.11 Aligned_cols=301 Identities=10% Similarity=0.074 Sum_probs=208.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHhccCCCCcccHHHHH---HHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHH-HHHHh
Q 002975 323 SLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAII---TGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFAS-VLKAC 398 (861)
Q Consensus 323 ~li~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~a~ 398 (861)
-|-..+...|+ +.+|+.-|....+-|...|-++. ..|...|+ ..-|+.=|....+ ++||-..-.. --..+
T Consensus 43 ElGk~lla~~Q---~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGk-sk~al~Dl~rVle--lKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQ---LSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGK-SKAALQDLSRVLE--LKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhh---HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcC-CccchhhHHHHHh--cCccHHHHHHHhchhh
Confidence 45555556555 99999999999998888887765 57888898 8888888888876 5787543321 22355
Q ss_pred cccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHH
Q 002975 399 GNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLH 478 (861)
Q Consensus 399 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 478 (861)
.+.|.++.|.+=|..+++..... +....++.+.-..++-..+ ...+..+...|+...|++...
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~-----~~~~eaqskl~~~~e~~~l------------~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSN-----GLVLEAQSKLALIQEHWVL------------VQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCc-----chhHHHHHHHHhHHHHHHH------------HHHHHHHhcCCchhhHHHHHH
Confidence 78899999999999998875211 2233334433333332222 223445556788888888888
Q ss_pred HHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--CCch
Q 002975 479 EIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED--RNVI 556 (861)
Q Consensus 479 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~ 556 (861)
.+.+- .+.|...|..-..+|...|.+..|..=+..+.+.. ..+....--+-..+-..|+.+.++...++..+ ||..
T Consensus 180 ~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK 257 (504)
T KOG0624|consen 180 HLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK 257 (504)
T ss_pred HHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh
Confidence 87754 24566666677777888888888877666666554 33455555666777788888888888888774 3321
Q ss_pred ----HHHHH---------HHHHHhcCChHHHHHHHHHHHHcCCCCC--hH---HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002975 557 ----SWTSM---------ITGFAKHGFAARALEIFYKMLADGIKPN--GI---TYIAVLSACSHAGLISEGWKHFRSMYD 618 (861)
Q Consensus 557 ----~~~~l---------i~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~ 618 (861)
.|..| +......++|.++++..+..++. .|. .+ .|..+-.++...|.+.+|++...+..
T Consensus 258 ~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL- 334 (504)
T KOG0624|consen 258 LCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL- 334 (504)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHH-
Confidence 22221 23345678899999988888884 444 23 34444556677889999999888776
Q ss_pred hcCCCCC-hhHHHHHHHHhhhcCCHHHHHHHHHhCC
Q 002975 619 EHGIVQR-MEHYACMVDLLGRSGSLTEALEFIRSMP 653 (861)
Q Consensus 619 ~~~~~p~-~~~~~~l~~~~~r~g~~~eA~~~~~~~~ 653 (861)
.+.|+ +.++.--.++|.-...+++|+.-|+++.
T Consensus 335 --~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 335 --DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred --hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 67776 7788888889999999999999999874
No 118
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.28 E-value=4.6e-05 Score=76.61 Aligned_cols=183 Identities=12% Similarity=0.029 Sum_probs=131.1
Q ss_pred CCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHccCCHHHHHHHHHhccC--CC-ch---
Q 002975 486 GTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESN---HCIYNALISMYSRCANVEAAFQVFKEMED--RN-VI--- 556 (861)
Q Consensus 486 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~--- 556 (861)
......+..+...+...|+++.|...++.+++.. +.+ ...+..+...|.+.|++++|...|+++.+ |+ ..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456677888888999999999999999998764 222 24667888999999999999999999874 32 22
Q ss_pred HHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChh
Q 002975 557 SWTSMITGFAKH--------GFAARALEIFYKMLADGIKPNGI-TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRME 627 (861)
Q Consensus 557 ~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 627 (861)
++..+..++.+. |+.++|++.|+++.+ ..|+.. ....+..... .... .. .
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~----~~~~------~~---------~ 167 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDY----LRNR------LA---------G 167 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHH----HHHH------HH---------H
Confidence 456666666654 789999999999998 466643 2222211100 0000 00 1
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCC----CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Q 002975 628 HYACMVDLLGRSGSLTEALEFIRSMP----LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ 690 (861)
Q Consensus 628 ~~~~l~~~~~r~g~~~eA~~~~~~~~----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 690 (861)
....+.+.|.+.|++++|+..+++.. ..| ....|..++.++...|+.++|...++.+....|+
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 12246678899999999999888762 233 3568889999999999999999988888776663
No 119
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=0.00038 Score=67.31 Aligned_cols=181 Identities=12% Similarity=0.082 Sum_probs=99.1
Q ss_pred HHHHccCCHHHHHHHHHhccC-----CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCC
Q 002975 532 SMYSRCANVEAAFQVFKEMED-----RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHAGL 605 (861)
Q Consensus 532 ~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 605 (861)
..+-+.|+.+.|.+.+-.|+. -|++|...+.-.- ..+++.+...-+.-+++. .| -..||..++-.|++..-
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~--nPfP~ETFANlLllyCKNey 325 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ--NPFPPETFANLLLLYCKNEY 325 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc--CCCChHHHHHHHHHHhhhHH
Confidence 456688999999999999983 4778877654322 234455555555555553 44 35799999999999998
Q ss_pred HHHHHHHHHHHHhhcCC-CCChhHHHHHHHHhh-hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHhCCHH----HHH
Q 002975 606 ISEGWKHFRSMYDEHGI-VQRMEHYACMVDLLG-RSGSLTEALEFIRSMPLSADVLVWRTFLGAC-RVHGDTE----LGK 678 (861)
Q Consensus 606 ~~~a~~~~~~m~~~~~~-~p~~~~~~~l~~~~~-r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~-~~~g~~~----~a~ 678 (861)
++-|-.++.+-. .... -.+...|+ +++.+. ..-..++|++-++.....--...-..-+..- .++.+-+ .++
T Consensus 326 f~lAADvLAEn~-~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai 403 (459)
T KOG4340|consen 326 FDLAADVLAENA-HLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAV 403 (459)
T ss_pred HhHHHHHHhhCc-chhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 888887765322 0000 01223333 334443 3446677766555442100000001111111 1222222 233
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 679 HAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 679 ~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
.-+++.+++.- .....-+++|-...++.-+.+.+..-.+
T Consensus 404 ~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 404 NEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 33444444321 1334567788888888888888775543
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.22 E-value=0.00042 Score=72.28 Aligned_cols=121 Identities=20% Similarity=0.157 Sum_probs=85.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHhCC
Q 002975 596 VLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSAD-VLVWRTFLGACRVHGD 673 (861)
Q Consensus 596 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~ 673 (861)
........|.+++|+..++.+... .+-+........+.+.+.|+.++|.+.++++. ..|+ ...|-.+..++.+.|+
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCC
Confidence 333445677788888888777632 22344445556778888888888888887763 5555 5677777788888888
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 674 TELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 674 ~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
..+|+..++....-+|+|+..|..|+..|..+|+-.++...+.++
T Consensus 390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 888888888888888888888888888777777766666665544
No 121
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.20 E-value=6.2e-05 Score=79.63 Aligned_cols=211 Identities=14% Similarity=0.155 Sum_probs=135.4
Q ss_pred CChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCC---CeehHHHHHHHHHhcCChhHHHHHHH
Q 002975 402 LDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEK---NLVSYNTMVDAYAKNLNSEKAFELLH 478 (861)
Q Consensus 402 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~ 478 (861)
|++..|.-.|+..++.. +.+...|.-|...-...++-..|+..+++..+- |....-+|.-.|...|.-.+|+..|+
T Consensus 299 G~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~ 377 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLD 377 (579)
T ss_pred CCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 33444444444444332 333344444444444455555555555555332 33445555556666676677777766
Q ss_pred HHhhcCCC--------CCHHHHHHHHHHhhcccchHHHHHHHHHH-HHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHh
Q 002975 479 EIEDTGVG--------TSAYTFASLLSGASSIGAIGKGEQIHARI-IKSGFESNHCIYNALISMYSRCANVEAAFQVFKE 549 (861)
Q Consensus 479 ~m~~~g~~--------p~~~t~~~ll~a~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 549 (861)
.-.....+ ++..+-.. ........+....++|-.+ ...+..+|+.++..|.-.|--.|+++.|...|+.
T Consensus 378 ~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~ 455 (579)
T KOG1125|consen 378 KWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEA 455 (579)
T ss_pred HHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHH
Confidence 65432110 00000000 1122222334444555444 4455568889999999999999999999999998
Q ss_pred ccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002975 550 MED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGI-TYIAVLSACSHAGLISEGWKHFRSMY 617 (861)
Q Consensus 550 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 617 (861)
... .|...||-|...++...+.++|+..|++.++ ++|+-+ ....|.-+|...|.++||..+|-...
T Consensus 456 AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 456 ALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 873 3678999999999999999999999999999 899844 55568889999999999999886654
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.20 E-value=0.00012 Score=83.59 Aligned_cols=187 Identities=9% Similarity=0.039 Sum_probs=139.2
Q ss_pred HHHHHHHHHhhcccchHHH-HHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhcc------CCCchHHHHHH
Q 002975 490 YTFASLLSGASSIGAIGKG-EQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEME------DRNVISWTSMI 562 (861)
Q Consensus 490 ~t~~~ll~a~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~------~~~~~~~~~li 562 (861)
..+..+=.+.+..|..+++ .+++.++.+ ...+.|.+..+.+-+-+.. -.++..+-.|.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La 93 (694)
T PRK15179 29 TILDLLEAALAEPGESEEAGRELLQQARQ---------------VLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVA 93 (694)
T ss_pred HHHhHHHHHhcCcccchhHHHHHHHHHHH---------------HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHH
Confidence 3333344455666666554 556655532 2233344433333333222 13577888888
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcC
Q 002975 563 TGFAKHGFAARALEIFYKMLADGIKPNGI-TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSG 640 (861)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g 640 (861)
....+.|.+++|..+++...+ +.||.. .+..++..+.+.+.+++|...+++.. ...| +..+...+..++.+.|
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~~~a~~l~~~g 168 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREILLEAKSWDEIG 168 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999 789854 67788899999999999999999887 4455 4566777888999999
Q ss_pred CHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHH
Q 002975 641 SLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHI 696 (861)
Q Consensus 641 ~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 696 (861)
++++|.++|++.. ..| +..+|-++..++...|+.+.|..+|+++++...+....|.
T Consensus 169 ~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 169 QSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred chHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 9999999999984 344 4779999999999999999999999999998877665554
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.20 E-value=0.00037 Score=72.64 Aligned_cols=140 Identities=16% Similarity=0.099 Sum_probs=103.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHhhh
Q 002975 561 MITGFAKHGFAARALEIFYKMLADGIKPNGI-TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR-MEHYACMVDLLGR 638 (861)
Q Consensus 561 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~r 638 (861)
....+...|++++|+..+++++. -.||.. -.......+...++.++|.+.++.+. ...|+ ....-.+..+|.+
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~all~ 386 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHHHHHh
Confidence 33445566778888888888777 456544 34445556777888888888888777 34455 3344456678888
Q ss_pred cCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHH
Q 002975 639 SGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRK 716 (861)
Q Consensus 639 ~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~ 716 (861)
.|+..+|+..++... .+.|+..|..|..+|...|+..++..+ .+..|+-.|+|++|.....
T Consensus 387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLM 449 (484)
T ss_pred cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHH
Confidence 888888888887763 455788999999999999998877654 5677889999999999988
Q ss_pred HHHhCC
Q 002975 717 RMKERN 722 (861)
Q Consensus 717 ~m~~~~ 722 (861)
..+++.
T Consensus 450 ~A~~~~ 455 (484)
T COG4783 450 RASQQV 455 (484)
T ss_pred HHHHhc
Confidence 888754
No 124
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.19 E-value=4.5e-05 Score=68.96 Aligned_cols=94 Identities=18% Similarity=0.215 Sum_probs=75.1
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 002975 627 EHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS 704 (861)
Q Consensus 627 ~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~ 704 (861)
.....+...+...|++++|.+.++... .+.+...|..+...+...|+.+.|...++++++.+|+++..+..++.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 445556666777777777777777652 233567888888888888999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHh
Q 002975 705 AGHWEYVANIRKRMKE 720 (861)
Q Consensus 705 ~g~~~~a~~~~~~m~~ 720 (861)
.|++++|.+.++...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999998887765
No 125
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.16 E-value=6.6e-05 Score=81.47 Aligned_cols=184 Identities=14% Similarity=0.152 Sum_probs=95.3
Q ss_pred CCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 002975 520 FESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSA 599 (861)
Q Consensus 520 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 599 (861)
++|-...-..+.+.+.++|-..+|..+|++. ..|...|.+|...|+..+|..+..+-.+ -+||+..|..+++.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 3444455555666666666666666666654 3455566666666666666666666555 35666666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHH
Q 002975 600 CSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM-PLSA-DVLVWRTFLGACRVHGDTELG 677 (861)
Q Consensus 600 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 677 (861)
.-....+++|+++++..... .-..+.....+.++++++.+.++.. ...| -..+|-.+..+..+.++...|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 65555666666666544321 0001111122344445554444432 2222 233444444444444455555
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 678 KHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 678 ~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
..+|...+.++|++...+..|+-.|.+.|+-.+|....++.
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EA 579 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEA 579 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHH
Confidence 55555555555555555555555555554444444444443
No 126
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.16 E-value=0.00013 Score=69.89 Aligned_cols=134 Identities=16% Similarity=0.128 Sum_probs=103.6
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHH
Q 002975 586 IKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRT 663 (861)
Q Consensus 586 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ 663 (861)
..|+......+-.++...|+-+.+..+...... ....+.......+....+.|++.+|...|++.. .++|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 355432225566677777777777776665432 223344455568888889999999999998873 5678889999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 664 FLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 664 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
+.-+|-+.|+.+.|...+.+++++.|.++.++..|+..|.-.|+.++|..++......
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999988877653
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.14 E-value=0.00038 Score=79.67 Aligned_cols=189 Identities=11% Similarity=0.098 Sum_probs=136.8
Q ss_pred HHHHHHhcCChhHHH-HHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC
Q 002975 460 MVDAYAKNLNSEKAF-ELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCA 538 (861)
Q Consensus 460 li~~~~~~g~~~~A~-~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 538 (861)
+=.+.+.-|..++|- +++.+..+ ++...+.......+..-.....+ ....++..+-.|.......|
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La~i~~~~g 100 (694)
T PRK15179 34 LEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVARALEAAH 100 (694)
T ss_pred HHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHHHHHHHcC
Confidence 334556677777774 44444432 23333333333333322222222 34667889999999999999
Q ss_pred CHHHHHHHHHhccC--CC-chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHH
Q 002975 539 NVEAAFQVFKEMED--RN-VISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGI-TYIAVLSACSHAGLISEGWKHFR 614 (861)
Q Consensus 539 ~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 614 (861)
+.++|..+++...+ || ...+..++..+.+.+++++|+..+++.+. ..|+.. ....+..++.+.|.+++|..+|+
T Consensus 101 ~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~ 178 (694)
T PRK15179 101 RSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQSEQADACFE 178 (694)
T ss_pred CcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 99999999998874 54 56778889999999999999999999999 578754 56677788899999999999999
Q ss_pred HHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHH
Q 002975 615 SMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFL 665 (861)
Q Consensus 615 ~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll 665 (861)
++.. ...-+...+..+..++-..|+.++|...|++.- ..|.+.-|+.++
T Consensus 179 ~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 179 RLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 9984 233346788888999999999999999999873 444444444443
No 128
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.13 E-value=0.00027 Score=67.74 Aligned_cols=153 Identities=13% Similarity=0.084 Sum_probs=102.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHhcc---CCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Q 002975 528 NALISMYSRCANVEAAFQVFKEME---DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAG 604 (861)
Q Consensus 528 ~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 604 (861)
..+-..|.-.|+-+.+..+..... ..|....+..+....+.|++.+|+..|++..... ++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 445566666777777777766644 2344455667888888888888888888888732 446778888888888888
Q ss_pred CHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHHhCCHHHHHHHHH
Q 002975 605 LISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPL-SA-DVLVWRTFLGACRVHGDTELGKHAAE 682 (861)
Q Consensus 605 ~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 682 (861)
+.++|..-|.+..+-.+-.| ..++.|.-.|.-.|+++.|..++..... .+ |..+-..|.-+-...|+.+.|+.+..
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p--~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAPNEP--SIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhccCCc--hhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 88888888887774333322 3455566666666777777776666532 22 55566666666666677776666554
Q ss_pred H
Q 002975 683 M 683 (861)
Q Consensus 683 ~ 683 (861)
+
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 4
No 129
>PLN02789 farnesyltranstransferase
Probab=98.10 E-value=0.0016 Score=67.56 Aligned_cols=222 Identities=12% Similarity=0.105 Sum_probs=135.9
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCCCCCHH-HHHHHHHHhhccc-chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC
Q 002975 461 VDAYAKNLNSEKAFELLHEIEDTGVGTSAY-TFASLLSGASSIG-AIGKGEQIHARIIKSGFESNHCIYNALISMYSRCA 538 (861)
Q Consensus 461 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 538 (861)
-..+...++.++|+.+..++... .|+.. .|..--..+...+ .++++...++.+++.+ +.+..+|+....++.+.|
T Consensus 44 ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcC
Confidence 33445567778888888887754 34433 3444444445555 5678888888887765 445556666555556666
Q ss_pred CH--HHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc---CC----H
Q 002975 539 NV--EAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHA---GL----I 606 (861)
Q Consensus 539 ~~--~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~---g~----~ 606 (861)
+. +++..+++.+.+ +|..+|+.....+...|+++++++.++++++.+.. |...|+.....+.+. |. .
T Consensus 121 ~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 121 PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccH
Confidence 53 567777776663 56678888888888888888899988888885422 344555554444443 22 2
Q ss_pred HHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhc----CCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhC-------
Q 002975 607 SEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRS----GSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHG------- 672 (861)
Q Consensus 607 ~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~----g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g------- 672 (861)
++...+...++. +.| +...|+.+..+|... ++..+|.+++.+.. ..| ++.....|+..+....
T Consensus 200 e~el~y~~~aI~---~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~ 276 (320)
T PLN02789 200 DSELKYTIDAIL---ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFR 276 (320)
T ss_pred HHHHHHHHHHHH---hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhh
Confidence 456666655552 234 445566666666552 34566777777652 333 4556666777765422
Q ss_pred -----------CHHHHHHHHHHHhccCC
Q 002975 673 -----------DTELGKHAAEMILEQDP 689 (861)
Q Consensus 673 -----------~~~~a~~~~~~~~~~~p 689 (861)
..+.|..+++.+-+.+|
T Consensus 277 ~~~~~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 277 DTVDTLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred hhhhccccccccHHHHHHHHHHHHhhCc
Confidence 23556666666655555
No 130
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.09 E-value=0.0004 Score=66.92 Aligned_cols=154 Identities=14% Similarity=0.156 Sum_probs=101.0
Q ss_pred HHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHH
Q 002975 532 SMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGW 610 (861)
Q Consensus 532 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~ 610 (861)
-.|.+.|+++......+.+..+. ..|...++.++++..+++.++. .| |...|..+...+...|++++|.
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45666666655544433322221 0112255566777777776663 34 4556777777777777777777
Q ss_pred HHHHHHHhhcCCCC-ChhHHHHHHHH-hhhcCC--HHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002975 611 KHFRSMYDEHGIVQ-RMEHYACMVDL-LGRSGS--LTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMI 684 (861)
Q Consensus 611 ~~~~~m~~~~~~~p-~~~~~~~l~~~-~~r~g~--~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 684 (861)
..|++.. .+.| +...+..+..+ +.+.|+ .++|.+++++.. ..| +..++..|...+...|++++|+..++++
T Consensus 94 ~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777766 3334 44556666664 356666 477888877763 344 5678888888999999999999999999
Q ss_pred hccCCCCCchHHHH
Q 002975 685 LEQDPQDPAAHILL 698 (861)
Q Consensus 685 ~~~~p~~~~~~~~L 698 (861)
++++|.+..-+..+
T Consensus 171 L~l~~~~~~r~~~i 184 (198)
T PRK10370 171 LDLNSPRVNRTQLV 184 (198)
T ss_pred HhhCCCCccHHHHH
Confidence 99999877665544
No 131
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.07 E-value=6.3e-06 Score=54.06 Aligned_cols=35 Identities=31% Similarity=0.642 Sum_probs=33.0
Q ss_pred eeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 002975 146 VSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNE 180 (861)
Q Consensus 146 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 180 (861)
++||+||.+|++.|++++|.++|.+|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 132
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.07 E-value=5.8e-06 Score=54.27 Aligned_cols=35 Identities=29% Similarity=0.494 Sum_probs=32.9
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc
Q 002975 249 VGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDR 283 (861)
Q Consensus 249 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 283 (861)
++||++|.+|++.|++++|.++|.+|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 133
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.07 E-value=0.00065 Score=78.97 Aligned_cols=196 Identities=13% Similarity=0.176 Sum_probs=128.6
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHh-CCCC---chhHHHHHHHHHHccCCHHHHHHHHHhccCC-C-chHHHHHH
Q 002975 489 AYTFASLLSGASSIGAIGKGEQIHARIIKS-GFES---NHCIYNALISMYSRCANVEAAFQVFKEMEDR-N-VISWTSMI 562 (861)
Q Consensus 489 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~-~~~~~~li 562 (861)
...|...+.-..+.+++++|+++.+++++. ++.- -..+|.+++++-..-|.-+...++|++..+- | ...|..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 345555566666677777777777666553 2211 2345666666666666667777777777642 2 34566777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCh---hHHHHHHHHhhhc
Q 002975 563 TGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRM---EHYACMVDLLGRS 639 (861)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~---~~~~~l~~~~~r~ 639 (861)
..|.+.+.+++|.++|++|.+. ..-....|...+..+.+...-++|..++.+..+ .-|.. +.....+.+-.+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~---~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALK---SLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh---hcchhhhHHHHHHHHHHHhhc
Confidence 7777777778888888777775 233445677777777777777777777777662 23433 3344455666777
Q ss_pred CCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Q 002975 640 GSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQD 688 (861)
Q Consensus 640 g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 688 (861)
|+-+.+..+|+... ..| ....|+.++..-.+||+.+....+|++++++.
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 88787777777653 222 45678888888888888888888888877653
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.98 E-value=0.00072 Score=78.10 Aligned_cols=214 Identities=10% Similarity=0.090 Sum_probs=142.1
Q ss_pred CCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHH-HHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHH
Q 002975 452 KNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASL-LSGASSIGAIGKGEQIHARIIKSGFESNHCIYNAL 530 (861)
Q Consensus 452 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 530 (861)
.+...|..|+..|...+++++|.++.++..+. .|+...+..+ ...+.+.++...+..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 35567899999999999999999999966643 5555433322 2244455554444333 23
Q ss_pred HHHHHccCCHHHHHHHHHhccC--CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHH
Q 002975 531 ISMYSRCANVEAAFQVFKEMED--RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLIS 607 (861)
Q Consensus 531 i~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 607 (861)
++...+..++.-..-+.+.|.+ .+..++-.+..+|-+.|+.++|...|+++++. .|+ ....+.+...++.. +++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--D~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--DRDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHh-hHH
Confidence 3333333334333333333332 23346677888888899999999999999884 454 56778888888888 889
Q ss_pred HHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC---------------------CHHHHHHHH
Q 002975 608 EGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA---------------------DVLVWRTFL 665 (861)
Q Consensus 608 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p---------------------~~~~~~~ll 665 (861)
+|.+++...... |...+++.++.+++.++. ..| -+.+|.-|-
T Consensus 167 KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 167 KAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred HHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 998888777632 333345555555544441 122 233444445
Q ss_pred HHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 002975 666 GACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYA 703 (861)
Q Consensus 666 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~ 703 (861)
.-|+..++++.+..+++.+++.+|.|..+..-|+..|.
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 66788889999999999999999999999888888877
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.96 E-value=0.00011 Score=77.52 Aligned_cols=120 Identities=13% Similarity=0.062 Sum_probs=87.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhC
Q 002975 595 AVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHG 672 (861)
Q Consensus 595 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g 672 (861)
+++..+...+++++|..+|+++.+. .|+ ....++..+...++-.+|.+++++.- .+.+...+......|...+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 3445555556666666666666522 233 23335555555666666666666652 2335666666777788999
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 002975 673 DTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMK 719 (861)
Q Consensus 673 ~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~ 719 (861)
+.+.|..+++++.++.|++..+|..|+.+|...|+|++|.-..+.+.
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999888664
No 136
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.0041 Score=59.79 Aligned_cols=155 Identities=15% Similarity=0.089 Sum_probs=92.9
Q ss_pred HHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHH
Q 002975 529 ALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISE 608 (861)
Q Consensus 529 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 608 (861)
.-...|++.|++++|++.......-+....| ...+.+..+.+-|.+.+++|.+- -+..|.+.|..++.
T Consensus 113 ~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv------- 180 (299)
T KOG3081|consen 113 LAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWV------- 180 (299)
T ss_pred HhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHH-------
Confidence 3344566666666666666653222222222 22334445556666666666552 13344444444432
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 002975 609 GWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILE 686 (861)
Q Consensus 609 a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 686 (861)
....-.+++.+|.-+|++|. ..|++.+.+..+.+|...|++++|+..++.++.
T Consensus 181 -------------------------~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 181 -------------------------KLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred -------------------------HHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 22233344555666666653 456677777777778888888888888888888
Q ss_pred cCCCCCchHHHHHHHHHHcCChhHHHH-HHHHHHh
Q 002975 687 QDPQDPAAHILLSNLYASAGHWEYVAN-IRKRMKE 720 (861)
Q Consensus 687 ~~p~~~~~~~~L~~~y~~~g~~~~a~~-~~~~m~~ 720 (861)
.+++++.+...+.-.--..|+..++.+ ....++.
T Consensus 236 kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 236 KDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred ccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 888888888877777777888777643 3444443
No 137
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.91 E-value=1.6e-05 Score=51.65 Aligned_cols=34 Identities=24% Similarity=0.504 Sum_probs=31.9
Q ss_pred ceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 002975 145 IVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCP 178 (861)
Q Consensus 145 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 178 (861)
+.+||++|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999987
No 138
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.89 E-value=1.8e-05 Score=51.43 Aligned_cols=34 Identities=26% Similarity=0.551 Sum_probs=31.3
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC
Q 002975 248 TVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLP 281 (861)
Q Consensus 248 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 281 (861)
+.+||++|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999887
No 139
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.0009 Score=68.01 Aligned_cols=160 Identities=10% Similarity=-0.030 Sum_probs=115.5
Q ss_pred hHHHHHH-HHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhH-----
Q 002975 556 ISWTSMI-TGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEH----- 628 (861)
Q Consensus 556 ~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~----- 628 (861)
.+|..+- .++...|++++|.+.--..++. .++ ......-..++...++.+.|...|++.. .+.|+...
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~ 243 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKL--DATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSAS 243 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhc--ccchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHh
Confidence 3444432 4556778888888777666663 332 2222222334455677888888887765 44454321
Q ss_pred --------HHHHHHHhhhcCCHHHHHHHHHhCC------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCch
Q 002975 629 --------YACMVDLLGRSGSLTEALEFIRSMP------LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAA 694 (861)
Q Consensus 629 --------~~~l~~~~~r~g~~~eA~~~~~~~~------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 694 (861)
+..-.+...+.|++.+|.+.+.+.. .+|++..|.....+....|+.++|+.-.+++++++|.-..+
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika 323 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA 323 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence 1122345678999999999998863 34456677777778889999999999999999999999999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 695 HILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 695 ~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
|..-+++|...++|++|.+-++...+
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999987765
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.82 E-value=0.0005 Score=62.11 Aligned_cols=115 Identities=12% Similarity=0.069 Sum_probs=85.0
Q ss_pred HHHHHHHcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--
Q 002975 577 IFYKMLADGIKPNG-ITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-- 653 (861)
Q Consensus 577 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-- 653 (861)
.|++.++ ..|+. .....+...+...|++++|.+.|+.+.+.. +.+...+..+...+.+.|++++|...+++..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 45543 345566677778888888888888776322 2355667777888888888888888887762
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchH
Q 002975 654 LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAH 695 (861)
Q Consensus 654 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 695 (861)
.+.+...|..+...+...|+.+.|...++++++++|++....
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 334567888888889999999999999999999999886643
No 141
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.0031 Score=60.07 Aligned_cols=168 Identities=15% Similarity=0.198 Sum_probs=117.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHH---HHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 002975 526 IYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMI---TGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSH 602 (861)
Q Consensus 526 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 602 (861)
+|..++-+...+|+.+.|...++.+.+.-+-++.... .-+--.|++++|+++++.+++.. +.|.+++.-=+...-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 3444555556677778888777776643222222211 12345688899999999988865 4456677666666666
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhC---CHHHH
Q 002975 603 AGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHG---DTELG 677 (861)
Q Consensus 603 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g---~~~~a 677 (861)
.|+--+|++-+..-.+. +.-|.+.|.-+.++|...|+++.|.-.++++. ..| ++..+..|...+...| |.+.+
T Consensus 133 ~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 77777888777776643 45677888888899999999999988888874 444 5666677777766555 78899
Q ss_pred HHHHHHHhccCCCCCchHH
Q 002975 678 KHAAEMILEQDPQDPAAHI 696 (861)
Q Consensus 678 ~~~~~~~~~~~p~~~~~~~ 696 (861)
...++++++++|.+...+.
T Consensus 211 rkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 211 RKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHHhChHhHHHHH
Confidence 9999999999997654443
No 142
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.79 E-value=0.00021 Score=69.84 Aligned_cols=101 Identities=19% Similarity=0.187 Sum_probs=70.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCH
Q 002975 564 GFAKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSL 642 (861)
Q Consensus 564 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~ 642 (861)
-+.+.+++.+|+..|.+.++ +.| |.+-|..-..+|++.|.++.|++-.+..+ .
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~--------------------- 143 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---S--------------------- 143 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---h---------------------
Confidence 34566777777777777777 555 45666667777777777777776555444 2
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 002975 643 TEALEFIRSMPLSAD-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNL 701 (861)
Q Consensus 643 ~eA~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 701 (861)
..|. ...|..|..++...|++++|+++|+++++++|+|......|..+
T Consensus 144 -----------iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 144 -----------IDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred -----------cChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 2332 34777788888888888888888888888888887555555443
No 143
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.0032 Score=60.00 Aligned_cols=160 Identities=14% Similarity=0.131 Sum_probs=121.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHH-HHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 002975 557 SWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIA-VLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDL 635 (861)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 635 (861)
.|..++-+....|+.+.|...++++...- |.+.-... -..-+...|.+++|.++++.+.++. +-+...|--=+-+
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHH
Confidence 34455666778899999999999998853 55332111 1122456899999999999998543 3355666666667
Q ss_pred hhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhH---
Q 002975 636 LGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEY--- 710 (861)
Q Consensus 636 ~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~--- 710 (861)
+-.+|+--+|++-+.+.. +..|...|.-|...|...|+++.|.-.+|+++-+.|.++..+..|+.++...|--+.
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 777888888888776653 667999999999999999999999999999999999999999999999988876443
Q ss_pred HHHHHHHHHh
Q 002975 711 VANIRKRMKE 720 (861)
Q Consensus 711 a~~~~~~m~~ 720 (861)
+.+.+....+
T Consensus 210 arkyy~~alk 219 (289)
T KOG3060|consen 210 ARKYYERALK 219 (289)
T ss_pred HHHHHHHHHH
Confidence 4445544433
No 144
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.78 E-value=0.0083 Score=69.66 Aligned_cols=89 Identities=18% Similarity=0.228 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHh
Q 002975 488 SAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAK 567 (861)
Q Consensus 488 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 567 (861)
+...+..+..+|.+.|+.+++..+++++++.. +.|+.+.|.+...|+.. ++++|.+++.+.. ..|..
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV-----------~~~i~ 181 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI-----------YRFIK 181 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH-----------HHHHh
Confidence 33466667777777788888888888777776 66777888888888877 8888888777643 23666
Q ss_pred cCChHHHHHHHHHHHHcCCCCChH
Q 002975 568 HGFAARALEIFYKMLADGIKPNGI 591 (861)
Q Consensus 568 ~g~~~~A~~~~~~m~~~g~~p~~~ 591 (861)
.+++.++.++|.++.. ..|+.+
T Consensus 182 ~kq~~~~~e~W~k~~~--~~~~d~ 203 (906)
T PRK14720 182 KKQYVGIEEIWSKLVH--YNSDDF 203 (906)
T ss_pred hhcchHHHHHHHHHHh--cCcccc
Confidence 6677777777777777 455543
No 145
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.78 E-value=0.00028 Score=74.98 Aligned_cols=85 Identities=11% Similarity=0.034 Sum_probs=49.2
Q ss_pred hhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHH
Q 002975 636 LGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVAN 713 (861)
Q Consensus 636 ~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~ 713 (861)
+...|++++|++.++++. ..| +...|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|++++|.+
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 344555555555555542 222 344555555556666666666666666666666666666666666666666666666
Q ss_pred HHHHHHh
Q 002975 714 IRKRMKE 720 (861)
Q Consensus 714 ~~~~m~~ 720 (861)
.++...+
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 6655543
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.77 E-value=0.00083 Score=71.05 Aligned_cols=125 Identities=10% Similarity=0.135 Sum_probs=93.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcC
Q 002975 526 IYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHAG 604 (861)
Q Consensus 526 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g 604 (861)
.-.+|+..+...++++.|..+|+++.+.++..+..|+..+...++-.+|++++++.++. .| |......-...|...+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 33455666667788888888888888777666667778888888888888888888863 44 3445555555677888
Q ss_pred CHHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHhhhcCCHHHHHHHHHhCCCC
Q 002975 605 LISEGWKHFRSMYDEHGIVQR-MEHYACMVDLLGRSGSLTEALEFIRSMPLS 655 (861)
Q Consensus 605 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~ 655 (861)
+++.|..+.+++. .+.|+ ..+|..|+..|.+.|++++|+-.++.+|..
T Consensus 249 ~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 249 KYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 8888888888877 45564 457888888888888888888888888743
No 147
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.72 E-value=8.8e-05 Score=57.75 Aligned_cols=64 Identities=20% Similarity=0.214 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC-ChhHHHHHHHHHHh
Q 002975 657 DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAG-HWEYVANIRKRMKE 720 (861)
Q Consensus 657 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g-~~~~a~~~~~~m~~ 720 (861)
++.+|..++..+...|+++.|+..++++++++|+++.++..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999 79999999887654
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.70 E-value=0.0011 Score=60.57 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002975 557 SWTSMITGFAKHGFAARALEIFYKMLADGIKPNG----ITYIAVLSACSHAGLISEGWKHFRSMY 617 (861)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~ 617 (861)
.|..++..+ ..++...+...++++.+.. |+. .....+...+...|++++|...|+...
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~ 75 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKAL 75 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444 2555555555555555532 221 122333444555555555555555555
No 149
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.70 E-value=4.5e-05 Score=48.28 Aligned_cols=31 Identities=39% Similarity=0.653 Sum_probs=27.8
Q ss_pred eeHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 002975 146 VSWSSMISSYVNRGKQVDAIHMFVEMLELGF 176 (861)
Q Consensus 146 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 176 (861)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5799999999999999999999999998774
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.70 E-value=0.00033 Score=58.28 Aligned_cols=92 Identities=23% Similarity=0.241 Sum_probs=73.6
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC
Q 002975 629 YACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAG 706 (861)
Q Consensus 629 ~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g 706 (861)
+..+...+.+.|++++|.+.++++. ..| +..+|..+...+...|+.+.|...++++++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4445667777888888888887753 333 44677778888888899999999999999999998888999999999999
Q ss_pred ChhHHHHHHHHHHh
Q 002975 707 HWEYVANIRKRMKE 720 (861)
Q Consensus 707 ~~~~a~~~~~~m~~ 720 (861)
++++|.+.++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999888876654
No 151
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.68 E-value=5.2e-05 Score=61.71 Aligned_cols=78 Identities=18% Similarity=0.300 Sum_probs=58.2
Q ss_pred cCCHHHHHHHHHhCC-CCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHH
Q 002975 639 SGSLTEALEFIRSMP-LSA---DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANI 714 (861)
Q Consensus 639 ~g~~~eA~~~~~~~~-~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~ 714 (861)
.|++++|+.+++++. ..| +...|-.+..++...|+++.|..++++ .+.+|.+......++.+|.+.|+|++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 456666666666652 122 455666678888888888888888888 778888878888889999999999999988
Q ss_pred HHH
Q 002975 715 RKR 717 (861)
Q Consensus 715 ~~~ 717 (861)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 152
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.65 E-value=5.5e-05 Score=47.85 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=27.9
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHHCCC
Q 002975 249 VGWTLMITRCTQLGCPRDAIRLFLDMILSGF 279 (861)
Q Consensus 249 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 279 (861)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5799999999999999999999999998774
No 153
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.64 E-value=0.0026 Score=58.10 Aligned_cols=51 Identities=16% Similarity=0.159 Sum_probs=22.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHHhcCCHHHHHHHH
Q 002975 563 TGFAKHGFAARALEIFYKMLADGIKPN--GITYIAVLSACSHAGLISEGWKHF 613 (861)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~ 613 (861)
..+...|++++|...|++.......|+ ......+...+...|++++|+..+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L 108 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATL 108 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 444455555555555555555331111 112223344444444444444444
No 154
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.62 E-value=0.00032 Score=68.66 Aligned_cols=88 Identities=20% Similarity=0.183 Sum_probs=76.7
Q ss_pred HHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhH
Q 002975 633 VDLLGRSGSLTEALEFIRSM-PLSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEY 710 (861)
Q Consensus 633 ~~~~~r~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~ 710 (861)
.+-+.+.+++++|+..+.++ .+.| |++.|..-..+|.+.|.++.|++.++.++.++|....+|..|+-+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 34556778888888888876 3454 677778888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 002975 711 VANIRKRMKE 720 (861)
Q Consensus 711 a~~~~~~m~~ 720 (861)
|.+.+++..+
T Consensus 168 A~~aykKaLe 177 (304)
T KOG0553|consen 168 AIEAYKKALE 177 (304)
T ss_pred HHHHHHhhhc
Confidence 9999987765
No 155
>PRK15331 chaperone protein SicA; Provisional
Probab=97.61 E-value=0.0013 Score=59.04 Aligned_cols=88 Identities=10% Similarity=-0.029 Sum_probs=76.0
Q ss_pred HHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhH
Q 002975 633 VDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEY 710 (861)
Q Consensus 633 ~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~ 710 (861)
..-+..+|++++|..+|+-+. ..-+..-|..|...|...++++.|+..+..+..++++|+.++...+.+|...|+.+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 334557888888888887653 333667888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 002975 711 VANIRKRMKE 720 (861)
Q Consensus 711 a~~~~~~m~~ 720 (861)
|...+....+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999997765
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.58 E-value=0.00091 Score=58.71 Aligned_cols=89 Identities=13% Similarity=0.108 Sum_probs=43.5
Q ss_pred HHHHhhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC---CchHHHHHHHHH
Q 002975 632 MVDLLGRSGSLTEALEFIRSMP-LSAD----VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD---PAAHILLSNLYA 703 (861)
Q Consensus 632 l~~~~~r~g~~~eA~~~~~~~~-~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~L~~~y~ 703 (861)
.+..+.+.|++++|.+.++++. ..|+ ...+..+..++...|+++.|...++.+++..|++ +..+..++.+|.
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 3344444444444444444431 1111 2233344555555555555555555555555543 234555555555
Q ss_pred HcCChhHHHHHHHHHHh
Q 002975 704 SAGHWEYVANIRKRMKE 720 (861)
Q Consensus 704 ~~g~~~~a~~~~~~m~~ 720 (861)
..|++++|.+.++.+.+
T Consensus 88 ~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 88 ELGDKEKAKATLQQVIK 104 (119)
T ss_pred HhCChHHHHHHHHHHHH
Confidence 55555555555555544
No 157
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.56 E-value=0.00021 Score=54.79 Aligned_cols=57 Identities=28% Similarity=0.367 Sum_probs=47.9
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 664 FLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 664 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+...+...|+++.|+..++++++.+|+++.++..++.++...|++++|...++.+.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456678888899999999999999999999999999999999999999888887754
No 158
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.56 E-value=0.0028 Score=70.44 Aligned_cols=43 Identities=9% Similarity=0.040 Sum_probs=26.7
Q ss_pred CCCchHHHHHHHHHHh--c---CChHHHHHHHHHHHHcCCCCCh-HHHHHH
Q 002975 552 DRNVISWTSMITGFAK--H---GFAARALEIFYKMLADGIKPNG-ITYIAV 596 (861)
Q Consensus 552 ~~~~~~~~~li~~~~~--~---g~~~~A~~~~~~m~~~g~~p~~-~t~~~l 596 (861)
..|...|...+.+... . +...+|+.+|++.++ ..||- ..+..+
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~l 382 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEK 382 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 3456666666665432 2 236688888999888 67873 344443
No 159
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.54 E-value=0.098 Score=54.25 Aligned_cols=124 Identities=19% Similarity=0.143 Sum_probs=91.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Q 002975 527 YNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLI 606 (861)
Q Consensus 527 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 606 (861)
.+..|.-+...|+...|.++..+..-||-.-|-..+.+|+..|+|++-..+... +-.++-|..++.+|...|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455667789999999999988889999999999999999999886664322 22357888899999999999
Q ss_pred HHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 002975 607 SEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRV 670 (861)
Q Consensus 607 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~ 670 (861)
.+|..+...+. +..-+.+|.++|++.+|.+.--+.. |...+..+..-|..
T Consensus 254 ~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~~~ 303 (319)
T PF04840_consen 254 KEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRCPG 303 (319)
T ss_pred HHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHCCC
Confidence 99998886632 2456788999999999987755432 44444444444433
No 160
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.014 Score=56.18 Aligned_cols=137 Identities=12% Similarity=0.049 Sum_probs=82.9
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCC-c
Q 002975 477 LHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRN-V 555 (861)
Q Consensus 477 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-~ 555 (861)
.+.+.......+......-...|...++.++|........ +......=+..+.|..+++-|.+.++.|.+-| -
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided 169 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDED 169 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH
Confidence 3333333344443444444455666666666666554411 11222222344566677788888888887643 3
Q ss_pred hHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 002975 556 ISWTSMITGFAK----HGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEH 620 (861)
Q Consensus 556 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 620 (861)
.+.+.|..++.+ .+...+|.-+|++|-+. ..|+..+.+....+|...|++++|..+++....+.
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 455556555543 34577788888887664 57777777777777888888888888877776443
No 161
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.53 E-value=0.18 Score=53.76 Aligned_cols=208 Identities=15% Similarity=0.140 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC---CHHHHHHHHHhccC---C-CchHHHHHHHHHHhcCChHHHHHHH
Q 002975 506 GKGEQIHARIIKSGFESNHCIYNALISMYSRCA---NVEAAFQVFKEMED---R-NVISWTSMITGFAKHGFAARALEIF 578 (861)
Q Consensus 506 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~ 578 (861)
+++..+++..+..-...+..+|..+.+-=-..- ..+.....+++... . -..+|-..++.-.+..-...|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 344555555544332334444444332111111 23444445554442 2 2346777888777777789999999
Q ss_pred HHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC---C
Q 002975 579 YKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP---L 654 (861)
Q Consensus 579 ~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~---~ 654 (861)
.+..+.+..+ +.....+++.-++ .++.+-|.++|+.=.+++|-.| .--.+.++-+.+-|+-..|..+|++.. .
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999998888 4556667776555 5788999999988776665544 334567889999999999999999873 2
Q ss_pred CCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC----chHHHHHHHHHHcCChhHHHHHHH
Q 002975 655 SAD--VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDP----AAHILLSNLYASAGHWEYVANIRK 716 (861)
Q Consensus 655 ~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~L~~~y~~~g~~~~a~~~~~ 716 (861)
.|| ..+|..++.--..-||++....+-++.....|.+- ..-.++.+-|.=.+.+..-..-++
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk 534 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELK 534 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHH
Confidence 343 46999999999999999999999888887666221 122344555666666554444333
No 162
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.22 Score=55.28 Aligned_cols=342 Identities=14% Similarity=0.048 Sum_probs=186.2
Q ss_pred HCCCCCCcccHH-----HHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCC-
Q 002975 276 LSGFLPDRFTLS-----GVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLD- 349 (861)
Q Consensus 276 ~~g~~pd~~t~~-----~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~- 349 (861)
.-|+..+..-|. .+++-+...+.+..|.++-..+-..-... ..++.....-+.+..+...-+.+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 345555544443 34555556667777777766553221122 46666777777765442234445555555555
Q ss_pred -CCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCC----CChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcc
Q 002975 350 -HNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVA----PNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDC 424 (861)
Q Consensus 350 -~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~----p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 424 (861)
...++|..+.+--.+.|+ .+-|..+++.=...+.. .+..-+...+.-+...|+.+...+++-++...-
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR-~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~------ 576 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGR-FELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL------ 576 (829)
T ss_pred CCCceeHHHHHHHHHhcCc-HHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH------
Confidence 466788888887778887 88777776542222111 133344555666667777777766666654431
Q ss_pred hhhHHHHHHHHcCCHHHHHHHHHhcCC-CCeehHHHHHHHHHhcCChhHHHHHHHHHh------hcCCCCCHHHHHHHHH
Q 002975 425 VGNSLISMYARSGRMEDARKAFESLFE-KNLVSYNTMVDAYAKNLNSEKAFELLHEIE------DTGVGTSAYTFASLLS 497 (861)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~------~~g~~p~~~t~~~ll~ 497 (861)
..-+.+.-..+...|..+|....+ .|..+ +-+.|- .++-.+++..|..-. ..|..|+. .....
