Query 002975
Match_columns 861
No_of_seqs 829 out of 5386
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 08:39:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002975.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002975hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 5.3E-40 1.8E-44 381.4 40.2 476 230-720 66-578 (597)
2 2xpi_A Anaphase-promoting comp 100.0 8.9E-40 3E-44 379.5 39.0 496 123-704 63-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 99.9 6.5E-24 2.2E-28 231.5 41.1 348 361-720 8-367 (388)
4 4g26_A Pentatricopeptide repea 99.9 2.6E-26 8.9E-31 254.5 21.5 184 455-639 27-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 1.3E-23 4.3E-28 229.2 41.9 362 337-707 15-388 (388)
6 4g26_A Pentatricopeptide repea 99.9 2.1E-26 7.2E-31 255.2 19.0 213 369-603 6-223 (501)
7 2y4t_A DNAJ homolog subfamily 99.9 8.7E-22 3E-26 219.3 30.6 322 351-701 25-372 (450)
8 2gw1_A Mitochondrial precursor 99.9 4.9E-21 1.7E-25 217.1 33.1 436 251-698 9-489 (514)
9 2gw1_A Mitochondrial precursor 99.9 1.9E-20 6.6E-25 212.2 32.6 389 320-720 8-477 (514)
10 2y4t_A DNAJ homolog subfamily 99.9 1.8E-19 6.2E-24 200.5 33.6 365 315-710 23-443 (450)
11 3fp2_A TPR repeat-containing p 99.9 1E-18 3.6E-23 199.2 37.8 424 249-720 26-490 (537)
12 1xi4_A Clathrin heavy chain; a 99.8 7.5E-16 2.6E-20 179.6 56.8 549 109-713 721-1376(1630)
13 3fp2_A TPR repeat-containing p 99.8 7.7E-18 2.6E-22 192.0 38.0 236 457-697 246-501 (537)
14 1xi4_A Clathrin heavy chain; a 99.8 1E-14 3.4E-19 170.3 59.6 331 323-705 990-1327(1630)
15 3ieg_A DNAJ homolog subfamily 99.8 3.6E-17 1.2E-21 175.5 36.3 304 389-720 4-334 (359)
16 3ieg_A DNAJ homolog subfamily 99.8 3.1E-17 1.1E-21 176.0 33.7 326 351-705 2-353 (359)
17 3hym_B Cell division cycle pro 99.8 5.7E-17 1.9E-21 171.8 31.4 286 420-709 19-322 (330)
18 3hym_B Cell division cycle pro 99.8 8.4E-16 2.9E-20 162.7 31.6 263 452-720 20-298 (330)
19 1fch_A Peroxisomal targeting s 99.7 2.1E-16 7.1E-21 170.4 26.8 278 433-716 35-354 (368)
20 1b89_A Protein (clathrin heavy 99.7 1.1E-16 3.9E-21 168.3 21.4 278 230-576 16-303 (449)
21 2xm6_A Protein corresponding t 99.7 1.8E-14 6.1E-19 161.7 37.9 349 337-705 59-453 (490)
22 1b89_A Protein (clathrin heavy 99.7 2.2E-16 7.7E-21 166.0 20.4 347 337-720 19-384 (449)
23 4eqf_A PEX5-related protein; a 99.7 5.7E-16 2E-20 166.8 22.8 258 453-716 64-351 (365)
24 3mkr_A Coatomer subunit epsilo 99.7 1.9E-15 6.4E-20 156.2 25.3 247 432-720 8-263 (291)
25 2ooe_A Cleavage stimulation fa 99.7 6E-14 2E-18 159.1 39.7 390 318-720 13-491 (530)
26 2xm6_A Protein corresponding t 99.7 1.1E-13 3.8E-18 155.2 40.7 350 351-722 38-433 (490)
27 1fch_A Peroxisomal targeting s 99.7 7.8E-16 2.7E-20 165.9 21.6 274 437-720 15-313 (368)
28 3mkr_A Coatomer subunit epsilo 99.7 9E-15 3.1E-19 151.1 28.0 273 396-714 7-287 (291)
29 4eqf_A PEX5-related protein; a 99.7 1.9E-15 6.7E-20 162.6 23.1 230 488-720 64-309 (365)
30 3cv0_A Peroxisome targeting si 99.7 4.5E-15 1.5E-19 156.8 25.0 258 455-717 22-311 (327)
31 4g1t_A Interferon-induced prot 99.7 2.8E-14 9.6E-19 159.5 32.4 331 388-732 94-470 (472)
32 2ooe_A Cleavage stimulation fa 99.7 3.3E-13 1.1E-17 153.0 39.5 416 213-691 10-496 (530)
33 3spa_A Mtrpol, DNA-directed RN 99.6 3.8E-16 1.3E-20 176.7 9.1 129 520-649 123-259 (1134)
34 3spa_A Mtrpol, DNA-directed RN 99.6 4.4E-16 1.5E-20 176.2 6.9 150 455-640 128-286 (1134)
35 3cv0_A Peroxisome targeting si 99.6 1.5E-13 5.1E-18 145.0 25.0 185 428-617 60-267 (327)
36 3uq3_A Heat shock protein STI1 99.6 1.5E-13 5.3E-18 139.3 23.1 215 492-720 8-235 (258)
37 2pl2_A Hypothetical conserved 99.6 4.7E-14 1.6E-18 139.0 17.8 193 521-718 2-211 (217)
38 4g1t_A Interferon-induced prot 99.6 6.8E-13 2.3E-17 148.2 29.0 388 248-699 51-471 (472)
39 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.8E-13 9.6E-18 139.0 21.8 241 466-715 17-269 (275)
40 3uq3_A Heat shock protein STI1 99.5 3.3E-13 1.1E-17 136.9 21.5 234 456-700 7-255 (258)
41 3u4t_A TPR repeat-containing p 99.5 6.4E-12 2.2E-16 128.6 27.3 252 426-706 6-269 (272)
42 2h6f_A Protein farnesyltransfe 99.5 2E-12 6.8E-17 138.1 21.5 244 455-705 98-366 (382)
43 2ho1_A Type 4 fimbrial biogene 99.5 4.1E-12 1.4E-16 128.4 22.3 196 524-721 37-238 (252)
44 2vq2_A PILW, putative fimbrial 99.5 6.5E-12 2.2E-16 124.2 22.9 197 522-720 6-210 (225)
45 3e4b_A ALGK; tetratricopeptide 99.5 4.5E-12 1.5E-16 139.9 23.4 343 358-723 9-389 (452)
46 1ouv_A Conserved hypothetical 99.5 2.3E-11 7.8E-16 124.7 27.1 214 497-722 14-252 (273)
47 2q7f_A YRRB protein; TPR, prot 99.4 1.9E-12 6.6E-17 129.9 17.6 178 524-704 57-239 (243)
48 3e4b_A ALGK; tetratricopeptide 99.4 1.3E-11 4.5E-16 136.1 25.6 349 296-701 16-399 (452)
49 2h6f_A Protein farnesyltransfe 99.4 4.4E-12 1.5E-16 135.4 20.8 224 490-720 98-347 (382)
50 2ho1_A Type 4 fimbrial biogene 99.4 1.7E-11 5.8E-16 123.8 24.2 205 455-697 38-248 (252)
51 2vq2_A PILW, putative fimbrial 99.4 1.2E-11 4.2E-16 122.1 22.7 206 491-699 10-223 (225)
52 1ouv_A Conserved hypothetical 99.4 2.2E-11 7.6E-16 124.7 25.3 226 453-691 5-255 (273)
53 2q7f_A YRRB protein; TPR, prot 99.4 4.9E-12 1.7E-16 126.9 18.4 196 522-720 21-221 (243)
54 4a1s_A PINS, partner of inscut 99.4 3.5E-12 1.2E-16 139.5 18.5 261 459-720 53-371 (411)
55 3u4t_A TPR repeat-containing p 99.4 1.5E-11 5.2E-16 125.8 21.9 219 496-720 10-249 (272)
56 2pl2_A Hypothetical conserved 99.4 2.3E-11 7.9E-16 119.6 21.9 189 456-651 7-210 (217)
57 3sf4_A G-protein-signaling mod 99.4 8.1E-12 2.8E-16 136.1 20.1 263 457-720 12-335 (406)
58 3ro2_A PINS homolog, G-protein 99.4 2E-11 6.7E-16 129.0 22.4 260 460-720 11-331 (338)
59 4abn_A Tetratricopeptide repea 99.4 3.2E-12 1.1E-16 142.0 16.1 207 505-717 84-317 (474)
60 3vtx_A MAMA; tetratricopeptide 99.4 2.8E-11 9.6E-16 115.6 20.6 164 554-721 4-170 (184)
61 3sf4_A G-protein-signaling mod 99.4 7.3E-12 2.5E-16 136.5 17.6 290 390-710 11-365 (406)
62 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.6E-11 5.5E-16 125.7 19.1 216 500-721 16-244 (275)
63 4a1s_A PINS, partner of inscut 99.3 2.3E-11 8E-16 132.9 17.2 265 393-689 53-374 (411)
64 4gyw_A UDP-N-acetylglucosamine 99.3 2.4E-11 8.1E-16 140.3 17.7 160 555-719 9-172 (723)
65 2ond_A Cleavage stimulation fa 99.3 9.2E-10 3.1E-14 114.8 26.6 220 471-694 33-277 (308)
66 3ro2_A PINS homolog, G-protein 99.3 9.2E-11 3.2E-15 123.7 18.6 199 492-690 86-335 (338)
67 3vtx_A MAMA; tetratricopeptide 99.3 1.6E-10 5.5E-15 110.2 18.5 166 523-692 4-175 (184)
68 3nf1_A KLC 1, kinesin light ch 99.3 1.4E-11 4.8E-16 128.7 11.1 240 455-719 28-305 (311)
69 4e6h_A MRNA 3'-END-processing 99.3 3.3E-08 1.1E-12 112.6 39.2 218 472-694 327-577 (679)
70 3nf1_A KLC 1, kinesin light ch 99.3 2.2E-11 7.4E-16 127.2 12.2 247 422-690 26-310 (311)
71 3ulq_A Response regulator aspa 99.2 1.8E-10 6.3E-15 124.4 19.3 194 525-719 144-366 (383)
72 4abn_A Tetratricopeptide repea 99.2 1.9E-10 6.3E-15 127.7 19.5 177 539-720 83-286 (474)
73 4i17_A Hypothetical protein; T 99.2 3.8E-10 1.3E-14 111.9 19.4 205 487-703 5-225 (228)
74 3ulq_A Response regulator aspa 99.2 3E-10 1E-14 122.8 19.7 230 460-689 109-370 (383)
75 4i17_A Hypothetical protein; T 99.2 2.9E-10 1E-14 112.7 17.2 189 523-720 6-208 (228)
76 3as5_A MAMA; tetratricopeptide 99.2 5.7E-10 1.9E-14 106.1 18.5 159 526-720 10-172 (186)
77 2ond_A Cleavage stimulation fa 99.2 1E-09 3.5E-14 114.4 21.7 212 506-722 33-271 (308)
78 1hz4_A MALT regulatory protein 99.2 1E-08 3.5E-13 110.1 29.0 259 462-720 22-321 (373)
79 4e6h_A MRNA 3'-END-processing 99.2 4.9E-08 1.7E-12 111.2 34.7 100 94-194 48-153 (679)
80 3as5_A MAMA; tetratricopeptide 99.1 2.2E-09 7.6E-14 101.9 18.6 170 489-694 8-180 (186)
81 3q15_A PSP28, response regulat 99.1 1.8E-09 6.3E-14 116.2 19.7 219 500-719 112-363 (378)
82 1qqe_A Vesicular transport pro 99.1 2.9E-09 1E-13 109.9 17.8 186 533-718 46-266 (292)
83 3q15_A PSP28, response regulat 99.1 3.3E-08 1.1E-12 106.4 26.5 228 460-687 107-365 (378)
84 4gyw_A UDP-N-acetylglucosamine 99.0 1.5E-09 5.1E-14 125.3 14.9 165 521-690 6-177 (723)
85 3edt_B KLC 2, kinesin light ch 99.0 1.7E-09 5.8E-14 110.8 13.3 37 684-720 244-280 (283)
86 3qky_A Outer membrane assembly 99.0 1.2E-08 3.9E-13 103.5 18.4 204 522-767 13-247 (261)
87 1qqe_A Vesicular transport pro 99.0 8E-09 2.7E-13 106.6 17.2 213 438-694 32-276 (292)
88 1hz4_A MALT regulatory protein 98.9 3.6E-07 1.2E-11 97.9 28.5 155 361-516 23-201 (373)
89 4ga2_A E3 SUMO-protein ligase 98.9 1E-09 3.5E-14 100.4 6.9 135 568-707 10-149 (150)
90 3edt_B KLC 2, kinesin light ch 98.9 2.7E-08 9.3E-13 101.7 18.3 199 490-688 44-282 (283)
91 3qky_A Outer membrane assembly 98.9 2.8E-08 9.6E-13 100.6 17.8 203 486-710 12-250 (261)
92 2pzi_A Probable serine/threoni 98.9 3.4E-08 1.2E-12 114.7 19.8 147 555-707 433-583 (681)
93 2yhc_A BAMD, UPF0169 lipoprote 98.9 5.5E-08 1.9E-12 95.9 18.3 182 524-724 4-216 (225)
94 3qou_A Protein YBBN; thioredox 98.9 2.5E-08 8.4E-13 102.5 16.2 172 542-718 104-281 (287)
95 3mv2_B Coatomer subunit epsilo 98.9 3.9E-07 1.3E-11 92.0 23.7 173 543-720 85-281 (310)
96 3mv2_B Coatomer subunit epsilo 98.8 3.3E-07 1.1E-11 92.5 21.1 240 435-696 25-291 (310)
97 2fo7_A Synthetic consensus TPR 98.8 1.4E-07 4.7E-12 83.8 16.7 129 557-720 3-131 (136)
98 4ga2_A E3 SUMO-protein ligase 98.8 1.4E-08 4.8E-13 92.8 9.8 122 596-720 3-128 (150)
99 2fo7_A Synthetic consensus TPR 98.8 9.9E-08 3.4E-12 84.7 15.3 95 628-722 3-99 (136)
100 3rjv_A Putative SEL1 repeat pr 98.8 3.6E-07 1.2E-11 89.0 19.7 172 543-723 5-199 (212)
101 2r5s_A Uncharacterized protein 98.8 6.2E-08 2.1E-12 91.3 13.7 74 645-718 93-170 (176)
102 2ifu_A Gamma-SNAP; membrane fu 98.7 3.8E-07 1.3E-11 94.7 18.9 219 467-714 4-254 (307)
103 2pzi_A Probable serine/threoni 98.7 2.5E-07 8.6E-12 107.3 19.3 191 500-697 402-612 (681)
104 4gco_A Protein STI-1; structur 98.7 1.5E-07 5.2E-12 82.8 13.1 93 628-720 15-109 (126)
105 2vsy_A XCC0866; transferase, g 98.7 1.4E-07 4.7E-12 107.6 16.3 159 537-699 2-169 (568)
106 2vgx_A Chaperone SYCD; alterna 98.7 6.3E-08 2.1E-12 88.1 10.6 95 626-720 21-117 (148)
107 3gyz_A Chaperone protein IPGC; 98.7 9.6E-08 3.3E-12 86.8 11.5 94 627-720 37-132 (151)
108 2vsy_A XCC0866; transferase, g 98.7 3E-07 1E-11 104.8 17.5 146 502-652 2-154 (568)
109 3urz_A Uncharacterized protein 98.7 3.9E-07 1.3E-11 88.4 15.6 125 561-691 60-190 (208)
110 3dra_A Protein farnesyltransfe 98.6 5.1E-06 1.7E-10 84.8 24.0 210 506-720 50-286 (306)
111 4gco_A Protein STI-1; structur 98.6 2.8E-07 9.5E-12 81.1 12.5 108 592-701 15-124 (126)
112 2yhc_A BAMD, UPF0169 lipoprote 98.6 1.5E-06 5.1E-11 85.5 18.4 186 488-694 3-220 (225)
113 3u3w_A Transcriptional activat 98.6 1.5E-06 5.3E-11 89.4 19.3 158 562-719 82-264 (293)
114 1hh8_A P67PHOX, NCF-2, neutrop 98.6 7.6E-07 2.6E-11 86.6 15.9 123 594-721 10-150 (213)
115 3urz_A Uncharacterized protein 98.6 8E-07 2.7E-11 86.2 15.8 183 459-666 9-198 (208)
116 2xcb_A PCRH, regulatory protei 98.6 4.3E-07 1.5E-11 81.9 13.0 94 627-720 19-114 (142)
117 2c2l_A CHIP, carboxy terminus 98.6 9.8E-08 3.3E-12 97.6 9.2 190 523-720 3-198 (281)
118 3qou_A Protein YBBN; thioredox 98.6 1.6E-06 5.6E-11 88.8 18.1 160 489-651 117-280 (287)
119 3rjv_A Putative SEL1 repeat pr 98.6 3.3E-06 1.1E-10 82.0 19.2 172 508-689 5-199 (212)
120 2qfc_A PLCR protein; TPR, HTH, 98.6 1.8E-06 6.2E-11 88.8 18.3 163 557-719 77-264 (293)
121 3dra_A Protein farnesyltransfe 98.6 1.5E-05 5.1E-10 81.3 24.4 228 467-700 46-301 (306)
122 2uy1_A Cleavage stimulation fa 98.5 5.1E-05 1.7E-09 83.8 30.2 202 471-685 196-411 (493)
123 3upv_A Heat shock protein STI1 98.5 6.3E-07 2.1E-11 78.8 12.0 94 627-720 5-100 (126)
124 2ifu_A Gamma-SNAP; membrane fu 98.5 7.2E-07 2.5E-11 92.6 13.5 197 501-719 3-222 (307)
125 1hh8_A P67PHOX, NCF-2, neutrop 98.5 7.6E-06 2.6E-10 79.4 20.0 146 526-692 8-155 (213)
126 4f3v_A ESX-1 secretion system 98.5 9.6E-07 3.3E-11 87.9 13.2 180 536-720 18-236 (282)
127 4f3v_A ESX-1 secretion system 98.5 3.2E-07 1.1E-11 91.3 9.6 136 560-700 107-249 (282)
128 2r5s_A Uncharacterized protein 98.5 2.5E-06 8.6E-11 80.1 15.5 155 425-582 8-171 (176)
129 2lni_A Stress-induced-phosphop 98.5 1.4E-06 4.6E-11 77.1 13.0 113 592-707 18-133 (133)
130 1p5q_A FKBP52, FK506-binding p 98.5 6.8E-07 2.3E-11 93.9 12.2 143 554-718 146-291 (336)
131 1na0_A Designed protein CTPR3; 98.5 2.6E-06 9.1E-11 74.1 14.1 113 592-706 11-125 (125)
132 1a17_A Serine/threonine protei 98.4 3E-06 1E-10 78.4 14.6 94 627-720 48-145 (166)
133 2vyi_A SGTA protein; chaperone 98.4 3E-06 1E-10 74.5 13.4 116 592-709 14-131 (131)
134 3u3w_A Transcriptional activat 98.4 2.6E-05 8.9E-10 80.1 22.4 159 529-687 80-266 (293)
135 2e2e_A Formate-dependent nitri 98.4 3E-06 1E-10 79.6 13.0 94 628-721 46-144 (177)
136 3gw4_A Uncharacterized protein 98.4 6.4E-06 2.2E-10 79.1 15.2 156 536-720 4-175 (203)
137 2qfc_A PLCR protein; TPR, HTH, 98.4 1.1E-05 3.9E-10 82.8 18.0 162 526-687 77-266 (293)
138 2uy1_A Cleavage stimulation fa 98.4 0.0002 6.8E-09 79.0 29.1 201 372-583 198-412 (493)
139 1wao_1 Serine/threonine protei 98.4 1.4E-06 4.7E-11 96.2 11.6 91 627-717 41-135 (477)
140 1hxi_A PEX5, peroxisome target 98.3 1.4E-06 4.9E-11 75.8 9.2 92 629-720 20-113 (121)
141 3sz7_A HSC70 cochaperone (SGT) 98.3 2.6E-06 8.9E-11 78.9 11.3 94 627-720 12-107 (164)
142 2fbn_A 70 kDa peptidylprolyl i 98.3 5.3E-07 1.8E-11 86.7 6.6 170 528-718 8-183 (198)
143 1elw_A TPR1-domain of HOP; HOP 98.3 8.4E-06 2.9E-10 70.0 13.6 93 628-720 6-100 (118)
144 2vgx_A Chaperone SYCD; alterna 98.3 1.9E-06 6.5E-11 78.2 9.4 104 592-698 23-129 (148)
145 3gyz_A Chaperone protein IPGC; 98.3 3E-06 1E-10 76.8 10.4 104 586-692 31-138 (151)
146 3gw4_A Uncharacterized protein 98.3 1.7E-05 5.8E-10 76.1 16.5 129 523-651 25-172 (203)
147 3q49_B STIP1 homology and U bo 98.3 5.8E-06 2E-10 73.6 11.9 96 625-720 8-105 (137)
148 2e2e_A Formate-dependent nitri 98.3 6.4E-06 2.2E-10 77.3 12.8 129 566-698 21-155 (177)
149 3rkv_A Putative peptidylprolyl 98.3 5.1E-06 1.7E-10 76.7 11.7 85 657-767 62-147 (162)
150 1na0_A Designed protein CTPR3; 98.3 1.3E-05 4.6E-10 69.5 13.8 95 626-720 9-105 (125)
151 2kck_A TPR repeat; tetratricop 98.3 4.4E-06 1.5E-10 71.0 10.1 96 627-722 7-107 (112)
152 3q7a_A Farnesyltransferase alp 98.2 0.0001 3.6E-09 75.8 21.6 209 507-720 72-330 (349)
153 4gcn_A Protein STI-1; structur 98.2 4.7E-06 1.6E-10 73.2 10.0 93 628-720 10-111 (127)
154 2dba_A Smooth muscle cell asso 98.2 1.4E-05 4.8E-10 72.0 13.5 76 628-703 67-144 (148)
155 2vyi_A SGTA protein; chaperone 98.2 1.3E-05 4.5E-10 70.2 12.9 95 626-720 12-108 (131)
156 1a17_A Serine/threonine protei 98.2 1.9E-05 6.5E-10 72.8 14.4 88 528-617 17-108 (166)
157 2lni_A Stress-induced-phosphop 98.2 9.4E-06 3.2E-10 71.6 11.6 96 625-720 15-112 (133)
158 2dba_A Smooth muscle cell asso 98.2 2E-05 6.9E-10 70.9 14.0 96 625-720 27-127 (148)
159 2xcb_A PCRH, regulatory protei 98.2 5E-06 1.7E-10 74.7 9.8 108 592-701 20-129 (142)
160 1elw_A TPR1-domain of HOP; HOP 98.2 1.4E-05 4.8E-10 68.6 12.3 75 628-702 40-116 (118)
161 3sz7_A HSC70 cochaperone (SGT) 98.2 1.1E-05 3.7E-10 74.6 11.9 107 592-700 13-121 (164)
162 3dss_A Geranylgeranyl transfer 98.1 0.00032 1.1E-08 71.9 22.9 226 466-700 41-317 (331)
163 2c2l_A CHIP, carboxy terminus 98.1 1.3E-05 4.4E-10 81.7 12.3 191 489-689 4-201 (281)
164 3q7a_A Farnesyltransferase alp 98.1 0.00049 1.7E-08 70.9 23.8 230 463-698 63-343 (349)
165 3upv_A Heat shock protein STI1 98.1 2.3E-05 8E-10 68.5 12.3 111 557-703 6-123 (126)
166 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 2.1E-05 7.1E-10 86.4 14.5 143 554-718 267-412 (457)
167 1elr_A TPR2A-domain of HOP; HO 98.1 2.2E-05 7.6E-10 68.7 11.7 94 627-720 5-107 (131)
168 1wao_1 Serine/threonine protei 98.1 1.2E-05 4.1E-10 88.7 11.1 115 532-650 14-134 (477)
169 2hr2_A Hypothetical protein; a 98.1 1.3E-05 4.6E-10 71.7 9.2 63 658-720 57-130 (159)
170 2fbn_A 70 kDa peptidylprolyl i 98.0 4.1E-05 1.4E-09 73.3 13.2 62 659-720 89-150 (198)
171 2hr2_A Hypothetical protein; a 98.0 1.2E-05 4.1E-10 72.1 8.2 112 557-699 13-143 (159)
172 2xev_A YBGF; tetratricopeptide 98.0 3.1E-05 1.1E-09 67.9 11.0 89 632-720 8-104 (129)
173 1p5q_A FKBP52, FK506-binding p 98.0 4.6E-05 1.6E-09 79.8 14.0 129 571-720 129-258 (336)
174 3k9i_A BH0479 protein; putativ 98.0 4.8E-06 1.7E-10 71.9 5.2 83 638-720 2-89 (117)
175 3q49_B STIP1 homology and U bo 98.0 4.6E-05 1.6E-09 67.6 11.7 108 591-700 10-124 (137)
176 4b4t_Q 26S proteasome regulato 98.0 4.8E-05 1.6E-09 83.1 14.2 162 558-719 58-243 (434)
177 4gcn_A Protein STI-1; structur 98.0 3.9E-05 1.3E-09 67.2 10.8 56 528-583 12-70 (127)
178 3dss_A Geranylgeranyl transfer 98.0 0.0012 4E-08 67.7 23.1 211 506-720 47-303 (331)
179 1ihg_A Cyclophilin 40; ppiase 98.0 4.9E-05 1.7E-09 80.6 13.0 87 627-713 274-362 (370)
180 3rkv_A Putative peptidylprolyl 97.9 3.7E-05 1.3E-09 70.8 9.8 123 557-704 13-144 (162)
181 3ro3_A PINS homolog, G-protein 97.9 6.6E-05 2.3E-09 68.5 11.3 136 556-720 10-157 (164)
182 1hxi_A PEX5, peroxisome target 97.9 4.4E-05 1.5E-09 66.2 9.4 94 596-692 23-119 (121)
183 1elr_A TPR2A-domain of HOP; HO 97.9 0.00014 4.6E-09 63.6 12.5 116 556-704 5-124 (131)
184 3n71_A Histone lysine methyltr 97.9 5.4E-05 1.9E-09 82.8 11.6 70 655-724 389-467 (490)
185 2xev_A YBGF; tetratricopeptide 97.9 0.00012 4.2E-09 64.0 11.9 44 658-701 76-119 (129)
186 4b4t_Q 26S proteasome regulato 97.9 0.00027 9.2E-09 77.0 17.3 161 492-652 58-242 (434)
187 1dce_A Protein (RAB geranylger 97.9 0.0005 1.7E-08 77.1 19.7 167 539-710 44-244 (567)
188 3ro3_A PINS homolog, G-protein 97.8 6.6E-05 2.3E-09 68.5 10.2 136 524-688 9-159 (164)
189 2if4_A ATFKBP42; FKBP-like, al 97.8 2E-05 7E-10 82.6 7.4 146 555-720 179-327 (338)
190 1ihg_A Cyclophilin 40; ppiase 97.8 8.9E-05 3E-09 78.6 12.0 112 590-720 223-335 (370)
191 2kck_A TPR repeat; tetratricop 97.8 0.00016 5.4E-09 61.1 11.4 91 525-617 7-104 (112)
192 2l6j_A TPR repeat-containing p 97.8 3.6E-05 1.2E-09 65.3 7.2 89 626-714 4-100 (111)
193 3k9i_A BH0479 protein; putativ 97.8 2.4E-05 8.4E-10 67.4 6.2 77 628-704 29-107 (117)
194 3ma5_A Tetratricopeptide repea 97.8 8.2E-05 2.8E-09 61.8 9.1 65 656-720 5-69 (100)
195 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00013 4.5E-09 80.0 12.8 131 570-721 249-380 (457)
196 2if4_A ATFKBP42; FKBP-like, al 97.8 4.1E-05 1.4E-09 80.3 8.3 151 524-692 179-333 (338)
197 1na3_A Designed protein CTPR2; 97.7 0.00011 3.7E-09 59.6 8.8 80 627-706 10-91 (91)
198 1zu2_A Mitochondrial import re 97.6 4E-05 1.4E-09 68.5 4.6 84 638-721 14-120 (158)
199 3bee_A Putative YFRE protein; 97.6 0.00026 9E-09 57.5 8.8 69 655-723 3-74 (93)
200 2kat_A Uncharacterized protein 97.6 0.00017 6E-09 61.6 8.1 76 645-720 4-81 (115)
201 3n71_A Histone lysine methyltr 97.5 0.00027 9.1E-09 77.3 10.1 114 636-767 319-450 (490)
202 2l6j_A TPR repeat-containing p 97.4 0.0011 3.6E-08 55.9 10.7 65 657-721 3-67 (111)
203 3qwp_A SET and MYND domain-con 97.4 0.00045 1.5E-08 74.4 9.9 90 659-766 330-427 (429)
204 1na3_A Designed protein CTPR2; 97.3 0.0013 4.4E-08 52.9 10.0 64 657-720 8-71 (91)
205 1klx_A Cysteine rich protein B 97.3 0.0023 7.8E-08 56.7 12.0 111 569-722 9-127 (138)
206 1klx_A Cysteine rich protein B 97.2 0.0011 3.9E-08 58.6 9.1 106 538-652 9-123 (138)
207 3qww_A SET and MYND domain-con 97.2 0.00052 1.8E-08 73.7 7.4 62 659-720 341-410 (433)
208 3ly7_A Transcriptional activat 97.1 0.0094 3.2E-07 61.2 15.8 46 553-600 192-243 (372)
209 1dce_A Protein (RAB geranylger 97.1 0.0068 2.3E-07 67.9 15.9 149 568-720 42-220 (567)
210 3ma5_A Tetratricopeptide repea 96.9 0.0032 1.1E-07 52.0 8.5 62 554-617 6-68 (100)
211 1zu2_A Mitochondrial import re 96.9 0.0021 7E-08 57.4 7.5 94 502-598 15-132 (158)
212 2kc7_A BFR218_protein; tetratr 96.9 0.0032 1.1E-07 51.6 8.2 63 633-695 7-72 (99)
213 2kc7_A BFR218_protein; tetratr 96.9 0.0045 1.5E-07 50.7 9.0 86 596-692 6-95 (99)
214 2kat_A Uncharacterized protein 96.7 0.0067 2.3E-07 51.4 9.4 61 555-617 19-80 (115)
215 3qww_A SET and MYND domain-con 96.7 0.0056 1.9E-07 65.7 10.2 100 567-695 310-424 (433)
216 1pc2_A Mitochondria fission pr 96.6 0.0062 2.1E-07 53.7 8.2 91 655-771 29-124 (152)
217 3qwp_A SET and MYND domain-con 96.5 0.012 4.1E-07 63.2 11.7 109 561-698 293-416 (429)
218 3ly7_A Transcriptional activat 96.3 0.045 1.5E-06 56.2 13.6 132 586-721 190-339 (372)
219 1wy6_A Hypothetical protein ST 96.3 0.34 1.2E-05 40.8 16.1 140 566-724 18-157 (172)
220 3mkq_A Coatomer beta'-subunit; 96.3 0.099 3.4E-06 61.8 19.0 41 435-477 611-652 (814)
221 3lvg_A Clathrin heavy chain 1; 96.3 0.0026 8.8E-08 66.4 4.3 311 246-612 197-534 (624)
222 3u64_A Protein TP_0956; tetrat 96.0 0.02 6.8E-07 56.2 8.5 87 642-728 179-276 (301)
223 2v5f_A Prolyl 4-hydroxylase su 95.8 0.042 1.4E-06 45.4 9.1 44 656-699 44-87 (104)
224 3mkq_A Coatomer beta'-subunit; 95.6 0.11 3.6E-06 61.5 14.9 141 528-716 633-773 (814)
225 1pc2_A Mitochondria fission pr 95.2 0.19 6.4E-06 44.2 11.3 94 571-697 14-110 (152)
226 3bee_A Putative YFRE protein; 95.0 0.15 5.1E-06 41.0 9.4 68 624-691 4-76 (93)
227 3mkq_B Coatomer subunit alpha; 94.9 0.54 1.8E-05 42.4 13.4 129 532-684 13-141 (177)
228 1nzn_A CGI-135 protein, fissio 94.6 0.13 4.6E-06 43.4 8.2 68 624-691 33-107 (126)
229 4gns_B Protein CSD3, chitin bi 94.5 0.11 3.8E-06 59.0 10.0 54 665-718 344-397 (754)
230 1y8m_A FIS1; mitochondria, unk 94.3 0.85 2.9E-05 39.2 12.5 91 655-771 36-130 (144)
231 3mkq_B Coatomer subunit alpha; 94.2 1.4 4.9E-05 39.7 14.6 102 432-550 14-115 (177)
232 2v5f_A Prolyl 4-hydroxylase su 93.5 0.63 2.1E-05 38.1 10.4 63 658-720 5-74 (104)
233 3u64_A Protein TP_0956; tetrat 93.0 1.3 4.4E-05 43.5 13.1 112 536-652 133-266 (301)
234 1wy6_A Hypothetical protein ST 91.7 5.6 0.00019 33.7 13.7 80 536-617 73-152 (172)
235 3lvg_A Clathrin heavy chain 1; 91.3 1.4 4.7E-05 46.5 11.4 406 42-511 52-534 (624)
236 3o48_A Mitochondria fission 1 91.1 0.96 3.3E-05 38.3 8.4 64 657-720 39-106 (134)
237 1nzn_A CGI-135 protein, fissio 90.4 3.2 0.00011 34.9 11.0 89 566-657 12-106 (126)
238 1qsa_A Protein (soluble lytic 88.2 36 0.0012 37.8 27.4 123 569-698 228-355 (618)
239 2wpv_A GET4, UPF0363 protein Y 87.4 25 0.00085 35.1 20.4 166 428-619 38-217 (312)
240 2p58_C Putative type III secre 86.0 6.7 0.00023 31.0 9.2 86 504-594 22-107 (116)
241 2ff4_A Probable regulatory pro 85.1 7.9 0.00027 40.5 12.9 67 660-726 173-244 (388)
242 2uwj_G Type III export protein 84.9 6.3 0.00022 31.1 8.5 86 504-594 21-106 (115)
243 2qx5_A Nucleoporin NIC96; mRNA 84.7 55 0.0019 36.5 21.6 84 460-554 300-386 (661)
244 3ffl_A Anaphase-promoting comp 84.4 6 0.00021 35.0 9.5 28 627-654 123-150 (167)
245 4b4t_P 26S proteasome regulato 82.4 21 0.0007 38.1 14.9 50 366-416 30-84 (445)
246 3ffl_A Anaphase-promoting comp 82.4 5.6 0.00019 35.2 8.5 121 584-718 12-148 (167)
247 4b4t_P 26S proteasome regulato 81.7 58 0.002 34.6 22.9 94 559-652 141-244 (445)
248 1v54_E Cytochrome C oxidase po 81.6 7.6 0.00026 30.9 7.9 63 570-634 25-87 (109)
249 4fhn_B Nucleoporin NUP120; pro 81.5 45 0.0015 40.6 19.3 143 495-645 818-990 (1139)
250 1v54_E Cytochrome C oxidase po 81.1 13 0.00045 29.6 9.1 50 649-698 36-85 (109)
251 3o48_A Mitochondria fission 1 81.0 23 0.00078 30.0 11.3 78 586-696 36-116 (134)
252 2qx5_A Nucleoporin NIC96; mRNA 80.6 44 0.0015 37.4 17.0 80 358-449 300-382 (661)
253 4ady_A RPN2, 26S proteasome re 80.3 95 0.0033 36.2 30.8 147 433-583 500-657 (963)
254 4gns_B Protein CSD3, chitin bi 77.8 12 0.00042 42.5 11.6 25 460-484 254-279 (754)
255 2ff4_A Probable regulatory pro 77.7 13 0.00043 38.9 11.2 69 559-629 175-248 (388)
256 3txn_A 26S proteasome regulato 77.4 68 0.0023 33.2 16.3 162 490-651 20-206 (394)
257 1zbp_A Hypothetical protein VP 77.1 19 0.00067 34.7 11.0 123 565-694 7-136 (273)
258 1y8m_A FIS1; mitochondria, unk 75.8 38 0.0013 29.1 12.0 77 587-696 36-115 (144)
259 4ady_A RPN2, 26S proteasome re 75.0 1.3E+02 0.0045 35.0 32.0 258 397-663 383-666 (963)
260 3lpz_A GET4 (YOR164C homolog); 74.1 77 0.0026 31.8 22.4 165 428-618 40-215 (336)
261 2p58_C Putative type III secre 72.5 26 0.00088 27.8 8.5 61 429-492 46-106 (116)
262 2y69_E Cytochrome C oxidase su 71.8 18 0.0006 30.6 7.9 60 573-634 71-130 (152)
263 2uwj_G Type III export protein 70.7 24 0.00082 27.9 7.9 61 429-492 45-105 (115)
264 3lpz_A GET4 (YOR164C homolog); 70.5 92 0.0032 31.3 23.2 142 433-604 22-181 (336)
265 2y69_E Cytochrome C oxidase su 70.4 32 0.0011 29.1 9.1 55 644-698 74-128 (152)
266 4h7y_A Dual specificity protei 69.7 24 0.00081 30.7 8.6 52 538-589 74-128 (161)
267 4h7y_A Dual specificity protei 69.4 57 0.0019 28.4 11.9 55 468-523 74-128 (161)
268 1wdy_A 2-5A-dependent ribonucl 64.3 1E+02 0.0035 29.5 14.2 88 83-179 7-99 (285)
269 4fhn_B Nucleoporin NUP120; pro 60.9 82 0.0028 38.2 14.7 62 661-722 902-968 (1139)
270 1wdy_A 2-5A-dependent ribonucl 59.9 1.2E+02 0.0042 28.9 14.7 119 49-180 8-133 (285)
271 1zbp_A Hypothetical protein VP 58.8 16 0.00056 35.2 6.3 57 635-691 6-64 (273)
272 3ltj_A Alpharep-4; protein eng 58.6 1.1E+02 0.0036 27.8 18.0 60 522-582 119-178 (201)
273 2wpv_A GET4, UPF0363 protein Y 56.7 1.6E+02 0.0055 29.2 22.1 141 433-603 23-178 (312)
274 3eu9_A Huntingtin-interacting 54.6 1.1E+02 0.0038 28.3 12.1 9 337-345 223-231 (240)
275 3kea_A K1L; tropism, ANK repea 52.9 75 0.0026 31.0 10.7 183 85-285 35-225 (285)
276 3ltm_A Alpha-REP4; protein eng 52.7 1.4E+02 0.0047 27.3 17.5 61 522-583 124-184 (211)
277 1qsa_A Protein (soluble lytic 50.9 2.9E+02 0.01 30.5 33.7 225 469-711 229-469 (618)
278 3ltm_A Alpha-REP4; protein eng 50.4 1.5E+02 0.0051 27.0 17.9 81 521-605 92-172 (211)
279 4b4t_R RPN7, 26S proteasome re 50.2 53 0.0018 34.6 9.4 57 526-582 133-195 (429)
280 4b4t_R RPN7, 26S proteasome re 49.5 54 0.0018 34.6 9.3 61 491-551 133-195 (429)
281 3esl_A Checkpoint serine/threo 47.6 1.7E+02 0.0057 26.8 12.9 101 644-770 62-168 (202)
282 1k1a_A B-cell lymphoma 3-encod 45.8 1.4E+02 0.0048 27.7 11.2 23 52-74 15-37 (241)
283 3ltj_A Alpharep-4; protein eng 44.8 1.7E+02 0.006 26.2 16.5 152 523-685 27-178 (201)
284 2l0z_A Glycoprotein G2; zinc-b 44.0 7.8 0.00027 24.5 0.9 19 842-860 10-29 (42)
285 1k1a_A B-cell lymphoma 3-encod 41.1 2.2E+02 0.0075 26.3 12.5 188 84-284 12-212 (241)
286 3jxi_A Vanilloid receptor-rela 40.2 1.4E+02 0.0048 28.2 10.3 55 255-309 9-72 (260)
287 3eiq_C Programmed cell death p 40.1 1.9E+02 0.0065 29.3 11.1 217 321-541 57-305 (358)
288 3jxi_A Vanilloid receptor-rela 39.5 1.3E+02 0.0044 28.5 9.8 51 155-205 12-71 (260)
289 2lo3_A SAGA-associated factor 37.9 12 0.00041 23.9 1.1 13 817-829 16-28 (44)
290 2zu6_B Programmed cell death p 37.6 1.3E+02 0.0043 29.9 9.2 64 457-521 169-234 (307)
291 3ljn_A Hypothetical protein; a 37.5 2.2E+02 0.0077 28.6 11.8 18 121-138 58-75 (364)
292 3hra_A Ankyrin repeat family p 36.9 2.3E+02 0.0077 25.2 12.2 16 124-139 13-28 (201)
293 4a1g_A Mitotic checkpoint seri 36.6 1.8E+02 0.0061 25.3 8.8 48 677-724 84-133 (152)
294 2k0q_A Putative uncharacterize 36.0 13 0.00043 26.9 1.1 21 837-857 8-28 (74)
295 2y1l_E Darpin-8.4; hydrolase-i 34.8 1.7E+02 0.006 25.3 9.2 121 46-179 14-140 (169)
296 2nsz_A Programmed cell death p 34.5 1.2E+02 0.0041 25.4 7.3 64 427-490 11-79 (129)
297 1n11_A Ankyrin; clathrin, BAND 34.1 4.1E+02 0.014 27.4 17.7 82 49-138 17-102 (437)
298 3kea_A K1L; tropism, ANK repea 33.5 3.3E+02 0.011 26.2 13.1 57 118-179 33-89 (285)
299 2wvi_A Mitotic checkpoint seri 33.3 2.1E+02 0.0074 25.1 8.9 48 677-724 79-128 (164)
300 3mv2_A Coatomer subunit alpha; 33.2 3.7E+02 0.013 26.6 11.8 110 52-176 123-238 (325)
301 1n11_A Ankyrin; clathrin, BAND 32.9 4.3E+02 0.015 27.2 19.9 87 84-179 17-107 (437)
302 3esl_A Checkpoint serine/threo 32.1 3E+02 0.01 25.2 11.0 55 569-624 93-148 (202)
303 3bqo_A Telomeric repeat-bindin 31.9 2E+02 0.007 26.0 8.4 69 642-710 94-169 (211)
304 1ya0_A SMG-7 transcript varian 31.8 77 0.0026 34.1 7.0 49 664-712 158-206 (497)
305 1bpo_A Protein (clathrin); cla 31.4 4.2E+02 0.014 27.9 11.8 129 515-653 352-483 (494)
306 2d2s_A Exocyst complex compone 27.5 2.7E+02 0.0091 26.2 9.2 21 461-481 25-45 (235)
307 3ljn_A Hypothetical protein; a 27.5 3E+02 0.01 27.6 10.7 17 533-549 179-195 (364)
308 2ion_A PDCD4, programmed cell 27.2 1.1E+02 0.0038 26.6 6.0 63 427-489 13-80 (152)
309 3b7b_A Euchromatic histone-lys 26.5 3.7E+02 0.013 24.5 11.0 23 394-416 213-235 (237)
310 2rfa_A Transient receptor pote 25.2 3.9E+02 0.013 24.3 11.0 46 376-421 137-184 (232)
311 2nsz_A Programmed cell death p 24.8 2.1E+02 0.0071 24.0 7.1 65 457-522 10-76 (129)
312 2d2s_A Exocyst complex compone 23.6 2.1E+02 0.0071 27.0 7.6 27 625-651 90-116 (235)
313 3bu8_A Telomeric repeat-bindin 22.9 3.1E+02 0.011 25.2 8.0 41 664-704 120-160 (235)
314 4b4t_S RPN3, 26S proteasome re 22.2 2E+02 0.0069 30.8 7.9 61 590-652 231-296 (523)
315 1oyz_A Hypothetical protein YI 21.5 5.2E+02 0.018 24.5 19.8 244 342-602 27-279 (280)
316 2ion_A PDCD4, programmed cell 21.5 2.5E+02 0.0084 24.3 7.1 64 457-521 12-77 (152)
317 4g8k_A 2-5A-dependent ribonucl 20.8 6E+02 0.02 24.8 18.0 58 47-112 26-86 (337)
318 2zu6_B Programmed cell death p 20.5 6.2E+02 0.021 24.9 12.5 66 427-492 170-240 (307)
319 3b7b_A Euchromatic histone-lys 20.1 4.9E+02 0.017 23.6 12.0 19 120-138 81-99 (237)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.3e-40 Score=381.39 Aligned_cols=476 Identities=9% Similarity=-0.021 Sum_probs=400.0
Q ss_pred CCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHHHHHHHHH
Q 002975 230 SVDLESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWA 309 (861)
Q Consensus 230 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~ 309 (861)
+|....+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..||..++..+..+|.+.|++++|.+++..+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 143 (597)
T 2xpi_A 66 DGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKE 143 (597)
T ss_dssp ----------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred cCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 67788888999999989999999999999999999999999999985 5678899999999999999999999999987
Q ss_pred HHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCC-------------------CcccHHHHHHHHHhcCCChH
Q 002975 310 IRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDH-------------------NVMSWTAIITGYVQSGGRDK 370 (861)
Q Consensus 310 ~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~ 370 (861)
... .++..+++.++.+|.++|+ +++|.++|+++... +..+|+.++.+|.+.|+ ++
T Consensus 144 ~~~--~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~ 217 (597)
T 2xpi_A 144 DLY--NRSSACRYLAAFCLVKLYD---WQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN-FD 217 (597)
T ss_dssp CGG--GTCHHHHHHHHHHHHHTTC---HHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC-HH
T ss_pred hcc--ccchhHHHHHHHHHHHHhh---HHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC-HH
Confidence 543 6788899999999999988 99999999965433 37899999999999999 99
Q ss_pred HHHHHHHHHhhCCCCCCh-hhHHHHHHHhcccCChHH--HHHH-HHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHH
Q 002975 371 EAVKLFSDMIQGQVAPNH-FTFASVLKACGNLLDSNV--AEQV-YTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAF 446 (861)
Q Consensus 371 ~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~--a~~i-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 446 (861)
+|+++|++|.+. .|+. ..+..+...+...+..+. +..+ +..+...+......+++.++.+|.+.|++++|.++|
T Consensus 218 ~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 218 RAKECYKEALMV--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 999999999875 3543 344444433333322221 1111 444444555555667777889999999999999999
Q ss_pred HhcCC--CCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCch
Q 002975 447 ESLFE--KNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNH 524 (861)
Q Consensus 447 ~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~ 524 (861)
+++.+ ++..+|+.++.+|.+.|++++|+++|+++...+ +.+..++..++.++.+.|+.++|.+++..+.+.. +.+.
T Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 373 (597)
T 2xpi_A 296 SSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKA 373 (597)
T ss_dssp HTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSH
T ss_pred HHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccH
Confidence 99987 788999999999999999999999999999765 3477889999999999999999999999999765 6688
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Q 002975 525 CIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACS 601 (861)
Q Consensus 525 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 601 (861)
.+++.++.+|.++|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 9999999999999999999999998863 467899999999999999999999999999853 346789999999999
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHhC
Q 002975 602 HAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM-------PLSAD--VLVWRTFLGACRVHG 672 (861)
Q Consensus 602 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~-------~~~p~--~~~~~~ll~~~~~~g 672 (861)
+.|++++|.++|+.+.+.. +.+..+|..++.+|.+.|++++|+++|+++ +..|+ ..+|..++.+|..+|
T Consensus 453 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 9999999999999998542 336788999999999999999999999987 34777 789999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 673 DTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 673 ~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
++++|+..++++++++|+++.+|..|+++|...|+|++|.+.++++.+
T Consensus 531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998876
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.9e-40 Score=379.48 Aligned_cols=496 Identities=9% Similarity=-0.037 Sum_probs=332.2
Q ss_pred HhcCCChHHHHHHHHhcCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhhhhh
Q 002975 123 YSKCGDLNEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHII 202 (861)
Q Consensus 123 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 202 (861)
+.+.|.+..+...|+.++. +++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|...|+++.|..+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSL-SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccccCccCCCCCccccchH-HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 4456777778888888877 7888999999999999999999999999985 567888999999999999999999999
Q ss_pred hhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCCC-------------------CcchHHHHHHHHHhcCC
Q 002975 203 YGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEK-------------------NTVGWTLMITRCTQLGC 263 (861)
Q Consensus 203 ~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~~-------------------~~~~~~~li~~~~~~g~ 263 (861)
++.+.. .+++..+++.++.+|.+ +|++++|.++|+++... +..+|+.++.+|.+.|+
T Consensus 140 ~~~~~~---~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 140 LTKEDL---YNRSSACRYLAAFCLVK-LYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHTCG---GGTCHHHHHHHHHHHHH-TTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhc---cccchhHHHHHHHHHHH-HhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 998875 46789999999999999 99999999999964433 47899999999999999
Q ss_pred chHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHHH---HH-HHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHH
Q 002975 264 PRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGK---QL-HSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDD 339 (861)
Q Consensus 264 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~---~i-~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~ 339 (861)
+++|+++|++|.+.+ |+..+....+..+.......... .+ +..+...+......+++.++.+|.++|+ +++
T Consensus 216 ~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~ 290 (597)
T 2xpi_A 216 FDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDE---LRR 290 (597)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHH---HHH
T ss_pred HHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcch---HHH
Confidence 999999999998753 54443322222222211111111 11 2223333333334455555666666655 666
Q ss_pred HHHHHhccCC--CCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHc
Q 002975 340 SRKVFDRMLD--HNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKR 417 (861)
Q Consensus 340 A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 417 (861)
|.++|+++.+ ++..+|+.++..|.+.|+ +++|+++|++|.+.+
T Consensus 291 A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~---------------------------------- 335 (597)
T 2xpi_A 291 AEDYLSSINGLEKSSDLLLCKADTLFVRSR-FIDVLAITTKILEID---------------------------------- 335 (597)
T ss_dssp HHHHHHTSTTGGGCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC----------------------------------
T ss_pred HHHHHHHhhcCCchHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHcC----------------------------------
Confidence 6666666654 455556666666666665 666666655554422
Q ss_pred CCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcC---CCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHH
Q 002975 418 GRALDDCVGNSLISMYARSGRMEDARKAFESLF---EKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFAS 494 (861)
Q Consensus 418 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 494 (861)
+.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++..|.+.|++++|.++|+++.
T Consensus 336 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------- 400 (597)
T 2xpi_A 336 --PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSS------------- 400 (597)
T ss_dssp --TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------
T ss_pred --cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH-------------
Confidence 1122333333344444444444444443331 1223344444444444444444444444443
Q ss_pred HHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCCh
Q 002975 495 LLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFA 571 (861)
Q Consensus 495 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 571 (861)
+.. +.+..+|+.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++
T Consensus 401 ----------------------~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 457 (597)
T 2xpi_A 401 ----------------------TMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNI 457 (597)
T ss_dssp ----------------------HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCH
T ss_pred ----------------------HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCH
Confidence 322 33455666677777777777777777766542 3667778888888888888
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc---CCCCC--hhHHHHHHHHhhhcCCHHHHH
Q 002975 572 ARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEH---GIVQR--MEHYACMVDLLGRSGSLTEAL 646 (861)
Q Consensus 572 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~~~~l~~~~~r~g~~~eA~ 646 (861)
++|+++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.
T Consensus 458 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 536 (597)
T 2xpi_A 458 LLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAI 536 (597)
T ss_dssp HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHH
Confidence 88888888887743 2356778888888888888888888888876432 56776 678888888888888888888
Q ss_pred HHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 002975 647 EFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS 704 (861)
Q Consensus 647 ~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~ 704 (861)
+.++++. .+.+..+|..++.+|...|+.++|...++++++++|+++.++..|+++|..
T Consensus 537 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 537 DALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 8888763 344789999999999999999999999999999999999999999998854
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=6.5e-24 Score=231.48 Aligned_cols=348 Identities=14% Similarity=0.146 Sum_probs=237.2
Q ss_pred HHHhcCCChHHHHHHHHHHhhCCCCCCh-hhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCH
Q 002975 361 GYVQSGGRDKEAVKLFSDMIQGQVAPNH-FTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRM 439 (861)
Q Consensus 361 ~~~~~g~~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 439 (861)
.+.+.|+ +++|++.+.++.+. .|+. ..+..+...+...|+++.|...+...++.. +.+...+..+...|.+.|++
T Consensus 8 ~~~~~g~-~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 8 REYQAGD-FEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHCCC-HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 3445566 77777777666553 3433 334444445566677777777776666653 44556677777777777777
Q ss_pred HHHHHHHHhcC--CC-CeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCC-HHHHHHHHHHhhcccchHHHHHHHHHH
Q 002975 440 EDARKAFESLF--EK-NLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTS-AYTFASLLSGASSIGAIGKGEQIHARI 515 (861)
Q Consensus 440 ~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~ 515 (861)
++|.+.|+++. .| +..+|..+..++.+.|++++|++.|+++.... |+ ...+..+...+...|++++|.+.+..+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777663 23 33467777777777777777777777776543 33 344555666667777777777777777
Q ss_pred HHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--C-CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hH
Q 002975 516 IKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED--R-NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GI 591 (861)
Q Consensus 516 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 591 (861)
.+.. +.+..++..+...|.+.|++++|...|+++.+ | +...|..+...+...|++++|+..|++..+ ..|+ ..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCHH
Confidence 7654 44566777777777777777777777777652 2 345677777777777777777777777776 3454 55
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 002975 592 TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGAC 668 (861)
Q Consensus 592 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~ 668 (861)
++..+..++...|++++|...|+.+.+ +.| +...|..+..+|.+.|++++|++.++++. .+.+..+|..+...+
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 677777777777777777777777763 233 34567777777777777777777777663 344666777777777
Q ss_pred HHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 669 RVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 669 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
...|+.+.|+..++++++++|+++.++..++.+|...|++++|.+.++++.+
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777777777777777777777777777777777777777777777776654
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=2.6e-26 Score=254.50 Aligned_cols=184 Identities=18% Similarity=0.249 Sum_probs=172.6
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhccc---------chHHHHHHHHHHHHhCCCCchh
Q 002975 455 VSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIG---------AIGKGEQIHARIIKSGFESNHC 525 (861)
Q Consensus 455 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~---------~~~~a~~~~~~~~~~~~~~~~~ 525 (861)
..++.+|++|++.|+.++|+++|++|.+.|++||..||+++|.+|++.+ .++.|.++|+.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 3578889999999999999999999999999999999999999998654 4788999999999999999999
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhcc----CCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Q 002975 526 IYNALISMYSRCANVEAAFQVFKEME----DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACS 601 (861)
Q Consensus 526 ~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 601 (861)
+|++||++|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++|+.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999997 48999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhc
Q 002975 602 HAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRS 639 (861)
Q Consensus 602 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~ 639 (861)
+.|++++|.++|++|. +.+..|+..+|+.+++.+.+.
T Consensus 187 ~~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLR-DLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHH-HHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHH-HhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999998 779999999999999988764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=1.3e-23 Score=229.16 Aligned_cols=362 Identities=11% Similarity=0.063 Sum_probs=274.0
Q ss_pred HHHHHHHHhccCC--C-CcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHH
Q 002975 337 VDDSRKVFDRMLD--H-NVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTH 413 (861)
Q Consensus 337 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 413 (861)
+++|.+.++.+.. | +...+..+...+.+.|+ .++|...++..... -+.+..++..+..++.+.|++++|.+.++.
T Consensus 15 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 92 (388)
T 1w3b_A 15 FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRR-LDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQEAIEHYRH 92 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555555544421 2 23334444445555555 66666666555543 233455666666666666666666666666
Q ss_pred HHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcC--CC-CeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHH
Q 002975 414 AVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLF--EK-NLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAY 490 (861)
Q Consensus 414 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 490 (861)
+.+.. +.+...+..+..+|.+.|++++|.+.|+++. .| +...+..+...+...|++++|.+.|+++.... +-+..
T Consensus 93 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 170 (388)
T 1w3b_A 93 ALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAV 170 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHH
Confidence 66543 3334456667777777777777777777663 23 33456667777777888888888888877652 33466
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--C-CchHHHHHHHHHHh
Q 002975 491 TFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED--R-NVISWTSMITGFAK 567 (861)
Q Consensus 491 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~ 567 (861)
++..+...+...|++++|...++.+++.+ +.+...+..+...|...|++++|...|++..+ | +..+|..+...|..
T Consensus 171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 249 (388)
T 1w3b_A 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHH
Confidence 77788888888888888888888888765 55677888899999999999999999987762 3 56889999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHH
Q 002975 568 HGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEAL 646 (861)
Q Consensus 568 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~ 646 (861)
.|++++|+..|+++.+ ..|+ ..++..+..++...|++++|...|+.+.+. .+.+...+..+..++.+.|++++|.
T Consensus 250 ~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~ 325 (388)
T 1w3b_A 250 QGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAV 325 (388)
T ss_dssp TTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999 4565 668899999999999999999999999854 2456788999999999999999999
Q ss_pred HHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCC
Q 002975 647 EFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGH 707 (861)
Q Consensus 647 ~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~ 707 (861)
+.++++. ..| +..+|..++.++...|+.++|+..++++++++|+++.+|..++.+|...|+
T Consensus 326 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999874 334 578999999999999999999999999999999999999999999988774
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=2.1e-26 Score=255.24 Aligned_cols=213 Identities=12% Similarity=0.094 Sum_probs=172.5
Q ss_pred hHHHHHHHHHHhhCCCCCC-hhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHH
Q 002975 369 DKEAVKLFSDMIQGQVAPN-HFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFE 447 (861)
Q Consensus 369 ~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 447 (861)
...+..+.+++.+.++.+. ...++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 6 ~s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~----- 80 (501)
T 4g26_A 6 ASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES----- 80 (501)
T ss_dssp ------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-----
T ss_pred cchHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-----
Confidence 3455566677766666543 3457777888888888888888888888888888888888888877776653221
Q ss_pred hcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHH
Q 002975 448 SLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIY 527 (861)
Q Consensus 448 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 527 (861)
.+.+..++|.++|++|...|+.||..||+++|.+|++.|++++|.++++.|.+.|+.||..+|
T Consensus 81 -----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty 143 (501)
T 4g26_A 81 -----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY 143 (501)
T ss_dssp -----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred -----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccee
Confidence 224457889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHhcc----CCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 002975 528 NALISMYSRCANVEAAFQVFKEME----DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHA 603 (861)
Q Consensus 528 ~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 603 (861)
++||.+|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||..++..|+..
T Consensus 144 n~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 144 GPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999997 5899999999999999999999999999999999999999999999988764
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=8.7e-22 Score=219.29 Aligned_cols=322 Identities=11% Similarity=0.087 Sum_probs=234.7
Q ss_pred CcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHH
Q 002975 351 NVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLI 430 (861)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 430 (861)
+...|..+...|.+.|+ +++|+.+|+++.+. .+.+..++..+..++...|++++|...+..+++.+ +.+..++..+.
T Consensus 25 ~~~~~~~~~~~~~~~g~-~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQ-LADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 34567777777777777 77777777777653 12345555556666666666666666666665553 23344445555
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCCe------ehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccc
Q 002975 431 SMYARSGRMEDARKAFESLFEKNL------VSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGA 504 (861)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 504 (861)
.+|.+.|++++|.+.|+++.+.++ ..|..++..+... .+..+...+...|+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCC
Confidence 555555555555555555432221 2333333221111 11222344677888
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 002975 505 IGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKM 581 (861)
Q Consensus 505 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 581 (861)
+++|...+..+.+.. +.+..++..+..+|.+.|++++|.++|+++.+ .+..+|..++..|...|++++|+..|+++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888888888765 56788899999999999999999999998863 56789999999999999999999999999
Q ss_pred HHcCCCCChH-HHHHH------------HHHHHhcCCHHHHHHHHHHHHhhcCCCCC--hhHHHHHHHHhhhcCCHHHHH
Q 002975 582 LADGIKPNGI-TYIAV------------LSACSHAGLISEGWKHFRSMYDEHGIVQR--MEHYACMVDLLGRSGSLTEAL 646 (861)
Q Consensus 582 ~~~g~~p~~~-t~~~l------------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~r~g~~~eA~ 646 (861)
.+ ..|+.. .+..+ ..+|.+.|++++|..+|+.+.+...-.|. ..+|..++.++.+.|++++|+
T Consensus 238 ~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 238 LK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp HH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 98 456644 34333 78899999999999999999853322222 458899999999999999999
Q ss_pred HHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 002975 647 EFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNL 701 (861)
Q Consensus 647 ~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 701 (861)
+.++++. .+.+..+|..++.+|...|+++.|+..++++++++|+++.++..|+.+
T Consensus 316 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 316 RVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 9999873 344688999999999999999999999999999999999999999943
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=4.9e-21 Score=217.11 Aligned_cols=436 Identities=8% Similarity=-0.051 Sum_probs=247.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHh
Q 002975 251 WTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAK 330 (861)
Q Consensus 251 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~ 330 (861)
|......+.+.|++++|+..|+++.+.. ||..++..+..++...|+++.|.+.+..+++.. +.+...+..+..+|.+
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 4444555666666666666666666543 555666666666666666666666666666553 2233455556666666
Q ss_pred CCCCCCHHHHHHHHhccCCC---CcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHH
Q 002975 331 CTVDGSVDDSRKVFDRMLDH---NVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVA 407 (861)
Q Consensus 331 ~g~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 407 (861)
.|+ +++|...|+++... +......++..+..... ...+.+.+..+...+..|+...+..-.............
T Consensus 86 ~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 86 LGK---FADAMFDLSVLSLNGDFNDASIEPMLERNLNKQA-MSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp TTC---HHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHH-HHHHTTC---------------------------CCCCH
T ss_pred Hhh---HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 555 66666666655221 22233333333332222 222222222222211112111111100000000011001
Q ss_pred HHHHHHHHHcCC---------CCCcchhhHHHHHHHH---cCCHHHHHHHHHhcCC----------------C-CeehHH
Q 002975 408 EQVYTHAVKRGR---------ALDDCVGNSLISMYAR---SGRMEDARKAFESLFE----------------K-NLVSYN 458 (861)
Q Consensus 408 ~~i~~~~~~~g~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~ 458 (861)
..+...+..... +.+...+..+...+.. .|++++|...|+++.+ + +...|.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 111111110000 1112222222232332 6667777776665533 1 234566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC
Q 002975 459 TMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCA 538 (861)
Q Consensus 459 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 538 (861)
.+...+...|++++|+..|+++..... +..++..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 677777777777777777777776543 36667777777777777777777777776654 445667777777777888
Q ss_pred CHHHHHHHHHhcc---CCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHH
Q 002975 539 NVEAAFQVFKEME---DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFR 614 (861)
Q Consensus 539 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~ 614 (861)
++++|...|+++. ..+...|..+...|...|++++|+..|+++.+. .| +..++..+...+...|++++|..+|+
T Consensus 319 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8888887777664 234567777777777788888888888877773 33 35567777777777888888888777
Q ss_pred HHHhhcCCCCC----hhHHHHHHHHhhh---cCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 002975 615 SMYDEHGIVQR----MEHYACMVDLLGR---SGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMIL 685 (861)
Q Consensus 615 ~m~~~~~~~p~----~~~~~~l~~~~~r---~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 685 (861)
.+.+...-.++ ...+..+...+.+ .|++++|.+.++++. .+.+..+|..+...+...|+.+.|...+++++
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 77643332332 3367777777777 788888877777652 23356677777777778888888888888888
Q ss_pred ccCCCCCchHHHH
Q 002975 686 EQDPQDPAAHILL 698 (861)
Q Consensus 686 ~~~p~~~~~~~~L 698 (861)
+++|+++..+..+
T Consensus 477 ~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 477 DLARTMEEKLQAI 489 (514)
T ss_dssp HHCSSHHHHHHHH
T ss_pred HhccccHHHHHHH
Confidence 8888776666555
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.9e-20 Score=212.21 Aligned_cols=389 Identities=11% Similarity=-0.013 Sum_probs=311.9
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHhccC--CCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 002975 320 VGCSLVDMYAKCTVDGSVDDSRKVFDRML--DHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKA 397 (861)
Q Consensus 320 ~~~~li~~y~~~g~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 397 (861)
.+..+...|.+.|+ +++|...|+++. .|+...|..+...|.+.|+ +++|+..|+++.+.. +.+..++..+..+
T Consensus 8 ~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 8 ALKDKGNQFFRNKK---YDDAIKYYNWALELKEDPVFYSNLSACYVSVGD-LKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHTSC---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc---HHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhh-HHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 45566678888777 999999999884 3678889999999999999 999999999998753 2355688888899
Q ss_pred hcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHH------------------------------
Q 002975 398 CGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFE------------------------------ 447 (861)
Q Consensus 398 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~------------------------------ 447 (861)
+...|++++|...+..+.+.+ +++......++..+.+......+.+.+.
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999998876 3444444555554444333322222221
Q ss_pred --------hcCC---------C-CeehHHHHHHHHHh---cCChhHHHHHHHHHhh-----cCCC--------CCHHHHH
Q 002975 448 --------SLFE---------K-NLVSYNTMVDAYAK---NLNSEKAFELLHEIED-----TGVG--------TSAYTFA 493 (861)
Q Consensus 448 --------~~~~---------~-~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~-----~g~~--------p~~~t~~ 493 (861)
.... + +...+..+...+.. .|++++|+.+|+++.. .... .+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 1100 0 12233344444444 8999999999999987 3112 2345777
Q ss_pred HHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCC
Q 002975 494 SLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGF 570 (861)
Q Consensus 494 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 570 (861)
.+...+...|++++|...+..+.+.... ...+..+...|...|++++|...|+.+.+ .+...|..+...|...|+
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC
Confidence 8888999999999999999999987633 88899999999999999999999998764 466789999999999999
Q ss_pred hHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHH
Q 002975 571 AARALEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFI 649 (861)
Q Consensus 571 ~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~ 649 (861)
+++|+..|+++.+. .| +..++..+...+...|++++|..+|+.+.+.. +.+...+..+...|.+.|++++|.+.+
T Consensus 320 ~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 320 YDQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TTHHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999984 44 46788889999999999999999999998543 234577888999999999999999999
Q ss_pred HhCC----CCCC----HHHHHHHHHHHHH---hCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 650 RSMP----LSAD----VLVWRTFLGACRV---HGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 650 ~~~~----~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
+++. ..++ ..+|..+...+.. .|+++.|+..++++++++|+++.++..++.+|...|++++|.+.++..
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8862 2232 4488999999999 999999999999999999999999999999999999999999999988
Q ss_pred Hh
Q 002975 719 KE 720 (861)
Q Consensus 719 ~~ 720 (861)
.+
T Consensus 476 ~~ 477 (514)
T 2gw1_A 476 AD 477 (514)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.86 E-value=1.8e-19 Score=200.49 Aligned_cols=365 Identities=12% Similarity=0.036 Sum_probs=235.9
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCC---CCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhH
Q 002975 315 ALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLD---HNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTF 391 (861)
Q Consensus 315 ~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~ 391 (861)
+.+...+..+...|.+.|+ +++|..+|+++.. .+...|..+...|...|+ +++|+..|+++.+.+ +.+..++
T Consensus 23 p~~~~~~~~~~~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~-p~~~~~~ 97 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQ---LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGK-SKAALPDLTKVIQLK-MDFTAAR 97 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcC-CCcHHHH
Confidence 3456778889999999888 9999999998743 467889999999999999 999999999998753 2356788
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHHcCCCCCc---chhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcC
Q 002975 392 ASVLKACGNLLDSNVAEQVYTHAVKRGRALDD---CVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNL 468 (861)
Q Consensus 392 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 468 (861)
..+...+...|++++|.+.+..+.+.. +.+. ..+..++..+... .+..+...+.+.|
T Consensus 98 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 98 LQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSG 157 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcC
Confidence 889999999999999999999998764 2333 4555554442211 1122233444455
Q ss_pred ChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHH
Q 002975 469 NSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFK 548 (861)
Q Consensus 469 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 548 (861)
++++|+..|+++.... +.+..++..+..++...|++++|.+.+..+.+.. +.+..++..+..+|.+.|++++|...|+
T Consensus 158 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555555432 2344455555555555555555555555555443 3445556666666666666666666666
Q ss_pred hccC--C-CchHHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCC-----hHHHHHHHHHHHhcCCHHH
Q 002975 549 EMED--R-NVISWTSM------------ITGFAKHGFAARALEIFYKMLADGIKPN-----GITYIAVLSACSHAGLISE 608 (861)
Q Consensus 549 ~~~~--~-~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~ 608 (861)
++.+ | +...|..+ ...|...|++++|+..|+++.+ ..|+ ...+..+..++.+.|++++
T Consensus 236 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 236 ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 5542 2 22333333 6667777777777777777776 3444 2356666777777777777
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH------------HHHhC--
Q 002975 609 GWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM-PLSA-DVLVWRTFLGA------------CRVHG-- 672 (861)
Q Consensus 609 a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~------------~~~~g-- 672 (861)
|..+++.+.+.. +.+...|..+..+|...|++++|.+.++++ ...| +..+|..+..+ |...|
T Consensus 314 A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~ 391 (450)
T 2y4t_A 314 AIRVCSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVK 391 (450)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSS
T ss_pred HHHHHHHHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCC
Confidence 777777766321 224566777777777777777777777765 2344 35555555532 33333
Q ss_pred ---CHHHHHHHHHH-HhccCCCCCc----------hHHHHHHHHHHcCChhH
Q 002975 673 ---DTELGKHAAEM-ILEQDPQDPA----------AHILLSNLYASAGHWEY 710 (861)
Q Consensus 673 ---~~~~a~~~~~~-~~~~~p~~~~----------~~~~L~~~y~~~g~~~~ 710 (861)
+.+++.+.+++ +++.+|++.. .+..++.+|...|+.+.
T Consensus 392 ~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 392 RNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp TTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 56677888876 7888887543 23345555555555444
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.85 E-value=1e-18 Score=199.17 Aligned_cols=424 Identities=12% Similarity=0.009 Sum_probs=212.2
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHH
Q 002975 249 VGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMY 328 (861)
Q Consensus 249 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 328 (861)
..|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|.+.+..+++.. +.+...+..+...|
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 455666777777888888888888777643 2244556666666677777777777777766654 22345556666667
Q ss_pred HhCCCCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHH
Q 002975 329 AKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAE 408 (861)
Q Consensus 329 ~~~g~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 408 (861)
...|+ +++|...|+.+ ..+....+..+..+...+. ..+|+..++++.... |
T Consensus 104 ~~~g~---~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~l~~~--~---------------------- 154 (537)
T 3fp2_A 104 ESLGN---FTDAMFDLSVL-SLNGDFDGASIEPMLERNL-NKQAMKVLNENLSKD--E---------------------- 154 (537)
T ss_dssp HHHTC---HHHHHHHHHHH-C-----------CHHHHHH-HHHHHHHHHHHCC---------------------------
T ss_pred HHcCC---HHHHHHHHHHH-hcCCCCChHHHHHHHHHHH-HHHHHHHHHHHHHhC--c----------------------
Confidence 66666 77777766533 2222222223334444444 566666666664421 0
Q ss_pred HHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCee---hHHHHHHHHHh--------cCChhHHHHHH
Q 002975 409 QVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLV---SYNTMVDAYAK--------NLNSEKAFELL 477 (861)
Q Consensus 409 ~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~l~ 477 (861)
+..+........+..|....+.+.+...+......+.. .+..+...+.. .|++++|+.+|
T Consensus 155 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~ 225 (537)
T 3fp2_A 155 ---------GRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMY 225 (537)
T ss_dssp -------------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHH
T ss_pred ---------cccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 00001111122223333333444444333333322221 11111111111 12445555555
Q ss_pred HHHhhcCCCCC--------HHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHh
Q 002975 478 HEIEDTGVGTS--------AYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKE 549 (861)
Q Consensus 478 ~~m~~~g~~p~--------~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 549 (861)
+++.... |+ ..++..+...+...|++++|...+..+.+.. |+...+..+...|...|++++|.+.|++
T Consensus 226 ~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 301 (537)
T 3fp2_A 226 HSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQK 301 (537)
T ss_dssp HHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHH
T ss_pred HHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 5554322 22 1123333444445555555555555555542 2244555555555555555555555554
Q ss_pred ccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC
Q 002975 550 MED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR 625 (861)
Q Consensus 550 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 625 (861)
+.+ .+..+|..+...|...|++++|+..|+++.+. .|+ ...+..+...+...|++++|..+|+.+.+.. +.+
T Consensus 302 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~ 377 (537)
T 3fp2_A 302 AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTL 377 (537)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred HhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC
Confidence 441 23445555555555555555555555555552 232 3455555555555555555555555555321 122
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHHhCC----CC----CCHHHHHHHHHHHHHh----------CCHHHHHHHHHHHhcc
Q 002975 626 MEHYACMVDLLGRSGSLTEALEFIRSMP----LS----ADVLVWRTFLGACRVH----------GDTELGKHAAEMILEQ 687 (861)
Q Consensus 626 ~~~~~~l~~~~~r~g~~~eA~~~~~~~~----~~----p~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~ 687 (861)
...+..+...+.+.|++++|.+.++++. .. .....+..+...+... |+++.|+..++++++.
T Consensus 378 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 457 (537)
T 3fp2_A 378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457 (537)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence 3445555555555566666555555531 01 1112233334445555 6666677777777766
Q ss_pred CCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 688 DPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 688 ~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+|+++.++..++.+|...|++++|.+.++...+
T Consensus 458 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 458 DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 676666666677777777777777666666554
No 12
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=7.5e-16 Score=179.63 Aligned_cols=549 Identities=12% Similarity=0.090 Sum_probs=359.1
Q ss_pred CCCCcchHHHHHHHHhcCCChHHHHHHHHhc---------------CCCCCce----------------------eHHHH
Q 002975 109 LEPNSVILNSLISLYSKCGDLNEANKIFKSM---------------GNKRDIV----------------------SWSSM 151 (861)
Q Consensus 109 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~---------------~~~~~~~----------------------~~~~l 151 (861)
..-|+.+....|.+.++.|++.+..++.++- +- +|.. .....
T Consensus 721 ~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl-~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ 799 (1630)
T 1xi4_A 721 FSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL-TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKY 799 (1630)
T ss_pred ccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCC-CCCCCceeeccccccHHHHHHHHHhcCchhH
Confidence 3457788888999999999988888777542 11 1211 01223
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCC-----------CCcccHHHHHHHhcCCcchhhhhhhhhhhhhccCCCCchhHHH
Q 002975 152 ISSYVNRGKQVDAIHMFVEMLELGFC-----------PNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGC 220 (861)
Q Consensus 152 i~~~~~~g~~~~A~~~~~~m~~~g~~-----------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 220 (861)
|.+|++.-++..+-.+...+...+.. .+......++..+-+.+++.....+++.-+..| ..|+.++|
T Consensus 800 ie~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g--~~~~~~hn 877 (1630)
T 1xi4_A 800 IEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG--CEEPATHN 877 (1630)
T ss_pred HHHHHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCHHHHH
Confidence 44444443333332222222221111 112224445555555566666667777778888 77899999
Q ss_pred HHHHHhhhCCCCHHHHH------------HHHhcCCCCCcch----------HHHHHHHHHhcCCchHHHHHH-------
Q 002975 221 ALIDMFVKGSVDLESAY------------KVFDKMTEKNTVG----------WTLMITRCTQLGCPRDAIRLF------- 271 (861)
Q Consensus 221 ~l~~~~~~~~g~~~~A~------------~~f~~~~~~~~~~----------~~~li~~~~~~g~~~~A~~l~------- 271 (861)
+|...|....++.+.-+ +..++ +|... -.-||....+++.++..-+.+
T Consensus 878 alakiyid~n~npe~fL~~n~~yd~~~vgkyce~---rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~ 954 (1630)
T 1xi4_A 878 ALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEK---RDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPE 954 (1630)
T ss_pred HHHHHHhccCCCHHHHhhccCcccHHHHHHHHHh---cCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHH
Confidence 99999998444444411 11111 22111 223444444444433222211
Q ss_pred -----------------HHHHHCC--CCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhC--CCCccchHHHHHHHHHh
Q 002975 272 -----------------LDMILSG--FLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTG--LALDVCVGCSLVDMYAK 330 (861)
Q Consensus 272 -----------------~~m~~~g--~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g--~~~~~~~~~~li~~y~~ 330 (861)
++-.... -.-|+.-....++++...|...++.++++.++..+ +..+....+.|+.+..+
T Consensus 955 lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIk 1034 (1630)
T 1xi4_A 955 LWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIK 1034 (1630)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHH
Confidence 1111111 01122233556677777888888888888877332 12344556667766666
Q ss_pred CCCCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHH
Q 002975 331 CTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQV 410 (861)
Q Consensus 331 ~g~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i 410 (861)
. + .........+...-+ ...+...+...|. +++|..+|++.. -.....+.++. ..+++++|.++
T Consensus 1035 a-D---~~Rv~eyI~kLd~~d---~~eIA~Iai~lgl-yEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~ 1098 (1630)
T 1xi4_A 1035 A-D---RTRVMEYINRLDNYD---APDIANIAISNEL-FEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEF 1098 (1630)
T ss_pred h-C---hhhHHHHHHHhhhcc---HHHHHHHHHhCCC-HHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHH
Confidence 5 2 333333333332112 3446667777888 899999988852 11111222222 66778888888
Q ss_pred HHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHH
Q 002975 411 YTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAY 490 (861)
Q Consensus 411 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 490 (861)
...+ .+..+|..+..++.+.|++++|.+.|.+. .|...|..++..+.+.|++++|++.|...++.. ++..
T Consensus 1099 Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~ 1168 (1630)
T 1xi4_A 1099 AERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESY 1168 (1630)
T ss_pred HHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--cccc
Confidence 7754 34678888999999999999999999764 667778888999999999999999998777654 3333
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCC
Q 002975 491 TFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGF 570 (861)
Q Consensus 491 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 570 (861)
..+.+..+|++.++++....+. + .++...+..+.+.|...|++++|...|... ..|..+...|.+.|+
T Consensus 1169 Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge 1236 (1630)
T 1xi4_A 1169 VETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGE 1236 (1630)
T ss_pred ccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCC
Confidence 3335888888888887544442 2 345566667889999999999999999985 488899999999999
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHH
Q 002975 571 AARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIR 650 (861)
Q Consensus 571 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~ 650 (861)
+++|++.+++. -+..+|..+..+|...|.+..|...... +.-+.+.+..++..|.+.|.+++|+.+++
T Consensus 1237 ~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE 1304 (1630)
T 1xi4_A 1237 YQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLE 1304 (1630)
T ss_pred HHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999998876 3457888888899999998888876543 44566778899999999999999999998
Q ss_pred hCC-CCC-CHHHHHHHHHHHHHh--CCHHHHHHHHHHHhccCC-----CCCchHHHHHHHHHHcCChhHHHH
Q 002975 651 SMP-LSA-DVLVWRTFLGACRVH--GDTELGKHAAEMILEQDP-----QDPAAHILLSNLYASAGHWEYVAN 713 (861)
Q Consensus 651 ~~~-~~p-~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~p-----~~~~~~~~L~~~y~~~g~~~~a~~ 713 (861)
... .++ ....|.-|.-++.+. ++..++.+.|.....+.| ++...|..+.-+|.+.|.|+.|..
T Consensus 1305 ~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1305 AALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 763 444 345676666666655 477778888888888777 778889999999999999999984
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=7.7e-18 Score=191.97 Aligned_cols=236 Identities=10% Similarity=-0.033 Sum_probs=189.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 002975 457 YNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSR 536 (861)
Q Consensus 457 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 536 (861)
|..+...+...|++++|+..|++.... .|+..++..+...+...|++++|...+..+.+.. +.+..++..+...|..
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHh
Confidence 444556677778888888888888765 4557778888888888899999999988888775 5567889999999999
Q ss_pred cCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHH
Q 002975 537 CANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKH 612 (861)
Q Consensus 537 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 612 (861)
.|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+. .|+ ...+..+...+...|++++|...
T Consensus 323 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999998763 45678999999999999999999999999985 454 66888899999999999999999
Q ss_pred HHHHHhhcCCCC----ChhHHHHHHHHhhhc----------CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHH
Q 002975 613 FRSMYDEHGIVQ----RMEHYACMVDLLGRS----------GSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTEL 676 (861)
Q Consensus 613 ~~~m~~~~~~~p----~~~~~~~l~~~~~r~----------g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~ 676 (861)
|+.+.+...-.+ ....+..+...|.+. |++++|.+.++++. .+.+..+|..+...+...|+.+.
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence 999874332112 223344556777777 99999999999873 34467889999999999999999
Q ss_pred HHHHHHHHhccCCCCCchHHH
Q 002975 677 GKHAAEMILEQDPQDPAAHIL 697 (861)
Q Consensus 677 a~~~~~~~~~~~p~~~~~~~~ 697 (861)
|...++++++++|++......
T Consensus 481 A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 481 AIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHHHHHHHC--CHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHH
Confidence 999999999999988776553
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=1e-14 Score=170.35 Aligned_cols=331 Identities=9% Similarity=0.039 Sum_probs=226.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHhccCCC------CcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 002975 323 SLVDMYAKCTVDGSVDDSRKVFDRMLDH------NVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLK 396 (861)
Q Consensus 323 ~li~~y~~~g~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 396 (861)
..+..|...|. ..+|.+++++..-. +...-|.++.+..+. + ..+..+...+.. ......+..
T Consensus 990 ~~vKaf~~agl---p~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D-~~Rv~eyI~kLd-------~~d~~eIA~ 1057 (1630)
T 1xi4_A 990 VTVKAFMTADL---PNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-D-RTRVMEYINRLD-------NYDAPDIAN 1057 (1630)
T ss_pred HHHHHHHhCCC---HHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-C-hhhHHHHHHHhh-------hccHHHHHH
Confidence 34445555444 66666666555321 112334444444444 2 333444433332 111233455
Q ss_pred HhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHH-HHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHH
Q 002975 397 ACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISM-YARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFE 475 (861)
Q Consensus 397 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 475 (861)
.|...|.+++|.++|+... .+...+.. +-..+++++|.++.++.. +..+|..+..++...|++++|++
T Consensus 1058 Iai~lglyEEAf~IYkKa~---------~~~~A~~VLie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFD---------VNTSAVQVLIEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcC---------CHHHHHHHHHHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHH
Confidence 6667777777777777642 11111222 336777888888877663 35678888888888888888888
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCc
Q 002975 476 LLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNV 555 (861)
Q Consensus 476 l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~ 555 (861)
.|.+. -|...|..++.+|.+.|+++++.+.+...++.. +++.+.+.++.+|++.+++++..... ..++.
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ 1195 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNN 1195 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCH
Confidence 88653 466777788888888888888888888777654 44444456888888888888644442 34566
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 002975 556 ISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDL 635 (861)
Q Consensus 556 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 635 (861)
..|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++.. +..+|..+..+
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~a 1259 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFA 1259 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHH
Confidence 67777888888888888888888774 377888888888888888888887653 34677777777
Q ss_pred hhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc
Q 002975 636 LGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASA 705 (861)
Q Consensus 636 ~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~ 705 (861)
+...|++..|....... .-++..+..++..|...|.+++|+..+++++.++|.+.+.+..|+.+|++.
T Consensus 1260 cve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 78888888888877653 334455668888899999999999999999999999999999999988775
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=3.6e-17 Score=175.46 Aligned_cols=304 Identities=11% Similarity=-0.003 Sum_probs=193.5
Q ss_pred hhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC---CCeehHHHHHHHHH
Q 002975 389 FTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFE---KNLVSYNTMVDAYA 465 (861)
Q Consensus 389 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 465 (861)
..+..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...|.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 344555556666666666666666666543 33445556666666666666666666665522 23345666666666
Q ss_pred hcCChhHHHHHHHHHhhcCCCC---C-HHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHH
Q 002975 466 KNLNSEKAFELLHEIEDTGVGT---S-AYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVE 541 (861)
Q Consensus 466 ~~g~~~~A~~l~~~m~~~g~~p---~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 541 (861)
..|++++|+..|++.... .| + ...+..+... .. ...+..+...|...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKA-------DE----------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHccCHH
Confidence 666666666666666543 23 1 1111111100 00 001122346667777777
Q ss_pred HHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002975 542 AAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMY 617 (861)
Q Consensus 542 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 617 (861)
+|.+.|+++.+ .+...|..+...|...|++++|+..++++.+. .| +..++..+...+...|++++|...|+...
T Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777776652 34566777777777777777777777777763 34 35566777777777777777777777776
Q ss_pred hhcCCCCChh-H---------HHHHHHHhhhcCCHHHHHHHHHhCC-CCCC-H----HHHHHHHHHHHHhCCHHHHHHHH
Q 002975 618 DEHGIVQRME-H---------YACMVDLLGRSGSLTEALEFIRSMP-LSAD-V----LVWRTFLGACRVHGDTELGKHAA 681 (861)
Q Consensus 618 ~~~~~~p~~~-~---------~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~ 681 (861)
+...-.+... . ...+...+.+.|++++|.+.++++. ..|+ . ..|..+...+...|+++.|...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 295 (359)
T 3ieg_A 216 KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295 (359)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3321111111 1 1123566888889999888888763 2333 3 23445677888899999999999
Q ss_pred HHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 682 EMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 682 ~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+++++.+|+++..+..++.+|...|++++|.+.++...+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 296 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999888765
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=3.1e-17 Score=176.00 Aligned_cols=326 Identities=11% Similarity=0.065 Sum_probs=250.0
Q ss_pred CcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHH
Q 002975 351 NVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLI 430 (861)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 430 (861)
|+..|..+...+...|+ +++|+..|+++.+.. +.+..++..+...+...|+++.|...+..+.+.. +.+...+..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~-~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQ-LADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHH
Confidence 34567788889999999 999999999998753 2356788888889999999999999999999875 44667889999
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCCe------ehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccc
Q 002975 431 SMYARSGRMEDARKAFESLFEKNL------VSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGA 504 (861)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 504 (861)
.+|.+.|++++|...|++..+.++ ..+..+...+. ...+..+...+...|+
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccC
Confidence 999999999999999999855433 22332211100 0112233445566677
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 002975 505 IGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKM 581 (861)
Q Consensus 505 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 581 (861)
+++|.+.+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|+..|++.