T Consensus 577 ---~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~---l~d~y~-q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~ 646 (829)
T KOG2280|consen 577 ---NRSSLFMTLRNQPLALSLYRQFMRHQDRAT---LYDFYN-QDDNHQALASFHLQASYAAETIEGRIPAL---KTAAN 646 (829)
T ss_pred ---HHHHHHHHHHhchhhhHHHHHHHHhhchhh---hhhhhh-cccchhhhhhhhhhhhhhhhhhcccchhH---HHHHH
Confidence 001111112223334444443322 11111 111122 222222222221100 11223333 33344
Q ss_pred HhhcccchHH---HHH-------HHHHHH-HhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHH
Q 002975 498 GASSIGAIGK---GEQ-------IHARII-KSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFA 566 (861)
Q Consensus 498 a~~~~~~~~~---a~~-------~~~~~~-~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 566 (861)
+|++...... +.+ +...+. +.|.....-+.+--+.-+...|+..+|.++-.+..-||-..|-.-+.+++
T Consensus 647 ~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa 726 (829)
T KOG2280|consen 647 AFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALA 726 (829)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 4444333111 111 111111 12322222333444455667899999999999988888888888889999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHH
Q 002975 567 KHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEAL 646 (861)
Q Consensus 567 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~ 646 (861)
..+++++-.++-+.+. .++-|.-...+|.+.|+.+||.+++-+.. |.. -.+.+|.+.|++.+|.
T Consensus 727 ~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAa 790 (829)
T KOG2280|consen 727 DIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAA 790 (829)
T ss_pred hhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHH
Confidence 9999988666544432 14566668889999999999999886553 221 4678899999999998
Q ss_pred HHHHh
Q 002975 647 EFIRS 651 (861)
Q Consensus 647 ~~~~~ 651 (861)
++--+
T Consensus 791 d~A~~ 795 (829)
T KOG2280|consen 791 DLAAE 795 (829)
T ss_pred HHHHH
Confidence 76543
No 163
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.51 E-value=0.0014 Score=57.40 Aligned_cols=102 Identities=12% Similarity=0.064 Sum_probs=57.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHH
Q 002975 594 IAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMP-LSAD----VLVWRTFLGA 667 (861)
Q Consensus 594 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~----~~~~~~ll~~ 667 (861)
..+...+...|++++|...|+.+.....-.+ ....+..+..++.+.|++++|.+.++.+. ..|+ ..+|..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3344444445555555555555442221111 12233334555555555555555555442 1222 4566777777
Q ss_pred HHHhCCHHHHHHHHHHHhccCCCCCchH
Q 002975 668 CRVHGDTELGKHAAEMILEQDPQDPAAH 695 (861)
Q Consensus 668 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 695 (861)
+...|+.+.|...++++++..|+++...
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 8888888888888888888888876544
No 164
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.45 E-value=7.9e-05 Score=47.93 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=30.9
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHcCChhHHH
Q 002975 680 AAEMILEQDPQDPAAHILLSNLYASAGHWEYVA 712 (861)
Q Consensus 680 ~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~ 712 (861)
+++++++++|+|+.+|..|+.+|...|++++|.
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 368999999999999999999999999999985
No 165
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.44 E-value=0.00034 Score=54.18 Aligned_cols=52 Identities=23% Similarity=0.475 Sum_probs=42.6
Q ss_pred HHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 669 RVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 669 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
...|+++.|+..++++++.+|++...+..|+.+|.+.|++++|.++++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3568888888888888888888888888888888888888888888876654
No 166
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.43 E-value=0.36 Score=54.83 Aligned_cols=134 Identities=15% Similarity=0.172 Sum_probs=98.0
Q ss_pred HHhcCCcchhHHHHHHHHHcCCCCCcchHHHHHHHH--hcCCChHHHHHHHHhcCC--CCCceeHHHHHHHHHhcCChhH
Q 002975 88 CIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLY--SKCGDLNEANKIFKSMGN--KRDIVSWSSMISSYVNRGKQVD 163 (861)
Q Consensus 88 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~ 163 (861)
....+++..|.+....+.+..+. ..|...+.++ .+.|+.++|..+++.... ..|..|...+-..|.+.|+.++
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn---~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPN---ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhH
Confidence 34567888898888888776543 3445555554 478999999999988722 2477888999999999999999
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhhhhhhhhhhhccCCCCchhHHHHHHHHhhh
Q 002975 164 AIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVK 228 (861)
Q Consensus 164 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~ 228 (861)
|..+|++... ..|+..-...+..++.+.+++..-.++-=++-+. ++...+.+-+.++.+..
T Consensus 96 ~~~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 96 AVHLYERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHH
Confidence 9999999875 4677777778888888887776655554444443 56667776666666665
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.43 E-value=0.0039 Score=58.87 Aligned_cols=130 Identities=12% Similarity=0.075 Sum_probs=87.9
Q ss_pred CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHH
Q 002975 554 NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN--GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYA 630 (861)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~ 630 (861)
....+..+...+...|++++|+..|++..+....+. ...+..+...+.+.|++++|..++++..+ +.| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 345677777788888889999998888887433332 34677788888888888888888888773 233 344555
Q ss_pred HHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCC
Q 002975 631 CMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGH 707 (861)
Q Consensus 631 ~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~ 707 (861)
.+..+|...|+...+..-++.. ...++.|...++++++++|++ |..+...+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 5666777766665555333221 123677889999999999987 5555555555544
No 168
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.41 E-value=0.19 Score=51.26 Aligned_cols=281 Identities=15% Similarity=0.146 Sum_probs=175.7
Q ss_pred cCCHHHHHHHHHhc---CCCCeehHHHHHHH--HHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHH
Q 002975 436 SGRMEDARKAFESL---FEKNLVSYNTMVDA--YAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQ 510 (861)
Q Consensus 436 ~g~~~~A~~~~~~~---~~~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 510 (861)
.|+-..|.+.-.+. ...|....-.++.+ -.-.|+++.|.+-|+.|... ...-..-+..|.-...+.|+.+.|.+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~ 175 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARH 175 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHH
Confidence 45555555555443 22343333333333 23468888888888888742 01111123334444467788888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhcc-----CCCch--HHHHHHHHHH---hcCChHHHHHHHHH
Q 002975 511 IHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEME-----DRNVI--SWTSMITGFA---KHGFAARALEIFYK 580 (861)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~---~~g~~~~A~~~~~~ 580 (861)
+-+..-..- +.-.-.+.++++..+..|+++.|+++.+.-. ++|+. .--.|+.+-+ -.-+...|...-.+
T Consensus 176 yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~ 254 (531)
T COG3898 176 YAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALE 254 (531)
T ss_pred HHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 877776543 3335667788999999999999999998654 45543 2223333322 23456677776666
Q ss_pred HHHcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC----CCC
Q 002975 581 MLADGIKPNGI-TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM----PLS 655 (861)
Q Consensus 581 m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~----~~~ 655 (861)
..+ +.||-+ .-..-..++.+.|++.+|-.+++.+. ...|....... ..+.|.|+. +++-+++. .++
T Consensus 255 a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aW---K~ePHP~ia~l--Y~~ar~gdt--a~dRlkRa~~L~slk 325 (531)
T COG3898 255 ANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAW---KAEPHPDIALL--YVRARSGDT--ALDRLKRAKKLESLK 325 (531)
T ss_pred Hhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHH---hcCCChHHHHH--HHHhcCCCc--HHHHHHHHHHHHhcC
Confidence 666 788854 34445678899999999999999998 34565554432 234455542 22222221 135
Q ss_pred CC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc-CChhHHHHHHHHHHhCCCccCCcee
Q 002975 656 AD-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASA-GHWEYVANIRKRMKERNLIKEAGCS 730 (861)
Q Consensus 656 p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~-g~~~~a~~~~~~m~~~~~~~~~~~s 730 (861)
|| ....-+...+....|++..|....+.+....|. .++|.+|+++-... |+-.++.....+.. .-..+|.++
T Consensus 326 ~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav--~APrdPaW~ 399 (531)
T COG3898 326 PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAV--KAPRDPAWT 399 (531)
T ss_pred ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHh--cCCCCCccc
Confidence 54 556666777888999999999999999999994 57888999988776 87776655544322 233445444
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.36 E-value=0.0015 Score=61.46 Aligned_cols=92 Identities=15% Similarity=0.022 Sum_probs=69.2
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 002975 627 EHYACMVDLLGRSGSLTEALEFIRSMP-LSA----DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNL 701 (861)
Q Consensus 627 ~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 701 (861)
..|..++..+...|++++|+..+++.. ..| .+.+|..+...+...|+.++|+..++++++++|.....+..++.+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 344455556666677777777766652 222 234788888999999999999999999999999999999999999
Q ss_pred HH-------HcCChhHHHHHHHHH
Q 002975 702 YA-------SAGHWEYVANIRKRM 718 (861)
Q Consensus 702 y~-------~~g~~~~a~~~~~~m 718 (861)
|. ..|++++|...++..
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHH
Confidence 88 788888666555533
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.36 E-value=0.0019 Score=61.01 Aligned_cols=79 Identities=20% Similarity=0.198 Sum_probs=57.5
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhCC-C---CCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 002975 629 YACMVDLLGRSGSLTEALEFIRSMP-L---SAD-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYA 703 (861)
Q Consensus 629 ~~~l~~~~~r~g~~~eA~~~~~~~~-~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~ 703 (861)
+..+...+.+.|++++|...+++.. . .++ ...|..+...+...|+++.|+..++++++..|++...+..++.+|.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4444445555555555555555441 1 111 3577788888899999999999999999999999999999999998
Q ss_pred HcCC
Q 002975 704 SAGH 707 (861)
Q Consensus 704 ~~g~ 707 (861)
..|+
T Consensus 118 ~~g~ 121 (172)
T PRK02603 118 KRGE 121 (172)
T ss_pred HcCC
Confidence 8877
No 171
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.35 E-value=0.0025 Score=67.87 Aligned_cols=76 Identities=18% Similarity=0.050 Sum_probs=50.7
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc
Q 002975 630 ACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASA 705 (861)
Q Consensus 630 ~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~ 705 (861)
..+..+|.+.|++++|+..++++. ..| +...|..+..+|...|+++.|+..++++++++|+++.....+..+....
T Consensus 40 ~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 40 ADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 333344444444444444444431 233 4567777888888889999999999999999999888887776665444
No 172
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.31 E-value=0.0015 Score=66.23 Aligned_cols=257 Identities=11% Similarity=0.048 Sum_probs=142.6
Q ss_pred HHhcCChhHHHHHHHHHhhcCC---CCCHHHHHHHHHHhhcccchHHHHHHHHHH--HHh--CCC-CchhHHHHHHHHHH
Q 002975 464 YAKNLNSEKAFELLHEIEDTGV---GTSAYTFASLLSGASSIGAIGKGEQIHARI--IKS--GFE-SNHCIYNALISMYS 535 (861)
Q Consensus 464 ~~~~g~~~~A~~l~~~m~~~g~---~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~--~~~--~~~-~~~~~~~~li~~y~ 535 (861)
+++.|+....+.+|+...+.|- ..=...|..|..+|.-++++++|.++|..= +.. |-+ -.......|.+.+-
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlK 106 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLK 106 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhh
Confidence 4555666666666666555441 111233444555566666666666665421 111 100 11222333444444
Q ss_pred ccCCHHHHHHHHHhcc-------C--CCchHHHHHHHHHHhcCC--------------------hHHHHHHHHHHHH---
Q 002975 536 RCANVEAAFQVFKEME-------D--RNVISWTSMITGFAKHGF--------------------AARALEIFYKMLA--- 583 (861)
Q Consensus 536 ~~g~~~~A~~~~~~~~-------~--~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~--- 583 (861)
-.|.+++|.-...+-. + -....+-.+...|...|+ .+.|.++|.+-++
T Consensus 107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666554332211 0 011233334444443332 2344455544322
Q ss_pred -cCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHH---hhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCC----
Q 002975 584 -DGIK-PNGITYIAVLSACSHAGLISEGWKHFRSMY---DEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMP---- 653 (861)
Q Consensus 584 -~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~---~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~---- 653 (861)
.|-. .....|.+|...|.-.|+++.|+..++.=. +++|-.. ....++.+.+.+.-.|+++.|.+.++...
T Consensus 187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi 266 (639)
T KOG1130|consen 187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI 266 (639)
T ss_pred HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence 1211 112356677777777888888887765422 2444333 23467778888888888888888887641
Q ss_pred ----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcc----CC--CCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 654 ----LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQ----DP--QDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 654 ----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p--~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
....+..-.+|.++|....+++.|+....+=+.+ +. ....++..|++.|...|..+.|....++-.+
T Consensus 267 elg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 267 ELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1123445567888888888888888887765542 22 3456788999999999999988877665443
No 173
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.19 E-value=0.012 Score=52.90 Aligned_cols=97 Identities=11% Similarity=0.065 Sum_probs=78.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhcc--C-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHH
Q 002975 526 IYNALISMYSRCANVEAAFQVFKEME--D-RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACS 601 (861)
Q Consensus 526 ~~~~li~~y~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~ 601 (861)
..-.+...+...|++++|.++|+-+. + .+..-|-.|..++-..|++++|+..|..... +.|| ...+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHH
Confidence 33445556678899999999999776 3 3567888899999999999999999999999 4565 678888999999
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCC
Q 002975 602 HAGLISEGWKHFRSMYDEHGIVQ 624 (861)
Q Consensus 602 ~~g~~~~a~~~~~~m~~~~~~~p 624 (861)
..|+.+.|++.|+..+...+-.|
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred HcCCHHHHHHHHHHHHHHhccCh
Confidence 99999999999998885554444
No 174
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.17 E-value=0.0011 Score=52.12 Aligned_cols=57 Identities=23% Similarity=0.179 Sum_probs=49.9
Q ss_pred HHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 665 LGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 665 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
...+...++++.|..+++++++++|+++..+...+.+|...|+|++|.+.++...+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 356788899999999999999999999999999999999999999999998877653
No 175
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.17 E-value=0.0042 Score=51.36 Aligned_cols=96 Identities=22% Similarity=0.193 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHh
Q 002975 558 WTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLL 636 (861)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 636 (861)
|..+...+...|++++|+..|++..+. .|+ ...+..+...+...|++++|.++|+..... .|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~------------ 65 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL---DP------------ 65 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CC------------
Confidence 455666666677777777777776663 333 344555555566666666666666555421 11
Q ss_pred hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Q 002975 637 GRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDP 689 (861)
Q Consensus 637 ~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 689 (861)
.+..+|..+...+...|+.+.|...++++++..|
T Consensus 66 -------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 66 -------------------DNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred -------------------cchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 1223455555555556666666666666665555
No 176
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0079 Score=59.58 Aligned_cols=100 Identities=16% Similarity=0.072 Sum_probs=74.6
Q ss_pred ChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHh-C--CHHHHHHHHHHHhccCCCCCchHHHHH
Q 002975 625 RMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVH-G--DTELGKHAAEMILEQDPQDPAAHILLS 699 (861)
Q Consensus 625 ~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~-g--~~~~a~~~~~~~~~~~p~~~~~~~~L~ 699 (861)
|.+-|--|...|.+.|+++.|..-|.+.. ..+++.++..+..++... | +..++..+++++++++|.|..+...|+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA 234 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLA 234 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 44555555555555555555555555542 334566777777764333 2 678899999999999999999999999
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCc
Q 002975 700 NLYASAGHWEYVANIRKRMKERNLI 724 (861)
Q Consensus 700 ~~y~~~g~~~~a~~~~~~m~~~~~~ 724 (861)
-.+...|++.+|...++.|.+....
T Consensus 235 ~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 235 FAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHcccHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999885543
No 177
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.15 E-value=0.01 Score=53.72 Aligned_cols=124 Identities=15% Similarity=0.148 Sum_probs=59.3
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC------CCCCHH
Q 002975 586 IKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP------LSADVL 659 (861)
Q Consensus 586 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~------~~p~~~ 659 (861)
..|+...-..|..+....|+..||...|++.. .--...|....-.+..+...-++..+|...+++.. ..||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~- 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG- 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc-
Confidence 34444444445555555555555555555544 21222344444444455555555555555555431 12222
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHH
Q 002975 660 VWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVAN 713 (861)
Q Consensus 660 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~ 713 (861)
.-.+..++...|..+.|+..++.++...| ++..-...+..++++||.+++..
T Consensus 163 -~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 163 -HLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred -hHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHH
Confidence 22334445555555555555555555555 23333444455555555555443
No 178
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.14 E-value=0.00076 Score=51.63 Aligned_cols=61 Identities=20% Similarity=0.237 Sum_probs=48.9
Q ss_pred HHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC
Q 002975 632 MVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDP 692 (861)
Q Consensus 632 l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 692 (861)
+...+.+.|++++|.+.|++.. ..| +...|..+..++...|+++.|...++++++.+|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 3456778888888888888863 445 566888999999999999999999999999999874
No 179
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.14 E-value=0.0087 Score=56.28 Aligned_cols=63 Identities=13% Similarity=0.124 Sum_probs=42.8
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002975 555 VISWTSMITGFAKHGFAARALEIFYKMLADGIKPN--GITYIAVLSACSHAGLISEGWKHFRSMY 617 (861)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 617 (861)
...|..+...+...|++++|+..|++.+.....|. ..++..+...+.+.|++++|+..++...
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34666677777777888888888877776422221 2366677777777777777777777766
No 180
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.13 E-value=0.016 Score=59.39 Aligned_cols=136 Identities=14% Similarity=0.148 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHH-HHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 002975 556 ISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSA-CSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVD 634 (861)
Q Consensus 556 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 634 (861)
.+|-.++....+.+..+.|..+|.+.++.+ .-+...|...... +...++.+.|..+|+...+.++ .+...+...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~--~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP--SDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT--T-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 367778888888888888888888887542 2233445444444 3335666669999998886653 35566778888
Q ss_pred HhhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCch
Q 002975 635 LLGRSGSLTEALEFIRSMP-LSAD----VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAA 694 (861)
Q Consensus 635 ~~~r~g~~~eA~~~~~~~~-~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 694 (861)
.+.+.|+.+.|..+|++.. .-|. ..+|...+.--..+|+.+....+.+++.+..|++...
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 8899999999999998863 2222 3599999999999999999999999999998875433
No 181
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.10 E-value=0.46 Score=49.35 Aligned_cols=108 Identities=15% Similarity=0.148 Sum_probs=70.8
Q ss_pred hhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccc
Q 002975 425 VGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGA 504 (861)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 504 (861)
+.+..+.-+...|+...|.++-.+..-+|-.-|-..+.+|+..+++++-.++-.. +-.++-|-.++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3344455566677777777777777777777777778888888887766654322 2234666777777777777
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHH
Q 002975 505 IGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFK 548 (861)
Q Consensus 505 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 548 (861)
..+|..+...+ .+..-+.+|.++|++.+|.+.--
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 77776665541 12455677777777777766543
No 182
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.10 E-value=0.019 Score=59.09 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=9.7
Q ss_pred HHHHHhcCChhHHHHHHHHH
Q 002975 461 VDAYAKNLNSEKAFELLHEI 480 (861)
Q Consensus 461 i~~~~~~g~~~~A~~l~~~m 480 (861)
...|-..|++++|.+.|.+.
T Consensus 42 a~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHH
Confidence 44455555555555555444
No 183
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.05 E-value=0.00082 Score=52.01 Aligned_cols=63 Identities=21% Similarity=0.319 Sum_probs=42.3
Q ss_pred hcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 002975 638 RSGSLTEALEFIRSMP-L-SADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSN 700 (861)
Q Consensus 638 r~g~~~eA~~~~~~~~-~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 700 (861)
..|++++|+++++++. . +.+..++..+..+|...|+++.|+..++++.+.+|+++..+..++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 4566677777766652 2 3356666777777777788888888888888888877666655554
No 184
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.04 E-value=0.14 Score=55.35 Aligned_cols=96 Identities=16% Similarity=0.171 Sum_probs=57.0
Q ss_pred HHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH
Q 002975 530 LISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEG 609 (861)
Q Consensus 530 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 609 (861)
..+++...|+.++|..+. ..+|-.+-++++-+++-. .+..+...+..-+-+...+.-|
T Consensus 709 AAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLA 766 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLA 766 (1081)
T ss_pred HHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchH
Confidence 345566677777765543 334444555554444322 2233444444444555666677
Q ss_pred HHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCCC
Q 002975 610 WKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSAD 657 (861)
Q Consensus 610 ~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~ 657 (861)
-++|..|-. ...++++....|+++||..+-++.| ..||
T Consensus 767 aeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~d 805 (1081)
T KOG1538|consen 767 AEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDD 805 (1081)
T ss_pred HHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcccccc
Confidence 777777652 2457788888888888888888876 4444
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.01 E-value=0.06 Score=48.93 Aligned_cols=98 Identities=15% Similarity=0.232 Sum_probs=47.6
Q ss_pred CCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC--CCchH
Q 002975 621 GIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP---LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ--DPAAH 695 (861)
Q Consensus 621 ~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~ 695 (861)
.+.|++.+--.|...+.+.|+..||...|++.. ...|+...-.+..+....++...|...++++.+-+|. .+...
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 344444444445555555555555555554431 3334444444555555555555555555555555443 34444
Q ss_pred HHHHHHHHHcCChhHHHHHHHHH
Q 002975 696 ILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 696 ~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
.+++..|...|++.+|...++..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a 186 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVA 186 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHH
Confidence 44555555555555544444433
No 186
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.00 E-value=0.11 Score=56.33 Aligned_cols=81 Identities=16% Similarity=0.069 Sum_probs=51.6
Q ss_pred ChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHh
Q 002975 387 NHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAK 466 (861)
Q Consensus 387 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 466 (861)
+..+...+..-+.+...+..|-++|..+-+. ..++++....+++++|..+-++.++--...|-.-..-++.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAE 816 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhh
Confidence 3344444445555666777777887776443 3577788888899999888888876433344444455555
Q ss_pred cCChhHHHHH
Q 002975 467 NLNSEKAFEL 476 (861)
Q Consensus 467 ~g~~~~A~~l 476 (861)
..+++||.+.
T Consensus 817 ~DrFeEAqkA 826 (1081)
T KOG1538|consen 817 NDRFEEAQKA 826 (1081)
T ss_pred hhhHHHHHHH
Confidence 6666666543
No 187
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.97 E-value=0.072 Score=54.89 Aligned_cols=125 Identities=12% Similarity=0.190 Sum_probs=69.9
Q ss_pred HHHHHHHHcc-CCHHHHHHHHHhccC-----CC----chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----ChH-
Q 002975 528 NALISMYSRC-ANVEAAFQVFKEMED-----RN----VISWTSMITGFAKHGFAARALEIFYKMLADGIKP-----NGI- 591 (861)
Q Consensus 528 ~~li~~y~~~-g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~- 591 (861)
..+..+|... |++++|.+.|++..+ .. ...+..+...+.+.|++++|+++|++....-... +..
T Consensus 118 ~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~ 197 (282)
T PF14938_consen 118 KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKE 197 (282)
T ss_dssp HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 3344556666 677777777766542 11 1244556677888888888888888877643221 211
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCCCCh--hHHHHHHHHhh--hcCCHHHHHHHHHhC
Q 002975 592 TYIAVLSACSHAGLISEGWKHFRSMYDEH-GIVQRM--EHYACMVDLLG--RSGSLTEALEFIRSM 652 (861)
Q Consensus 592 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~~--~~~~~l~~~~~--r~g~~~eA~~~~~~~ 652 (861)
.|...+-++...|+...|.+.|+...... ++..+. .....|++++- ....+++|+.-|+.+
T Consensus 198 ~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 198 YFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 23344445666788888888888766221 222222 23445555553 244577777777766
No 188
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.88 E-value=0.019 Score=61.18 Aligned_cols=117 Identities=15% Similarity=0.132 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHhhcccchHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC----CCchHHH
Q 002975 486 GTSAYTFASLLSGASSIGAIGKGEQIHARIIKS--GFESNHCIYNALISMYSRCANVEAAFQVFKEMED----RNVISWT 559 (861)
Q Consensus 486 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~ 559 (861)
+.+...+..++..+.+..+++.+..++-+.... ....-..+..++|..|.+.|..+++..+++.=.. ||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 344445555555555555555555554444433 1112223334555555555555555555543322 4555555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 002975 560 SMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSH 602 (861)
Q Consensus 560 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 602 (861)
.||..+.+.|++..|.++..+|..++...+..|+...+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 5555555555555555555555555444444444444444433
No 189
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.85 E-value=0.0025 Score=49.39 Aligned_cols=64 Identities=22% Similarity=0.238 Sum_probs=48.9
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhC-CHHHHHHHHHHHhccCC
Q 002975 626 MEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHG-DTELGKHAAEMILEQDP 689 (861)
Q Consensus 626 ~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 689 (861)
...|..+...+.+.|++++|+..|++.. ..| ++.+|..+..++...| +.+.|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3455666667777777777777776652 334 5678888889999999 79999999999999988
No 190
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.84 E-value=0.0033 Score=51.04 Aligned_cols=80 Identities=15% Similarity=0.171 Sum_probs=50.7
Q ss_pred cCChHHHHHHHHHHHHcCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCh-hHHHHHHHHhhhcCCHHHH
Q 002975 568 HGFAARALEIFYKMLADGIK-PNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRM-EHYACMVDLLGRSGSLTEA 645 (861)
Q Consensus 568 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~r~g~~~eA 645 (861)
.|++++|+.+|+++.+.... |+...+..+..++.+.|++++|..+++. . ...|+. ...-.+...+.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 57788888888888884321 2344555577888888888888888876 2 222222 2233346677777778777
Q ss_pred HHHHHh
Q 002975 646 LEFIRS 651 (861)
Q Consensus 646 ~~~~~~ 651 (861)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777764
No 191
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.83 E-value=0.097 Score=50.39 Aligned_cols=165 Identities=13% Similarity=0.056 Sum_probs=115.4
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHhcCCC--Ce--------ehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHH
Q 002975 426 GNSLISMYARSGRMEDARKAFESLFEK--NL--------VSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASL 495 (861)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~--------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 495 (861)
+++|...+.-..-+++-...|+.-..+ .+ ..-+.++..+.-.|.+.-.+.++++.++...+-++.....+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 345555555444455555555443221 11 23466777777788999999999999988777788888889
Q ss_pred HHHhhcccchHHHHHHHHHHHHhCCCCchhHHHH-----HHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHh
Q 002975 496 LSGASSIGAIGKGEQIHARIIKSGFESNHCIYNA-----LISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAK 567 (861)
Q Consensus 496 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 567 (861)
.+.-.+.|+.+.|...++...+..-..+....+. ....|.-.+++.+|...|+++.. .|++.-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 9999999999999999998876533344333333 34456667888889999988874 455666665556667
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHH
Q 002975 568 HGFAARALEIFYKMLADGIKPNGIT 592 (861)
Q Consensus 568 ~g~~~~A~~~~~~m~~~g~~p~~~t 592 (861)
.|+..+|++..+.|.+ ..|...+
T Consensus 299 lg~l~DAiK~~e~~~~--~~P~~~l 321 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQ--QDPRHYL 321 (366)
T ss_pred HHHHHHHHHHHHHHhc--cCCccch
Confidence 7899999999999998 4555443
No 192
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.79 E-value=0.093 Score=52.38 Aligned_cols=171 Identities=15% Similarity=0.103 Sum_probs=87.1
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCCe---eh---HHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhc--c
Q 002975 431 SMYARSGRMEDARKAFESLFEKNL---VS---YNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASS--I 502 (861)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~~~~~~~---~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--~ 502 (861)
..+.+.|++++|.+.|+.+....+ .. .-.++.+|.+.+++++|...|++..+.-..-...-+...+.+.+. .
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~ 119 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMAL 119 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhc
Confidence 334557788888888877744322 11 223456677788888888888887765433223333333333321 0
Q ss_pred c---------------c---hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHH
Q 002975 503 G---------------A---IGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITG 564 (861)
Q Consensus 503 ~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 564 (861)
+ + ...|...++ .+++-|-.+.-..+|..-+..+...-...--.+..-
T Consensus 120 ~~~~~~~~~~~~~~~rD~~~~~~A~~~~~---------------~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~ 184 (243)
T PRK10866 120 DDSALQGFFGVDRSDRDPQHARAAFRDFS---------------KLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEY 184 (243)
T ss_pred chhhhhhccCCCccccCHHHHHHHHHHHH---------------HHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 112222222 233333333333444443333321111111133455
Q ss_pred HHhcCChHHHHHHHHHHHHc--CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002975 565 FAKHGFAARALEIFYKMLAD--GIKPNGITYIAVLSACSHAGLISEGWKHFRSM 616 (861)
Q Consensus 565 ~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 616 (861)
|.+.|.+.-|+.-|+.+++. +.+........+..++.+.|..++|..+...+
T Consensus 185 Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 185 YTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 66777777777777777763 11122345556667777777777776665443
No 193
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.79 E-value=0.038 Score=56.67 Aligned_cols=126 Identities=10% Similarity=0.086 Sum_probs=65.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHH-hhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 002975 456 SYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSG-ASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMY 534 (861)
Q Consensus 456 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 534 (861)
+|..++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. +..+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34555555555555555555555555322 1112222222222 12234445566666666554 355566666666666
Q ss_pred HccCCHHHHHHHHHhccC--C----CchHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002975 535 SRCANVEAAFQVFKEMED--R----NVISWTSMITGFAKHGFAARALEIFYKMLA 583 (861)
Q Consensus 535 ~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 583 (861)
.+.|+.+.|..+|++... + -...|...+.--.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777766653 1 123666666666666776666666666666
No 194
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.78 E-value=0.0053 Score=64.61 Aligned_cols=66 Identities=12% Similarity=-0.099 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCch---HHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 656 ADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAA---HILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 656 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
.+...|+.+..++...|++++|+..++++++++|++..+ |+.++.+|...|+.++|.+.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 357788899999999999999999999999999988854 889999999999999999888877664
No 195
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.77 E-value=0.15 Score=53.35 Aligned_cols=160 Identities=19% Similarity=0.157 Sum_probs=94.3
Q ss_pred HHHHHHHccCCHHHHHHHHHhccCC---Cch----HHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 002975 529 ALISMYSRCANVEAAFQVFKEMEDR---NVI----SWTSMITGFAK---HGFAARALEIFYKMLADGIKPNGITYIAVLS 598 (861)
Q Consensus 529 ~li~~y~~~g~~~~A~~~~~~~~~~---~~~----~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 598 (861)
.++-.|-...+++.-.++++.+... +.. .-....-++-+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444577777777777777777642 111 11122334445 6778888888877665555666667766655
Q ss_pred HHHh---------cCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHH----HHHH---H-----hCCCCC-
Q 002975 599 ACSH---------AGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEA----LEFI---R-----SMPLSA- 656 (861)
Q Consensus 599 a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA----~~~~---~-----~~~~~p- 656 (861)
.|-. ....++|...|.+. +.+.|+..+--.++.++..+|...+. .++- . +-...+
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 4421 22366777776643 34555544333344444444432222 2221 1 111233
Q ss_pred -CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Q 002975 657 -DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD 691 (861)
Q Consensus 657 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 691 (861)
|--.+.+++.++...||.+.|.+++++++++.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 33344679999999999999999999999998865
No 196
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.75 E-value=0.0021 Score=44.37 Aligned_cols=42 Identities=26% Similarity=0.406 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 002975 659 LVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSN 700 (861)
Q Consensus 659 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 700 (861)
.+|..+..++...|+.+.|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467889999999999999999999999999999999888764
No 197
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.73 E-value=0.01 Score=59.70 Aligned_cols=92 Identities=9% Similarity=0.066 Sum_probs=59.3
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC---CchHHHHHH
Q 002975 629 YACMVDLLGRSGSLTEALEFIRSMP-LSAD----VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD---PAAHILLSN 700 (861)
Q Consensus 629 ~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~L~~ 700 (861)
|..-++++.+.|++++|...|+... ..|+ +..+.-++.++...|+++.|...|+++++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 4444445455566666666665542 2232 2355556777777788888888888888777764 345556677
Q ss_pred HHHHcCChhHHHHHHHHHHh
Q 002975 701 LYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 701 ~y~~~g~~~~a~~~~~~m~~ 720 (861)
+|...|++++|.++++.+.+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77788888888887776654
No 198
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.72 E-value=0.064 Score=59.83 Aligned_cols=57 Identities=9% Similarity=0.096 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002975 558 WTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSM 616 (861)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 616 (861)
|.++...+...|++++|...+++.++ +.|+...|..+...+...|+.++|...+++.
T Consensus 423 ~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 423 YEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333333334444444444444444 2334444444444444444444444444443
No 199
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.71 E-value=0.041 Score=47.64 Aligned_cols=92 Identities=17% Similarity=0.166 Sum_probs=67.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCh-hHHHHHHHHhh
Q 002975 561 MITGFAKHGFAARALEIFYKMLADGIKPN--GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRM-EHYACMVDLLG 637 (861)
Q Consensus 561 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~ 637 (861)
+..++-..|+.++|+.+|++.++.|.... ...+..+.+++...|++++|..+++.....+.-.+.. .....+...+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45667788999999999999999887665 3467788889999999999999999887554221112 22223345777
Q ss_pred hcCCHHHHHHHHHhC
Q 002975 638 RSGSLTEALEFIRSM 652 (861)
Q Consensus 638 r~g~~~eA~~~~~~~ 652 (861)
..|+.+||++.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 889999998876543
No 200
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.70 E-value=0.026 Score=46.94 Aligned_cols=80 Identities=11% Similarity=0.155 Sum_probs=65.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhcCC-CCCHHHHHHHHHHhhccc--------chHHHHHHHHHHHHhCCCCchhHH
Q 002975 457 YNTMVDAYAKNLNSEKAFELLHEIEDTGV-GTSAYTFASLLSGASSIG--------AIGKGEQIHARIIKSGFESNHCIY 527 (861)
Q Consensus 457 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 527 (861)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+++.++..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456667777999999999999999999 899999999999886542 345567788889999999999999
Q ss_pred HHHHHHHHc
Q 002975 528 NALISMYSR 536 (861)
Q Consensus 528 ~~li~~y~~ 536 (861)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 998887654
No 201
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.69 E-value=0.031 Score=52.65 Aligned_cols=117 Identities=14% Similarity=0.157 Sum_probs=77.0
Q ss_pred CCCHHHHHHHHHHhhc-----ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHH
Q 002975 486 GTSAYTFASLLSGASS-----IGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTS 560 (861)
Q Consensus 486 ~p~~~t~~~ll~a~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~ 560 (861)
..|..+|..++..+.+ .|.++-....+.+|.+-|+..|..+|+.|++.+=| |.+- -..+|+.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~---------- 111 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE---------- 111 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH----------
Confidence 3455555555555533 35666667777888888999999999999988765 3332 11122211
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 002975 561 MITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGL-ISEGWKHFRSMY 617 (861)
Q Consensus 561 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~m~ 617 (861)
-. -...+.+-|++++++|...|+-||..|+..|+..+.+.+. +.+.+++..-|.
T Consensus 112 -F~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 112 -FM--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred -hc--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 11 1224567789999999999999999999999999876654 334444444444
No 202
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.013 Score=60.23 Aligned_cols=84 Identities=17% Similarity=0.176 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeEEEeCCe
Q 002975 658 VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSWIEADNK 737 (861)
Q Consensus 658 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~ 737 (861)
..++..|...|.+.+++..|+....++++++|+|.-+.+.-+.+|...|.++.|...++++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k----------------- 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK----------------- 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH-----------------
Confidence 346677778888999999999999999999999999999999999999999999999999876
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 002975 738 VHKFHVGETSHPKTLEIYAELDQLALKIKE 767 (861)
Q Consensus 738 ~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~ 767 (861)
..|.++.|...|..+.+++++
T Consensus 320 ---------~~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 320 ---------LEPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred ---------hCCCcHHHHHHHHHHHHHHHH
Confidence 357888899999888888775
No 203
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.67 E-value=0.027 Score=60.05 Aligned_cols=120 Identities=13% Similarity=0.083 Sum_probs=75.3
Q ss_pred CCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHc--CCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC----CCeeh
Q 002975 383 QVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKR--GRALDDCVGNSLISMYARSGRMEDARKAFESLFE----KNLVS 456 (861)
Q Consensus 383 g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~ 456 (861)
+.+.+...+..++..+....+++.++.++-..... ....-..+..++|..|.+.|..+++..+++.=.. +|..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44556777777788887777778877777776654 2222334445666666666666666666654322 45566
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcc
Q 002975 457 YNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSI 502 (861)
Q Consensus 457 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 502 (861)
+|.||+.+.+.|++..|.++..+|..++...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 6666666666666666666666666666555666665555555443
No 204
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.62 E-value=0.13 Score=51.41 Aligned_cols=173 Identities=14% Similarity=0.125 Sum_probs=109.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHhccC--CCc-hH---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hHHHHHHHH
Q 002975 527 YNALISMYSRCANVEAAFQVFKEMED--RNV-IS---WTSMITGFAKHGFAARALEIFYKMLADGIKPN--GITYIAVLS 598 (861)
Q Consensus 527 ~~~li~~y~~~g~~~~A~~~~~~~~~--~~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~ 598 (861)
.-.....+.+.|++++|.+.|+.+.. |+. .. .-.++.+|.+.+++++|+..|++.++ ..|+ .+-+...+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCchHHHHHHH
Confidence 33345556678999999999998874 332 11 23456777889999999999999988 4454 234444444
Q ss_pred HHHh--cC---------------C---HHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCH
Q 002975 599 ACSH--AG---------------L---ISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADV 658 (861)
Q Consensus 599 a~~~--~g---------------~---~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~ 658 (861)
+.++ .+ + ..+|...|+.++ +.|-...-..+|...+..+. +.
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li----------------~~yP~S~ya~~A~~rl~~l~---~~ 173 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV----------------RGYPNSQYTTDATKRLVFLK---DR 173 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH----------------HHCcCChhHHHHHHHHHHHH---HH
Confidence 4332 11 1 123334444444 33333334455544443331 11
Q ss_pred HHH--HHHHHHHHHhCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 659 LVW--RTFLGACRVHGDTELGKHAAEMILEQDPQDP---AAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 659 ~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
..- -....-|.+.|.+.-|..-++.+++-.|+.+ .+...+.+.|.+.|..++|.++...+..
T Consensus 174 la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 174 LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 111 1234457888999999999999999888754 5667888999999999999998876643
No 205
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.59 E-value=0.015 Score=50.31 Aligned_cols=83 Identities=19% Similarity=0.125 Sum_probs=57.4
Q ss_pred HhhhcCCHHHHHHHHHhCC---CCC-C-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC---CCchHHHHHHHHHHcC
Q 002975 635 LLGRSGSLTEALEFIRSMP---LSA-D-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ---DPAAHILLSNLYASAG 706 (861)
Q Consensus 635 ~~~r~g~~~eA~~~~~~~~---~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~L~~~y~~~g 706 (861)
++-..|+.++|+.++++.. ... + ...+-.+.++++..|++++|+.++++.++-.|+ +....+.++.++...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 3344455555555555431 111 1 234556778888889999999999988888887 6677778888899999
Q ss_pred ChhHHHHHHHH
Q 002975 707 HWEYVANIRKR 717 (861)
Q Consensus 707 ~~~~a~~~~~~ 717 (861)
+++||.+..-.
T Consensus 90 r~~eAl~~~l~ 100 (120)
T PF12688_consen 90 RPKEALEWLLE 100 (120)
T ss_pred CHHHHHHHHHH
Confidence 99998876543
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.55 E-value=0.055 Score=54.43 Aligned_cols=103 Identities=12% Similarity=0.058 Sum_probs=62.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHH
Q 002975 558 WTSMITGFAKHGFAARALEIFYKMLADGIKPNG----ITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMV 633 (861)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 633 (861)
|...+..+.+.|++++|+..|+.+++ ..|+. ..+.-+..++...|++++|...|+.+.+.+.-.|.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~-------- 215 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK-------- 215 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc--------
Confidence 33333333445667777777777766 34442 34455666666666666666666666533321111
Q ss_pred HHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCc
Q 002975 634 DLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPA 693 (861)
Q Consensus 634 ~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 693 (861)
....|..++..+...|+.+.|...++++++..|++..
T Consensus 216 -----------------------~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 216 -----------------------AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred -----------------------hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 2334445566677888899999999999998887643
No 207
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.45 E-value=0.28 Score=53.71 Aligned_cols=192 Identities=14% Similarity=0.080 Sum_probs=101.4
Q ss_pred ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCC-----CchHHHHHHHHHHhcCChHHHHH
Q 002975 502 IGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDR-----NVISWTSMITGFAKHGFAARALE 576 (861)
Q Consensus 502 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~ 576 (861)
-|.+++|++++-.+-+.. ..|.++.+.|++-...++++.-... -...|+.+...++....|++|.+
T Consensus 747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666665554432 2356677777777777776654321 12567777777777777777777
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCC
Q 002975 577 IFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSA 656 (861)
Q Consensus 577 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p 656 (861)
+|..-... ...+.++.+..++++-..+-+.+ +-+......|.+++.+.|.-++|.+.+-+-. .|
T Consensus 818 yY~~~~~~---------e~~~ecly~le~f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s-~p 881 (1189)
T KOG2041|consen 818 YYSYCGDT---------ENQIECLYRLELFGELEVLARTL------PEDSELLPVMADMFTSVGMCDQAVEAYLRRS-LP 881 (1189)
T ss_pred HHHhccch---------HhHHHHHHHHHhhhhHHHHHHhc------CcccchHHHHHHHHHhhchHHHHHHHHHhcc-Cc
Confidence 76543221 12445555555555544443333 2333444556677777777777776665543 22
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHH-------------hccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 002975 657 DVLVWRTFLGACRVHGDTELGKHAAEMI-------------LEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNL 723 (861)
Q Consensus 657 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~-------------~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~ 723 (861)
. +.+.+|...++..+|.+.+++. -++-.+ ..+..-...+.++|++-+|.++..+|.++..
T Consensus 882 k-----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~--~~~~eaIe~~Rka~~~~daarll~qmae~e~ 954 (1189)
T KOG2041|consen 882 K-----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLAD--ANHMEAIEKDRKAGRHLDAARLLSQMAEREQ 954 (1189)
T ss_pred H-----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhh--cchHHHHHHhhhcccchhHHHHHHHHhHHHh
Confidence 1 2233444444444444333321 111000 0111223356667777777777777755443
Q ss_pred cc
Q 002975 724 IK 725 (861)
Q Consensus 724 ~~ 725 (861)
+|
T Consensus 955 ~K 956 (1189)
T KOG2041|consen 955 EK 956 (1189)
T ss_pred hc
Confidence 33
No 208
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.45 E-value=1.3 Score=45.47 Aligned_cols=266 Identities=15% Similarity=0.102 Sum_probs=162.8
Q ss_pred CCCChhhHHHHHHHhc--ccCChHHHHHHHHHHHHcCCCCCcch--hhHHHHHHHHcCCHHHHHHHHHhcCCC--C-eeh
Q 002975 384 VAPNHFTFASVLKACG--NLLDSNVAEQVYTHAVKRGRALDDCV--GNSLISMYARSGRMEDARKAFESLFEK--N-LVS 456 (861)
Q Consensus 384 ~~p~~~t~~~ll~a~~--~~~~~~~a~~i~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~--~-~~~ 456 (861)
+.-|..-...+|.+-. -.|+.+.|++-|+.|... |.... ...|.----+.|..+.|..+-+..... . ...
T Consensus 114 lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA 190 (531)
T COG3898 114 LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWA 190 (531)
T ss_pred hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchH
Confidence 4456666666665543 457888888888887642 11110 111222234578888888877776433 2 246
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhcC-CCCCHH--HHHHHHHHhhc---ccchHHHHHHHHHHHHhCCCCchhH-HHH
Q 002975 457 YNTMVDAYAKNLNSEKAFELLHEIEDTG-VGTSAY--TFASLLSGASS---IGAIGKGEQIHARIIKSGFESNHCI-YNA 529 (861)
Q Consensus 457 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~--t~~~ll~a~~~---~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ 529 (861)
|.+.+...+..|+++.|+++++.-.... +.+|.. .-..|+.+-+. ..+...|+..-.+..+ +.||..- ...
T Consensus 191 ~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~ 268 (531)
T COG3898 191 ARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVV 268 (531)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHH
Confidence 8888999999999999999998876533 455543 22233333221 1234455555544444 3444322 223
Q ss_pred HHHHHHccCCHHHHHHHHHhccC--CCchHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCC-hHHHHHHHHHHHhcCC
Q 002975 530 LISMYSRCANVEAAFQVFKEMED--RNVISWTSMITGFAKHGFAARALEIFYKMLAD-GIKPN-GITYIAVLSACSHAGL 605 (861)
Q Consensus 530 li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-~~t~~~ll~a~~~~g~ 605 (861)
-...|.+.|++.++-.+++.+-+ |.+..| .+..+.+.|+ .++.-+++..+. .++|| ..+...+..+-...|+
T Consensus 269 AAralf~d~~~rKg~~ilE~aWK~ePHP~ia--~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e 344 (531)
T COG3898 269 AARALFRDGNLRKGSKILETAWKAEPHPDIA--LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGE 344 (531)
T ss_pred HHHHHHhccchhhhhhHHHHHHhcCCChHHH--HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccc
Confidence 34678899999999999998874 333333 2333344554 455445444332 36776 4567778888888899
Q ss_pred HHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhh-cCCHHHHHHHHHhCCCCCCHHHH
Q 002975 606 ISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGR-SGSLTEALEFIRSMPLSADVLVW 661 (861)
Q Consensus 606 ~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r-~g~~~eA~~~~~~~~~~p~~~~~ 661 (861)
+..|..--+... ...|....|..|.|.-.- .|+-.++...+-+....|....|
T Consensus 345 ~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW 398 (531)
T COG3898 345 FSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAW 398 (531)
T ss_pred hHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcc
Confidence 888877655544 667888888888887644 48888888888776433333334
No 209
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.26 Score=47.55 Aligned_cols=144 Identities=12% Similarity=0.027 Sum_probs=101.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC----CCCChhHHHHH
Q 002975 557 SWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHG----IVQRMEHYACM 632 (861)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----~~p~~~~~~~l 632 (861)
.-+.++..+.-+|.+.-.+.++++.++...+-++.....|.+.-.+.|+++.|..+|+...+..+ +.-..-+...+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44566777777888888899999999965455677788888888999999999999997764332 33333333444
Q ss_pred HHHhhhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 002975 633 VDLLGRSGSLTEALEFIRSMPL-SA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSN 700 (861)
Q Consensus 633 ~~~~~r~g~~~eA~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 700 (861)
...|.-++++.+|...+.+.+. .| |+...|.-.-...-.|+...|++..+.+++..|.....-..+.|
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~n 328 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFN 328 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHH
Confidence 4567778889999999988762 22 34444443333344688899999999999999876554433333
No 210
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.41 E-value=0.052 Score=49.57 Aligned_cols=107 Identities=18% Similarity=0.116 Sum_probs=71.8
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCC--ChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHH
Q 002975 600 CSHAGLISEGWKHFRSMYDEHGIVQ--RMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELG 677 (861)
Q Consensus 600 ~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 677 (861)
....|+.+.+...++.+..-+.-.+ +... ..........++++ -..+...++..+...|+.+.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHH
Confidence 3456677777777777664432211 1110 22233333333333 123556677888899999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 678 KHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 678 ~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+..+++++..+|-|...|..|..+|...|+..+|.++++.++.
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887743
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.41 E-value=0.0097 Score=46.69 Aligned_cols=65 Identities=26% Similarity=0.282 Sum_probs=53.1
Q ss_pred HHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHH
Q 002975 634 DLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILL 698 (861)
Q Consensus 634 ~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 698 (861)
..|.+.+++++|.+.++.+. ..| ++..|......+...|+++.|...++++++..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 46778888888888888873 444 566888888889999999999999999999999887665543
No 212
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.33 E-value=0.033 Score=52.46 Aligned_cols=97 Identities=14% Similarity=0.248 Sum_probs=70.7
Q ss_pred HHHHHhc--cCCCchHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc-------------
Q 002975 544 FQVFKEM--EDRNVISWTSMITGFAK-----HGFAARALEIFYKMLADGIKPNGITYIAVLSACSHA------------- 603 (861)
Q Consensus 544 ~~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 603 (861)
...|+.. ..+|-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444444 34566666666666654 355566666677777778877888888877765432
Q ss_pred ---CCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCC
Q 002975 604 ---GLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGS 641 (861)
Q Consensus 604 ---g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~ 641 (861)
.+.+-|++++++|. .+|+.||.+++..+++.+|+.+.
T Consensus 114 hyp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccH
Confidence 23467899999998 89999999999999999998875
No 213
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=1.6 Score=45.33 Aligned_cols=227 Identities=13% Similarity=0.050 Sum_probs=114.4
Q ss_pred HHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHH--HhhcccchHHHHHHHHHHHHhCCCCchhH-------------H
Q 002975 463 AYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLS--GASSIGAIGKGEQIHARIIKSGFESNHCI-------------Y 527 (861)
Q Consensus 463 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~--a~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~ 527 (861)
++.-.|++++|.+.-....+.. .. ..+..+++ ++.-.++.+.+..-+.+.++.+ |+... +
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld-~~--n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD-AT--NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc-cc--hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHH
Confidence 4455667777666655554322 11 11222222 2233455566666666555443 22111 1
Q ss_pred HHHHHHHHccCCHHHHHHHHHhccC-------CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-HHHHHHHHH
Q 002975 528 NALISMYSRCANVEAAFQVFKEMED-------RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNG-ITYIAVLSA 599 (861)
Q Consensus 528 ~~li~~y~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a 599 (861)
..=.+...+.|.+..|.+.|.+... ++...|-....+..+.|+.++|+.--++..+ +.|.. ..+..-..+
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c 330 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANC 330 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHH
Confidence 1122344567777777777776653 2333455555556677777777776666655 44432 234444445
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 002975 600 CSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKH 679 (861)
Q Consensus 600 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 679 (861)
+...+.|++|.+.|+...+. ..+..+-.. +.+|..-+++.. -.-|-.+++.-+...+.+....
T Consensus 331 ~l~le~~e~AV~d~~~a~q~---~~s~e~r~~----------l~~A~~aLkkSk----Rkd~ykilGi~~~as~~eikka 393 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQL---EKDCEIRRT----------LREAQLALKKSK----RKDWYKILGISRNASDDEIKKA 393 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhh---ccccchHHH----------HHHHHHHHHHhh----hhhHHHHhhhhhhcccchhhhH
Confidence 55566777777777665521 111111111 223333333321 2234555555555555565555
Q ss_pred HHHHHhccCCCCC-ch-------HHHHHHHHHHcCChhHHHH
Q 002975 680 AAEMILEQDPQDP-AA-------HILLSNLYASAGHWEYVAN 713 (861)
Q Consensus 680 ~~~~~~~~~p~~~-~~-------~~~L~~~y~~~g~~~~a~~ 713 (861)
.-+.++...|+-. .. +...++.|.-.++.++..+
T Consensus 394 yrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r 435 (486)
T KOG0550|consen 394 YRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVR 435 (486)
T ss_pred HHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhh
Confidence 5566777777632 22 3355666666666666544
No 214
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.31 E-value=0.029 Score=47.56 Aligned_cols=89 Identities=19% Similarity=0.156 Sum_probs=73.4
Q ss_pred HHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC----chHHHHHHHHHHcCC
Q 002975 634 DLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDP----AAHILLSNLYASAGH 707 (861)
Q Consensus 634 ~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~L~~~y~~~g~ 707 (861)
-++...|++++|++.|.+.. .+..+..||.-..+++..|+.+.|..-+++++++.-+.. .+|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 36778899999999988763 345678999999999999999999999999999854433 357888999999999
Q ss_pred hhHHHHHHHHHHhCC
Q 002975 708 WEYVANIRKRMKERN 722 (861)
Q Consensus 708 ~~~a~~~~~~m~~~~ 722 (861)
-++|..-|+..-+-|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 999999888776644
No 215
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.25 E-value=0.083 Score=44.03 Aligned_cols=80 Identities=13% Similarity=0.140 Sum_probs=61.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhhcCCCCChhH
Q 002975 558 WTSMITGFAKHGFAARALEIFYKMLADGI-KPNGITYIAVLSACSHAG--------LISEGWKHFRSMYDEHGIVQRMEH 628 (861)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~~ 628 (861)
-...|..+...|++...-.+|+.+...|+ .|+..+|+.++.+..+.. ++-+.+.+|+.|. ..+++|+.++
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL-~~~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDIL-SNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH-HhccCCcHHH
Confidence 34456666667999999999999999999 889999999998876542 2445677888887 6678888888
Q ss_pred HHHHHHHhhh
Q 002975 629 YACMVDLLGR 638 (861)
Q Consensus 629 ~~~l~~~~~r 638 (861)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888876643
No 216
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.22 E-value=0.16 Score=52.14 Aligned_cols=304 Identities=15% Similarity=0.095 Sum_probs=151.3
Q ss_pred HHhcCCChHHHHHHHHHHhhCCCC---CChhhHHHHHHHhcccCChHHHHHHHHHHHH----cCCC-CCcchhhHHHHHH
Q 002975 362 YVQSGGRDKEAVKLFSDMIQGQVA---PNHFTFASVLKACGNLLDSNVAEQVYTHAVK----RGRA-LDDCVGNSLISMY 433 (861)
Q Consensus 362 ~~~~g~~~~~A~~l~~~m~~~g~~---p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~----~g~~-~~~~~~~~li~~~ 433 (861)
+++.|+ ....+.+|+..++.|.. .=+..|..+-++|.-.+++++|.+.|..=+- .|-. -.......|.+.+
T Consensus 27 Lck~gd-craGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGD-CRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccc-hhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 566777 88888888888887642 2234466666777778888888888754221 1110 0111222234444
Q ss_pred HHcCCHHHHHHHHHhcCC-------C--CeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccc
Q 002975 434 ARSGRMEDARKAFESLFE-------K--NLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGA 504 (861)
Q Consensus 434 ~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 504 (861)
--.|.+++|.-.-.+-.. + ....+..+...|...|+.-.-. --.+.|-.++.++- .
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~----~pee~g~f~~ev~~-----------a 170 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE----APEEKGAFNAEVTS-----------A 170 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC----ChhhcccccHHHHH-----------H
Confidence 445666666544332210 0 1112333444444333211000 00011212222210 1
Q ss_pred hHHHHHHHH----HHHHhCCC-CchhHHHHHHHHHHccCCHHHHHHHHHhcc-------C--CCchHHHHHHHHHHhcCC
Q 002975 505 IGKGEQIHA----RIIKSGFE-SNHCIYNALISMYSRCANVEAAFQVFKEME-------D--RNVISWTSMITGFAKHGF 570 (861)
Q Consensus 505 ~~~a~~~~~----~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~--~~~~~~~~li~~~~~~g~ 570 (861)
++.|.++|. .+.+.|-. .-...|..|.+.|--.|+++.|+..-+.-. + .....+..+..++.-.|+
T Consensus 171 l~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 171 LENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc
Confidence 122222221 11111100 112345566666666777777766554322 1 122456677777888888
Q ss_pred hHHHHHHHHHHHH----cCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHH
Q 002975 571 AARALEIFYKMLA----DGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEA 645 (861)
Q Consensus 571 ~~~A~~~~~~m~~----~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA 645 (861)
++.|++.|+.-.. .|-+. ...+..+|..+|.-...++.|+.++.+-.. -|
T Consensus 251 fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLa-------------------------IA 305 (639)
T KOG1130|consen 251 FELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLA-------------------------IA 305 (639)
T ss_pred cHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-------------------------HH
Confidence 8888887776543 22111 123455566677666677777777654331 11
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcc-----CCC-CCchHHHHHHHHHHcCChh
Q 002975 646 LEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQ-----DPQ-DPAAHILLSNLYASAGHWE 709 (861)
Q Consensus 646 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~-~~~~~~~L~~~y~~~g~~~ 709 (861)
.++=+.+. ....+-+|..++...|+.+.|...+++.+++ +|. ...+.+.|++.-...|.-+
T Consensus 306 qeL~DriG---e~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 306 QELEDRIG---ELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQED 372 (639)
T ss_pred HHHHHhhh---hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCc
Confidence 11111111 2234457777777777777777777766652 222 2345556677666666544
No 217
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.98 E-value=1.8 Score=42.57 Aligned_cols=193 Identities=19% Similarity=0.147 Sum_probs=129.6
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHhcc-----CCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 002975 524 HCIYNALISMYSRCANVEAAFQVFKEME-----DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLS 598 (861)
Q Consensus 524 ~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 598 (861)
...+......+...+.+..+...+.... ......+..+...+...+++.+++..+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 4556666677777777777777776653 23344555666666777777888888887777433331 22222222
Q ss_pred -HHHhcCCHHHHHHHHHHHHhhcCCCC----ChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHH
Q 002975 599 -ACSHAGLISEGWKHFRSMYDEHGIVQ----RMEHYACMVDLLGRSGSLTEALEFIRSMP-LSAD--VLVWRTFLGACRV 670 (861)
Q Consensus 599 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~--~~~~~~ll~~~~~ 670 (861)
++...|.++++...+..... ..| ....+......+...++.++|...+.+.. ..++ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 67778888888888887742 222 23333344444667788888888887763 2333 5677778888888
Q ss_pred hCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 671 HGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 671 ~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
.++.+.+...+..+++..|.....+..++..+...|.++++.........
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88889999999999988888666777777777777778888877766554
No 218
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.85 E-value=3.9 Score=45.33 Aligned_cols=273 Identities=11% Similarity=0.130 Sum_probs=132.0
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCC----hhhHHHHHHHhcccCChHHHHHHHH
Q 002975 337 VDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPN----HFTFASVLKACGNLLDSNVAEQVYT 412 (861)
Q Consensus 337 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~~~~~~a~~i~~ 412 (861)
+++|++++-++..+|.. |..+.+-|+ +-...++++. .|-..| ...++.+-..++....++.|.+.+.
T Consensus 750 feeaek~yld~drrDLA-----ielr~klgD-wfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRRDLA-----IELRKKLGD-WFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hhHhhhhhhccchhhhh-----HHHHHhhhh-HHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888777666542 333444444 4444444322 111111 2345555556666666666666665
Q ss_pred HHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHH
Q 002975 413 HAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTF 492 (861)
Q Consensus 413 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 492 (861)
.-... ...+++|.+..++++-+.+-+.+++. ....-.|.+.+...|..++|.+.|-+-.. |
T Consensus 821 ~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p----- 881 (1189)
T KOG2041|consen 821 YCGDT---------ENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRRSL----P----- 881 (1189)
T ss_pred hccch---------HhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhccC----c-----
Confidence 43221 23555666666666655555555443 33445566667777777776665543221 1
Q ss_pred HHHHHHhhcccchHHHHHHHHHHHHh-----------CCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCC---chHH
Q 002975 493 ASLLSGASSIGAIGKGEQIHARIIKS-----------GFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRN---VISW 558 (861)
Q Consensus 493 ~~ll~a~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~ 558 (861)
...+.+|..+.++.+|.++-+...-. .+-.+..+ .--|.++.+.|+.=+|.+++.+|.++. -+.|
T Consensus 882 kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~-~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~ 960 (1189)
T KOG2041|consen 882 KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANH-MEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPY 960 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcch-HHHHHHhhhcccchhHHHHHHHHhHHHhhccCCH
Confidence 13345666666666665554322100 00000011 123566777777777777776665321 1112
Q ss_pred HHHHHHHH----hcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 002975 559 TSMITGFA----KHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVD 634 (861)
Q Consensus 559 ~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 634 (861)
--+=..|. -..+..++++-.++....|...|... +...|...++-++.+.... -....|+-.|..
T Consensus 961 lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr----gAEAyHFmilAQ 1029 (1189)
T KOG2041|consen 961 LRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR----GAEAYHFMILAQ 1029 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh----hHHHHHHHHHHH
Confidence 21111111 12234445555555555554333221 1223334444444432220 112334444555
Q ss_pred HhhhcCCHHHHHHHH
Q 002975 635 LLGRSGSLTEALEFI 649 (861)
Q Consensus 635 ~~~r~g~~~eA~~~~ 649 (861)
-..+.|..+.|+..-
T Consensus 1030 rql~eg~v~~Al~Ta 1044 (1189)
T KOG2041|consen 1030 RQLFEGRVKDALQTA 1044 (1189)
T ss_pred HHHHhchHHHHHHHH
Confidence 566788888887654
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.70 E-value=0.017 Score=45.97 Aligned_cols=60 Identities=13% Similarity=0.125 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcc----CCC---CCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 002975 660 VWRTFLGACRVHGDTELGKHAAEMILEQ----DPQ---DPAAHILLSNLYASAGHWEYVANIRKRMK 719 (861)
Q Consensus 660 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~L~~~y~~~g~~~~a~~~~~~m~ 719 (861)
+++.+...++..|++++|+..+++++++ .++ -..++..++.+|...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566666677777777777777776653 111 24567788888888999888888877653
No 220
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.63 E-value=0.21 Score=50.47 Aligned_cols=222 Identities=16% Similarity=0.082 Sum_probs=97.2
Q ss_pred HhcCChhHHHHHHHHHhhcC--CCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHh--CCCCc---hhHHHHHHHHHHcc
Q 002975 465 AKNLNSEKAFELLHEIEDTG--VGTSAYTFASLLSGASSIGAIGKGEQIHARIIKS--GFESN---HCIYNALISMYSRC 537 (861)
Q Consensus 465 ~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~li~~y~~~ 537 (861)
.+..+.++|+..+.+-...- ..---.+|..+..+.++.|..+++...-.-.+.. ..+.. ...|-.|...+-+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777666654321 1112235555556666666665554432221111 11111 12223333344443
Q ss_pred CCHHHHHHHHHhccC-C------C-chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-C----hHHHHHHHHHHHhcC
Q 002975 538 ANVEAAFQVFKEMED-R------N-VISWTSMITGFAKHGFAARALEIFYKMLADGIKP-N----GITYIAVLSACSHAG 604 (861)
Q Consensus 538 g~~~~A~~~~~~~~~-~------~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~----~~t~~~ll~a~~~~g 604 (861)
-++.+++.+-+.-.. | + -...-+|..++.-.+.++++++.|+...+.--.. | -..+..|.+-|....
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 444444443332210 1 0 0122234445555555666666666655421111 1 224556666666666
Q ss_pred CHHHHHHHHHHHH---hhcCCCCChhHHHHH-----HHHhhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHH
Q 002975 605 LISEGWKHFRSMY---DEHGIVQRMEHYACM-----VDLLGRSGSLTEALEFIRSM-------PLSA-DVLVWRTFLGAC 668 (861)
Q Consensus 605 ~~~~a~~~~~~m~---~~~~~~p~~~~~~~l-----~~~~~r~g~~~eA~~~~~~~-------~~~p-~~~~~~~ll~~~ 668 (861)
++++|.-+..... ..+++..-..-|.++ ...|...|.+-+|.+.-++. ...+ .+.....+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 6666655444332 233333322223322 22444455555444444432 1111 123344455556
Q ss_pred HHhCCHHHHHHHHHHHhc
Q 002975 669 RVHGDTELGKHAAEMILE 686 (861)
Q Consensus 669 ~~~g~~~~a~~~~~~~~~ 686 (861)
+..|+.|.|..-|+++..
T Consensus 257 R~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HhcccHhHHHHHHHHHHH
Confidence 666666666555555543
No 221
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.53 E-value=1.2 Score=38.28 Aligned_cols=140 Identities=16% Similarity=0.110 Sum_probs=78.0
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHH
Q 002975 566 AKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEA 645 (861)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA 645 (861)
.-.|..++..++..+...+. +..-++-++--...+-+-+-..+.++.+-+-+.+. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 34577777788877776642 11122222221112222333344444443322222 34444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 002975 646 LEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLI 724 (861)
Q Consensus 646 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~ 724 (861)
...+-.+. -+....+-.+++....|..+.-.+++..+++-+..+|...+-++++|.+.|...++.+++++.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44444431 122334556777889999999999999999877778899999999999999999999999999998875
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.37 E-value=0.025 Score=45.05 Aligned_cols=30 Identities=13% Similarity=-0.028 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Q 002975 658 VLVWRTFLGACRVHGDTELGKHAAEMILEQ 687 (861)
Q Consensus 658 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 687 (861)
..++..+...+...|+.+.|+..+++++++
T Consensus 46 a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 46 ANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345566666677777777777777766553
No 223
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.28 E-value=0.95 Score=48.36 Aligned_cols=103 Identities=15% Similarity=0.187 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCC--HHHHHHHHHH
Q 002975 592 TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSAD--VLVWRTFLGA 667 (861)
Q Consensus 592 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~--~~~~~~ll~~ 667 (861)
+-..+..++-+.|+.+||.+.|++|.+++...........|+..|...+.+.++..++.+.. .-|+ ...|++.+-.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 33457777889999999999999998666544455567779999999999999999999875 1233 3466665545
Q ss_pred HHHhCCH---------------HHHHHHHHHHhccCCCCCch
Q 002975 668 CRVHGDT---------------ELGKHAAEMILEQDPQDPAA 694 (861)
Q Consensus 668 ~~~~g~~---------------~~a~~~~~~~~~~~p~~~~~ 694 (861)
.+..++. ..|.++..++++.||.-+..
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 5555541 23567889999999987644
No 224
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.28 E-value=4.8 Score=42.55 Aligned_cols=72 Identities=14% Similarity=0.147 Sum_probs=59.9
Q ss_pred HHHHHhCCCCC----CHHHHHHHHHH--HHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 646 LEFIRSMPLSA----DVLVWRTFLGA--CRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 646 ~~~~~~~~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
++++++....| +..+-|.|..| ...+|++.++.....-+.++.| ++.+|.++|-+.....+++||...+..+
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 44555555444 44566777776 6789999999999999999999 9999999999999999999999998855
No 225
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.23 E-value=0.34 Score=44.14 Aligned_cols=71 Identities=20% Similarity=0.304 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHH----hhcCCCCChhHH
Q 002975 557 SWTSMITGFAKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMY----DEHGIVQRMEHY 629 (861)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~~ 629 (861)
....++..+...|++++|+.+.+++.. ..| |...+..++.++...|+..+|.+.|+.+. ++.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 445567778889999999999999998 455 57789999999999999999999988774 367888887643
No 226
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.19 E-value=2.2 Score=41.41 Aligned_cols=161 Identities=16% Similarity=0.156 Sum_probs=88.5
Q ss_pred HHHHccCCHHHHHHHHHhccC--CC----chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--HHHHHHHHHHHhc
Q 002975 532 SMYSRCANVEAAFQVFKEMED--RN----VISWTSMITGFAKHGFAARALEIFYKMLADGIKPNG--ITYIAVLSACSHA 603 (861)
Q Consensus 532 ~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~ 603 (861)
..+...|++++|.+.|+.+.. |+ ..+.-.++.++.+.|++++|+..|++.++. -|+. .-+...+.+.+..
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHH
Confidence 344566777777777777663 22 124445667777778888888888887763 3431 2222222222211
Q ss_pred -------------CCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHH
Q 002975 604 -------------GLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVW--RTFLGAC 668 (861)
Q Consensus 604 -------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~--~~ll~~~ 668 (861)
+...+|...|+.+.+. |-......+|...+..+. +...- -.+..-|
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~~----------------yP~S~y~~~A~~~l~~l~---~~la~~e~~ia~~Y 151 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELIKR----------------YPNSEYAEEAKKRLAELR---NRLAEHELYIARFY 151 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHHHH-----------------TTSTTHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHHHHH----------------CcCchHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 1123444444444433 333333444444333321 00111 1234557
Q ss_pred HHhCCHHHHHHHHHHHhccCCCCCc---hHHHHHHHHHHcCChhHHHH
Q 002975 669 RVHGDTELGKHAAEMILEQDPQDPA---AHILLSNLYASAGHWEYVAN 713 (861)
Q Consensus 669 ~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~L~~~y~~~g~~~~a~~ 713 (861)
.+.|.+.-|..-++.+++..|+... +...|...|.+.|..+.+..
T Consensus 152 ~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 8889999999999999999998654 45678889999999885443
No 227
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.03 E-value=0.28 Score=42.96 Aligned_cols=48 Identities=17% Similarity=0.148 Sum_probs=26.8
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHH
Q 002975 586 IKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMV 633 (861)
Q Consensus 586 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 633 (861)
..|+..+..+++.+++..|++..|.++.+...+.|+++-+...|..|+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 445555666666666666666666666666655555544444444443
No 228
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.00 E-value=0.27 Score=52.24 Aligned_cols=70 Identities=17% Similarity=0.095 Sum_probs=56.1
Q ss_pred CCCCCCcchHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCCcchhHHHHHHHHHc
Q 002975 38 AQPTTSEPLSNRLIYHLNDGRVQKAIFTLDLMTQKGNHPDL--DTYSLLLKSCIRSRNFHLGKLVHSLLTRS 107 (861)
Q Consensus 38 ~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 107 (861)
..|..+..+.+....+...|++++|+..|++..+.+..... .+|..+..++...|++++|...+..+++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34555556677777999999999999999998887533221 45888999999999999999999998875
No 229
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.98 E-value=0.87 Score=48.61 Aligned_cols=190 Identities=16% Similarity=0.121 Sum_probs=109.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHH--
Q 002975 566 AKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLT-- 643 (861)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~-- 643 (861)
-+..+.+.-+++-++.++ +.||-.+-..++ +-.....+.++.++|++..+... ..|++....+
T Consensus 179 WRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE------------~~lg~s~~~~~~ 243 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE------------ASLGKSQFLQHH 243 (539)
T ss_pred HhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH------------Hhhchhhhhhcc
Confidence 345566777777777777 678755433332 33345568888888888763210 0111111010
Q ss_pred -HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC--CCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 644 -EALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ--DPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 644 -eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
...+.+..-...+-..+-..|...+++.|+.++|++.++.+++..|. +-+.+..|.+.+-..+++.|+..+..+-.+
T Consensus 244 g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 244 GHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred cchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 01111111112223344455777888999999999999999987775 456788999999999999999999888765
Q ss_pred CCCccCCceeEEEeCCeEEEE-EeCCCCCCCh-------HHHHHHHHHHHHHHHhcCcccC
Q 002975 721 RNLIKEAGCSWIEADNKVHKF-HVGETSHPKT-------LEIYAELDQLALKIKEFGYLPD 773 (861)
Q Consensus 721 ~~~~~~~~~s~i~~~~~~~~f-~~~~~~~~~~-------~~i~~~l~~l~~~~~~~g~~~~ 773 (861)
..+.|....+|... .-.| ..||+..|+. ......++-+.+.++.--++|+
T Consensus 324 i~lpkSAti~YTaA---LLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 324 ISLPKSATICYTAA---LLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred ccCCchHHHHHHHH---HHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 55555554443210 0001 1233332321 1222345566667776677775
No 230
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=0.23 Score=51.41 Aligned_cols=137 Identities=15% Similarity=0.018 Sum_probs=93.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCC
Q 002975 562 ITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGS 641 (861)
Q Consensus 562 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~ 641 (861)
.+.|.+.|++..|...|++.... -... ..-..++...... .....+..+.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~--l~~~-----------~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF--LEYR-----------RSFDEEEQKKAEA---------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH--hhcc-----------ccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhh
Confidence 56778888888888888887652 1100 0011122211111 112234556667778888
Q ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHH-HHHHHHH
Q 002975 642 LTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYV-ANIRKRM 718 (861)
Q Consensus 642 ~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a-~~~~~~m 718 (861)
+.+|++.-++.. .++|+-..--=..+|...|+++.|+..++++++++|+|-.+...|+.+-.+..+..+. .+++..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887777652 3445556666678899999999999999999999999999999998888877777665 6778877
Q ss_pred Hh
Q 002975 719 KE 720 (861)
Q Consensus 719 ~~ 720 (861)
-.
T Consensus 353 F~ 354 (397)
T KOG0543|consen 353 FA 354 (397)
T ss_pred hh
Confidence 54
No 231
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.96 E-value=0.044 Score=35.17 Aligned_cols=33 Identities=24% Similarity=0.190 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Q 002975 659 LVWRTFLGACRVHGDTELGKHAAEMILEQDPQD 691 (861)
Q Consensus 659 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 691 (861)
.+|..++..+...|+++.|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 478888999999999999999999999999964
No 232
>PRK11906 transcriptional regulator; Provisional
Probab=94.95 E-value=1.1 Score=47.78 Aligned_cols=142 Identities=13% Similarity=0.084 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHHH-cCCCCCh-HHHHHHHHHHHh---------cCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhh
Q 002975 571 AARALEIFYKMLA-DGIKPNG-ITYIAVLSACSH---------AGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGR 638 (861)
Q Consensus 571 ~~~A~~~~~~m~~-~g~~p~~-~t~~~ll~a~~~---------~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r 638 (861)
.+.|+.+|.+... +.+.|+- ..|..+..++.. .....+|.++-+... .+.| |......+..+++-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHh
Confidence 4567777877772 1256663 334333332211 123445555555555 3344 34455555666667
Q ss_pred cCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHH--HHHHHHHHcCChhHHHHH
Q 002975 639 SGSLTEALEFIRSMP-LSAD-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHI--LLSNLYASAGHWEYVANI 714 (861)
Q Consensus 639 ~g~~~eA~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~--~L~~~y~~~g~~~~a~~~ 714 (861)
.|+++.|..+|++.. ..|| +.+|......+.-.|+.+.|....+++++++|.-..+-+ ...++|+..+ .++|.++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 777888888888863 5665 567877888888889999999999999999998665544 3334565544 5566665
Q ss_pred HH
Q 002975 715 RK 716 (861)
Q Consensus 715 ~~ 716 (861)
+-
T Consensus 430 ~~ 431 (458)
T PRK11906 430 YY 431 (458)
T ss_pred Hh
Confidence 43
No 233
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.95 E-value=1.5 Score=42.52 Aligned_cols=51 Identities=25% Similarity=0.260 Sum_probs=27.9
Q ss_pred HHHcCCHHHHHHHHHhcCC--CC----eehHHHHHHHHHhcCChhHHHHHHHHHhhc
Q 002975 433 YARSGRMEDARKAFESLFE--KN----LVSYNTMVDAYAKNLNSEKAFELLHEIEDT 483 (861)
Q Consensus 433 ~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 483 (861)
+...|++++|.+.|+.+.. |+ ....-.++.++-+.|++++|...+++..+.
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455666666666666532 11 123444566666777777777777776654
No 234
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.86 E-value=4.3 Score=39.79 Aligned_cols=197 Identities=17% Similarity=0.133 Sum_probs=127.0
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--CCc-hHHHHHHH-
Q 002975 489 AYTFASLLSGASSIGAIGKGEQIHARIIKS-GFESNHCIYNALISMYSRCANVEAAFQVFKEMED--RNV-ISWTSMIT- 563 (861)
Q Consensus 489 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~- 563 (861)
...+......+...+.+..+...+...... ........+..+...+...+.++.+.+.+..... ++. ..+.....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 344444455555555555555555544432 2234445555666666666777777777776654 221 22333333
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC--ChhHHHHHHHHhh
Q 002975 564 GFAKHGFAARALEIFYKMLADGIKP----NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ--RMEHYACMVDLLG 637 (861)
Q Consensus 564 ~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~l~~~~~ 637 (861)
.+...|++++|...|++... ..| ....+......+...+..+++...+..... ..+ ....+..+...+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 213 (291)
T COG0457 139 ALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK---LNPDDDAEALLNLGLLYL 213 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh---hCcccchHHHHHhhHHHH
Confidence 67788888888888888865 333 233444444456677888888888888773 233 3566777778888
Q ss_pred hcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Q 002975 638 RSGSLTEALEFIRSMP-LSAD-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ 690 (861)
Q Consensus 638 r~g~~~eA~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 690 (861)
..+++++|...+.... ..|+ ...+..+...+...++.+.+...+++.++..|.
T Consensus 214 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8888888888887763 3443 455666666666667899999999999999987
No 235
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.77 E-value=0.072 Score=34.07 Aligned_cols=33 Identities=27% Similarity=0.261 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Q 002975 659 LVWRTFLGACRVHGDTELGKHAAEMILEQDPQD 691 (861)
Q Consensus 659 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 691 (861)
..|..+...+...|+++.|+..++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467778888899999999999999999999875
No 236
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.72 E-value=6.9 Score=41.47 Aligned_cols=381 Identities=12% Similarity=0.054 Sum_probs=194.2
Q ss_pred HhcCCchHHHHHHHHHHHC--CCCC------------CcccHHHHHHHHhccCCchHHHHHHHHHHHhCC----CCccch
Q 002975 259 TQLGCPRDAIRLFLDMILS--GFLP------------DRFTLSGVVSACSELELFTSGKQLHSWAIRTGL----ALDVCV 320 (861)
Q Consensus 259 ~~~g~~~~A~~l~~~m~~~--g~~p------------d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~----~~~~~~ 320 (861)
-+.+.+.+|++.+..-... +-.| |-.-=+....++...|.+.+|+.++..++..=+ ..+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 3566677777766655443 2211 111122344566788888888888887776544 478888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcc
Q 002975 321 GCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGN 400 (861)
Q Consensus 321 ~~~li~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 400 (861)
|+.++-++++.=- ++ +-+.+...=...|--||..|.+.=. .- +.-.=..+.|-...+..++....-
T Consensus 170 yd~~vlmlsrSYf---LE----l~e~~s~dl~pdyYemilfY~kki~-~~------d~~~Y~k~~peeeL~s~imqhlfi 235 (549)
T PF07079_consen 170 YDRAVLMLSRSYF---LE----LKESMSSDLYPDYYEMILFYLKKIH-AF------DQRPYEKFIPEEELFSTIMQHLFI 235 (549)
T ss_pred HHHHHHHHhHHHH---HH----HHHhcccccChHHHHHHHHHHHHHH-HH------hhchHHhhCcHHHHHHHHHHHHHh
Confidence 8888877776321 11 1111111112345556666554321 10 100001133444444444443321
Q ss_pred --cCChHHHHHHHHHHHHcCCCCCc-chhhHHHHHHHHcCCHHHHHHHHHhc--------CCCCeehHHHHHHHHHhcCC
Q 002975 401 --LLDSNVAEQVYTHAVKRGRALDD-CVGNSLISMYARSGRMEDARKAFESL--------FEKNLVSYNTMVDAYAKNLN 469 (861)
Q Consensus 401 --~~~~~~a~~i~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~li~~~~~~g~ 469 (861)
...+.--.+++......-+.|+- -+...|+.-+.+ +.+++..+-+.+ .+.=+.++..++....+.++
T Consensus 236 ~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~ 313 (549)
T PF07079_consen 236 VPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQ 313 (549)
T ss_pred CCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12233334444444444444432 233344444443 344444433333 12233567788888888888
Q ss_pred hhHHHHHHHHHhhcCCCCCHHHH-------HHHHHHhh-ccc---chHHHHHHHHHHHHhCCCCchhHHHHHH---HHHH
Q 002975 470 SEKAFELLHEIEDTGVGTSAYTF-------ASLLSGAS-SIG---AIGKGEQIHARIIKSGFESNHCIYNALI---SMYS 535 (861)
Q Consensus 470 ~~~A~~l~~~m~~~g~~p~~~t~-------~~ll~a~~-~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li---~~y~ 535 (861)
..+|-+.+.-+... .|+...- ..+.+..+ ... ++..-..++..+....+..- .....|+ .-|-
T Consensus 314 T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW 390 (549)
T PF07079_consen 314 TEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLW 390 (549)
T ss_pred HHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHH
Confidence 88888877766532 3332211 11111111 111 22222333333333322111 1111111 2333
Q ss_pred ccCC-HHHHHHHHHhccC---CCchHHHHHH----HHHHhc---CChHHHHHHHHHHHHcCCCCChH----HHHHHHHH-
Q 002975 536 RCAN-VEAAFQVFKEMED---RNVISWTSMI----TGFAKH---GFAARALEIFYKMLADGIKPNGI----TYIAVLSA- 599 (861)
Q Consensus 536 ~~g~-~~~A~~~~~~~~~---~~~~~~~~li----~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a- 599 (861)
+.|. -++|..+++.+.+ -|..+-|... .+|.+. ....+-+.+-+-..+.|+.|-.+ .-+.|..|
T Consensus 391 ~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAE 470 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAE 470 (549)
T ss_pred hcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHH
Confidence 4454 6778888887763 4544444322 233321 22344445555556678777433 22333333
Q ss_pred -HHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 002975 600 -CSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRT 663 (861)
Q Consensus 600 -~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ 663 (861)
+...|++.++.-+-..+. .+.|++.+|.-+.-.+....+++||.+++...| |+..+|++
T Consensus 471 yLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 456788888876655554 678899999888888888899999999999874 46566655
No 237
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.71 E-value=13 Score=44.53 Aligned_cols=160 Identities=16% Similarity=0.215 Sum_probs=86.1
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHH
Q 002975 337 VDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVK 416 (861)
Q Consensus 337 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 416 (861)
++.|+.-+.++. ...|+-.+.---+++. +.+|+.++ +|+...+..+..+|+.. +.+
T Consensus 896 y~~AL~hLs~~~---~~~~~e~~n~I~kh~L-y~~aL~ly--------~~~~e~~k~i~~~ya~h------------L~~ 951 (1265)
T KOG1920|consen 896 YEDALSHLSECG---ETYFPECKNYIKKHGL-YDEALALY--------KPDSEKQKVIYEAYADH------------LRE 951 (1265)
T ss_pred HHHHHHHHHHcC---ccccHHHHHHHHhccc-chhhhhee--------ccCHHHHHHHHHHHHHH------------HHH
Confidence 455544444332 2223333333334455 66666663 57777776666555431 111
Q ss_pred cCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHH--HHH
Q 002975 417 RGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYT--FAS 494 (861)
Q Consensus 417 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ 494 (861)
...++-..-+|.++|+.++|.+. |..+|++.+|+.+-.+|.. .-|... -..
T Consensus 952 ------~~~~~~Aal~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~ 1004 (1265)
T KOG1920|consen 952 ------ELMSDEAALMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSE---GKDELVILAEE 1004 (1265)
T ss_pred ------hccccHHHHHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcC---CHHHHHHHHHH
Confidence 11233345567788888887554 4446778888887776642 122221 134
Q ss_pred HHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCc
Q 002975 495 LLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNV 555 (861)
Q Consensus 495 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~ 555 (861)
|..-+...++.-+|-++....... ..-.+..|++...+++|..+.......|.
T Consensus 1005 L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~~~d~ 1057 (1265)
T KOG1920|consen 1005 LVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAKRDDI 1057 (1265)
T ss_pred HHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcccchH
Confidence 455555666666665555443221 12345667777788888877666554443
No 238
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.63 E-value=0.47 Score=41.55 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=41.4
Q ss_pred hcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHhC
Q 002975 619 EHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM----PLSADVLVWRTFLGACRVHG 672 (861)
Q Consensus 619 ~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~----~~~p~~~~~~~ll~~~~~~g 672 (861)
...+.|+.....+++.+|+..|++..|+++++.. +.+-+..+|..|+.-+...-
T Consensus 45 ~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 45 SSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred CCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 4456788888999999999999999998887765 35556788988887665544
No 239
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.54 E-value=11 Score=43.12 Aligned_cols=177 Identities=10% Similarity=0.070 Sum_probs=102.8
Q ss_pred hHHHHHHHhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH----HhcCCcchhHHHHHHHHHcCCCCCcchHHHHHH
Q 002975 46 LSNRLIYHLNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSC----IRSRNFHLGKLVHSLLTRSKLEPNSVILNSLIS 121 (861)
Q Consensus 46 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 121 (861)
+.+.+--..+...+..|+.+-... ..|..+...+.+.| -+.|++++|...|-+.+.. ++ -..+|.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~-----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le-----~s~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ-----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LE-----PSEVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CC-----hHHHHH
Confidence 344555667778888888765432 23444444444443 4568888887665554321 12 234555
Q ss_pred HHhcCCChHHHHHHHHhcCC--CCCceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhh
Q 002975 122 LYSKCGDLNEANKIFKSMGN--KRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIG 199 (861)
Q Consensus 122 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 199 (861)
-|....+...-...++.+.. -.+...-..|+.+|.+.++.++-.++.+.-. .|.. .+-+...+..|.+.+-.+.|
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 56555555555556665521 1455556778888888888887666555433 2222 22355667777666666665
Q ss_pred hhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCCC
Q 002975 200 HIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEK 246 (861)
Q Consensus 200 ~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~~ 246 (861)
.-+-... .....+...++.- .+++++|.+.+..++-+
T Consensus 483 ~~LA~k~------~~he~vl~ille~----~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 483 ELLATKF------KKHEWVLDILLED----LHNYEEALRYISSLPIS 519 (933)
T ss_pred HHHHHHh------ccCHHHHHHHHHH----hcCHHHHHHHHhcCCHH
Confidence 5443322 2234444555443 56799999999998853
No 240
>PRK11906 transcriptional regulator; Provisional
Probab=94.51 E-value=0.6 Score=49.74 Aligned_cols=115 Identities=10% Similarity=0.008 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHhhcCCCCChh-HHHHHHHHhh---------hcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCC
Q 002975 606 ISEGWKHFRSMYDEHGIVQRME-HYACMVDLLG---------RSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGD 673 (861)
Q Consensus 606 ~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~~~---------r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~ 673 (861)
.+.|..+|.+......+.|+-. .|..+...+. ......+|.++.++.. .+-|+.....+..+....++
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 5678888888876667777643 3333322211 2334667777777663 34477788788888888888
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 674 TELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 674 ~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
.+.|...++++..++|+.+.++...+.+..-.|+.++|.+..++..+
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999998887544
No 241
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.41 E-value=2.6 Score=46.79 Aligned_cols=114 Identities=13% Similarity=0.049 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHHHHhhcCCCCChhHHHHH-HHHhhhcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHHHhCCHHH
Q 002975 604 GLISEGWKHFRSMYDEHGIVQRMEHYACM-VDLLGRSGSLTEALEFIRSMPL------SADVLVWRTFLGACRVHGDTEL 676 (861)
Q Consensus 604 g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-~~~~~r~g~~~eA~~~~~~~~~------~p~~~~~~~ll~~~~~~g~~~~ 676 (861)
...+.+.++++.+.+.| |+...|... ..++...|++++|++.|+++.. +-....+--+.+.+...+++++
T Consensus 247 ~~~~~a~~lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 34555666666655333 444333322 3355556666666666665421 1123444556677778889999
Q ss_pred HHHHHHHHhccCCCCCchHH-HHHHHHHHcCCh-------hHHHHHHHHHHh
Q 002975 677 GKHAAEMILEQDPQDPAAHI-LLSNLYASAGHW-------EYVANIRKRMKE 720 (861)
Q Consensus 677 a~~~~~~~~~~~p~~~~~~~-~L~~~y~~~g~~-------~~a~~~~~~m~~ 720 (861)
|...+.++.+.+.-....|. ..+-+|...|+. ++|.++++++..
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99999999987766555554 667788888888 777777776654
No 242
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=1.2 Score=44.64 Aligned_cols=102 Identities=18% Similarity=0.121 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhh---cCCHHHHHHHHHhCC-CCC-CHHHHHHH
Q 002975 590 GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGR---SGSLTEALEFIRSMP-LSA-DVLVWRTF 664 (861)
Q Consensus 590 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r---~g~~~eA~~~~~~~~-~~p-~~~~~~~l 664 (861)
...|..|..+|...|+.+.|...|....+-.|- +.+.+..+...+.. .....++.++|+++. ..| |.....-|
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~--n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRLAGD--NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 445555555555555555555555554422222 22223333332221 113445566666652 344 44455556
Q ss_pred HHHHHHhCCHHHHHHHHHHHhccCCCCCc
Q 002975 665 LGACRVHGDTELGKHAAEMILEQDPQDPA 693 (861)
Q Consensus 665 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 693 (861)
...+...|++.+|...++++++..|.+..
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 66788889999999999999988776543
No 243
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.18 E-value=4.8 Score=42.40 Aligned_cols=71 Identities=17% Similarity=0.094 Sum_probs=42.9
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCC---Cee----hHHHHHHHHHh---cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 002975 429 LISMYARSGRMEDARKAFESLFEK---NLV----SYNTMVDAYAK---NLNSEKAFELLHEIEDTGVGTSAYTFASLLSG 498 (861)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~~~~~---~~~----~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 498 (861)
++-.|-...+++...++.+.+... ++. .--...-++.+ .|+.++|++++..+....-.++..||..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 334466666777777777766443 111 11122334445 67888888888886666667777777766655
Q ss_pred h
Q 002975 499 A 499 (861)
Q Consensus 499 ~ 499 (861)
|
T Consensus 227 y 227 (374)
T PF13281_consen 227 Y 227 (374)
T ss_pred H
Confidence 4
No 244
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.14 E-value=0.31 Score=45.08 Aligned_cols=89 Identities=15% Similarity=0.089 Sum_probs=68.4
Q ss_pred HHhhhcCCHHHHHHHHHhCC--CCC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC
Q 002975 634 DLLGRSGSLTEALEFIRSMP--LSA-----DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAG 706 (861)
Q Consensus 634 ~~~~r~g~~~eA~~~~~~~~--~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g 706 (861)
+-+...|++++|..-+..+. .++ ..+.|..-..+..+.+..+.|+...-++++++|.+..+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 34456677777766665541 122 23455555566778899999999999999999999889888899999999
Q ss_pred ChhHHHHHHHHHHhCC
Q 002975 707 HWEYVANIRKRMKERN 722 (861)
Q Consensus 707 ~~~~a~~~~~~m~~~~ 722 (861)
++++|.+-++++.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999998743
No 245
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.08 E-value=2.1 Score=38.54 Aligned_cols=120 Identities=18% Similarity=0.242 Sum_probs=60.4
Q ss_pred HHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Q 002975 530 LISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLI 606 (861)
Q Consensus 530 li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 606 (861)
++..+.+.+.......+++.+.. .+....|.++..|++.+ ..+.++.++. .++......++..|.+.+.+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcH
Confidence 33444444444444444444332 12334455555555443 2333333331 12333344466667777777
Q ss_pred HHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 002975 607 SEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRS-GSLTEALEFIRSMPLSADVLVWRTFLGACR 669 (861)
Q Consensus 607 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~-g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~ 669 (861)
+++..++..+.. +...++.+... ++.+.|.+++++- .++..|..++..|.
T Consensus 86 ~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l 136 (140)
T smart00299 86 EEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 777776665431 12233434333 6777777777763 25567777776654
No 246
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.89 E-value=0.39 Score=47.26 Aligned_cols=64 Identities=14% Similarity=0.222 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC---CchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 655 SADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD---PAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 655 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
.|++.-| |+.++...|+++.|...|..+.+-.|++ +..+.-|+.+..+.|+.++|..++..+-+
T Consensus 177 ~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 177 TPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred cchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3444444 5566666666666666666666655543 34456666666666666666666665543
No 247
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.61 E-value=17 Score=41.78 Aligned_cols=121 Identities=17% Similarity=0.163 Sum_probs=73.6
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHhcCCCCCce--eHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhcC
Q 002975 115 ILNSLISLYSKCGDLNEANKIFKSMGNKRDIV--SWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSN 192 (861)
Q Consensus 115 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 192 (861)
....-|+.+.+-.-++.|..+-+.-...++.. .......-+.+.|++++|...|-+-... +.| +.+++-+-.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLD 409 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcC
Confidence 44566777788888888888876654422221 1222333445688999998888776532 233 345555655
Q ss_pred CcchhhhhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCC
Q 002975 193 TENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMT 244 (861)
Q Consensus 193 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~ 244 (861)
......-...++.+.+.| -.+...-+.|+..|.| .++.+.-.+..+...