T Consensus 136 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 136 YTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777776654 45677788888888888888888888887763 45678888888888999999999999988
Q ss_pred HHcCCCCCh-HHHH------------HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCh--hHHHHHHHHhhhcCCHHHHH
Q 002975 582 LADGIKPNG-ITYI------------AVLSACSHAGLISEGWKHFRSMYDEHGIVQRM--EHYACMVDLLGRSGSLTEAL 646 (861)
Q Consensus 582 ~~~g~~p~~-~t~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~l~~~~~r~g~~~eA~ 646 (861)
.+. .|+. ..+. .+...+...|++++|...++.+.+...-.+.. ..+..+...+.+.|++++|.
T Consensus 215 ~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred Hhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 883 4543 2222 23666888999999999999988543222211 33556788999999999999
Q ss_pred HHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc
Q 002975 647 EFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASA 705 (861)
Q Consensus 647 ~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~ 705 (861)
+.+++.. .+.+..+|..+...+...|+++.|...++++++++|++...+..|..++...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 9998873 3346889999999999999999999999999999999999988888776553
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=5.7e-17 Score=171.76 Aligned_cols=286 Identities=11% Similarity=0.035 Sum_probs=227.4
Q ss_pred CCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHH
Q 002975 420 ALDDCVGNSLISMYARSGRMEDARKAFESLFE---KNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLL 496 (861)
Q Consensus 420 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 496 (861)
+.+..++..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|+.+++++.... +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 45566677777778888888888888887732 244566667778888888888888888887653 33556777777
Q ss_pred HHhhccc-chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChH
Q 002975 497 SGASSIG-AIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAA 572 (861)
Q Consensus 497 ~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 572 (861)
..+...| ++++|.+.+..+.+.. +.+...+..+...|...|++++|.+.|+++.+ .+...|..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 8888888 8888888888887765 45677888899999999999999999988763 34677888889999999999
Q ss_pred HHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-------CCCChhHHHHHHHHhhhcCCHHH
Q 002975 573 RALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHG-------IVQRMEHYACMVDLLGRSGSLTE 644 (861)
Q Consensus 573 ~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-------~~p~~~~~~~l~~~~~r~g~~~e 644 (861)
+|+..|++..+. .|+ ...+..+...+...|++++|..+|+.+.+... .+.....+..+..+|.+.|++++
T Consensus 177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999884 454 56888888999999999999999998875321 13345788889999999999999
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH-HHcCChh
Q 002975 645 ALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLY-ASAGHWE 709 (861)
Q Consensus 645 A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y-~~~g~~~ 709 (861)
|.+.++++. .+.+..+|..+...+...|+.+.|...++++++++|+++..+..|+.+| ...|+.+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999998863 3346778999999999999999999999999999999999999999988 4555543
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.75 E-value=8.4e-16 Score=162.67 Aligned_cols=263 Identities=10% Similarity=0.027 Sum_probs=228.1
Q ss_pred CCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHH
Q 002975 452 KNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALI 531 (861)
Q Consensus 452 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 531 (861)
.+...+..+...+...|++++|+++|+++.... +.+...+..++..+...|+.++|...+..+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 456678888999999999999999999998764 3344566667788899999999999999999875 56788899999
Q ss_pred HHHHccC-CHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCH
Q 002975 532 SMYSRCA-NVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLI 606 (861)
Q Consensus 532 ~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~ 606 (861)
..|...| ++++|.+.|++..+ .+...|..+...|...|++++|+..|+++.+. .|+ ...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHhhH
Confidence 9999999 99999999998774 35678999999999999999999999999985 444 56777799999999999
Q ss_pred HHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-C----------CCCHHHHHHHHHHHHHhCCHH
Q 002975 607 SEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-L----------SADVLVWRTFLGACRVHGDTE 675 (861)
Q Consensus 607 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~----------~p~~~~~~~ll~~~~~~g~~~ 675 (861)
++|..+|+.+.+.. +.+...+..+...+.+.|++++|.+.++++. . +.+..+|..+...+...|+.+
T Consensus 176 ~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALSIA--PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 99999999988322 2356788899999999999999999998762 1 334679999999999999999
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 676 LGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 676 ~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
.|+..++++++++|+++..+..++.+|...|++++|.+.+++..+
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999986654
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=2.1e-16 Score=170.43 Aligned_cols=278 Identities=9% Similarity=-0.004 Sum_probs=219.8
Q ss_pred HHHcCCHHHHHH-HHHhcCC---C----CeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccc
Q 002975 433 YARSGRMEDARK-AFESLFE---K----NLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGA 504 (861)
Q Consensus 433 ~~~~g~~~~A~~-~~~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 504 (861)
|.-.|++++|.+ .|++... . +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344577888887 7775532 1 34568888888899999999999999988763 4467788888888889999
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--C-CchHHHH---------------HHHHHH
Q 002975 505 IGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED--R-NVISWTS---------------MITGFA 566 (861)
Q Consensus 505 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~ 566 (861)
+++|...+..+.+.. +.+..++..+...|...|++++|.+.|+++.. | +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 999999999888876 55778888999999999999999999988763 2 2222221 133344
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHH
Q 002975 567 KHGFAARALEIFYKMLADGIKPN---GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLT 643 (861)
Q Consensus 567 ~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~ 643 (861)
..|++++|+..|+++.+. .|+ ..++..+...+...|++++|..+|+.+.+.. +.+...+..+..++.+.|+++
T Consensus 193 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred hcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHcCCHH
Confidence 889999999999999984 454 6788899999999999999999999988432 234678899999999999999
Q ss_pred HHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-----------CchHHHHHHHHHHcCChhH
Q 002975 644 EALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD-----------PAAHILLSNLYASAGHWEY 710 (861)
Q Consensus 644 eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~L~~~y~~~g~~~~ 710 (861)
+|++.++++. .+.+..+|..+..++...|+++.|...+++++++.|++ ..++..|+.+|...|++++
T Consensus 269 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 9999999873 34467899999999999999999999999999999988 7889999999999999999
Q ss_pred HHHHHH
Q 002975 711 VANIRK 716 (861)
Q Consensus 711 a~~~~~ 716 (861)
|..+++
T Consensus 349 A~~~~~ 354 (368)
T 1fch_A 349 YGAADA 354 (368)
T ss_dssp HHHHHT
T ss_pred HHHhHH
Confidence 998876
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.73 E-value=1.1e-16 Score=168.28 Aligned_cols=278 Identities=14% Similarity=0.143 Sum_probs=89.7
Q ss_pred CCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHHHHHHHHH
Q 002975 230 SVDLESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWA 309 (861)
Q Consensus 230 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~ 309 (861)
.|++++|.+.++++..|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|+++++...+...
T Consensus 16 ~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 16 IGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 788999999999997664 9999999999999999999999753 68889999999999999999999988877
Q ss_pred HHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChh
Q 002975 310 IRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHF 389 (861)
Q Consensus 310 ~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~ 389 (861)
.+. .+++.+.+.|+.+|.++|+ ++++.++++. |+..+|+.+...|...|. +++|..+|..+ .
T Consensus 88 rk~--~~~~~i~~~Li~~Y~Klg~---l~e~e~f~~~---pn~~a~~~IGd~~~~~g~-yeeA~~~Y~~a---------~ 149 (449)
T 1b89_A 88 RKK--ARESYVETELIFALAKTNR---LAELEEFING---PNNAHIQQVGDRCYDEKM-YDAAKLLYNNV---------S 149 (449)
T ss_dssp -----------------------C---HHHHTTTTTC---C----------------C-TTTHHHHHHHT---------T
T ss_pred HHh--CccchhHHHHHHHHHHhCC---HHHHHHHHcC---CcHHHHHHHHHHHHHcCC-HHHHHHHHHHh---------h
Confidence 774 4557888999999999888 8887777653 555677777777777777 77777777765 2
Q ss_pred hHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCC
Q 002975 390 TFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLN 469 (861)
Q Consensus 390 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 469 (861)
.|. .|++++.+.|++++|.+.++++ .++.+|..++.+|...|+
T Consensus 150 n~~-----------------------------------~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~e 192 (449)
T 1b89_A 150 NFG-----------------------------------RLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKE 192 (449)
T ss_dssp CHH-----------------------------------HHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTC
T ss_pred hHH-----------------------------------HHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCc
Confidence 344 4555555555555555555554 244555555555555555
Q ss_pred hhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcc--CCHHHHHHHH
Q 002975 470 SEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRC--ANVEAAFQVF 547 (861)
Q Consensus 470 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~--g~~~~A~~~~ 547 (861)
++.|...... +..++.-...++..|.+.|.++++..+++...... +-...+|+-|.-+|+|- +++.+..+.|
T Consensus 193 f~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 193 FRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp HHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 5555332222 11122223344455555555555555555554333 33444555555555543 3444555555
Q ss_pred HhccC--------CCchHHHHHHHHHHhcCChHHHHH
Q 002975 548 KEMED--------RNVISWTSMITGFAKHGFAARALE 576 (861)
Q Consensus 548 ~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~ 576 (861)
..-.. .+...|.-+.-.|.+.++++.|..
T Consensus 267 ~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 267 WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 43221 245667777777777777777665
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.72 E-value=1.8e-14 Score=161.71 Aligned_cols=349 Identities=12% Similarity=0.041 Sum_probs=271.7
Q ss_pred HHHHHHHHhccCC-CCcccHHHHHHHHHh----cCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcc----cCChHHH
Q 002975 337 VDDSRKVFDRMLD-HNVMSWTAIITGYVQ----SGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGN----LLDSNVA 407 (861)
Q Consensus 337 ~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a 407 (861)
.+.|...|++..+ .+...+..|...|.. .++ .++|++.|++..+.| +...+..+-..+.. .+++++|
T Consensus 59 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~-~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 134 (490)
T 2xm6_A 59 LTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQD-YAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAES 134 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 7777777766533 345566666666666 666 788888888877654 44455555555555 6788888
Q ss_pred HHHHHHHHHcCCCCCcchhhHHHHHHHH----cCCHHHHHHHHHhcCC-CCeehHHHHHHHHHh----cCChhHHHHHHH
Q 002975 408 EQVYTHAVKRGRALDDCVGNSLISMYAR----SGRMEDARKAFESLFE-KNLVSYNTMVDAYAK----NLNSEKAFELLH 478 (861)
Q Consensus 408 ~~i~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~ 478 (861)
...++...+.| +...+..|..+|.. .++.++|.+.|++..+ .+...+..|...|.. .++.++|++.|+
T Consensus 135 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 211 (490)
T 2xm6_A 135 VKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYR 211 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence 88888887765 45566777778877 7889999999987743 456678888888887 889999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHhhc----ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc----cCCHHHHHHHHHhc
Q 002975 479 EIEDTGVGTSAYTFASLLSGASS----IGAIGKGEQIHARIIKSGFESNHCIYNALISMYSR----CANVEAAFQVFKEM 550 (861)
Q Consensus 479 ~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~ 550 (861)
+..+.| +...+..+...+.. .++.++|.+.+....+.| +...+..|..+|.. .++.++|...|+..
T Consensus 212 ~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a 285 (490)
T 2xm6_A 212 KSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKS 285 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Confidence 988765 55666677777765 789999999999988765 45677778888887 89999999999987
Q ss_pred cC-CCchHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhcC
Q 002975 551 ED-RNVISWTSMITGFAKH-----GFAARALEIFYKMLADGIKPNGITYIAVLSACSHAG---LISEGWKHFRSMYDEHG 621 (861)
Q Consensus 551 ~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~ 621 (861)
.+ .+...+..|...|... ++.++|+..|++..+.| +...+..+...+...| +.++|.++|++..+.
T Consensus 286 ~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-- 360 (490)
T 2xm6_A 286 AEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-- 360 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--
T ss_pred HHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--
Confidence 74 4667888888888887 89999999999999865 4456777777777766 789999999998843
Q ss_pred CCCChhHHHHHHHHhhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHhccCCC---
Q 002975 622 IVQRMEHYACMVDLLGR----SGSLTEALEFIRSMPLSADVLVWRTFLGACRV----HGDTELGKHAAEMILEQDPQ--- 690 (861)
Q Consensus 622 ~~p~~~~~~~l~~~~~r----~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~--- 690 (861)
.+...+..+..+|.. .+++++|.+.+++.....++..+..|...+.. .+|.++|...++++.+.+|+
T Consensus 361 --~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~ 438 (490)
T 2xm6_A 361 --GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFG 438 (490)
T ss_dssp --TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHH
T ss_pred --CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcC
Confidence 356778888888888 89999999999987545578888899999888 89999999999999999954
Q ss_pred CCchHHHHHHHHHHc
Q 002975 691 DPAAHILLSNLYASA 705 (861)
Q Consensus 691 ~~~~~~~L~~~y~~~ 705 (861)
++.+...|+.++...
T Consensus 439 ~~~a~~~l~~~~~~~ 453 (490)
T 2xm6_A 439 TENRNITEKKLTAKQ 453 (490)
T ss_dssp HHHHHHHHTTSCHHH
T ss_pred CHHHHHHHHhcCHhH
Confidence 777777787776653
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=2.2e-16 Score=166.05 Aligned_cols=347 Identities=15% Similarity=0.151 Sum_probs=164.8
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHH
Q 002975 337 VDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVK 416 (861)
Q Consensus 337 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 416 (861)
+++|.++++++..+ .+|..+..++.+.|+ +++|++.|.+. +|..+|..++.++...|++++|...+...++
T Consensus 19 ld~A~~fae~~~~~--~vWs~La~A~l~~g~-~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark 89 (449)
T 1b89_A 19 LDRAYEFAERCNEP--AVWSQLAKAQLQKGM-VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARK 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCCh--HHHHHHHHHHHHcCC-HHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999655 499999999999999 99999999763 6888999999999999999999998888777
Q ss_pred cCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHH
Q 002975 417 RGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLL 496 (861)
Q Consensus 417 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 496 (861)
. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|..+|..+ ..|..+.
T Consensus 90 ~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA 155 (449)
T 1b89_A 90 K--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLA 155 (449)
T ss_dssp ---------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHH
T ss_pred h--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHH
Confidence 4 45578899999999999999999988864 67779999999999999999999999987 3788999
Q ss_pred HHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHH
Q 002975 497 SGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALE 576 (861)
Q Consensus 497 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 576 (861)
.++.+.|+++.|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++|+.
T Consensus 156 ~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~ 228 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELIT 228 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999888 378999999999999999999987777654 444445568899999999999999
Q ss_pred HHHHHHHcCCCCC-hHHHHHHHHHHH--hcCCHHHHHHHHHHHHhhcCCCC------ChhHHHHHHHHhhhcCCHHHHHH
Q 002975 577 IFYKMLADGIKPN-GITYIAVLSACS--HAGLISEGWKHFRSMYDEHGIVQ------RMEHYACMVDLLGRSGSLTEALE 647 (861)
Q Consensus 577 ~~~~m~~~g~~p~-~~t~~~ll~a~~--~~g~~~~a~~~~~~m~~~~~~~p------~~~~~~~l~~~~~r~g~~~eA~~ 647 (861)
+++..+. ..+- ...|+-+.-+++ +.+++.+.++.|.. ..+++| +..+|.-++-+|...++++.|..
T Consensus 229 lLe~aL~--le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~---~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 229 MLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHTT--STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST---TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 9999876 4444 334554444444 45566666666653 446666 45678999999999999999988
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC----------chHHHHHHHHHHcCChhHHHHHHHH
Q 002975 648 FIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDP----------AAHILLSNLYASAGHWEYVANIRKR 717 (861)
Q Consensus 648 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----------~~~~~L~~~y~~~g~~~~a~~~~~~ 717 (861)
.+-+-+ |++---..+.....+..+.|.--++..=-++-.|.-. --+.....++.+.|...-+...+..
T Consensus 304 tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~yl~~ 381 (449)
T 1b89_A 304 TMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRS 381 (449)
T ss_dssp HHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHH
T ss_pred HHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCcHHHHHHHHHcCCcHHHHHHHHH
Confidence 776653 1211112233334444444444444333333333210 0012233445555555555555555
Q ss_pred HHh
Q 002975 718 MKE 720 (861)
Q Consensus 718 m~~ 720 (861)
++.
T Consensus 382 v~~ 384 (449)
T 1b89_A 382 VQN 384 (449)
T ss_dssp HHT
T ss_pred HHH
Confidence 444
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=5.7e-16 Score=166.83 Aligned_cols=258 Identities=9% Similarity=-0.043 Sum_probs=210.0
Q ss_pred CeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 002975 453 NLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALIS 532 (861)
Q Consensus 453 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 532 (861)
+...|..+...+.+.|++++|+.+|+++.... +.+..++..+...+...|++++|...+..+++.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888888999999999999999988764 4467788888889999999999999999988875 556888999999
Q ss_pred HHHccCCHHHHHHHHHhccCCC-------------chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---ChHHHHHH
Q 002975 533 MYSRCANVEAAFQVFKEMEDRN-------------VISWTSMITGFAKHGFAARALEIFYKMLADGIKP---NGITYIAV 596 (861)
Q Consensus 533 ~y~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~l 596 (861)
.|.+.|++++|...|+++.+.+ ...+..+...|...|++++|+..|+++.+. .| +..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHH
Confidence 9999999999999999876421 123344578889999999999999999985 44 46788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCH
Q 002975 597 LSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDT 674 (861)
Q Consensus 597 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~ 674 (861)
...+...|++++|..+|+.+.+.. +.+...|..+..+|.+.|++++|++.++++. ..| +..+|..+..++...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 999999999999999999988432 3356789999999999999999999999873 334 588999999999999999
Q ss_pred HHHHHHHHHHhccCCC------------CCchHHHHHHHHHHcCChhHHHHHHH
Q 002975 675 ELGKHAAEMILEQDPQ------------DPAAHILLSNLYASAGHWEYVANIRK 716 (861)
Q Consensus 675 ~~a~~~~~~~~~~~p~------------~~~~~~~L~~~y~~~g~~~~a~~~~~ 716 (861)
+.|...+++++++.|+ +...+..|+.++...|+.+.+.++.+
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999887 36778899999999999999887765
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.70 E-value=1.9e-15 Score=156.22 Aligned_cols=247 Identities=13% Similarity=0.066 Sum_probs=151.7
Q ss_pred HHHHcCCHHHHHHHHHhcCCCCe----ehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHH
Q 002975 432 MYARSGRMEDARKAFESLFEKNL----VSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGK 507 (861)
Q Consensus 432 ~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 507 (861)
-....|+++.|+..++.....++ .....+..+|...|++++|+..++. .-.|+..++..+...+...++.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 34557788888887777654432 2334466777778888777765543 134455566666666666666777
Q ss_pred HHHHHHHHHHhCC-CCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 002975 508 GEQIHARIIKSGF-ESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGI 586 (861)
Q Consensus 508 a~~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 586 (861)
|.+.++.+...+. +.+...+..+..+|...|++++|.+.|++ ..+...+..++..|.+.|++++|++.|+++.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-- 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 7777766666543 33445555566666666777777666666 345556666666666666666666666666663
Q ss_pred CCChHHHH---HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 002975 587 KPNGITYI---AVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRT 663 (861)
Q Consensus 587 ~p~~~t~~---~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ 663 (861)
.|+..... .++..+...|++++|..+|+++.+. .+.++.+|+.
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~----------------------------------~p~~~~~~~~ 205 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK----------------------------------CSPTLLLLNG 205 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH----------------------------------SCCCHHHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh----------------------------------CCCcHHHHHH
Confidence 34432111 1112222234455555555444422 2345667777
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhH-HHHHHHHHHh
Q 002975 664 FLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEY-VANIRKRMKE 720 (861)
Q Consensus 664 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~-a~~~~~~m~~ 720 (861)
+..++...|++++|+..++++++++|+++.++..++.++...|++++ +.++++++.+
T Consensus 206 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 206 QAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777765 4566666654
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=6e-14 Score=159.14 Aligned_cols=390 Identities=12% Similarity=0.107 Sum_probs=247.2
Q ss_pred cchHHHHHHHHHhCCCCCCHHHHHHHHhccCCC---CcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHH
Q 002975 318 VCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDH---NVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASV 394 (861)
Q Consensus 318 ~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~l 394 (861)
...+..++. +.+.|+ ++.|..+|+++... +...|...+..+.+.|+ .++|..+|++.... .|+...+...
T Consensus 13 ~~~w~~l~~-~~~~~~---~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~-~~~a~~~~~ral~~--~p~~~lw~~~ 85 (530)
T 2ooe_A 13 LDAWSILIR-EAQNQP---IDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKN-YDKVEKLFQRCLMK--VLHIDLWKCY 85 (530)
T ss_dssp HHHHHHHHH-HHHSSC---HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHTTT--CCCHHHHHHH
T ss_pred HHHHHHHHH-HHHhCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhc--CCChHHHHHH
Confidence 334444444 234333 55666665555332 23345555555555555 66666666665543 2444444433
Q ss_pred HHHh-cccCChHHHHH----HHHHHHHc-CCCC-CcchhhHHHHHHHH---------cCCHHHHHHHHHhcCC-CCe---
Q 002975 395 LKAC-GNLLDSNVAEQ----VYTHAVKR-GRAL-DDCVGNSLISMYAR---------SGRMEDARKAFESLFE-KNL--- 454 (861)
Q Consensus 395 l~a~-~~~~~~~~a~~----i~~~~~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~-~~~--- 454 (861)
+... ...|+.+.|.+ +++..++. |..+ +..+|...+....+ .|+++.|..+|++... |..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 3211 22344444333 44444332 3322 23344444444433 5666677777766543 111
Q ss_pred ehHHHHHHHH-------------HhcCChhHHHHHHHHH------hhcC---CCCCH--------HHHHHHHHHhhc---
Q 002975 455 VSYNTMVDAY-------------AKNLNSEKAFELLHEI------EDTG---VGTSA--------YTFASLLSGASS--- 501 (861)
Q Consensus 455 ~~~~~li~~~-------------~~~g~~~~A~~l~~~m------~~~g---~~p~~--------~t~~~ll~a~~~--- 501 (861)
..|....... .+.+++.+|..+++++ .+.. +.|+. ..|...+.....
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 1222211100 1234567777777663 2221 24431 334443332221
Q ss_pred -ccch----HHHHHHHHHHHHhCCCCchhHHHHHHHHHHc-------cCCHH-------HHHHHHHhccC---C-CchHH
Q 002975 502 -IGAI----GKGEQIHARIIKSGFESNHCIYNALISMYSR-------CANVE-------AAFQVFKEMED---R-NVISW 558 (861)
Q Consensus 502 -~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~ 558 (861)
.++. +.+..++++++... +.+..+|..++..+.+ .|+++ +|..+|++..+ | +...|
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~ 324 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 324 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH
Confidence 1222 36677888888764 5678888888888876 79987 89999998763 3 46789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-hhHHHHHHHH
Q 002975 559 TSMITGFAKHGFAARALEIFYKMLADGIKPNG--ITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR-MEHYACMVDL 635 (861)
Q Consensus 559 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~ 635 (861)
..++..+.+.|++++|..+|+++++ ..|+. ..|..++..+.+.|++++|..+|+...+. .|. ...|.....+
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~ 399 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALM 399 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHH
Confidence 9999999999999999999999999 56753 47888888888999999999999998833 333 2333332222
Q ss_pred -hhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCc----hHHHHHHHHHHcCCh
Q 002975 636 -LGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPA----AHILLSNLYASAGHW 708 (861)
Q Consensus 636 -~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~L~~~y~~~g~~ 708 (861)
+...|+.++|.++|++.. ..| ++.+|..++......|+.+.|..+++++++..|.++. .+..........|+.
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 346899999999999763 334 6789999999999999999999999999999887765 666777888889999
Q ss_pred hHHHHHHHHHHh
Q 002975 709 EYVANIRKRMKE 720 (861)
Q Consensus 709 ~~a~~~~~~m~~ 720 (861)
+.+.++.+++.+
T Consensus 480 ~~~~~~~~r~~~ 491 (530)
T 2ooe_A 480 ASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999888866
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.70 E-value=1.1e-13 Score=155.24 Aligned_cols=350 Identities=16% Similarity=0.068 Sum_probs=292.3
Q ss_pred CcccHHHHHHHHHh----cCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcc----cCChHHHHHHHHHHHHcCCCCC
Q 002975 351 NVMSWTAIITGYVQ----SGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGN----LLDSNVAEQVYTHAVKRGRALD 422 (861)
Q Consensus 351 ~~~~~~~li~~~~~----~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~ 422 (861)
+..++..+...|.. .++ .++|+..|++..+.| +...+..+-..+.. .++.++|.+.+....+.| +
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~-~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKD-LTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CHHHHHHHHHHHHcCCCCCcC-HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 45556666666666 677 999999999998764 45666667777776 899999999999998876 5
Q ss_pred cchhhHHHHHHHH----cCCHHHHHHHHHhcCCC-CeehHHHHHHHHHh----cCChhHHHHHHHHHhhcCCCCCHHHHH
Q 002975 423 DCVGNSLISMYAR----SGRMEDARKAFESLFEK-NLVSYNTMVDAYAK----NLNSEKAFELLHEIEDTGVGTSAYTFA 493 (861)
Q Consensus 423 ~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~ 493 (861)
...+..|..+|.. .+++++|.+.|++..+. +...+..|...|.. .+++++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5677778889988 88999999999987544 55678888888887 789999999999998875 677788
Q ss_pred HHHHHhhc----ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc----cCCHHHHHHHHHhccC-CCchHHHHHHHH
Q 002975 494 SLLSGASS----IGAIGKGEQIHARIIKSGFESNHCIYNALISMYSR----CANVEAAFQVFKEMED-RNVISWTSMITG 564 (861)
Q Consensus 494 ~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~ 564 (861)
.+...+.. .++.++|.+.+....+.| +...+..|..+|.. .+++++|...|++..+ .+...+..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888877 899999999999998876 56778888889986 8999999999998764 566788888888
Q ss_pred HHh----cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 002975 565 FAK----HGFAARALEIFYKMLADGIKPNGITYIAVLSACSHA-----GLISEGWKHFRSMYDEHGIVQRMEHYACMVDL 635 (861)
Q Consensus 565 ~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 635 (861)
|.. .++.++|+.+|++..+.| +...+..+...+... ++.++|..+|+...+. + +...+..+..+
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHH
Confidence 887 899999999999998865 455677788888777 8999999999998743 2 45667778888
Q ss_pred hhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH----
Q 002975 636 LGRSG---SLTEALEFIRSMPLSADVLVWRTFLGACRV----HGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS---- 704 (861)
Q Consensus 636 ~~r~g---~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~---- 704 (861)
|.+.| ++++|++++++.....++..+..|...+.. .++.++|...++++.+.. ++.++..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 87766 899999999987545678899999999988 899999999999999864 68899999999999
Q ss_pred cCChhHHHHHHHHHHhCC
Q 002975 705 AGHWEYVANIRKRMKERN 722 (861)
Q Consensus 705 ~g~~~~a~~~~~~m~~~~ 722 (861)
.+++++|.+.+++..+.+
T Consensus 416 ~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTND 433 (490)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC
Confidence 899999999999888755
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.69 E-value=7.8e-16 Score=165.87 Aligned_cols=274 Identities=11% Similarity=0.033 Sum_probs=204.9
Q ss_pred CCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHH-HHHHHhhcCC-CC--CHHHHHHHHHHhhcccchHHHHHHH
Q 002975 437 GRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFE-LLHEIEDTGV-GT--SAYTFASLLSGASSIGAIGKGEQIH 512 (861)
Q Consensus 437 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-l~~~m~~~g~-~p--~~~t~~~ll~a~~~~~~~~~a~~~~ 512 (861)
+.++.+...|+.+...+.. ++...|++++|++ .|++...... .| +...+..+...+...|++++|...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 87 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444555555555433322 3445688999998 8887654321 11 3456778888999999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 002975 513 ARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN 589 (861)
Q Consensus 513 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 589 (861)
..+++.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..|+++.+. .|+
T Consensus 88 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~ 164 (368)
T 1fch_A 88 EAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPA 164 (368)
T ss_dssp HHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STT
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcC
Confidence 9999875 56788999999999999999999999998763 46789999999999999999999999999994 454
Q ss_pred hH-HHHH---------------HHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC
Q 002975 590 GI-TYIA---------------VLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP 653 (861)
Q Consensus 590 ~~-t~~~---------------ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~ 653 (861)
.. .+.. .+..+...|++++|..+|+.+.+...-.++...+..+..+|.+.|++++|++.++++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 165 YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 32 2211 2334448999999999999998554333357889999999999999999999999873
Q ss_pred --CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 654 --LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 654 --~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
.+.+..+|..++..+...|+++.|+..++++++++|+++..+..++.+|...|++++|.+.++.+.+
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3446789999999999999999999999999999999999999999999999999999999998865
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=9e-15 Score=151.11 Aligned_cols=273 Identities=10% Similarity=-0.009 Sum_probs=210.9
Q ss_pred HHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHH
Q 002975 396 KACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFE 475 (861)
Q Consensus 396 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 475 (861)
+-....|++..|....+.+..............+..+|...|++++|...++....++..++..+...+...++.++|++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 34456789999998877654332111123445678899999999999998887655566788888999999999999999
Q ss_pred HHHHHhhcCCCCC-HHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--
Q 002975 476 LLHEIEDTGVGTS-AYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED-- 552 (861)
Q Consensus 476 l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-- 552 (861)
.++++...+..|+ ...+..+..++...|++++|.+.+.. +.+...+..++.+|.+.|++++|.+.|+++.+
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 9999998776564 55566667889999999999999987 56788999999999999999999999999874
Q ss_pred CCchHHHHHH----HHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhH
Q 002975 553 RNVISWTSMI----TGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEH 628 (861)
Q Consensus 553 ~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 628 (861)
|+.. ...+. ..+...|++++|+.+|+++.+. .+.+...++.+..++.+.|++++|...|++..+. .
T Consensus 161 p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~---~----- 230 (291)
T 3mkr_A 161 EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK---D----- 230 (291)
T ss_dssp TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C-----
T ss_pred cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C-----
Confidence 5432 22333 3334558999999999999996 2445778889999999999999999999887732 1
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHH-HHHHHHHHhccCCCCCchHHHHHHHHHHcCC
Q 002975 629 YACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTEL-GKHAAEMILEQDPQDPAAHILLSNLYASAGH 707 (861)
Q Consensus 629 ~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~ 707 (861)
+.++.+|..++..+...|+.+. +...++++++++|+++.+. +++.+.+.
T Consensus 231 --------------------------p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~ 280 (291)
T 3mkr_A 231 --------------------------SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKEND 280 (291)
T ss_dssp --------------------------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHH
T ss_pred --------------------------CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHH
Confidence 2256677888888888887754 6788899999999887654 45666666
Q ss_pred hhHHHHH
Q 002975 708 WEYVANI 714 (861)
Q Consensus 708 ~~~a~~~ 714 (861)
++++..-
T Consensus 281 fd~~~~~ 287 (291)
T 3mkr_A 281 FDRLVLQ 287 (291)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666543
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.68 E-value=1.9e-15 Score=162.64 Aligned_cols=230 Identities=10% Similarity=0.024 Sum_probs=196.4
Q ss_pred CHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHH
Q 002975 488 SAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITG 564 (861)
Q Consensus 488 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 564 (861)
+...+..+...+.+.|++++|...++.+++.. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44557888889999999999999999999876 56788999999999999999999999998873 457899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChH-----------HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHH
Q 002975 565 FAKHGFAARALEIFYKMLADGIKPNGI-----------TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMV 633 (861)
Q Consensus 565 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-----------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 633 (861)
|...|++++|+..|+++.+. .|+.. .+..+...+...|++++|..+|+++.+...-.++...+..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999984 45422 223457889999999999999999986543333678899999
Q ss_pred HHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHH
Q 002975 634 DLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYV 711 (861)
Q Consensus 634 ~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a 711 (861)
.+|.+.|++++|++.++++. .+.+..+|..++.++...|+++.|+..++++++++|+++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999873 3446889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 002975 712 ANIRKRMKE 720 (861)
Q Consensus 712 ~~~~~~m~~ 720 (861)
.+.++++.+
T Consensus 301 ~~~~~~al~ 309 (365)
T 4eqf_A 301 VSNFLTALS 309 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998866
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.68 E-value=4.5e-15 Score=156.80 Aligned_cols=258 Identities=9% Similarity=-0.074 Sum_probs=193.1
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 002975 455 VSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMY 534 (861)
Q Consensus 455 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 534 (861)
..|..+...+...|++++|+.+|+++.... +.+..++..+...+...|++++|.+.+..+.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 345555666666666666666666666543 2345566666666666777777777777666654 44566777777777
Q ss_pred HccCCHHHHHHHHHhccC--C-CchHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCChHHHHHH
Q 002975 535 SRCANVEAAFQVFKEMED--R-NVISWTSM--------------IT-GFAKHGFAARALEIFYKMLADGIKPNGITYIAV 596 (861)
Q Consensus 535 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 596 (861)
...|++++|.+.|+++.+ | +...+..+ .. .+...|++++|+..++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 777777777777776653 2 22233332 22 3677889999999999998853 2256788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCH
Q 002975 597 LSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDT 674 (861)
Q Consensus 597 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~ 674 (861)
...+...|++++|..+++.+.+.. +.+...+..+...+.+.|++++|.+.++++. .+.+..+|..+...+...|+.
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 999999999999999999987432 2346778889999999999999999998863 334678999999999999999
Q ss_pred HHHHHHHHHHhccCCC------------CCchHHHHHHHHHHcCChhHHHHHHHH
Q 002975 675 ELGKHAAEMILEQDPQ------------DPAAHILLSNLYASAGHWEYVANIRKR 717 (861)
Q Consensus 675 ~~a~~~~~~~~~~~p~------------~~~~~~~L~~~y~~~g~~~~a~~~~~~ 717 (861)
+.|...+++++++.|+ ++..+..++.+|...|++++|.++++.
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9999999999999999 788999999999999999999988763
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.68 E-value=2.8e-14 Score=159.51 Aligned_cols=331 Identities=12% Similarity=0.031 Sum_probs=200.9
Q ss_pred hhhHHHHHHHhcccCChHHHHHHHHHHHHcC----C--C-CCcchhhHHHHHHHHc--CCHHHHHHHHHhcC--CC-Cee
Q 002975 388 HFTFASVLKACGNLLDSNVAEQVYTHAVKRG----R--A-LDDCVGNSLISMYARS--GRMEDARKAFESLF--EK-NLV 455 (861)
Q Consensus 388 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g----~--~-~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~--~~-~~~ 455 (861)
..+|..+..++...|++++|...++.+.+.. - . ....++..+..++.+. +++++|.+.|++.. .| +..
T Consensus 94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~ 173 (472)
T 4g1t_A 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE 173 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHH
Confidence 3456666666666666666666666554421 0 1 1122344444444443 45788888887763 23 334
Q ss_pred hHHHHHHH---HHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhc----ccchHHHHHHHHHHHHhCCCCchhHHH
Q 002975 456 SYNTMVDA---YAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASS----IGAIGKGEQIHARIIKSGFESNHCIYN 528 (861)
Q Consensus 456 ~~~~li~~---~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 528 (861)
.+..+... +...++.++|++.|++..+.. +.+..++..+...+.. .++.++|.+.++...+.. +.+..++.
T Consensus 174 ~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~ 251 (472)
T 4g1t_A 174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLR 251 (472)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHH
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHH
Confidence 44444443 344677788888888777643 2344455544444433 456778888888887765 55677788
Q ss_pred HHHHHHHccCCHHHHHHHHHhccC--C-CchHHHHHHHHHHh-------------------cCChHHHHHHHHHHHHcCC
Q 002975 529 ALISMYSRCANVEAAFQVFKEMED--R-NVISWTSMITGFAK-------------------HGFAARALEIFYKMLADGI 586 (861)
Q Consensus 529 ~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m~~~g~ 586 (861)
.+...|.+.|++++|...|++..+ | +..+|..+...|.. .+..++|+..|++..+.
T Consensus 252 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-- 329 (472)
T 4g1t_A 252 SAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA-- 329 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--
Confidence 888888888999999888887763 3 44566666655543 23467888888888884
Q ss_pred CCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCh--hHHHHHHH-HhhhcCCHHHHHHHHHhC-CCCCCHHHH
Q 002975 587 KPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRM--EHYACMVD-LLGRSGSLTEALEFIRSM-PLSADVLVW 661 (861)
Q Consensus 587 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~l~~-~~~r~g~~~eA~~~~~~~-~~~p~~~~~ 661 (861)
.|+ ..++..+...+...|++++|...|++..+. ...+.. ..+..+.. .+...|+.++|++.+++. ...|+...+
T Consensus 330 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~ 408 (472)
T 4g1t_A 330 NDNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK 408 (472)
T ss_dssp CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH
T ss_pred CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH
Confidence 454 557888899999999999999999998732 222221 12333333 345789999999999886 356664433
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeEE
Q 002975 662 RTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSWI 732 (861)
Q Consensus 662 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i 732 (861)
.. ..+.++..+++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.+-......+|+
T Consensus 409 ~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 409 EK---------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HH---------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HH---------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 22 234556778899999999999999999999999999999999998888666555566664
No 32
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.66 E-value=3.3e-13 Score=153.02 Aligned_cols=416 Identities=12% Similarity=0.091 Sum_probs=264.1
Q ss_pred CCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHH
Q 002975 213 DSDVCVGCALIDMFVKGSVDLESAYKVFDKMTE--K-NTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGV 289 (861)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 289 (861)
|.+...|..++. +.+ .|++++|..+|+++.+ | +...|...+..+.+.|++++|..+|++.... .|+...+...
T Consensus 10 P~~~~~w~~l~~-~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQ-NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHH-SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHH-hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHH
Confidence 667778888887 466 7888888888888765 3 4556888888888888888888888888765 3565544444
Q ss_pred HHHH-hccCCchHHHH----HHHHHHHh-CCCC-ccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCcccHHHHHHHH
Q 002975 290 VSAC-SELELFTSGKQ----LHSWAIRT-GLAL-DVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGY 362 (861)
Q Consensus 290 l~a~-~~~~~~~~a~~----i~~~~~~~-g~~~-~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 362 (861)
+... ...|+.+.+++ +++.+++. |..+ +..+|...+....+... ... +
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~------------------~~~-------~ 140 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEA------------------VGS-------Y 140 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCC------------------CSS-------T
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCC------------------ccc-------H
Confidence 4322 23456665554 55555543 4433 23445555544433100 000 0
Q ss_pred HhcCCChHHHHHHHHHHhhCCCCCCh---hhHHHHHHH---h----------cccCChHHHHHHHHHHHHcCCCCCcchh
Q 002975 363 VQSGGRDKEAVKLFSDMIQGQVAPNH---FTFASVLKA---C----------GNLLDSNVAEQVYTHAVKRGRALDDCVG 426 (861)
Q Consensus 363 ~~~g~~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~a---~----------~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 426 (861)
...|+ .++|..+|++..+. |+. ..|...... . ...+++..|..++.....
T Consensus 141 ~~~~~-~~~a~~~y~~al~~---P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~---------- 206 (530)
T 2ooe_A 141 AENQR-ITAVRRVYQRGCVN---PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYET---------- 206 (530)
T ss_dssp THHHH-HHHHHHHHHHHTTS---CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHH----------
T ss_pred HHHhH-HHHHHHHHHHHHhc---hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHH----------
Confidence 11233 44555555554441 211 111111000 0 011222333333222110
Q ss_pred hHHHHHHHHcCCHHHHHHHHHhc---CCCC--------eehHHHHHHHHHhc----CCh----hHHHHHHHHHhhcCCCC
Q 002975 427 NSLISMYARSGRMEDARKAFESL---FEKN--------LVSYNTMVDAYAKN----LNS----EKAFELLHEIEDTGVGT 487 (861)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~~---~~~~--------~~~~~~li~~~~~~----g~~----~~A~~l~~~m~~~g~~p 487 (861)
..+.++.. ..|+ ...|...+.-...+ ++. ++|..+|++.... .+-
T Consensus 207 ---------------~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~ 270 (530)
T 2ooe_A 207 ---------------VMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGH 270 (530)
T ss_dssp ---------------HHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTT
T ss_pred ---------------HHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCC
Confidence 00111110 0111 12344444332222 222 3677888887765 234
Q ss_pred CHHHHHHHHHHhhc-------ccchH-------HHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC-
Q 002975 488 SAYTFASLLSGASS-------IGAIG-------KGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED- 552 (861)
Q Consensus 488 ~~~t~~~ll~a~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~- 552 (861)
+...|......+.+ .|+++ +|..++++.++.-.+.+...+..++..+.+.|++++|..+|+++.+
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 56677776666654 68876 8899999888632355788999999999999999999999998873
Q ss_pred -CC-c-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHH-HHhcCCHHHHHHHHHHHHhhcCCCCChh
Q 002975 553 -RN-V-ISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSA-CSHAGLISEGWKHFRSMYDEHGIVQRME 627 (861)
Q Consensus 553 -~~-~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 627 (861)
|+ . ..|..++..+.+.|+.++|.++|++..+. .|+ ...|...+.. +...|+.++|..+|+...+.. +.+..
T Consensus 351 ~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~ 426 (530)
T 2ooe_A 351 EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPE 426 (530)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHH
T ss_pred cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHH
Confidence 33 2 47999999999999999999999999984 443 3334333322 336899999999999988554 23567
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCC----CCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Q 002975 628 HYACMVDLLGRSGSLTEALEFIRSMP----LSAD--VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD 691 (861)
Q Consensus 628 ~~~~l~~~~~r~g~~~eA~~~~~~~~----~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 691 (861)
.+..+++++.+.|+.++|..+|++.. ..|+ ..+|...+.....+|+.+.+..+.+++.+..|++
T Consensus 427 ~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 427 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 88999999999999999999999873 2332 5589999999999999999999999999999853
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.62 E-value=3.8e-16 Score=176.74 Aligned_cols=129 Identities=12% Similarity=0.165 Sum_probs=102.1
Q ss_pred CCCchhHHHHHHHHHHccCCHHHHHHHHHhcc-------CCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHH
Q 002975 520 FESNHCIYNALISMYSRCANVEAAFQVFKEME-------DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGIT 592 (861)
Q Consensus 520 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 592 (861)
...-..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456678888888888888888888886653 47888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHH
Q 002975 593 YIAVLSACSHAGL-ISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFI 649 (861)
Q Consensus 593 ~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~ 649 (861)
|+++|.++++.|. .++|.++|++|. ..|+.||..+|++++....|.+-++...++.