T Consensus 410 aq~IknLt~YLe~L~~~g--la~~dhttlLLncYiK-lkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKG--LANSDHTTLLLNCYIK-LKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHHHcc--cccchhHHHHHHHHHH-hcchHHHHHHHhcCC
Confidence 555556666677777777 2334445667777777 666666555555443
No 248
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.56 E-value=5.6 Score=39.83 Aligned_cols=153 Identities=14% Similarity=0.148 Sum_probs=89.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCC
Q 002975 563 TGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGS 641 (861)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~ 641 (861)
......|++.+|..+|....+. .|+ ...-..+..++...|++++|..++..+-.+.. .........-+..+.+...
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhc
Confidence 3456778888888888888774 332 34555677778888888888888876542211 0111112234556666666
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCchHHHHHHHHHHcCChhH-HHHHHHH
Q 002975 642 LTEALEFIRSMPLSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQ--DPQDPAAHILLSNLYASAGHWEY-VANIRKR 717 (861)
Q Consensus 642 ~~eA~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~L~~~y~~~g~~~~-a~~~~~~ 717 (861)
..+..++..+....| |...--.|...+...|+.+.|...+-.+++. .-+|...-..|..++...|.-|. +.+.|++
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRk 298 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRK 298 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 665555555554455 4445555666677777777776665555553 33455666666666666664444 3334444
Q ss_pred H
Q 002975 718 M 718 (861)
Q Consensus 718 m 718 (861)
|
T Consensus 299 L 299 (304)
T COG3118 299 L 299 (304)
T ss_pred H
Confidence 3
No 249
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.53 E-value=2.3 Score=43.33 Aligned_cols=218 Identities=14% Similarity=0.140 Sum_probs=111.2
Q ss_pred HcCCHHHHHHHHHhcCCC------CeehHHHHHHHHHhcCChhHHHHHHHH-Hhhc-CCCCCH---HHHHHHHHHhhccc
Q 002975 435 RSGRMEDARKAFESLFEK------NLVSYNTMVDAYAKNLNSEKAFELLHE-IEDT-GVGTSA---YTFASLLSGASSIG 503 (861)
Q Consensus 435 ~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~-m~~~-g~~p~~---~t~~~ll~a~~~~~ 503 (861)
...+.++|+..+.+..++ -..++..+..+.+..|.+++++..--. |... ...-.. ..|..+.+++.+..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666554332 123556666677777777766553221 1110 011111 22333333444444
Q ss_pred chHHHHHHHHHHHH-hCCCC---chhHHHHHHHHHHccCCHHHHHHHHHhccC-------C--CchHHHHHHHHHHhcCC
Q 002975 504 AIGKGEQIHARIIK-SGFES---NHCIYNALISMYSRCANVEAAFQVFKEMED-------R--NVISWTSMITGFAKHGF 570 (861)
Q Consensus 504 ~~~~a~~~~~~~~~-~~~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~ 570 (861)
++.+++++-..-.. .|..+ .....-++..++.-.+.++.+++.|+...+ + ....+..|.+.|.+..+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 44444443322221 12111 112333455566666677777777775542 1 23467777777888888
Q ss_pred hHHHHHHHHHHHHc--CCCCC--hHHHHHHH-----HHHHhcCCHHHHHHHHHHHHhh---cCCCC-ChhHHHHHHHHhh
Q 002975 571 AARALEIFYKMLAD--GIKPN--GITYIAVL-----SACSHAGLISEGWKHFRSMYDE---HGIVQ-RMEHYACMVDLLG 637 (861)
Q Consensus 571 ~~~A~~~~~~m~~~--g~~p~--~~t~~~ll-----~a~~~~g~~~~a~~~~~~m~~~---~~~~p-~~~~~~~l~~~~~ 637 (861)
+++|+-+..+..+. .+..+ ...|..++ -++...|.+-.|.++.++..+- .|-.+ ......++.|.|.
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 88887766665442 12211 22344332 2456667777777777665532 12222 1123446777788
Q ss_pred hcCCHHHHHHHHHhC
Q 002975 638 RSGSLTEALEFIRSM 652 (861)
Q Consensus 638 r~g~~~eA~~~~~~~ 652 (861)
..|+.+.|+.-++.+
T Consensus 258 ~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQA 272 (518)
T ss_pred hcccHhHHHHHHHHH
Confidence 888888877766653
No 250
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.46 E-value=1.4 Score=39.06 Aligned_cols=72 Identities=15% Similarity=0.159 Sum_probs=46.6
Q ss_pred hhhcCCHHHHHHHHHhCC----CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCch---HHHHHHHHHHcCC
Q 002975 636 LGRSGSLTEALEFIRSMP----LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAA---HILLSNLYASAGH 707 (861)
Q Consensus 636 ~~r~g~~~eA~~~~~~~~----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~L~~~y~~~g~ 707 (861)
..+.|++++|.+.|+.+. ..| ....--.|+.++...|+++.|...+++.++++|.++.+ +...+-++..+..
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 335666666666666552 222 23344557888899999999999999999999987653 3344444444443
No 251
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.44 E-value=6.3 Score=38.71 Aligned_cols=54 Identities=20% Similarity=0.143 Sum_probs=31.8
Q ss_pred HHHHHhCCHHHHHHHHHHHhccCCCCCc---hHHHHHHHHHHcCChhHHHHHHHHHH
Q 002975 666 GACRVHGDTELGKHAAEMILEQDPQDPA---AHILLSNLYASAGHWEYVANIRKRMK 719 (861)
Q Consensus 666 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~L~~~y~~~g~~~~a~~~~~~m~ 719 (861)
.-|.++|.+.-|..-++.+++--|+.+. ++..|.++|...|..++|.+..+.+.
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 3455666666666666666666555443 33345556666666666666555443
No 252
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.40 E-value=2 Score=47.75 Aligned_cols=115 Identities=19% Similarity=0.164 Sum_probs=68.5
Q ss_pred cCCHHHHHHHHHhccC--CCchHHHHHH-HHHHhcCChHHHHHHHHHHHHcC--C-CCChHHHHHHHHHHHhcCCHHHHH
Q 002975 537 CANVEAAFQVFKEMED--RNVISWTSMI-TGFAKHGFAARALEIFYKMLADG--I-KPNGITYIAVLSACSHAGLISEGW 610 (861)
Q Consensus 537 ~g~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g--~-~p~~~t~~~ll~a~~~~g~~~~a~ 610 (861)
....+.|.++++.+.+ |+...|...- ..+...|+.++|++.|++..... . +.....+.-+...+....++++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 4456777788877775 6666665443 44556788888888887655311 1 112344555666677777888888
Q ss_pred HHHHHHHhhcCCCCChhHHHHH-HHHhhhcCCH-------HHHHHHHHhCC
Q 002975 611 KHFRSMYDEHGIVQRMEHYACM-VDLLGRSGSL-------TEALEFIRSMP 653 (861)
Q Consensus 611 ~~~~~m~~~~~~~p~~~~~~~l-~~~~~r~g~~-------~eA~~~~~~~~ 653 (861)
..|..+.+.....+ ..|.-+ .-.+...|+. ++|.++|++.|
T Consensus 326 ~~f~~L~~~s~WSk--a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 326 EYFLRLLKESKWSK--AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHhccccHH--HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 88887775433322 233322 2244455555 66777776654
No 253
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.37 E-value=1 Score=49.14 Aligned_cols=132 Identities=19% Similarity=0.182 Sum_probs=82.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCC
Q 002975 564 GFAKHGFAARALEIFYKMLADGIKPN--GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGS 641 (861)
Q Consensus 564 ~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~ 641 (861)
.....|+++++..+.+.-. +-|. ..-...++.-+.+.|..+.|+++-+.-. .-.++..+.|+
T Consensus 270 ~av~~~d~~~v~~~i~~~~---ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASN---LLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGN 333 (443)
T ss_dssp HHHHTT-HHH-----HHHH---TGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-
T ss_pred HHHHcCChhhhhhhhhhhh---hcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCC
Confidence 3445677777665553111 1221 2335566666777888888877654322 23467778899
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 642 LTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 642 ~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
++.|.++.++.. +...|..|...+..+||.+.|+.+++++- -+..|.-+|...|+-+.-.++.+....+
T Consensus 334 L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999888876653 67799999999999999999998888753 3566778888888887777776666654
Q ss_pred C
Q 002975 722 N 722 (861)
Q Consensus 722 ~ 722 (861)
|
T Consensus 403 ~ 403 (443)
T PF04053_consen 403 G 403 (443)
T ss_dssp T
T ss_pred c
Confidence 4
No 254
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.28 E-value=2.4 Score=37.67 Aligned_cols=112 Identities=12% Similarity=0.028 Sum_probs=53.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcC
Q 002975 564 GFAKHGFAARALEIFYKMLADGIKP---NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSG 640 (861)
Q Consensus 564 ~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g 640 (861)
...+.|++++|++.|+.+...= +. ....-..++.++...|++++|...+++.++.+.-.|++ .|.-...+++.-.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYYE 96 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHHH
Confidence 3345566666666666665531 11 12334445566666666666666666665433333332 2222222222111
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC
Q 002975 641 SLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDP 692 (861)
Q Consensus 641 ~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 692 (861)
..+ ..+..+. ..=+..+....|...++++++..|++.
T Consensus 97 ~~~---~~~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 97 QDE---GSLQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred Hhh---hHHhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 111 1111111 001122246788888899999999763
No 255
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.27 E-value=2.5 Score=42.59 Aligned_cols=147 Identities=13% Similarity=0.034 Sum_probs=71.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHH----HhhhcCCHH
Q 002975 568 HGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVD----LLGRSGSLT 643 (861)
Q Consensus 568 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~----~~~r~g~~~ 643 (861)
.|+..+|...++++++. .+.|...+.-.-.+|...|+.+.-...++++... ..++...|.-+-. .+..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 45555555555555553 3334455555555666666666555555555422 1333333332222 234566666
Q ss_pred HHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC----CCchHHHHHHHHHHcCChhHHHHHHHH
Q 002975 644 EALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ----DPAAHILLSNLYASAGHWEYVANIRKR 717 (861)
Q Consensus 644 eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~L~~~y~~~g~~~~a~~~~~~ 717 (861)
+|++.-++.. +.| |.-.-.++.......|+.+++.+..++--..--+ -.-.|-..+-.|.+.+.++.|.+++..
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 6666665542 222 2222333444455555666665554443221110 012344555556666666777666653
No 256
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.14 E-value=8.9 Score=37.16 Aligned_cols=84 Identities=13% Similarity=0.014 Sum_probs=39.2
Q ss_pred HHHHHhhhcCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHhc----cCCCCCchHHHH
Q 002975 631 CMVDLLGRSGSLTEALEFIRSMP-------LSADV-LVWRTFLGACRVHGDTELGKHAAEMILE----QDPQDPAAHILL 698 (861)
Q Consensus 631 ~l~~~~~r~g~~~eA~~~~~~~~-------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~~~~L 698 (861)
.....|.|..+++||-..|.+-. .-++. ..+-+++-.+.-..|+..|++.++..-+ +.|++..+...|
T Consensus 155 k~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenL 234 (308)
T KOG1585|consen 155 KCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENL 234 (308)
T ss_pred HhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHH
Confidence 33445555666666555544321 11221 1122233333444466666666666444 234454454444
Q ss_pred HHHHHHcCChhHHHHHH
Q 002975 699 SNLYASAGHWEYVANIR 715 (861)
Q Consensus 699 ~~~y~~~g~~~~a~~~~ 715 (861)
...| ..|+.+++.++.
T Consensus 235 L~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 235 LTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHh-ccCCHHHHHHHH
Confidence 4433 345556555543
No 257
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.93 E-value=9.8 Score=40.61 Aligned_cols=150 Identities=10% Similarity=-0.044 Sum_probs=83.1
Q ss_pred CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hcCCCCChhH
Q 002975 553 RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKP---NGITYIAVLSACSHAGLISEGWKHFRSMYD-EHGIVQRMEH 628 (861)
Q Consensus 553 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~~~~~p~~~~ 628 (861)
....+|..++..+.+.|+++.|...+.++...+... +......-+...-..|+-++|...++...+ ...-..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 345678888888999999999999888888744222 223333445556677888888888877764 1111111111
Q ss_pred HHHHHHHhhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHh------CCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 002975 629 YACMVDLLGRSGSLTEALEF-IRSMPLSADVLVWRTFLGACRVH------GDTELGKHAAEMILEQDPQDPAAHILLSNL 701 (861)
Q Consensus 629 ~~~l~~~~~r~g~~~eA~~~-~~~~~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 701 (861)
...+...+.. ..+..... ........-..++..+..-+... ++.+.+...++.+.+++|+...++..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111110000 00000000 00000000112333333334444 788999999999999999988888887776
Q ss_pred HHH
Q 002975 702 YAS 704 (861)
Q Consensus 702 y~~ 704 (861)
+.+
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 654
No 258
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.86 E-value=0.77 Score=44.92 Aligned_cols=110 Identities=17% Similarity=0.204 Sum_probs=81.2
Q ss_pred HHHHHHhcc--CCCchHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC----------
Q 002975 543 AFQVFKEME--DRNVISWTSMITGFAKH-----GFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGL---------- 605 (861)
Q Consensus 543 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~---------- 605 (861)
.++.|.... ++|-.+|-+++..|..+ +..+=....++.|.+-|+.-|..+|..|+..+-+...
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345566665 57778888888877644 4555566677888999999999999999887654432
Q ss_pred ------HHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCH-HHHHHHHHhCC
Q 002975 606 ------ISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSL-TEALEFIRSMP 653 (861)
Q Consensus 606 ------~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~-~eA~~~~~~~~ 653 (861)
-+=++.++++|. .+|+.||.++-..++++++|.|.. .+-..+.--||
T Consensus 133 ~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 234788999998 889999999999999999999863 34444444443
No 259
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.85 E-value=10 Score=37.23 Aligned_cols=157 Identities=16% Similarity=0.159 Sum_probs=92.7
Q ss_pred HccCCHHHHHHHHHhccCCCc------hHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHhc----
Q 002975 535 SRCANVEAAFQVFKEMEDRNV------ISWTSMITGFAKHGFAARALEIFYKMLAD-GIKPNGITYIAVLSACSHA---- 603 (861)
Q Consensus 535 ~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~---- 603 (861)
.+.|++++|.+.|+.+....+ .+--.++-++-+.+++++|+...++.+.. +-.|| .-|...|.+.+..
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQID 123 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccCC
Confidence 356888888888887764221 23334556666788888888888888774 22222 3344444443322
Q ss_pred ---CCH---HHHHHHHHHHHhhcCCC---CChh------------HHHHHHHHhhhcCCHHHHHHHHHhCC-CCCC----
Q 002975 604 ---GLI---SEGWKHFRSMYDEHGIV---QRME------------HYACMVDLLGRSGSLTEALEFIRSMP-LSAD---- 657 (861)
Q Consensus 604 ---g~~---~~a~~~~~~m~~~~~~~---p~~~------------~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~---- 657 (861)
.+. .+|..-|+..+.++.-. ||.. +=..+...|.+.|...-|..-+++|. .-|+
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~ 203 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAV 203 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccch
Confidence 222 23444444444444222 1211 12235567889999988888887773 1222
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC
Q 002975 658 VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDP 692 (861)
Q Consensus 658 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 692 (861)
...+--+..+|...|-.++|....+-+-.-.|++.
T Consensus 204 ~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 204 REALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 22444567889999999999988766665566553
No 260
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.74 E-value=5.8 Score=37.58 Aligned_cols=177 Identities=12% Similarity=0.061 Sum_probs=93.9
Q ss_pred cCCHHHHHHHHHhcc--CCC-chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHH
Q 002975 537 CANVEAAFQVFKEME--DRN-VISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKH 612 (861)
Q Consensus 537 ~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 612 (861)
.|-+.-|.--|.+.. .|+ +..||-|.--+...|+++.|.+.|+...+ +.|. ..++.+-.-++.-.|++.-|.+-
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d 155 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDD 155 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHH
Confidence 344444444444433 333 34566666666677777777777777777 4453 33444444455566777777665
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-
Q 002975 613 FRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD- 691 (861)
Q Consensus 613 ~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~- 691 (861)
|...-....-.|-...|-- +--+.=+..+|..-+.+--...|..-|+.-+-.+..-+--+ +.+++++.+-..++
T Consensus 156 ~~~fYQ~D~~DPfR~LWLY---l~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~ 230 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLY---LNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNT 230 (297)
T ss_pred HHHHHhcCCCChHHHHHHH---HHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchH
Confidence 5443322222222222221 11233355555543322213445566666544433221111 11223333322222
Q ss_pred ------CchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 692 ------PAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 692 ------~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
..+|.-|+.-|...|..++|..+++....
T Consensus 231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 36788999999999999999999997765
No 261
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.67 E-value=1.2 Score=43.96 Aligned_cols=91 Identities=18% Similarity=0.168 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCh-hHHHHH
Q 002975 558 WTSMITGFAKHGFAARALEIFYKMLADGIKPN----GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRM-EHYACM 632 (861)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l 632 (861)
|+.-+. +.+.|++.+|...|...++.. |+ ...+.-|..++...|++++|..+|..+.+.++-.|.. +.+-.|
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 554443 345566788888887777742 32 2344457777777888888888777777666555543 444444
Q ss_pred HHHhhhcCCHHHHHHHHHh
Q 002975 633 VDLLGRSGSLTEALEFIRS 651 (861)
Q Consensus 633 ~~~~~r~g~~~eA~~~~~~ 651 (861)
...+.+.|+.++|...+++
T Consensus 222 g~~~~~l~~~d~A~atl~q 240 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQ 240 (262)
T ss_pred HHHHHHhcCHHHHHHHHHH
Confidence 4444444444444444443
No 262
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.20 E-value=6.4 Score=34.14 Aligned_cols=59 Identities=12% Similarity=0.100 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002975 558 WTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMY 617 (861)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 617 (861)
....+..+...|+-++-.++++++.+. -++++.....+..||.+.|...++.+++.+.-
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 344566677777777777777777653 36677777778888888888888888877776
No 263
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.19 E-value=24 Score=40.77 Aligned_cols=87 Identities=17% Similarity=0.115 Sum_probs=45.2
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHcc--
Q 002975 461 VDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSG-FESNHCIYNALISMYSRC-- 537 (861)
Q Consensus 461 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~y~~~-- 537 (861)
...+.-.|+++.|++.+.+ ..+...|.+.+...+.-+.-..-..... ..+.... -.+...-+..||..|++.
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 4556678999999998877 3356777888877777664433222222 2222111 112225677888888864
Q ss_pred -CCHHHHHHHHHhccC
Q 002975 538 -ANVEAAFQVFKEMED 552 (861)
Q Consensus 538 -g~~~~A~~~~~~~~~ 552 (861)
.+..+|.+.|--+..
T Consensus 340 ~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 340 ITDPREALQYLYLICL 355 (613)
T ss_dssp TT-HHHHHHHHHGGGG
T ss_pred ccCHHHHHHHHHHHHH
Confidence 678888888877663
No 264
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.09 E-value=0.8 Score=46.02 Aligned_cols=95 Identities=17% Similarity=0.171 Sum_probs=61.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcC
Q 002975 562 ITGFAKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSG 640 (861)
Q Consensus 562 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g 640 (861)
.+.|.++|.+++|++.|.+.+. +.| |.+++..-..||.+...+..|..-...... .-...+.+|.|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---------Ld~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---------LDKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---------hhHHHHHHHHHHH
Confidence 3457788888888888888777 567 788888888888887777766554443331 0012234444433
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC
Q 002975 641 SLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDP 692 (861)
Q Consensus 641 ~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 692 (861)
. +-...|+.++|..-++.+++++|++-
T Consensus 173 ~-------------------------AR~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 173 Q-------------------------ARESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred H-------------------------HHHHHhhHHHHHHhHHHHHhhCcccH
Confidence 3 22344566777778888888888753
No 265
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.05 E-value=8.7 Score=34.46 Aligned_cols=130 Identities=10% Similarity=0.045 Sum_probs=83.8
Q ss_pred CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHH
Q 002975 554 NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMV 633 (861)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 633 (861)
+...-..++..+.+.+.....+.+++.+...+ ..+...++.++..+++.+ .++...+++. ..+......++
T Consensus 6 ~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~ 76 (140)
T smart00299 6 DPIDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVG 76 (140)
T ss_pred CcCCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHH
Confidence 33445567888888899999999999999876 356667888888887653 3445555542 11222233466
Q ss_pred HHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 002975 634 DLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVH-GDTELGKHAAEMILEQDPQDPAAHILLSNLYA 703 (861)
Q Consensus 634 ~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~ 703 (861)
..+.+.+.++++.-++.++... ...+..+..+ ++.+.|++.+++ ++++..|..++..+.
T Consensus 77 ~~c~~~~l~~~~~~l~~k~~~~------~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 77 KLCEKAKLYEEAVELYKKDGNF------KDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHHHHcCcHHHHHHHHHhhcCH------HHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 7777788888888888877422 2233333344 788888887775 234555655555443
No 266
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.81 E-value=3.7 Score=35.37 Aligned_cols=86 Identities=20% Similarity=0.159 Sum_probs=42.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCh--hHHHHHHHHhhhcC
Q 002975 564 GFAKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRM--EHYACMVDLLGRSG 640 (861)
Q Consensus 564 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~l~~~~~r~g 640 (861)
+.+..|+.+.|++.|.+.+. +-| +...|+.-..++.-.|+.++|+.-+++..+-.|-.-.. ..|.--..+|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 34455666666666666555 333 24456666666666666666665555555333322111 11222223444555
Q ss_pred CHHHHHHHHHh
Q 002975 641 SLTEALEFIRS 651 (861)
Q Consensus 641 ~~~eA~~~~~~ 651 (861)
+.+.|..-|+.
T Consensus 130 ~dd~AR~DFe~ 140 (175)
T KOG4555|consen 130 NDDAARADFEA 140 (175)
T ss_pred chHHHHHhHHH
Confidence 55555555544
No 267
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.66 E-value=1.5 Score=43.10 Aligned_cols=98 Identities=13% Similarity=0.104 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCChHHHHHHHHHH
Q 002975 300 TSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDM 379 (861)
Q Consensus 300 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m 379 (861)
+-.-..+..|.+.|++.|..+|+.|++.+-|..- +.-|.+-..+..-.+.-+-+++++++|
T Consensus 89 eFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf-------------------iP~nvfQ~~F~HYP~QQ~C~I~vLeqM 149 (406)
T KOG3941|consen 89 EFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF-------------------IPQNVFQKVFLHYPQQQNCAIKVLEQM 149 (406)
T ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc-------------------ccHHHHHHHHhhCchhhhHHHHHHHHH
Confidence 3333445556666666777777777666544211 111222222332222245688999999
Q ss_pred hhCCCCCChhhHHHHHHHhcccCCh-HHHHHHHHHHHH
Q 002975 380 IQGQVAPNHFTFASVLKACGNLLDS-NVAEQVYTHAVK 416 (861)
Q Consensus 380 ~~~g~~p~~~t~~~ll~a~~~~~~~-~~a~~i~~~~~~ 416 (861)
...|+.||..+-..+++++++.+.. .+..++.-.|-+
T Consensus 150 E~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 150 EWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 9999999999999999998877654 334444444433
No 268
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.54 E-value=21 Score=37.86 Aligned_cols=57 Identities=19% Similarity=0.382 Sum_probs=28.6
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHccCCHHHHHHHHH
Q 002975 491 TFASLLSGASSIGAIGKGEQIHARIIKSG-FESNHCIYNALISMYSRCANVEAAFQVFK 548 (861)
Q Consensus 491 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 548 (861)
.|...+++..+...++.|+.+|.++.+.+ ..+++.++++++..|+ .|+..-|..+|+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ife 456 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFE 456 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHH
Confidence 33444444445555555555555555555 3445555555555444 244444444444
No 269
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.38 E-value=0.31 Score=31.03 Aligned_cols=31 Identities=23% Similarity=0.192 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Q 002975 660 VWRTFLGACRVHGDTELGKHAAEMILEQDPQ 690 (861)
Q Consensus 660 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 690 (861)
+|..+...+...|+.+.|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667777888888888888888888888884
No 270
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.25 E-value=32 Score=39.35 Aligned_cols=89 Identities=13% Similarity=0.260 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHcCCCC-----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHH
Q 002975 572 ARALEIFYKMLADGIKP-----NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEAL 646 (861)
Q Consensus 572 ~~A~~~~~~m~~~g~~p-----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~ 646 (861)
+..+++|-+.-...+-| ........+..|.+.|-++|-.-++.+|- .++.+|--.--+-+++++|+
T Consensus 611 dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmG---------n~k~AL~lII~el~die~AI 681 (846)
T KOG2066|consen 611 DKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMG---------NAKEALKLIINELRDIEKAI 681 (846)
T ss_pred hHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhc---------chHHHHHHHHHHhhCHHHHH
Confidence 34555555554433322 11122334445555555555555554442 12233333333445555565
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHhC
Q 002975 647 EFIRSMPLSADVLVWRTFLGACRVHG 672 (861)
Q Consensus 647 ~~~~~~~~~p~~~~~~~ll~~~~~~g 672 (861)
++.++ ..|...|..|++.+..+=
T Consensus 682 efvKe---q~D~eLWe~LI~~~ldkP 704 (846)
T KOG2066|consen 682 EFVKE---QDDSELWEDLINYSLDKP 704 (846)
T ss_pred HHHHh---cCCHHHHHHHHHHhhcCc
Confidence 55554 347788888888776553
No 271
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.10 E-value=0.75 Score=46.19 Aligned_cols=88 Identities=10% Similarity=-0.049 Sum_probs=73.9
Q ss_pred HHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhH
Q 002975 633 VDLLGRSGSLTEALEFIRSM-PLSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEY 710 (861)
Q Consensus 633 ~~~~~r~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~ 710 (861)
.+-|.++|+++||++.+.+. ...| +++.+..-..+|.+.+.+..|+.-.+.++.++-....+|..-+.+-...|+..|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 35678999999999999764 5666 888888888999999999999999999999988777788888888888888888
Q ss_pred HHHHHHHHHh
Q 002975 711 VANIRKRMKE 720 (861)
Q Consensus 711 a~~~~~~m~~ 720 (861)
|.+-.+...+
T Consensus 184 AKkD~E~vL~ 193 (536)
T KOG4648|consen 184 AKKDCETVLA 193 (536)
T ss_pred HHHhHHHHHh
Confidence 8887776544
No 272
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.00 E-value=20 Score=36.67 Aligned_cols=97 Identities=9% Similarity=0.060 Sum_probs=46.4
Q ss_pred HHHHHHHHhhcccchH---HHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC-C--CchHHHHHHHH
Q 002975 491 TFASLLSGASSIGAIG---KGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED-R--NVISWTSMITG 564 (861)
Q Consensus 491 t~~~ll~a~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~--~~~~~~~li~~ 564 (861)
++..++.++...+..+ +|..+.+.+... ++..+.++-.-++.+.+.++.+++.+++.+|.. . ....+..++..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 4444555555544433 334444444332 222344444445555556677777777766653 1 22344444444
Q ss_pred H---HhcCChHHHHHHHHHHHHcCCCCC
Q 002975 565 F---AKHGFAARALEIFYKMLADGIKPN 589 (861)
Q Consensus 565 ~---~~~g~~~~A~~~~~~m~~~g~~p~ 589 (861)
+ ..+ ....|...+.+++...+.|.
T Consensus 165 i~~l~~~-~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 165 IKQLAEK-SPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHhh-CcHHHHHHHHHHHHHHhCCC
Confidence 3 222 23455555555555444444
No 273
>PRK15331 chaperone protein SicA; Provisional
Probab=90.84 E-value=5.9 Score=36.12 Aligned_cols=82 Identities=9% Similarity=-0.065 Sum_probs=52.9
Q ss_pred HccCCHHHHHHHHHhcc--C-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 002975 535 SRCANVEAAFQVFKEME--D-RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWK 611 (861)
Q Consensus 535 ~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 611 (861)
-..|++++|..+|.-+. + -|..-|..|..++-..+++++|+..|......+ .-|+..+.....++...|+.+.|+.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHH
Confidence 35677777777777554 2 345556666677777777777777777666533 2234445556667777777777777
Q ss_pred HHHHHH
Q 002975 612 HFRSMY 617 (861)
Q Consensus 612 ~~~~m~ 617 (861)
.|....
T Consensus 127 ~f~~a~ 132 (165)
T PRK15331 127 CFELVN 132 (165)
T ss_pred HHHHHH
Confidence 776665
No 274
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.43 E-value=21 Score=35.91 Aligned_cols=115 Identities=11% Similarity=0.113 Sum_probs=69.9
Q ss_pred hhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCC-chHHH---HHHHHHHhcCChHHH
Q 002975 499 ASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRN-VISWT---SMITGFAKHGFAARA 574 (861)
Q Consensus 499 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-~~~~~---~li~~~~~~g~~~~A 574 (861)
....|+...+..+++.+.... +-+...--.|...|...|+.+.|..++..++... ...|. .-|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 345667777777777766653 3345566678888999999999999999887321 11222 223344444444444
Q ss_pred HHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002975 575 LEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMY 617 (861)
Q Consensus 575 ~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 617 (861)
..+-++.-. .| |...-..+...+...|+.++|.+.+-.+.
T Consensus 223 ~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 223 QDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444333333 45 44455557777778888888877554444
No 275
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.05 E-value=9.4 Score=39.30 Aligned_cols=126 Identities=16% Similarity=0.306 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHc--cC----CHHHHHHHHHhccC-------CCchHHHHHHHHHHhcCC---
Q 002975 507 KGEQIHARIIKSGFESNHCIYNALISMYSR--CA----NVEAAFQVFKEMED-------RNVISWTSMITGFAKHGF--- 570 (861)
Q Consensus 507 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~--~g----~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~--- 570 (861)
+...+++.+.+.|+..+..+|-+..-.... .. ....|..+|+.|.+ ++-.++..|+.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 334455555555555555444432222222 11 23456666776663 233444444433 2222
Q ss_pred -hHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhc-CC--HHHHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 002975 571 -AARALEIFYKMLADGIKPN-GITYIAVLSACSHA-GL--ISEGWKHFRSMYDEHGIVQRMEHYACMVDL 635 (861)
Q Consensus 571 -~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~-g~--~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 635 (861)
.+++..+|+.+.+.|+..+ ..-+.+-+-++... .. +..+.++++.+. +.|+++...+|..+.-+
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~-~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALK-KNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHH-HcCCccccccccHHHHH
Confidence 3556777888888787664 33333333333322 21 456778888887 56888888888766443
No 276
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=89.88 E-value=3.8 Score=44.79 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=31.1
Q ss_pred chhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 002975 523 NHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADG 585 (861)
Q Consensus 523 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 585 (861)
+...|..|.+...+.|+++-|++.|++..+ |..|+-.|.-.|+.+.-.++.+.....|
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 445666666666666666666666665432 4445555555565555444444444433
No 277
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.57 E-value=3.4 Score=41.71 Aligned_cols=114 Identities=13% Similarity=0.066 Sum_probs=88.4
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHH----HHHHHHHHHhCCHHH
Q 002975 603 AGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM-PL-SADVLVW----RTFLGACRVHGDTEL 676 (861)
Q Consensus 603 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~-~~-~p~~~~~----~~ll~~~~~~g~~~~ 676 (861)
.|...+|-..++++.+++ +.|.-.+.-.-+++.-.|+.+.-...|++. |. .+|...| +-+.-+....|-++.
T Consensus 116 ~g~~h~a~~~wdklL~d~--PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDY--PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHhC--chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 577788888888888654 445555666667888889988888888886 33 4554322 333344567899999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 677 GKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 677 a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
|++.++++++++|.|.=+.-.++-++...||..|+.+...+-
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 999999999999999888889999999999999999876644
No 278
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.54 E-value=38 Score=37.57 Aligned_cols=343 Identities=13% Similarity=0.090 Sum_probs=194.9
Q ss_pred HhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHh-cccCChHHHHHHHHHHHHc-CCC-CCcchhhHHHHHHHHcCCH
Q 002975 363 VQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKAC-GNLLDSNVAEQVYTHAVKR-GRA-LDDCVGNSLISMYARSGRM 439 (861)
Q Consensus 363 ~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~~~~~~a~~i~~~~~~~-g~~-~~~~~~~~li~~~~~~g~~ 439 (861)
.+-|. .+.+.++|++-++. ++-....+...+.-+ ...|+.+.....|+.+... |.. .+...|...|..-..++++
T Consensus 90 ~klg~-~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~ 167 (577)
T KOG1258|consen 90 YKLGN-AENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSW 167 (577)
T ss_pred HHhhh-HHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccH
Confidence 34455 66777777776553 444555555555433 3556777777777776552 321 2333455556655667778
Q ss_pred HHHHHHHHhcCCCCeehHHHHHHHHHh---c------CChhHHHHHHHHHhh--------------------cCCCCCHH
Q 002975 440 EDARKAFESLFEKNLVSYNTMVDAYAK---N------LNSEKAFELLHEIED--------------------TGVGTSAY 490 (861)
Q Consensus 440 ~~A~~~~~~~~~~~~~~~~~li~~~~~---~------g~~~~A~~l~~~m~~--------------------~g~~p~~~ 490 (861)
.....+++++.+-....++..-.-|.+ . -..+++.++-..... .+-+.+..
T Consensus 168 k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l 247 (577)
T KOG1258|consen 168 KRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSL 247 (577)
T ss_pred HHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchh
Confidence 888888877755444444433333322 1 122233222222111 00011111
Q ss_pred H--HHHHHHHhhc-------ccchHHHHHHHHHHHHhC-------CCCchhHHHHHHHHHHccCCHHHHHHHHHhccCC-
Q 002975 491 T--FASLLSGASS-------IGAIGKGEQIHARIIKSG-------FESNHCIYNALISMYSRCANVEAAFQVFKEMEDR- 553 (861)
Q Consensus 491 t--~~~ll~a~~~-------~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~- 553 (861)
+ .+.+...+.. .......+..++.-++.- .+++..+|..-++--.+.|+.+.+.-+|+...-|
T Consensus 248 ~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c 327 (577)
T KOG1258|consen 248 TEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC 327 (577)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH
Confidence 1 1111111111 111111111222222210 1234677888888888999999999999988643
Q ss_pred --CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChh-HHH
Q 002975 554 --NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRME-HYA 630 (861)
Q Consensus 554 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~ 630 (861)
-...|--.+.-....|+.+-|-.++....+--++-.+.+-..-..-+...|+.+.|..+++.+.+++ |+.. .-.
T Consensus 328 A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l 404 (577)
T KOG1258|consen 328 ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY---PGLVEVVL 404 (577)
T ss_pred hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC---CchhhhHH
Confidence 2234554444444558888888777766664333334443333334667899999999999998665 5432 223
Q ss_pred HHHHHhhhcCCHHHHH---HHHHhC-CCCCCHHHHHHHH----H-HHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 002975 631 CMVDLLGRSGSLTEAL---EFIRSM-PLSADVLVWRTFL----G-ACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNL 701 (861)
Q Consensus 631 ~l~~~~~r~g~~~eA~---~~~~~~-~~~p~~~~~~~ll----~-~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 701 (861)
.-+.+..|.|+++.+. +++... +..-+..+...+. . .+...++.+.|..++.++.+..|++...|..+.++
T Consensus 405 ~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~ 484 (577)
T KOG1258|consen 405 RKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRF 484 (577)
T ss_pred HHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHH
Confidence 3456788999999988 555544 2222333333222 2 24567899999999999999999999999999998
Q ss_pred HHHcCChhH
Q 002975 702 YASAGHWEY 710 (861)
Q Consensus 702 y~~~g~~~~ 710 (861)
....+...|
T Consensus 485 ~~~~~~~~e 493 (577)
T KOG1258|consen 485 ELIQPSGRE 493 (577)
T ss_pred HHhCCcchh
Confidence 777764333
No 279
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.29 E-value=5.6 Score=36.61 Aligned_cols=137 Identities=10% Similarity=0.056 Sum_probs=82.6
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhhhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCC
Q 002975 165 IHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMT 244 (861)
Q Consensus 165 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~ 244 (861)
++..+.+.+.|+.|+...+..+++.+.+.|......++ ++.+.++++..+...|++.-.+ ...+.++=-+|.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~~----~~~~~Ql~lDML 85 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGNQ----YPPAYQLGLDML 85 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHcc----ChHHHHHHHHHH
Confidence 34555566677778877888888888777765544333 3333244444455455444322 222333333333
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhC
Q 002975 245 EKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTG 313 (861)
Q Consensus 245 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 313 (861)
.+=...+..++..+...|++-+|+++.+.... .+......++.+..+.+|...--.++......+
T Consensus 86 kRL~~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 86 KRLGTAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred HHhhhhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 33233567788889999999999999877532 233445667777777777776666666665543
No 280
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.25 E-value=40 Score=37.41 Aligned_cols=179 Identities=12% Similarity=-0.028 Sum_probs=93.9
Q ss_pred cchhhHHHHHHHHcCCHHHHHHHHHhcCCCC---eehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHh
Q 002975 423 DCVGNSLISMYARSGRMEDARKAFESLFEKN---LVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGA 499 (861)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 499 (861)
..+|+.-++.-.+.|+.+...-+|++..-+- ...|--.+.-....|+.+-|..++....+--++-.+.+-..-..-+
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 3456666666777777777777777764431 1234444444444477766666665554433332222222222233
Q ss_pred hcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHH---HHHHhcc--CCCchHHHHHHHH-----HHhcC
Q 002975 500 SSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAF---QVFKEME--DRNVISWTSMITG-----FAKHG 569 (861)
Q Consensus 500 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~---~~~~~~~--~~~~~~~~~li~~-----~~~~g 569 (861)
-..|+...|..+++.+...- +.-+.+-..-+.+..+.|..+.+. +++.... +.+....+.+.-- +.-.+
T Consensus 377 e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~ 455 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRE 455 (577)
T ss_pred HhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhc
Confidence 44567778888877776653 222333333455566677777766 3333332 1222222222222 22356
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 002975 570 FAARALEIFYKMLADGIKPNGITYIAVLSACSHA 603 (861)
Q Consensus 570 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 603 (861)
+.+.|..++.++.+. +.++..-|..++.-+...
T Consensus 456 d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 456 DADLARIILLEANDI-LPDCKVLYLELIRFELIQ 488 (577)
T ss_pred CHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhC
Confidence 677777777777773 334455555555544433
No 281
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.18 E-value=13 Score=34.36 Aligned_cols=131 Identities=14% Similarity=0.238 Sum_probs=85.0
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCcchhHHHHHHHHHcCCCCCcchHHHHHHHHhcC--CChHHHHHHHHhcC
Q 002975 63 IFTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKC--GDLNEANKIFKSMG 140 (861)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--g~~~~A~~~~~~~~ 140 (861)
++..+.+.+.+++|+...+..+++.+.+.|.+..-.++ +..++-+|.......+-.+... .-..-|...+.+++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 45566777889999999999999999999987555444 6667766666555444333322 12455566666665
Q ss_pred CCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhhhhhhhhh
Q 002975 141 NKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIYGFL 206 (861)
Q Consensus 141 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 206 (861)
. .+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..++...
T Consensus 90 ~-----~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 90 T-----AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred h-----hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2 3777888999999999999998875322 2233345566655555544433343333
No 282
>PRK09687 putative lyase; Provisional
Probab=89.11 E-value=29 Score=35.54 Aligned_cols=136 Identities=11% Similarity=-0.005 Sum_probs=59.7
Q ss_pred CchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 002975 522 SNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHG-FAARALEIFYKMLADGIKPNGITYIAVLSAC 600 (861)
Q Consensus 522 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 600 (861)
++..+-...+.++++.++.+....+..-+.++|...-...+.++.+.+ +..++...+..++. .+|...-...+.++
T Consensus 140 ~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aL 216 (280)
T PRK09687 140 KSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGL 216 (280)
T ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHH
Confidence 344555555566666655433333333333444444444444444432 13345555555553 33444444455555
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHH
Q 002975 601 SHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSADVLVWRTFLGAC 668 (861)
Q Consensus 601 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~~~~~~~ll~~~ 668 (861)
.+.|. .++...+-...+. ++ .....+.+++.-|.- +|...+.++. ..||..+-...+.+|
T Consensus 217 g~~~~-~~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 217 ALRKD-KRVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred HccCC-hhHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 55555 3344433333311 11 122344555555553 4555554443 244444444444333
No 283
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.99 E-value=0.89 Score=29.52 Aligned_cols=26 Identities=15% Similarity=0.264 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 002975 557 SWTSMITGFAKHGFAARALEIFYKML 582 (861)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~m~ 582 (861)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666777777777777777777644
No 284
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.70 E-value=49 Score=37.73 Aligned_cols=328 Identities=11% Similarity=0.077 Sum_probs=170.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccC---ChHHHHHHHHHHHHcCCCCCcchhhHHHHH
Q 002975 356 TAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLL---DSNVAEQVYTHAVKRGRALDDCVGNSLISM 432 (861)
Q Consensus 356 ~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~---~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 432 (861)
..+|.-++..+. +..|+++-..|...-..- ...|.....-+.+.. +-+.+..+-+.+... . .+...|..+..-
T Consensus 441 ~~vi~Rl~~r~~-Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~ 516 (829)
T KOG2280|consen 441 EVVIDRLVDRHL-YSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARR 516 (829)
T ss_pred hhhhHHHHhcch-hHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHH
Confidence 345666666666 777777776664332222 445555555444432 222233333332221 2 233445555555
Q ss_pred HHHcCCHHHHHHHHHhcCCC--------CeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccc
Q 002975 433 YARSGRMEDARKAFESLFEK--------NLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGA 504 (861)
Q Consensus 433 ~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 504 (861)
--.+|+.+-|..+.+.=+.. +..-+..-+.-..+.|+.+-...++-.|..+- +...|... ..+
T Consensus 517 Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~~------l~~ 587 (829)
T KOG2280|consen 517 AYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFMT------LRN 587 (829)
T ss_pred HHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHH------HHh
Confidence 56688888888877654321 11223344444555666666666555554321 11111111 122
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHH-HHhcc-----CCCchHHHHHHHHHHhcCC--------
Q 002975 505 IGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQV-FKEME-----DRNVISWTSMITGFAKHGF-------- 570 (861)
Q Consensus 505 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~-~~~~~-----~~~~~~~~~li~~~~~~g~-------- 570 (861)
...|..++.+..+.. |. ..|-+.|-...+...+-.+ ++... +.-..........+++...
T Consensus 588 ~p~a~~lY~~~~r~~---~~---~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ 661 (829)
T KOG2280|consen 588 QPLALSLYRQFMRHQ---DR---ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKAL 661 (829)
T ss_pred chhhhHHHHHHHHhh---ch---hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHH
Confidence 233444444433321 00 1122223222222222111 11100 1111122223334443322
Q ss_pred --hHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHH
Q 002975 571 --AARALEIFYKMLAD-GIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALE 647 (861)
Q Consensus 571 --~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~ 647 (861)
..+-+.+.+.+..+ |..-...|.+--+.-+...|.-.+|.++-.+.+ .|+...|--=+.++...+++++-++
T Consensus 662 ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLek 736 (829)
T KOG2280|consen 662 EDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEK 736 (829)
T ss_pred HHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHH
Confidence 11122333333322 323333455555666778899888888765543 4677777777788999999999888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 648 FIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 648 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
+-+++. .+.-|.-+..+|.+.|+.++|...+-++-. +.-...+|.+.|.+.+|.+.--+-
T Consensus 737 fAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 737 FAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred HHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHHh
Confidence 888764 245666788899999999998887655422 225778899999999998865433
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.49 E-value=0.69 Score=30.02 Aligned_cols=25 Identities=24% Similarity=0.147 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHh
Q 002975 661 WRTFLGACRVHGDTELGKHAAEMIL 685 (861)
Q Consensus 661 ~~~ll~~~~~~g~~~~a~~~~~~~~ 685 (861)
|..|...|...|++++|+.++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444445555555555555555533
No 286
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.69 E-value=1 Score=28.55 Aligned_cols=31 Identities=19% Similarity=0.410 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 002975 557 SWTSMITGFAKHGFAARALEIFYKMLADGIKPN 589 (861)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 589 (861)
+|..+...|...|++++|+..|++.++ +.|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 566677777777777777777777776 4453
No 287
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.47 E-value=1.9 Score=29.53 Aligned_cols=32 Identities=19% Similarity=0.539 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 002975 557 SWTSMITGFAKHGFAARALEIFYKMLADGIKPNG 590 (861)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 590 (861)
+|..+...|...|++++|+++|++.++ ..|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 466677777777777777777777777 45653
No 288
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.36 E-value=77 Score=38.39 Aligned_cols=55 Identities=16% Similarity=0.059 Sum_probs=26.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC
Q 002975 597 LSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP 653 (861)
Q Consensus 597 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~ 653 (861)
+.++...|+|++++.+..++.. +-.--..+-..|+..+..+++.-||-++..+..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 4455555666666655554431 111111122345555556666666655555543
No 289
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.64 E-value=40 Score=35.83 Aligned_cols=64 Identities=17% Similarity=0.259 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC----CCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 657 DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ----DPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 657 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
...+|..+...|+++|+++.|..++.++.+.++. .+...+.-+.+.-..|+..+|....+....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4568899999999999999999999999987632 456677779999999999999988776655
No 290
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.59 E-value=15 Score=34.46 Aligned_cols=59 Identities=14% Similarity=0.118 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHhccCCC------chHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002975 525 CIYNALISMYSRCANVEAAFQVFKEMEDRN------VISWTSMITGFAKHGFAARALEIFYKMLA 583 (861)
Q Consensus 525 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 583 (861)
..+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......|++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345566666667777777766666665432 12444555556666666666666555544
No 291
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=86.57 E-value=8.2 Score=43.35 Aligned_cols=183 Identities=19% Similarity=0.335 Sum_probs=111.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHH----------HHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchh
Q 002975 456 SYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAY----------TFASLLSGASSIGAIGKGEQIHARIIKSGFESNHC 525 (861)
Q Consensus 456 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----------t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 525 (861)
+...|+-.|....+++..+++.+.++.. ||.. .|.-.++---+.|+-++|+.+.-.+.+..-+..