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~-~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~ 259 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMS-QEGLKLQALFTAVLLSEEDRATVLKAVHKVK 259 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH-HHTCCSHHHHHHSCCCHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCCCChhhcccccChhhHHHHHHHHHHhC
Confidence 8888888888887 467888888887 6688888888888887777765555555443
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.60 E-value=4.4e-16 Score=176.22 Aligned_cols=150 Identities=11% Similarity=0.124 Sum_probs=94.9
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 002975 455 VSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMY 534 (861)
Q Consensus 455 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 534 (861)
.+||+||++|++.|+.++|.++|.+|.+. .+.|+.||+.+||+||++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m--------------------------------~~kG~~PdvvTYNtLI~Gl 175 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQ--------------------------------RQKRKLLTLDMYNAVMLGW 175 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHS--------------------------------HHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------------------------------hhcCCCCCHhHHHHHHHHH
Confidence 46777777777777777777777665432 1224455555555555555
Q ss_pred HccCCHHHHHHHHHhcc----CCCchHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH
Q 002975 535 SRCANVEAAFQVFKEME----DRNVISWTSMITGFAKHGFA-ARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEG 609 (861)
Q Consensus 535 ~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 609 (861)
++.|++++|.++|++|. .||++|||+||.++++.|+. ++|.++|++|.+.|+.||.+||++++.++.+.+.++..
T Consensus 176 ck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V 255 (1134)
T 3spa_A 176 ARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255 (1134)
T ss_dssp HHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH
Confidence 55555555555555554 36666777777777777774 67888999999999999999999888777665444333
Q ss_pred HHHHHHHHhhcCCC----CChhHHHHHHHHhhhcC
Q 002975 610 WKHFRSMYDEHGIV----QRMEHYACMVDLLGRSG 640 (861)
Q Consensus 610 ~~~~~~m~~~~~~~----p~~~~~~~l~~~~~r~g 640 (861)
+++...+... |...+..-|.++|.+.+
T Consensus 256 ----rkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 256 ----HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp ----GGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred ----HHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 3333333222 11334445667777665
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.59 E-value=1.5e-13 Score=145.03 Aligned_cols=185 Identities=11% Similarity=0.042 Sum_probs=102.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcC---CCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHH-HHH----------
Q 002975 428 SLISMYARSGRMEDARKAFESLF---EKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAY-TFA---------- 493 (861)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~---------- 493 (861)
.+...|.+.|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.... |+.. .+.
T Consensus 60 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 137 (327)
T 3cv0_A 60 SLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDID 137 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHH
Confidence 33444444444444444444431 1233445555555555555555555555555432 1111 111
Q ss_pred ---HHHH--HhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHH
Q 002975 494 ---SLLS--GASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGF 565 (861)
Q Consensus 494 ---~ll~--a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 565 (861)
.+.. .+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|.+.|+++.+ .+..+|..+...|
T Consensus 138 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 216 (327)
T 3cv0_A 138 DLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATL 216 (327)
T ss_dssp --------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 1102 2556667777777777766654 34566666677777777777777777766542 3445666666667
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002975 566 AKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMY 617 (861)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 617 (861)
...|++++|+..|+++.+. .| +..++..+..++...|++++|...|+.+.
T Consensus 217 ~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 217 ANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI 267 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 7777777777777766663 33 34556666666666666666666666665
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.5e-13 Score=139.32 Aligned_cols=215 Identities=10% Similarity=0.000 Sum_probs=153.5
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--C----C----chHHHHH
Q 002975 492 FASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED--R----N----VISWTSM 561 (861)
Q Consensus 492 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~----~----~~~~~~l 561 (861)
+..+...+...|++++|...+..+++.. .+...+..+...|...|++++|.+.|++..+ | + ...|..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3444444555555555555555555544 4555666666666666666666666665542 1 1 4566777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcC
Q 002975 562 ITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSG 640 (861)
Q Consensus 562 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g 640 (861)
...|...|++++|+..|++..+ ..|+. ..+...|++++|...++.+.. ..| +...+..+...+.+.|
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhc
Confidence 7777777788888887777777 34553 234456677788887777763 233 3456677777888888
Q ss_pred CHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 641 SLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 641 ~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
++++|.+.++++. .+.+..+|..+...+...|+++.|+..++++++++|+++..+..++.+|...|++++|.+.++..
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8888888887763 34467888889999999999999999999999999999999999999999999999999998877
Q ss_pred Hh
Q 002975 719 KE 720 (861)
Q Consensus 719 ~~ 720 (861)
.+
T Consensus 234 ~~ 235 (258)
T 3uq3_A 234 RT 235 (258)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.57 E-value=4.7e-14 Score=139.02 Aligned_cols=193 Identities=13% Similarity=0.030 Sum_probs=154.4
Q ss_pred CCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHH
Q 002975 521 ESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAV 596 (861)
Q Consensus 521 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 596 (861)
+++...+..+...|.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.++ ..|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 55677888888899999999999999998764 3567888899999999999999999999998 4565 5678888
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCCCHHHHHH
Q 002975 597 LSACSHA-----------GLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMP-LSADVLVWRT 663 (861)
Q Consensus 597 l~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~~~~~~~ 663 (861)
..++... |++++|...|++..+. .| +...+..+..+|...|++++|++.++++. ...++..|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8889888 9999999999998843 45 45678888999999999999999998863 1277889999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 664 FLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 664 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
+..++...|++++|+..++++++++|+++..+..++.+|...|++++|.+.++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998887744
No 38
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.57 E-value=6.8e-13 Score=148.21 Aligned_cols=388 Identities=12% Similarity=0.009 Sum_probs=206.7
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCC-ccchHHHHHH
Q 002975 248 TVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLAL-DVCVGCSLVD 326 (861)
Q Consensus 248 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~ 326 (861)
...||.|...+...|++++|++.|++-.+. ..........+ ...+++.+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~----------------------------~~~~~~~~~~~~~~~~~~nla~ 102 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEEL----------------------------IQQEHADQAEIRSLVTWGNYAW 102 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------HHHHSGGGCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------------------HHhcCccccchHHHHHHHHHHH
Confidence 456888888888888888888888775431 00000000011 1234555666
Q ss_pred HHHhCCCCCCHHHHHHHHhcc-------CCC----CcccHHHHHHHHHhc--CCChHHHHHHHHHHhhCCCCCChh-hHH
Q 002975 327 MYAKCTVDGSVDDSRKVFDRM-------LDH----NVMSWTAIITGYVQS--GGRDKEAVKLFSDMIQGQVAPNHF-TFA 392 (861)
Q Consensus 327 ~y~~~g~~g~~~~A~~~~~~~-------~~~----~~~~~~~li~~~~~~--g~~~~~A~~l~~~m~~~g~~p~~~-t~~ 392 (861)
.|...|+ +++|...+++. ..+ ...+++.+..++... ++ +++|++.|++..+. .|+.. .+.
T Consensus 103 ~y~~~g~---~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-y~~A~~~~~kal~~--~p~~~~~~~ 176 (472)
T 4g1t_A 103 VYYHMGR---LSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQ-NERAKVCFEKALEK--KPKNPEFTS 176 (472)
T ss_dssp HHHHTTC---HHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTH-HHHHHHHHHHHHHH--STTCHHHHH
T ss_pred HHHHcCC---hHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHcccc-HHHHHHHHHHHHHh--CCCCHHHHH
Confidence 6666655 77776666544 221 123444444444443 34 78888888887763 45433 333
Q ss_pred HHHHH---hcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHH----cCCHHHHHHHHHhcC---CCCeehHHHHHH
Q 002975 393 SVLKA---CGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYAR----SGRMEDARKAFESLF---EKNLVSYNTMVD 462 (861)
Q Consensus 393 ~ll~a---~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~---~~~~~~~~~li~ 462 (861)
.+..+ +...++.+.|.+.+...++.. +.+..++..+...+.. .|+.++|.+.+++.. ..+...+..+..
T Consensus 177 ~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~ 255 (472)
T 4g1t_A 177 GLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAK 255 (472)
T ss_dssp HHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 33322 344566677777777777654 3334444444444433 355667777776652 234456777777
Q ss_pred HHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHH
Q 002975 463 AYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEA 542 (861)
Q Consensus 463 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 542 (861)
.|...|++++|+..|++..+.. +-+..++..+...+...+....+ .. ...........+..+.
T Consensus 256 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~ 318 (472)
T 4g1t_A 256 FYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMN---------LR-------ENGMYGKRKLLELIGH 318 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHH---------C-------------CHHHHHHHHHH
T ss_pred HHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhh---------HH-------HHHHHHHHHHHhhHHH
Confidence 7777777777777777776542 22334444443333221110000 00 0000011111233567
Q ss_pred HHHHHHhcc---CCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--HHHHHHHH-HHHhcCCHHHHHHHHHHH
Q 002975 543 AFQVFKEME---DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNG--ITYIAVLS-ACSHAGLISEGWKHFRSM 616 (861)
Q Consensus 543 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~-a~~~~g~~~~a~~~~~~m 616 (861)
|...|+... ..+..+|..+...|...|++++|+..|++.++....|.. ..+..+.. ...+.|+.++|+..|++.
T Consensus 319 A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~ka 398 (472)
T 4g1t_A 319 AVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG 398 (472)
T ss_dssp HHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777777665 345678899999999999999999999999985433322 12333333 345789999999999988
Q ss_pred HhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCch
Q 002975 617 YDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM-P-LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAA 694 (861)
Q Consensus 617 ~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 694 (861)
. .+.|+....... ++.+.+++++. . .+.++.+|..|+.++...|+.++|+..+++++++.|.+|.+
T Consensus 399 l---~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a 466 (472)
T 4g1t_A 399 V---KINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466 (472)
T ss_dssp H---HSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------------
T ss_pred H---hcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcH
Confidence 7 345654332222 23333444332 1 34467789999999999999999999999999999999887
Q ss_pred HHHHH
Q 002975 695 HILLS 699 (861)
Q Consensus 695 ~~~L~ 699 (861)
..-+|
T Consensus 467 ~~~~G 471 (472)
T 4g1t_A 467 SSWNG 471 (472)
T ss_dssp -----
T ss_pred hhcCC
Confidence 76654
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=2.8e-13 Score=138.99 Aligned_cols=241 Identities=10% Similarity=-0.004 Sum_probs=189.4
Q ss_pred hcCChhHHHHHHHHHhhcCCC---CCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHH
Q 002975 466 KNLNSEKAFELLHEIEDTGVG---TSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEA 542 (861)
Q Consensus 466 ~~g~~~~A~~l~~~m~~~g~~---p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 542 (861)
..|++++|+..|+++.+.... .+..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 356788888888888765321 235567777888888888888888888888875 5578889999999999999999
Q ss_pred HHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 002975 543 AFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDE 619 (861)
Q Consensus 543 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 619 (861)
|.+.|++..+ .+...|..+...|...|++++|+..|+++.+ ..|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999998773 4678899999999999999999999999998 5576555555556667789999999999887744
Q ss_pred cCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCc
Q 002975 620 HGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSAD-----VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPA 693 (861)
Q Consensus 620 ~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 693 (861)
. +++...+ .++..+...++.++|.+.+++.. ..|+ ..+|..+...+...|+.+.|...++++++++|++..
T Consensus 174 ~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 S--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp S--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred C--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 3 2333334 37777888888999999998863 2221 578888999999999999999999999999998855
Q ss_pred hHHHHHHHHHHcCChhHHHHHH
Q 002975 694 AHILLSNLYASAGHWEYVANIR 715 (861)
Q Consensus 694 ~~~~L~~~y~~~g~~~~a~~~~ 715 (861)
.+ +.++...|++++|.+.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 44 66788889999987654
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.54 E-value=3.3e-13 Score=136.85 Aligned_cols=234 Identities=9% Similarity=0.014 Sum_probs=184.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCC--CCc----hhHHHH
Q 002975 456 SYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGF--ESN----HCIYNA 529 (861)
Q Consensus 456 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 529 (861)
.|..+...+...|++++|+..|++..+.. .+...+..+...+...|++++|...+..+.+... .++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 46667777778888888888888887766 6777777888888888888888888887766431 111 577888
Q ss_pred HHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHH
Q 002975 530 LISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISE 608 (861)
Q Consensus 530 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 608 (861)
+...|.+.|++++|...|++..+.+.. ...+...|++++|+..++++.. ..|+ ...+..+...+...|++++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHH
Confidence 889999999999999999887642211 2456677889999999999988 4564 5578888889999999999
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 002975 609 GWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILE 686 (861)
Q Consensus 609 a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 686 (861)
|...|+.+.+.. +.+...+..+...|.+.|++++|++.++++. .+.+..+|..+..++...|+.+.|...++++++
T Consensus 158 A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 158 AVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999988433 2356778889999999999999999998873 344578899999999999999999999999999
Q ss_pred cC------CCCCchHHHHHH
Q 002975 687 QD------PQDPAAHILLSN 700 (861)
Q Consensus 687 ~~------p~~~~~~~~L~~ 700 (861)
++ |++...+..|..
T Consensus 236 ~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 236 KDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHTTTTHHHHHHHHHH
T ss_pred hChhhcCCCchHHHHHHHHH
Confidence 99 877776666654
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=6.4e-12 Score=128.61 Aligned_cols=252 Identities=13% Similarity=0.031 Sum_probs=159.9
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCC--HHHHHHHHHHhh
Q 002975 426 GNSLISMYARSGRMEDARKAFESLFE---KNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTS--AYTFASLLSGAS 500 (861)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~ 500 (861)
.......+.+.|++++|...|++..+ .+...|..+...|...|++++|++.|++....+..|+ ..+|..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 34455666777777777777776632 2344677777778888888888888887776332221 234666666777
Q ss_pred cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHH
Q 002975 501 SIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEI 577 (861)
Q Consensus 501 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 577 (861)
..|++++|...+..+.+.. +.+..++..+...|.+.|++++|.+.|++..+ .+...|..+...+...+++++|+..
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776654 44556777777777777777777777777663 2345566665233334577777777
Q ss_pred HHHHHHcCCCCC-hHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC
Q 002975 578 FYKMLADGIKPN-GITYIAVLSACSHAGL---ISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP 653 (861)
Q Consensus 578 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~ 653 (861)
|+++.+ ..|+ ...+..+..++...|. +++|...|+.+.+...-.|+.. -
T Consensus 165 ~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~------------------------ 217 (272)
T 3u4t_A 165 FVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-K------------------------ 217 (272)
T ss_dssp HHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-H------------------------
T ss_pred HHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-h------------------------
Confidence 777777 3454 4455555666655555 5556665555542221112110 0
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC
Q 002975 654 LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAG 706 (861)
Q Consensus 654 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g 706 (861)
..-..+|..+...+...|+.+.|...++++++++|+++.+...+..+....+
T Consensus 218 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 218 -DELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred -HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 0012467778888999999999999999999999999888888777665544
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.47 E-value=2e-12 Score=138.08 Aligned_cols=244 Identities=11% Similarity=0.104 Sum_probs=199.8
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccc-hHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 002975 455 VSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGA-IGKGEQIHARIIKSGFESNHCIYNALISM 533 (861)
Q Consensus 455 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 533 (861)
..|+.+...+.+.|++++|++.|++..... +-+...|..+..++...|+ +++|...++.+++.. +.+...|+.+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 457777888888899999999999888653 3356677888888888886 999999999998876 5678889999999
Q ss_pred HHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHh-cCCHHH
Q 002975 534 YSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSH-AGLISE 608 (861)
Q Consensus 534 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~-~g~~~~ 608 (861)
|.+.|++++|+..|+++.+ .+...|..+..++...|++++|+..|+++++ +.|+ ...|..+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcchH
Confidence 9999999999999998873 4678999999999999999999999999999 5565 6688888888888 666577
Q ss_pred H-----HHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHhC-------
Q 002975 609 G-----WKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSG--SLTEALEFIRSMPLSA-DVLVWRTFLGACRVHG------- 672 (861)
Q Consensus 609 a-----~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g--~~~eA~~~~~~~~~~p-~~~~~~~ll~~~~~~g------- 672 (861)
| +..|++..+ +.| +...|..+..+|.+.| ++++|+++++++...| +..++..|+..+...|
T Consensus 254 A~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 7 477887773 345 4567888888888888 6899999998875445 4678888888888764
Q ss_pred -C-HHHHHHHHHHH-hccCCCCCchHHHHHHHHHHc
Q 002975 673 -D-TELGKHAAEMI-LEQDPQDPAAHILLSNLYASA 705 (861)
Q Consensus 673 -~-~~~a~~~~~~~-~~~~p~~~~~~~~L~~~y~~~ 705 (861)
+ .+.|+.+++++ .+++|.....|..++..+...
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58999999999 999999999998888766653
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.47 E-value=4.1e-12 Score=128.37 Aligned_cols=196 Identities=12% Similarity=0.009 Sum_probs=150.8
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 002975 524 HCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSAC 600 (861)
Q Consensus 524 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 600 (861)
...+..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45666777777788888888888877652 355677777888888888888888888887742 22456777777888
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHH
Q 002975 601 SHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELG 677 (861)
Q Consensus 601 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a 677 (861)
...|++++|..+|+.+.+ .+..| +...+..+...|.+.|++++|.+.++++. .+.+..+|..+...+...|+.+.|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888773 33444 34567777788888888888888887763 233577888888888888999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 678 KHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 678 ~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
...++++++..|++...+..++.+|...|++++|.+.++.+.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999998888888888888888999999999998888887663
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.46 E-value=6.5e-12 Score=124.19 Aligned_cols=197 Identities=9% Similarity=-0.007 Sum_probs=145.0
Q ss_pred CchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 002975 522 SNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLS 598 (861)
Q Consensus 522 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 598 (861)
.+...+..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3455667777777777788777777776652 345677777777788888888888888877742 224556777777
Q ss_pred HHHhc-CCHHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCH
Q 002975 599 ACSHA-GLISEGWKHFRSMYDEHGIVQR-MEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDT 674 (861)
Q Consensus 599 a~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~ 674 (861)
.+... |++++|..+++.+.+ .+..|+ ...+..+...+.+.|++++|++.++++. .+.+...|..+...+...|+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 77788 888888888887774 323333 4566777778888888888888877653 233467777888888888888
Q ss_pred HHHHHHHHHHhccCC-CCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 675 ELGKHAAEMILEQDP-QDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 675 ~~a~~~~~~~~~~~p-~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+.|...++++++..| +++..+..++.++...|++++|...++.+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 888888888888888 8888888888888888888888888877764
No 45
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.46 E-value=4.5e-12 Score=139.88 Aligned_cols=343 Identities=10% Similarity=0.044 Sum_probs=202.8
Q ss_pred HHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCCh---HHHHHHHHHHHHcCCCCCcchhhHHHHHHH
Q 002975 358 IITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDS---NVAEQVYTHAVKRGRALDDCVGNSLISMYA 434 (861)
Q Consensus 358 li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~~a~~i~~~~~~~g~~~~~~~~~~li~~~~ 434 (861)
+...+.+.|+ +++|+++|++..+.|- ...+..+-..+...|+. ++|.+.+....+. +...+..|..++.
T Consensus 9 la~~~~~~g~-~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 9 LANEALKRGD-TVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHhCCC-HHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 4556667777 8888888888877652 22333333444455666 7888888777654 4455556666454
Q ss_pred HcC-----CHHHHHHHHHhcCCC-CeehHHHHHHHHHhcCChh---HHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccch
Q 002975 435 RSG-----RMEDARKAFESLFEK-NLVSYNTMVDAYAKNLNSE---KAFELLHEIEDTGVGTSAYTFASLLSGASSIGAI 505 (861)
Q Consensus 435 ~~g-----~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 505 (861)
..+ +.++|...|++..++ +...+..|...|...+..+ ++.+.+......|. ......+...+...+.+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCc
Confidence 444 677888888776443 4456777777777665433 34444444444443 33444555555555544
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC---CHHHHHHHHHhccC---CCchHHHHHHHHHHhc----CChHHHH
Q 002975 506 GKGEQIHARIIKSGFESNHCIYNALISMYSRCA---NVEAAFQVFKEMED---RNVISWTSMITGFAKH----GFAARAL 575 (861)
Q Consensus 506 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~ 575 (861)
+++......+.+.-...++..+..|..+|.+.| +.++|.+.|+...+ ++...+..|...|... +++++|+
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 433333332322222334447778888888888 78888888887653 2333346666666544 6788888
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcC-----CHHHHHH
Q 002975 576 EIFYKMLADGIKPNGITYIAVLSA-C--SHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSG-----SLTEALE 647 (861)
Q Consensus 576 ~~~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g-----~~~eA~~ 647 (861)
.+|++.. .| +...+..+... + ...+++++|..+|++.. +.| +...+..|..+|. .| ++++|++
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa-~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGR-AAD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 8888876 32 34455556555 3 45778888888888876 333 5556666766666 45 8888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH----cCChhHHHHHHHHHH
Q 002975 648 FIRSMPLSADVLVWRTFLGACRV----HGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS----AGHWEYVANIRKRMK 719 (861)
Q Consensus 648 ~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~----~g~~~~a~~~~~~m~ 719 (861)
+|++.. ..++..+..|...|.. ..|.++|...++++.+ +.++.+...|+.+|.. ..+.++|...+++..
T Consensus 309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 888887 5567777777766654 2388888888888776 4567778888888875 457888888888777
Q ss_pred hCCC
Q 002975 720 ERNL 723 (861)
Q Consensus 720 ~~~~ 723 (861)
+.|.
T Consensus 386 ~~g~ 389 (452)
T 3e4b_A 386 AQDT 389 (452)
T ss_dssp TTCC
T ss_pred HCCC
Confidence 6554
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.46 E-value=2.3e-11 Score=124.66 Aligned_cols=214 Identities=8% Similarity=-0.051 Sum_probs=121.1
Q ss_pred HHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc----cCCHHHHHHHHHhccC-CCchHHHHHHHHHHh----
Q 002975 497 SGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSR----CANVEAAFQVFKEMED-RNVISWTSMITGFAK---- 567 (861)
Q Consensus 497 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~---- 567 (861)
..+...|++++|.+.+....+. .+...+..+..+|.. .+++++|...|++..+ .+..++..+...|..
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~ 90 (273)
T 1ouv_A 14 AKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGV 90 (273)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCc
Confidence 3333334444444444444331 123344444555555 5555555555554432 244455555555555
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhh----c
Q 002975 568 HGFAARALEIFYKMLADGIKPNGITYIAVLSACSH----AGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGR----S 639 (861)
Q Consensus 568 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r----~ 639 (861)
.|++++|+..|++..+.+ +...+..+...+.. .+++++|..+|++..+ .+ +...+..+..+|.+ .
T Consensus 91 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~ 163 (273)
T 1ouv_A 91 SQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-LN---DGDGCTILGSLYDAGRGTP 163 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSC
T ss_pred ccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHHcCCCCC
Confidence 566666666666665543 44455555555555 5666666666665552 22 33444555555555 6
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH----cCChhHH
Q 002975 640 GSLTEALEFIRSMPLSADVLVWRTFLGACRV----HGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS----AGHWEYV 711 (861)
Q Consensus 640 g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~----~g~~~~a 711 (861)
+++++|++.+++.....++..+..+...+.. .++.++|...++++++.+| +..+..|+.+|.. .|++++|
T Consensus 164 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A 241 (273)
T 1ouv_A 164 KDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQA 241 (273)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHH
Confidence 6666666666655322345566666666666 6777777777777777655 5667777777777 7777777
Q ss_pred HHHHHHHHhCC
Q 002975 712 ANIRKRMKERN 722 (861)
Q Consensus 712 ~~~~~~m~~~~ 722 (861)
.+.+++..+.|
T Consensus 242 ~~~~~~a~~~~ 252 (273)
T 1ouv_A 242 IENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHcC
Confidence 77777665543
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.44 E-value=1.9e-12 Score=129.91 Aligned_cols=178 Identities=12% Similarity=0.070 Sum_probs=96.1
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 002975 524 HCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSAC 600 (861)
Q Consensus 524 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 600 (861)
...+..+...|.+.|++++|.+.|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 135 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVL 135 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34444444555555555555555554431 234455555555555556666666665555532 12344455555555
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHH
Q 002975 601 SHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGK 678 (861)
Q Consensus 601 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~ 678 (861)
...|++++|..+++.+.+.. +.+...+..+...+.+.|++++|.+.++++. .+.+..+|..+...+...|+.+.|.
T Consensus 136 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 213 (243)
T 2q7f_A 136 VKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKAL 213 (243)
T ss_dssp HHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHH
T ss_pred HHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHH
Confidence 55666666666665555221 1233445555555556666666665555542 2234556666777777777777777
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHH
Q 002975 679 HAAEMILEQDPQDPAAHILLSNLYAS 704 (861)
Q Consensus 679 ~~~~~~~~~~p~~~~~~~~L~~~y~~ 704 (861)
..++++++++|+++..+..++.+...
T Consensus 214 ~~~~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 214 EMLDKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHTC----
T ss_pred HHHHHHHccCcchHHHHHHHHHHHhh
Confidence 77777777777776666665554433
No 48
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.44 E-value=1.3e-11 Score=136.10 Aligned_cols=349 Identities=11% Similarity=0.055 Sum_probs=171.6
Q ss_pred cCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcC-----CChH
Q 002975 296 LELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSG-----GRDK 370 (861)
Q Consensus 296 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~ 370 (861)
.|++++|.+++..+.+.| +...+..|-.+|...|+..+.++|...|++..+.+...+..+...+...+ + .+
T Consensus 16 ~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~-~~ 91 (452)
T 3e4b_A 16 RGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAE-HH 91 (452)
T ss_dssp HHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHH-HH
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcC-HH
Confidence 344444444444444443 12222333334444444111267777776665555555655555444444 3 56
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHhcccCCh---HHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcC----CHHHHH
Q 002975 371 EAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDS---NVAEQVYTHAVKRGRALDDCVGNSLISMYARSG----RMEDAR 443 (861)
Q Consensus 371 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~ 443 (861)
+|+..|++..+.|... .+..+...+...+.. ..+.+.+......| +......|..+|...+ ..+++.
T Consensus 92 ~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 92 EAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred HHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 6777777766654322 333333333322221 12223333333222 2233334444444444 223333
Q ss_pred HHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhccc---chHHHHHHHHHHHHhCC
Q 002975 444 KAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIG---AIGKGEQIHARIIKSGF 520 (861)
Q Consensus 444 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~---~~~~a~~~~~~~~~~~~ 520 (861)
.+++.....++..+. .+...+...| +.++|.+.+....+.|
T Consensus 166 ~~~~~a~~~~~~a~~-----------------------------------~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g- 209 (452)
T 3e4b_A 166 RICKAALNTTDICYV-----------------------------------ELATVYQKKQQPEQQAELLKQMEAGVSRG- 209 (452)
T ss_dssp HHHHHHTTTCTTHHH-----------------------------------HHHHHHHHTTCHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHcCCHHHHH-----------------------------------HHHHHHHHcCCcccHHHHHHHHHHHHHCC-
Confidence 333333333333444 4444444444 5555555555555555
Q ss_pred CCchhHHHHHHHHHHcc----CCHHHHHHHHHhccCCCchHHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCCChHHH
Q 002975 521 ESNHCIYNALISMYSRC----ANVEAAFQVFKEMEDRNVISWTSMITG-F--AKHGFAARALEIFYKMLADGIKPNGITY 593 (861)
Q Consensus 521 ~~~~~~~~~li~~y~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 593 (861)
+++...+..|..+|... +++++|...|+.....+...+..|... | ...|++++|+.+|++..+.| +...+
T Consensus 210 ~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~ 286 (452)
T 3e4b_A 210 TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAE 286 (452)
T ss_dssp CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 34444445556666444 577777777776663355666666665 3 35678888888888877765 45566
Q ss_pred HHHHHHHHhcC-----CHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhh----cCCHHHHHHHHHhCCCCCCHHHHHHH
Q 002975 594 IAVLSACSHAG-----LISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGR----SGSLTEALEFIRSMPLSADVLVWRTF 664 (861)
Q Consensus 594 ~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r----~g~~~eA~~~~~~~~~~p~~~~~~~l 664 (861)
..+...|. .| ++++|..+|+... .-+...+..|..+|.. ..++++|.++|++....-++.....|
T Consensus 287 ~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~L 360 (452)
T 3e4b_A 287 LLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAI 360 (452)
T ss_dssp HHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHH
Confidence 66666665 45 7888888887654 3345566666666655 34788888888876433344455556
Q ss_pred HHHHHH----hCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 002975 665 LGACRV----HGDTELGKHAAEMILEQDPQDPAAHILLSNL 701 (861)
Q Consensus 665 l~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 701 (861)
...|.. .+|.++|...++++.+..+. .+...|..+
T Consensus 361 g~~y~~G~g~~~d~~~A~~~~~~A~~~g~~--~a~~~l~~l 399 (452)
T 3e4b_A 361 AQLFSQGKGTKPDPLNAYVFSQLAKAQDTP--EANDLATQL 399 (452)
T ss_dssp HHHHHSCTTBCCCHHHHHHHHHHHHTTCCH--HHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHH
Confidence 555543 34888888888888887653 334444444
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.44 E-value=4.4e-12 Score=135.42 Aligned_cols=224 Identities=9% Similarity=0.073 Sum_probs=192.2
Q ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCC-HHHHHHHHHhccC---CCchHHHHHHHHH
Q 002975 490 YTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCAN-VEAAFQVFKEMED---RNVISWTSMITGF 565 (861)
Q Consensus 490 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 565 (861)
..|..+...+...|++++|.+.+..+++.. +.+..+|+.+..+|.+.|+ +++|+..|+++.. .+...|+.+...+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456677778888999999999999999986 6678899999999999997 9999999998873 4678999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhh-cCCH
Q 002975 566 AKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGR-SGSL 642 (861)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r-~g~~ 642 (861)
...|++++|+..|+++++ +.|+ ...|..+..++...|++++|+..|+++.+. .| +...|..+..+|.+ .|..
T Consensus 177 ~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999 5665 678999999999999999999999999843 44 56788888899988 6765
Q ss_pred HHH-----HHHHHhCC-CCC-CHHHHHHHHHHHHHhC--CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC-------
Q 002975 643 TEA-----LEFIRSMP-LSA-DVLVWRTFLGACRVHG--DTELGKHAAEMILEQDPQDPAAHILLSNLYASAG------- 706 (861)
Q Consensus 643 ~eA-----~~~~~~~~-~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g------- 706 (861)
++| ++.++++. ..| +...|..+...+...| +.+.|+..++++ +.+|+++.++..|+.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 777 47777652 344 6789999999998888 689999999998 999999999999999999985
Q ss_pred --ChhHHHHHHHHH-Hh
Q 002975 707 --HWEYVANIRKRM-KE 720 (861)
Q Consensus 707 --~~~~a~~~~~~m-~~ 720 (861)
..++|.++++.+ .+
T Consensus 331 ~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 331 EDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 358899999987 44
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.44 E-value=1.7e-11 Score=123.83 Aligned_cols=205 Identities=12% Similarity=0.030 Sum_probs=138.3
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 002975 455 VSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMY 534 (861)
Q Consensus 455 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 534 (861)
..|..+...|...|++++|++.|+++... . +.+...+..+...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----------------------------------~-~~~~~~~~~la~~~ 81 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEI-----------------------------------D-PSSADAHAALAVVF 81 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHH-----------------------------------C-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc-----------------------------------C-CChHHHHHHHHHHH
Confidence 44555556666666666666666665543 2 23445555666666
Q ss_pred HccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHH
Q 002975 535 SRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGW 610 (861)
Q Consensus 535 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~ 610 (861)
.+.|++++|.+.|+++.+ .+...|..+...|...|++++|+.+|+++.+.+..|+ ...+..+..++...|++++|.
T Consensus 82 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 161 (252)
T 2ho1_A 82 QTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAK 161 (252)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 666666666666665542 2455666667777777777777777777766333443 446666777777777777777
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Q 002975 611 KHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQD 688 (861)
Q Consensus 611 ~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 688 (861)
.+|+.+.+.. +.+...+..+..+|.+.|++++|.+.++++. .+.+...|..+...+...|+.+.|...+++++++.
T Consensus 162 ~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 162 EYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 7777776332 2235667777777888888888888877752 33456778888888999999999999999999999
Q ss_pred CCCCchHHH
Q 002975 689 PQDPAAHIL 697 (861)
Q Consensus 689 p~~~~~~~~ 697 (861)
|+++.....
T Consensus 240 p~~~~~~~~ 248 (252)
T 2ho1_A 240 PGSLEYQEF 248 (252)
T ss_dssp TTSHHHHHH
T ss_pred CCCHHHHHH
Confidence 988766543
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.44 E-value=1.2e-11 Score=122.14 Aligned_cols=206 Identities=11% Similarity=0.029 Sum_probs=140.2
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHh
Q 002975 491 TFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAK 567 (861)
Q Consensus 491 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 567 (861)
.+..+...+...|++++|.+.+..+.+.. +.+...+..+...|...|++++|.+.|+++.+ .+..+|..+...|..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 33344444444455555555554444433 33455666666777777777777777766542 345667777777777
Q ss_pred c-CChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHH
Q 002975 568 H-GFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEA 645 (861)
Q Consensus 568 ~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA 645 (861)
. |++++|+..|+++.+.+..|+ ...+..+..++...|++++|..+|+.+.+.. +.+...+..+..++.+.|++++|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHH
Confidence 7 788888888877777333343 4566777777788888888888887776332 22356677777888888888888
Q ss_pred HHHHHhCC--CC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 002975 646 LEFIRSMP--LS-ADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLS 699 (861)
Q Consensus 646 ~~~~~~~~--~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~ 699 (861)
.+.++++. .+ .+...|..+...+...|+.+.+...++.+.+.+|+++.....+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVLT 223 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHhc
Confidence 88887752 23 46667777777788999999999999999999999887766553
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.43 E-value=2.2e-11 Score=124.72 Aligned_cols=226 Identities=10% Similarity=-0.039 Sum_probs=177.4
Q ss_pred CeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhc----ccchHHHHHHHHHHHHhCCCCchhHHH
Q 002975 453 NLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASS----IGAIGKGEQIHARIIKSGFESNHCIYN 528 (861)
Q Consensus 453 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 528 (861)
+..++..+...|...|++++|++.|++..+. -+..++..+...+.. .++.++|...+.+..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3445666667777777888888888777762 344566667777777 788888888888887765 667777
Q ss_pred HHHHHHHc----cCCHHHHHHHHHhccC-CCchHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 002975 529 ALISMYSR----CANVEAAFQVFKEMED-RNVISWTSMITGFAK----HGFAARALEIFYKMLADGIKPNGITYIAVLSA 599 (861)
Q Consensus 529 ~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 599 (861)
.+..+|.. .+++++|...|++..+ .+..++..+...|.. .|++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 88888888 8899999988887764 466788888888888 899999999999998865 45667777778
Q ss_pred HHh----cCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-
Q 002975 600 CSH----AGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGR----SGSLTEALEFIRSMPLSADVLVWRTFLGACRV- 670 (861)
Q Consensus 600 ~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r----~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~- 670 (861)
+.. .+++++|..+|+...+. .+...+..+..+|.+ .+++++|++.+++.....+...+..|...+..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 877 88999999999988743 245677778888888 99999999999887433347778888888888
Q ss_pred ---hCCHHHHHHHHHHHhccCCCC
Q 002975 671 ---HGDTELGKHAAEMILEQDPQD 691 (861)
Q Consensus 671 ---~g~~~~a~~~~~~~~~~~p~~ 691 (861)
.++.++|...++++++++|++
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHH
Confidence 899999999999999999864
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.41 E-value=4.9e-12 Score=126.87 Aligned_cols=196 Identities=14% Similarity=0.102 Sum_probs=154.7
Q ss_pred CchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 002975 522 SNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLS 598 (861)
Q Consensus 522 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 598 (861)
.....+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4556777888889999999999999998864 356788899999999999999999999999853 235678888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHH
Q 002975 599 ACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTEL 676 (861)
Q Consensus 599 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~ 676 (861)
.+...|++++|..+++.+.+.. +.+...+..+...+.+.|++++|.+.++++. .+.+..+|..+...+...|+.+.
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998543 3356778889999999999999999999873 34467889999999999999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 677 GKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 677 a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
|+..++++++.+|+++..+..++.+|...|++++|.+.++.+.+
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999998876
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.41 E-value=3.5e-12 Score=139.51 Aligned_cols=261 Identities=10% Similarity=0.003 Sum_probs=178.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhcCCCCCH----HHHHHHHHHhhcccchHHHHHHHHHHHHh----C-CCCchhHHHH
Q 002975 459 TMVDAYAKNLNSEKAFELLHEIEDTGVGTSA----YTFASLLSGASSIGAIGKGEQIHARIIKS----G-FESNHCIYNA 529 (861)
Q Consensus 459 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 529 (861)
.+...+...|++++|+..|++....... +. ..+..+...+...|++++|...+..+++. + .+....++..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3444555666666666666666554211 22 34555555666666666666666655432 1 1223456677
Q ss_pred HHHHHHccCCHHHHHHHHHhccC-----C----CchHHHHHHHHHHhcCC-----------------hHHHHHHHHHHHH
Q 002975 530 LISMYSRCANVEAAFQVFKEMED-----R----NVISWTSMITGFAKHGF-----------------AARALEIFYKMLA 583 (861)
Q Consensus 530 li~~y~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~ 583 (861)
+...|...|++++|...|++..+ . ...+|..+...|...|+ +++|+..+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 77778888888888887776552 1 23467777788888888 8888888877655
Q ss_pred c----CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC----hhHHHHHHHHhhhcCCHHHHHHHHHhCC-
Q 002975 584 D----GIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR----MEHYACMVDLLGRSGSLTEALEFIRSMP- 653 (861)
Q Consensus 584 ~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~r~g~~~eA~~~~~~~~- 653 (861)
. +-.|. ..++..+...+...|++++|..+|++..+...-.++ ...+..+..+|...|++++|.+.++++.
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 21222 346777888888888888888888887643221122 2367778888888999999888887652
Q ss_pred ---CCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 654 ---LSA----DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD------PAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 654 ---~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
... ...+|..+...+...|+.+.|...+++++++.++. ...+..++.+|...|++++|.+.++...+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 111 14577788888999999999999999999875543 34788999999999999999999887765
No 55
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.41 E-value=1.5e-11 Score=125.77 Aligned_cols=219 Identities=10% Similarity=-0.016 Sum_probs=154.7
Q ss_pred HHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--CCc----hHHHHHHHHHHhcC
Q 002975 496 LSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED--RNV----ISWTSMITGFAKHG 569 (861)
Q Consensus 496 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g 569 (861)
...+...|++++|...+..+++.. +.+...+..+...|...|++++|.+.|++..+ ++. .+|..+...|...|
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 334445555555555555555443 33455666777777777777777777776653 222 23777778888888
Q ss_pred ChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHH
Q 002975 570 FAARALEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALE 647 (861)
Q Consensus 570 ~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~ 647 (861)
++++|+..|++..+. .| +..++..+...+...|++++|...|+...+ +.| +...+..+...+...+++++|.+
T Consensus 89 ~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp CHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888773 34 356777788888888888888888877762 244 34556666634444558888888
Q ss_pred HHHhCC-CCC-CHHHHHHHHHHHHHhCC---HHHHHHHHHHHhccC---CCC-----CchHHHHHHHHHHcCChhHHHHH
Q 002975 648 FIRSMP-LSA-DVLVWRTFLGACRVHGD---TELGKHAAEMILEQD---PQD-----PAAHILLSNLYASAGHWEYVANI 714 (861)
Q Consensus 648 ~~~~~~-~~p-~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~L~~~y~~~g~~~~a~~~ 714 (861)
.++++. ..| +...|..+...+...|+ .+.|+..+++++++. |+. ...|..|+.+|...|++++|.+.
T Consensus 164 ~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 164 SFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 887763 333 46777788888888888 888999999998875 442 25788899999999999999999
Q ss_pred HHHHHh
Q 002975 715 RKRMKE 720 (861)
Q Consensus 715 ~~~m~~ 720 (861)
+++..+
T Consensus 244 ~~~al~ 249 (272)
T 3u4t_A 244 WKNILA 249 (272)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998876
No 56
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.40 E-value=2.3e-11 Score=119.61 Aligned_cols=189 Identities=13% Similarity=0.032 Sum_probs=88.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 002975 456 SYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYS 535 (861)
Q Consensus 456 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 535 (861)
.|..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|...++.+++.. +.+...+..+..+|.
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 44444445555555555555555544331 2233344444444444444444444444444443 333444455555555
Q ss_pred cc-----------CCHHHHHHHHHhccC--C-CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Q 002975 536 RC-----------ANVEAAFQVFKEMED--R-NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACS 601 (861)
Q Consensus 536 ~~-----------g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 601 (861)
+. |++++|...|++..+ | +...|..+...|...|++++|+..|++.++.. .+...+..+..++.
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~ 162 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYL 162 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHH
Confidence 54 555555555555442 2 34455555555556666666666666655544 44455555555566
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHh
Q 002975 602 HAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRS 651 (861)
Q Consensus 602 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~ 651 (861)
..|++++|+..|+...+. .| +...+..+..++.+.|++++|++.+++
T Consensus 163 ~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 163 SMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC-------------
T ss_pred HcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 666666666666555522 22 334445555555555555555555544
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.40 E-value=8.1e-12 Score=136.13 Aligned_cols=263 Identities=11% Similarity=0.058 Sum_probs=163.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhcCCCCC----HHHHHHHHHHhhcccchHHHHHHHHHHHHh----CCC-CchhHH
Q 002975 457 YNTMVDAYAKNLNSEKAFELLHEIEDTGVGTS----AYTFASLLSGASSIGAIGKGEQIHARIIKS----GFE-SNHCIY 527 (861)
Q Consensus 457 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 527 (861)
+......+...|++++|+..|++...... .+ ...+..+...+...|++++|...+..+.+. +.. ....++
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 33444455555555555555555554321 11 134445555555556666665555554322 111 124456
Q ss_pred HHHHHHHHccCCHHHHHHHHHhccC-----CC----chHHHHHHHHHHhcCC--------------------hHHHHHHH
Q 002975 528 NALISMYSRCANVEAAFQVFKEMED-----RN----VISWTSMITGFAKHGF--------------------AARALEIF 578 (861)
Q Consensus 528 ~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~ 578 (861)
..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|+..+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 6667777777777777777766542 22 3366677777777777 77777777
Q ss_pred HHHHHc----CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC----hhHHHHHHHHhhhcCCHHHHHHHH
Q 002975 579 YKMLAD----GIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR----MEHYACMVDLLGRSGSLTEALEFI 649 (861)
Q Consensus 579 ~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~r~g~~~eA~~~~ 649 (861)
++..+. +-.|. ..++..+...+...|++++|..+++...+...-.++ ...+..+..+|.+.|++++|.+.+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 766542 11222 235667777777888888888887777643222222 235667777888888888888877
Q ss_pred HhCC----CCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHHcCChhHHHHHH
Q 002975 650 RSMP----LSAD----VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD------PAAHILLSNLYASAGHWEYVANIR 715 (861)
Q Consensus 650 ~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~L~~~y~~~g~~~~a~~~~ 715 (861)
++.. ..++ ..++..+...+...|+++.|...+++++++.+.. ...+..++.+|...|++++|.+.+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7652 1112 4567777788888888888888888888775543 456778888888888888888887
Q ss_pred HHHHh
Q 002975 716 KRMKE 720 (861)
Q Consensus 716 ~~m~~ 720 (861)
+...+
T Consensus 331 ~~al~ 335 (406)
T 3sf4_A 331 EKHLE 335 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76644
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.39 E-value=2e-11 Score=128.96 Aligned_cols=260 Identities=12% Similarity=0.062 Sum_probs=179.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCCCCC----HHHHHHHHHHhhcccchHHHHHHHHHHHHh----CCC-CchhHHHHH
Q 002975 460 MVDAYAKNLNSEKAFELLHEIEDTGVGTS----AYTFASLLSGASSIGAIGKGEQIHARIIKS----GFE-SNHCIYNAL 530 (861)
Q Consensus 460 li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l 530 (861)
....+...|++++|+..|+++...... + ...+..+...+...|++++|.+.+..+.+. +.. ....++..+
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 344555666666666666666554211 2 234555556666666666666666654332 211 224566777
Q ss_pred HHHHHccCCHHHHHHHHHhccC-----CC----chHHHHHHHHHHhcCC--------------------hHHHHHHHHHH
Q 002975 531 ISMYSRCANVEAAFQVFKEMED-----RN----VISWTSMITGFAKHGF--------------------AARALEIFYKM 581 (861)
Q Consensus 531 i~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m 581 (861)
...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|+..+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 7888888888888888876652 22 2367777788888888 88888888776
Q ss_pred HHc----CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC----hhHHHHHHHHhhhcCCHHHHHHHHHhC
Q 002975 582 LAD----GIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR----MEHYACMVDLLGRSGSLTEALEFIRSM 652 (861)
Q Consensus 582 ~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~r~g~~~eA~~~~~~~ 652 (861)
.+. +..|. ..++..+...+...|++++|..+++...+...-.++ ...+..+...+.+.|++++|.+.+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 542 21222 346777788888889999999888887643221122 236777888888999999998888775
Q ss_pred C----CCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 653 P----LSAD----VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD------PAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 653 ~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
. ..++ ..++..+...+...|+.+.|...+++++++.|.. ...+..++.+|...|++++|.+.+++.
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 2 1122 4577788888999999999999999999876543 347889999999999999999999887
Q ss_pred Hh
Q 002975 719 KE 720 (861)
Q Consensus 719 ~~ 720 (861)
.+
T Consensus 330 ~~ 331 (338)
T 3ro2_A 330 LE 331 (338)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.39 E-value=3.2e-12 Score=142.00 Aligned_cols=207 Identities=9% Similarity=-0.014 Sum_probs=165.4
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCH-HHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHH
Q 002975 505 IGKGEQIHARIIKSGFESNHCIYNALISMYSRCANV-EAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYK 580 (861)
Q Consensus 505 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 580 (861)
++++.+.+....+.. +.+...+..+...|...|++ ++|++.|++..+ .+...|..+...|...|++++|+..|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334444444433322 34667777778888888888 888888887652 3467888888888888888888888888
Q ss_pred HHHcCCCCChHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhc--------CCH
Q 002975 581 MLADGIKPNGITYIAVLSACSHA---------GLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRS--------GSL 642 (861)
Q Consensus 581 m~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~--------g~~ 642 (861)
.++ ..|+...+..+..++... |++++|...|++..+. .| +...|..+..+|.+. |++
T Consensus 163 al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 163 ALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 888 567777888888888888 8889999988888743 34 456777888888888 889
Q ss_pred HHHHHHHHhCC-CCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHH
Q 002975 643 TEALEFIRSMP-LSA----DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKR 717 (861)
Q Consensus 643 ~eA~~~~~~~~-~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~ 717 (861)
++|++.++++. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.++...|++++|.+.+.+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999998873 344 7889999999999999999999999999999999999999999999999999999875543
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.38 E-value=2.8e-11 Score=115.56 Aligned_cols=164 Identities=13% Similarity=0.071 Sum_probs=124.7
Q ss_pred CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHH
Q 002975 554 NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACM 632 (861)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 632 (861)
+...|..+...|...|++++|++.|++.++ ..|+ ..++..+..++.+.|++++|...+....... +.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHH
Confidence 445677777777777777777777777777 4454 4567777777777777777777777766322 2234455566
Q ss_pred HHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhH
Q 002975 633 VDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEY 710 (861)
Q Consensus 633 ~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~ 710 (861)
...+...+++++|.+.+++.. .+.+...|..+...+...|++++|+..++++++++|+++.++..++.+|...|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 677777788888877777653 334577888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 002975 711 VANIRKRMKER 721 (861)
Q Consensus 711 a~~~~~~m~~~ 721 (861)
|.+.+++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99998877653
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.37 E-value=7.3e-12 Score=136.51 Aligned_cols=290 Identities=12% Similarity=0.009 Sum_probs=169.9
Q ss_pred hHHHHHHHhcccCChHHHHHHHHHHHHcCCCCC---cchhhHHHHHHHHcCCHHHHHHHHHhcCC-----C----CeehH
Q 002975 390 TFASVLKACGNLLDSNVAEQVYTHAVKRGRALD---DCVGNSLISMYARSGRMEDARKAFESLFE-----K----NLVSY 457 (861)
Q Consensus 390 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~ 457 (861)
.+......+...|++++|...++.+++.+.... ..++..+...|...|++++|...|++... . ...+|
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 334444455556666666666666655431110 13444455555555555555555544311 0 11234
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHc
Q 002975 458 NTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGF-ESNHCIYNALISMYSR 536 (861)
Q Consensus 458 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~y~~ 536 (861)
..+...|...|++++|+..+++...... +.+- .....++..+...|..
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~~ 139 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISR-------------------------------ELNDKVGEARALYNLGNVYHA 139 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH-------------------------------hcccccchHHHHHHHHHHHHH
Confidence 4444444445555555554444432100 0010 0012345555566666
Q ss_pred cCC--------------------HHHHHHHHHhccC-----CC----chHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-
Q 002975 537 CAN--------------------VEAAFQVFKEMED-----RN----VISWTSMITGFAKHGFAARALEIFYKMLADGI- 586 (861)
Q Consensus 537 ~g~--------------------~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~- 586 (861)
.|+ +++|.+.|++..+ .+ ..+|..+...|...|++++|+..|++..+...
T Consensus 140 ~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 140 KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 666 6666666554431 11 23566777777778888888888777765310
Q ss_pred CCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC----hhHHHHHHHHhhhcCCHHHHHHHHHhCC----C
Q 002975 587 KPN----GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR----MEHYACMVDLLGRSGSLTEALEFIRSMP----L 654 (861)
Q Consensus 587 ~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~r~g~~~eA~~~~~~~~----~ 654 (861)
.++ ..++..+...+...|++++|..+++...+...-.++ ...+..+...|.+.|++++|.+.++++. .
T Consensus 220 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 111 236777777788888888888888776532211111 3466777788888888888888877652 1
Q ss_pred CCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC------CCchHHHHHHHHHHcCChhH
Q 002975 655 SAD----VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ------DPAAHILLSNLYASAGHWEY 710 (861)
Q Consensus 655 ~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~L~~~y~~~g~~~~ 710 (861)
.++ ..+|..+...+...|+++.|...+++++++.+. ...++..|+.+|...|+...
T Consensus 300 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 122 457778888999999999999999999987433 35677788999998887643
No 62
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.37 E-value=1.6e-11 Score=125.72 Aligned_cols=216 Identities=11% Similarity=-0.009 Sum_probs=179.5
Q ss_pred hcccchHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHH
Q 002975 500 SSIGAIGKGEQIHARIIKSGF---ESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAAR 573 (861)
Q Consensus 500 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 573 (861)
...+++++|...+..+++... +.+..++..+...|...|++++|...|+++.+ .+..+|..+...|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 456899999999999988632 22567888999999999999999999998863 457899999999999999999
Q ss_pred HHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC
Q 002975 574 ALEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM 652 (861)
Q Consensus 574 A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~ 652 (861)
|+..|+++++. .| +...+..+...+...|++++|..+|+.+.+ +.|+..........+.+.|++++|...+++.
T Consensus 96 A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 96 AYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999994 45 467889999999999999999999999984 3455555555566667889999999999765
Q ss_pred C--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC----CCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 653 P--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ----DPAAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 653 ~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
. .+++...|. ++..+...++.+.|...++++++..|. ++..+..++.+|...|++++|.+.++...+.
T Consensus 171 ~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 171 FEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 2 334444443 677778888999999999999998774 3688999999999999999999999988764
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.31 E-value=2.3e-11 Score=132.90 Aligned_cols=265 Identities=12% Similarity=0.020 Sum_probs=154.3
Q ss_pred HHHHHhcccCChHHHHHHHHHHHHcCCCCCc----chhhHHHHHHHHcCCHHHHHHHHHhcCCC---------CeehHHH
Q 002975 393 SVLKACGNLLDSNVAEQVYTHAVKRGRALDD----CVGNSLISMYARSGRMEDARKAFESLFEK---------NLVSYNT 459 (861)
Q Consensus 393 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~ 459 (861)
.+...+...|++++|...++.+++.... +. .++..+...|...|++++|...|++..+. ....|..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3444555666666666666666655311 11 24455555555556666655555544210 1123444
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHccC
Q 002975 460 MVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSG-FESNHCIYNALISMYSRCA 538 (861)
Q Consensus 460 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~y~~~g 538 (861)
+...|...|++++|+..|++..... .+.+ .+....++..+...|...|
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~~g 180 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLGNVYHAKG 180 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHHHHHHHcC
Confidence 4445555555555555554443210 0001 0112334555556666666
Q ss_pred C-----------------HHHHHHHHHhccC-----C----CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC--
Q 002975 539 N-----------------VEAAFQVFKEMED-----R----NVISWTSMITGFAKHGFAARALEIFYKMLADGIK-PN-- 589 (861)
Q Consensus 539 ~-----------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-- 589 (861)
+ +++|.+.|++..+ . ...+|..+...|...|++++|+..|++..+.... ++
T Consensus 181 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 6 6666666554431 1 1236666777777777777777777777653100 11
Q ss_pred --hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC----ChhHHHHHHHHhhhcCCHHHHHHHHHhCC----CCCC--
Q 002975 590 --GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ----RMEHYACMVDLLGRSGSLTEALEFIRSMP----LSAD-- 657 (861)
Q Consensus 590 --~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~l~~~~~r~g~~~eA~~~~~~~~----~~p~-- 657 (861)
..++..+...+...|++++|..+|+...+...-.. ....+..+..+|.+.|++++|.+.+++.. ..++
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 340 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI 340 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH
Confidence 22566777777788888888888777653321111 13456677778888888888888877652 1111
Q ss_pred --HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Q 002975 658 --VLVWRTFLGACRVHGDTELGKHAAEMILEQDP 689 (861)
Q Consensus 658 --~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 689 (861)
..++..+...+...|+.+.|...+++++++.+
T Consensus 341 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 341 GEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 34777788889999999999999999998876
No 64
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.31 E-value=2.4e-11 Score=140.26 Aligned_cols=160 Identities=15% Similarity=0.170 Sum_probs=120.2
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHH
Q 002975 555 VISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACM 632 (861)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l 632 (861)
..+|+.|...|.+.|++++|++.|++.++ +.|+ ..++..+..++.+.|++++|+..|++..+ +.| +...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 34566666666677777777777777666 4554 44666666777777777777777766662 234 34566667
Q ss_pred HHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhH
Q 002975 633 VDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEY 710 (861)
Q Consensus 633 ~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~ 710 (861)
..+|.+.|++++|++.+++.. ..| +...|..|..++...|++++|+..++++++++|+++.+|..|+.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 777777777777777776652 344 577899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 002975 711 VANIRKRMK 719 (861)
Q Consensus 711 a~~~~~~m~ 719 (861)
|.+.+++..
T Consensus 164 A~~~~~kal 172 (723)
T 4gyw_A 164 YDERMKKLV 172 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988877654
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.28 E-value=9.2e-10 Score=114.78 Aligned_cols=220 Identities=12% Similarity=0.081 Sum_probs=163.4
Q ss_pred hHHHHHHHHHhhcCCCCCHHHHHHHHHHhh-------cccch-------HHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 002975 471 EKAFELLHEIEDTGVGTSAYTFASLLSGAS-------SIGAI-------GKGEQIHARIIKSGFESNHCIYNALISMYSR 536 (861)
Q Consensus 471 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 536 (861)
++|+.+|++..... +-+...|..+...+. +.|++ ++|..++++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777542 334555555555554 34665 7888888888873224466788889999999
Q ss_pred cCCHHHHHHHHHhccC--C-Cch-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHH-hcCCHHHHHH
Q 002975 537 CANVEAAFQVFKEMED--R-NVI-SWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACS-HAGLISEGWK 611 (861)
Q Consensus 537 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~ 611 (861)
.|++++|.++|++..+ | +.. .|..++..+.+.|++++|..+|++.++.. +++...|........ ..|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999998774 3 333 78888888889999999999999998843 223444544433322 3689999999
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC----CCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 002975 612 HFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP----LSA--DVLVWRTFLGACRVHGDTELGKHAAEMIL 685 (861)
Q Consensus 612 ~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~----~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 685 (861)
+|+...+... -+...|..+++.+.+.|++++|..+|+++. .+| ...+|..++.....+|+.+.|..++++++
T Consensus 191 ~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9998885432 256778888889999999999999998873 244 46789999998999999999999999999
Q ss_pred ccCCCCCch
Q 002975 686 EQDPQDPAA 694 (861)
Q Consensus 686 ~~~p~~~~~ 694 (861)
+..|+++..
T Consensus 269 ~~~p~~~~~ 277 (308)
T 2ond_A 269 TAFREEYEG 277 (308)
T ss_dssp HHTTTTTSS
T ss_pred HHccccccc
Confidence 999986543
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.27 E-value=9.2e-11 Score=123.75 Aligned_cols=199 Identities=12% Similarity=0.044 Sum_probs=119.2
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHHhC--CC---CchhHHHHHHHHHHccCC--------------------HHHHHHH
Q 002975 492 FASLLSGASSIGAIGKGEQIHARIIKSG--FE---SNHCIYNALISMYSRCAN--------------------VEAAFQV 546 (861)
Q Consensus 492 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~li~~y~~~g~--------------------~~~A~~~ 546 (861)
+..+...+...|++++|...+....+.. .. ....++..+...|...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 3344444444455555554444433210 00 012345555566666666 6666666
Q ss_pred HHhccC-----CC----chHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----hHHHHHHHHHHHhcCCHHHHHHH
Q 002975 547 FKEMED-----RN----VISWTSMITGFAKHGFAARALEIFYKMLADGI-KPN----GITYIAVLSACSHAGLISEGWKH 612 (861)
Q Consensus 547 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~ 612 (861)
+++... .+ ...+..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|..+
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 654431 11 23566667777777777777777777665310 011 22666777777788888888887
Q ss_pred HHHHHhhcCCCCC----hhHHHHHHHHhhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHHhCCHHHHHHH
Q 002975 613 FRSMYDEHGIVQR----MEHYACMVDLLGRSGSLTEALEFIRSMP----LSAD----VLVWRTFLGACRVHGDTELGKHA 680 (861)
Q Consensus 613 ~~~m~~~~~~~p~----~~~~~~l~~~~~r~g~~~eA~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~ 680 (861)
++...+...-.++ ...+..+...|.+.|++++|.+.++++. ...+ ..+|..+...+...|+.+.|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 7776532211111 3456677778888888888888877652 1111 44777888889999999999999
Q ss_pred HHHHhccCCC
Q 002975 681 AEMILEQDPQ 690 (861)
Q Consensus 681 ~~~~~~~~p~ 690 (861)
+++++++.++
T Consensus 326 ~~~a~~~~~~ 335 (338)
T 3ro2_A 326 AEKHLEISRE 335 (338)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.27 E-value=1.6e-10 Score=110.24 Aligned_cols=166 Identities=13% Similarity=0.098 Sum_probs=136.6
Q ss_pred chhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHH
Q 002975 523 NHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLS 598 (861)
Q Consensus 523 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 598 (861)
+..+|..|...|.+.|++++|++.|++..+ .+..+|..+...|.+.|++++|+..+++.... .|+ ...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 567788888999999999999999988763 45678888888999999999999999988884 444 556777778
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHH
Q 002975 599 ACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTEL 676 (861)
Q Consensus 599 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~ 676 (861)
.+...++++++...+....+.. +.+...+..+..+|.+.|++++|++.+++.. .+.+..+|..++.++...|+.++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 8888899999999988887432 2345677888889999999999999998863 34467899999999999999999
Q ss_pred HHHHHHHHhccCCCCC
Q 002975 677 GKHAAEMILEQDPQDP 692 (861)
Q Consensus 677 a~~~~~~~~~~~p~~~ 692 (861)
|+..++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999999763
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.26 E-value=1.4e-11 Score=128.66 Aligned_cols=240 Identities=11% Similarity=0.038 Sum_probs=124.5
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHhhc-------CCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHh------CC-
Q 002975 455 VSYNTMVDAYAKNLNSEKAFELLHEIEDT-------GVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKS------GF- 520 (861)
Q Consensus 455 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------~~- 520 (861)
.+|..+...|...|++++|+.+|+++... .......++..+...+...|++++|...+..+++. +-
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 46777888888888888888888887753 22223445566666666777777777776666543 11
Q ss_pred CCchhHHHHHHHHHHccCCHHHHHHHHHhccC-------C----CchHHHHHHHHHHhcCChHHHHHHHHHHHHc-----
Q 002975 521 ESNHCIYNALISMYSRCANVEAAFQVFKEMED-------R----NVISWTSMITGFAKHGFAARALEIFYKMLAD----- 584 (861)
Q Consensus 521 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 584 (861)
+....++..+...|...|++++|...|++..+ + ....|..+...|...|++++|+.+|+++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 22344556666666666666666666665442 1 1234555556666666666666666665553
Q ss_pred -CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc------CCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCC
Q 002975 585 -GIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEH------GIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSA 656 (861)
Q Consensus 585 -g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p 656 (861)
+..|+ ..++..+...+...|++++|..+|+.+.+.. ...+.......
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------------------- 242 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM------------------------- 242 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH-------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH-------------------------
Confidence 11222 2345555556666666666666666554210 00000000000
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 002975 657 DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMK 719 (861)
Q Consensus 657 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~ 719 (861)
....+..+...+...+....+...++++.+..|.++.++..|+.+|...|++++|.+.++...
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 243 HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 011111222223334444455555666666666666667777777777777777777666553
No 69
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.25 E-value=3.3e-08 Score=112.63 Aligned_cols=218 Identities=8% Similarity=-0.053 Sum_probs=166.7
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHH-HHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhc
Q 002975 472 KAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGE-QIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEM 550 (861)
Q Consensus 472 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 550 (861)
.+..+|++.... ++-+...|.....-+.+.|+.+.|. ++++..+... +.+...+-.++..+.+.|+++.|.++|+.+
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455667777654 3446677777777777888888886 9999998753 567777888899999999999999999987
Q ss_pred cC-------------CC------------chHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHhc-
Q 002975 551 ED-------------RN------------VISWTSMITGFAKHGFAARALEIFYKMLAD-GIKPNGITYIAVLSACSHA- 603 (861)
Q Consensus 551 ~~-------------~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~- 603 (861)
.+ |. ...|...+....+.|..+.|..+|.+.++. + .+....|...+..-.+.
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhC
Confidence 63 21 236888888888899999999999999985 2 12233443333222333
Q ss_pred CCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC----CHHHHHHHHHHHHHhCCHHHHH
Q 002975 604 GLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA----DVLVWRTFLGACRVHGDTELGK 678 (861)
Q Consensus 604 g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p----~~~~~~~ll~~~~~~g~~~~a~ 678 (861)
++.+.|..+|+...+.++ -+...+...++.+...|+.+.|..+|++.. ..| ...+|..++..-..+|+.+.+.
T Consensus 484 ~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp SCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 458999999999987653 344556788888999999999999999874 223 3468999999999999999999
Q ss_pred HHHHHHhccCCCCCch
Q 002975 679 HAAEMILEQDPQDPAA 694 (861)
Q Consensus 679 ~~~~~~~~~~p~~~~~ 694 (861)
.+.+++.+..|+++..
T Consensus 562 ~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 562 TLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHHHHHSTTCCHH
T ss_pred HHHHHHHHhCCCCcHH
Confidence 9999999999987544
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.25 E-value=2.2e-11 Score=127.23 Aligned_cols=247 Identities=15% Similarity=0.085 Sum_probs=170.5
Q ss_pred CcchhhHHHHHHHHcCCHHHHHHHHHhcCC--------C---CeehHHHHHHHHHhcCChhHHHHHHHHHhhc------C
Q 002975 422 DDCVGNSLISMYARSGRMEDARKAFESLFE--------K---NLVSYNTMVDAYAKNLNSEKAFELLHEIEDT------G 484 (861)
Q Consensus 422 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g 484 (861)
+..++..+...|...|++++|..+|+++.+ . ....+..+...|...|++++|+..+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 345778899999999999999999998743 2 2356888899999999999999999998764 2
Q ss_pred C-CCCHHHHHHHHHHhhcccchHHHHHHHHHHHHh------CC-CCchhHHHHHHHHHHccCCHHHHHHHHHhccC----
Q 002975 485 V-GTSAYTFASLLSGASSIGAIGKGEQIHARIIKS------GF-ESNHCIYNALISMYSRCANVEAAFQVFKEMED---- 552 (861)
Q Consensus 485 ~-~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---- 552 (861)
- .....++..+...+...|++++|...+..+.+. +- +....++..+...|...|++++|.+.|+++.+
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2 233567888889999999999999999988764 22 23456788899999999999999999987753
Q ss_pred ---C-C---chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC
Q 002975 553 ---R-N---VISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR 625 (861)
Q Consensus 553 ---~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 625 (861)
+ + ..+|..+...|...|++++|+..|+++.+. .|+.. +..+- ........ .
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~-~~~~~---~~~~~~~~----------------~ 243 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR--AHERE-FGSVD---DENKPIWM----------------H 243 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHHH-HC---------CCHHH----------------H
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHhc-CCCCC---cchHHHHH----------------H
Confidence 1 2 347888999999999999999999999874 11100 00000 00000000 0
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Q 002975 626 MEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ 690 (861)
Q Consensus 626 ~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 690 (861)
...+..+...+...+.+.+|...++... ..| +..+|..+..++...|+++.|...+++++++.|+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 244 AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1112223334445566666666666653 223 4567888999999999999999999999998775
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.24 E-value=1.8e-10 Score=124.42 Aligned_cols=194 Identities=9% Similarity=0.003 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHhccC-----CC-----chHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCC-
Q 002975 525 CIYNALISMYSRCANVEAAFQVFKEMED-----RN-----VISWTSMITGFAKHGFAARALEIFYKMLADG----IKPN- 589 (861)
Q Consensus 525 ~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~- 589 (861)
.++..+...|...|++++|...+++..+ ++ ..+++.+...|...|++++|+..|++.++.. -.+.
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 223 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLM 223 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHH
Confidence 3444444555555555555544444331 11 1244445555555555555555555544320 0000
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---cCC-CCChhHHHHHHHHhhhcCCHHHHHHHHHhCC------CCCC-H
Q 002975 590 GITYIAVLSACSHAGLISEGWKHFRSMYDE---HGI-VQRMEHYACMVDLLGRSGSLTEALEFIRSMP------LSAD-V 658 (861)
Q Consensus 590 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~-~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~------~~p~-~ 658 (861)
..++..+...+...|++++|..+|++..+. .+. +.....+..+...|.+.|++++|.+.+++.. ..|. .
T Consensus 224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 303 (383)
T 3ulq_A 224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYL 303 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 124445555555555555555555554421 011 1123344455555555555555555555431 0111 1
Q ss_pred HHHHHHHHHHHHhCC---HHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 002975 659 LVWRTFLGACRVHGD---TELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMK 719 (861)
Q Consensus 659 ~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~ 719 (861)
..+..+...+...|+ .+.|...+++. ...|.....+..|+.+|...|++++|.+.+++..
T Consensus 304 ~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 304 SEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 123334444555555 44444444444 2223334456667777777777777777666554
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.24 E-value=1.9e-10 Score=127.74 Aligned_cols=177 Identities=10% Similarity=0.022 Sum_probs=156.4
Q ss_pred CHHHHHHHHHhccC---CCchHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHH
Q 002975 539 NVEAAFQVFKEMED---RNVISWTSMITGFAKHGFA-ARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHF 613 (861)
Q Consensus 539 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 613 (861)
.++++.+.+++... .+...|..+...|...|++ ++|+..|++.++ ..|+ ...|..+..++...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35666677766542 3667889999999999999 999999999999 4565 678999999999999999999999
Q ss_pred HHHHhhcCCCCChhHHHHHHHHhhhc---------CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHh--------CCH
Q 002975 614 RSMYDEHGIVQRMEHYACMVDLLGRS---------GSLTEALEFIRSMP--LSADVLVWRTFLGACRVH--------GDT 674 (861)
Q Consensus 614 ~~m~~~~~~~p~~~~~~~l~~~~~r~---------g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~--------g~~ 674 (861)
+... .+.|+...+..+..+|... |++++|++.++++. .+.+...|..+..++... |++
T Consensus 161 ~~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 9988 4568888899999999999 99999999999873 344688999999999998 999
Q ss_pred HHHHHHHHHHhccCC---CCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 675 ELGKHAAEMILEQDP---QDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 675 ~~a~~~~~~~~~~~p---~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
++|+..++++++++| +++..|..++.+|...|++++|.+.+++..+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999 9999999999999999999999999998866
No 73
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.23 E-value=3.8e-10 Score=111.88 Aligned_cols=205 Identities=8% Similarity=0.029 Sum_probs=151.7
Q ss_pred CCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--C-CchHHHHHHH
Q 002975 487 TSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED--R-NVISWTSMIT 563 (861)
Q Consensus 487 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~ 563 (861)
.|+..+......+...|++++|...+..+++...+++...+..+...|.+.|++++|.+.|++..+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456777788888888899999999999888876436777777788888899999999998887763 2 4567888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-h-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC---hhHHHHH
Q 002975 564 GFAKHGFAARALEIFYKMLADGIKPN-G-------ITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR---MEHYACM 632 (861)
Q Consensus 564 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l 632 (861)
.|...|++++|+..|++.++ ..|+ . ..|..+...+...|++++|...|+... .+.|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHH
Confidence 88899999999999998888 4454 3 346777778888888999999888877 44565 4566677
Q ss_pred HHHhhhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 002975 633 VDLLGRSGSL--TEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYA 703 (861)
Q Consensus 633 ~~~~~r~g~~--~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~ 703 (861)
..+|...|+. ++|..+ ...+...+..+. ....++++.|...++++++++|+++.+...|+.+..
T Consensus 160 ~~~~~~~~~~~~~~a~~~-----~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPL-----ASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHHGGG-----TTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc-----ccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 7777665543 333222 122333333332 344566899999999999999999988888877654
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.22 E-value=3e-10 Score=122.76 Aligned_cols=230 Identities=10% Similarity=-0.017 Sum_probs=175.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCC-CCC----HHHHHHHHHHhhcccchHHHHHHHHHHHHh--CC----CCchhHHH
Q 002975 460 MVDAYAKNLNSEKAFELLHEIEDTGV-GTS----AYTFASLLSGASSIGAIGKGEQIHARIIKS--GF----ESNHCIYN 528 (861)
Q Consensus 460 li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--~~----~~~~~~~~ 528 (861)
....+...|++++|+..|++....-. .+| ..++..+...+...|+.+.|...+....+. .. .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44556778888888888888765311 122 356777778888888888888888877653 11 11245778
Q ss_pred HHHHHHHccCCHHHHHHHHHhccC-----CC----chHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-hHHHH
Q 002975 529 ALISMYSRCANVEAAFQVFKEMED-----RN----VISWTSMITGFAKHGFAARALEIFYKMLAD----GIKPN-GITYI 594 (861)
Q Consensus 529 ~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~ 594 (861)
.+...|...|++++|...|++..+ ++ ..+|+.+...|...|++++|+..|++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 889999999999999999987762 22 247888999999999999999999998873 33244 55788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcC---CCCChhHHHHHHHHhhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 002975 595 AVLSACSHAGLISEGWKHFRSMYDEHG---IVQRMEHYACMVDLLGRSGS---LTEALEFIRSMPLSAD-VLVWRTFLGA 667 (861)
Q Consensus 595 ~ll~a~~~~g~~~~a~~~~~~m~~~~~---~~p~~~~~~~l~~~~~r~g~---~~eA~~~~~~~~~~p~-~~~~~~ll~~ 667 (861)
.+...+...|++++|..++++..+... -......+..+..++...|+ +++|+.++++....|+ ..++..|...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 899999999999999999998874321 11222345678889999999 9999999999865544 3467778889
Q ss_pred HHHhCCHHHHHHHHHHHhccCC
Q 002975 668 CRVHGDTELGKHAAEMILEQDP 689 (861)
Q Consensus 668 ~~~~g~~~~a~~~~~~~~~~~p 689 (861)
+...|+.+.|...+++++++..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999987644
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.21 E-value=2.9e-10 Score=112.74 Aligned_cols=189 Identities=9% Similarity=-0.042 Sum_probs=105.2
Q ss_pred chhHHHHHHHHHHccCCHHHHHHHHHhccC----CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHH
Q 002975 523 NHCIYNALISMYSRCANVEAAFQVFKEMED----RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVL 597 (861)
Q Consensus 523 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll 597 (861)
|+..+..+...|.+.|++++|...|++..+ ++...|..+..+|...|++++|+..|++..+ ..|+ ...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 445566666666677777777777665542 4555555566666667777777777776666 4454 34566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCCh-----hHHHHHHHHhhhcCCHHHHHHHHHhCC-CCCC---HHHHHHHHHHH
Q 002975 598 SACSHAGLISEGWKHFRSMYDEHGIVQRM-----EHYACMVDLLGRSGSLTEALEFIRSMP-LSAD---VLVWRTFLGAC 668 (861)
Q Consensus 598 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~---~~~~~~ll~~~ 668 (861)
.++...|++++|...|+...+...-.+.. ..|..+...+.+.|++++|++.++++. ..|+ ...|..+..++
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 66666677777777666666332111111 334555555555666666666655542 3343 23444444444
Q ss_pred HHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 669 RVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 669 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
.. .+...++++..+.+.+...|. .......+.+++|...+++..+
T Consensus 164 ~~-----~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 164 YN-----NGADVLRKATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HH-----HHHHHHHHHGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhh
Confidence 32 233344455555544433332 2233344455888888887765
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.20 E-value=5.7e-10 Score=106.12 Aligned_cols=159 Identities=15% Similarity=0.093 Sum_probs=98.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHH
Q 002975 526 IYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACS 601 (861)
Q Consensus 526 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~ 601 (861)
.+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|+..++++.+. .| +...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 444455555555666666655555542 23344555555555555555555555555552 22 2334444444444
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 002975 602 HAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAA 681 (861)
Q Consensus 602 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 681 (861)
..|++++|..+++.+.+. .+.+..+|..+...+...|+.+.|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~----------------------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 133 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA----------------------------------NPINFNVRFRLGVALDNLGRFDEAIDSF 133 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH----------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc----------------------------------CcHhHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 445555554444444311 2335667777777888888888888888
Q ss_pred HHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 682 EMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 682 ~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+++++..|+++..+..++.+|...|++++|.+.++...+
T Consensus 134 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888877654
No 77
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.20 E-value=1e-09 Score=114.40 Aligned_cols=212 Identities=11% Similarity=0.071 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHH-------ccCCH-------HHHHHHHHhccC---C-CchHHHHHHHHHHh
Q 002975 506 GKGEQIHARIIKSGFESNHCIYNALISMYS-------RCANV-------EAAFQVFKEMED---R-NVISWTSMITGFAK 567 (861)
Q Consensus 506 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 567 (861)
++|..+++++++.. +.++..|..++..+. +.|++ ++|..+|++... | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67778888888764 667888888888776 35885 999999998764 3 45689999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCh-H-HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhh-hcCCHHH
Q 002975 568 HGFAARALEIFYKMLADGIKPNG-I-TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLG-RSGSLTE 644 (861)
Q Consensus 568 ~g~~~~A~~~~~~m~~~g~~p~~-~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~-r~g~~~e 644 (861)
.|++++|..+|++.++ +.|+. . .|..++..+.+.|++++|..+|++..+.. +++...|.....+.. ..|+.++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998 66763 3 78999999999999999999999998322 223445544443322 3699999
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcc---CCC-CCchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 645 ALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQ---DPQ-DPAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 645 A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
|.++|+++. .+.+...|..++..+...|+.+.|..+++++++. .|+ ....+..++..+...|++++|..+.+.+
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999873 3346889999999999999999999999999995 554 5678889999999999999999999988
Q ss_pred HhCC
Q 002975 719 KERN 722 (861)
Q Consensus 719 ~~~~ 722 (861)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 7643
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.18 E-value=1e-08 Score=110.11 Aligned_cols=259 Identities=11% Similarity=0.002 Sum_probs=170.9
Q ss_pred HHHHhcCChhHHHHHHHHHhhcCCCCCHH----HHHHHHHHhhcccchHHHHHHHHHHHHhC--C-CC--chhHHHHHHH
Q 002975 462 DAYAKNLNSEKAFELLHEIEDTGVGTSAY----TFASLLSGASSIGAIGKGEQIHARIIKSG--F-ES--NHCIYNALIS 532 (861)
Q Consensus 462 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~-~~--~~~~~~~li~ 532 (861)
..+...|++++|...+++........+.. ++..+...+...|++++|.+.+....+.. . .+ ...++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34455666777777666665443222221 34444555666677777777766655421 0 11 1233566777
Q ss_pred HHHccCCHHHHHHHHHhccC-------C----CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--ChHHHHHHH
Q 002975 533 MYSRCANVEAAFQVFKEMED-------R----NVISWTSMITGFAKHGFAARALEIFYKMLADGIK--P--NGITYIAVL 597 (861)
Q Consensus 533 ~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll 597 (861)
.|...|++++|...+++... + ....+..+...|...|++++|...+++..+.... + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 88888888888888876652 1 1235566777888889999999999888764221 1 124677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCC-hhHHH----HHHHHhhhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHH
Q 002975 598 SACSHAGLISEGWKHFRSMYDEHGIVQR-MEHYA----CMVDLLGRSGSLTEALEFIRSMP-LSAD-----VLVWRTFLG 666 (861)
Q Consensus 598 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~----~l~~~~~r~g~~~eA~~~~~~~~-~~p~-----~~~~~~ll~ 666 (861)
..+...|++++|..+++.......-... ..... ..+..+...|++++|...+++.. ..|. ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 8888899999999999887643222111 11111 23345778999999999998874 1221 335667778
Q ss_pred HHHHhCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 667 ACRVHGDTELGKHAAEMILEQDPQD------PAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 667 ~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
.+...|+.+.|...++++++..+.. ...+..++.+|...|++++|.+.++...+
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8889999999999999988764432 13677889999999999999998886654
No 79
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.16 E-value=4.9e-08 Score=111.23 Aligned_cols=100 Identities=6% Similarity=-0.066 Sum_probs=70.1
Q ss_pred cchhHHHHHHHHHcCCCCCcchHHHHHHHHhcCCChHHHHHHHHhc--CCCCCceeHHHHHHHHHhcCC---hhHHHHHH
Q 002975 94 FHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGDLNEANKIFKSM--GNKRDIVSWSSMISSYVNRGK---QVDAIHMF 168 (861)
Q Consensus 94 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~g~---~~~A~~~~ 168 (861)
.......++..+...+ -|...|..++..+.+.+.++.++.+|+.+ ..+.....|...+..-.+.|. .+.+..+|
T Consensus 48 ~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 3344455666666665 48889999999998889999999999887 232455668888888888888 88999999
Q ss_pred HHHHHcC-CCCCcccHHHHHHHhcCCc
Q 002975 169 VEMLELG-FCPNEYCFSAVIRACSNTE 194 (861)
Q Consensus 169 ~~m~~~g-~~p~~~t~~~ll~~~~~~~ 194 (861)
++..... ..|+...|..-+.-..+.+
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~ 153 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKN 153 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhc
Confidence 8887653 2366666666555444443
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.13 E-value=2.2e-09 Score=101.94 Aligned_cols=170 Identities=12% Similarity=0.035 Sum_probs=136.3
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHH
Q 002975 489 AYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGF 565 (861)
Q Consensus 489 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 565 (861)
...+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3466777888899999999999999887654 45788899999999999999999999998763 4667889999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHH
Q 002975 566 AKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEA 645 (861)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA 645 (861)
...|++++|++.|+++.+.. +.+...+..+...+...|++++|..+++.+.+..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------------------- 140 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR------------------------- 140 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-------------------------
Confidence 99999999999999999853 3346677778888888888888888887776321
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCch
Q 002975 646 LEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAA 694 (861)
Q Consensus 646 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 694 (861)
+.+..+|..+...+...|+.+.|...++++++++|+++..
T Consensus 141 ---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 141 ---------PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180 (186)
T ss_dssp ---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred ---------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence 2245566777777778888888888888888887776544
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.12 E-value=1.8e-09 Score=116.25 Aligned_cols=219 Identities=11% Similarity=-0.011 Sum_probs=108.3
Q ss_pred hcccchHHHHHHHHHHHHhC--CC---CchhHHHHHHHHHHccCCHHHHHHHHHhccC-----CC-----chHHHHHHHH
Q 002975 500 SSIGAIGKGEQIHARIIKSG--FE---SNHCIYNALISMYSRCANVEAAFQVFKEMED-----RN-----VISWTSMITG 564 (861)
Q Consensus 500 ~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~ 564 (861)
...|++++|...+..+.+.. .. ....++..+...|...|+++.|...+++..+ ++ ..+++.+...
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 44455555555555544320 00 1133445555555556665555555554431 11 2345555556
Q ss_pred HHhcCChHHHHHHHHHHHHc----CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc---CCCCChhHHHHHHHHh
Q 002975 565 FAKHGFAARALEIFYKMLAD----GIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEH---GIVQRMEHYACMVDLL 636 (861)
Q Consensus 565 ~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~~~~l~~~~ 636 (861)
|...|++++|++.|++.++. +-.+. ..++..+..++...|++++|..+|++..+.. +.+.....+..+...+
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 271 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence 66666666666666555542 11111 2345555556666666666666666554311 1111234455555666
Q ss_pred hhcCCHHHHHHHHHhCC----C--CCC-HHHHHHHHHHHHHhCC---HHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC
Q 002975 637 GRSGSLTEALEFIRSMP----L--SAD-VLVWRTFLGACRVHGD---TELGKHAAEMILEQDPQDPAAHILLSNLYASAG 706 (861)
Q Consensus 637 ~r~g~~~eA~~~~~~~~----~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g 706 (861)
.+.|++++|.+.+++.. . .|. ...+..+...+...++ .+.|...+++. ...|+....+..|+.+|...|
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g 350 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSC 350 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCC
Confidence 66666666666665541 1 122 2233333344444555 44444444441 122333345566777777777
Q ss_pred ChhHHHHHHHHHH
Q 002975 707 HWEYVANIRKRMK 719 (861)
Q Consensus 707 ~~~~a~~~~~~m~ 719 (861)
++++|.+.+++..
T Consensus 351 ~~~~A~~~~~~al 363 (378)
T 3q15_A 351 HFEQAAAFYRKVL 363 (378)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 7777777766553
No 82
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.07 E-value=2.9e-09 Score=109.90 Aligned_cols=186 Identities=10% Similarity=-0.024 Sum_probs=119.8
Q ss_pred HHHccCCHHHHHHHHHhccC-----CC----chHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--hHHHHHHHH
Q 002975 533 MYSRCANVEAAFQVFKEMED-----RN----VISWTSMITGFAKHGFAARALEIFYKMLADGI---KPN--GITYIAVLS 598 (861)
Q Consensus 533 ~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~ 598 (861)
.|...|++++|...|++..+ .+ ..+|+.+...|...|++++|+..|++.++... .+. ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556666666666654432 11 34666777777777777777777777665210 111 246777788
Q ss_pred HHHhc-CCHHHHHHHHHHHHhhcCCCCC----hhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC---CH-----HHHHHH
Q 002975 599 ACSHA-GLISEGWKHFRSMYDEHGIVQR----MEHYACMVDLLGRSGSLTEALEFIRSMP-LSA---DV-----LVWRTF 664 (861)
Q Consensus 599 a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p---~~-----~~~~~l 664 (861)
.|... |++++|+..|++..+...-..+ ...+..+...|.+.|++++|++.+++.. ..| .. ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 8888888888887643211111 3457778888889999999998888752 222 21 156777
Q ss_pred HHHHHHhCCHHHHHHHHHHHhccCCCCCch-----HHHHHHHHH--HcCChhHHHHHHHHH
Q 002975 665 LGACRVHGDTELGKHAAEMILEQDPQDPAA-----HILLSNLYA--SAGHWEYVANIRKRM 718 (861)
Q Consensus 665 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~L~~~y~--~~g~~~~a~~~~~~m 718 (861)
+.++...|+++.|+..++++++++|+.... +..|...|. ..+++++|.+.++.+
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 778889999999999999999999986654 334556664 457788888777543
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.06 E-value=3.3e-08 Score=106.36 Aligned_cols=228 Identities=11% Similarity=0.016 Sum_probs=171.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCC-CCC----HHHHHHHHHHhhcccchHHHHHHHHHHHHh--CCC----CchhHHH
Q 002975 460 MVDAYAKNLNSEKAFELLHEIEDTGV-GTS----AYTFASLLSGASSIGAIGKGEQIHARIIKS--GFE----SNHCIYN 528 (861)
Q Consensus 460 li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~~~ 528 (861)
....+...|++++|+..|++...... .+| ..++..+...+...|+.+.|...+....+. ... ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456678888888888888765321 122 346677777888888888888888877653 111 1255678
Q ss_pred HHHHHHHccCCHHHHHHHHHhccC-----CC----chHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCChHHHHH
Q 002975 529 ALISMYSRCANVEAAFQVFKEMED-----RN----VISWTSMITGFAKHGFAARALEIFYKMLAD----GIKPNGITYIA 595 (861)
Q Consensus 529 ~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ 595 (861)
.+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|+..|++..+. +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 889999999999999999987653 22 347788899999999999999999998872 21222567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCC---ChhHHHHHHHHhhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 002975 596 VLSACSHAGLISEGWKHFRSMYDEHGIVQ---RMEHYACMVDLLGRSGS---LTEALEFIRSMPLSAD-VLVWRTFLGAC 668 (861)
Q Consensus 596 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p---~~~~~~~l~~~~~r~g~---~~eA~~~~~~~~~~p~-~~~~~~ll~~~ 668 (861)
+...+.+.|++++|..++++..+...-.. ....+..+..++...|+ +++|+.++++....|+ ...+..+...+
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 99999999999999999999885433222 23456677778888888 9999999999754444 34666788889
Q ss_pred HHhCCHHHHHHHHHHHhcc
Q 002975 669 RVHGDTELGKHAAEMILEQ 687 (861)
Q Consensus 669 ~~~g~~~~a~~~~~~~~~~ 687 (861)
...|+.+.|...++++++.