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~va-- 277 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVA-- 277 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCC--
Confidence 4455666777778888888888887743 3322 233334444456677777776655554321111
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH---HHHHHHHHHHh
Q 002975 526 IYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGI---TYIAVLSACSH 602 (861)
Q Consensus 526 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~ 602 (861)
-++||-||++ |+.|- +-+.|...+..+.|++.|++..+ +.|+.. .+..|+.+
T Consensus 278 -----pDm~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a--- 332 (1226)
T KOG4279|consen 278 -----PDMYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA--- 332 (1226)
T ss_pred -----Cceeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH---
Confidence 1356666654 22221 12345566677889999999988 788754 34444443
Q ss_pred cCC-HHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 002975 603 AGL-ISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAA 681 (861)
Q Consensus 603 ~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 681 (861)
.|. ++...++ +.+ | -.|-.+++|.|.++.-.++++-. ..+.+....+|+.+|.+++
T Consensus 333 aG~~Fens~El-q~I----g--------mkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqAa 389 (1226)
T KOG4279|consen 333 AGEHFENSLEL-QQI----G--------MKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQAA 389 (1226)
T ss_pred hhhhccchHHH-HHH----H--------HHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHH
Confidence 332 2222211 111 1 23456789999998877766432 3566677788999999999
Q ss_pred HHHhccCCCC
Q 002975 682 EMILEQDPQD 691 (861)
Q Consensus 682 ~~~~~~~p~~ 691 (861)
+++++++|..
T Consensus 390 e~mfKLk~P~ 399 (1226)
T KOG4279|consen 390 EMMFKLKPPV 399 (1226)
T ss_pred HHHhccCCce
Confidence 9999999865
No 292
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.55 E-value=4.9 Score=40.46 Aligned_cols=76 Identities=11% Similarity=0.187 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCChHHHHH
Q 002975 524 HCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLA-----DGIKPNGITYIA 595 (861)
Q Consensus 524 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 595 (861)
..++..++..+..+|+.+.+...++++.. -|...|..+|.+|.+.|+...|+..|+++.+ .|+.|-..+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 44677788889999999999988888774 3567899999999999999999999888765 477777666554
Q ss_pred HHHH
Q 002975 596 VLSA 599 (861)
Q Consensus 596 ll~a 599 (861)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
No 293
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.88 E-value=4.4 Score=36.75 Aligned_cols=71 Identities=20% Similarity=0.115 Sum_probs=35.4
Q ss_pred hcCCHHHHHHHHHhCC-CCCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCh
Q 002975 638 RSGSLTEALEFIRSMP-LSADVLVWRT-FLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHW 708 (861)
Q Consensus 638 r~g~~~eA~~~~~~~~-~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~ 708 (861)
+.++.+++..++..+. ..|....... -...+...|++..|+++++.+.+-.|..+..--+++.++...|+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 4455555555555552 3443332222 222344555555555555555555555555555555555555543
No 294
>PRK10941 hypothetical protein; Provisional
Probab=85.53 E-value=5.2 Score=40.34 Aligned_cols=61 Identities=23% Similarity=0.175 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 660 VWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 660 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
..+.|-.++...++++.|.++.+.++.+.|+++.-+..-+-+|+..|.+..|..-++...+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3456667789999999999999999999999999999999999999999999998876654
No 295
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.38 E-value=4.7 Score=35.88 Aligned_cols=53 Identities=11% Similarity=0.118 Sum_probs=39.1
Q ss_pred HhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 002975 670 VHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERN 722 (861)
Q Consensus 670 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~ 722 (861)
..++.+.++.++.-+.-+.|+.+..-..-++++...|+|+||.++++.+.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 36677777777777777777777777777777777778877777777665543
No 296
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.25 E-value=4.2 Score=38.36 Aligned_cols=69 Identities=17% Similarity=0.151 Sum_probs=51.4
Q ss_pred HHHHHHHHhCCCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC----CCchHHHHHHHHHHcCChhHH
Q 002975 643 TEALEFIRSMPLSA--DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ----DPAAHILLSNLYASAGHWEYV 711 (861)
Q Consensus 643 ~eA~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~L~~~y~~~g~~~~a 711 (861)
++|.+.|-.+...| +.......+..+....|.++++..+-+++++.+. |+..+..|+++|...|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 56666666664333 3444455566677788999999999999987543 578888999999999999886
No 297
>PRK12798 chemotaxis protein; Reviewed
Probab=85.08 E-value=57 Score=34.77 Aligned_cols=205 Identities=14% Similarity=0.110 Sum_probs=133.7
Q ss_pred cCCHHHHHHHHHhccC----CCchHHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCC----hHHHHHHHHHHHhcCCHH
Q 002975 537 CANVEAAFQVFKEMED----RNVISWTSMITGFA-KHGFAARALEIFYKMLADGIKPN----GITYIAVLSACSHAGLIS 607 (861)
Q Consensus 537 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~ 607 (861)
.|+-++|.+.+..+.. +....+-.|+.+-. ...+..+|+++|++..- .-|- ......-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5888999999888763 34556777776544 56678999999998876 4554 334455555677889999
Q ss_pred HHHHHHHHHHhhcCCCCChhHHHH----HHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002975 608 EGWKHFRSMYDEHGIVQRMEHYAC----MVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEM 683 (861)
Q Consensus 608 ~a~~~~~~m~~~~~~~p~~~~~~~----l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 683 (861)
++..+-..-...|...|-...+.. .+.-+...-..+.-.+++..|.-.-...+|-.+...-...|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 988776666667777776554433 2222333334555556666664333456888888888999999999999999
Q ss_pred HhccCCCCCchHHHHHHHHHHc-----CChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEEeCCCCCCChHHHHHHH
Q 002975 684 ILEQDPQDPAAHILLSNLYASA-----GHWEYVANIRKRMKERNLIKEAGCSWIEADNKVHKFHVGETSHPKTLEIYAEL 758 (861)
Q Consensus 684 ~~~~~p~~~~~~~~L~~~y~~~-----g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l 758 (861)
+..+-. ....-...+++|... ...+++.+....+ ..++.+|+-..+.+..
T Consensus 283 A~~L~~-~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I------------------------~~~~L~~~Dr~Ll~AA 337 (421)
T PRK12798 283 ALKLAD-PDSADAARARLYRGAALVASDDAESALEELSQI------------------------DRDKLSERDRALLEAA 337 (421)
T ss_pred HHHhcc-CCCcchHHHHHHHHHHccCcccHHHHHHHHhcC------------------------ChhhCChhhHHHHHHH
Confidence 999874 344444555666543 2344444433322 1234567777777767
Q ss_pred HHHHHHHHhc
Q 002975 759 DQLALKIKEF 768 (861)
Q Consensus 759 ~~l~~~~~~~ 768 (861)
..+-.++.+.
T Consensus 338 ~~va~~V~~~ 347 (421)
T PRK12798 338 RSVARQVRRA 347 (421)
T ss_pred HHHHHHHhcC
Confidence 7776666653
No 298
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=84.80 E-value=59 Score=34.72 Aligned_cols=142 Identities=13% Similarity=0.123 Sum_probs=103.7
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHH-HHH
Q 002975 555 VISWTSMITGFAKHGFAARALEIFYKMLADG-IKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHY-ACM 632 (861)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~l 632 (861)
...|...+..-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+..-|..+|+.-...+ ||...| ...
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHH
Confidence 4567777777777766888899999999988 5667777888777554 577888888887655333 444443 345
Q ss_pred HHHhhhcCCHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 002975 633 VDLLGRSGSLTEALEFIRSMP--LSAD--VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSN 700 (861)
Q Consensus 633 ~~~~~r~g~~~eA~~~~~~~~--~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 700 (861)
++.+.+-++-+.|..+|+... ...+ ..+|..++..-...|+..-+...-++..++-|+....-+.++.
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sr 544 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSR 544 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHH
Confidence 677888899999999998652 2223 4688899988889999998888888888888876544444433
No 299
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=84.53 E-value=34 Score=35.25 Aligned_cols=133 Identities=10% Similarity=0.097 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHCCCCCCcccHHHHHHHHhc--cCC----chHHHHHHHHHHHhCC---CCccchHHHHHHHHHhCCCCC
Q 002975 265 RDAIRLFLDMILSGFLPDRFTLSGVVSACSE--LEL----FTSGKQLHSWAIRTGL---ALDVCVGCSLVDMYAKCTVDG 335 (861)
Q Consensus 265 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~--~~~----~~~a~~i~~~~~~~g~---~~~~~~~~~li~~y~~~g~~g 335 (861)
++.+++++.|.+.|++-+.++|.+.+-.... ..+ ...++.++..|.+.-. .++-.++..|+.+ ...+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~-- 154 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED-- 154 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc--
Confidence 4566788889999998888887765443333 111 3345555555555432 1222233333222 1000
Q ss_pred CHHHHHHHHhccCCCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCCh--hhHHHHHHHhcccCC--hHHHHHHH
Q 002975 336 SVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNH--FTFASVLKACGNLLD--SNVAEQVY 411 (861)
Q Consensus 336 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~~~--~~~a~~i~ 411 (861)
++. ..+++..+|+.+...|...+. ...+.+|..+....+ ...+.+++
T Consensus 155 -~e~----------------------------l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~ 205 (297)
T PF13170_consen 155 -VEE----------------------------LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELY 205 (297)
T ss_pred -HHH----------------------------HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 000 045667778888777776633 334444444433332 34677888
Q ss_pred HHHHHcCCCCCcchhhHHH
Q 002975 412 THAVKRGRALDDCVGNSLI 430 (861)
Q Consensus 412 ~~~~~~g~~~~~~~~~~li 430 (861)
+.+.+.|++.....|..+.
T Consensus 206 ~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 206 NALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHcCCccccccccHHH
Confidence 8888888877777666543
No 300
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.29 E-value=83 Score=35.98 Aligned_cols=77 Identities=13% Similarity=0.041 Sum_probs=42.1
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc-C--ChhHHHH
Q 002975 641 SLTEALEFIRSMPLSADVLVWRTFLGACRVH----GDTELGKHAAEMILEQDPQDPAAHILLSNLYASA-G--HWEYVAN 713 (861)
Q Consensus 641 ~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~-g--~~~~a~~ 713 (861)
+.+.+..++.+....-+......|...+..- .+.+.|...+.++-+.. +.....|+.++..- | ++..|.+
T Consensus 454 ~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~ 530 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKR 530 (552)
T ss_pred chhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHH
Confidence 4555555555554444444444444443322 25666766666666655 55666666666442 1 1566666
Q ss_pred HHHHHHh
Q 002975 714 IRKRMKE 720 (861)
Q Consensus 714 ~~~~m~~ 720 (861)
.+....+
T Consensus 531 ~~~~~~~ 537 (552)
T KOG1550|consen 531 YYDQASE 537 (552)
T ss_pred HHHHHHh
Confidence 6665554
No 301
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=83.79 E-value=6.8 Score=28.12 Aligned_cols=50 Identities=16% Similarity=0.111 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcC
Q 002975 694 AHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSWIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKEFG 769 (861)
Q Consensus 694 ~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g 769 (861)
.+..|+-.+.+.|++++|.+..+.+.+ .+|...+.......+.++|++.|
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdg 52 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDG 52 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccC
Confidence 356788889999999999999887766 35666666666666777887776
No 302
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.57 E-value=25 Score=32.24 Aligned_cols=48 Identities=23% Similarity=0.304 Sum_probs=21.8
Q ss_pred cCCHHHHHHHHHhcCCCCeehHHHHH-----HHHHhcCChhHHHHHHHHHhhc
Q 002975 436 SGRMEDARKAFESLFEKNLVSYNTMV-----DAYAKNLNSEKAFELLHEIEDT 483 (861)
Q Consensus 436 ~g~~~~A~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~l~~~m~~~ 483 (861)
.+..++|+.-|..+.+.+--.|-.|. ....+.|+..+|...|.+.-..
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 34444444444444433333333322 2234455555555555555443
No 303
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.53 E-value=33 Score=31.30 Aligned_cols=86 Identities=13% Similarity=0.061 Sum_probs=45.5
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCChh-HHHHHHHHhhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHhCCHHHHH
Q 002975 601 SHAGLISEGWKHFRSMYDEHGIVQRME-HYACMVDLLGRSGSLTEALEFIRSMP-LSADVLVWRTFLGACRVHGDTELGK 678 (861)
Q Consensus 601 ~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~ 678 (861)
...++.+++..+++.+. -+.|... +-..-+-++.+.|++.+|+.+++++. ..|....-.+|+..|.....-..=.
T Consensus 21 l~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 44556666666666665 3344322 11222345566777777777777764 2334444456666665544333334
Q ss_pred HHHHHHhccCC
Q 002975 679 HAAEMILEQDP 689 (861)
Q Consensus 679 ~~~~~~~~~~p 689 (861)
..++.+++..+
T Consensus 98 ~~A~evle~~~ 108 (160)
T PF09613_consen 98 RYADEVLESGA 108 (160)
T ss_pred HHHHHHHhcCC
Confidence 44555666555
No 304
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=83.32 E-value=2.5 Score=30.33 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=27.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHH
Q 002975 663 TFLGACRVHGDTELGKHAAEMILEQDPQDPAAHIL 697 (861)
Q Consensus 663 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 697 (861)
.|.-++.+.|+++.|.+..+.+++.+|+|..+..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 35567899999999999999999999998555433
No 305
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.29 E-value=14 Score=30.23 Aligned_cols=87 Identities=15% Similarity=0.214 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 002975 505 IGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLAD 584 (861)
Q Consensus 505 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 584 (861)
.++|..|-+-+...+- ....+--.-+..+...|++++|..+.+.+..||...|-+|-. .+.|..+++..-+.+|-.+
T Consensus 21 HqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 3445555444444331 122222233345667899999999998888899999877643 4677777777778888877
Q ss_pred CCCCChHHHHH
Q 002975 585 GIKPNGITYIA 595 (861)
Q Consensus 585 g~~p~~~t~~~ 595 (861)
| .|...+|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 6 565555543
No 306
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.16 E-value=42 Score=31.66 Aligned_cols=91 Identities=14% Similarity=0.129 Sum_probs=59.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHH-----HHHHhhhcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHH
Q 002975 596 VLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYAC-----MVDLLGRSGSLTEALEFIRSMPLSAD--VLVWRTFLGAC 668 (861)
Q Consensus 596 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-----l~~~~~r~g~~~eA~~~~~~~~~~p~--~~~~~~ll~~~ 668 (861)
+...+...|++++|..-++... . . |..+.+.. |...+...|.+|+|+..++... .++ +..-..-..++
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l-~--~-t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQAL-A--Q-TKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHH-c--c-chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHH
Confidence 3445667777888877776554 1 1 22233333 3446777889999998888763 222 22223344668
Q ss_pred HHhCCHHHHHHHHHHHhccCCCC
Q 002975 669 RVHGDTELGKHAAEMILEQDPQD 691 (861)
Q Consensus 669 ~~~g~~~~a~~~~~~~~~~~p~~ 691 (861)
...|+.+.|...|+++++.++++
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 170 LAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHcCchHHHHHHHHHHHHccCCh
Confidence 88999999999999999887544
No 307
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.95 E-value=13 Score=34.88 Aligned_cols=96 Identities=14% Similarity=0.051 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH--HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCh------h
Q 002975 556 ISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGI--TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRM------E 627 (861)
Q Consensus 556 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~------~ 627 (861)
..+..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...|++.....+..+......-..+. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 466778888999999999999999988876666543 56778888888889888888877765322221111 2
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCC
Q 002975 628 HYACMVDLLGRSGSLTEALEFIRSMP 653 (861)
Q Consensus 628 ~~~~l~~~~~r~g~~~eA~~~~~~~~ 653 (861)
.|..+. +...|++.+|-+.|-...
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHccC
Confidence 233332 335778888888876653
No 308
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.66 E-value=2.6 Score=26.58 Aligned_cols=31 Identities=29% Similarity=0.518 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 002975 557 SWTSMITGFAKHGFAARALEIFYKMLADGIKPN 589 (861)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 589 (861)
.|..+...|...|++++|++.|++.++ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 456667777777777777777777776 4443
No 309
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.46 E-value=12 Score=30.51 Aligned_cols=53 Identities=21% Similarity=0.152 Sum_probs=39.1
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHH
Q 002975 645 ALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHIL 697 (861)
Q Consensus 645 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 697 (861)
++.-+-.+..-|++.+..+-+.|||+.+|+..|++.++-+...-.++...|-.
T Consensus 29 ~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~ 81 (103)
T cd00923 29 GLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPY 81 (103)
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHH
Confidence 33333445578899999999999999999999999999777444334444544
No 310
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.33 E-value=26 Score=34.12 Aligned_cols=74 Identities=11% Similarity=-0.050 Sum_probs=43.6
Q ss_pred HHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHHc
Q 002975 632 MVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD------PAAHILLSNLYASA 705 (861)
Q Consensus 632 l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~L~~~y~~~ 705 (861)
-..+|..+|..+-|-.-+++.. -....-+.+.|++++++.+.+--.+ ...|-.++++|.+.
T Consensus 97 As~lY~E~GspdtAAmaleKAa-------------k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 97 ASELYVECGSPDTAAMALEKAA-------------KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred HHHHHHHhCCcchHHHHHHHHH-------------HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence 3455566666555544444431 0123346777777777766642222 23355678889999
Q ss_pred CChhHHHHHHHHH
Q 002975 706 GHWEYVANIRKRM 718 (861)
Q Consensus 706 g~~~~a~~~~~~m 718 (861)
.+++||...+.+-
T Consensus 164 ~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 164 EKFTEAATAFLKE 176 (308)
T ss_pred HHhhHHHHHHHHh
Confidence 9999987766543
No 311
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=82.27 E-value=15 Score=32.07 Aligned_cols=48 Identities=15% Similarity=0.090 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHhc-cCCCCC-chHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 673 DTELGKHAAEMILE-QDPQDP-AAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 673 ~~~~a~~~~~~~~~-~~p~~~-~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+..+++.+++.+++ -.|+.. .....|+-.+++.|+++.+.++.+...+
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 55666666776665 344332 2333566666777777777776665544
No 312
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=82.11 E-value=64 Score=33.04 Aligned_cols=98 Identities=9% Similarity=-0.035 Sum_probs=42.6
Q ss_pred hHHHHHHHhcccCChHH---HHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCC---CeehHHHHHHH
Q 002975 390 TFASVLKACGNLLDSNV---AEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEK---NLVSYNTMVDA 463 (861)
Q Consensus 390 t~~~ll~a~~~~~~~~~---a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~ 463 (861)
++..+..++...+..+. +..+++.+... .+..+.++-.-+..+.+.++.+++.+.+.+|... ....+...+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 34444455554444333 33333333222 2223334434445555566666666666666321 12334444444
Q ss_pred HHh--cCChhHHHHHHHHHhhcCCCCC
Q 002975 464 YAK--NLNSEKAFELLHEIEDTGVGTS 488 (861)
Q Consensus 464 ~~~--~g~~~~A~~l~~~m~~~g~~p~ 488 (861)
+-+ ......|...+..+....+.|.
T Consensus 165 i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 165 IKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 311 1223445555555544433433
No 313
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.91 E-value=1.1e+02 Score=35.56 Aligned_cols=45 Identities=13% Similarity=0.066 Sum_probs=25.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhcc
Q 002975 251 WTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSEL 296 (861)
Q Consensus 251 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 296 (861)
--++|--+.+.|++++|.++..+... +.......|...+.++...
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTT
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhC
Confidence 33566666777777777777644433 2444455666666666554
No 314
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.74 E-value=11 Score=37.89 Aligned_cols=97 Identities=11% Similarity=0.195 Sum_probs=72.1
Q ss_pred hCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC-CC--------chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 002975 518 SGFESNHCIYNALISMYSRCANVEAAFQVFKEMED-RN--------VISWTSMITGFAKHGFAARALEIFYKMLADGIKP 588 (861)
Q Consensus 518 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 588 (861)
.|.+....+...++..-....+++++...+-.+.. ++ ..+|-.+ + ..=++++++.++..=++-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl---l-lky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL---L-LKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH---H-HccChHHHHHHHhCcchhcccc
Confidence 35555666667777777777888888888776652 22 2233222 2 2335779999999989999999
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002975 589 NGITYIAVLSACSHAGLISEGWKHFRSMYD 618 (861)
Q Consensus 589 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 618 (861)
|..|++.+++.+.+.+++.+|.++...|..
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999999999888777663
No 315
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.64 E-value=0.76 Score=41.65 Aligned_cols=84 Identities=12% Similarity=0.132 Sum_probs=57.9
Q ss_pred HHHHHHhcCCcchhHHHHHHHHHcCCCCCcchHHHHHHHHhcCCChHHHHHHHHhcCCCCCceeHHHHHHHHHhcCChhH
Q 002975 84 LLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGDLNEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVD 163 (861)
Q Consensus 84 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 163 (861)
+++.+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.. +..-...++..+-+.|.+++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~----~~yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS----NNYDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS----SSS-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc----cccCHHHHHHHHHhcchHHH
Confidence 45566666777777778888887766667788888888888888777777777633 22444567777777777777
Q ss_pred HHHHHHHH
Q 002975 164 AIHMFVEM 171 (861)
Q Consensus 164 A~~~~~~m 171 (861)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 77666654
No 316
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.26 E-value=12 Score=30.42 Aligned_cols=63 Identities=14% Similarity=0.183 Sum_probs=47.5
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 002975 570 FAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVD 634 (861)
Q Consensus 570 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 634 (861)
+.-++.+-++.+....+.|++....+.+.||.+.+++.-|.++|+..+.+.|. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 34456666777777788999999999999999999999999999988754443 3445665543
No 317
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.98 E-value=46 Score=30.66 Aligned_cols=121 Identities=15% Similarity=0.125 Sum_probs=77.6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChh-HHHHH--HHHhhhcC
Q 002975 565 FAKHGFAARALEIFYKMLADGIKPNGI-TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRME-HYACM--VDLLGRSG 640 (861)
Q Consensus 565 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l--~~~~~r~g 640 (861)
+++.+..++|+.-|.++.+.|...=++ .-..........|+-.+|...|+++-.+..+ |... -..-| .-++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHHHHHHHHHhccc
Confidence 356677888888888888876543322 2233444566778888888888887643322 2221 11212 22456778
Q ss_pred CHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 002975 641 SLTEALEFIRSMPLSA---DVLVWRTFLGACRVHGDTELGKHAAEMILE 686 (861)
Q Consensus 641 ~~~eA~~~~~~~~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 686 (861)
.+++.....+.+..+- ....-.+|.-+-.+.|++..|...|+++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8888877777764222 234556677778888999999988888876
No 318
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.75 E-value=50 Score=32.26 Aligned_cols=53 Identities=11% Similarity=-0.066 Sum_probs=45.2
Q ss_pred HHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 668 CRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 668 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+...|++-+++.....++..+|.|..+|..-+.+.+..=+.++|.+-+....+
T Consensus 240 ~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 240 LLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 34668888899999999999999999999999988888888888888777765
No 319
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.70 E-value=3.1 Score=25.14 Aligned_cols=31 Identities=26% Similarity=0.177 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Q 002975 660 VWRTFLGACRVHGDTELGKHAAEMILEQDPQ 690 (861)
Q Consensus 660 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 690 (861)
.|..+...+...|+.+.|...++++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3455555666666666666666666666654
No 320
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.61 E-value=2.8 Score=24.73 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHcCChhHHHHHHH
Q 002975 693 AAHILLSNLYASAGHWEYVANIRK 716 (861)
Q Consensus 693 ~~~~~L~~~y~~~g~~~~a~~~~~ 716 (861)
.....|+.+|...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356788999999999999988764
No 321
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.61 E-value=61 Score=32.60 Aligned_cols=54 Identities=17% Similarity=0.050 Sum_probs=49.0
Q ss_pred HHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 002975 666 GACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMK 719 (861)
Q Consensus 666 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~ 719 (861)
..|...|.+.+|.++.++++.++|-+...+..|.++|+..|+--.|.+-++.+.
T Consensus 287 ~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 458899999999999999999999999999999999999999888887777664
No 322
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.41 E-value=0.89 Score=46.02 Aligned_cols=90 Identities=12% Similarity=0.145 Sum_probs=69.5
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHH
Q 002975 638 RSGSLTEALEFIRSM-PLSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIR 715 (861)
Q Consensus 638 r~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~ 715 (861)
..|.+++|++.+... +..| ....+..-.+++.+.+....|++-+..+++++|+.+..|-.-+......|.|++|.+.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 356677777777655 3333 34455556677788888889999999999999999999998888999999999999998
Q ss_pred HHHHhCCCccCC
Q 002975 716 KRMKERNLIKEA 727 (861)
Q Consensus 716 ~~m~~~~~~~~~ 727 (861)
...-+.+.....
T Consensus 206 ~~a~kld~dE~~ 217 (377)
T KOG1308|consen 206 ALACKLDYDEAN 217 (377)
T ss_pred HHHHhccccHHH
Confidence 888777665543
No 323
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.18 E-value=12 Score=30.86 Aligned_cols=60 Identities=15% Similarity=0.204 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 002975 573 RALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVD 634 (861)
Q Consensus 573 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 634 (861)
+...-++.+....+.|++....+.+.||.+.+++.-|.++|+.++.+.+-. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 455556667777789999999999999999999999999999988665543 336666654
No 324
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=80.17 E-value=32 Score=32.43 Aligned_cols=53 Identities=15% Similarity=0.093 Sum_probs=33.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002975 563 TGFAKHGFAARALEIFYKMLADGIKPN------GITYIAVLSACSHAGLISEGWKHFRSMY 617 (861)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 617 (861)
.-+..+|++++|..-|.+.++. -|. .+.|..-..|+.+.+.++.|+.-....+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai 161 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI 161 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH
Confidence 3456678888888888888774 332 3345555556667777777666554443
No 325
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=79.97 E-value=2.2e+02 Score=37.78 Aligned_cols=62 Identities=13% Similarity=0.097 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 658 VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 658 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
..+|-.....+|..|..+.|..+.-++.+.. -+..+.-.+...-..|+-..|..+.+.--+.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 5689999999999999999999888887776 4678889999999999999999888766543
No 326
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=79.95 E-value=2.9 Score=26.67 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=14.8
Q ss_pred CCchhHHHHHHHHHHccCCHHHHH
Q 002975 521 ESNHCIYNALISMYSRCANVEAAF 544 (861)
Q Consensus 521 ~~~~~~~~~li~~y~~~g~~~~A~ 544 (861)
+.+...|+.|...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445666666666666666666654
No 327
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=79.88 E-value=15 Score=34.02 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcC
Q 002975 571 AARALEIFYKMLADGIKPN-GITYIAVLSACSHAG 604 (861)
Q Consensus 571 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g 604 (861)
+++|+.-|++.+. +.|+ ..++..+..++...+
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 4566666777777 6787 457777777776544
No 328
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=79.86 E-value=8.1 Score=38.95 Aligned_cols=62 Identities=19% Similarity=0.216 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 659 LVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 659 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
.++..++.++...|+.+.++..++.+++.+|-+...|..|...|...|+...|...++.+++
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 45566777777888888888888888888888888888888888888888888888887765
No 329
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.74 E-value=3.3 Score=25.81 Aligned_cols=27 Identities=11% Similarity=0.150 Sum_probs=15.9
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhccCCC
Q 002975 664 FLGACRVHGDTELGKHAAEMILEQDPQ 690 (861)
Q Consensus 664 ll~~~~~~g~~~~a~~~~~~~~~~~p~ 690 (861)
+..++...|+.+.|...++++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444455556666666666666666654
No 330
>PF13934 ELYS: Nuclear pore complex assembly
Probab=79.08 E-value=38 Score=33.30 Aligned_cols=106 Identities=23% Similarity=0.237 Sum_probs=59.2
Q ss_pred HHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 002975 558 WTSMITGFA--KHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDL 635 (861)
Q Consensus 558 ~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 635 (861)
|...+.||. .++++++|++++-.- .+.|+... -++.++...|+.+.|..+++.+. ....+.+....+...
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHHH
Confidence 444555554 566777777666221 12222111 35566666778888888776654 222222333333334
Q ss_pred hhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC
Q 002975 636 LGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHG 672 (861)
Q Consensus 636 ~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g 672 (861)
..+|.+.||..+.+..+.+-....|..++..|....
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 556788888888887754323457777777766554
No 331
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=78.37 E-value=21 Score=29.46 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=36.4
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHH
Q 002975 646 LEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILL 698 (861)
Q Consensus 646 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 698 (861)
+.-+-.+..-|++.+..+.+.+||+.+|+..|.++++-+...-.+....|-.+
T Consensus 33 lN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~ 85 (108)
T PF02284_consen 33 LNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYI 85 (108)
T ss_dssp HHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHH
T ss_pred HHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHH
Confidence 33333445788999999999999999999999999998887655544455543
No 332
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=78.32 E-value=3.4 Score=26.03 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002975 557 SWTSMITGFAKHGFAARALEIFYKMLA 583 (861)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 583 (861)
+|..+...|.+.|++++|+..|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666667777777777777776665
No 333
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=77.90 E-value=4 Score=27.11 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=21.8
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 693 AAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 693 ~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
.++..|+.+|...|++++|.+++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3567888999999999999988887654
No 334
>PRK11619 lytic murein transglycosylase; Provisional
Probab=77.16 E-value=1.5e+02 Score=34.50 Aligned_cols=126 Identities=10% Similarity=0.022 Sum_probs=72.9
Q ss_pred cCChHHHHHHHHHHHHc-CCCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHH
Q 002975 568 HGFAARALEIFYKMLAD-GIKPNG--ITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTE 644 (861)
Q Consensus 568 ~g~~~~A~~~~~~m~~~-g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~e 644 (861)
..+.+.|..++.+.... +..++. .....+.......+..+++...++... .-..+.....--+..-.+.++.+.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~---~~~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVI---MRSQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcc---cccCCcHHHHHHHHHHHHccCHHH
Confidence 34568888888877544 333332 233444333333333566777766543 111233444444555558889998
Q ss_pred HHHHHHhCCC-CCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 002975 645 ALEFIRSMPL-SADVLVWRT-FLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSN 700 (861)
Q Consensus 645 A~~~~~~~~~-~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 700 (861)
+...|..|+. .-+..-|.- +..+....|+.+.|...++++.. + ...|-.|+.
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~--~~fYG~LAa 384 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--Q--RGFYPMVAA 384 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CCcHHHHHH
Confidence 8889988862 112223333 55565668999999999888744 2 235656554
No 335
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.99 E-value=76 Score=30.90 Aligned_cols=62 Identities=5% Similarity=0.014 Sum_probs=34.8
Q ss_pred HHHHHhhhc-CCHHHHHHHHHhCC-----CCCCHHHHHHHHHH---HHHhCCHHHHHHHHHHHhccCCCCC
Q 002975 631 CMVDLLGRS-GSLTEALEFIRSMP-----LSADVLVWRTFLGA---CRVHGDTELGKHAAEMILEQDPQDP 692 (861)
Q Consensus 631 ~l~~~~~r~-g~~~eA~~~~~~~~-----~~p~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~p~~~ 692 (861)
.+...|-.. .+++.|+..++... .+.++..-..++.+ -...+++.+|+.+++++..-.-+|+
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 344444433 45666666666552 12233333344433 3456788889999988887655554
No 336
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.83 E-value=5.1 Score=26.60 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002975 556 ISWTSMITGFAKHGFAARALEIFYKMLA 583 (861)
Q Consensus 556 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 583 (861)
.+++.|...|...|++++|+.++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566677777777777777777776654
No 337
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.74 E-value=77 Score=30.86 Aligned_cols=36 Identities=25% Similarity=0.331 Sum_probs=22.8
Q ss_pred HHHh-CCHHHHHHHHHHHhccCCCCCch--HHHHHHHHH
Q 002975 668 CRVH-GDTELGKHAAEMILEQDPQDPAA--HILLSNLYA 703 (861)
Q Consensus 668 ~~~~-g~~~~a~~~~~~~~~~~p~~~~~--~~~L~~~y~ 703 (861)
|... .|.--+.+++++-.+++|.-..+ +..|..+..
T Consensus 204 Chl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~ 242 (288)
T KOG1586|consen 204 CHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLD 242 (288)
T ss_pred HhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHH
Confidence 5444 57777778888888888874433 444544443
No 338
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.54 E-value=1.5e+02 Score=34.23 Aligned_cols=72 Identities=15% Similarity=0.137 Sum_probs=38.5
Q ss_pred HHHHHHhhhCCCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhc
Q 002975 220 CALIDMFVKGSVDLESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSE 295 (861)
Q Consensus 220 ~~l~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 295 (861)
...|+.+.- .|++++|-.+.-.|-..+..-|---+..+...++......+ +.......+...|-.+|..+..
T Consensus 396 ~~yI~HLl~-~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 396 KTYIDHLLF-EGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHh-cchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 344444444 56677777776666666666666666666665555443322 2222222344456666655544
No 339
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.52 E-value=24 Score=35.65 Aligned_cols=101 Identities=19% Similarity=0.211 Sum_probs=65.8
Q ss_pred CCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCC-CC-----cccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCC
Q 002975 313 GLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLD-HN-----VMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAP 386 (861)
Q Consensus 313 g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~-~~-----~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p 386 (861)
|......+...++..-....+ ++++...+-++.. ++ ..+-.+.++.+.+.. +++++.++..=++.|+-|
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~---idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky~--pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREE---IDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKYD--PQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred CCCcceeehhhhhhccccccc---hhHHHHHHHHHhcCcchhhhccccHHHHHHHHHccC--hHHHHHHHhCcchhcccc
Confidence 334444444555554444333 7777777766633 21 112223444444433 778888888888889999
Q ss_pred ChhhHHHHHHHhcccCChHHHHHHHHHHHHcC
Q 002975 387 NHFTFASVLKACGNLLDSNVAEQVYTHAVKRG 418 (861)
Q Consensus 387 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 418 (861)
|.+|+..++..+.+.++...|.++.-.|+...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999998888888888888877776553
No 340
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=75.07 E-value=2.1e+02 Score=35.11 Aligned_cols=222 Identities=10% Similarity=-0.049 Sum_probs=108.4
Q ss_pred HHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCc
Q 002975 444 KAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESN 523 (861)
Q Consensus 444 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~ 523 (861)
.+...+..+|...-..-+..+.+.+. .++...+.++.. .+|...-...+.++.+.+........+..+.+ .+|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCC
Confidence 44455556666666666666666654 334444444442 23333333444444333221111122222322 245
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 002975 524 HCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHA 603 (861)
Q Consensus 524 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 603 (861)
..+-...++.+...+.- ....+...+.++|...-...+.++.+.+..+. +.... -.+|...-.....++...
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHh
Confidence 56656666666544321 12234455556666666666666666554322 12222 244544445555566555
Q ss_pred CCHHH-HHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 002975 604 GLISE-GWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAE 682 (861)
Q Consensus 604 g~~~~-a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 682 (861)
+..+. +...+..+.. .++...-...+..+++.|.-+.+...+..+...+|..+-...+.++...+.. .+...+.
T Consensus 770 ~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-~a~~~L~ 844 (897)
T PRK13800 770 GAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAAD-VAVPALV 844 (897)
T ss_pred ccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcccc-chHHHHH
Confidence 54332 2333333331 3456666667777777776655544444444556666666666666666542 3444444
Q ss_pred HHh
Q 002975 683 MIL 685 (861)
Q Consensus 683 ~~~ 685 (861)
.++
T Consensus 845 ~~L 847 (897)
T PRK13800 845 EAL 847 (897)
T ss_pred HHh
Confidence 444
No 341
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=74.56 E-value=4.2 Score=25.27 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 694 AHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 694 ~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
++..++.+|...|++++|.+.++.+.+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 467899999999999999999998865
No 342
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.44 E-value=38 Score=37.56 Aligned_cols=147 Identities=16% Similarity=0.102 Sum_probs=95.8
Q ss_pred ccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHH
Q 002975 536 RCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGI-TYIAVLSACSHAGLISEGWKHFR 614 (861)
Q Consensus 536 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 614 (861)
-.|+++.|..++..+.++ ..+.++.-+-..|..++|+++ .+|.. -|.. ..+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFel----al~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRFEL----ALKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhhhh----hhhcCcHHHHHHHHH
Confidence 357777777766666532 334556666777777777653 34433 2332 236788888888765
Q ss_pred HHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCch
Q 002975 615 SMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAA 694 (861)
Q Consensus 615 ~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 694 (861)
+.. +..-|..|.++...+|++..|.+.|.+.. -|.+|+-.+-..|+.+.-..+...+.+..-.|
T Consensus 662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N--- 725 (794)
T KOG0276|consen 662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN--- 725 (794)
T ss_pred hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc---
Confidence 543 44568889999999999999999988763 35566666777777765555555554444433
Q ss_pred HHHHHHHHHHcCChhHHHHHHH
Q 002975 695 HILLSNLYASAGHWEYVANIRK 716 (861)
Q Consensus 695 ~~~L~~~y~~~g~~~~a~~~~~ 716 (861)
.--..|...|++++..+++.
T Consensus 726 --~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 726 --LAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred --hHHHHHHHcCCHHHHHHHHH
Confidence 22345777888888877765
No 343
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.83 E-value=26 Score=38.76 Aligned_cols=44 Identities=18% Similarity=0.300 Sum_probs=19.6
Q ss_pred ccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 002975 536 RCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKM 581 (861)
Q Consensus 536 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 581 (861)
+.|+++.|.++..+. .+..-|..|..+..+.|+...|.+.|.+.
T Consensus 649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 344444444443332 23344444444444455544444444443
No 344
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=73.70 E-value=1.6 Score=39.50 Aligned_cols=53 Identities=15% Similarity=0.175 Sum_probs=26.1
Q ss_pred HHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHH
Q 002975 496 LSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFK 548 (861)
Q Consensus 496 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 548 (861)
+..+.+.+..+....+++.+.+.+...+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33444444444555555555544434455556666666666554444444444
No 345
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=73.67 E-value=98 Score=31.07 Aligned_cols=117 Identities=12% Similarity=0.038 Sum_probs=51.6
Q ss_pred HHhhcCChhHHHHHHHHHHhCC-----CCCCh--------hhHHHHHHHHHhcCCcchhHHHHHHHHHcCCCCCcchHHH
Q 002975 52 YHLNDGRVQKAIFTLDLMTQKG-----NHPDL--------DTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNS 118 (861)
Q Consensus 52 ~~~~~~~~~~a~~~~~~~~~~~-----~~~~~--------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 118 (861)
...-..++..|+..-++-.+.= ...+. .....=|++++..+++.++....-+-.+.--+.-..+...
T Consensus 44 ~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleL 123 (309)
T PF07163_consen 44 LLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILEL 123 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHH
Confidence 3444567777777766554421 01111 1122235555555555555433222111100111223333
Q ss_pred HHHHHhcCCChHHHHHHHHhc---CCCCCceeHHHHHHHHHh-----cCChhHHHHHH
Q 002975 119 LISLYSKCGDLNEANKIFKSM---GNKRDIVSWSSMISSYVN-----RGKQVDAIHMF 168 (861)
Q Consensus 119 ll~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~li~~~~~-----~g~~~~A~~~~ 168 (861)
-|-.|.|.|....+.++-... +...+..-|.+++..|.. .|.+++|.++.
T Consensus 124 CILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 124 CILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 344556666665555554433 222333445555554443 35555555544
No 346
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.35 E-value=1e+02 Score=30.59 Aligned_cols=242 Identities=14% Similarity=0.189 Sum_probs=131.1
Q ss_pred CCHHHHHHHHHhcCC----CC---eehHHHHHHHHHhcCChhHHHHHHHHHhh---cCCC--CCHHHHHHHHHHhhcccc
Q 002975 437 GRMEDARKAFESLFE----KN---LVSYNTMVDAYAKNLNSEKAFELLHEIED---TGVG--TSAYTFASLLSGASSIGA 504 (861)
Q Consensus 437 g~~~~A~~~~~~~~~----~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~--p~~~t~~~ll~a~~~~~~ 504 (861)
...++|+.-|+++.+ +. ....-.||..+.+.+++++.++.+++|.. ..+. -+..+.++++.-.+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 355666666655522 11 12344567777777778777777777742 1121 234456666666655555
Q ss_pred hHHHHHHHHHHHH----h-CCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--------CC-------chHHHHHHHH
Q 002975 505 IGKGEQIHARIIK----S-GFESNHCIYNALISMYSRCANVEAAFQVFKEMED--------RN-------VISWTSMITG 564 (861)
Q Consensus 505 ~~~a~~~~~~~~~----~-~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~-------~~~~~~li~~ 564 (861)
.+.-..+++.-.+ . +-..--.+-+-|...|...|++..-.++++++.+ .| ...|..=|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 5555554443221 1 1111123345567777777887777777776641 11 2356666777
Q ss_pred HHhcCChHHHHHHHHHHHHcC-CCCChHHHHHHHHHH-----HhcCCHHHHHHHHHHHHhhcCCCCChh-----HHHHHH
Q 002975 565 FAKHGFAARALEIFYKMLADG-IKPNGITYIAVLSAC-----SHAGLISEGWKHFRSMYDEHGIVQRME-----HYACMV 633 (861)
Q Consensus 565 ~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~-----~~~g~~~~a~~~~~~m~~~~~~~p~~~-----~~~~l~ 633 (861)
|....+-.+-..+|++.+... --|-+ ....++.-| .+.|.+++|..-|-+.-+.|.-.-++. -|-.|.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 777777777778888776532 22333 334456655 356788887754433333443332222 255556
Q ss_pred HHhhhcCC----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Q 002975 634 DLLGRSGS----LTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQD 688 (861)
Q Consensus 634 ~~~~r~g~----~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 688 (861)
+++.+.|- -.||.- ....|.......|+.+|... +. ..|+++++-+
T Consensus 280 NMLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~N-dI----~eFE~Il~~~ 329 (440)
T KOG1464|consen 280 NMLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQNN-DI----IEFERILKSN 329 (440)
T ss_pred HHHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhcc-cH----HHHHHHHHhh
Confidence 66666652 112210 01345566777788887654 33 3355555543
No 347
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=73.35 E-value=2e+02 Score=34.00 Aligned_cols=181 Identities=13% Similarity=0.107 Sum_probs=93.4
Q ss_pred cCCHHHHHHHHHhcc----CCCc-------hHHHHHHHH-HHhcCChHHHHHHHHHHHHcC----CCCChHHHHHHHHHH
Q 002975 537 CANVEAAFQVFKEME----DRNV-------ISWTSMITG-FAKHGFAARALEIFYKMLADG----IKPNGITYIAVLSAC 600 (861)
Q Consensus 537 ~g~~~~A~~~~~~~~----~~~~-------~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g----~~p~~~t~~~ll~a~ 600 (861)
..++++|..+..+.. .++. ..|+.+-.. ....|++++|+++-+.....= ..+..+.+..+..+.
T Consensus 428 ~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~ 507 (894)
T COG2909 428 QHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAA 507 (894)
T ss_pred ccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHH
Confidence 455666666555443 2221 245555332 235677788877777766531 122344556666666
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHH-----HHhhhcCCHHHHH--HHHHhC-----CCCC----CHHHHHHH
Q 002975 601 SHAGLISEGWKHFRSMYDEHGIVQRMEHYACMV-----DLLGRSGSLTEAL--EFIRSM-----PLSA----DVLVWRTF 664 (861)
Q Consensus 601 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~-----~~~~r~g~~~eA~--~~~~~~-----~~~p----~~~~~~~l 664 (861)
.-.|++++|..+.....+ ..-.-+..++...+ ..+..+|....|. ..+... ..+| -..+...+
T Consensus 508 ~~~G~~~~Al~~~~~a~~-~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~l 586 (894)
T COG2909 508 HIRGELTQALALMQQAEQ-MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQL 586 (894)
T ss_pred HHhchHHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Confidence 667888888777665542 22222333333222 2455566333222 222221 1122 12333334
Q ss_pred HHHHHHhCCHHHHHHHHHHHhcc----CCCC--C-chHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 665 LGACRVHGDTELGKHAAEMILEQ----DPQD--P-AAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 665 l~~~~~~g~~~~a~~~~~~~~~~----~p~~--~-~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
++++.+ .+.++..+.+.+++ -|.. + ..+..|+.++...|+.++|......+..-
T Consensus 587 l~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 587 LRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 444333 55555555555543 2222 1 12337889999999999998887777653
No 348
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=73.16 E-value=14 Score=34.24 Aligned_cols=45 Identities=20% Similarity=0.123 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCC----hhHHHHHHHHH
Q 002975 674 TELGKHAAEMILEQDPQDPAAHILLSNLYASAGH----WEYVANIRKRM 718 (861)
Q Consensus 674 ~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~----~~~a~~~~~~m 718 (861)
++.|+.-+++++.++|+...++..|+++|...+. -.+|.+.+++.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 5677788888899999999999999999988765 23444444444
No 349
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=72.39 E-value=41 Score=28.10 Aligned_cols=87 Identities=11% Similarity=0.137 Sum_probs=48.3
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002975 504 AIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLA 583 (861)
Q Consensus 504 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 583 (861)
..++|..|.+-+...+- ....+--.-+..+...|++++|...=.....||...|-+|- -.+.|..+++...+.++-.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHh
Confidence 45666666666666542 23333334445566778888884444444567888776553 3467777777777777766
Q ss_pred cCCCCChHHHH
Q 002975 584 DGIKPNGITYI 594 (861)
Q Consensus 584 ~g~~p~~~t~~ 594 (861)
+| .|....|.
T Consensus 98 ~g-~~~~q~Fa 107 (116)
T PF09477_consen 98 SG-SPELQAFA 107 (116)
T ss_dssp -S-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 55 44444443
No 350
>PRK09687 putative lyase; Provisional
Probab=72.37 E-value=1.2e+02 Score=31.05 Aligned_cols=137 Identities=11% Similarity=-0.010 Sum_probs=77.3
Q ss_pred CeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhccc-chHHHHHHHHHHHHhCCCCchhHHHHHH
Q 002975 453 NLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIG-AIGKGEQIHARIIKSGFESNHCIYNALI 531 (861)
Q Consensus 453 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li 531 (861)
+...-...+.++.+.++ .+|+..+-.+.. .+|...-...+.++.+.+ ....+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 33333444555555554 455565555554 244444444444444432 12334444444432 55677777788
Q ss_pred HHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Q 002975 532 SMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACS 601 (861)
Q Consensus 532 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 601 (861)
.++++.|+.+..-.+.+.+..++ .....+.++...|.. +|+..+.++.+. .||...-...+.+|.
T Consensus 214 ~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 214 IGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 88888888544344444444444 234677888888874 788888888873 457665555555554
No 351
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=72.29 E-value=8.6 Score=41.22 Aligned_cols=87 Identities=13% Similarity=0.037 Sum_probs=65.9
Q ss_pred HHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH-HHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHH
Q 002975 634 DLLGRSGSLTEALEFIRSM-PLSADVLVWRTFL-GACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYV 711 (861)
Q Consensus 634 ~~~~r~g~~~eA~~~~~~~-~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a 711 (861)
+-+...+.++.|..++.++ ..+|+-.+|.+.= .++.+.+++..|..-+.++++++|.....|+.-+..+.+.+++.+|
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 3445566777777777665 3677655444433 5677888899999999999999999999999888999999999999
Q ss_pred HHHHHHHHh
Q 002975 712 ANIRKRMKE 720 (861)
Q Consensus 712 ~~~~~~m~~ 720 (861)
...++....
T Consensus 92 ~~~l~~~~~ 100 (476)
T KOG0376|consen 92 LLDLEKVKK 100 (476)
T ss_pred HHHHHHhhh
Confidence 888875543
No 352
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=70.22 E-value=9.1 Score=31.21 Aligned_cols=43 Identities=23% Similarity=0.275 Sum_probs=29.2
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 678 KHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 678 ~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
...+++.++.+|+|...-..|+..|...|++++|.+.+-.+..
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456667777788777777888888888888887776555543
No 353
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=69.97 E-value=63 Score=29.03 Aligned_cols=19 Identities=21% Similarity=0.408 Sum_probs=10.9
Q ss_pred HhcCCChHHHHHHHHhcCC
Q 002975 123 YSKCGDLNEANKIFKSMGN 141 (861)
Q Consensus 123 ~~~~g~~~~A~~~~~~~~~ 141 (861)
+...|+|.+|.++|+++..
T Consensus 54 ~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 54 LIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHcCCHHHHHHHHHhhhc
Confidence 3455666666666666544
No 354
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=69.95 E-value=47 Score=36.73 Aligned_cols=127 Identities=15% Similarity=0.182 Sum_probs=66.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHhccC--CCchHH---HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 002975 528 NALISMYSRCANVEAAFQVFKEMED--RNVISW---TSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSH 602 (861)
Q Consensus 528 ~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 602 (861)
..|+.-|.+.+++++|..++..|.= -....| +.+.+.+.+..-..+....++.++-.=..|....-.....-|..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d 491 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD 491 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH
Confidence 4577789999999999999999862 122333 33444455554455555556665554343432211111111211
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHH
Q 002975 603 AGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGK 678 (861)
Q Consensus 603 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 678 (861)
--.+-|+++|.. +.|.+++++|.-+--.+. +...+--+-......|+.++|.
T Consensus 492 -~V~~~aRRfFhh--------------------LLR~~rfekAFlLAvdi~---~~DLFmdlh~~A~~~ge~~La~ 543 (545)
T PF11768_consen 492 -PVSDLARRFFHH--------------------LLRYQRFEKAFLLAVDIG---DRDLFMDLHYLAKDKGELALAE 543 (545)
T ss_pred -HHHHHHHHHHHH--------------------HHHhhHHHHHHHHHHhcc---chHHHHHHHHHHHhccchhhhh
Confidence 112223444433 346778888877765553 2222223333345566666654
No 355
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=69.66 E-value=12 Score=40.84 Aligned_cols=72 Identities=15% Similarity=0.092 Sum_probs=52.4
Q ss_pred HHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 002975 632 MVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYA 703 (861)
Q Consensus 632 l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~ 703 (861)
|..++.+.|...+|..++.+.. ....+.+..++.+++....|++.|++.++++++++|+++..-..|-.+-+
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 4445555555666666655432 23345677888899999999999999999999999999888776655544
No 356
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=68.62 E-value=1.1e+02 Score=30.98 Aligned_cols=106 Identities=14% Similarity=-0.002 Sum_probs=51.6
Q ss_pred HcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHH----hhcCCCCCHHHHHHHHHHhhcccchH-HHH
Q 002975 435 RSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEI----EDTGVGTSAYTFASLLSGASSIGAIG-KGE 509 (861)
Q Consensus 435 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~p~~~t~~~ll~a~~~~~~~~-~a~ 509 (861)
+.+++++|.+++..- ...+.+.|+...|-++-.-| .+.+.+.|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 456666666665432 44566777776665544433 33466667666666665555443222 233
Q ss_pred HHHHHHHHh---C--CCCchhHHHHHHHHHHccCCHHHHHHHHHhcc
Q 002975 510 QIHARIIKS---G--FESNHCIYNALISMYSRCANVEAAFQVFKEME 551 (861)
Q Consensus 510 ~~~~~~~~~---~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 551 (861)
.+.+.+++. + -.-|+.....+...|.+.|++.+|+.-|-.-.
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~ 117 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT 117 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 344444331 1 11355666667777777777777666554443
No 357
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=68.58 E-value=1.2e+02 Score=32.46 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=33.3
Q ss_pred chHHHHHHHHhcCCChHHHHHHHHhcCCCCCc----eeHHHHHHHHHhcCChhHHHHHHHHHH
Q 002975 114 VILNSLISLYSKCGDLNEANKIFKSMGNKRDI----VSWSSMISSYVNRGKQVDAIHMFVEML 172 (861)
Q Consensus 114 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~ 172 (861)
.+-+.-...|.......+..+.|-.=.....+ .-.|-++.-|+..|+..+|.++.+++.
T Consensus 179 qV~~~aeksylsap~hae~ve~~wGg~~n~t~EEvK~kIn~~l~eyv~~getrea~rciR~L~ 241 (645)
T KOG0403|consen 179 QVINTAEKSYLSAPHHAELVELFWGGETNATVEEVKNKINGNLIEYVEIGETREACRCIRELG 241 (645)
T ss_pred hHHHHHHhhccCCCchhhHHHhhhCCCccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhC
Confidence 34555566666555554444444221111111 125667777888888888888877764
No 358
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.28 E-value=1.1e+02 Score=28.98 Aligned_cols=87 Identities=11% Similarity=0.017 Sum_probs=56.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhh
Q 002975 562 ITGFAKHGFAARALEIFYKMLADGIKPNG----ITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLG 637 (861)
Q Consensus 562 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~ 637 (861)
...+...|++++|+.-++..+.. .-|. .+=..|.......|.+|+|+..++... ..+..+ .....-.|.|.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~--~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ--TKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAA--IVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHH--HHHHHhhhHHH
Confidence 45677888888888888877652 2221 222334556677888888888887665 212222 12223467888
Q ss_pred hcCCHHHHHHHHHhCC
Q 002975 638 RSGSLTEALEFIRSMP 653 (861)
Q Consensus 638 r~g~~~eA~~~~~~~~ 653 (861)
..|+-++|..-+++..
T Consensus 171 ~kg~k~~Ar~ay~kAl 186 (207)
T COG2976 171 AKGDKQEARAAYEKAL 186 (207)
T ss_pred HcCchHHHHHHHHHHH
Confidence 8999999988887763
No 359
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.73 E-value=2.2e+02 Score=32.59 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc-CChhHHHHHHHHHHhCCCccCC
Q 002975 673 DTELGKHAAEMILEQDPQDPAAHILLSNLYASA-GHWEYVANIRKRMKERNLIKEA 727 (861)
Q Consensus 673 ~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~-g~~~~a~~~~~~m~~~~~~~~~ 727 (861)
+.+.|...++++-+.+ ++.+...++..|.-. ++++.+.-.+..+++.|.+-..
T Consensus 379 ~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q 432 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQ 432 (552)
T ss_pred CHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHh
Confidence 7777888888877777 444455555544333 7777777777777766654443
No 360
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=67.71 E-value=39 Score=36.14 Aligned_cols=119 Identities=18% Similarity=0.156 Sum_probs=66.8
Q ss_pred cCChHHHH-HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHH
Q 002975 568 HGFAARAL-EIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEAL 646 (861)
Q Consensus 568 ~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~ 646 (861)
.|+...|- ++|.-+....-.|+.+...+.| .++.|.++.+.+.+..... -+.....+..|++.-+.+-|+.++|.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHH
Confidence 44444443 3344444433355555444443 4567777777766654431 22334455666777777777777777
Q ss_pred HHHHhCCC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Q 002975 647 EFIRSMPL--SADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ 690 (861)
Q Consensus 647 ~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 690 (861)
..-+.|.. -.++.+........+..|-++++...+++++.++|.
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 77666531 113334444444556667777777777777777765
No 361
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.60 E-value=1.2e+02 Score=29.23 Aligned_cols=122 Identities=15% Similarity=0.140 Sum_probs=66.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC----ChhHHHHH
Q 002975 558 WTSMITGFAKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ----RMEHYACM 632 (861)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~l 632 (861)
.+..++.+.+.+...+|+...++-.+. +| |..+-..++..++-.|++++|..-++..- .+.| ....|..+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~l 78 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRHL 78 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHHH
Confidence 344566667777777777777766663 44 34455556677777777777776555443 2233 23344444
Q ss_pred HHHhhhcCCHHHHH-HHHHhC--C---CCCCHHHHHH-HHHHHHH--hCCHHHHHHHHHHHhccCCCCC
Q 002975 633 VDLLGRSGSLTEAL-EFIRSM--P---LSADVLVWRT-FLGACRV--HGDTELGKHAAEMILEQDPQDP 692 (861)
Q Consensus 633 ~~~~~r~g~~~eA~-~~~~~~--~---~~p~~~~~~~-ll~~~~~--~g~~~~a~~~~~~~~~~~p~~~ 692 (861)
|+. +.+. ++|..- | ..| ...|-. |+.+..- -|.-+.....-+++++.-|...
T Consensus 79 ir~-------ea~R~evfag~~~Pgflg~p-~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 79 IRC-------EAARNEVFAGGAVPGFLGGP-SPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred HHH-------HHHHHHHhccCCCCCCcCCC-CHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 432 2222 223221 2 122 345555 4444333 3455656667788888777643
No 362
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=67.18 E-value=55 Score=35.14 Aligned_cols=139 Identities=14% Similarity=0.135 Sum_probs=95.5
Q ss_pred hcCCHHHHH-HHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHH
Q 002975 602 HAGLISEGW-KHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGK 678 (861)
Q Consensus 602 ~~g~~~~a~-~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~ 678 (861)
..|++-.|- +++..+. .+.-.|+.... ....+..-|.++.|...+.... +.....+...++......|+.+.|.
T Consensus 301 ~~gd~~aas~~~~~~lr-~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALR-NQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHH-hCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 356655554 4555554 55555554333 2345667899999999987763 3344567778888888899999999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEEeCC
Q 002975 679 HAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSWIEADNKVHKFHVGE 745 (861)
Q Consensus 679 ~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~ 745 (861)
..++.++.-+-++++....-+---...|-+|++.-.++.+-..+...+.| |+..-.....|-.|+
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g--~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG--WVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc--ceeeeccceeccCcc
Confidence 99999998877777666555555566788899999998886655544444 665555556666654
No 363
>PHA02875 ankyrin repeat protein; Provisional
Probab=65.93 E-value=2.1e+02 Score=31.28 Aligned_cols=140 Identities=11% Similarity=0.035 Sum_probs=73.1
Q ss_pred HHHHhhcCChhHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCCcchhHHHHHHHHHcCCCCCcc--hHHHHHHHHhc
Q 002975 50 LIYHLNDGRVQKAIFTLDLMTQKGNHPDLDT--YSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSV--ILNSLISLYSK 125 (861)
Q Consensus 50 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~ 125 (861)
+..++..|+.+-+..+ .+.|..++... -.+.|..++..|+.+.+ ..+.+.|..|+.. ...+.+...++
T Consensus 6 L~~A~~~g~~~iv~~L----l~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~ 77 (413)
T PHA02875 6 LCDAILFGELDIARRL----LDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVE 77 (413)
T ss_pred HHHHHHhCCHHHHHHH----HHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHH
Confidence 4456667776554444 44565554422 34455666667776544 4446667655432 22344566678
Q ss_pred CCChHHHHHHHHhcCCCC---CceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccH--HHHHHHhcCCcchhhhh
Q 002975 126 CGDLNEANKIFKSMGNKR---DIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCF--SAVIRACSNTENVAIGH 200 (861)
Q Consensus 126 ~g~~~~A~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~ 200 (861)
.|+.+.+..+++.-.... +..-++.| ...+..|+. ++++.+.+.|..|+.... .+.+...+..|+.+..+
T Consensus 78 ~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL-~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~ 152 (413)
T PHA02875 78 EGDVKAVEELLDLGKFADDVFYKDGMTPL-HLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE 152 (413)
T ss_pred CCCHHHHHHHHHcCCcccccccCCCCCHH-HHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 899888888876543211 11123333 333455554 455556667777654321 12333344455554444
Q ss_pred hh
Q 002975 201 II 202 (861)
Q Consensus 201 ~~ 202 (861)
.+
T Consensus 153 ~L 154 (413)
T PHA02875 153 LL 154 (413)
T ss_pred HH
Confidence 33
No 364
>PF15469 Sec5: Exocyst complex component Sec5
Probab=64.30 E-value=1.3e+02 Score=28.38 Aligned_cols=87 Identities=11% Similarity=0.180 Sum_probs=42.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCC
Q 002975 595 AVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGD 673 (861)
Q Consensus 595 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 673 (861)
.-+.-|.+.|+++.+...|.+....++-.. ....+.. -+.+..+.++.. -..+|..|.... ..
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~---------v~~eve~ii~~~----r~~l~~~L~~~~---~s 154 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQK---------VWSEVEKIIEEF----REKLWEKLLSPP---SS 154 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHH---------HHHHHHHHHHHH----HHHHHHHHhCCC---CC
Confidence 345556667777777777766653332221 1111111 123333333322 112333332222 45
Q ss_pred HHHHHHHHHHHhccCCCCCchHHH
Q 002975 674 TELGKHAAEMILEQDPQDPAAHIL 697 (861)
Q Consensus 674 ~~~a~~~~~~~~~~~p~~~~~~~~ 697 (861)
.+....+.+.+++++|++..++..
T Consensus 155 ~~~~~~~i~~Ll~L~~~~dPi~~~ 178 (182)
T PF15469_consen 155 QEEFLKLIRKLLELNVEEDPIWYW 178 (182)
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHH
Confidence 677777778888888765444443
No 365
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=64.26 E-value=31 Score=33.58 Aligned_cols=63 Identities=19% Similarity=0.183 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHh-------ccC--CC----CCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 658 VLVWRTFLGACRVHGDTELGKHAAEMIL-------EQD--PQ----DPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 658 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~--p~----~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+.++--+.+.|+..|+.+.-...+++++ +.+ |. ......++|.++.+.|++++|.+.+..+-.
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 4466667888999988655555555554 332 22 235667899999999999999999998765
No 366
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=62.41 E-value=1.1e+02 Score=32.94 Aligned_cols=51 Identities=10% Similarity=0.003 Sum_probs=27.8
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChH--HHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 002975 566 AKHGFAARALEIFYKMLADGIKPNGI--TYIAVLSACS--HAGLISEGWKHFRSMY 617 (861)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~ 617 (861)
.+.+++..|.++|+++... +.++.. .+..+..+|. ..-++++|.+.++...
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3566677777777777665 444433 2333333332 3345666666666554
No 367
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=62.27 E-value=3e+02 Score=31.96 Aligned_cols=23 Identities=17% Similarity=0.462 Sum_probs=16.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHH
Q 002975 697 LLSNLYASAGHWEYVANIRKRMK 719 (861)
Q Consensus 697 ~L~~~y~~~g~~~~a~~~~~~m~ 719 (861)
.+.+.|...|..++|...+....
T Consensus 582 ~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 582 MLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHH
Confidence 45556777888888887776553
No 368
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=62.05 E-value=63 Score=30.77 Aligned_cols=73 Identities=8% Similarity=-0.028 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--CCChhHHHHHHHHhhhcCCHHHH
Q 002975 572 ARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGI--VQRMEHYACMVDLLGRSGSLTEA 645 (861)
Q Consensus 572 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~~~~~~~l~~~~~r~g~~~eA 645 (861)
++|...|-++...+.--+......|.. |....+.+++++++....+.++- .++++.+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455555555555543333333333333 33344555666655555432211 23444455555555555555444
No 369
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=61.94 E-value=1.1e+02 Score=31.23 Aligned_cols=169 Identities=14% Similarity=0.151 Sum_probs=81.8
Q ss_pred hcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCC--chHH--HHHHHHHHhcCChHHHH
Q 002975 500 SSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRN--VISW--TSMITGFAKHGFAARAL 575 (861)
Q Consensus 500 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--~~~~--~~li~~~~~~g~~~~A~ 575 (861)
.....+.+|+.++++..+.+ ..+|+ +..+.+.--...+.+.++| +.+| ..|..+-.+.|+..+|.
T Consensus 227 EEa~Ti~~AE~l~k~ALka~----e~~yr-------~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~ 295 (556)
T KOG3807|consen 227 EEATTIVDAERLFKQALKAG----ETIYR-------QSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAV 295 (556)
T ss_pred hhhhhHHHHHHHHHHHHHHH----HHHHh-------hHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHH
Confidence 34455677788888777764 11222 2222221112222333333 3344 23444455788888888
Q ss_pred HHHHHHHHcCCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC
Q 002975 576 EIFYKMLADGIKPNG---ITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM 652 (861)
Q Consensus 576 ~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~ 652 (861)
+.|+.+.+. .|-. .....++.+|....-+.+...++-+-- +... |...+ -|.-.++. ++..+-++
T Consensus 296 K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYD-disl-PkSA~-icYTaALL------K~RAVa~k- 363 (556)
T KOG3807|consen 296 KIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYD-DISL-PKSAA-ICYTAALL------KTRAVSEK- 363 (556)
T ss_pred HHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccC-cchHH-HHHHHHHH------HHHHHHhh-
Confidence 888887763 3321 133456777766655555444443322 1111 22111 11111221 22223233
Q ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHH
Q 002975 653 PLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILL 698 (861)
Q Consensus 653 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 698 (861)
+.||..+-..|-.+ .--|.++..++++.+|.-+.....+
T Consensus 364 -Fspd~asrRGLS~A------E~~AvEAihRAvEFNPHVPkYLLE~ 402 (556)
T KOG3807|consen 364 -FSPETASRRGLSTA------EINAVEAIHRAVEFNPHVPKYLLEM 402 (556)
T ss_pred -cCchhhhhccccHH------HHHHHHHHHHHhhcCCCCcHHHHHH
Confidence 25554443333222 2346777888899999877665543
No 370
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=61.71 E-value=1.9e+02 Score=29.40 Aligned_cols=57 Identities=12% Similarity=0.108 Sum_probs=32.6
Q ss_pred CCCcchhhHHHHHHHHcCCHHHHHHHHHhc-----CCCCeehHHHHHHHHHhcCChhHHHHH
Q 002975 420 ALDDCVGNSLISMYARSGRMEDARKAFESL-----FEKNLVSYNTMVDAYAKNLNSEKAFEL 476 (861)
Q Consensus 420 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~l 476 (861)
.++..+....+..+++.+++..-.++++.. +..|...|..+|......|+..-...+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 444555555556666666666666655544 223556677777777777765444333
No 371
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=61.56 E-value=1.5e+02 Score=31.69 Aligned_cols=155 Identities=12% Similarity=0.069 Sum_probs=81.9
Q ss_pred CCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHH---hcCChHHHHHHHHHHHHcCCCCChHHHHH--
Q 002975 521 ESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFA---KHGFAARALEIFYKMLADGIKPNGITYIA-- 595 (861)
Q Consensus 521 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-- 595 (861)
+-.+.+.-.+-..+...|+.+.|.+++++..---..+|......+. ..|.. + +.-...-|..-|.+
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~--------r-L~~~~~eNR~fflal~ 107 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNC--------R-LDYRRPENRQFFLALF 107 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcc--------c-cCCccccchHHHHHHH
Confidence 4456666667777778888888777776643100000000000000 00000 0 00001113333333
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHHhhcCCCCC--hhHHHHHHHHh-hhcCCHHHHHHHHHhCCC---------CCCHHHHH
Q 002975 596 -VLSACSHAGLISEGWKHFRSMYDEHGIVQR--MEHYACMVDLL-GRSGSLTEALEFIRSMPL---------SADVLVWR 662 (861)
Q Consensus 596 -ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~-~r~g~~~eA~~~~~~~~~---------~p~~~~~~ 662 (861)
.+..+.+.|.+..|.++.+-+. .+.|+ +..--.+||.| .|+++++--+++++.... -|+ ..+.
T Consensus 108 r~i~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a~S 183 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FAFS 183 (360)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HHHH
Confidence 3456677788888888877776 45554 33344456655 577788777777776432 122 2333
Q ss_pred HHHHHHHHhCCH---------------HHHHHHHHHHhccCC
Q 002975 663 TFLGACRVHGDT---------------ELGKHAAEMILEQDP 689 (861)
Q Consensus 663 ~ll~~~~~~g~~---------------~~a~~~~~~~~~~~p 689 (861)
.-+. +...++. +.|...+++++...|
T Consensus 184 ~aLA-~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 184 IALA-YFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHHH-HHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 3333 3334444 889999999998888
No 372
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.54 E-value=11 Score=43.16 Aligned_cols=94 Identities=18% Similarity=0.250 Sum_probs=61.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHH
Q 002975 596 VLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTE 675 (861)
Q Consensus 596 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 675 (861)
+|.-+-+.|-.+-|+.+.+.=.. -.++...+|+++.|++.-++.. |..+|..|+.....+||..
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~t-------------RF~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~ 689 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERT-------------RFELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQ 689 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcch-------------heeeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchH
Confidence 34444566666666655432221 1345567899999998888774 6779999999999999999
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHH
Q 002975 676 LGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVAN 713 (861)
Q Consensus 676 ~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~ 713 (861)
.|+..+++....+ .|+-+|.-.|+.++-.+
T Consensus 690 IaEm~yQ~~knfe--------kLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 690 IAEMCYQRTKNFE--------KLSFLYLITGNLEKLSK 719 (1202)
T ss_pred HHHHHHHHhhhhh--------heeEEEEEeCCHHHHHH
Confidence 9998888765433 34444555555444333
No 373
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=60.78 E-value=75 Score=26.27 Aligned_cols=52 Identities=13% Similarity=0.096 Sum_probs=35.0
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcC
Q 002975 431 SMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTG 484 (861)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 484 (861)
..+...|++++|..+.+.+..||+..|-+|-. .+.|..+++..-+.+|..+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 44556788888888888887788877766644 34566666666666666555
No 374
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=59.77 E-value=36 Score=34.83 Aligned_cols=89 Identities=11% Similarity=0.033 Sum_probs=69.6
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhCC----CCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 002975 629 YACMVDLLGRSGSLTEALEFIRSMP----LSA--DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLY 702 (861)
Q Consensus 629 ~~~l~~~~~r~g~~~eA~~~~~~~~----~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y 702 (861)
|--=.+-|.+..++..|.+.|.+-. ..| +.+.|+.-..+-...||+..++.-..+++.++|.+..+|.-=+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 3333556778888889988887652 233 3566766666667789999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHH
Q 002975 703 ASAGHWEYVANIRKR 717 (861)
Q Consensus 703 ~~~g~~~~a~~~~~~ 717 (861)
....++++|...-+.
T Consensus 164 ~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 164 LELERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999998777665543
No 375
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=59.64 E-value=18 Score=21.36 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002975 557 SWTSMITGFAKHGFAARALEIFYKMLA 583 (861)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 583 (861)
.|..+...+...|++++|...|++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 345555566666666666666665554
No 376
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=59.39 E-value=2.1e+02 Score=29.12 Aligned_cols=54 Identities=9% Similarity=0.220 Sum_probs=35.7
Q ss_pred CCchhHHHHHHHHHHccCCHHHHHHHHHhcc-----CCCchHHHHHHHHHHhcCChHHH
Q 002975 521 ESNHCIYNALISMYSRCANVEAAFQVFKEME-----DRNVISWTSMITGFAKHGFAARA 574 (861)
Q Consensus 521 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A 574 (861)
.++..+...+++.+++.+++.+-.++++... ..|...|..+|......|+..-.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~ 257 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVM 257 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHH
Confidence 4556666667777777777777777766544 24666777777777777775443
No 377
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=59.38 E-value=25 Score=34.12 Aligned_cols=82 Identities=12% Similarity=0.096 Sum_probs=61.6
Q ss_pred cCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHH
Q 002975 639 SGSLTEALEFIRSM-PLSADVLVW-RTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRK 716 (861)
Q Consensus 639 ~g~~~eA~~~~~~~-~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~ 716 (861)
..++++|+..+.+. ...|...+| ..=+-.+.+.++.+....-..+++++.|+....+..|+........+++|..++.
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 34455555554443 366766444 3444455667889999999999999999999999999999999999999999887
Q ss_pred HHHh
Q 002975 717 RMKE 720 (861)
Q Consensus 717 ~m~~ 720 (861)
+...
T Consensus 103 ra~s 106 (284)
T KOG4642|consen 103 RAYS 106 (284)
T ss_pred HHHH
Confidence 6643
No 378
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=58.87 E-value=35 Score=32.69 Aligned_cols=63 Identities=21% Similarity=0.162 Sum_probs=43.0
Q ss_pred HHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCc
Q 002975 631 CMVDLLGRSGSLTEALEFIRSM-PLSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPA 693 (861)
Q Consensus 631 ~l~~~~~r~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 693 (861)
.-+.-+.+.+.+++|+...+.- ..+| |...-..|...++..|++++|..-++-+-++.|++..
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 3455667777788877766543 3344 5556666777778888888888777777777776543
No 379
>PRK13342 recombination factor protein RarA; Reviewed
Probab=58.51 E-value=2.8e+02 Score=30.34 Aligned_cols=100 Identities=12% Similarity=0.116 Sum_probs=58.5
Q ss_pred CCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhc---CCCCeehHHHHH
Q 002975 385 APNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESL---FEKNLVSYNTMV 461 (861)
Q Consensus 385 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li 461 (861)
..+......++..+ .|+...+..+++.+...+-.. ..+...+++... ..++...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~I----------------t~~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSI----------------TLELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCC----------------CHHHHHHHHhhhhhccCCCccHHHHHH
Confidence 44555555554443 688888888877765431111 112222222221 122333455566
Q ss_pred HHHHh---cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcc
Q 002975 462 DAYAK---NLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSI 502 (861)
Q Consensus 462 ~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 502 (861)
+++.+ .++.+.|+..+..|.+.|..|....-..+..++...
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 66665 478999999999999999888876666655555443
No 380
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=57.58 E-value=25 Score=22.81 Aligned_cols=32 Identities=9% Similarity=-0.006 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHH--HHHHhccCCCC
Q 002975 660 VWRTFLGACRVHGDTELGKHA--AEMILEQDPQD 691 (861)
Q Consensus 660 ~~~~ll~~~~~~g~~~~a~~~--~~~~~~~~p~~ 691 (861)
-|-++...+...|+.+.|+.+ ++-+..++|.|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 355667777888888888888 44776666653
No 381
>PRK13342 recombination factor protein RarA; Reviewed
Probab=56.10 E-value=3.1e+02 Score=30.04 Aligned_cols=102 Identities=18% Similarity=0.104 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhc---cCCCchHHHHHH
Q 002975 486 GTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEM---EDRNVISWTSMI 562 (861)
Q Consensus 486 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li 562 (861)
..+......++..+ .|+...+..+++.+...+-..+ .+...+++... .+++...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHHHHhhhhhccCCCccHHHHHH
Confidence 45555555555543 6777777777776654311111 22222222221 122333445556
Q ss_pred HHHHh---cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Q 002975 563 TGFAK---HGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGL 605 (861)
Q Consensus 563 ~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 605 (861)
+++.+ .++.+.|+.++.+|++.|..|..+.-..+..++...|.
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~ 280 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGL 280 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcc
Confidence 66654 47899999999999999988886666655555555443
No 382
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=55.94 E-value=51 Score=29.57 Aligned_cols=51 Identities=16% Similarity=0.174 Sum_probs=42.9
Q ss_pred CCceeHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCcccHHHHHHHhcCC
Q 002975 143 RDIVSWSSMISSYVNRGK-QVDAIHMFVEMLELGFCPNEYCFSAVIRACSNT 193 (861)
Q Consensus 143 ~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 193 (861)
.+..+|++++.+.++..- ---++.+|.-|.+.+.+++..-|..+|++|.+.
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 567789999999977766 446788999999988999999999999998765
No 383
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=55.23 E-value=23 Score=27.73 Aligned_cols=45 Identities=11% Similarity=0.062 Sum_probs=31.3
Q ss_pred HhCCHHHHHHHHHHHhccCCCCCchHHH---HHHHHHHcCChhHHHHH
Q 002975 670 VHGDTELGKHAAEMILEQDPQDPAAHIL---LSNLYASAGHWEYVANI 714 (861)
Q Consensus 670 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~---L~~~y~~~g~~~~a~~~ 714 (861)
..++.+.|+..++++++..++.+.-+.. |..+|+..|++.++.+.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888888877776665554 44567777777776654
No 384
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=54.68 E-value=2.4e+02 Score=28.45 Aligned_cols=125 Identities=22% Similarity=0.130 Sum_probs=57.1
Q ss_pred hcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHH----HHHHHHHHHhCCCCchhHHHHHHHHHHccCC--
Q 002975 466 KNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKG----EQIHARIIKSGFESNHCIYNALISMYSRCAN-- 539 (861)
Q Consensus 466 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~-- 539 (861)
+++++++|++++..-.. .+.+.++...| .-+.+-..+.+.+.+......++..+...+.
T Consensus 2 ~~kky~eAidLL~~Ga~---------------~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~ 66 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGAL---------------ILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEE 66 (260)
T ss_dssp HTT-HHHHHHHHHHHHH---------------HHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-
T ss_pred ccccHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCc
Confidence 56788888888766321 12223333333 2333333444556665555566665554432
Q ss_pred ------HHHHHHHHHhcc--CCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH
Q 002975 540 ------VEAAFQVFKEME--DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEG 609 (861)
Q Consensus 540 ------~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 609 (861)
++.|.+.-+.-. .-|+.....+...|.+.|++.+|...|- .|-.|+...+..++.-....|...+.
T Consensus 67 p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl----~~~~~~~~~~~~ll~~~~~~~~~~e~ 140 (260)
T PF04190_consen 67 PERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFL----LGTDPSAFAYVMLLEEWSTKGYPSEA 140 (260)
T ss_dssp TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHH----TS-HHHHHHHHHHHHHHHHHTSS--H
T ss_pred chHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH----hcCChhHHHHHHHHHHHHHhcCCcch
Confidence 223333321111 1355666777888888888888876652 12233333333344444444444444
No 385
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=54.11 E-value=1.3e+02 Score=25.87 Aligned_cols=61 Identities=15% Similarity=0.043 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHh-------ccCCCCCchHH----HHHHHHHHcCChhHHHHHHHHH
Q 002975 658 VLVWRTFLGACRVHGDTELGKHAAEMIL-------EQDPQDPAAHI----LLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 658 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~----~L~~~y~~~g~~~~a~~~~~~m 718 (861)
...+-.|..++...|+++++...+++++ +++.+....|+ .-+..+...|+.+||.+.++..
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3444445555555555555555554444 45555444443 3345677788999988877643
No 386
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=54.09 E-value=3.3e+02 Score=29.82 Aligned_cols=288 Identities=12% Similarity=0.068 Sum_probs=0.0
Q ss_pred hhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhc----------
Q 002975 380 IQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESL---------- 449 (861)
Q Consensus 380 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---------- 449 (861)
+..+..............-...+.++.-.+++..+...|.....+.+|.-+..|.+.|........=+-.
T Consensus 9 ktq~~~d~~~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~ 88 (696)
T KOG2471|consen 9 KTQAGEDENYSLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPG 88 (696)
T ss_pred ccccccchhHHHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhcccc
Q ss_pred -------CCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHH-----HHHhhcccchHHHHHHHHHHHH
Q 002975 450 -------FEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASL-----LSGASSIGAIGKGEQIHARIIK 517 (861)
Q Consensus 450 -------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-----l~a~~~~~~~~~a~~~~~~~~~ 517 (861)
...+.+.+-...-+|.....+.+|+++...+... +.|=...+... ...+......++|+.+...+.+
T Consensus 89 ~~~~gld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r-~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~ 167 (696)
T KOG2471|consen 89 DVSSGLSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSR-TESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAE 167 (696)
T ss_pred chhcchhhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred h------CCCCchhHHHHHH--------------------------HHHHccCCHHHHHHHHHhcc---CCCchHHHHHH
Q 002975 518 S------GFESNHCIYNALI--------------------------SMYSRCANVEAAFQVFKEME---DRNVISWTSMI 562 (861)
Q Consensus 518 ~------~~~~~~~~~~~li--------------------------~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li 562 (861)
. ....+...-|.++ ..|....++..+..-.+... +......-.--
T Consensus 168 ~~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKs 247 (696)
T KOG2471|consen 168 IEAEKRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKS 247 (696)
T ss_pred HHHhhhccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHH
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChHH--------HHHHHHHHHhcCCHHHHHHHHHHHHh------hcCCCC----
Q 002975 563 TGFAKHGFAARALEIFYKMLADGIKPNGIT--------YIAVLSACSHAGLISEGWKHFRSMYD------EHGIVQ---- 624 (861)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--------~~~ll~a~~~~g~~~~a~~~~~~m~~------~~~~~p---- 624 (861)
.-+.-+|++.+|.+++...--....--..| ++.+.....+.|.+.-+..+|....+ ..|+.|
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Q ss_pred ------ChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 002975 625 ------RMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGAC 668 (861)
Q Consensus 625 ------~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~ 668 (861)
..+..-...-.|...|+.-.|.+.|.+.. +..++..|--|..+|
T Consensus 328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECC 379 (696)
T ss_pred ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHH
No 387
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=53.37 E-value=12 Score=43.99 Aligned_cols=9 Identities=22% Similarity=0.073 Sum_probs=3.7
Q ss_pred HHHHHHhhh
Q 002975 630 ACMVDLLGR 638 (861)
Q Consensus 630 ~~l~~~~~r 638 (861)
..++|+|..
T Consensus 943 Eki~DAyLd 951 (2365)
T COG5178 943 EKIVDAYLD 951 (2365)
T ss_pred HHHHHHHHH
Confidence 334444433
No 388
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.26 E-value=2.3e+02 Score=34.00 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 002975 250 GWTLMITRCTQLGCPRDAIRLFLDMILS 277 (861)
Q Consensus 250 ~~~~li~~~~~~g~~~~A~~l~~~m~~~ 277 (861)
-|..|+.-|...|+.++|++++.+....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 4888999999999999999999998763
No 389
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.23 E-value=4.8e+02 Score=31.43 Aligned_cols=141 Identities=12% Similarity=0.194 Sum_probs=72.6
Q ss_pred ChHHHHHHHHhcCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhhhhhhhhhh
Q 002975 128 DLNEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIYGFLL 207 (861)
Q Consensus 128 ~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 207 (861)
.+++...++.+-+. |..|+..|...|+.++|++++.+.....-.-|... .+.-+.+.+.+.
T Consensus 493 ~vee~e~~L~k~~~------y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~-------------~~~~e~ii~YL~ 553 (877)
T KOG2063|consen 493 DVEEIETVLKKSKK------YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQ-------------LDGLEKIIEYLK 553 (877)
T ss_pred chHHHHHHHHhccc------HHHHHHHHHhccchHHHHHHHHHHhccccccccch-------------hhhHHHHHHHHH
Confidence 45555555555555 99999999999999999999999875310011110 011111333333
Q ss_pred hccCCC--CchhHHHHHHHHhhhCCCCHHHHHHHHhcCCC--CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc
Q 002975 208 KCGYFD--SDVCVGCALIDMFVKGSVDLESAYKVFDKMTE--KNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDR 283 (861)
Q Consensus 208 ~~g~~~--~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 283 (861)
+.+ -+ +-.+.|...+- ..+.+.+.++|-.-.. .....-. -+-.|......+-+...++.+....-.++.
T Consensus 554 ~l~-~~~~~Li~~y~~wvl-----~~~p~~gi~Ift~~~~~~~~sis~~-~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~ 626 (877)
T KOG2063|consen 554 KLG-AENLDLILEYADWVL-----NKNPEAGIQIFTSEDKQEAESISRD-DVLNYLKSKEPKLLIPYLEHLISDNRLTST 626 (877)
T ss_pred Hhc-ccchhHHHHHhhhhh-----ccCchhheeeeeccChhhhccCCHH-HHHHHhhhhCcchhHHHHHHHhHhccccch
Confidence 333 11 11111111111 2345556666644111 0111111 233455666777777788777765555555
Q ss_pred ccHHHHHHHHh
Q 002975 284 FTLSGVVSACS 294 (861)
Q Consensus 284 ~t~~~ll~a~~ 294 (861)
.-.+.++..|+
T Consensus 627 ~lht~ll~ly~ 637 (877)
T KOG2063|consen 627 LLHTVLLKLYL 637 (877)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 390
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=52.04 E-value=1.3e+02 Score=30.19 Aligned_cols=18 Identities=11% Similarity=0.093 Sum_probs=11.1
Q ss_pred HHHHHhcCChhHHHHHHH
Q 002975 461 VDAYAKNLNSEKAFELLH 478 (861)
Q Consensus 461 i~~~~~~g~~~~A~~l~~ 478 (861)
|.+++..+++.+++...-
T Consensus 90 IQALAEmnrWreVLsWvl 107 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVL 107 (309)
T ss_pred HHHHHHHhhHHHHHHHHH
Confidence 566666667666665443
No 391
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=51.64 E-value=2.1e+02 Score=28.13 Aligned_cols=79 Identities=14% Similarity=0.053 Sum_probs=53.0
Q ss_pred cCCHHHHHHHHHhcc--CCCc-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH-HHHHHHHHHHhcCCHHHHHHH
Q 002975 537 CANVEAAFQVFKEME--DRNV-ISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGI-TYIAVLSACSHAGLISEGWKH 612 (861)
Q Consensus 537 ~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~ 612 (861)
..+++.|...|.+.. .|++ .-|+.-+..|.+..+++.+..=-.+.++ +.||.+ ....+..+......+++|+..
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 345666666665544 4655 3456667777888888888777777777 778865 344456666777778888877
Q ss_pred HHHHH
Q 002975 613 FRSMY 617 (861)
Q Consensus 613 ~~~m~ 617 (861)
+.+..
T Consensus 101 Lqra~ 105 (284)
T KOG4642|consen 101 LQRAY 105 (284)
T ss_pred HHHHH
Confidence 77653
No 392
>PRK10941 hypothetical protein; Provisional
Probab=51.57 E-value=93 Score=31.52 Aligned_cols=68 Identities=15% Similarity=0.111 Sum_probs=52.3
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHH
Q 002975 630 ACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHIL 697 (861)
Q Consensus 630 ~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 697 (861)
+.+-..|.+.++++.|+...+.+. ..| |+.-|.--+-.+.+.|....|..-++..++..|+++.+-..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 345567778888888888887763 344 56677777778999999999999999999999988766443
No 393
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=50.73 E-value=46 Score=33.51 Aligned_cols=61 Identities=13% Similarity=0.166 Sum_probs=43.3
Q ss_pred hhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHH
Q 002975 637 GRSGSLTEALEFIRSM-PLSAD-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHIL 697 (861)
Q Consensus 637 ~r~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 697 (861)
.++|+.++|..+|+.+ ...|+ +.+..-+....-.+++.-+|.++|-+++.+.|.|..+.+.
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 3678888888888764 34443 4444445555556678888999999999999988877664
No 394
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=50.00 E-value=1.4e+02 Score=24.30 Aligned_cols=63 Identities=21% Similarity=0.256 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC--CCchHHHHHHHHHHcCChh-HHHHHHHHH
Q 002975 656 ADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ--DPAAHILLSNLYASAGHWE-YVANIRKRM 718 (861)
Q Consensus 656 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~L~~~y~~~g~~~-~a~~~~~~m 718 (861)
.|....-.+...+...|+++.|...+-.+++.+|+ +..+-..|..++...|.-+ -+.+.+++|
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 35567777888899999999999999999988775 4677778888888888754 566666655
No 395
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=49.75 E-value=38 Score=23.19 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=15.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC
Q 002975 561 MITGFAKHGFAARALEIFYKMLADG 585 (861)
Q Consensus 561 li~~~~~~g~~~~A~~~~~~m~~~g 585 (861)
|..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4556666666666666666666543
No 396
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=49.73 E-value=3.3e+02 Score=29.15 Aligned_cols=30 Identities=10% Similarity=-0.218 Sum_probs=22.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChHH
Q 002975 563 TGFAKHGFAARALEIFYKMLADGIKPNGIT 592 (861)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 592 (861)
..+.+.+++..|.++|+++.+....|+...
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~ 167 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLLSAVNHT 167 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcccChhhhh
Confidence 345677889999999999998765555444
No 397
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=49.09 E-value=90 Score=27.06 Aligned_cols=59 Identities=14% Similarity=0.193 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHH
Q 002975 573 RALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMV 633 (861)
Q Consensus 573 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 633 (861)
+..+-++.+..-.+.|++......+.||.+.+++..|.++|+-++.+. .+....|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~--g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC--GAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc--ccHHHHHHHHH
Confidence 344556667777789999999999999999999999999999887443 33333565554
No 398
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=48.67 E-value=3.8e+02 Score=28.95 Aligned_cols=75 Identities=17% Similarity=0.266 Sum_probs=56.8
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHHhCCC--CchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcC
Q 002975 492 FASLLSGASSIGAIGKGEQIHARIIKSGFE--SNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHG 569 (861)
Q Consensus 492 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 569 (861)
...|+.-|...|++.+|.+....+ |++ ....++.+++-+.-+.|+-..-+.++++.-....+|-|.|-.+|.+-.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeL---gmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf~RV~ 588 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKEL---GMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTKGFERVY 588 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHh---CCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhhhhhhhh
Confidence 446777788888888887776554 333 356778888888888888888888888887888888888888887643
No 399
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=48.54 E-value=34 Score=33.01 Aligned_cols=57 Identities=26% Similarity=0.325 Sum_probs=46.5
Q ss_pred HhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Q 002975 635 LLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD 691 (861)
Q Consensus 635 ~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 691 (861)
++...|+.+.|-+++.++. ..| ....|--+...--+.|+.+.|.+++++.++++|+|
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 4556788888888888763 334 56688888888889999999999999999999987
No 400
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=47.71 E-value=72 Score=28.60 Aligned_cols=67 Identities=15% Similarity=0.083 Sum_probs=45.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHH
Q 002975 642 LTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYV 711 (861)
Q Consensus 642 ~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a 711 (861)
-+.|.++++-|. .....-.........|++..|..+.+.++..+|+|..+-.+.+++|...|.-.+.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~ 123 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSEN 123 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SS
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 345566666663 2222233444567789999999999999999999999999999988877755443
No 401
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=47.54 E-value=42 Score=26.33 Aligned_cols=14 Identities=29% Similarity=0.294 Sum_probs=6.0
Q ss_pred ChHHHHHHHHHHHH
Q 002975 570 FAARALEIFYKMLA 583 (861)
Q Consensus 570 ~~~~A~~~~~~m~~ 583 (861)
+.++|+..|+..++
T Consensus 21 ~~~~Al~~W~~aL~ 34 (80)
T PF10579_consen 21 ETQQALQKWRKALE 34 (80)
T ss_pred hHHHHHHHHHHHHh
Confidence 33444444444443
No 402
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=46.93 E-value=5.7e+02 Score=30.47 Aligned_cols=217 Identities=10% Similarity=0.013 Sum_probs=102.0
Q ss_pred HHcCCHHHHHHHHHhc----CCCCe-------ehHHHHHHH-HHhcCChhHHHHHHHHHhhc----CCCCCHHHHHHHHH
Q 002975 434 ARSGRMEDARKAFESL----FEKNL-------VSYNTMVDA-YAKNLNSEKAFELLHEIEDT----GVGTSAYTFASLLS 497 (861)
Q Consensus 434 ~~~g~~~~A~~~~~~~----~~~~~-------~~~~~li~~-~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~ll~ 497 (861)
....++++|..+..+. +.++. ..|+++-.. ....|++++|+++.+..... -..+..+.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3456666666666554 22221 245555332 23456777777776665542 12344455556666
Q ss_pred HhhcccchHHHHHHHHHHHHhCCCCchhHHHHHH-----HHHHccCCH--HHHHHHHHhcc-----CCCc-----hHHHH
Q 002975 498 GASSIGAIGKGEQIHARIIKSGFESNHCIYNALI-----SMYSRCANV--EAAFQVFKEME-----DRNV-----ISWTS 560 (861)
Q Consensus 498 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-----~~y~~~g~~--~~A~~~~~~~~-----~~~~-----~~~~~ 560 (861)
+..-.|++++|..+.+...+..-.-++..+..+. ..+...|+. ++....|.... +.-. -.+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 6666777777777766665432222333222221 234445532 22233333322 1111 23333
Q ss_pred HHHHHHhc-CChHHHHHHHHHHHHcCCCCChHH--HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-hhHHHH---HH
Q 002975 561 MITGFAKH-GFAARALEIFYKMLADGIKPNGIT--YIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR-MEHYAC---MV 633 (861)
Q Consensus 561 li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~---l~ 633 (861)
+..++.+. +...+|-.-++--......|-... +..++......|++++|....+++..- ...++ ..-|.+ .+
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l-~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL-LLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-hcCCCCCchHHHHHHHh
Confidence 34444331 112222222222222111121112 224566667788888888887777632 22221 111222 22
Q ss_pred H--HhhhcCCHHHHHHHHHh
Q 002975 634 D--LLGRSGSLTEALEFIRS 651 (861)
Q Consensus 634 ~--~~~r~g~~~eA~~~~~~ 651 (861)
. .-..+|+.++|.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 2 33567787777777665
No 403
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=46.92 E-value=32 Score=20.88 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 002975 672 GDTELGKHAAEMILEQDPQDPAAHILLSN 700 (861)
Q Consensus 672 g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 700 (861)
|+.+.+..+++++++..|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46677888888888888877766665443
No 404
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=46.26 E-value=52 Score=33.13 Aligned_cols=77 Identities=17% Similarity=0.113 Sum_probs=55.2
Q ss_pred HHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEEeCCCC
Q 002975 668 CRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSWIEADNKVHKFHVGETS 747 (861)
Q Consensus 668 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~ 747 (861)
.++.|+.++|...++.++.+.|+++.+..-++.......+.-+|...+.+. +.-.||.|- ..+..++.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A----LtisP~nse--------ALvnR~RT 193 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKA----LTISPGNSE--------ALVNRART 193 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee----eeeCCCchH--------HHhhhhcc
Confidence 578899999999999999999999999998888887777777777766543 334444442 12233455
Q ss_pred CCChHHHHH
Q 002975 748 HPKTLEIYA 756 (861)
Q Consensus 748 ~~~~~~i~~ 756 (861)
-|-.++|-.