T Consensus 347 ~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.03 E-value=1.5e-09 Score=125.30 Aligned_cols=165 Identities=12% Similarity=0.134 Sum_probs=135.3
Q ss_pred CCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHH
Q 002975 521 ESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAV 596 (861)
Q Consensus 521 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 596 (861)
+.+...++.|..+|.+.|++++|++.|++..+ .+..+|+.+...|.+.|++++|++.|++.++ +.|+ ...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 34567788888889899999999998887763 3567888888999999999999999999888 5676 5688888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCC
Q 002975 597 LSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGD 673 (861)
Q Consensus 597 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~ 673 (861)
..++...|++++|++.|++..+ +.| +...|..+..+|.+.|++++|++.++++. ..| +...|..|+.++...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 8899999999999999988873 345 45778888889999999999999988863 444 57788899999999999
Q ss_pred HHHHHHHHHHHhccCCC
Q 002975 674 TELGKHAAEMILEQDPQ 690 (861)
Q Consensus 674 ~~~a~~~~~~~~~~~p~ 690 (861)
++.|+..+++++++.|+
T Consensus 161 ~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVAD 177 (723)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChh
Confidence 99999999998886553
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.02 E-value=1.7e-09 Score=110.81 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=25.5
Q ss_pred HhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 684 ILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 684 ~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+....|..+..+..|+.+|...|++++|.+.+++..+
T Consensus 244 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 244 CKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334455566777788888888888888887776543
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.00 E-value=1.2e-08 Score=103.51 Aligned_cols=204 Identities=9% Similarity=-0.023 Sum_probs=143.2
Q ss_pred CchhHHHHHHHHHHccCCHHHHHHHHHhccC--C-C---chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hH
Q 002975 522 SNHCIYNALISMYSRCANVEAAFQVFKEMED--R-N---VISWTSMITGFAKHGFAARALEIFYKMLADGIKPN----GI 591 (861)
Q Consensus 522 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~ 591 (861)
.+...+-.+...+.+.|++++|...|+.+.+ | + ...|..+..+|.+.|++++|+..|++.++. .|+ ..
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHH
Confidence 4556667777788888888888888888764 3 2 456777788888888888888888888884 332 34
Q ss_pred HHHHHHHHHHh--------cCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 002975 592 TYIAVLSACSH--------AGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRT 663 (861)
Q Consensus 592 t~~~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ 663 (861)
.+..+..++.. .|++++|...|+.+.+.+.-.+. ....+..+....+.+ ...+..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~--~~~a~~~~~~~~~~~---------------~~~~~~ 153 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL--VDDATQKIRELRAKL---------------ARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT--HHHHHHHHHHHHHHH---------------HHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh--HHHHHHHHHHHHHHH---------------HHHHHH
Confidence 56667777777 88888888888888754422222 111111111111111 122566
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHHc----------CChhHHHHHHHHHHhCCCccCCcee
Q 002975 664 FLGACRVHGDTELGKHAAEMILEQDPQDP---AAHILLSNLYASA----------GHWEYVANIRKRMKERNLIKEAGCS 730 (861)
Q Consensus 664 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~L~~~y~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s 730 (861)
+...+...|+++.|+..++++++..|+++ .++..++.+|... |++++|.+.++.+.+...
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p------- 226 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP------- 226 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-------
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-------
Confidence 78889999999999999999999999854 5788999999977 999999999998876321
Q ss_pred EEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 002975 731 WIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKE 767 (861)
Q Consensus 731 ~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~ 767 (861)
.+|...+....+.++...+.+
T Consensus 227 ----------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 ----------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ----------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CChHHHHHHHHHHHHHHHHHH
Confidence 345556666777777666654
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.99 E-value=8e-09 Score=106.60 Aligned_cols=213 Identities=9% Similarity=-0.023 Sum_probs=121.2
Q ss_pred CHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 002975 438 RMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIK 517 (861)
Q Consensus 438 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 517 (861)
++++|...|++. ...|...|++++|++.|.+...... +
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~ 69 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQK-------------------------------K 69 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHH-------------------------------H
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHH-------------------------------H
Confidence 477777766654 5667777777777777776543210 0
Q ss_pred hCCCC-chhHHHHHHHHHHccCCHHHHHHHHHhccC-----CC----chHHHHHHHHHHhc-CChHHHHHHHHHHHHcCC
Q 002975 518 SGFES-NHCIYNALISMYSRCANVEAAFQVFKEMED-----RN----VISWTSMITGFAKH-GFAARALEIFYKMLADGI 586 (861)
Q Consensus 518 ~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~ 586 (861)
.|-++ ...+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...|... |++++|+..|++.++.
T Consensus 70 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~-- 147 (292)
T 1qqe_A 70 AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW-- 147 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--
T ss_pred hCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--
Confidence 01011 123444555555555555555555554431 11 23566666777775 7777777777777652
Q ss_pred CCC-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCh-----hHHHHHHHHhhhcCCHHHHHHHHHhCC-
Q 002975 587 KPN-------GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRM-----EHYACMVDLLGRSGSLTEALEFIRSMP- 653 (861)
Q Consensus 587 ~p~-------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~l~~~~~r~g~~~eA~~~~~~~~- 653 (861)
.|+ ..++..+...+...|++++|+.+|+...+...-.+.. ..|..+..++...|++++|+..+++..
T Consensus 148 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 148 YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 221 2356667777777777777777777776322111111 145566667777777777777777752
Q ss_pred CCCCH------HHHHHHHHHHH--HhCCHHHHHHHHHHHhccCCCCCch
Q 002975 654 LSADV------LVWRTFLGACR--VHGDTELGKHAAEMILEQDPQDPAA 694 (861)
Q Consensus 654 ~~p~~------~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~ 694 (861)
..|+. ..+..++.++. ..++++.|+..++++.+++|.+...
T Consensus 228 l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 276 (292)
T 1qqe_A 228 EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI 276 (292)
T ss_dssp C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHH
Confidence 33331 12334455553 3456778888887787777755333
No 88
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.94 E-value=3.6e-07 Score=97.93 Aligned_cols=155 Identities=9% Similarity=-0.028 Sum_probs=65.9
Q ss_pred HHHhcCCChHHHHHHHHHHhhCCCCCChh----hHHHHHHHhcccCChHHHHHHHHHHHHcCCCC-C----cchhhHHHH
Q 002975 361 GYVQSGGRDKEAVKLFSDMIQGQVAPNHF----TFASVLKACGNLLDSNVAEQVYTHAVKRGRAL-D----DCVGNSLIS 431 (861)
Q Consensus 361 ~~~~~g~~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~-~----~~~~~~li~ 431 (861)
.+...|+ +++|...+++........+.. ++..+...+...|+++.|.+.+....+..... + ..++..+..
T Consensus 23 ~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 23 VAINDGN-PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHTTC-HHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCC-HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3445565 777777776665532111111 22333334445555555555555544321100 0 111233444
Q ss_pred HHHHcCCHHHHHHHHHhcCC-------C----CeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCC----CCHHHHHHHH
Q 002975 432 MYARSGRMEDARKAFESLFE-------K----NLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVG----TSAYTFASLL 496 (861)
Q Consensus 432 ~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----p~~~t~~~ll 496 (861)
.|...|++++|...+++... + ....+..+...+...|++++|...+++....... ....++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 45555555555555444311 0 0112333444445555555555555544332111 0122333344
Q ss_pred HHhhcccchHHHHHHHHHHH
Q 002975 497 SGASSIGAIGKGEQIHARII 516 (861)
Q Consensus 497 ~a~~~~~~~~~a~~~~~~~~ 516 (861)
..+...|++++|...++...
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 44444444444444444443
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.93 E-value=1e-09 Score=100.44 Aligned_cols=135 Identities=13% Similarity=-0.033 Sum_probs=78.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHH
Q 002975 568 HGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEA 645 (861)
Q Consensus 568 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA 645 (861)
.|++++|+..+++... ..|+ ...+..+...|...|++++|++.|++..+. .| +...|..+..+|.+.|++++|
T Consensus 10 ~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 10 KADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp HHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCchHHH
Confidence 3444444444444333 2222 223333444444444444444444444421 22 233444444455555555555
Q ss_pred HHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHH-HHHHHhccCCCCCchHHHHHHHHHHcCC
Q 002975 646 LEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKH-AAEMILEQDPQDPAAHILLSNLYASAGH 707 (861)
Q Consensus 646 ~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~L~~~y~~~g~ 707 (861)
+..|++.. ..| ++.+|..+...+...|+.+.|.. .++++++++|+++.+|...+.++...|+
T Consensus 85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 55554432 233 57788889999999998876555 4699999999999999999999988885
No 90
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.93 E-value=2.7e-08 Score=101.69 Aligned_cols=199 Identities=11% Similarity=0.042 Sum_probs=119.9
Q ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHh------CC-CCchhHHHHHHHHHHccCCHHHHHHHHHhccC-------C--
Q 002975 490 YTFASLLSGASSIGAIGKGEQIHARIIKS------GF-ESNHCIYNALISMYSRCANVEAAFQVFKEMED-------R-- 553 (861)
Q Consensus 490 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~-- 553 (861)
.++..+...+...|++++|...+..+++. +- +....++..+...|...|++++|.+.|++..+ +
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34455555555555555555555555432 11 22345667777777777777777777776542 1
Q ss_pred --CchHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc----
Q 002975 554 --NVISWTSMITGFAKHGFAARALEIFYKMLAD------GIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEH---- 620 (861)
Q Consensus 554 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---- 620 (861)
...+|..+...|...|++++|+.+|++..+. +-.|+ ..++..+...+...|++++|..+|+.+.+..
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 2346777778888888888888888888764 11333 4567778888888888888888888876421
Q ss_pred --CCCCC-hhHHHHHHHHhhh------cCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Q 002975 621 --GIVQR-MEHYACMVDLLGR------SGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQD 688 (861)
Q Consensus 621 --~~~p~-~~~~~~l~~~~~r------~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 688 (861)
...+. ...+..+...+.. ...+.++...++... ..| ...+|..+...+...|+++.|...+++++++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 11222 2223333333222 334555666666654 223 34578888999999999999999999988753
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.92 E-value=2.8e-08 Score=100.63 Aligned_cols=203 Identities=13% Similarity=0.003 Sum_probs=147.4
Q ss_pred CCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHccCCHHHHHHHHHhccC--CC----ch
Q 002975 486 GTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESN---HCIYNALISMYSRCANVEAAFQVFKEMED--RN----VI 556 (861)
Q Consensus 486 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----~~ 556 (861)
+.+...+......+.+.|++++|...+..+++.. +.+ ...+..+..+|.+.|++++|...|+...+ |+ ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456677788888999999999999999998864 333 67788899999999999999999998874 32 34
Q ss_pred HHHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChh
Q 002975 557 SWTSMITGFAK--------HGFAARALEIFYKMLADGIKPNGI-TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRME 627 (861)
Q Consensus 557 ~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 627 (861)
.+..+..++.. .|++++|+..|++.++. .|+.. ....+.. +..+... -..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~--------------~~~~~~~-----~~~ 149 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQK--------------IRELRAK-----LAR 149 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHH--------------HHHHHHH-----HHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHH--------------HHHHHHH-----HHH
Confidence 67778888888 99999999999999984 56532 2222111 1111100 011
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHh----------CCHHHHHHHHHHHhccCCCCC
Q 002975 628 HYACMVDLLGRSGSLTEALEFIRSMP-LSAD----VLVWRTFLGACRVH----------GDTELGKHAAEMILEQDPQDP 692 (861)
Q Consensus 628 ~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~ 692 (861)
.+..+...|.+.|++++|+..++++. ..|+ ...|..+..++... |+++.|+..++++++..|+++
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 24456778888899999988887762 2232 44677777777765 899999999999999999986
Q ss_pred c---hHHHHHHHHHHcCChhH
Q 002975 693 A---AHILLSNLYASAGHWEY 710 (861)
Q Consensus 693 ~---~~~~L~~~y~~~g~~~~ 710 (861)
. ++..|..++...|++++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 4 44566666666665554
No 92
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.90 E-value=3.4e-08 Score=114.71 Aligned_cols=147 Identities=12% Similarity=-0.006 Sum_probs=81.2
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHH
Q 002975 555 VISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACM 632 (861)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l 632 (861)
...|..+...|.+.|++++|+..|++.++ ..|+ ...+..+..++...|++++|...|++..+. .| +...|..+
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~~~~~l 507 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT---FPGELAPKLAL 507 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCSHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHH
Confidence 34455555555555555555555555555 2332 334555555555555555555555555421 22 23444555
Q ss_pred HHHhhhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCC
Q 002975 633 VDLLGRSGSLTEALEFIRSMP-LS-ADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGH 707 (861)
Q Consensus 633 ~~~~~r~g~~~eA~~~~~~~~-~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~ 707 (861)
..+|.+.|++++ ++.++++. .. .+...|..+..++...|++++|+..++++++++|++..++..++.+|...|+
T Consensus 508 g~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 508 AATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 555555555555 55555542 22 2455666666667777777777777777777777777777777777655554
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.89 E-value=5.5e-08 Score=95.90 Aligned_cols=182 Identities=12% Similarity=-0.006 Sum_probs=122.4
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHhccC--CCc----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----HHH
Q 002975 524 HCIYNALISMYSRCANVEAAFQVFKEMED--RNV----ISWTSMITGFAKHGFAARALEIFYKMLADGIKPNG----ITY 593 (861)
Q Consensus 524 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~ 593 (861)
...+..+...+.+.|++++|...|+++.+ |+. ..+..+..+|.+.|++++|+..|++.++. .|+. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 34555667778888999999999988763 332 46777888888899999999999998884 4542 244
Q ss_pred HHHHHHHHh------------------cCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCC
Q 002975 594 IAVLSACSH------------------AGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLS 655 (861)
Q Consensus 594 ~~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~ 655 (861)
..+..++.. .|+.++|...|+.+.+.+.-.+. .+... .+.+.+.+..
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~--a~~a~----~~l~~~~~~~--------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY--TTDAT----KRLVFLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTT--HHHHH----HHHHHHHHHH---------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh--HHHHH----HHHHHHHHHH---------
Confidence 445555543 34566666666666533211111 11111 0000000000
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 002975 656 ADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDP---AAHILLSNLYASAGHWEYVANIRKRMKERNLI 724 (861)
Q Consensus 656 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~ 724 (861)
......+...+...|+++.|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01113456678899999999999999999999986 56889999999999999999999988876543
No 94
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.89 E-value=2.5e-08 Score=102.51 Aligned_cols=172 Identities=10% Similarity=-0.014 Sum_probs=130.9
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 002975 542 AAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEH 620 (861)
Q Consensus 542 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 620 (861)
...+.+......+...+..+...+.+.|++++|+..|++.++ ..|+ ...+..+..++...|++++|...++.+..
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~-- 179 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL-- 179 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--
Confidence 334444444444455666777778888888888888888888 4564 45777788888888888888888887763
Q ss_pred CCCCChhHHHHH-HHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC--CchH
Q 002975 621 GIVQRMEHYACM-VDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD--PAAH 695 (861)
Q Consensus 621 ~~~p~~~~~~~l-~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~ 695 (861)
..|+....... .-.+.+.|+.++|.+.+++.. .+.+...+..|..++...|+.+.|+..++++++.+|++ ..++
T Consensus 180 -~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 180 -QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp -GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred -hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 34544333222 223667777788888877763 34467899999999999999999999999999999998 8899
Q ss_pred HHHHHHHHHcCChhHHHHHHHHH
Q 002975 696 ILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 696 ~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
..|+.+|...|+.++|...+++.
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHH
Confidence 99999999999999998876643
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.87 E-value=3.9e-07 Score=91.96 Aligned_cols=173 Identities=9% Similarity=0.044 Sum_probs=104.2
Q ss_pred HHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002975 543 AFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYD 618 (861)
Q Consensus 543 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 618 (861)
|...|++... ++..++..+..++...|++++|++++.+.+..|..++ ...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4555555442 3344445556666667777777777766655442222 34555666666777777777777777652
Q ss_pred hcCCCC-----ChhHHHHHHHH----hhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcc-
Q 002975 619 EHGIVQ-----RMEHYACMVDL----LGRSGSLTEALEFIRSMP-LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQ- 687 (861)
Q Consensus 619 ~~~~~p-----~~~~~~~l~~~----~~r~g~~~eA~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 687 (861)
..| +..+...+..+ ....+++.+|..+|+++. ..|+...-..|++++...|++++|+..++.+.++
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 234 12333333322 222337777777777763 3344222333444677778888888888877766
Q ss_pred ---------CCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 688 ---------DPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 688 ---------~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+|+|+.++..++.++...|+ +|.++++++++
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 47777777777777777776 77788777776
No 96
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.82 E-value=3.3e-07 Score=92.46 Aligned_cols=240 Identities=6% Similarity=-0.013 Sum_probs=154.0
Q ss_pred HcCCHHHHHHHHHhcCCCCee-hHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHH
Q 002975 435 RSGRMEDARKAFESLFEKNLV-SYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHA 513 (861)
Q Consensus 435 ~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 513 (861)
-.|.+..++.-...+...+.. .-.-+.++|...|++... ..-.|....+..+...+ ..+ +...++
T Consensus 25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~l~ 90 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEELE 90 (310)
T ss_dssp TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHHHH
T ss_pred HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHHHH
Confidence 357777776655555332222 222234667767766531 12234433433333333 222 455566
Q ss_pred HHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCC-----CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 002975 514 RIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDR-----NVISWTSMITGFAKHGFAARALEIFYKMLADGIKP 588 (861)
Q Consensus 514 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 588 (861)
.+...+ .++......+..+|...|++++|++++.+.... +...+-.++..|.+.|+.+.|.+.+++|.+ ..|
T Consensus 91 ~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~~ 167 (310)
T 3mv2_B 91 NLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AIE 167 (310)
T ss_dssp HTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSC
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCc
Confidence 555544 444555567788888889999999888877432 345666778888889999999999999887 567
Q ss_pred -----ChHHHHHHHHH--HHhcC--CHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCC-----
Q 002975 589 -----NGITYIAVLSA--CSHAG--LISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPL----- 654 (861)
Q Consensus 589 -----~~~t~~~ll~a--~~~~g--~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~----- 654 (861)
+..+...+..+ ....| ++.+|..+|+++.+. .|+......+..++.+.|++++|.+.++.+..
T Consensus 168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 35555666655 33334 788899999888743 34433333444478888999999988876421
Q ss_pred ------CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHH
Q 002975 655 ------SA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHI 696 (861)
Q Consensus 655 ------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 696 (861)
.| |+.+.-.++......|+ .|.+..+++.+.+|+++-...
T Consensus 245 ~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 245 EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 13 45566566666677787 889999999999999876554
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.82 E-value=1.4e-07 Score=83.76 Aligned_cols=129 Identities=19% Similarity=0.251 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHh
Q 002975 557 SWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLL 636 (861)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 636 (861)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+|+.+.+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------- 64 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----------------- 64 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----------------
Confidence 45566666667777777777777766632 223445555666666666666666666665522
Q ss_pred hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHH
Q 002975 637 GRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRK 716 (861)
Q Consensus 637 ~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~ 716 (861)
.+.+...|..+...+...|+.+.|...++++++..|+++..+..++.+|...|++++|.+.++
T Consensus 65 -----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 65 -----------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp -----------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -----------------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 112334455555555556666666666666666666666666666666666666666666665
Q ss_pred HHHh
Q 002975 717 RMKE 720 (861)
Q Consensus 717 ~m~~ 720 (861)
.+.+
T Consensus 128 ~~~~ 131 (136)
T 2fo7_A 128 KALE 131 (136)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 5543
No 98
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.81 E-value=1.4e-08 Score=92.81 Aligned_cols=122 Identities=10% Similarity=-0.001 Sum_probs=99.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhC
Q 002975 596 VLSACSHAGLISEGWKHFRSMYDEHGIVQR-MEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHG 672 (861)
Q Consensus 596 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g 672 (861)
|...+...|++++|+..++... ...|+ ...+-.+..+|.+.|++++|++.|++.. ..| ++.+|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4455667788999999988776 33443 3345568899999999999999999873 344 6889999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHH-HHHHHh
Q 002975 673 DTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANI-RKRMKE 720 (861)
Q Consensus 673 ~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~-~~~m~~ 720 (861)
+.+.|+..++++++++|+++.++..|+.+|...|++++|.+. .++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987765 465544
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.80 E-value=9.9e-08 Score=84.75 Aligned_cols=95 Identities=19% Similarity=0.259 Sum_probs=79.5
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc
Q 002975 628 HYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASA 705 (861)
Q Consensus 628 ~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~ 705 (861)
.|..+...+.+.|++++|.++++++. .+.+...|..+...+...|+.+.|...++++++..|+++..+..++.+|...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 35556677777777777777777652 2346778888889999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhCC
Q 002975 706 GHWEYVANIRKRMKERN 722 (861)
Q Consensus 706 g~~~~a~~~~~~m~~~~ 722 (861)
|++++|.+.++.+.+..
T Consensus 83 ~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD 99 (136)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 99999999999887643
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.78 E-value=3.6e-07 Score=88.95 Aligned_cols=172 Identities=7% Similarity=-0.046 Sum_probs=127.5
Q ss_pred HHHHHHhcc-CCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC----CHHHHHHHHHHHH
Q 002975 543 AFQVFKEME-DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAG----LISEGWKHFRSMY 617 (861)
Q Consensus 543 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m~ 617 (861)
|.+.|++.. ..+..++..|...|...+++++|+.+|++..+.| +...+..+...|.. + +.++|..+|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444454443 3466677777777777788888888888877755 44566666666666 5 7888888888775
Q ss_pred hhcCCCCChhHHHHHHHHhhh----cCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHH----hCCHHHHHHHHHHHh
Q 002975 618 DEHGIVQRMEHYACMVDLLGR----SGSLTEALEFIRSMPLSAD----VLVWRTFLGACRV----HGDTELGKHAAEMIL 685 (861)
Q Consensus 618 ~~~~~~p~~~~~~~l~~~~~r----~g~~~eA~~~~~~~~~~p~----~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 685 (861)
+. -+...+..|..+|.. .+++++|++++++.....+ +..+..|...+.. .+|.++|+..++++.
T Consensus 81 -~~---g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 -EA---GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp -HT---TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred -HC---CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 22 245566667777766 7788888888888753333 6788888888887 789999999999999
Q ss_pred ccCCCCCchHHHHHHHHHHc-C-----ChhHHHHHHHHHHhCCC
Q 002975 686 EQDPQDPAAHILLSNLYASA-G-----HWEYVANIRKRMKERNL 723 (861)
Q Consensus 686 ~~~p~~~~~~~~L~~~y~~~-g-----~~~~a~~~~~~m~~~~~ 723 (861)
++ |.++.++..|+.+|... | ++++|.+.+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 98 77888999999999875 3 89999999998877553
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.78 E-value=6.2e-08 Score=91.27 Aligned_cols=74 Identities=11% Similarity=0.034 Sum_probs=61.4
Q ss_pred HHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC--CchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 645 ALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD--PAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 645 A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
|++.+++.. ..| +...|..+..++...|+.+.|+..++++++++|+. +..+..|+.+|...|++++|...++..
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 455554432 234 57889999999999999999999999999999975 558999999999999999999888754
No 102
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.72 E-value=3.8e-07 Score=94.67 Aligned_cols=219 Identities=11% Similarity=-0.008 Sum_probs=153.9
Q ss_pred cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhc-ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHH
Q 002975 467 NLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASS-IGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQ 545 (861)
Q Consensus 467 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 545 (861)
.|++++|.+++++..+... .. +.. .++++.|...+..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4677888888887765321 10 111 45666666666554 456778899999888
Q ss_pred HHHhccC-----CC----chHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--hHHHHHHHHHHHhcCCHHHHHH
Q 002975 546 VFKEMED-----RN----VISWTSMITGFAKHGFAARALEIFYKMLADGI---KPN--GITYIAVLSACSHAGLISEGWK 611 (861)
Q Consensus 546 ~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~ 611 (861)
.|.+..+ .+ ..+|+.+...|...|++++|+..|++.++.-. .|. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8887652 12 34788888999999999999999998776311 222 3477888888888 99999999
Q ss_pred HHHHHHhhcCCCC----ChhHHHHHHHHhhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHHhCCHHHHHH
Q 002975 612 HFRSMYDEHGIVQ----RMEHYACMVDLLGRSGSLTEALEFIRSMP----LSAD----VLVWRTFLGACRVHGDTELGKH 679 (861)
Q Consensus 612 ~~~~m~~~~~~~p----~~~~~~~l~~~~~r~g~~~eA~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~ 679 (861)
+|++..+.+.-.. ....+..+..+|.+.|++++|++.+++.. ..++ ...|..++..+...|+++.|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9998874332111 13567888999999999999999998763 1122 2256666677778899999999
Q ss_pred HHHHHhccCCCCCch-----HHHHHHHHHHcCChhHHHHH
Q 002975 680 AAEMILEQDPQDPAA-----HILLSNLYASAGHWEYVANI 714 (861)
Q Consensus 680 ~~~~~~~~~p~~~~~-----~~~L~~~y~~~g~~~~a~~~ 714 (861)
.+++++ ++|+.... ...++..| ..|+.+++.++
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999 99976543 33445555 56776665553
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.72 E-value=2.5e-07 Score=107.35 Aligned_cols=191 Identities=12% Similarity=0.026 Sum_probs=140.2
Q ss_pred hcccchHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhc
Q 002975 500 SSIGAIGKGEQIHARII--------KSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKH 568 (861)
Q Consensus 500 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 568 (861)
...|+.++|.+.++.++ +.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 55666666666666665 322 44567788888888889999999999888763 4567888888889999
Q ss_pred CChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHH
Q 002975 569 GFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEAL 646 (861)
Q Consensus 569 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~ 646 (861)
|++++|+..|++.++ ..|+ ...+..+..++...|++++ ...|++..+. .| +...|..+..+|.+.|++++|+
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999988 5564 5678888888999999999 8889888732 34 4567888888999999999999
Q ss_pred HHHHhCC-CCCC-HHHHHHHHHHHHHhCC-----HHHHHHHHHHHhccCCCCCchHHH
Q 002975 647 EFIRSMP-LSAD-VLVWRTFLGACRVHGD-----TELGKHAAEMILEQDPQDPAAHIL 697 (861)
Q Consensus 647 ~~~~~~~-~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~~~~ 697 (861)
+.++++. ..|+ ...|..+..++...++ .+...++.+.+.++.++++..+..
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l 612 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQI 612 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHH
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 9999874 5665 5577777777655554 455555666666666666555443
No 104
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.71 E-value=1.5e-07 Score=82.76 Aligned_cols=93 Identities=5% Similarity=0.005 Sum_probs=60.5
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc
Q 002975 628 HYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASA 705 (861)
Q Consensus 628 ~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~ 705 (861)
.+......|.+.|++++|++.|++.. .+.++.+|..+..++...|+++.|+..++++++++|+++.+|..++.+|...
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 34445555556666666666655542 2335666666777777777777777777777777777777777777777777
Q ss_pred CChhHHHHHHHHHHh
Q 002975 706 GHWEYVANIRKRMKE 720 (861)
Q Consensus 706 g~~~~a~~~~~~m~~ 720 (861)
|++++|.+.+++..+
T Consensus 95 ~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 95 REWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777766554
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.71 E-value=1.4e-07 Score=107.60 Aligned_cols=159 Identities=11% Similarity=0.032 Sum_probs=125.3
Q ss_pred cCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHH
Q 002975 537 CANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKH 612 (861)
Q Consensus 537 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 612 (861)
.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4789999999998874 3567899999999999999999999999998 5565 66888999999999999999999
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHhcc
Q 002975 613 FRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-L-SADVLVWRTFLGACRVH---GDTELGKHAAEMILEQ 687 (861)
Q Consensus 613 ~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~-~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 687 (861)
|++..+.. +.+...+..+..+|.+.|++++|.+.+++.. . +.+...|..+...+... |+.+.|...++++++.
T Consensus 80 ~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99988432 2346788899999999999999999999873 3 34678899999999999 9999999999999999
Q ss_pred CCCCCchHHHHH
Q 002975 688 DPQDPAAHILLS 699 (861)
Q Consensus 688 ~p~~~~~~~~L~ 699 (861)
+|++...+..|+
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999999998887
No 106
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.70 E-value=6.3e-08 Score=88.11 Aligned_cols=95 Identities=13% Similarity=0.053 Sum_probs=81.6
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 002975 626 MEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYA 703 (861)
Q Consensus 626 ~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~ 703 (861)
...+..+...+.+.|++++|+..|++.. .+.+...|..+..++...|+++.|+..++++++++|+++.++..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 3455566777778888888888887753 34478899999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHh
Q 002975 704 SAGHWEYVANIRKRMKE 720 (861)
Q Consensus 704 ~~g~~~~a~~~~~~m~~ 720 (861)
..|++++|.+.++...+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999987765
No 107
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.69 E-value=9.6e-08 Score=86.80 Aligned_cols=94 Identities=7% Similarity=-0.073 Sum_probs=81.2
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 002975 627 EHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS 704 (861)
Q Consensus 627 ~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~ 704 (861)
..+..+...+.+.|++++|++.|+++. .+.++..|..+..++...|+++.|+..++++++++|+++.+|..++.+|..
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 455566667777777777777777763 334688999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHh
Q 002975 705 AGHWEYVANIRKRMKE 720 (861)
Q Consensus 705 ~g~~~~a~~~~~~m~~ 720 (861)
.|++++|.+.+++..+
T Consensus 117 lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQ 132 (151)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999998876
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.67 E-value=3e-07 Score=104.75 Aligned_cols=146 Identities=8% Similarity=-0.078 Sum_probs=94.6
Q ss_pred ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHH
Q 002975 502 IGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIF 578 (861)
Q Consensus 502 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 578 (861)
.|++++|.+.++++.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 366777888887776654 44567777888888888888888888887663 34567777888888888888888888
Q ss_pred HHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhc---CCHHHHHHHHHhC
Q 002975 579 YKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRS---GSLTEALEFIRSM 652 (861)
Q Consensus 579 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~---g~~~eA~~~~~~~ 652 (861)
++..+. .|+ ...+..+..++...|++++|.+.|++..+.. +.+...+..+..++... |+.++|.+.+++.
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 888773 454 5577778888888888888888888777332 12456677777778777 8888888887765
No 109
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.66 E-value=3.9e-07 Score=88.39 Aligned_cols=125 Identities=8% Similarity=0.018 Sum_probs=94.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhh
Q 002975 561 MITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGR 638 (861)
Q Consensus 561 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r 638 (861)
+...|.+.|++++|+..|++.++ ..|+ ...+..+..++...|++++|...|++..+. .| +...+..+...|..
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHH
Confidence 78888899999999999999888 4564 567888888899999999999999988743 44 45677778777766
Q ss_pred cCC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Q 002975 639 SGS--LTEALEFIRSMPLSADV--LVWRTFLGACRVHGDTELGKHAAEMILEQDPQD 691 (861)
Q Consensus 639 ~g~--~~eA~~~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 691 (861)
.|. .+++...++... .|++ ..|..+..++...|+++.|+..++++++++|++
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 554 445666666653 4443 344556667778899999999999999999964
No 110
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.65 E-value=5.1e-06 Score=84.76 Aligned_cols=210 Identities=13% Similarity=0.131 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC--CHHHHHHHHHhccC---CCchHHHHHHHHH----Hhc---CChHH
Q 002975 506 GKGEQIHARIIKSGFESNHCIYNALISMYSRCA--NVEAAFQVFKEMED---RNVISWTSMITGF----AKH---GFAAR 573 (861)
Q Consensus 506 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~~~ 573 (861)
++|.++.+.++..+ +.+..+|+.--..+...| +++++++.++.+.. ++..+|+.-...+ ... +++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 34445555554443 334445555555555555 66666666666652 3445555544333 333 56677
Q ss_pred HHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHH--HHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCC------HHH
Q 002975 574 ALEIFYKMLADGIKP-NGITYIAVLSACSHAGLIS--EGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGS------LTE 644 (861)
Q Consensus 574 A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~--~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~------~~e 644 (861)
++.+++++++. .| |..+|..-...+.+.|.++ +++++++.+.+.. .-+...|+.-..++.+.|+ +++
T Consensus 129 EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 129 EFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 77777777763 33 4456666656666666666 7777777776322 1233344444444444444 777
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHhccC---CCCCchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 645 ALEFIRSMP--LSADVLVWRTFLGACRVHGD-TELGKHAAEMILEQD---PQDPAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 645 A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~---p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
++++++++- .+-|...|+-+...+...|+ .+.....++++++++ |.++.++..|+.+|.+.|+.++|.++++.+
T Consensus 205 El~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 205 ELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 777776652 34477888888888877775 444556777777766 777788888888888888888888888877
Q ss_pred Hh
Q 002975 719 KE 720 (861)
Q Consensus 719 ~~ 720 (861)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 111
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.64 E-value=2.8e-07 Score=81.07 Aligned_cols=108 Identities=13% Similarity=0.020 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 002975 592 TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACR 669 (861)
Q Consensus 592 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~ 669 (861)
.+......+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|++.+++.. .+.+...|..++.++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 44445555555555555555555554221 1133445555555555555555555555542 2335778999999999
Q ss_pred HhCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 002975 670 VHGDTELGKHAAEMILEQDPQDPAAHILLSNL 701 (861)
Q Consensus 670 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 701 (861)
..|+++.|+..++++++++|++..++..|+++
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 99999999999999999999999998888765
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.61 E-value=1.5e-06 Score=85.51 Aligned_cols=186 Identities=11% Similarity=-0.034 Sum_probs=134.0
Q ss_pred CHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHccCCHHHHHHHHHhccC--CCch----HHH
Q 002975 488 SAYTFASLLSGASSIGAIGKGEQIHARIIKSGFES--NHCIYNALISMYSRCANVEAAFQVFKEMED--RNVI----SWT 559 (861)
Q Consensus 488 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~----~~~ 559 (861)
+...+..+...+.+.|++++|...++.+++..... ....+..+..+|.+.|++++|...|++..+ |+.. +|.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34556667778899999999999999999864221 235778889999999999999999999873 4322 455
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHHcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 002975 560 SMITGFAK------------------HGFAARALEIFYKMLADGIKPNGI-TYIAVLSACSHAGLISEGWKHFRSMYDEH 620 (861)
Q Consensus 560 ~li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 620 (861)
.+..++.. .|++++|+..|+++++ ..|+.. ....... .+. +...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~----l~~------~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKR----LVF------LKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHH----HHH------HHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHH----HHH------HHHHHH---
Confidence 55555554 5789999999999998 567643 2221111 100 111111
Q ss_pred CCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCch
Q 002975 621 GIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSAD----VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAA 694 (861)
Q Consensus 621 ~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 694 (861)
.....+...|.+.|++++|+..++++. ..|+ ...+..+..++...|+.+.|+..++++....|++...
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 112346778899999999999998863 3333 2468888999999999999999999999999987653
No 113
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.61 E-value=1.5e-06 Score=89.38 Aligned_cols=158 Identities=8% Similarity=-0.042 Sum_probs=108.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC-CCCChH----HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC----hhHHHHH
Q 002975 562 ITGFAKHGFAARALEIFYKMLADG-IKPNGI----TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR----MEHYACM 632 (861)
Q Consensus 562 i~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l 632 (861)
+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...|+...+...-.++ ...|+.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 556667777777777777776632 112211 2223555566666777777777777642221222 2356777
Q ss_pred HHHhhhcCCHHHHHHHHHhCC-------C-CCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC------CchHHH
Q 002975 633 VDLLGRSGSLTEALEFIRSMP-------L-SAD-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD------PAAHIL 697 (861)
Q Consensus 633 ~~~~~r~g~~~eA~~~~~~~~-------~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~ 697 (861)
...|.+.|++++|++.++++. . .+. ..+|..++..|...|+++.|+..+++++++.+.. +.+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 777777888777777776652 1 111 3477888999999999999999999999876543 567889
Q ss_pred HHHHHHHcCC-hhHHHHHHHHHH
Q 002975 698 LSNLYASAGH-WEYVANIRKRMK 719 (861)
Q Consensus 698 L~~~y~~~g~-~~~a~~~~~~m~ 719 (861)
++.+|...|+ +++|.+.+++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 9999999995 699998887664
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.60 E-value=7.6e-07 Score=86.62 Aligned_cols=123 Identities=8% Similarity=-0.082 Sum_probs=87.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHh
Q 002975 594 IAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVH 671 (861)
Q Consensus 594 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~ 671 (861)
..+...+...|++++|...|+.. +.|+...+..+...|.+.|++++|++.+++.. .+.+...|..+..++...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 33444555555666665555443 23445555556666666666666666665542 233567788888888888
Q ss_pred CCHHHHHHHHHHHhccCCCCC----------------chHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 672 GDTELGKHAAEMILEQDPQDP----------------AAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 672 g~~~~a~~~~~~~~~~~p~~~----------------~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
|+++.|+..+++++++.|++. ..+..++.+|...|++++|.+.++...+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 999999999999999888877 88889999999999999999998887764
No 115
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.60 E-value=8e-07 Score=86.18 Aligned_cols=183 Identities=11% Similarity=0.001 Sum_probs=118.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC
Q 002975 459 TMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCA 538 (861)
Q Consensus 459 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 538 (861)
.....+...|++++|+..|++.... .|+........ .... .........+.+...|.+.|
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~-~~~~-----------------~~~~~~~~~~~lg~~~~~~g 68 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT-NVDK-----------------NSEISSKLATELALAYKKNR 68 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH-HSCT-----------------TSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh-hhcc-----------------hhhhhHHHHHHHHHHHHHCC
Confidence 3445667788888888888887754 23322111000 0000 00112233445888899999
Q ss_pred CHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCC--HHHHHHH
Q 002975 539 NVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGL--ISEGWKH 612 (861)
Q Consensus 539 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~--~~~a~~~ 612 (861)
++++|...|++..+ .+...|..+...|...|++++|+..|++.++ +.|+ ..++..+..++...|. .+++...
T Consensus 69 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 146 (208)
T 3urz_A 69 NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLETD 146 (208)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999998763 3567888999999999999999999999998 5665 5678778877766554 3344555
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 002975 613 FRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM-PLSADVLVWRTFLG 666 (861)
Q Consensus 613 ~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~-~~~p~~~~~~~ll~ 666 (861)
++... ...|....+..+...+...|++++|++.|++. ...|+......|..
T Consensus 147 ~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 147 YKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 54433 22222223344556667789999999999886 47788665555444
No 116
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.60 E-value=4.3e-07 Score=81.88 Aligned_cols=94 Identities=10% Similarity=-0.032 Sum_probs=78.9
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 002975 627 EHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS 704 (861)
Q Consensus 627 ~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~ 704 (861)
..+..+...+.+.|++++|++.|++.. .+.+...|..+..++...|+++.|+..++++++++|+++..+..++.+|..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 344455666777777777777777652 334678899999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHh
Q 002975 705 AGHWEYVANIRKRMKE 720 (861)
Q Consensus 705 ~g~~~~a~~~~~~m~~ 720 (861)
.|++++|.+.++...+
T Consensus 99 ~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 99 LGDLDGAESGFYSARA 114 (142)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999988765
No 117
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.58 E-value=9.8e-08 Score=97.62 Aligned_cols=190 Identities=8% Similarity=-0.034 Sum_probs=127.1
Q ss_pred chhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHH
Q 002975 523 NHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLS 598 (861)
Q Consensus 523 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 598 (861)
+...+..+...|.+.|++++|...|++... .+...|..+...|...|++++|+..+++.++ ..|+ ...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 345566677777788888888888877652 3566777788888888888888888888877 4554 557777788
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCCh-hHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHH
Q 002975 599 ACSHAGLISEGWKHFRSMYDEHGIVQRM-EHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELG 677 (861)
Q Consensus 599 a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 677 (861)
++...|++++|...|+...+.. |+. ..+...+....+.++...... ........+..+...+... ..|+.+.|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHH--HHHHHHHH
Confidence 8888888888888887776322 211 011111121112111111111 2223344455555444333 26889999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHc-CChhHHHHHHHHHHh
Q 002975 678 KHAAEMILEQDPQDPAAHILLSNLYASA-GHWEYVANIRKRMKE 720 (861)
Q Consensus 678 ~~~~~~~~~~~p~~~~~~~~L~~~y~~~-g~~~~a~~~~~~m~~ 720 (861)
...++++++++|++......+..++... +++++|.+++..+.+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999888888888888887 789999999987765
No 118
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.57 E-value=1.6e-06 Score=88.77 Aligned_cols=160 Identities=9% Similarity=-0.035 Sum_probs=110.0
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--CCchHHHH-HHHHH
Q 002975 489 AYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED--RNVISWTS-MITGF 565 (861)
Q Consensus 489 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~ 565 (861)
...+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...|+++.. |+...+.. ....+
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence 3445555666667777777777777777665 45677788888888888888888888888764 44332222 22335
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHH
Q 002975 566 AKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTE 644 (861)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~e 644 (861)
...++.++|+..|++..+ ..|+ ...+..+..++...|++++|...|+.+.+...-..+...+..++.+|...|+.++
T Consensus 196 ~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HhhcccCccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 677777888888888887 4454 5677778888888888888888888887443222224556666677777777666
Q ss_pred HHHHHHh
Q 002975 645 ALEFIRS 651 (861)
Q Consensus 645 A~~~~~~ 651 (861)
|...+++
T Consensus 274 a~~~~r~ 280 (287)
T 3qou_A 274 LASXYRR 280 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 119
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.56 E-value=3.3e-06 Score=82.02 Aligned_cols=172 Identities=8% Similarity=-0.058 Sum_probs=118.8
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC-CCchHHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 002975 508 GEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED-RNVISWTSMITGFAKHG----FAARALEIFYKML 582 (861)
Q Consensus 508 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 582 (861)
|.+.+....+.| ++..+..|..+|...+++++|.+.|++..+ .+..++..|...|.. + ++++|+.+|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444555555543 556666777777777777888777776654 355667777777766 5 7888888888887
Q ss_pred HcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCCCC---hhHHHHHHHHhhh----cCCHHHHHHHHHh
Q 002975 583 ADGIKPNGITYIAVLSACSH----AGLISEGWKHFRSMYDEHGIVQR---MEHYACMVDLLGR----SGSLTEALEFIRS 651 (861)
Q Consensus 583 ~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l~~~~~r----~g~~~eA~~~~~~ 651 (861)
+.| +...+..|...+.. .+++++|..+|++.. ...|. ...+..|..+|.. .+++++|+++|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~---~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAA---RDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT---SSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH---HcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 754 45566667777766 678888888888776 23332 5666777777777 7788888888887
Q ss_pred CC-CCCCHHHHHHHHHHHHHh-C-----CHHHHHHHHHHHhccCC
Q 002975 652 MP-LSADVLVWRTFLGACRVH-G-----DTELGKHAAEMILEQDP 689 (861)
Q Consensus 652 ~~-~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~p 689 (861)
.. ...++..+..|...|... | |.++|+..++++.+...