T Consensus 194 ~plV~~iD~ 202 (472)
T KOG3824|consen 194 TPLVSAIDR 202 (472)
T ss_pred chHHHHHHH
Confidence 565555544
No 405
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=46.16 E-value=4.5e+02 Score=29.07 Aligned_cols=161 Identities=12% Similarity=0.098 Sum_probs=100.8
Q ss_pred CCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHH
Q 002975 486 GTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMI 562 (861)
Q Consensus 486 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li 562 (861)
..|.....+++..+...-...-.+.+..++...| -+-..+..++..|... ..+.-..+++++.+ .|++.-..|.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 4456666777777777777777777777777655 3455667777777776 45555666665543 3334334444
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHh
Q 002975 563 TGFAKHGFAARALEIFYKMLADGIKPN------GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLL 636 (861)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 636 (861)
.-|-+ ++.+.+..+|.+....= -|. ...|.-+... -..+.|.-.++...+.++.|..--...+.-+-+-|
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrf-I~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRF-IPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 44444 77778888887777652 331 1133333321 13456667777777776666666666666666777
Q ss_pred hhcCCHHHHHHHHHhCC
Q 002975 637 GRSGSLTEALEFIRSMP 653 (861)
Q Consensus 637 ~r~g~~~eA~~~~~~~~ 653 (861)
....+++||++++..+.
T Consensus 216 s~~eN~~eai~Ilk~il 232 (711)
T COG1747 216 SENENWTEAIRILKHIL 232 (711)
T ss_pred ccccCHHHHHHHHHHHh
Confidence 77778888888877653
No 406
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=46.14 E-value=5.4e+02 Score=29.94 Aligned_cols=150 Identities=11% Similarity=0.037 Sum_probs=74.4
Q ss_pred HhcCChHHHHHHHHHHHHcCC-CCC-----hHHHHHHHHH--HHhcCCHHHHHHHHH-------HHHhhcCCCCChhHHH
Q 002975 566 AKHGFAARALEIFYKMLADGI-KPN-----GITYIAVLSA--CSHAGLISEGWKHFR-------SMYDEHGIVQRMEHYA 630 (861)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~g~-~p~-----~~t~~~ll~a--~~~~g~~~~a~~~~~-------~m~~~~~~~p~~~~~~ 630 (861)
+-.|++..|...+++|.+..- .|+ ...+..++.| +-..|+.+.|..+|. ......+...+...+.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 457889899999888876421 111 2233333333 345688999999997 3322334444554444
Q ss_pred HH--HHHhhhcCC--HHH--HHHHHHhCC----CCC--CHHHHHHHH-HHHHHhC--CHHHHHHHHHHHhccC--C-CCC
Q 002975 631 CM--VDLLGRSGS--LTE--ALEFIRSMP----LSA--DVLVWRTFL-GACRVHG--DTELGKHAAEMILEQD--P-QDP 692 (861)
Q Consensus 631 ~l--~~~~~r~g~--~~e--A~~~~~~~~----~~p--~~~~~~~ll-~~~~~~g--~~~~a~~~~~~~~~~~--p-~~~ 692 (861)
.+ +-.+...+. ..+ +.++++.+. ..| +..+|..++ .++..-- ...++...+...++.- . ++.
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 32 223333332 222 666776652 222 344555554 3332211 1235555555544432 1 111
Q ss_pred ----chHHHHHHHHHHcCChhHHHHHHH
Q 002975 693 ----AAHILLSNLYASAGHWEYVANIRK 716 (861)
Q Consensus 693 ----~~~~~L~~~y~~~g~~~~a~~~~~ 716 (861)
-.+..++..+. .|...|..+...
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~ 558 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSA 558 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 12335555555 566666554433
No 407
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.88 E-value=3.4e+02 Score=33.28 Aligned_cols=106 Identities=13% Similarity=0.156 Sum_probs=64.2
Q ss_pred HHHHHHccCCHHHHHHHHHhccC-------------------CC-------------chHHHHHHHHHHhcCChHHHHHH
Q 002975 530 LISMYSRCANVEAAFQVFKEMED-------------------RN-------------VISWTSMITGFAKHGFAARALEI 577 (861)
Q Consensus 530 li~~y~~~g~~~~A~~~~~~~~~-------------------~~-------------~~~~~~li~~~~~~g~~~~A~~~ 577 (861)
+.-+|..+|+..+|...|.+... ++ ..-|-..+..+-+++..+++.++
T Consensus 926 lg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQl 1005 (1480)
T KOG4521|consen 926 LGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQL 1005 (1480)
T ss_pred hheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 33457788999999988887652 00 11244566777778888888887
Q ss_pred HHHHHHcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCh----hHHHHHHHHhhhcCCHH
Q 002975 578 FYKMLADGIKPN----GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRM----EHYACMVDLLGRSGSLT 643 (861)
Q Consensus 578 ~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~l~~~~~r~g~~~ 643 (861)
-...++. +.+| ..+++++.+-....|.+-+|....-+ .||. ....-++-.+..+|.++
T Consensus 1006 A~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~-------npdserrrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1006 AVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR-------NPDSERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc-------CCcHHHHHHHHHHHHHHHHhccchH
Confidence 7777664 3333 23566666666667777766654422 2332 23444566666666654
No 408
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=45.27 E-value=1.4e+02 Score=34.21 Aligned_cols=29 Identities=14% Similarity=0.092 Sum_probs=0.0
Q ss_pred cCChhHHHHHHHHHhhcCCCCCHHHHHHH
Q 002975 467 NLNSEKAFELLHEIEDTGVGTSAYTFASL 495 (861)
Q Consensus 467 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 495 (861)
.|+..+|.+.+-.+......|..+-...+
T Consensus 508 ~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL 536 (566)
T PF07575_consen 508 EGDFREAASLLVSLLKSPIAPKSFWPLLL 536 (566)
T ss_dssp -----------------------------
T ss_pred hhhHHHHHHHHHHHHCCCCCcHHHHHHHH
Confidence 35555555555555555555554443333
No 409
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=45.25 E-value=35 Score=38.87 Aligned_cols=9 Identities=33% Similarity=0.375 Sum_probs=4.4
Q ss_pred HHHHhhcCC
Q 002975 799 VAFGLISTS 807 (861)
Q Consensus 799 ~~~~~~~~~ 807 (861)
+--|+++.|
T Consensus 796 i~~glk~~P 804 (830)
T KOG1923|consen 796 IITGLKSGP 804 (830)
T ss_pred HhhchhcCc
Confidence 344555554
No 410
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=44.98 E-value=47 Score=22.74 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=13.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhc
Q 002975 460 MVDAYAKNLNSEKAFELLHEIEDT 483 (861)
Q Consensus 460 li~~~~~~g~~~~A~~l~~~m~~~ 483 (861)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555666666666666655543
No 411
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=44.49 E-value=3.6e+02 Score=27.46 Aligned_cols=56 Identities=13% Similarity=0.269 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002975 559 TSMITGFAKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSM 616 (861)
Q Consensus 559 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m 616 (861)
+.....|...|.+.+|+++-++.+. +.| +...+-.++..+...|+--.+.+-++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3344566777777777777777766 344 4555666666777777655555555444
No 412
>PHA02875 ankyrin repeat protein; Provisional
Probab=44.41 E-value=4.5e+02 Score=28.59 Aligned_cols=108 Identities=12% Similarity=0.076 Sum_probs=46.2
Q ss_pred HHHHHHhhCCCCCChhhH--HHHHHHhcccCChHHHHHHHHHHHHcCCCCCcc--hhhHHHHHHHHcCCHHHHHHHHHhc
Q 002975 374 KLFSDMIQGQVAPNHFTF--ASVLKACGNLLDSNVAEQVYTHAVKRGRALDDC--VGNSLISMYARSGRMEDARKAFESL 449 (861)
Q Consensus 374 ~l~~~m~~~g~~p~~~t~--~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~ 449 (861)
++++.+.+.|..|+.... .+.+...+..|+.+.++.+ .+.|..++.. ...+.+...+..|+.+-+.-+++.-
T Consensus 116 ~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L----l~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~g 191 (413)
T PHA02875 116 DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL----IDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSG 191 (413)
T ss_pred HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 344444555655543221 1233334455555444333 3444332211 1223344445566666665555544
Q ss_pred CCCCeeh---HHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCH
Q 002975 450 FEKNLVS---YNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSA 489 (861)
Q Consensus 450 ~~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 489 (861)
..++... ..+++..-+..|+.+ +.+.+.+.|..++.
T Consensus 192 a~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 192 ANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred CCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 3333221 123333333445443 33444455655553
No 413
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=43.27 E-value=1.1e+02 Score=28.69 Aligned_cols=43 Identities=12% Similarity=0.270 Sum_probs=30.5
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCC
Q 002975 664 FLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGH 707 (861)
Q Consensus 664 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~ 707 (861)
.+..|.+.|.+++|++++++.++ +|++...-..|..+-.+...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~ 159 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDP 159 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHcccc
Confidence 45679999999999999999999 88775554444444433333
No 414
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=43.11 E-value=77 Score=30.27 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Q 002975 654 LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDP 689 (861)
Q Consensus 654 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 689 (861)
..|++.++..++.++...|+.++|.+..+++..+.|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 567888888888888888888888888888888888
No 415
>PRK09169 hypothetical protein; Validated
Probab=42.72 E-value=1e+03 Score=32.16 Aligned_cols=325 Identities=13% Similarity=0.053 Sum_probs=175.1
Q ss_pred CChhhHHHHHHHhcccCChHHHHHHHHHH----HH---cCCCCCcchhhHHHHHHHHcCCHHHHHHHH----HhcC----
Q 002975 386 PNHFTFASVLKACGNLLDSNVAEQVYTHA----VK---RGRALDDCVGNSLISMYARSGRMEDARKAF----ESLF---- 450 (861)
Q Consensus 386 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~----~~---~g~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~~~---- 450 (861)
-|..-+...++++++-.+-+...+.-..+ .. ..-..+..-....+++++|..+.+.+.... +.+.
T Consensus 286 ~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~~~~ 365 (2316)
T PRK09169 286 LDPQGVANALNALSKWPDTEACRQAAEALAERLAQERGLLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLARDAG 365 (2316)
T ss_pred cCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhChh
Confidence 36666777888888776554433222222 11 111233444455677788877665433222 2221
Q ss_pred ---CCCeehHHHHHHHHHhcCChhH----HHHHHHHHhhc-C--CCCCHHHHHHHHHHhhcccchHHHHHHHHHHHH---
Q 002975 451 ---EKNLVSYNTMVDAYAKNLNSEK----AFELLHEIEDT-G--VGTSAYTFASLLSGASSIGAIGKGEQIHARIIK--- 517 (861)
Q Consensus 451 ---~~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~-g--~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--- 517 (861)
.-+..-....+++++|-.+.+. |..+...+... + -..|..-....+.+|++.+.-+.+.+....+..
T Consensus 366 l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA~rl~ 445 (2316)
T PRK09169 366 LRRALNAQELANALNALSKWPDEEACRAAAEALAARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALAARLA 445 (2316)
T ss_pred hhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 1244556667888888765432 33333333322 1 236777888999999988766644443332211
Q ss_pred h----CCCCchhHHHHHHHHHHccCCHHH----HHHHHHhcc-------CCCchHHHHHHHHHHhcCChHHHHH----HH
Q 002975 518 S----GFESNHCIYNALISMYSRCANVEA----AFQVFKEME-------DRNVISWTSMITGFAKHGFAARALE----IF 578 (861)
Q Consensus 518 ~----~~~~~~~~~~~li~~y~~~g~~~~----A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~----~~ 578 (861)
. .-..+..-....+.+++|..+-+. |..+...+. .-+..-..+.+.++++-++.+.... +.
T Consensus 446 ~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA~aLA 525 (2316)
T PRK09169 446 ADARLRNALSAQELANALNALSKWPDEAACRRAAEALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAAEALA 525 (2316)
T ss_pred hchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 1 012345556677788888876542 333343332 1245566778889998887655422 22
Q ss_pred HHHHHc---CCCCChHHHHHHHHHHHhcCCHHHH----HHHHHHHHhhcC--CCCChhHHHHHHHHhhhcCCHHH----H
Q 002975 579 YKMLAD---GIKPNGITYIAVLSACSHAGLISEG----WKHFRSMYDEHG--IVQRMEHYACMVDLLGRSGSLTE----A 645 (861)
Q Consensus 579 ~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a----~~~~~~m~~~~~--~~p~~~~~~~l~~~~~r~g~~~e----A 645 (861)
.++... --.-|..-+.+.+.++++-...+.. ..+...+..+-+ -..+....+..+.+|++-+.-.. |
T Consensus 526 ~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~acr~Aa 605 (2316)
T PRK09169 526 DRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDEDACRAAA 605 (2316)
T ss_pred HHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhHHHHH
Confidence 222221 1123445677888899987764332 233333322211 12345667778888888775432 3
Q ss_pred HHHHHhCC------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcc---CCC--CCchHHHHHHHHHHcCChhH
Q 002975 646 LEFIRSMP------LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQ---DPQ--DPAAHILLSNLYASAGHWEY 710 (861)
Q Consensus 646 ~~~~~~~~------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~--~~~~~~~L~~~y~~~g~~~~ 710 (861)
..+..... ..-|+.-+.++++++.+-.+.+....++..+-+. +|. ..-.-..|+|+.....+|.+
T Consensus 606 ~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~ 681 (2316)
T PRK09169 606 EALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPD 681 (2316)
T ss_pred HHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCC
Confidence 33333332 2336777888999998888777665555554431 221 11222355555555555555
No 416
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=41.82 E-value=1.9e+02 Score=23.40 Aligned_cols=38 Identities=11% Similarity=0.129 Sum_probs=25.0
Q ss_pred ccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHH
Q 002975 536 RCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARA 574 (861)
Q Consensus 536 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 574 (861)
..|+.+.|.+++..+. +....|..++.++...|+.+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4466777777777776 6666666777777666665544
No 417
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=41.29 E-value=77 Score=32.24 Aligned_cols=39 Identities=28% Similarity=0.373 Sum_probs=25.0
Q ss_pred CcchHHHHH-HHhhcCChhHHHHHHHHHHhCCCCCChhhH
Q 002975 43 SEPLSNRLI-YHLNDGRVQKAIFTLDLMTQKGNHPDLDTY 81 (861)
Q Consensus 43 ~~~~~~~l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 81 (861)
+..+++..+ ..++.|+.+.|+.++++..+.|..--..+|
T Consensus 256 Te~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 256 TESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 344454444 777778888888887777777755444443
No 418
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=40.82 E-value=2.2e+02 Score=24.01 Aligned_cols=54 Identities=13% Similarity=0.066 Sum_probs=31.4
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcC
Q 002975 429 LISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTG 484 (861)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 484 (861)
-+..+.+.|++++|...=.....||...|-+|-. .+.|..+++...+.++..+|
T Consensus 46 r~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 46 RLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-S
T ss_pred HHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3445667788888855445556677777765533 46677777777777666554
No 419
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=40.50 E-value=1.2e+02 Score=25.83 Aligned_cols=28 Identities=18% Similarity=0.393 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002975 556 ISWTSMITGFAKHGFAARALEIFYKMLA 583 (861)
Q Consensus 556 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 583 (861)
.-|..|+.-|...|..++|++++.++.+
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3577888888888999999998888877
No 420
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=40.41 E-value=2.2e+02 Score=24.85 Aligned_cols=51 Identities=20% Similarity=0.135 Sum_probs=37.9
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchH
Q 002975 645 ALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAH 695 (861)
Q Consensus 645 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 695 (861)
++.-+-.+..-|++.+..+-+.+|++.+|+..|.+.+|-+...-+.....|
T Consensus 71 glN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y 121 (149)
T KOG4077|consen 71 GLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVY 121 (149)
T ss_pred HHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHH
Confidence 333334445788999999999999999999999999998876554433333
No 421
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=40.32 E-value=1.3e+02 Score=25.46 Aligned_cols=40 Identities=20% Similarity=0.556 Sum_probs=32.7
Q ss_pred ChHHHHHHHHhcCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHH
Q 002975 128 DLNEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLE 173 (861)
Q Consensus 128 ~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 173 (861)
++++..+.+.+-+. |..|+..|...|.+++|++++.+...
T Consensus 28 ~~~~~e~~L~~~~~------~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 28 DLEEVEEVLKEHGK------YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHHcCC------HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56666666665555 99999999999999999999998876
No 422
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=39.93 E-value=3.3e+02 Score=25.77 Aligned_cols=91 Identities=15% Similarity=0.186 Sum_probs=58.0
Q ss_pred CCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCC---------
Q 002975 450 FEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGF--------- 520 (861)
Q Consensus 450 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~--------- 520 (861)
.++-.+.|.....+-++.-+.+++-+.|-- .+=.+++-.|.+.-++.+++.+++.+.+..+
T Consensus 103 Kdk~~vPFceFAetV~k~~q~~e~dK~~LG----------RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~ 172 (233)
T PF14669_consen 103 KDKPGVPFCEFAETVCKDPQNDEVDKTLLG----------RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLT 172 (233)
T ss_pred cccCCCCHHHHHHHHhcCCccchhhhhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcc
Confidence 334445566666666665555544332211 1223567778888899999999888865422
Q ss_pred -----CCchhHHHHHHHHHHccCCHHHHHHHHHhc
Q 002975 521 -----ESNHCIYNALISMYSRCANVEAAFQVFKEM 550 (861)
Q Consensus 521 -----~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 550 (861)
.+--.+-|.....+.++|.+|.|..++++-
T Consensus 173 g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 173 GPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred CccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 233455677778888888888888888753
No 423
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=39.92 E-value=49 Score=24.69 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=8.8
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 002975 561 MITGFAKHGFAARALEIFYKM 581 (861)
Q Consensus 561 li~~~~~~g~~~~A~~~~~~m 581 (861)
+|.+|.+.|++++|.++.+++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444443
No 424
>PF15161 Neuropep_like: Neuropeptide-like
Probab=39.74 E-value=10 Score=26.77 Aligned_cols=19 Identities=26% Similarity=0.522 Sum_probs=13.7
Q ss_pred EccccccCCcchhhhhhhhh
Q 002975 815 FKNLRVCGDCHTAIKYISMV 834 (861)
Q Consensus 815 ~~nl~~c~~~h~~~~~~s~~ 834 (861)
--.-|-|.|||.+- |+.+.
T Consensus 10 PaesRPCVDCHAFe-fmqRA 28 (65)
T PF15161_consen 10 PAESRPCVDCHAFE-FMQRA 28 (65)
T ss_pred cCCCCCchhhHHHH-HHHHH
Confidence 35678899999765 66543
No 425
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=39.58 E-value=4.2e+02 Score=26.81 Aligned_cols=158 Identities=10% Similarity=0.072 Sum_probs=72.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChH-------HHHHHHHHHHhcCCHHHHHHHHHHHH---hhcCCCCChhHHHHH
Q 002975 563 TGFAKHGFAARALEIFYKMLADGIKPNGI-------TYIAVLSACSHAGLISEGWKHFRSMY---DEHGIVQRMEHYACM 632 (861)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~a~~~~g~~~~a~~~~~~m~---~~~~~~p~~~~~~~l 632 (861)
+-..+.+++++|+..+.+.+..|+..|.. |...+...|...|+...-.+...... ..+.-.........+
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtL 90 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTL 90 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHH
Confidence 33456677888888888888877766533 44556666666666544333222211 122222222333344
Q ss_pred HHHhhh-cCCHHHHHHHHHhC----CCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHh----cc--CCCCCchHHH
Q 002975 633 VDLLGR-SGSLTEALEFIRSM----PLSADV----LVWRTFLGACRVHGDTELGKHAAEMIL----EQ--DPQDPAAHIL 697 (861)
Q Consensus 633 ~~~~~r-~g~~~eA~~~~~~~----~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~--~p~~~~~~~~ 697 (861)
++.+.- ...++.-+++.... ..+... ..-.-++..+.+.|.+..|.....-++ ++ .|.-...|..
T Consensus 91 iekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhll 170 (421)
T COG5159 91 IEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLL 170 (421)
T ss_pred HHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhh
Confidence 443322 22233333322221 000000 111124455556666666655443332 11 2333344555
Q ss_pred HHHHHHHcCChhHHHHHHHHHHh
Q 002975 698 LSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 698 L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
=+.+|-+..+..++..-....+.
T Consensus 171 ESKvyh~irnv~KskaSLTaArt 193 (421)
T COG5159 171 ESKVYHEIRNVSKSKASLTAART 193 (421)
T ss_pred hHHHHHHHHhhhhhhhHHHHHHH
Confidence 55566665555555555555543
No 426
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=39.57 E-value=5e+02 Score=27.68 Aligned_cols=109 Identities=16% Similarity=0.222 Sum_probs=81.4
Q ss_pred HHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHH------------HHHHHHHhCCHHHHHHHHHHHhccCCCCC------
Q 002975 631 CMVDLLGRSGSLTEALEFIRSMPLSADVLVWRT------------FLGACRVHGDTELGKHAAEMILEQDPQDP------ 692 (861)
Q Consensus 631 ~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~------------ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------ 692 (861)
-+...+-.+|++++|.+++.+.+.+ +|++ -+..|...+|+-.|....+++....-+++
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lK 211 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELK 211 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHH
Confidence 4566778899999999999988622 2222 24668888999999988888776432222
Q ss_pred -chHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEEe
Q 002975 693 -AAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSWIEADNKVHKFHV 743 (861)
Q Consensus 693 -~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~ 743 (861)
..|.++..++...+.+=++.+.++..-+-|-.+...--|+++-..+..|..
T Consensus 212 lkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~ 263 (439)
T KOG1498|consen 212 LKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCV 263 (439)
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEe
Confidence 457788888889999999999999888877777766668877666666654
No 427
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=39.01 E-value=73 Score=23.74 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002975 571 AARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYD 618 (861)
Q Consensus 571 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 618 (861)
.++..++++.+.. .+-|-.-...++.++...|++++|.++.+.+.+
T Consensus 6 ~~~~~~~~~~lR~--~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRA--QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444445555544 334555566678888888888888888877763
No 428
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=38.83 E-value=4e+02 Score=26.41 Aligned_cols=157 Identities=15% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHH-HhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhc
Q 002975 561 MITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSAC-SHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRS 639 (861)
Q Consensus 561 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~ 639 (861)
++..+-+.|++++++..++++.+.+...+..--+.+..|| ...|....+++.+..+.....-..+......+-+.-.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki 86 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKKI 86 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHHH
Q ss_pred CC-----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCH-----------------HHHHHHHHHHhc-----cCCCCC
Q 002975 640 GS-----LTEALEFIRSMPLSADVLVWRTFLGACRVHGDT-----------------ELGKHAAEMILE-----QDPQDP 692 (861)
Q Consensus 640 g~-----~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~-----------------~~a~~~~~~~~~-----~~p~~~ 692 (861)
.. -.+.+.+++.. +-|....-.+.+-.+...||+ +.|..+|+++.+ +.|.+|
T Consensus 87 e~EL~~~C~eii~lId~~-Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 87 EDELIDICNEIIRLIDKS-LIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHT-CHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHH-HhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Q ss_pred chHHHHHH----HHHHcCChhHHHHHHHHH
Q 002975 693 AAHILLSN----LYASAGHWEYVANIRKRM 718 (861)
Q Consensus 693 ~~~~~L~~----~y~~~g~~~~a~~~~~~m 718 (861)
.-.-+.-| .|.-.|+.++|.++-+..
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~a 195 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQA 195 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHH
No 429
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=38.69 E-value=5.9e+02 Score=28.25 Aligned_cols=170 Identities=12% Similarity=0.175 Sum_probs=102.2
Q ss_pred cHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHH
Q 002975 354 SWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMY 433 (861)
Q Consensus 354 ~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~ 433 (861)
..-+++..+.++.. +.-...+..+|..-| -+...|..++..|... ..+.-..+++.+++..+. |+.....|+..|
T Consensus 68 ~l~~~~~~f~~n~k-~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y 142 (711)
T COG1747 68 CLVTLLTIFGDNHK-NQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY 142 (711)
T ss_pred HHHHHHHHhccchH-HHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH
Confidence 34456666666665 666666777776643 4566677777777666 455566667766665532 344445566666
Q ss_pred HHcCCHHHHHHHHHhcCCC------Ce---ehHHHHHHHHHhcCChhHHHHHHHHHhh-cCCCCCHHHHHHHHHHhhccc
Q 002975 434 ARSGRMEDARKAFESLFEK------NL---VSYNTMVDAYAKNLNSEKAFELLHEIED-TGVGTSAYTFASLLSGASSIG 503 (861)
Q Consensus 434 ~~~g~~~~A~~~~~~~~~~------~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~~ 503 (861)
-+ ++.+.+..+|..+..+ +. ..|.-++..- ..+.+..+.+..+++. .|...-.+.+.-+-.-|....
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 65 7777777777665221 11 2455554321 3455666666666654 344455566666667778888
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 002975 504 AIGKGEQIHARIIKSGFESNHCIYNALIS 532 (861)
Q Consensus 504 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 532 (861)
++.++.+++..+.+.. ..|...-..++.
T Consensus 220 N~~eai~Ilk~il~~d-~k~~~ar~~~i~ 247 (711)
T COG1747 220 NWTEAIRILKHILEHD-EKDVWARKEIIE 247 (711)
T ss_pred CHHHHHHHHHHHhhhc-chhhhHHHHHHH
Confidence 8888888888777665 344444444444
No 430
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=38.61 E-value=4.7e+02 Score=27.16 Aligned_cols=100 Identities=18% Similarity=0.102 Sum_probs=64.7
Q ss_pred cCCHHHHHHHHHHHHhhcCC---CCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 002975 603 AGLISEGWKHFRSMYDEHGI---VQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKH 679 (861)
Q Consensus 603 ~g~~~~a~~~~~~m~~~~~~---~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 679 (861)
.+..+++.+.|+.......- ..+......+.....+.|..++-..+++.....++...-..++.+..-..+.+.-.+
T Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 143 PECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHH
Confidence 33477888999888743121 345566667777778888877766666666556677888889999888889999999
Q ss_pred HHHHHhccC-CCCCchHHHHHHHH
Q 002975 680 AAEMILEQD-PQDPAAHILLSNLY 702 (861)
Q Consensus 680 ~~~~~~~~~-p~~~~~~~~L~~~y 702 (861)
+++.++.-+ -.....+..+..++
T Consensus 223 ~l~~~l~~~~v~~~d~~~~~~~~~ 246 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQDIRYVLAGLA 246 (324)
T ss_dssp HHHHHHCTSTS-TTTHHHHHHHHH
T ss_pred HHHHHcCCcccccHHHHHHHHHHh
Confidence 999999843 22333455555544
No 431
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=38.61 E-value=94 Score=25.46 Aligned_cols=51 Identities=20% Similarity=0.145 Sum_probs=31.5
Q ss_pred HHhCCHHHHHHHHHHHhccCCCC---------CchHHHHHHHHHHcCChhHHHHHHHHHH
Q 002975 669 RVHGDTELGKHAAEMILEQDPQD---------PAAHILLSNLYASAGHWEYVANIRKRMK 719 (861)
Q Consensus 669 ~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~L~~~y~~~g~~~~a~~~~~~m~ 719 (861)
...||+..|...+.+.+...... ..+...++.++...|++++|.+.+++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34556666666555555432211 1234467888888999999988877553
No 432
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.03 E-value=32 Score=30.11 Aligned_cols=34 Identities=29% Similarity=0.457 Sum_probs=25.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 002975 565 FAKHGFAARALEIFYKMLADGIKPNGITYIAVLSAC 600 (861)
Q Consensus 565 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 600 (861)
....|.-..|-.+|++|++.|-+|| .|..|+.++
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 3445667789999999999999888 456666554
No 433
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=37.68 E-value=77 Score=22.16 Aligned_cols=36 Identities=14% Similarity=0.196 Sum_probs=28.9
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 002975 154 SYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRA 189 (861)
Q Consensus 154 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 189 (861)
-..+.|-..++..++++|.+.|+..+...|..+++.
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 345678888899999999999988888888777754
No 434
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.47 E-value=5.5e+02 Score=27.56 Aligned_cols=91 Identities=12% Similarity=0.052 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHhccC------CCchHHHHHHHHHHhcCChHHHHHHHHHHHHc---------CCCCC
Q 002975 525 CIYNALISMYSRCANVEAAFQVFKEMED------RNVISWTSMITGFAKHGFAARALEIFYKMLAD---------GIKPN 589 (861)
Q Consensus 525 ~~~~~li~~y~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------g~~p~ 589 (861)
..+.-+.+-|..||+++.|.+.|.+..+ .-+..|-.+|..-...|+|.....+-.+..+. -+.+-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 4466788889999999999999988653 12345666666666778887777776666553 12233
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002975 590 GITYIAVLSACSHAGLISEGWKHFRSMY 617 (861)
Q Consensus 590 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 617 (861)
...+..+..-+. ++++.|.+.|-...
T Consensus 231 l~C~agLa~L~l--kkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 231 LKCAAGLANLLL--KKYKSAAKYFLLAE 256 (466)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHhCC
Confidence 334444444333 36777777665443
No 435
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=37.32 E-value=1.2e+03 Score=31.53 Aligned_cols=108 Identities=15% Similarity=0.126 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CC----------C-
Q 002975 590 GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LS----------A- 656 (861)
Q Consensus 590 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~----------p- 656 (861)
..+|......+..+|.++.|....-... +.. .| ..+--....+...|+-..|+.++++.- .. |
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~-e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAK-ESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhh-hcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence 3477888888888888888887665554 222 33 334445667788888888888876541 11 1
Q ss_pred --CHHHHH-HHH--HHH-HHhC--CHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 002975 657 --DVLVWR-TFL--GAC-RVHG--DTELGKHAAEMILEQDPQDPAAHILLSNL 701 (861)
Q Consensus 657 --~~~~~~-~ll--~~~-~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 701 (861)
+..+.. +++ .-+ ...| ..+.-++.|.++.++.|.....|+.|+.-
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~y 1798 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKY 1798 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHH
Confidence 112222 111 112 1223 34556778889999999888888877743
No 436
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=36.88 E-value=1.7e+02 Score=23.66 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=26.4
Q ss_pred HcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHH
Q 002975 435 RSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKA 473 (861)
Q Consensus 435 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 473 (861)
..|+.+.|.++++.++ +..-.|..+++++-..|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4567777777777777 6777777777777776665544
No 437
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=36.63 E-value=3.1e+02 Score=24.40 Aligned_cols=32 Identities=13% Similarity=0.113 Sum_probs=26.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhccCCCCCch
Q 002975 663 TFLGACRVHGDTELGKHAAEMILEQDPQDPAA 694 (861)
Q Consensus 663 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 694 (861)
-|.-+|.+.|+++.+.+..+.+++.+|+|..+
T Consensus 76 YLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 76 YLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 35557889999999999999999999987444
No 438
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=36.55 E-value=1.1e+02 Score=29.14 Aligned_cols=32 Identities=16% Similarity=0.081 Sum_probs=20.4
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002975 586 IKPNGITYIAVLSACSHAGLISEGWKHFRSMY 617 (861)
Q Consensus 586 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 617 (861)
..|+...|..++.++...|+.++|.+..+++.
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666666666666666666666666666655
No 439
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=35.98 E-value=3.3e+02 Score=24.56 Aligned_cols=51 Identities=12% Similarity=0.182 Sum_probs=32.5
Q ss_pred CCchHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 002975 553 RNVISWTSMITGFAKHGF-AARALEIFYKMLADGIKPNGITYIAVLSACSHA 603 (861)
Q Consensus 553 ~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 603 (861)
.+-.+|++++.+..+..- ---+..+|+-|.+.+.+++..-|..++.+|.+.
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 345567777777655444 234566677777666677777777777776654
No 440
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=35.91 E-value=4.2e+02 Score=25.74 Aligned_cols=27 Identities=19% Similarity=0.097 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002975 591 ITYIAVLSACSHAGLISEGWKHFRSMY 617 (861)
Q Consensus 591 ~t~~~ll~a~~~~g~~~~a~~~~~~m~ 617 (861)
.||.-+..-+...|++++|..+|+..+
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 467777777788888888888887665
No 441
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=34.93 E-value=51 Score=28.90 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=24.7
Q ss_pred hcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 002975 260 QLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSAC 293 (861)
Q Consensus 260 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 293 (861)
..|.-.+|-.+|+.|++.|-.||. ++.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 456677899999999999999884 56666554
No 442
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=34.45 E-value=97 Score=28.41 Aligned_cols=16 Identities=19% Similarity=0.407 Sum_probs=7.0
Q ss_pred hcCCcchhHHHHHHHH
Q 002975 90 RSRNFHLGKLVHSLLT 105 (861)
Q Consensus 90 ~~~~~~~a~~~~~~~~ 105 (861)
..++++.|..+|..+.
T Consensus 102 ~~~d~~~A~~Ih~~L~ 117 (157)
T PF07304_consen 102 QARDYDAADEIHVDLM 117 (157)
T ss_dssp HHT-HHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 3444555555544443
No 443
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=34.16 E-value=1.1e+02 Score=21.45 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=22.5
Q ss_pred HHhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 002975 52 YHLNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLLK 86 (861)
Q Consensus 52 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 86 (861)
...+.|-..++...+++|.+.|+..+...|..+++
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 44556666666666777766676666666666554
No 444
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=33.86 E-value=17 Score=27.15 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=16.6
Q ss_pred ceEEeecCCccccccCCccCC
Q 002975 837 REIVLRDSNRFHHIKDGKCSC 857 (861)
Q Consensus 837 ~~~~~~~~~~~h~~~~g~~~c 857 (861)
..|-+.|....|+|+||+-+-
T Consensus 8 ksi~LkDGstvyiFKDGKMam 28 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAM 28 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEE
T ss_pred eeEecCCCCEEEEEcCCceeh
Confidence 357789999999999998653
No 445
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=33.83 E-value=22 Score=27.98 Aligned_cols=64 Identities=19% Similarity=0.193 Sum_probs=35.7
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 641 SLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 641 ~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
.++.|.+.+++.. . +=..|+.+.|...|++.+..--.-..+-+- .......|++|.++..+|+.
T Consensus 4 ~~~~A~~~I~kaL-~------------~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~---~~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 4 YYKQAFEEISKAL-R------------ADEWGDKEQALAHYRKGLRELEEGIAVPVP---SAGVGSQWERARRLQQKMKT 67 (79)
T ss_pred HHHHHHHHHHHHh-h------------hhhcCCHHHHHHHHHHHHHHHHHHcCCCCC---cccccHHHHHHHHHHHHHHH
Confidence 4566777766652 1 112366777777777666421000000000 24455679999999999975
No 446
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=33.77 E-value=3e+02 Score=27.71 Aligned_cols=57 Identities=23% Similarity=0.200 Sum_probs=48.2
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 664 FLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 664 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+=.++...++.+.|.++.++++.++|+++.-..--+-+|+..|-..-|.+-.+..-+
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 335577888999999999999999999998888889999999999988887776433
No 447
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=33.31 E-value=76 Score=32.28 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHH
Q 002975 557 SWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVL 597 (861)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 597 (861)
-||..|....+.||+++|+.+++|..+.|..--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 45788888888999999999999999888765556665443
No 448
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=32.86 E-value=41 Score=40.05 Aligned_cols=10 Identities=30% Similarity=0.773 Sum_probs=4.0
Q ss_pred cHHHHHHHHH
Q 002975 354 SWTAIITGYV 363 (861)
Q Consensus 354 ~~~~li~~~~ 363 (861)
+|..|+..|+
T Consensus 476 syqkLLknyv 485 (2365)
T COG5178 476 SYQKLLKNYV 485 (2365)
T ss_pred hHHHHHHHHH
Confidence 3444444433
No 449
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=32.81 E-value=67 Score=34.71 Aligned_cols=123 Identities=16% Similarity=0.249 Sum_probs=67.7
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCC-------------CchHHHHHHHHH----
Q 002975 503 GAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDR-------------NVISWTSMITGF---- 565 (861)
Q Consensus 503 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-------------~~~~~~~li~~~---- 565 (861)
+.+++-.++++.+.+.| .+| +...-|+.|.+.+++++|..-+++-.+. .+.....++...
T Consensus 68 ~~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~Pv 144 (480)
T TIGR01503 68 ALLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPL 144 (480)
T ss_pred CcHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCe
Confidence 34555666666666654 222 3445577788888888887777755421 111222233322
Q ss_pred -HhcCChHHHHHHHHHHHHcCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHH------hhcCCCCChhHHHHH
Q 002975 566 -AKHGFAARALEIFYKMLADGIKPN---GITYIAVLSACSHAGLISEGWKHFRSMY------DEHGIVQRMEHYACM 632 (861)
Q Consensus 566 -~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~------~~~~~~p~~~~~~~l 632 (861)
.+||. ..|..+++-+...|+.-. .++|+. -|++.=-+++++..|+.+- ++.|+..+.+.+.+|
T Consensus 145 QvRHGt-pDarlL~e~~~a~G~~a~EGG~ISYnl---PYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpL 217 (480)
T TIGR01503 145 QIRHGT-PDARLLAEIILAGGFTSFEGGGISYNI---PYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPL 217 (480)
T ss_pred eccCCC-CcHHHHHHHHHHcCCCccCCCcceecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCC
Confidence 24553 456777888888776554 345542 3555556677766665432 123555555555443
No 450
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=32.28 E-value=76 Score=34.31 Aligned_cols=132 Identities=17% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhc-----
Q 002975 565 FAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRS----- 639 (861)
Q Consensus 565 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~----- 639 (861)
+...|++.+|+..|+.++. ...+.........+++.++..... +| .....+.+-.|.
T Consensus 214 ~~t~gKF~eA~~~Fr~iL~----------~i~l~vv~~~~E~~e~~eli~icr-EY-------ilgl~iEl~Rr~l~~~~ 275 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSILH----------SIPLLVVESREEEDEAKELIEICR-EY-------ILGLSIELERRELPKDP 275 (422)
T ss_dssp HHHTT-HHHHHHHHHHHHH----------HHHC--BSSCHHHHHHHHHHHHHH-HH-------HHHHHHHHHHCTS-TTT
T ss_pred HHhcCCHHHHHHHHHHHHH----------HhheeeecCHHHHHHHHHHHHHHH-HH-------HHHHHHHHHHHhccccc
Q ss_pred ----CCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHH
Q 002975 640 ----GSLTEALEFIRSMPLSAD--VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVAN 713 (861)
Q Consensus 640 ----g~~~eA~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~ 713 (861)
.+--|--.+|....+.|. ..++++-++.+.+++|+.-|-.++++++++.|....+-..---+-....+..++.+
T Consensus 276 ~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~qArKil~~~e~~~tDa~~ 355 (422)
T PF06957_consen 276 VEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQARKILQACERNPTDAHE 355 (422)
T ss_dssp HHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHHHHHHHHHHCCS--BSS-
T ss_pred hhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCcee
Q ss_pred H
Q 002975 714 I 714 (861)
Q Consensus 714 ~ 714 (861)
+
T Consensus 356 i 356 (422)
T PF06957_consen 356 I 356 (422)
T ss_dssp -
T ss_pred c
No 451
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=31.56 E-value=4.6e+02 Score=24.94 Aligned_cols=51 Identities=14% Similarity=0.221 Sum_probs=29.7
Q ss_pred HHccCCHHHHHHHHHhccC------CCchHHHHHHH-HHHhcCC--hHHHHHHHHHHHHc
Q 002975 534 YSRCANVEAAFQVFKEMED------RNVISWTSMIT-GFAKHGF--AARALEIFYKMLAD 584 (861)
Q Consensus 534 y~~~g~~~~A~~~~~~~~~------~~~~~~~~li~-~~~~~g~--~~~A~~~~~~m~~~ 584 (861)
....|++++|..-++.+.+ .-...|..+.. +++.++. +-+|..++.-....
T Consensus 39 ~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 39 LLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 4456777777777776652 23445655554 6776665 44666666555443
No 452
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=30.68 E-value=22 Score=19.43 Aligned_cols=12 Identities=33% Similarity=0.376 Sum_probs=7.9
Q ss_pred CCcchhhhhhhh
Q 002975 822 GDCHTAIKYISM 833 (861)
Q Consensus 822 ~~~h~~~~~~s~ 833 (861)
...|+++|+||.
T Consensus 10 qglhe~ikli~n 21 (23)
T PF08225_consen 10 QGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHhc
Confidence 345777777763
No 453
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=30.52 E-value=1.1e+02 Score=32.62 Aligned_cols=48 Identities=8% Similarity=0.113 Sum_probs=30.3
Q ss_pred HHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHH
Q 002975 666 GACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVAN 713 (861)
Q Consensus 666 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~ 713 (861)
..|...++.+.|.....+.+-++|..+..+.-=+.++....||.+|.+
T Consensus 236 ~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAar 283 (569)
T PF15015_consen 236 TCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAAR 283 (569)
T ss_pred HhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677666666666777666666655666666666666644
No 454
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=29.84 E-value=3.1e+02 Score=22.39 Aligned_cols=20 Identities=10% Similarity=0.091 Sum_probs=10.5
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 002975 598 SACSHAGLISEGWKHFRSMY 617 (861)
Q Consensus 598 ~a~~~~g~~~~a~~~~~~m~ 617 (861)
......|..++|...+++.+
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 33445555666555555544
No 455
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=29.58 E-value=6.6e+02 Score=26.07 Aligned_cols=86 Identities=6% Similarity=0.028 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHhCC----CCchhHHHHHHHHHHccCCHHHHHHHHHhccC-CCchHHHHHHHHHHhcCChHHHHHHHH
Q 002975 505 IGKGEQIHARIIKSGF----ESNHCIYNALISMYSRCANVEAAFQVFKEMED-RNVISWTSMITGFAKHGFAARALEIFY 579 (861)
Q Consensus 505 ~~~a~~~~~~~~~~~~----~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~ 579 (861)
.+.+.+.+......+. ..++.....++....+.|..+.-..+++.... ++......++.+++-..+.+....+++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 4556666666555311 33455555666666677776655555555443 345556677777777777777677777
Q ss_pred HHHHcC-CCCCh
Q 002975 580 KMLADG-IKPNG 590 (861)
Q Consensus 580 ~m~~~g-~~p~~ 590 (861)
.....+ +++..
T Consensus 226 ~~l~~~~v~~~d 237 (324)
T PF11838_consen 226 LLLSNDKVRSQD 237 (324)
T ss_dssp HHHCTSTS-TTT
T ss_pred HHcCCcccccHH
Confidence 766643 44443
No 456
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=28.85 E-value=3.8e+02 Score=28.26 Aligned_cols=83 Identities=19% Similarity=0.217 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEEeCCCCCC--ChH
Q 002975 675 ELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSWIEADNKVHKFHVGETSHP--KTL 752 (861)
Q Consensus 675 ~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~--~~~ 752 (861)
|..++++-++--.+|+|+.....+ +|.+++++++++|-. ..-..++|+.... ...