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 63 224555666777766543 3 88999999888888754
No 120
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.56 E-value=1.8e-06 Score=88.85 Aligned_cols=163 Identities=8% Similarity=-0.049 Sum_probs=110.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-h----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--CCC--hh
Q 002975 557 SWTSMITGFAKHGFAARALEIFYKMLADGIKPN-G----ITYIAVLSACSHAGLISEGWKHFRSMYDEHGI--VQR--ME 627 (861)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~--~~ 627 (861)
.+...+..+...|++++|++.+++.++.....+ . ..+..+...+...|++++|...++...+...- .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456667777777777777777766421111 1 12334455566777888888877776532111 111 34
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC------CC
Q 002975 628 HYACMVDLLGRSGSLTEALEFIRSMP----LSAD-----VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ------DP 692 (861)
Q Consensus 628 ~~~~l~~~~~r~g~~~eA~~~~~~~~----~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 692 (861)
.|..+...|...|++++|++.++++. ..|+ ..++..++..|...|+++.|+..+++++++.++ -+
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 67777778888888888888777652 1222 257888889999999999999999999887543 15
Q ss_pred chHHHHHHHHHHcCChhHH-HHHHHHHH
Q 002975 693 AAHILLSNLYASAGHWEYV-ANIRKRMK 719 (861)
Q Consensus 693 ~~~~~L~~~y~~~g~~~~a-~~~~~~m~ 719 (861)
.+|..++.+|...|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6788999999999999999 77666543
No 121
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.56 E-value=1.5e-05 Score=81.30 Aligned_cols=228 Identities=11% Similarity=0.046 Sum_probs=167.8
Q ss_pred cCChhHHHHHHHHHhhcCCCCC-HHHHHHHHHHhhccc--chHHHHHHHHHHHHhCCCCchhHHHHHHHHH----Hcc--
Q 002975 467 NLNSEKAFELLHEIEDTGVGTS-AYTFASLLSGASSIG--AIGKGEQIHARIIKSGFESNHCIYNALISMY----SRC-- 537 (861)
Q Consensus 467 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y----~~~-- 537 (861)
....++|++++.++... .|+ ...++.--..+...+ +++++.+.++.++..+ +.+..+|+.-...+ .+.
T Consensus 46 ~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 46 EEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence 34456888888888754 344 344565556666667 8888888888888765 44556666554444 455
Q ss_pred -CCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC------
Q 002975 538 -ANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAA--RALEIFYKMLADGIKPNGITYIAVLSACSHAGL------ 605 (861)
Q Consensus 538 -g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------ 605 (861)
+++++++++++.+.+ +|..+|+--...+.+.|.++ ++++.++++++.. .-|...|..-.....+.|.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhh
Confidence 788999999998874 56778888888888888888 9999999999854 2245567666666667666
Q ss_pred HHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHH-HHHHHHhCC-C----CCCHHHHHHHHHHHHHhCCHHHHHH
Q 002975 606 ISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTE-ALEFIRSMP-L----SADVLVWRTFLGACRVHGDTELGKH 679 (861)
Q Consensus 606 ~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~e-A~~~~~~~~-~----~p~~~~~~~ll~~~~~~g~~~~a~~ 679 (861)
+++++++++.+.... +-+...|+.+..++.+.|+..+ +.++.++.. . ..++..+..++.++.+.|+.++|+.
T Consensus 202 ~~eEl~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 899999998887432 3356677777788888887444 556777653 1 3467889999999999999999999
Q ss_pred HHHHHhc-cCCCCCchHHHHHH
Q 002975 680 AAEMILE-QDPQDPAAHILLSN 700 (861)
Q Consensus 680 ~~~~~~~-~~p~~~~~~~~L~~ 700 (861)
+++.+.+ .+|.....+...++
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHhccChHHHHHHHHHHh
Confidence 9999996 89988777665443
No 122
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.54 E-value=5.1e-05 Score=83.78 Aligned_cols=202 Identities=12% Similarity=0.046 Sum_probs=112.3
Q ss_pred hHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHH-HHHHHh
Q 002975 471 EKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAA-FQVFKE 549 (861)
Q Consensus 471 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A-~~~~~~ 549 (861)
+.+..+|+++.... +-+...|...+.-+.+.|+.+.|..++++.++. +.+...+.. |+...+.++. ..+.+.
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHH
Confidence 34566777776542 344566666666677778888888888888877 334333322 2221111111 111111
Q ss_pred cc------------CCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 002975 550 ME------------DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACS-HAGLISEGWKHFRSM 616 (861)
Q Consensus 550 ~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~m 616 (861)
.. ......|...+..+.+.+..+.|..+|++. +. ...+...|......-. ..++.+.|..+|+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 10 001234556666666667777787787777 31 1122233332111111 223577778888777
Q ss_pred HhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 002975 617 YDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMIL 685 (861)
Q Consensus 617 ~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 685 (861)
.+.++-. ...+...++...+.|+.+.|..+|+++. .....|...+..-..+|+.+.+..++++.+
T Consensus 347 l~~~~~~--~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 347 LLKHPDS--TLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7554322 3345556677777777777777777763 245677777776677777776666555544
No 123
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.54 E-value=6.3e-07 Score=78.80 Aligned_cols=94 Identities=11% Similarity=-0.036 Sum_probs=78.8
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 002975 627 EHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS 704 (861)
Q Consensus 627 ~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~ 704 (861)
..+..+...+.+.|++++|++.|++.. .+.+...|..+..++...|+++.|+..++++++++|+++.+|..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 345556667777777777777777652 334678899999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHh
Q 002975 705 AGHWEYVANIRKRMKE 720 (861)
Q Consensus 705 ~g~~~~a~~~~~~m~~ 720 (861)
.|++++|.+.+++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 9999999999987765
No 124
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.51 E-value=7.2e-07 Score=92.58 Aligned_cols=197 Identities=6% Similarity=-0.078 Sum_probs=151.6
Q ss_pred cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 002975 501 SIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYK 580 (861)
Q Consensus 501 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 580 (861)
..|++++|.+++.+..+..- .. .+...+++++|...|... ...|...|++++|+..|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 35788899999988876421 11 111258899999888764 5678899999999999998
Q ss_pred HHHcCC---CC-C-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC--C--ChhHHHHHHHHhhhcCCHHHHHHHHHh
Q 002975 581 MLADGI---KP-N-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIV--Q--RMEHYACMVDLLGRSGSLTEALEFIRS 651 (861)
Q Consensus 581 m~~~g~---~p-~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~--p--~~~~~~~l~~~~~r~g~~~eA~~~~~~ 651 (861)
..+... .+ . ..+|..+...|...|++++|...|++..+.+.-. + ...++..+..+|.+ |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 876311 11 1 3478889999999999999999999887433211 1 13567888889988 999999999987
Q ss_pred CC----CCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCc------hHHHHHHHHHHcCChhHHHHHHHH
Q 002975 652 MP----LSAD----VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPA------AHILLSNLYASAGHWEYVANIRKR 717 (861)
Q Consensus 652 ~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~L~~~y~~~g~~~~a~~~~~~ 717 (861)
.. ...+ ..++..+...+...|+++.|+..+++++++.|++.. .+..++.+|...|++++|.+.+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 62 1111 457888999999999999999999999998776543 666788899999999999999987
Q ss_pred HH
Q 002975 718 MK 719 (861)
Q Consensus 718 m~ 719 (861)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 75
No 125
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.50 E-value=7.6e-06 Score=79.39 Aligned_cols=146 Identities=7% Similarity=-0.037 Sum_probs=108.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcC
Q 002975 526 IYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHAG 604 (861)
Q Consensus 526 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g 604 (861)
.+..+...|...|++++|...|++...++...|..+...|...|++++|+..|++..+. .| +...+..+..++...|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcc
Confidence 34556677888899999999998888888888888888888899999999999888884 34 3567778888888888
Q ss_pred CHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002975 605 LISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSA-DVLVWRTFLGACRVHGDTELGKHAAEM 683 (861)
Q Consensus 605 ~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 683 (861)
++++|...|+...+...-.+... +...|. ...| ...+|..+..++...|+.+.|...+++
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~--------~~~~~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLID--------YKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEE--------CGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCccHHH--------HHHhcc-----------ccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 88888888888774321111110 000000 1223 246788888899999999999999999
Q ss_pred HhccCCCCC
Q 002975 684 ILEQDPQDP 692 (861)
Q Consensus 684 ~~~~~p~~~ 692 (861)
+++++|++.
T Consensus 147 al~~~p~~~ 155 (213)
T 1hh8_A 147 ATSMKSEPR 155 (213)
T ss_dssp HHTTCCSGG
T ss_pred HHHcCcccc
Confidence 999999763
No 126
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.50 E-value=9.6e-07 Score=87.86 Aligned_cols=180 Identities=8% Similarity=0.008 Sum_probs=134.2
Q ss_pred ccCCHHHHHHHHHhccC--C-CchHHHHH-------HHHHHhcCChHHHHHHHHHHHHcCCCCCh---------------
Q 002975 536 RCANVEAAFQVFKEMED--R-NVISWTSM-------ITGFAKHGFAARALEIFYKMLADGIKPNG--------------- 590 (861)
Q Consensus 536 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 590 (861)
..++.+.|.+.|.+... | ....|+.+ ...+...++..+++..+++-.+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57888889999988873 3 34688877 4666666666677666666555 34431
Q ss_pred -------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCH----H
Q 002975 591 -------ITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADV----L 659 (861)
Q Consensus 591 -------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~----~ 659 (861)
.....+..++...|++++|.++|+.+.. ..|+....-.+..++.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1233456678889999999999987762 3354335555667889999999999999876544433 3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhccC--CC-CCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 660 VWRTFLGACRVHGDTELGKHAAEMILEQD--PQ-DPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 660 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
++..|..++...|+.++|+..++++.... |. .+.....++.++.+.|+.++|..+++.+..
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67778888999999999999999998644 55 455788999999999999999999998877
No 127
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.49 E-value=3.2e-07 Score=91.26 Aligned_cols=136 Identities=13% Similarity=-0.001 Sum_probs=99.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC--hhHHHHHHHHhh
Q 002975 560 SMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR--MEHYACMVDLLG 637 (861)
Q Consensus 560 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~ 637 (861)
.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+... ... .|. ...+..+..++.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~-~~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAG-KWP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGG-GCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhh-ccC-CcccHHHHHHHHHHHHH
Confidence 4556677888888888888887763 4655455556667888888888888887544 111 121 235666788888
Q ss_pred hcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 002975 638 RSGSLTEALEFIRSMP---LSAD--VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSN 700 (861)
Q Consensus 638 r~g~~~eA~~~~~~~~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 700 (861)
+.|++++|+..+++.. ..|. ...+..+..+++..|+.++|...++++++.+|+ +.....|.+
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 8999999998888763 2143 347778888899999999999999999999997 655555543
No 128
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.49 E-value=2.5e-06 Score=80.10 Aligned_cols=155 Identities=12% Similarity=0.014 Sum_probs=90.4
Q ss_pred hhhHHHHHHHHcCCHHHHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHH-hh
Q 002975 425 VGNSLISMYARSGRMEDARKAFESLFE---KNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSG-AS 500 (861)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~ 500 (861)
....+...+.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..|++..... |+.......... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 344566778888999999999988864 345678888888999999999999998876543 344322221111 11
Q ss_pred cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--CC---chHHHHHHHHHHhcCChHHHH
Q 002975 501 SIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED--RN---VISWTSMITGFAKHGFAARAL 575 (861)
Q Consensus 501 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~---~~~~~~li~~~~~~g~~~~A~ 575 (861)
..+....+...++.+++.. +.+...+..+...|...|++++|...|+++.+ |+ ...|..+...|...|+.++|+
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1112223445555555443 33455555555555555555555555555442 21 234555555555555555555
Q ss_pred HHHHHHH
Q 002975 576 EIFYKML 582 (861)
Q Consensus 576 ~~~~~m~ 582 (861)
..|++.+
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.49 E-value=1.4e-06 Score=77.14 Aligned_cols=113 Identities=11% Similarity=-0.022 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 002975 592 TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGAC 668 (861)
Q Consensus 592 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~ 668 (861)
.+..+...+...|++++|..+|+...+ ..| +...+..+...|...|++++|++.++++. .+.+..+|..+..++
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 344444444444444444444444431 122 23344444455555555555555554432 233567888888899
Q ss_pred HHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCC
Q 002975 669 RVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGH 707 (861)
Q Consensus 669 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~ 707 (861)
...|+++.|+..++++++++|++...+..++.+|...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999988764
No 130
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.47 E-value=6.8e-07 Score=93.91 Aligned_cols=143 Identities=15% Similarity=0.023 Sum_probs=100.7
Q ss_pred CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHH
Q 002975 554 NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMV 633 (861)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 633 (861)
+...|..+...|.+.|++++|+..|++.++. .|+...+ ..+++...- .. ....|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~~-~~--------~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKAQ-AL--------RLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHHH-HH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHHH-HH--------HHHHHHHHH
Confidence 3456777777777888888888888887773 4442100 000110000 00 124455666
Q ss_pred HHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHH
Q 002975 634 DLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYV 711 (861)
Q Consensus 634 ~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a 711 (861)
.+|.+.|++++|++.++++. .+.+...|..+..++...|+++.|+..++++++++|++..++..|+.+|...|++++|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777666652 2336778899999999999999999999999999999999999999999999999998
Q ss_pred H-HHHHHH
Q 002975 712 A-NIRKRM 718 (861)
Q Consensus 712 ~-~~~~~m 718 (861)
. +.++.|
T Consensus 284 ~~~~~~~~ 291 (336)
T 1p5q_A 284 EKKLYANM 291 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 4 455555
No 131
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.46 E-value=2.6e-06 Score=74.09 Aligned_cols=113 Identities=18% Similarity=0.226 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 002975 592 TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACR 669 (861)
Q Consensus 592 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~ 669 (861)
.+..+...+...|++++|..+|+.+.+.. +.+...+..+...+.+.|++++|..+++++. .+.+..+|..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 33444444444444444444444444221 1123344444555555555555555555442 2335678888888999
Q ss_pred HhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC
Q 002975 670 VHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAG 706 (861)
Q Consensus 670 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g 706 (861)
..|+.+.|...++++++.+|+++..+..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999988887654
No 132
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.44 E-value=3e-06 Score=78.37 Aligned_cols=94 Identities=12% Similarity=-0.001 Sum_probs=67.0
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHH--HHH
Q 002975 627 EHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLS--NLY 702 (861)
Q Consensus 627 ~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~--~~y 702 (861)
..+..+...+.+.|++++|++.+++.. .+.+..+|..+..++...|+++.|...++++++++|++...+..++ ..+
T Consensus 48 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 127 (166)
T 1a17_A 48 IYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 127 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 334444444444555555554444431 2335678888888999999999999999999999999988885544 448
Q ss_pred HHcCChhHHHHHHHHHHh
Q 002975 703 ASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 703 ~~~g~~~~a~~~~~~m~~ 720 (861)
...|++++|.+.+....+
T Consensus 128 ~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 128 VKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccchHH
Confidence 889999999998876543
No 133
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.42 E-value=3e-06 Score=74.48 Aligned_cols=116 Identities=8% Similarity=-0.084 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 002975 592 TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACR 669 (861)
Q Consensus 592 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~ 669 (861)
.+..+...+...|++++|..+|+...+.. +.+...+..+...+...|++++|.+.+++.. .+.+..+|..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 34444444444555555555555444221 1133444445555555555555555555432 2335678888888999
Q ss_pred HhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChh
Q 002975 670 VHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWE 709 (861)
Q Consensus 670 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~ 709 (861)
..|+.+.|...++++++++|+++..+..++.++...|+++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999988763
No 134
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.42 E-value=2.6e-05 Score=80.06 Aligned_cols=159 Identities=9% Similarity=-0.053 Sum_probs=119.1
Q ss_pred HHHHHHHccCCHHHHHHHHHhccCCC---c-----h-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hHHHH
Q 002975 529 ALISMYSRCANVEAAFQVFKEMEDRN---V-----I-SWTSMITGFAKHGFAARALEIFYKMLADGIK-PN----GITYI 594 (861)
Q Consensus 529 ~li~~y~~~g~~~~A~~~~~~~~~~~---~-----~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~ 594 (861)
..+..+...|++++|...+++..+.. . . .+..+...+...|++++|+..|++..+.... ++ ..++.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34677888999999999999876421 1 1 2334666677778999999999999984322 22 22688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhc----CCCCC-hhHHHHHHHHhhhcCCHHHHHHHHHhCC-------CCCC-HHHH
Q 002975 595 AVLSACSHAGLISEGWKHFRSMYDEH----GIVQR-MEHYACMVDLLGRSGSLTEALEFIRSMP-------LSAD-VLVW 661 (861)
Q Consensus 595 ~ll~a~~~~g~~~~a~~~~~~m~~~~----~~~p~-~~~~~~l~~~~~r~g~~~eA~~~~~~~~-------~~p~-~~~~ 661 (861)
.+..+|...|++++|..+|+.+.+.. +..+. ...|..+...|.+.|++++|++.+++.. ..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999999999987422 11122 2367888899999999999999988752 1222 6688
Q ss_pred HHHHHHHHHhC-CHHHHHHHHHHHhcc
Q 002975 662 RTFLGACRVHG-DTELGKHAAEMILEQ 687 (861)
Q Consensus 662 ~~ll~~~~~~g-~~~~a~~~~~~~~~~ 687 (861)
..++.++...| +.+.|...+++++++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 88999999999 569999999988764
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.38 E-value=3e-06 Score=79.59 Aligned_cols=94 Identities=9% Similarity=0.099 Sum_probs=61.7
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHH-HHHhCCH--HHHHHHHHHHhccCCCCCchHHHHHHHH
Q 002975 628 HYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGA-CRVHGDT--ELGKHAAEMILEQDPQDPAAHILLSNLY 702 (861)
Q Consensus 628 ~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~-~~~~g~~--~~a~~~~~~~~~~~p~~~~~~~~L~~~y 702 (861)
.+..+...|...|++++|.+.++++. .+.+...|..+..+ +...|+. +.|+..++++++++|+++..+..++.+|
T Consensus 46 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 125 (177)
T 2e2e_A 46 QWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDA 125 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 33334444444444444444444331 12245566667777 6677777 8888888888888888888888888888
Q ss_pred HHcCChhHHHHHHHHHHhC
Q 002975 703 ASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 703 ~~~g~~~~a~~~~~~m~~~ 721 (861)
...|++++|.+.++...+.
T Consensus 126 ~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 126 FMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHTTCHHHHHHHHHHHHHT
T ss_pred HHcccHHHHHHHHHHHHhh
Confidence 8888888888888777653
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.36 E-value=6.4e-06 Score=79.14 Aligned_cols=156 Identities=12% Similarity=-0.042 Sum_probs=83.8
Q ss_pred ccCCHHHHHH---HHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-hHHHHHHHHHHHhcCCHH
Q 002975 536 RCANVEAAFQ---VFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLAD----GIKPN-GITYIAVLSACSHAGLIS 607 (861)
Q Consensus 536 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~ 607 (861)
..|++++|.+ .+..-......+++.+...|...|++++|+..|++..+. |..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 333322223455666666666777777777776666552 11221 234555666666666666
Q ss_pred HHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 002975 608 EGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSA--DVLVWRTFLGACRVHGDTELGKHAAEMIL 685 (861)
Q Consensus 608 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 685 (861)
+|..++++..+...-.+ ..+ ...++..+...+...|+++.|+..+++++
T Consensus 84 ~A~~~~~~al~~~~~~~-----------------------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 84 AARRCFLEERELLASLP-----------------------------EDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHSC-----------------------------CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-----------------------------ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 66666655542211111 011 12344555556666666666666666666
Q ss_pred ccCCC--C----CchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 686 EQDPQ--D----PAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 686 ~~~p~--~----~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
++.+. + ...+..++.+|...|++++|.+.+++..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 54221 1 12346777788888888888777665543
No 137
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.36 E-value=1.1e-05 Score=82.80 Aligned_cols=162 Identities=9% Similarity=-0.046 Sum_probs=112.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhccC--CC-c------hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CC--hH
Q 002975 526 IYNALISMYSRCANVEAAFQVFKEMED--RN-V------ISWTSMITGFAKHGFAARALEIFYKMLADGIK---PN--GI 591 (861)
Q Consensus 526 ~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~--~~ 591 (861)
.+...+..|...|++++|.+.+++..+ +. . ..+..+...+...|++++|+..|++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444566777888888888888875542 11 1 12334555667778888998888888763211 11 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-----hhHHHHHHHHhhhcCCHHHHHHHHHhCC-------CCC-CH
Q 002975 592 TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR-----MEHYACMVDLLGRSGSLTEALEFIRSMP-------LSA-DV 658 (861)
Q Consensus 592 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l~~~~~r~g~~~eA~~~~~~~~-------~~p-~~ 658 (861)
++..+...|...|++++|..+|++..+.....|+ ...|..+...|.+.|++++|++.+++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7778888888889999999888887732222222 2477788888889999999988887652 111 15
Q ss_pred HHHHHHHHHHHHhCCHHHH-HHHHHHHhcc
Q 002975 659 LVWRTFLGACRVHGDTELG-KHAAEMILEQ 687 (861)
Q Consensus 659 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 687 (861)
.+|..+...+...|+.+.| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788888889999999999 7778877753
No 138
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.36 E-value=0.0002 Score=79.05 Aligned_cols=201 Identities=12% Similarity=0.004 Sum_probs=104.8
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHH-HHHHHhcC
Q 002975 372 AVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDA-RKAFESLF 450 (861)
Q Consensus 372 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~ 450 (861)
+..+|+++... .+-+...|...+.-+.+.|+.+.|..+++..++. +.+...+. .|+...+.++. ..+.+...
T Consensus 198 v~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~~ 270 (493)
T 2uy1_A 198 MHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKYS 270 (493)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHTC
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHHH
Confidence 44566665543 2233455555555556667777777777777766 33322222 22222111111 01111100
Q ss_pred --C-------C---CeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhccc-chHHHHHHHHHHHH
Q 002975 451 --E-------K---NLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIG-AIGKGEQIHARIIK 517 (861)
Q Consensus 451 --~-------~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~a~~~~~~~~~ 517 (861)
+ + ....|...+....+.+..+.|..+|.+. .. ...+...|......-...+ +.+.|..+++..++
T Consensus 271 ~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~ 348 (493)
T 2uy1_A 271 MGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLL 348 (493)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred hhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 0 0 1134555555555666677777777777 21 1123333332111111222 57777777777766
Q ss_pred hCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002975 518 SGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLA 583 (861)
Q Consensus 518 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 583 (861)
.. +.++..+...++...+.|+.+.|..+|+.+. .....|...+.--..+|+.+.+..+++++.+
T Consensus 349 ~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 349 KH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 53 3334455556666677777777777777763 2455666666666666777777666666654
No 139
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.36 E-value=1.4e-06 Score=96.23 Aligned_cols=91 Identities=12% Similarity=0.016 Sum_probs=65.2
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHH--H
Q 002975 627 EHYACMVDLLGRSGSLTEALEFIRSMP-LS-ADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNL--Y 702 (861)
Q Consensus 627 ~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~--y 702 (861)
..|..+..+|.+.|++++|++.++++. .. .+...|..+..++...|++++|+..++++++++|++..++..++.+ +
T Consensus 41 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~ 120 (477)
T 1wao_1 41 IYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 120 (477)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344444444455555555555544431 22 3567888999999999999999999999999999999999999988 8
Q ss_pred HHcCChhHHHHHHHH
Q 002975 703 ASAGHWEYVANIRKR 717 (861)
Q Consensus 703 ~~~g~~~~a~~~~~~ 717 (861)
.+.|++++|.+.++.
T Consensus 121 ~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 121 VKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHCCC------
T ss_pred HHHHHHHHHhccccc
Confidence 999999999998773
No 140
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.35 E-value=1.4e-06 Score=75.84 Aligned_cols=92 Identities=14% Similarity=-0.023 Sum_probs=79.9
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC
Q 002975 629 YACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAG 706 (861)
Q Consensus 629 ~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g 706 (861)
+..+...+.+.|++++|+..+++.. ..| +...|..+..++...|+.+.|+..++++++++|+++.++..|+.+|...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4456667778888888888888763 334 68899999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHh
Q 002975 707 HWEYVANIRKRMKE 720 (861)
Q Consensus 707 ~~~~a~~~~~~m~~ 720 (861)
++++|.+.++...+
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987765
No 141
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.34 E-value=2.6e-06 Score=78.88 Aligned_cols=94 Identities=13% Similarity=0.077 Sum_probs=64.5
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 002975 627 EHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS 704 (861)
Q Consensus 627 ~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~ 704 (861)
..+..+...+.+.|++++|++.|++.. .+.+...|..+..++...|+++.|+..++++++++|+++..|..++.+|..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344445555556666666666655542 223566777777777777777777777777777777777777777888888
Q ss_pred cCChhHHHHHHHHHHh
Q 002975 705 AGHWEYVANIRKRMKE 720 (861)
Q Consensus 705 ~g~~~~a~~~~~~m~~ 720 (861)
.|++++|.+.+++..+
T Consensus 92 ~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIE 107 (164)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 8888877777776654
No 142
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.33 E-value=5.3e-07 Score=86.73 Aligned_cols=170 Identities=9% Similarity=-0.041 Sum_probs=101.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Q 002975 528 NALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAG 604 (861)
Q Consensus 528 ~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 604 (861)
+..+......|++++|.+.++...+ .....|..+...+...|++++|+..|++.++. .|+...+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~-------- 77 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ-------- 77 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------
Confidence 3344455566777777777764432 23456777778888888888888888888873 3332100000
Q ss_pred CHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 002975 605 LISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAE 682 (861)
Q Consensus 605 ~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 682 (861)
..+.-.. .+ ....|..+..+|.+.|++++|++.+++.. .+.+...|..+..++...|+++.|+..++
T Consensus 78 ~~~~~~~---~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 78 ILLDKKK---NI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp HHHHHHH---HH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHH---HH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 0000000 00 12345556666666777777777666652 23467788889999999999999999999
Q ss_pred HHhccCCCCCchHHHHHHHHHHcCChhHHH-HHHHHH
Q 002975 683 MILEQDPQDPAAHILLSNLYASAGHWEYVA-NIRKRM 718 (861)
Q Consensus 683 ~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~-~~~~~m 718 (861)
++++++|++..++..++.++...|+.+++. ..++.|
T Consensus 147 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 147 KAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988888776 344444
No 143
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.32 E-value=8.4e-06 Score=70.00 Aligned_cols=93 Identities=9% Similarity=-0.009 Sum_probs=57.0
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc
Q 002975 628 HYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASA 705 (861)
Q Consensus 628 ~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~ 705 (861)
.+..+...+...|++++|.+.+++.. .+.+...|..+...+...|+++.|...++++++.+|+++..+..++.+|...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 34444455555555555555555542 2224556666666666666777777777777776776666666677777777
Q ss_pred CChhHHHHHHHHHHh
Q 002975 706 GHWEYVANIRKRMKE 720 (861)
Q Consensus 706 g~~~~a~~~~~~m~~ 720 (861)
|++++|.+.++...+
T Consensus 86 ~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 86 NRFEEAKRTYEEGLK 100 (118)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 777777666665544
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.31 E-value=1.9e-06 Score=78.15 Aligned_cols=104 Identities=8% Similarity=-0.041 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHH
Q 002975 592 TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMP-L-SADVLVWRTFLGAC 668 (861)
Q Consensus 592 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~-~p~~~~~~~ll~~~ 668 (861)
.+..+...+...|++++|...|+..... .| +...|..+..+|.+.|++++|++.++++. . +.++..|..+..++
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4444555555556666666655555422 22 33445555555666666666666665542 2 33567888888999
Q ss_pred HHhCCHHHHHHHHHHHhccCCCCCchHHHH
Q 002975 669 RVHGDTELGKHAAEMILEQDPQDPAAHILL 698 (861)
Q Consensus 669 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 698 (861)
...|+.+.|+..++++++++|+++......
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 129 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPEFXELS 129 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCcchHHH
Confidence 999999999999999999999887765443
No 145
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.30 E-value=3e-06 Score=76.81 Aligned_cols=104 Identities=11% Similarity=-0.008 Sum_probs=82.8
Q ss_pred CCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHH
Q 002975 586 IKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVW 661 (861)
Q Consensus 586 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~ 661 (861)
+.|+ ...+..+...+.+.|++++|...|+...+. .| +...|..+..+|.+.|++++|++.|+++. ..| ++..|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 4565 346777778888888888888888888733 34 45677788888888888888888888763 333 57789
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhccCCCCC
Q 002975 662 RTFLGACRVHGDTELGKHAAEMILEQDPQDP 692 (861)
Q Consensus 662 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 692 (861)
..+..++...|+.+.|+..+++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999763
No 146
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.29 E-value=1.7e-05 Score=76.07 Aligned_cols=129 Identities=12% Similarity=0.028 Sum_probs=75.6
Q ss_pred chhHHHHHHHHHHccCCHHHHHHHHHhccC---------CCchHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-
Q 002975 523 NHCIYNALISMYSRCANVEAAFQVFKEMED---------RNVISWTSMITGFAKHGFAARALEIFYKMLAD----GIKP- 588 (861)
Q Consensus 523 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p- 588 (861)
...++..+...|...|++++|...|++... ....+++.+...|...|++++|+..+++..+. +-.|
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 445566666666677777777666665542 12346667777778888888888888776653 1112
Q ss_pred C-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC----hhHHHHHHHHhhhcCCHHHHHHHHHh
Q 002975 589 N-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR----MEHYACMVDLLGRSGSLTEALEFIRS 651 (861)
Q Consensus 589 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~r~g~~~eA~~~~~~ 651 (861)
. ...+..+...+...|++++|..++++..+...-..+ ...+..+..++.+.|++++|.+.+++
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 172 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR 172 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 1 235666777777888888888877776532111111 11234444555555555555554443
No 147
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.28 E-value=5.8e-06 Score=73.62 Aligned_cols=96 Identities=13% Similarity=-0.021 Sum_probs=77.1
Q ss_pred ChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 002975 625 RMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLY 702 (861)
Q Consensus 625 ~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y 702 (861)
+...+..+...+...|++++|+..+++.. .+.+...|..+...+...|+++.|+..++++++++|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 34555566666666777777766666542 2335778888888999999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHh
Q 002975 703 ASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 703 ~~~g~~~~a~~~~~~m~~ 720 (861)
...|++++|.+.++...+
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 999999999999887765
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.28 E-value=6.4e-06 Score=77.29 Aligned_cols=129 Identities=10% Similarity=0.102 Sum_probs=91.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHH-hhhcCCH-
Q 002975 566 AKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDL-LGRSGSL- 642 (861)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~-~~r~g~~- 642 (861)
...|++++|+..|++..+. .| +...+..+...+...|++++|..+|+...+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcc
Confidence 3456777777777777763 34 35567777777777788888888777776432 1244556666666 6677877
Q ss_pred -HHHHHHHHhCC-C-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHH
Q 002975 643 -TEALEFIRSMP-L-SADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILL 698 (861)
Q Consensus 643 -~eA~~~~~~~~-~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 698 (861)
++|.+.++++. . +.+...|..+...+...|+++.|+..++++++++|+++.....+
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 88888877763 2 33577888899999999999999999999999999987765544
No 149
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.27 E-value=5.1e-06 Score=76.67 Aligned_cols=85 Identities=12% Similarity=0.138 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeEEEeCC
Q 002975 657 DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSWIEADN 736 (861)
Q Consensus 657 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~ 736 (861)
+..+|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|++++|.+.++...+.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------------- 126 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--------------- 126 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc---------------
Confidence 34688888999999999999999999999999999999999999999999999999999887662
Q ss_pred eEEEEEeCCCCCCChH-HHHHHHHHHHHHHHh
Q 002975 737 KVHKFHVGETSHPKTL-EIYAELDQLALKIKE 767 (861)
Q Consensus 737 ~~~~f~~~~~~~~~~~-~i~~~l~~l~~~~~~ 767 (861)
.|... .+...+..+...+++
T Consensus 127 -----------~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 127 -----------HPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp -----------CGGGHHHHHHHHHHHHHHHHH
T ss_pred -----------CCCCHHHHHHHHHHHHHHHHH
Confidence 35555 666777777766654
No 150
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.27 E-value=1.3e-05 Score=69.46 Aligned_cols=95 Identities=20% Similarity=0.279 Sum_probs=86.1
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 002975 626 MEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYA 703 (861)
Q Consensus 626 ~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~ 703 (861)
...+..+...+.+.|++++|.+.++++. .+.+..+|..+...+...|+++.|+..++++++.+|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 4567788899999999999999999873 34467889999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHh
Q 002975 704 SAGHWEYVANIRKRMKE 720 (861)
Q Consensus 704 ~~g~~~~a~~~~~~m~~ 720 (861)
..|++++|.+.++.+.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 99999999999998866
No 151
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.25 E-value=4.4e-06 Score=71.04 Aligned_cols=96 Identities=13% Similarity=0.023 Sum_probs=76.3
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC--CCchHHHHHHHH
Q 002975 627 EHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ--DPAAHILLSNLY 702 (861)
Q Consensus 627 ~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~L~~~y 702 (861)
..+..+...+.+.|++++|...+++.. .+.+..+|..+...+...|+++.|+..++++++++|+ +...+..++.+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 344555666667777777777766652 2345678888888899999999999999999999999 899999999999
Q ss_pred HHc-CChhHHHHHHHHHHhCC
Q 002975 703 ASA-GHWEYVANIRKRMKERN 722 (861)
Q Consensus 703 ~~~-g~~~~a~~~~~~m~~~~ 722 (861)
... |++++|.+.++...+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHhCCHHHHHHHHHHHhhcc
Confidence 999 99999999988876543
No 152
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.24 E-value=0.0001 Score=75.85 Aligned_cols=209 Identities=12% Similarity=0.137 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHccC-CHHHHHHHHHhccC---CCchHHHHHHHHHHhc-C-ChHHHHHHHHH
Q 002975 507 KGEQIHARIIKSGFESNHCIYNALISMYSRCA-NVEAAFQVFKEMED---RNVISWTSMITGFAKH-G-FAARALEIFYK 580 (861)
Q Consensus 507 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~~~~~ 580 (861)
+|.++.+.++..+ +.+..+|+.--..+...| .++++++.++.+.. ++..+|+.-...+... + +++++++++++
T Consensus 72 ~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k 150 (349)
T 3q7a_A 72 RALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHG 150 (349)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 3444444444433 333444444444444445 36666666665553 2344555554444444 4 56666666666
Q ss_pred HHHcCCCC-ChHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCC-------HHH
Q 002975 581 MLADGIKP-NGITYIAVLSACSHAGLIS--------EGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGS-------LTE 644 (861)
Q Consensus 581 m~~~g~~p-~~~t~~~ll~a~~~~g~~~--------~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~-------~~e 644 (861)
+++. .| |...|..-.....+.|.++ +++++++++.+.. .-+...|+....++.+.|+ +++
T Consensus 151 ~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 151 SLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccchHHHHH
Confidence 6652 33 3344444444444444433 6666666666321 1234445555555555554 677
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHHhCCH--------------------HHHHHHHHHHhccC------CCCCchHH
Q 002975 645 ALEFIRSMP--LSADVLVWRTFLGACRVHGDT--------------------ELGKHAAEMILEQD------PQDPAAHI 696 (861)
Q Consensus 645 A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~~~~~~ 696 (861)
++++++++- .+-|...|+-+-+.+...|+. ......+..+.... +..+-+..
T Consensus 227 ELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~ 306 (349)
T 3q7a_A 227 ELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALE 306 (349)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHH
Confidence 777776652 344778888877777766643 22223333333222 45556677
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHh
Q 002975 697 LLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 697 ~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
.|+++|.+.|+.++|.++++.+.+
T Consensus 307 ~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 307 YLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Confidence 999999999999999999998864
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.24 E-value=4.7e-06 Score=73.23 Aligned_cols=93 Identities=9% Similarity=-0.022 Sum_probs=76.1
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCc-------hHHHH
Q 002975 628 HYACMVDLLGRSGSLTEALEFIRSMP-L-SADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPA-------AHILL 698 (861)
Q Consensus 628 ~~~~l~~~~~r~g~~~eA~~~~~~~~-~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~L 698 (861)
.+..+...+.+.|++++|++.|+++. . +.+..+|..+..++...|+++.|+..++++++++|++.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 34556777777788888887777752 3 336788999999999999999999999999999998764 56778
Q ss_pred HHHHHHcCChhHHHHHHHHHHh
Q 002975 699 SNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 699 ~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+++|...|++++|.+.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 8999999999999999887654
No 154
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=1.4e-05 Score=72.02 Aligned_cols=76 Identities=11% Similarity=-0.056 Sum_probs=50.8
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 002975 628 HYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYA 703 (861)
Q Consensus 628 ~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~ 703 (861)
.+..+...|.+.|++++|++.+++.. .+.+...|..+..++...|+.+.|...++++++++|++...+..+..+..
T Consensus 67 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 67 LHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 33344444444555555554444431 22356677788888888899999999999999999988877777766543
No 155
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.23 E-value=1.3e-05 Score=70.25 Aligned_cols=95 Identities=14% Similarity=0.024 Sum_probs=85.6
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 002975 626 MEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYA 703 (861)
Q Consensus 626 ~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~ 703 (861)
...+..+...+...|++++|.+.+++.. .+.+..+|..+...+...|+.+.|+..++++++.+|+++..+..++.+|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 4566778889999999999999999863 34467889999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHh
Q 002975 704 SAGHWEYVANIRKRMKE 720 (861)
Q Consensus 704 ~~g~~~~a~~~~~~m~~ 720 (861)
..|++++|.+.++...+
T Consensus 92 ~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 99999999999998766
No 156
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.22 E-value=1.9e-05 Score=72.82 Aligned_cols=88 Identities=10% Similarity=0.124 Sum_probs=39.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhc
Q 002975 528 NALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHA 603 (861)
Q Consensus 528 ~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~ 603 (861)
..+...|...|++++|...|+...+ .+...|..+...+...|++++|+..|++..+. .| +...+..+..++...
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHh
Confidence 3344444444455555444444331 23344444444444455555555555544442 22 233444444444444
Q ss_pred CCHHHHHHHHHHHH
Q 002975 604 GLISEGWKHFRSMY 617 (861)
Q Consensus 604 g~~~~a~~~~~~m~ 617 (861)
|++++|..+|+...
T Consensus 95 ~~~~~A~~~~~~a~ 108 (166)
T 1a17_A 95 GKFRAALRDYETVV 108 (166)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 44444444444444
No 157
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.21 E-value=9.4e-06 Score=71.58 Aligned_cols=96 Identities=6% Similarity=0.008 Sum_probs=86.8
Q ss_pred ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 002975 625 RMEHYACMVDLLGRSGSLTEALEFIRSM-PLSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLY 702 (861)
Q Consensus 625 ~~~~~~~l~~~~~r~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y 702 (861)
+...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|+.+.|+..++++++++|+++..+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4567788889999999999999999986 3344 6788999999999999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHh
Q 002975 703 ASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 703 ~~~g~~~~a~~~~~~m~~ 720 (861)
...|++++|.+.++...+
T Consensus 95 ~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 999999999999998765
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=2e-05 Score=70.95 Aligned_cols=96 Identities=18% Similarity=0.088 Sum_probs=82.2
Q ss_pred ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 002975 625 RMEHYACMVDLLGRSGSLTEALEFIRSM-PLSAD----VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLS 699 (861)
Q Consensus 625 ~~~~~~~l~~~~~r~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~ 699 (861)
+...+..+...+.+.|++++|.+.+++. ...|+ ..+|..+...+...|+++.|+..++++++++|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4455666777777788888888877775 34565 578888999999999999999999999999999999999999
Q ss_pred HHHHHcCChhHHHHHHHHHHh
Q 002975 700 NLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 700 ~~y~~~g~~~~a~~~~~~m~~ 720 (861)
.+|...|++++|.+.++...+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999998766
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.20 E-value=5e-06 Score=74.75 Aligned_cols=108 Identities=12% Similarity=-0.044 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 002975 592 TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACR 669 (861)
Q Consensus 592 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~ 669 (861)
.+..+...+...|++++|...|+...... +.+...|..+..+|.+.|++++|++.+++.. .+.++..|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 34444555555566666666555555221 1133445555555666666666666665542 2335667888888999
Q ss_pred HhCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 002975 670 VHGDTELGKHAAEMILEQDPQDPAAHILLSNL 701 (861)
Q Consensus 670 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 701 (861)
..|+++.|+..++++++++|+++........+
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 99999999999999999999988776655443
No 160
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.20 E-value=1.4e-05 Score=68.57 Aligned_cols=75 Identities=16% Similarity=0.034 Sum_probs=51.3
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 002975 628 HYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLY 702 (861)
Q Consensus 628 ~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y 702 (861)
.+..+...+.+.|++++|.+.+++.. .+.+...|..+..++...|+.+.|...++++++++|+++..+..++.+.
T Consensus 40 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 40 LYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 33344444444444444444444431 2235667888888899999999999999999999999888887777654
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.19 E-value=1.1e-05 Score=74.64 Aligned_cols=107 Identities=12% Similarity=-0.066 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 002975 592 TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACR 669 (861)
Q Consensus 592 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~ 669 (861)
.+..+...+...|++++|+.+|+...+.. +.+...|..+..+|.+.|++++|++.+++.. .+.+...|..+..++.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34444444444444444444444444211 1133344444555555555555555555442 2335778889999999
Q ss_pred HhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 002975 670 VHGDTELGKHAAEMILEQDPQDPAAHILLSN 700 (861)
Q Consensus 670 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 700 (861)
..|+++.|+..++++++++|++...+...+.