T Consensus 28 e~vl~AA~~l~laDPeDSD~N~if-----------~avkiydeL~~~Ged------------veVA~VsG~~~~~v~ad~ 84 (344)
T PF04123_consen 28 EAVLDAAVKLALADPEDSDVNAIF-----------GAVKIYDELKAEGED------------VEVAVVSGSPDVGVEADR 84 (344)
T ss_pred HHHHHHHHHHhcCCcccccHHHHH-----------HHHHHHHHHHhcCCC------------eEEEEEECCCCCchhhHH
Confidence 455666677777899999988877 789999999987652 2245678875542 245
Q ss_pred HHHHHHHHHHHHHHhcCcccCCCccccccchhh
Q 002975 753 EIYAELDQLALKIKEFGYLPDTNFVLHELEEEQ 785 (861)
Q Consensus 753 ~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~ 785 (861)
+|.++++++.+ .+.|+...+..|=.|+|
T Consensus 85 ~I~~qld~vl~-----~~~~~~~i~VsDGaeDE 112 (344)
T PF04123_consen 85 KIAEQLDEVLS-----KFDPDSAIVVSDGAEDE 112 (344)
T ss_pred HHHHHHHHHHH-----hCCCCEEEEEecChhhh
Confidence 56666666543 35566555555544443
No 457
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=28.31 E-value=5e+02 Score=25.29 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=5.9
Q ss_pred hhcCCHHHHHHHHHh
Q 002975 637 GRSGSLTEALEFIRS 651 (861)
Q Consensus 637 ~r~g~~~eA~~~~~~ 651 (861)
.|-|+.++|.+.|.+
T Consensus 176 rrlg~~~eA~~~fs~ 190 (214)
T PF09986_consen 176 RRLGNYDEAKRWFSR 190 (214)
T ss_pred HHhCCHHHHHHHHHH
Confidence 333444444433333
No 458
>PF13934 ELYS: Nuclear pore complex assembly
Probab=27.96 E-value=5.9e+02 Score=25.03 Aligned_cols=112 Identities=18% Similarity=0.272 Sum_probs=57.2
Q ss_pred ccCCHHHHHHHHHhccCCCchHH--HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 002975 536 RCANVEAAFQVFKEMEDRNVISW--TSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHF 613 (861)
Q Consensus 536 ~~g~~~~A~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 613 (861)
..+++++|.+.+-. |....| .-++.++...|+.+.|+.+++.+.-..-. ......++.+ ...+.+.||..+-
T Consensus 90 D~~~~~~A~~~L~~---ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s--~~~~~~~~~~-La~~~v~EAf~~~ 163 (226)
T PF13934_consen 90 DHGDFEEALELLSH---PSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSS--PEALTLYFVA-LANGLVTEAFSFQ 163 (226)
T ss_pred ChHhHHHHHHHhCC---CCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCC--HHHHHHHHHH-HHcCCHHHHHHHH
Confidence 34566677666633 322211 23677777788888888887664332111 2222223333 4457888888776
Q ss_pred HHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC
Q 002975 614 RSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSAD 657 (861)
Q Consensus 614 ~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~ 657 (861)
+...+. -....+..++..+.....-....+.+-.+|..+.
T Consensus 164 R~~~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~ 203 (226)
T PF13934_consen 164 RSYPDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEE 203 (226)
T ss_pred HhCchh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChH
Confidence 655421 1134555566555433322333344444555544
No 459
>PRK11619 lytic murein transglycosylase; Provisional
Probab=27.89 E-value=1e+03 Score=27.83 Aligned_cols=238 Identities=10% Similarity=-0.039 Sum_probs=115.4
Q ss_pred CChhHHHHHHHHHhhcC-CCCCHH--HHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHH
Q 002975 468 LNSEKAFELLHEIEDTG-VGTSAY--TFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAF 544 (861)
Q Consensus 468 g~~~~A~~l~~~m~~~g-~~p~~~--t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 544 (861)
.+.+.|..++....... ..+... ....+....+..+...++.+.+....... .+..+...-+..-.+.++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence 34566777776654332 222221 12222222222211334444444332221 23333444444555677777777
Q ss_pred HHHHhccC--CCchHH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 002975 545 QVFKEMED--RNVISW-TSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHG 621 (861)
Q Consensus 545 ~~~~~~~~--~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 621 (861)
..+..|.. .+...| -=+..++...|+.++|..+|+++.. . .+|..++.+- +.|..-. + ...
T Consensus 333 ~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~---~~fYG~LAa~-~Lg~~~~----~-----~~~ 396 (644)
T PRK11619 333 TWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---Q---RGFYPMVAAQ-RLGEEYP----L-----KID 396 (644)
T ss_pred HHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---C---CCcHHHHHHH-HcCCCCC----C-----CCC
Confidence 77777753 121112 1244555556777777777777633 1 2344443321 2221100 0 000
Q ss_pred CCCCh------hHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccC---CCCC
Q 002975 622 IVQRM------EHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQD---PQDP 692 (861)
Q Consensus 622 ~~p~~------~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~ 692 (861)
..|.. .--..-+..+...|+..+|...+..+....+......+.......|..+.++.+..+....+ -.-+
T Consensus 397 ~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp 476 (644)
T PRK11619 397 KAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFP 476 (644)
T ss_pred CCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCC
Confidence 00000 00112245667789999999888776444555666667777788899999988776543311 1123
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHH-hCCCc
Q 002975 693 AAHILLSNLYASAGHWEYVANIRKRMK-ERNLI 724 (861)
Q Consensus 693 ~~~~~L~~~y~~~g~~~~a~~~~~~m~-~~~~~ 724 (861)
..|.....-++..-..+.+. ++-.++ |.+..
T Consensus 477 ~~~~~~~~~~a~~~~v~~~l-v~ai~rqES~f~ 508 (644)
T PRK11619 477 LAWNDEFRRYTSGKGIPQSY-AMAIARQESAWN 508 (644)
T ss_pred cchHHHHHHHHHHcCCCHHH-HHHHHHHhcCCC
Confidence 34555555555555555543 333343 44443
No 460
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=27.60 E-value=2.1e+02 Score=24.16 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=11.1
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 002975 460 MVDAYAKNLNSEKAFELLHEI 480 (861)
Q Consensus 460 li~~~~~~g~~~~A~~l~~~m 480 (861)
++..|...++.++|...++++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 444555555666666555554
No 461
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=27.45 E-value=3.8e+02 Score=23.44 Aligned_cols=50 Identities=16% Similarity=0.063 Sum_probs=20.8
Q ss_pred HHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHH-HHHHHHHHhCCHHHHHHH
Q 002975 631 CMVDLLGRSGSLTEALEFIRSMPLSADVLVWR-TFLGACRVHGDTELGKHA 680 (861)
Q Consensus 631 ~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~-~ll~~~~~~g~~~~a~~~ 680 (861)
++..++.=.|..++|.+++....=-+.-...| .++..|+...+.++-..+
T Consensus 71 AlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~ 121 (127)
T PF04034_consen 71 ALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEI 121 (127)
T ss_pred HHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 34444444455555555544443222222222 244555554444443333
No 462
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=27.26 E-value=3.3e+02 Score=21.93 Aligned_cols=42 Identities=14% Similarity=0.265 Sum_probs=31.2
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhcc
Q 002975 510 QIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEME 551 (861)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 551 (861)
++|+.....|+..|+.+|..+++...-+=..+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 677777777888888888888877766666666677776664
No 463
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=27.17 E-value=3.2e+02 Score=26.16 Aligned_cols=92 Identities=13% Similarity=0.124 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHH-HHHHHHcCChhHHHHHHHHHHhCCCccCCceeEEEeCCe
Q 002975 659 LVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILL-SNLYASAGHWEYVANIRKRMKERNLIKEAGCSWIEADNK 737 (861)
Q Consensus 659 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L-~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~ 737 (861)
.....++..|...||.+.|.+++--++...+-|....-.+ +.++...+.-....+.++.|...=.....-...+...+.
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~~~ 121 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRRII 121 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhhcc
Confidence 4556777778888888888888888887666555443333 345666655555546555553311111111111222334
Q ss_pred EEEEEeCCCCCCC
Q 002975 738 VHKFHVGETSHPK 750 (861)
Q Consensus 738 ~~~f~~~~~~~~~ 750 (861)
.+.|.+|.+.|--
T Consensus 122 ~pvfrsGs~t~tp 134 (199)
T PF04090_consen 122 APVFRSGSRTHTP 134 (199)
T ss_pred cccccCCCcccch
Confidence 5889999988843
No 464
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=26.62 E-value=1.2e+02 Score=29.43 Aligned_cols=55 Identities=22% Similarity=0.231 Sum_probs=49.5
Q ss_pred HHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 002975 669 RVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNL 723 (861)
Q Consensus 669 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~ 723 (861)
...+|.+-+-.++.+++++-|+....+..++..-.+.|+.+.|.+.+++..+...
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 4568899999999999999999999999999999999999999999988766443
No 465
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.15 E-value=8.5e+02 Score=26.24 Aligned_cols=131 Identities=12% Similarity=0.140 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------cCCCCCh
Q 002975 557 SWTSMITGFAKHGFAARALEIFYKMLADGIKP--NGITYIAVLSACSHAGLISEGWKHFRSMYDE--------HGIVQRM 626 (861)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~--------~~~~p~~ 626 (861)
.+.-+..-|...|+.+.|++.|.+.+.--..- -...|..++..-.-.|+|.....+-.+.... ..+.+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 44556778899999999999999866531111 1224555666555667776666555554421 2345566
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhCC---------CCC-CHHHHHHHHHHHH--HhCCHH---HHHHHHHHHhccCCC
Q 002975 627 EHYACMVDLLGRSGSLTEALEFIRSMP---------LSA-DVLVWRTFLGACR--VHGDTE---LGKHAAEMILEQDPQ 690 (861)
Q Consensus 627 ~~~~~l~~~~~r~g~~~eA~~~~~~~~---------~~p-~~~~~~~ll~~~~--~~g~~~---~a~~~~~~~~~~~p~ 690 (861)
..+..+..+..+ +++.|.+.|-..+ ..| |..+|..| .+.. .+.++. ..-..|+..++++|+
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggL-cALAtfdr~~Lk~~vi~n~~Fk~flel~Pq 307 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGL-CALATFDRQDLKLNVIKNESFKLFLELEPQ 307 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhh-HhhccCCHHHHHHHHHcchhhhhHHhcChH
Confidence 677777777666 7777776665442 223 44555443 3332 222333 223467788888885
No 466
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=26.11 E-value=2.9e+02 Score=22.13 Aligned_cols=61 Identities=11% Similarity=0.229 Sum_probs=37.6
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHH
Q 002975 510 QIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARA 574 (861)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 574 (861)
.++..+.+.|+- +....-...+...+.+.|.++++.++.++..+|..+..++...|+..-|
T Consensus 20 ~v~~~L~~~~Vl----t~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 20 YLWDHLLSRGVF----TPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHhcCCC----CHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 355555555532 2222223334556677788888888888888888888777777765444
No 467
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=26.09 E-value=25 Score=25.30 Aligned_cols=13 Identities=31% Similarity=0.823 Sum_probs=9.5
Q ss_pred cccccCCcchhhh
Q 002975 817 NLRVCGDCHTAIK 829 (861)
Q Consensus 817 nl~~c~~~h~~~~ 829 (861)
-.-+|+|||.--.
T Consensus 19 miYiCgdC~~en~ 31 (62)
T KOG3507|consen 19 MIYICGDCGQENT 31 (62)
T ss_pred EEEEecccccccc
Confidence 4578999997433
No 468
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=25.22 E-value=4.6e+02 Score=22.89 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 002975 573 RALEIFYKMLADGIKPNG-ITYIAVLSACSHAGLISEGWKHFRS 615 (861)
Q Consensus 573 ~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~ 615 (861)
++.++|+.|...|+--.. .-|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 777888888887766653 3566666667777788888777754
No 469
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=25.19 E-value=2.7e+02 Score=22.30 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=28.5
Q ss_pred HHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHH
Q 002975 434 ARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKA 473 (861)
Q Consensus 434 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 473 (861)
+...+.+.|.++++.++.++..+|.++.+++-..|...-|
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3445677778888888888888888888777776655443
No 470
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=25.18 E-value=6e+02 Score=28.68 Aligned_cols=126 Identities=13% Similarity=0.049 Sum_probs=71.8
Q ss_pred HHHHHHHHhcCCCCeehHHHHH--HHHH-hcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 002975 440 EDARKAFESLFEKNLVSYNTMV--DAYA-KNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARII 516 (861)
Q Consensus 440 ~~A~~~~~~~~~~~~~~~~~li--~~~~-~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 516 (861)
+-+-.+|..|..++...|-+|- ..|. -.|+...|...+.........-..+....|.....+.|-...|..++.+..
T Consensus 590 e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l 669 (886)
T KOG4507|consen 590 EIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQAL 669 (886)
T ss_pred HHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 3445555666655554444331 1122 256666676666655533222222344444455555555556666666555
Q ss_pred HhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHH
Q 002975 517 KSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFA 566 (861)
Q Consensus 517 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 566 (861)
... ...+-++-.+.++|....+++.|++.|++..+ ++.+.-+.|...-|
T Consensus 670 ~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 670 AIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 544 45566777788888888888888888887664 34556666654433
No 471
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.15 E-value=7.1e+02 Score=24.98 Aligned_cols=186 Identities=10% Similarity=0.108 Sum_probs=117.2
Q ss_pred cCChhHHHHHHHHHhhcCCCCCH---HHHHHHHHHhhcccchHHHHHHHHHHH---HhCC--CCchhHHHHHHHHHHccC
Q 002975 467 NLNSEKAFELLHEIEDTGVGTSA---YTFASLLSGASSIGAIGKGEQIHARII---KSGF--ESNHCIYNALISMYSRCA 538 (861)
Q Consensus 467 ~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~a~~~~~~~~~a~~~~~~~~---~~~~--~~~~~~~~~li~~y~~~g 538 (861)
..++++|+.-|++..+..-.-.. ..+..++....+.+++++....+.++. ++.+ .-+....|++++.-+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 45788999999988764323233 345556778889999998888777664 2221 234567788888887777
Q ss_pred CHHHHHHHHHhccC-----CCchHH----HHHHHHHHhcCChHHHHHHHHHHHHcCCCC----C-------hHHHHHHHH
Q 002975 539 NVEAAFQVFKEMED-----RNVISW----TSMITGFAKHGFAARALEIFYKMLADGIKP----N-------GITYIAVLS 598 (861)
Q Consensus 539 ~~~~A~~~~~~~~~-----~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~-------~~t~~~ll~ 598 (861)
+.+--...|+...+ +|...| +-|...|...|.+.+-.++++++.++--.- | ...|..=+.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 77777776665431 344333 457778888888888888888887642111 1 124555566
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHH----HHHHhhhcCCHHHHH-HHHHhC
Q 002975 599 ACSHAGLISEGWKHFRSMYDEHGIVQRMEHYAC----MVDLLGRSGSLTEAL-EFIRSM 652 (861)
Q Consensus 599 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~----l~~~~~r~g~~~eA~-~~~~~~ 652 (861)
.|....+-..-..+++...--...-|.+..... =..+..|.|++++|. ++|+..
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 666666666666666665533334454443332 234667889998886 444443
No 472
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=25.05 E-value=1.4e+03 Score=28.24 Aligned_cols=253 Identities=8% Similarity=-0.009 Sum_probs=130.9
Q ss_pred HHHhccCCCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCC
Q 002975 342 KVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRAL 421 (861)
Q Consensus 342 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 421 (861)
.+...+.++|...-..-+..+.+.+. +++...+..+.. .+|...-...+.++...+........+..+++. +
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~--~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~ 696 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP--PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---P 696 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc--hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---C
Confidence 33344445555555555555555553 344444444442 233333334444443332111111222222222 4
Q ss_pred CcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhc
Q 002975 422 DDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASS 501 (861)
Q Consensus 422 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 501 (861)
|..+-...++.+...+.- ....+...+..+|...-...+.++.+.+..+. +.... -.++...-.....++..
T Consensus 697 d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 697 DPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLAT 768 (897)
T ss_pred CHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHH
Confidence 555555566666544321 12234455556666555555666665544322 11222 23455555556666666
Q ss_pred ccchHH-HHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHH-HHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHH
Q 002975 502 IGAIGK-GEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAF-QVFKEMEDRNVISWTSMITGFAKHGFAARALEIFY 579 (861)
Q Consensus 502 ~~~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 579 (861)
.+..+. +...+..+.+ .+|..+-.+.+..+.+.|..+.+. .+...+.++|...-...+.++...+. +++...+-
T Consensus 769 ~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 769 LGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred hccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 654432 2333333333 456778888888888888765553 34444556666666667777777764 56667777
Q ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002975 580 KMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMY 617 (861)
Q Consensus 580 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 617 (861)
.+++ .|+...-...+.++.....-..+...+....
T Consensus 845 ~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 845 EALT---DPHLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 7665 5666555566666666533345666666555
No 473
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=25.00 E-value=2.9e+02 Score=27.20 Aligned_cols=106 Identities=15% Similarity=0.055 Sum_probs=53.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCC-CChH--HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCC
Q 002975 565 FAKHGFAARALEIFYKMLADGIK-PNGI--TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGS 641 (861)
Q Consensus 565 ~~~~g~~~~A~~~~~~m~~~g~~-p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~ 641 (861)
....|+++.|+++.+-+++.|.. |+.+ ++-+++. |+....-.... ..|-..++.....+.++-...
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~va--------eev~~~A~~~~-~ag~~~e~~~~~~~~~l~~~~-- 161 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVA--------EEVANAALKAA-SAGESVEPYFLRVFLDLTTEW-- 161 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHH--------HHHHHHHHHHH-HcCCCCChHHHHHHHHHHhcC--
Confidence 45789999999999999998854 4422 2222221 11111111111 223333333222221111111
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHH---------HhCCHHHHHHHHHHHhccCCC
Q 002975 642 LTEALEFIRSMPLSADVLVWRTFLGACR---------VHGDTELGKHAAEMILEQDPQ 690 (861)
Q Consensus 642 ~~eA~~~~~~~~~~p~~~~~~~ll~~~~---------~~g~~~~a~~~~~~~~~~~p~ 690 (861)
.|+.+...-.+..++..+. ..++...|...++++++++|+
T Consensus 162 ---------dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 162 ---------DMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred ---------CCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 2222222334455555552 345778899999999999985
No 474
>PF05119 Terminase_4: Phage terminase, small subunit; InterPro: IPR006448 This entry is represented by Streptococcus phage 7201, Orf21. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group of sequences describe the distinct family of phage (and integrated prophage) putative terminase small subunit sequnces. Members tend to be encoded by the gene adjacent to the phage terminase large subunit gene.
Probab=24.86 E-value=1.7e+02 Score=24.13 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=28.6
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhcCcccCCCccccc
Q 002975 745 ETSHPKTLEIYAELDQLALKIKEFGYLPDTNFVLHE 780 (861)
Q Consensus 745 ~~~~~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~ 780 (861)
...||....+.....++..-..+.|..|....-+..
T Consensus 57 ~~~nP~~~~~~~~~~~~~~l~~~lGLtP~sR~kl~~ 92 (100)
T PF05119_consen 57 PKKNPAVSILNKAMKQMRSLASELGLTPASRAKLAV 92 (100)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhccC
Confidence 578999988888888888888899998886554433
No 475
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=24.86 E-value=2.3e+02 Score=26.35 Aligned_cols=37 Identities=11% Similarity=0.060 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHH
Q 002975 606 ISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLT 643 (861)
Q Consensus 606 ~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~ 643 (861)
.-.|.++++.+. +.+...+..+----++.|.+.|-+.
T Consensus 41 hlSa~eI~~~L~-~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 41 AISAYDLLDLLR-EAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred CCCHHHHHHHHH-hhCCCCCcchHHHHHHHHHHCCCEE
Confidence 334455555554 2222333322222334555555443
No 476
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=24.84 E-value=2.8e+02 Score=24.99 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=21.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Q 002975 560 SMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAG 604 (861)
Q Consensus 560 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 604 (861)
.++..+.+.++.-.|.++++++.+.+..-+..|....+..+...|
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344444444444555555555555444444444444444444444
No 477
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=24.83 E-value=2.8e+02 Score=25.83 Aligned_cols=63 Identities=10% Similarity=-0.120 Sum_probs=39.3
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCc
Q 002975 237 YKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELF 299 (861)
Q Consensus 237 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 299 (861)
.+++....-+.+..--.++..+...+..-.|.++++.+.+.+..++..|....|..+...|-+
T Consensus 14 ~~~L~~~GlR~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 14 EKLCAQRNVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 333333333344444455666666666777888888888877777777766666666665544
No 478
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=24.27 E-value=4.5e+02 Score=23.05 Aligned_cols=40 Identities=8% Similarity=0.100 Sum_probs=30.8
Q ss_pred HHHHHHHHhc--cCCCCCchHHHHHHHHHHcCChhHHHHHHH
Q 002975 677 GKHAAEMILE--QDPQDPAAHILLSNLYASAGHWEYVANIRK 716 (861)
Q Consensus 677 a~~~~~~~~~--~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~ 716 (861)
...+++.+.. +...-+..|...+..+...|+|.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3455666554 455567788899999999999999999886
No 479
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=24.04 E-value=3.3e+02 Score=30.47 Aligned_cols=55 Identities=18% Similarity=0.164 Sum_probs=35.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCCC--Ce---ehHHHHHHHHHhcCChhHHHHHHHHHhh
Q 002975 428 SLISMYARSGRMEDARKAFESLFEK--NL---VSYNTMVDAYAKNLNSEKAFELLHEIED 482 (861)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~~~~~--~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~ 482 (861)
.|+.-|.+.+++++|..++..|.=. .. .+.+.+.+.+.+..-..+....++.+..
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 5777899999999999999998422 12 2334445555555545555555555543
No 480
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.90 E-value=1.1e+03 Score=26.74 Aligned_cols=148 Identities=11% Similarity=0.094 Sum_probs=0.0
Q ss_pred cHHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCC--CcccHH------
Q 002975 285 TLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDH--NVMSWT------ 356 (861)
Q Consensus 285 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~--~~~~~~------ 356 (861)
+...+-..|...|+.+.+..+ ++.++-.|++...+ +..+|+
T Consensus 286 sLLqva~~~r~qgD~e~aadL-------------------------------ieR~Ly~~d~a~hp~F~~~sg~cRL~y~ 334 (665)
T KOG2422|consen 286 SLLQVADIFRFQGDREMAADL-------------------------------IERGLYVFDRALHPNFIPFSGNCRLPYI 334 (665)
T ss_pred HHHHHHHHHHHhcchhhHHHH-------------------------------HHHHHHHHHHHhccccccccccccCccc
Q ss_pred ------------HHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhc-ccCChHHHHHHHHHHHHcCC---C
Q 002975 357 ------------AIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACG-NLLDSNVAEQVYTHAVKRGR---A 420 (861)
Q Consensus 357 ------------~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-~~~~~~~a~~i~~~~~~~g~---~ 420 (861)
.-+..+.+.|. +..|+++-+-+.+....-|......+|..|+ +..++.--+++++.....+. -
T Consensus 335 ~~eNR~FyL~l~r~m~~l~~RGC-~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~ 413 (665)
T KOG2422|consen 335 YPENRQFYLALFRYMQSLAQRGC-WRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQL 413 (665)
T ss_pred chhhHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhc
Q ss_pred CCcchhhHHHHHHHHcCC---HHHHHHHHHhcCCCCeehHHHHHHHH
Q 002975 421 LDDCVGNSLISMYARSGR---MEDARKAFESLFEKNLVSYNTMVDAY 464 (861)
Q Consensus 421 ~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~li~~~ 464 (861)
|+-..-.+|...|..... .+.|...+.+....-+...+-|+..+
T Consensus 414 PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~vl~eLld~~ 460 (665)
T KOG2422|consen 414 PNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPLVLSELLDEL 460 (665)
T ss_pred CCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcHHHHHHHHhc
No 481
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=23.89 E-value=2.7e+02 Score=31.62 Aligned_cols=35 Identities=14% Similarity=0.303 Sum_probs=16.0
Q ss_pred cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 002975 501 SIGAIGKGEQIHARIIKSGFESNHCIYNALISMYS 535 (861)
Q Consensus 501 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 535 (861)
..|++++...-...+-+.....+..+|+.++..+-
T Consensus 549 engd~d~vy~~in~lg~t~W~iN~rvf~V~~~~Wn 583 (1117)
T COG5108 549 ENGDMDKVYHSINALGNTAWSINHRVFEVMASLWN 583 (1117)
T ss_pred hcCChHHHHHHHHHhccCchhhhHHHHHHHHHHHh
Confidence 34444444444444433334445555555555443
No 482
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=23.55 E-value=7.9e+02 Score=25.00 Aligned_cols=83 Identities=13% Similarity=0.049 Sum_probs=41.5
Q ss_pred cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc----cCCHHHHHHHHHhccCCC-chHHHHHHHHHHh----cCCh
Q 002975 501 SIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSR----CANVEAAFQVFKEMEDRN-VISWTSMITGFAK----HGFA 571 (861)
Q Consensus 501 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~----~g~~ 571 (861)
..++...+...+......+ +......+..+|.. ..+...|...|....+.+ ......|...|.. ..+.
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~ 129 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDL 129 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCH
Confidence 3456666666666665533 22333444444432 334566666666544332 2333334444443 2255
Q ss_pred HHHHHHHHHHHHcCC
Q 002975 572 ARALEIFYKMLADGI 586 (861)
Q Consensus 572 ~~A~~~~~~m~~~g~ 586 (861)
.+|..+|++.-+.|.
T Consensus 130 ~~A~~~~~~Aa~~g~ 144 (292)
T COG0790 130 VKALKYYEKAAKLGN 144 (292)
T ss_pred HHHHHHHHHHHHcCC
Confidence 666666666666653
No 483
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=23.02 E-value=5e+02 Score=22.52 Aligned_cols=29 Identities=21% Similarity=0.095 Sum_probs=18.3
Q ss_pred HHHHHHHH----HHHHHhCCHHHHHHHHHHHhc
Q 002975 658 VLVWRTFL----GACRVHGDTELGKHAAEMILE 686 (861)
Q Consensus 658 ~~~~~~ll----~~~~~~g~~~~a~~~~~~~~~ 686 (861)
...|-+.+ -++...|..++|...++++-+
T Consensus 96 GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 96 GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 34565433 345667888888888877655
No 484
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=22.91 E-value=8.1e+02 Score=24.89 Aligned_cols=134 Identities=19% Similarity=0.102 Sum_probs=80.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCCCCCHHH-------HHHHHHHhhcccchHHHHHHHHHH----HHhCCCCchhHHH
Q 002975 460 MVDAYAKNLNSEKAFELLHEIEDTGVGTSAYT-------FASLLSGASSIGAIGKGEQIHARI----IKSGFESNHCIYN 528 (861)
Q Consensus 460 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-------~~~ll~a~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~ 528 (861)
+.+-..+.+++++|+..+.+....|+..|..+ ...+...|.+.|+...-.+..... ..-.-+....+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 34455677889999999999999888777644 445666677777655544443322 2222233456667
Q ss_pred HHHHHHHcc-CCHHHHHHHHHhccC---CCch------HHHHHHHHHHhcCChHHHHHHHHH----HHHcCCCCChHHH
Q 002975 529 ALISMYSRC-ANVEAAFQVFKEMED---RNVI------SWTSMITGFAKHGFAARALEIFYK----MLADGIKPNGITY 593 (861)
Q Consensus 529 ~li~~y~~~-g~~~~A~~~~~~~~~---~~~~------~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~ 593 (861)
+|++.+... ..+++-..+.....+ +.-. .=.-+|..+.+.|++.+|+.+... +.+..-+|+.++.
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 777777543 446666666665542 1111 112357777888888888776544 4444555665443
No 485
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=22.63 E-value=1.3e+03 Score=27.35 Aligned_cols=108 Identities=17% Similarity=0.115 Sum_probs=60.4
Q ss_pred CCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCC--CchhHHHHHHHHHHccCCHHHHHHHHHhcc---CC-CchH
Q 002975 484 GVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFE--SNHCIYNALISMYSRCANVEAAFQVFKEME---DR-NVIS 557 (861)
Q Consensus 484 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~-~~~~ 557 (861)
++..+......++..+ .|+..++..+++.+...... .+... =..+.+.+.+.... ++ ....
T Consensus 192 ~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~-----------It~~~~~e~l~~~~~~ydk~gd~h 258 (725)
T PRK13341 192 KVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLID-----------ITLAIAEESIQQRAVLYDKEGDAH 258 (725)
T ss_pred ccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCcee-----------ccHHHHHHHHHHhhhhcccCCCCC
Confidence 4556666666666544 68888888888876542110 00000 01222333333211 11 1123
Q ss_pred HHHHHHHH---HhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Q 002975 558 WTSMITGF---AKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGL 605 (861)
Q Consensus 558 ~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 605 (861)
|+ .|+++ .+.++++.|+.++.+|++.|..|..+.-..++.+....|.
T Consensus 259 yd-~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigl 308 (725)
T PRK13341 259 FD-TISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGL 308 (725)
T ss_pred HH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC
Confidence 32 33333 3468899999999999999988876666655555545553
No 486
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=22.50 E-value=4.4e+02 Score=30.06 Aligned_cols=47 Identities=17% Similarity=0.104 Sum_probs=30.9
Q ss_pred HHHHHhcccCChHHHHHHHHHHHHcC--CCCCcchhhHHHHHHHHcCCH
Q 002975 393 SVLKACGNLLDSNVAEQVYTHAVKRG--RALDDCVGNSLISMYARSGRM 439 (861)
Q Consensus 393 ~ll~a~~~~~~~~~a~~i~~~~~~~g--~~~~~~~~~~li~~~~~~g~~ 439 (861)
+++.+|...|++..+.++++.+...+ -..-...+|..++-+.+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 77888888888888888888776643 222334456566666666654
No 487
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=22.31 E-value=1.9e+02 Score=19.07 Aligned_cols=27 Identities=11% Similarity=0.055 Sum_probs=21.2
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHH
Q 002975 693 AAHILLSNLYASAGHWEYVANIRKRMK 719 (861)
Q Consensus 693 ~~~~~L~~~y~~~g~~~~a~~~~~~m~ 719 (861)
..|..|+.+-...++|++|.+-++...
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL 28 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKAL 28 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 467888888888889988887776543
No 488
>PRK09169 hypothetical protein; Validated
Probab=21.80 E-value=2.1e+03 Score=29.41 Aligned_cols=158 Identities=10% Similarity=-0.014 Sum_probs=85.4
Q ss_pred CCHHHHHHHHHHhhcccchHHHHHHHHHH----HHh---CCCCchhHHHHHHHHHHccCCHHH----HHHHHHhcc----
Q 002975 487 TSAYTFASLLSGASSIGAIGKGEQIHARI----IKS---GFESNHCIYNALISMYSRCANVEA----AFQVFKEME---- 551 (861)
Q Consensus 487 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~----~~~---~~~~~~~~~~~li~~y~~~g~~~~----A~~~~~~~~---- 551 (861)
.+..-+..++.++++.+..+.+...-..+ ... --..+..-....+.+++|-.+.+. |..++..+.
T Consensus 496 f~~Q~lAN~LnALsKwp~~~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~ 575 (2316)
T PRK09169 496 LDAQGLANALNALSKWPDSDACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPD 575 (2316)
T ss_pred cChHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChh
Confidence 45566777788888777666544332222 110 112345556667777777665322 233333332
Q ss_pred ---CCCchHHHHHHHHHHhcCChH----HHHHHHHHHHHc-C--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 002975 552 ---DRNVISWTSMITGFAKHGFAA----RALEIFYKMLAD-G--IKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHG 621 (861)
Q Consensus 552 ---~~~~~~~~~li~~~~~~g~~~----~A~~~~~~m~~~-g--~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 621 (861)
.-|...+.+.+.++.+-+... -+..+...+.+. + -.-|..-+.++++++++-...+........+.....
T Consensus 576 l~~~~naQ~LAN~LnALSKWP~~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~Aa~aLA~~L~ 655 (2316)
T PRK09169 576 LRSALNAQGLANLLNALSKWPDEDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQAAEALAARLL 655 (2316)
T ss_pred hhhccCHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHh
Confidence 235556677777887766532 233344444332 1 112455677788888887766655544443332111
Q ss_pred C------CCChhHHHHHHHHhhhcCCHHH
Q 002975 622 I------VQRMEHYACMVDLLGRSGSLTE 644 (861)
Q Consensus 622 ~------~p~~~~~~~l~~~~~r~g~~~e 644 (861)
- .-+..+...++.++.+-.+.+.
T Consensus 656 ~~~~l~~af~aQ~LaN~LnALSKWp~~~~ 684 (2316)
T PRK09169 656 RDAGLPRAFDAQGLANALNALSKWPDEAA 684 (2316)
T ss_pred hcchhHHhcCcHHHHHHHHHHHhCCCcHH
Confidence 1 1245667777788888776554
No 489
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=21.40 E-value=3.6e+02 Score=24.32 Aligned_cols=49 Identities=10% Similarity=-0.070 Sum_probs=29.3
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccC
Q 002975 249 VGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELE 297 (861)
Q Consensus 249 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 297 (861)
..--.++..+.+.+..-.|.++++++.+.+...+..|.-..|+.+...|
T Consensus 21 ~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 21 PQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344566666666666777777777777666655555555555544443
No 490
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=21.38 E-value=9.5e+02 Score=25.10 Aligned_cols=32 Identities=9% Similarity=0.224 Sum_probs=21.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-CCC
Q 002975 593 YIAVLSACSHAGLISEGWKHFRSMYDEHGI-VQR 625 (861)
Q Consensus 593 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~ 625 (861)
|..+..-+.++|..+.|..+++.+. ++++ .|.
T Consensus 157 ~~r~~~fl~~aG~~E~Ava~~Qa~l-E~n~~~P~ 189 (321)
T PF08424_consen 157 FLRLCRFLRQAGYTERAVALWQALL-EFNFFRPE 189 (321)
T ss_pred HHHHHHHHHHCCchHHHHHHHHHHH-HHHcCCcc
Confidence 3344444567888888988888888 4444 443
No 491
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=21.35 E-value=3e+02 Score=27.53 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=8.1
Q ss_pred HHHHhcCChHHHHHHHHHH
Q 002975 563 TGFAKHGFAARALEIFYKM 581 (861)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~m 581 (861)
.-|...|++++|+++|+.+
T Consensus 186 ~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 186 EEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 3344444444444444443
No 492
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=21.32 E-value=9.3e+02 Score=24.97 Aligned_cols=159 Identities=8% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhc----cCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 002975 511 IHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEM----EDRNVISWTSMITGFAKHGFAARALEIFYKMLADGI 586 (861)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 586 (861)
+++.+...++-++......-++.+.+.+.+|-+..+++.. .-|+.. .++-.+++.++.+ +
T Consensus 22 LlEFl~~r~iy~~keLle~k~~ll~~TNMiDy~md~~k~l~~sed~p~a~--------------~ekr~~Vla~lke--L 85 (432)
T KOG2758|consen 22 LLEFLSLRQIYDEKELLEAKLQLLNKTNMIDYVMDTYKNLHTSEDMPNAL--------------VEKRTEVLAELKE--L 85 (432)
T ss_pred HHHHhhhhccCCHHHHHHHHHHHHcccchHHHHHHHHhcccccccchHHH--------------HHHHHHHHHHHHH--H
Q ss_pred CCChHHHHHHH---HHHHhcCCHHHHHHHHHHHHhhcCCCCCh-hHHHHHHHHhhhcCCHHHHHHH---HHhCCCCCCH-
Q 002975 587 KPNGITYIAVL---SACSHAGLISEGWKHFRSMYDEHGIVQRM-EHYACMVDLLGRSGSLTEALEF---IRSMPLSADV- 658 (861)
Q Consensus 587 ~p~~~t~~~ll---~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~r~g~~~eA~~~---~~~~~~~p~~- 658 (861)
+........++ ..-.....-.+....++.+.+.+++.|+. ++.-........+|++..|-++ ++.....||.
T Consensus 86 e~ev~piv~~le~Pd~~~~~~~~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n 165 (432)
T KOG2758|consen 86 EEEVAPIVKVLENPDLIAALRSDKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRN 165 (432)
T ss_pred HHHHHHHHHHHcCHHHHHHHHhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchh
Q ss_pred ---HHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 002975 659 ---LVWRTFLGACRVHGDTELGKHAAEMILE 686 (861)
Q Consensus 659 ---~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 686 (861)
..|+-|.+--... +++.|..-+-++.+
T Consensus 166 ~lsalwGKlASEIL~q-nWd~A~edL~rLre 195 (432)
T KOG2758|consen 166 YLSALWGKLASEILTQ-NWDGALEDLTRLRE 195 (432)
T ss_pred hHHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
No 493
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=21.31 E-value=1.8e+02 Score=31.45 Aligned_cols=109 Identities=11% Similarity=0.022 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002975 605 LISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMI 684 (861)
Q Consensus 605 ~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 684 (861)
.....+.++..+.++.++..-.+.+..-.+-..-+|.+ +...++... .-.+.-.|+......||+..|.++.+.+
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~-g~~~l~~~L----GYFSligLlRvh~LLGDY~~Alk~l~~i 148 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEY-GSSPLYKML----GYFSLIGLLRVHCLLGDYYQALKVLENI 148 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhccc-ccccHHHHh----hHHHHHHHHHHHHhccCHHHHHHHhhcc
Q ss_pred h--------ccCCCCCchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 685 L--------EQDPQDPAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 685 ~--------~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
- +.-+-...+|..+|-.|.-.+|+.||.+++...
T Consensus 149 dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 149 DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>PF14376 Haem_bd: Haem-binding domain
Probab=21.09 E-value=34 Score=30.49 Aligned_cols=6 Identities=67% Similarity=1.730 Sum_probs=0.0
Q ss_pred cCCcch
Q 002975 821 CGDCHT 826 (861)
Q Consensus 821 c~~~h~ 826 (861)
|.|||+
T Consensus 44 CydCHS 49 (137)
T PF14376_consen 44 CYDCHS 49 (137)
T ss_pred ccccCC
No 495
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=21.01 E-value=1.2e+02 Score=26.72 Aligned_cols=70 Identities=17% Similarity=0.354 Sum_probs=0.0
Q ss_pred EEEeCCeEEEEEeCC-CCCCChHHHHHHHHHHHHHHHhcCcccCCCccccccchhhhhhhhhhhhHHHHHHHHhhcCCCC
Q 002975 731 WIEADNKVHKFHVGE-TSHPKTLEIYAELDQLALKIKEFGYLPDTNFVLHELEEEQKVQYLFQHSEKIAVAFGLISTSKS 809 (861)
Q Consensus 731 ~i~~~~~~~~f~~~~-~~~~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~h~e~la~~~~~~~~~~~ 809 (861)
|+.-.+..-.|..|| ..+|++..+--.|++|.+++..... .+..-|+++ ...||.-||+.+.|
T Consensus 30 ~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v----~~akVDiD~----------~~~LA~~fgV~siP-- 93 (132)
T PRK11509 30 WLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTW----QVAIADLEQ----------SEAIGDRFGVFRFP-- 93 (132)
T ss_pred HHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCce----EEEEEECCC----------CHHHHHHcCCccCC--
Q ss_pred CcEEEEcc
Q 002975 810 KPIRVFKN 817 (861)
Q Consensus 810 ~~~~~~~n 817 (861)
++-++||
T Consensus 94 -TLl~Fkd 100 (132)
T PRK11509 94 -ATLVFTG 100 (132)
T ss_pred -EEEEEEC
No 496
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=20.78 E-value=6.8e+02 Score=27.47 Aligned_cols=202 Identities=16% Similarity=0.130 Sum_probs=0.0
Q ss_pred ChHHHHHHHHhcCCCCCceeHHHHHHHHHhcCC-----------hhHHHHHHHHHHHcCCCCCcccHHHHHHHhcCCcch
Q 002975 128 DLNEANKIFKSMGNKRDIVSWSSMISSYVNRGK-----------QVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENV 196 (861)
Q Consensus 128 ~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~-----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 196 (861)
++++|....+.+ |....+...+.-.-+.|. +++-+++++.+.+.| ........|.+|.+.+++
T Consensus 29 d~~eav~y~k~~---p~~k~f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g---~ad~lp~TIDSyTR~n~y 102 (480)
T TIGR01503 29 DLQDAVDYHKSI---PAHKNFAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEG---GADFLPSTIDAYTRQNRY 102 (480)
T ss_pred CHHHHHHHHHhC---CccccHHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHcc---CCCccceeeecccccccH
Q ss_pred hhhhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 002975 197 AIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMIL 276 (861)
Q Consensus 197 ~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 276 (861)
+.|+..++.-++.| .++++.|---.-.++..+++.+....| .+-
T Consensus 103 ~~A~~~l~~s~~~~---------~s~LNGfP~VnhGv~~~R~l~~~v~~P---------------------------vQv 146 (480)
T TIGR01503 103 DEAAVGIKESIKAG---------RSLLNGFPGVNHGVKGCRKVLEAVNLP---------------------------LQI 146 (480)
T ss_pred HHHHHHHHhhhhcC---------cccccCCCcccccHHHHHHHHHhCCCC---------------------------eec
Q ss_pred CCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCcccHH
Q 002975 277 SGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWT 356 (861)
Q Consensus 277 ~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~ 356 (861)
..-.|| ++.+++.+...|+....--.-+.---|+|.-. ++++..-
T Consensus 147 RHGtpD-------------------arlL~e~~~a~G~~a~EGG~ISYnlPYsK~vp---Le~si~~------------- 191 (480)
T TIGR01503 147 RHGTPD-------------------ARLLAEIILAGGFTSFEGGGISYNIPYAKNVT---LEKSLED------------- 191 (480)
T ss_pred cCCCCc-------------------HHHHHHHHHHcCCCccCCCcceeccccCCCCC---HHHHHHH-------------
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHc
Q 002975 357 AIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARS 436 (861)
Q Consensus 357 ~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~ 436 (861)
|+.+-++.-...+.|+..|..+|..|...+ ++|....--.++.++.-.
T Consensus 192 ------------WqyvdRL~g~y~e~gv~InrE~FGpLtgtL--------------------vPPsisiav~ilE~Lla~ 239 (480)
T TIGR01503 192 ------------WQYCDRLVGFYEEQGVHINREPFGPLTGTL--------------------VPPSISNAIGIIEGLLAA 239 (480)
T ss_pred ------------HHHHHHHHHHHHhcCceeccccccCCCCCc--------------------cChHHHHHHHHHHHHHHH
Q ss_pred CC
Q 002975 437 GR 438 (861)
Q Consensus 437 g~ 438 (861)
.+
T Consensus 240 eq 241 (480)
T TIGR01503 240 EQ 241 (480)
T ss_pred Hc
No 497
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=20.74 E-value=8.2e+02 Score=24.15 Aligned_cols=141 Identities=11% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCH
Q 002975 461 VDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANV 540 (861)
Q Consensus 461 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 540 (861)
+..|...-++.-|-..+.+.. .+.--...+--|.+..+.+--.++.+-....+++-+..-..+++ +...|++
T Consensus 137 MEiyS~ttRFalaCN~s~KIi------EPIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDM 208 (333)
T KOG0991|consen 137 MEIYSNTTRFALACNQSEKII------EPIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDM 208 (333)
T ss_pred HHHHcccchhhhhhcchhhhh------hhHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchH
Q ss_pred HHHHHHHHhccC----------------CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Q 002975 541 EAAFQVFKEMED----------------RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAG 604 (861)
Q Consensus 541 ~~A~~~~~~~~~----------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 604 (861)
..|+.-++.... |.+.....|+..+.... +++|.+.+.++-+.|+.|....-+ +...+-...
T Consensus 209 RQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~~~-~~~A~~il~~lw~lgysp~Dii~~-~FRv~K~~~ 286 (333)
T KOG0991|consen 209 RQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLKRN-IDEALKILAELWKLGYSPEDIITT-LFRVVKNMD 286 (333)
T ss_pred HHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHhcc-HHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHhcc
Q ss_pred CHHHHHHH
Q 002975 605 LISEGWKH 612 (861)
Q Consensus 605 ~~~~a~~~ 612 (861)
+.|-.++
T Consensus 287 -~~E~~rl 293 (333)
T KOG0991|consen 287 -VAESLRL 293 (333)
T ss_pred -HHHHHHH
No 498
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=20.68 E-value=53 Score=20.64 Aligned_cols=9 Identities=56% Similarity=1.069 Sum_probs=0.0
Q ss_pred HHHHHHhhc
Q 002975 797 IAVAFGLIS 805 (861)
Q Consensus 797 la~~~~~~~ 805 (861)
||.|||+|+
T Consensus 12 LAcAFgiin 20 (37)
T COG4890 12 LACAFGIIN 20 (37)
T ss_pred HHHHHHHHH
No 499
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=20.35 E-value=1e+03 Score=25.06 Aligned_cols=137 Identities=12% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHhcCCChHHHHHHHHhcCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhcCCcchhh
Q 002975 119 LISLYSKCGDLNEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAI 198 (861)
Q Consensus 119 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 198 (861)
+-+.++|.++.+.+..+-+.++. --.....+|..++-...-.+...+.+.+..+.. ||..+...++++.+.......
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~-lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~--~d~~~~~a~lRAls~~~~~~~ 248 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPH-LPPEVLYALCGCLEHQPLPDKLAEALLERLEQA--PDLELLSALLRALSSAPASDL 248 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhh-CChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHcCCCchhH
Q ss_pred hhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCCCC-cchHHHHHHHHH
Q 002975 199 GHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEKN-TVGWTLMITRCT 259 (861)
Q Consensus 199 a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~ 259 (861)
....+..+++.. ...+..+..++..-+...-.+.+.+...++.+...+ ...||.+.+-++
T Consensus 249 ~~~~i~~~L~~~-~~~~~e~Li~IAgR~W~~L~d~~~l~~fle~LA~~~~~~lF~qlfaDLv 309 (340)
T PF12069_consen 249 VAILIDALLQSP-RLCHPEVLIAIAGRCWQWLKDPQLLRLFLERLAQQDDQALFNQLFADLV 309 (340)
T ss_pred HHHHHHHHhcCc-ccCChHHHHHHHhcCchhcCCHHHHHHHHHHHHcccHHHHHHHHHHHHH
Done!