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 9999999999999999999999997765544
No 162
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.15 E-value=0.00032 Score=71.86 Aligned_cols=226 Identities=12% Similarity=0.054 Sum_probs=138.3
Q ss_pred hcCCh-hHHHHHHHHHhhcCCCCCHHH-HHHHHHHhhccc----------chHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 002975 466 KNLNS-EKAFELLHEIEDTGVGTSAYT-FASLLSGASSIG----------AIGKGEQIHARIIKSGFESNHCIYNALISM 533 (861)
Q Consensus 466 ~~g~~-~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 533 (861)
+.|.+ ++|++++..+... .|+..| ++.--..+...+ .++++..+++.++... +-+..+|+.-.-+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34443 3677777777643 343332 232222222222 2567777777777765 5567777776667
Q ss_pred HHccC--CHHHHHHHHHhccC---CCchHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhc---
Q 002975 534 YSRCA--NVEAAFQVFKEMED---RNVISWTSMITGFAKHGF-AARALEIFYKMLADGIKP-NGITYIAVLSACSHA--- 603 (861)
Q Consensus 534 y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~--- 603 (861)
+.+.| .+++++.+++.+.+ +|..+|+--...+...|. ++++++.++++++. .| |...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhc
Confidence 77777 47888888888773 566778777777777777 58888888888884 34 444555554444443
Q ss_pred -----------CCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhc-----------CCHHHHHHHHHhCC-CCCCHH
Q 002975 604 -----------GLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRS-----------GSLTEALEFIRSMP-LSADVL 659 (861)
Q Consensus 604 -----------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~-----------g~~~eA~~~~~~~~-~~p~~~ 659 (861)
+.++++++++...... .| +...|+-+--++.+. +.++++++.++++- ..||.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~- 271 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN- 271 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-
T ss_pred cccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-
Confidence 4577777777777632 33 344454444444443 45778888777763 45553
Q ss_pred HHHHHHHHH-----HHhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 002975 660 VWRTFLGAC-----RVHGDTELGKHAAEMILEQDPQDPAAHILLSN 700 (861)
Q Consensus 660 ~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 700 (861)
.|.-+..+. ...|..+.....+.++.+++|...+.|..|..
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 454322222 13466777888888888888877777766654
No 163
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.14 E-value=1.3e-05 Score=81.68 Aligned_cols=191 Identities=11% Similarity=-0.025 Sum_probs=123.4
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHH
Q 002975 489 AYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGF 565 (861)
Q Consensus 489 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 565 (861)
...+..+...+...|++++|...+..+++.. +.+...+..+...|.+.|++++|...|++..+ .+...|..+..+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3445555566666677777777777766654 44778888899999999999999999998774 3567888899999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHH
Q 002975 566 AKHGFAARALEIFYKMLADGIKPNG-ITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTE 644 (861)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~e 644 (861)
...|++++|+..|++..+. .|+. ..+...+..... ..++.... ... ......+......+..++ .|+.++
T Consensus 83 ~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~---~~~~~~~~-~~~-~~~~~~~~~i~~~l~~l~--~~~~~~ 153 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALR---IAKKKRWN-SIE-ERRIHQESELHSYLTRLI--AAERER 153 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHH---HHHHHHHH-HHH-HTCCCCCCHHHHHHHHHH--HHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHH---HHHHHHHH-HHH-HHHHhhhHHHHHHHHHHH--HHHHHH
Confidence 9999999999999998873 3432 111111111111 11112221 122 223444555544444443 789999
Q ss_pred HHHHHHhC-CCCCCHH-HHHHHHHHHHHh-CCHHHHHHHHHHHhccCC
Q 002975 645 ALEFIRSM-PLSADVL-VWRTFLGACRVH-GDTELGKHAAEMILEQDP 689 (861)
Q Consensus 645 A~~~~~~~-~~~p~~~-~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p 689 (861)
|++.++++ ...|+.. ....+....... +..+.+..+++++.+..+
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~ 201 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRK 201 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTS
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 99988776 3566543 444454445554 678889999998887543
No 164
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.13 E-value=0.00049 Score=70.86 Aligned_cols=230 Identities=11% Similarity=0.051 Sum_probs=156.8
Q ss_pred HHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhccc-chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcc-C-C
Q 002975 463 AYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIG-AIGKGEQIHARIIKSGFESNHCIYNALISMYSRC-A-N 539 (861)
Q Consensus 463 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~-g-~ 539 (861)
...+.+..++|++++.++.... +-+...++.--..+...+ .++++.++++.++... +.+..+|+.-...+.+. + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 3344556678888888888653 223444555555566667 5888888888888765 55677777766666666 6 7
Q ss_pred HHHHHHHHHhccC---CCchHHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC---
Q 002975 540 VEAAFQVFKEMED---RNVISWTSMITGFAKHGFAA--------RALEIFYKMLADGIKPNGITYIAVLSACSHAGL--- 605 (861)
Q Consensus 540 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~--- 605 (861)
.++++++++.+.+ +|..+|+--...+.+.|.++ ++++.++++++.. .-|...|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 8899999998885 45567776665555555555 8999999999853 2256677777777777775
Q ss_pred ----HHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCC--------------------HHHHHHHHHhCCC------
Q 002975 606 ----ISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGS--------------------LTEALEFIRSMPL------ 654 (861)
Q Consensus 606 ----~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~--------------------~~eA~~~~~~~~~------ 654 (861)
+++++++++++... .| +...|+-+-.++.+.|+ ..+..++..++..
T Consensus 220 ~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred chHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 78888888888733 34 45566666566666554 3445555555431
Q ss_pred --CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHh-ccCCCCCchHHHH
Q 002975 655 --SADVLVWRTFLGACRVHGDTELGKHAAEMIL-EQDPQDPAAHILL 698 (861)
Q Consensus 655 --~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~L 698 (861)
.+.+..+..|+..|...|+.++|..+++.+. +.+|-....+...
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~ 343 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFR 343 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 2567788889999999999999999999987 7888665555443
No 165
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.13 E-value=2.3e-05 Score=68.51 Aligned_cols=111 Identities=9% Similarity=-0.023 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 002975 557 SWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDL 635 (861)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 635 (861)
.|..+...+.+.|++++|+..|++.++. .|+ ...|..+..++...|++++|...|+...+.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---------------- 67 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK---------------- 67 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----------------
Confidence 4455555555666666666666665552 332 344555555555555555555555544411
Q ss_pred hhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccC------CCCCchHHHHHHHHH
Q 002975 636 LGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQD------PQDPAAHILLSNLYA 703 (861)
Q Consensus 636 ~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~L~~~y~ 703 (861)
.+.+...|..+..++...|+++.|+..++++++++ |++......+..+..
T Consensus 68 ------------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 68 ------------------DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp ------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred ------------------CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 22346678888888888899999999999999988 877777776666543
No 166
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.12 E-value=2.1e-05 Score=86.39 Aligned_cols=143 Identities=18% Similarity=0.042 Sum_probs=98.3
Q ss_pred CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHH
Q 002975 554 NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMV 633 (861)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 633 (861)
+...|..+...|.+.|++++|+..|++.++ +.|+...+ . -++..+ .... ....|..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~----------~-~~~~~~-~~~~--------~~~~~~nla 324 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGL----------S-EKESKA-SESF--------LLAAFLNLA 324 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSC----------C-HHHHHH-HHHH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccC----------C-hHHHHH-HHHH--------HHHHHHHHH
Confidence 345677788888888888888888888877 33432100 0 000000 0000 124556666
Q ss_pred HHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHH
Q 002975 634 DLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYV 711 (861)
Q Consensus 634 ~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a 711 (861)
.+|.+.|++++|++.++++. .+.+...|..+..++...|+++.|+..++++++++|++..++..|+.++...|+++++
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777776652 2336778899999999999999999999999999999999999999999999999988
Q ss_pred HH-HHHHH
Q 002975 712 AN-IRKRM 718 (861)
Q Consensus 712 ~~-~~~~m 718 (861)
.+ .++.|
T Consensus 405 ~~~~~~~~ 412 (457)
T 1kt0_A 405 DRRIYANM 412 (457)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 65 34444
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.10 E-value=2.2e-05 Score=68.75 Aligned_cols=94 Identities=10% Similarity=0.038 Sum_probs=76.2
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-------CchHHH
Q 002975 627 EHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD-------PAAHIL 697 (861)
Q Consensus 627 ~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 697 (861)
..+..+...+...|++++|...+++.. .+.+..+|..+...+...|+++.|...+++++++.|++ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 345556666677777777777776652 33467788888888999999999999999999998876 778899
Q ss_pred HHHHHHHcCChhHHHHHHHHHHh
Q 002975 698 LSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 698 L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
++.+|...|++++|.+.++...+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999999998876
No 168
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.07 E-value=1.2e-05 Score=88.71 Aligned_cols=115 Identities=9% Similarity=0.090 Sum_probs=63.8
Q ss_pred HHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHH
Q 002975 532 SMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLIS 607 (861)
Q Consensus 532 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 607 (861)
..|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|++.|++.++ +.|+ ...+..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHH
Confidence 345566677777777766542 2455666666667777777777777777666 3443 445666666666667777
Q ss_pred HHHHHHHHHHhhcCCCCChhHHHHHHHH--hhhcCCHHHHHHHHH
Q 002975 608 EGWKHFRSMYDEHGIVQRMEHYACMVDL--LGRSGSLTEALEFIR 650 (861)
Q Consensus 608 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~--~~r~g~~~eA~~~~~ 650 (861)
+|.+.|++..+...-. ...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHD--KDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTC--TTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777666665332111 2223333333 555556666665555
No 169
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.06 E-value=1.3e-05 Score=71.72 Aligned_cols=63 Identities=11% Similarity=-0.009 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhcc-------CCCCCchH----HHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 658 VLVWRTFLGACRVHGDTELGKHAAEMILEQ-------DPQDPAAH----ILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 658 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
...|..+..++...|++++|+..+++++++ +|+++.+| ..++.++...|++++|.+.+++..+
T Consensus 57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 348888888888999999999999999988 99999999 9999999999999999999887754
No 170
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.05 E-value=4.1e-05 Score=73.28 Aligned_cols=62 Identities=13% Similarity=-0.019 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 659 LVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 659 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
.+|..+..++...|+++.|+..++++++++|+++.++..++.+|...|++++|.+.++...+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 68888899999999999999999999999999999999999999999999999999998765
No 171
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.03 E-value=1.2e-05 Score=72.06 Aligned_cols=112 Identities=11% Similarity=-0.031 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 002975 557 SWTSMITGFAKHGFAARALEIFYKMLADGIKPN-------------GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIV 623 (861)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 623 (861)
.+......+.+.|++++|+..|++.++ +.|+ ...|..+..++...|++++|+..++...+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~----- 85 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH----- 85 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----
Confidence 445566777888889999998888888 4554 12677777777888888888777766552
Q ss_pred CChhHHHHHHHHhhhcCCHHHHHHHHHh-CCCCCC-HHHH----HHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHH
Q 002975 624 QRMEHYACMVDLLGRSGSLTEALEFIRS-MPLSAD-VLVW----RTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHIL 697 (861)
Q Consensus 624 p~~~~~~~l~~~~~r~g~~~eA~~~~~~-~~~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 697 (861)
+|++ ....|+ ...| .....++...|++++|+..++++++++|+|.+.+--
T Consensus 86 ------------------------l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 86 ------------------------YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp ------------------------HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred ------------------------hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 1222 234665 5588 899999999999999999999999999999887654
Q ss_pred HH
Q 002975 698 LS 699 (861)
Q Consensus 698 L~ 699 (861)
+.
T Consensus 142 ~~ 143 (159)
T 2hr2_A 142 KE 143 (159)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.02 E-value=3.1e-05 Score=67.86 Aligned_cols=89 Identities=10% Similarity=0.040 Sum_probs=62.0
Q ss_pred HHHHhhhcCCHHHHHHHHHhCC-CCCC-H---HHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC---CchHHHHHHHHH
Q 002975 632 MVDLLGRSGSLTEALEFIRSMP-LSAD-V---LVWRTFLGACRVHGDTELGKHAAEMILEQDPQD---PAAHILLSNLYA 703 (861)
Q Consensus 632 l~~~~~r~g~~~eA~~~~~~~~-~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~L~~~y~ 703 (861)
+...+.+.|++++|.+.+++.. ..|+ . ..|..+..++...|+++.|+..++++++.+|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 3445556666666666665542 1222 2 466667777778888888888888888888887 666788888888
Q ss_pred HcCChhHHHHHHHHHHh
Q 002975 704 SAGHWEYVANIRKRMKE 720 (861)
Q Consensus 704 ~~g~~~~a~~~~~~m~~ 720 (861)
..|++++|.+.++.+.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 88888888888777655
No 173
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.02 E-value=4.6e-05 Score=79.82 Aligned_cols=129 Identities=9% Similarity=-0.041 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHH
Q 002975 571 AARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFI 649 (861)
Q Consensus 571 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~ 649 (861)
+++|+..|++..+ ..|+ ...+..+...+...|++++|...|++..+...-.++. ..+++.++-
T Consensus 129 ~~~A~~~~~~a~~--~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~--------------~~~~~~~~~ 192 (336)
T 1p5q_A 129 FEKAKESWEMNSE--EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF--------------SNEEAQKAQ 192 (336)
T ss_dssp EECCCCGGGCCHH--HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC--------------CSHHHHHHH
T ss_pred cccccchhcCCHH--HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC--------------ChHHHHHHH
Confidence 3444444444333 2343 4466667777777777777777777666322111110 001111110
Q ss_pred HhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 650 RSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 650 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
. -...+|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 193 -~----~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 193 -A----LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp -H----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -H----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0 01578889999999999999999999999999999999999999999999999999999998876
No 174
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.00 E-value=4.8e-06 Score=71.92 Aligned_cols=83 Identities=11% Similarity=0.098 Sum_probs=62.7
Q ss_pred hcCCHHHHHHHHHhCC-C---CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHH
Q 002975 638 RSGSLTEALEFIRSMP-L---SA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVA 712 (861)
Q Consensus 638 r~g~~~eA~~~~~~~~-~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~ 712 (861)
..|++++|+..|++.. . .| +..+|..+..++...|+++.|+..++++++++|+++.++..++.+|...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 3566677777776653 2 23 35577888888888899999999999999999999889999999999999999998
Q ss_pred HHHHHHHh
Q 002975 713 NIRKRMKE 720 (861)
Q Consensus 713 ~~~~~m~~ 720 (861)
+.++...+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887654
No 175
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.00 E-value=4.6e-05 Score=67.60 Aligned_cols=108 Identities=6% Similarity=-0.183 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 002975 591 ITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGAC 668 (861)
Q Consensus 591 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~ 668 (861)
..+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...+++.. .+.+...|..+..++
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 344444444444444444444444444211 1123344444455555555555555554432 233567788888888
Q ss_pred HHhCCHHHHHHHHHHHhccCCC-----CCchHHHHHH
Q 002975 669 RVHGDTELGKHAAEMILEQDPQ-----DPAAHILLSN 700 (861)
Q Consensus 669 ~~~g~~~~a~~~~~~~~~~~p~-----~~~~~~~L~~ 700 (861)
...|+++.|+..++++++++|+ +......+..
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~ 124 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 124 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHH
Confidence 8889999999999999988887 4444444444
No 176
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.99 E-value=4.8e-05 Score=83.08 Aligned_cols=162 Identities=6% Similarity=-0.100 Sum_probs=107.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhh---cCCCC-ChhH
Q 002975 558 WTSMITGFAKHGFAARALEIFYKMLAD-GIKPNG----ITYIAVLSACSHAGLISEGWKHFRSMYDE---HGIVQ-RMEH 628 (861)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p-~~~~ 628 (861)
+..|...|...|++++|.+++.++.+. +..++. .....+...+...|..+++..+++..... .+..+ ....
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 566777888888888888888777652 111121 12222333344567788888877766532 12222 2456
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhCC-------CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-------Cc
Q 002975 629 YACMVDLLGRSGSLTEALEFIRSMP-------LSAD-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD-------PA 693 (861)
Q Consensus 629 ~~~l~~~~~r~g~~~eA~~~~~~~~-------~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~ 693 (861)
+..+..+|...|++++|.+++++.. .++. ..++..++..|...|+++.|...+++++...+.. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 6778888888888888888887652 1222 4477778888899999999999998888754322 23
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHH
Q 002975 694 AHILLSNLYASAGHWEYVANIRKRMK 719 (861)
Q Consensus 694 ~~~~L~~~y~~~g~~~~a~~~~~~m~ 719 (861)
.+..++.+|...|+|++|.+.+...-
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45677888888899999988766553
No 177
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.99 E-value=3.9e-05 Score=67.24 Aligned_cols=56 Identities=11% Similarity=0.101 Sum_probs=26.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002975 528 NALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLA 583 (861)
Q Consensus 528 ~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 583 (861)
..|...|.+.|++++|++.|++..+ .+...|+.+..+|...|++++|++.|++.++
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444445555555555555544331 2334444455555555555555555555444
No 178
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.98 E-value=0.0012 Score=67.70 Aligned_cols=211 Identities=12% Similarity=0.074 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCC----------HHHHHHHHHhccC---CCchHHHHHHHHHHhcC--C
Q 002975 506 GKGEQIHARIIKSGFESNHCIYNALISMYSRCAN----------VEAAFQVFKEMED---RNVISWTSMITGFAKHG--F 570 (861)
Q Consensus 506 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g--~ 570 (861)
++|.++.+.++..+ +.+..+|+.--..+...+. +++++.+++.+.. ++..+|+.-...+...| .
T Consensus 47 ~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 47 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 47888888888765 3445556554333433333 6788888888773 56788888877888888 4
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhc----------
Q 002975 571 AARALEIFYKMLADGIKPNGITYIAVLSACSHAGL-ISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRS---------- 639 (861)
Q Consensus 571 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~---------- 639 (861)
+++++.+++++.+.. +-|...|..-...+.+.|. +++++++++.+.+.. +-+...|+....++.+.
T Consensus 126 ~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 126 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHHSCCC------
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhhhcccccccc
Confidence 899999999999953 2356677777777778888 699999999998543 23445555555554443
Q ss_pred ----CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 002975 640 ----GSLTEALEFIRSMP--LSADVLVWRTFLGACRVH-----------GDTELGKHAAEMILEQDPQDPAAHILLSNLY 702 (861)
Q Consensus 640 ----g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y 702 (861)
+.+++++++++++- .+-|...|+-+-+.+... +.++.++..++++++++|++.=++..++.+.
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~ 282 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM 282 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHH
Confidence 56899999998873 455788998777766555 4588999999999999999844433333222
Q ss_pred ---HHcCChhHHHHHHHHHHh
Q 002975 703 ---ASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 703 ---~~~g~~~~a~~~~~~m~~ 720 (861)
...|..+++...+.++.+
T Consensus 283 ~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 283 RALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHCTTTTHHHHHHHHHHHHH
T ss_pred HhhcccccHHHHHHHHHHHHH
Confidence 235667777777777765
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.96 E-value=4.9e-05 Score=80.60 Aligned_cols=87 Identities=7% Similarity=-0.072 Sum_probs=69.3
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 002975 627 EHYACMVDLLGRSGSLTEALEFIRSM-PLSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS 704 (861)
Q Consensus 627 ~~~~~l~~~~~r~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~ 704 (861)
..|..+..+|.+.|++++|++.++++ ...| +...|..+..++...|++++|+..++++++++|++...+..|+.++..
T Consensus 274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~ 353 (370)
T 1ihg_A 274 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK 353 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34555566666666666666666654 2333 577888899999999999999999999999999999999999999999
Q ss_pred cCChhHHHH
Q 002975 705 AGHWEYVAN 713 (861)
Q Consensus 705 ~g~~~~a~~ 713 (861)
.++.+++.+
T Consensus 354 ~~~~~~a~k 362 (370)
T 1ihg_A 354 IKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988888765
No 180
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.92 E-value=3.7e-05 Score=70.78 Aligned_cols=123 Identities=12% Similarity=0.041 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHH
Q 002975 557 SWTSMITGFAKHGFAARALEIFYKMLADG------IKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYA 630 (861)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 630 (861)
.|......+.+.|++++|+..|++.++.- -.|+...+ ..+. +.....|.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~~-----~~~~~~~~ 67 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VELD-----RKNIPLYA 67 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHHH-----HTHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHHH-----HHHHHHHH
Confidence 45566677777777777777777776620 01111100 0000 01123445
Q ss_pred HHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC-chHHHHHHHHHH
Q 002975 631 CMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDP-AAHILLSNLYAS 704 (861)
Q Consensus 631 ~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~L~~~y~~ 704 (861)
.+..+|.+.|++++|+..+++.. .+.++..|..+..++...|+++.|+..++++++++|+++ .....|..+...
T Consensus 68 nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 68 NMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 55555666666666666655542 233577888899999999999999999999999999987 555555554433
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.90 E-value=6.6e-05 Score=68.51 Aligned_cols=136 Identities=13% Similarity=0.049 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHH
Q 002975 556 ISWTSMITGFAKHGFAARALEIFYKMLADGIK-PN----GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYA 630 (861)
Q Consensus 556 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 630 (861)
.++..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|..+++...+...-.++
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~----- 84 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD----- 84 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-----
Confidence 35566667777777777777777776653111 11 124555566666666666666666555421100000
Q ss_pred HHHHHhhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC------CCchHHHHHHHHH
Q 002975 631 CMVDLLGRSGSLTEALEFIRSMPLSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ------DPAAHILLSNLYA 703 (861)
Q Consensus 631 ~l~~~~~r~g~~~eA~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~L~~~y~ 703 (861)
.+ ...++..+...+...|+++.|+..+++++++.+. ....+..++.+|.
T Consensus 85 ------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 85 ------------------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ------------------------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Confidence 00 1335555666677777777777777777665321 2345778888888
Q ss_pred HcCChhHHHHHHHHHHh
Q 002975 704 SAGHWEYVANIRKRMKE 720 (861)
Q Consensus 704 ~~g~~~~a~~~~~~m~~ 720 (861)
..|++++|.+.+++..+
T Consensus 141 ~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 141 ALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 89999988888776543
No 182
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.90 E-value=4.4e-05 Score=66.22 Aligned_cols=94 Identities=12% Similarity=0.035 Sum_probs=50.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhC
Q 002975 596 VLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHG 672 (861)
Q Consensus 596 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g 672 (861)
+...+...|++++|...|+...+. .| +...+..+..++.+.|++++|+..+++.. ..| +...|..|..++...|
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 333444444444444444444421 22 23334444444455555555555554432 233 5667888888888888
Q ss_pred CHHHHHHHHHHHhccCCCCC
Q 002975 673 DTELGKHAAEMILEQDPQDP 692 (861)
Q Consensus 673 ~~~~a~~~~~~~~~~~p~~~ 692 (861)
+.+.|+..++++++++|+++
T Consensus 100 ~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHhCcCCC
Confidence 89999999999999888764
No 183
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.88 E-value=0.00014 Score=63.57 Aligned_cols=116 Identities=9% Similarity=-0.079 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 002975 556 ISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDL 635 (861)
Q Consensus 556 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 635 (861)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|..+++.+.+.. |+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~---------- 70 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE---------- 70 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc----------
Confidence 355666666777777777777777776632 2234455666666666666666666666655221 00
Q ss_pred hhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 002975 636 LGRSGSLTEALEFIRSMPLSAD----VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS 704 (861)
Q Consensus 636 ~~r~g~~~eA~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~ 704 (861)
..++ ..+|..+..++...|+++.|...+++++++.| ++.....++.++..
T Consensus 71 ------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 71 ------------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp ------------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ------------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 0112 45667777778888888888888888888887 56666666555443
No 184
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.87 E-value=5.4e-05 Score=82.79 Aligned_cols=70 Identities=13% Similarity=0.068 Sum_probs=55.2
Q ss_pred CCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhc-----cCCCCCch---HHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 002975 655 SAD-VLVWRTFLGACRVHGDTELGKHAAEMILE-----QDPQDPAA---HILLSNLYASAGHWEYVANIRKRMKERNLI 724 (861)
Q Consensus 655 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~ 724 (861)
.|+ ..+++.|...|...|++++|+..++++++ +.|+++.+ ...|..++.++|++++|..++..+++.-.+
T Consensus 389 Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 389 NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN 467 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344 34677888888888999999988888886 46776654 457888899999999999999999885443
No 185
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.86 E-value=0.00012 Score=63.96 Aligned_cols=44 Identities=14% Similarity=0.026 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 002975 658 VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNL 701 (861)
Q Consensus 658 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 701 (861)
..++..+..++...|+.+.|+..++++++..|+++........+
T Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 76 AGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 45666777788888999999999999999999876665544443
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.86 E-value=0.00027 Score=77.00 Aligned_cols=161 Identities=9% Similarity=0.009 Sum_probs=99.4
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHHh--CCCC---chhHHHHHHHHHHccCCHHHHHHHHHhccC-----CC----chH
Q 002975 492 FASLLSGASSIGAIGKGEQIHARIIKS--GFES---NHCIYNALISMYSRCANVEAAFQVFKEMED-----RN----VIS 557 (861)
Q Consensus 492 ~~~ll~a~~~~~~~~~a~~~~~~~~~~--~~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~ 557 (861)
+..+...|...|+++++.+.+..+.+. .+.. ...+.+.+...+...|+.+.|..+++.... .+ ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 334444555555555555554444321 1110 012233344445556777777777765541 11 236
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc--CC--CCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC---C--hh
Q 002975 558 WTSMITGFAKHGFAARALEIFYKMLAD--GI--KPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ---R--ME 627 (861)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~--~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p---~--~~ 627 (861)
+..+...|...|++++|+.++++.... +. +|. ..++..++..|...|++++|..+++.......-.+ . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 677888888889999999888887653 11 222 34677888889999999999999887764321111 1 24
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC
Q 002975 628 HYACMVDLLGRSGSLTEALEFIRSM 652 (861)
Q Consensus 628 ~~~~l~~~~~r~g~~~eA~~~~~~~ 652 (861)
.+..+...+...|++++|...+.+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5677788888999999988877654
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.86 E-value=0.0005 Score=77.11 Aligned_cols=167 Identities=11% Similarity=0.034 Sum_probs=131.7
Q ss_pred CHHHHHHHHHhccC---CCchHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcC
Q 002975 539 NVEAAFQVFKEMED---RNVISWTSMITGFAKHGF----------AARALEIFYKMLADGIKPN-GITYIAVLSACSHAG 604 (861)
Q Consensus 539 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g 604 (861)
.-++|.+.++.+.. .+...|+.--..+...|+ ++++++.++++.+ ..|. ..+|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcc
Confidence 34677888887763 344677776666666666 8999999999998 4554 568888888888888
Q ss_pred --CHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcC-CHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHh-------
Q 002975 605 --LISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSG-SLTEALEFIRSMP-L-SADVLVWRTFLGACRVH------- 671 (861)
Q Consensus 605 --~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g-~~~eA~~~~~~~~-~-~p~~~~~~~ll~~~~~~------- 671 (861)
++++++..++.+.+. .| +...|+.-.-++.+.| ..++++++++++- . .-|...|+....++...
T Consensus 122 ~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 779999999999843 34 4556776667777788 8999999998874 3 34788999888887663
Q ss_pred -------CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhH
Q 002975 672 -------GDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEY 710 (861)
Q Consensus 672 -------g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~ 710 (861)
+.++++...++++++++|+|..+|..+..++...|+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999998665
No 188
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.84 E-value=6.6e-05 Score=68.50 Aligned_cols=136 Identities=12% Similarity=0.020 Sum_probs=94.6
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHhccC-----CCc----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----
Q 002975 524 HCIYNALISMYSRCANVEAAFQVFKEMED-----RNV----ISWTSMITGFAKHGFAARALEIFYKMLADGIK-PN---- 589 (861)
Q Consensus 524 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~---- 589 (861)
..++..+...|...|++++|...|++..+ .+. .++..+...|...|++++|+..+++..+.... ++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45778889999999999999999998763 221 47888899999999999999999998763111 11
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 002975 590 GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSA-DVLVWRTFLGAC 668 (861)
Q Consensus 590 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p-~~~~~~~ll~~~ 668 (861)
...+..+...+...|++++|..+++...+.. +.....+ ...++..+...+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----------------------------~~~~~~~~~~~~~~~la~~~ 139 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA-----------------------------QELKDRIGEGRACWSLGNAY 139 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------------------------HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-----------------------------HHccchHhHHHHHHHHHHHH
Confidence 3456777778888888888888887765221 1110000 123455566666
Q ss_pred HHhCCHHHHHHHHHHHhccC
Q 002975 669 RVHGDTELGKHAAEMILEQD 688 (861)
Q Consensus 669 ~~~g~~~~a~~~~~~~~~~~ 688 (861)
...|+.+.|...+++++++.
T Consensus 140 ~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 140 TALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHTCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHH
Confidence 77777777777777766543
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.84 E-value=2e-05 Score=82.59 Aligned_cols=146 Identities=10% Similarity=-0.030 Sum_probs=85.9
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 002975 555 VISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVD 634 (861)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 634 (861)
...|..+...+.+.|++++|+..|++.++ ..|+... +...|..+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 45677888888899999999999999988 5566442 223444454443221 135777888
Q ss_pred HhhhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH-HcCChhHH
Q 002975 635 LLGRSGSLTEALEFIRSMP-LS-ADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYA-SAGHWEYV 711 (861)
Q Consensus 635 ~~~r~g~~~eA~~~~~~~~-~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~-~~g~~~~a 711 (861)
+|.+.|++++|++.+++.. .. .+...|..+..++...|+++.|+..++++++++|++..++..|+.+.. ..+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999988763 33 367789999999999999999999999999999999999999988844 45667777
Q ss_pred HHHHHHHHh
Q 002975 712 ANIRKRMKE 720 (861)
Q Consensus 712 ~~~~~~m~~ 720 (861)
.+.++.|-+
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 777776654
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.82 E-value=8.9e-05 Score=78.61 Aligned_cols=112 Identities=9% Similarity=-0.009 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 002975 590 GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSA-DVLVWRTFLGAC 668 (861)
Q Consensus 590 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p-~~~~~~~ll~~~ 668 (861)
...+..+...+...|++++|...|++..+.. +.. ...-..+++.+ ..| +..+|..+..++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~~------~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGAK------LQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHGG------GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHHH------HHHHHHHHHHHHHHHH
Confidence 4467778888888899999998888776321 000 00011111111 122 456888999999
Q ss_pred HHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 669 RVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 669 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
...|+++.|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998866
No 191
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.81 E-value=0.00016 Score=61.07 Aligned_cols=91 Identities=10% Similarity=-0.015 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hHHHHHHHH
Q 002975 525 CIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN---GITYIAVLS 598 (861)
Q Consensus 525 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~ 598 (861)
..+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+. .|+ ...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHHHHH
Confidence 3444455555555555555555554431 23344555555555555555555555555552 232 334455555
Q ss_pred HHHhc-CCHHHHHHHHHHHH
Q 002975 599 ACSHA-GLISEGWKHFRSMY 617 (861)
Q Consensus 599 a~~~~-g~~~~a~~~~~~m~ 617 (861)
++... |++++|.++++...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHhCCHHHHHHHHHHHh
Confidence 55555 55555555555554
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.81 E-value=3.6e-05 Score=65.30 Aligned_cols=89 Identities=11% Similarity=-0.007 Sum_probs=72.3
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC------CchHHH
Q 002975 626 MEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD------PAAHIL 697 (861)
Q Consensus 626 ~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~ 697 (861)
...+..+...+.+.|++++|++.+++.. .+.+..+|..+..++...|+++.|+..++++++++|++ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 4456667777778888888888777752 33467889999999999999999999999999999998 778888
Q ss_pred HHHHHHHcCChhHHHHH
Q 002975 698 LSNLYASAGHWEYVANI 714 (861)
Q Consensus 698 L~~~y~~~g~~~~a~~~ 714 (861)
++.++...|++++|.+.
T Consensus 84 ~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHhHhhhHhH
Confidence 89999888888776543
No 193
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.81 E-value=2.4e-05 Score=67.38 Aligned_cols=77 Identities=10% Similarity=0.044 Sum_probs=50.2
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 002975 628 HYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS 704 (861)
Q Consensus 628 ~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~ 704 (861)
.+..+..+|.+.|++++|++.+++.. .+.+..+|..+..++...|+.+.|+..++++++..|+++........+..-
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34444445555555555555555442 233466778888888889999999999999999999887665444333333
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.80 E-value=8.2e-05 Score=61.85 Aligned_cols=65 Identities=15% Similarity=0.122 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 656 ADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 656 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
.++..|..+..++...|+++.|+..++++++++|+++.+|..|+.+|...|++++|.+.+++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 36788999999999999999999999999999999999999999999999999999999987754
No 195
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.77 E-value=0.00013 Score=79.96 Aligned_cols=131 Identities=8% Similarity=-0.072 Sum_probs=93.9
Q ss_pred ChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHH
Q 002975 570 FAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEF 648 (861)
Q Consensus 570 ~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~ 648 (861)
++++|+..|+...+ ..|+ ...+..+...+.+.|++++|...|++..+...-.+... -++..+
T Consensus 249 ~~~~A~~~~~~~~~--~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~--------------~~~~~~- 311 (457)
T 1kt0_A 249 SFEKAKESWEMDTK--EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS--------------EKESKA- 311 (457)
T ss_dssp EEECCCCGGGSCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC--------------HHHHHH-
T ss_pred hcccCcchhhcCHH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC--------------hHHHHH-
Confidence 34455555544433 2343 44677777888888888888888887774322222100 011111
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 649 IRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 649 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
++. -...+|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 312 ~~~----~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 312 SES----FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHH----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 000 024688889999999999999999999999999999999999999999999999999999988763
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.77 E-value=4.1e-05 Score=80.26 Aligned_cols=151 Identities=10% Similarity=-0.037 Sum_probs=77.4
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 002975 524 HCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHA 603 (861)
Q Consensus 524 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 603 (861)
...+..+...|.+.|++++|...|++....+.... .+...|+..++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45677888999999999999999998764222111 1223333444433221 13677778888888
Q ss_pred CCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHH-HHHhCCHHHHHH
Q 002975 604 GLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGA-CRVHGDTELGKH 679 (861)
Q Consensus 604 g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~-~~~~g~~~~a~~ 679 (861)
|++++|+..|+...+. .| +...|..+..+|...|++++|++.|+++. ..| +..++..|... ....+..+.+..
T Consensus 244 g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888887733 34 45677778888888888888888888873 444 34456656555 344567788888
Q ss_pred HHHHHhccCCCCC
Q 002975 680 AAEMILEQDPQDP 692 (861)
Q Consensus 680 ~~~~~~~~~p~~~ 692 (861)
.++++++..|+++
T Consensus 321 ~~~~~l~~~p~~~ 333 (338)
T 2if4_A 321 MYKGIFKGKDEGG 333 (338)
T ss_dssp -------------
T ss_pred HHHHhhCCCCCCC
Confidence 9999999999765
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.74 E-value=0.00011 Score=59.55 Aligned_cols=80 Identities=21% Similarity=0.272 Sum_probs=62.5
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 002975 627 EHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS 704 (861)
Q Consensus 627 ~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~ 704 (861)
..+..+...+.+.|++++|++.+++.. .+.+..+|..+..++...|+.+.|+..++++++++|+++..+..++.+|..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 345555666666777777777666642 233567888889999999999999999999999999999999999998877
Q ss_pred cC
Q 002975 705 AG 706 (861)
Q Consensus 705 ~g 706 (861)
.|
T Consensus 90 ~g 91 (91)
T 1na3_A 90 QG 91 (91)
T ss_dssp HC
T ss_pred cC
Confidence 54
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.62 E-value=4e-05 Score=68.50 Aligned_cols=84 Identities=13% Similarity=0.061 Sum_probs=66.6
Q ss_pred hcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHhccCCCCCchHHHHHHHHHHc
Q 002975 638 RSGSLTEALEFIRSMP-L-SADVLVWRTFLGACRVHGD----------TELGKHAAEMILEQDPQDPAAHILLSNLYASA 705 (861)
Q Consensus 638 r~g~~~eA~~~~~~~~-~-~p~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~ 705 (861)
|.+.+++|++.+++.. . +.++..|..+..++...++ +++|+..++++++++|+++.+|..|+++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 4556677777666652 2 3356677777777666654 56999999999999999999999999999988
Q ss_pred C-----------ChhHHHHHHHHHHhC
Q 002975 706 G-----------HWEYVANIRKRMKER 721 (861)
Q Consensus 706 g-----------~~~~a~~~~~~m~~~ 721 (861)
| ++++|.+.+++..+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh
Confidence 5 899999999988763
No 199
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.60 E-value=0.00026 Score=57.51 Aligned_cols=69 Identities=13% Similarity=-0.013 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 002975 655 SADVLVWRTFLGACRVHGD---TELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNL 723 (861)
Q Consensus 655 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~ 723 (861)
++|+..|..+..++...++ .+.|...++++++++|+++.+...|++++...|++++|...++.+.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4578888889888866655 79999999999999999999999999999999999999999999987544
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.58 E-value=0.00017 Score=61.59 Aligned_cols=76 Identities=14% Similarity=0.082 Sum_probs=64.5
Q ss_pred HHHHHHhC-CCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 645 ALEFIRSM-PLS-ADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 645 A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
|++.+++. ... .+...|..+...+...|+++.|+..++++++++|+++..+..++.+|...|++++|.+.++...+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455443 233 36778999999999999999999999999999999999999999999999999999999987765
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.50 E-value=0.00027 Score=77.33 Aligned_cols=114 Identities=16% Similarity=0.082 Sum_probs=80.8
Q ss_pred hhhcCCHHHHHHHHHhCC---------CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhc-----cCCCCC---chHHH
Q 002975 636 LGRSGSLTEALEFIRSMP---------LSAD-VLVWRTFLGACRVHGDTELGKHAAEMILE-----QDPQDP---AAHIL 697 (861)
Q Consensus 636 ~~r~g~~~eA~~~~~~~~---------~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~ 697 (861)
+..+|++++|+.++++.. ..|+ ..+++.|..+|...|++++|+..++++++ +.|+++ ..+..
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 335566666666555431 2333 34778888889999999999999988886 345554 56778
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 002975 698 LSNLYASAGHWEYVANIRKRMKERNLIKEAGCSWIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKE 767 (861)
Q Consensus 698 L~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~ 767 (861)
|+.+|..+|++++|..++++..+.-.+ .=...||.+.++...+.+...+++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998877541110 0013699999999888887766654
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.0011 Score=55.87 Aligned_cols=65 Identities=9% Similarity=0.043 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 657 DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 657 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
+...|..+...+...|+++.|+..++++++++|+++..+..++.+|...|++++|.+.++...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45678889999999999999999999999999999999999999999999999999999988763
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.38 E-value=0.00045 Score=74.39 Aligned_cols=90 Identities=13% Similarity=0.088 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhcc-----CCCCC---chHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCcee
Q 002975 659 LVWRTFLGACRVHGDTELGKHAAEMILEQ-----DPQDP---AAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCS 730 (861)
Q Consensus 659 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s 730 (861)
.+++.|+.+|...|++++|+..+++++++ .|+++ ..+..|+.+|..+|++++|..++++..+.-. +
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~----- 403 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR-V----- 403 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-H-----
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-H-----
Confidence 46777888888888888888888888752 44444 5677899999999999999998887654100 0
Q ss_pred EEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 002975 731 WIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIK 766 (861)
Q Consensus 731 ~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~ 766 (861)
.-...||...+++..|.+...+|+
T Consensus 404 ------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 404 ------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp ------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred ------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 011369999999999998887775
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.33 E-value=0.0013 Score=52.92 Aligned_cols=64 Identities=22% Similarity=0.300 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 657 DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 657 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+...|..+...+...|+++.|+..++++++++|+++..+..++.+|...|++++|.+.+++..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3567888889999999999999999999999999999999999999999999999999988765
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.31 E-value=0.0023 Score=56.68 Aligned_cols=111 Identities=6% Similarity=-0.084 Sum_probs=58.7
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHH
Q 002975 569 GFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEF 648 (861)
Q Consensus 569 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~ 648 (861)
+++++|+.+|++..+.| .|+.. +...|...+.+++|.++|++..+
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~------------------------------ 53 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE------------------------------ 53 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH------------------------------
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc------------------------------
Confidence 34566666666666655 22222 44444455555555555555542
Q ss_pred HHhCCCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH----cCChhHHHHHHHHHHh
Q 002975 649 IRSMPLSADVLVWRTFLGACRV----HGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS----AGHWEYVANIRKRMKE 720 (861)
Q Consensus 649 ~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~----~g~~~~a~~~~~~m~~ 720 (861)
.-++..+..|...|.. .+|.++|...++++.+. .++.++..|+.+|.. .+++++|.+.+++.-+
T Consensus 54 ------~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 54 ------LNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp ------TTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 2234444444444444 44555555555555554 345556666666666 5666666666665555
Q ss_pred CC
Q 002975 721 RN 722 (861)
Q Consensus 721 ~~ 722 (861)
.|
T Consensus 126 ~g 127 (138)
T 1klx_A 126 LG 127 (138)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.22 E-value=0.0011 Score=58.63 Aligned_cols=106 Identities=5% Similarity=-0.050 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHhccC-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCHHHHHHH
Q 002975 538 ANVEAAFQVFKEMED-RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSH----AGLISEGWKH 612 (861)
Q Consensus 538 g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~ 612 (861)
+++++|.+.|++..+ .+.... |...|...+..++|+++|++..+.| +...+..|...|.. .+++++|..+
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 468899999998764 344555 7777777788999999999999975 55677777777777 6788888888
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHhhh----cCCHHHHHHHHHhC
Q 002975 613 FRSMYDEHGIVQRMEHYACMVDLLGR----SGSLTEALEFIRSM 652 (861)
Q Consensus 613 ~~~m~~~~~~~p~~~~~~~l~~~~~r----~g~~~eA~~~~~~~ 652 (861)
|++..+. -+...+..|..+|.. .+++++|.+++++.
T Consensus 84 ~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 84 YSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp HHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 8877632 234444455555555 55555555555544
No 207
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.17 E-value=0.00052 Score=73.71 Aligned_cols=62 Identities=15% Similarity=0.102 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhc-----cCCCC---CchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 659 LVWRTFLGACRVHGDTELGKHAAEMILE-----QDPQD---PAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 659 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~---~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
.+++.|..+|...|++++|+..++++++ +.|++ ...|..|+.+|..+|++++|..++++..+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4677777788888888888888888775 34444 45677888899999999999998887654
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.13 E-value=0.0094 Score=61.20 Aligned_cols=46 Identities=15% Similarity=0.075 Sum_probs=28.4
Q ss_pred CCchHHHHHHHHHH--hcC---ChHHHHHHHHHHHHcCCCCCh-HHHHHHHHHH
Q 002975 553 RNVISWTSMITGFA--KHG---FAARALEIFYKMLADGIKPNG-ITYIAVLSAC 600 (861)
Q Consensus 553 ~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~ 600 (861)
.|...|...+.+.. ..+ ...+|+.+|++.++ ..|+- ..+..+..++
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~ 243 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVD 243 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 46667766665543 333 34788999999998 67873 4454444444
No 209
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.10 E-value=0.0068 Score=67.90 Aligned_cols=149 Identities=9% Similarity=0.024 Sum_probs=119.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhcCCCCChhHHHHHHHHh
Q 002975 568 HGFAARALEIFYKMLADGIKPNG-ITYIAVLSACSHAGL----------ISEGWKHFRSMYDEHGIVQRMEHYACMVDLL 636 (861)
Q Consensus 568 ~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 636 (861)
....++|++.++++++ ..|+. ..|+.-..++.+.|. +++++..++.+.+.. +-+...|..-.-++
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 3445789999999999 67874 456666666667777 999999999998433 22445666666777
Q ss_pred hhcC--CHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc------
Q 002975 637 GRSG--SLTEALEFIRSMP--LSADVLVWRTFLGACRVHG-DTELGKHAAEMILEQDPQDPAAHILLSNLYASA------ 705 (861)
Q Consensus 637 ~r~g--~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~------ 705 (861)
.+.| ++++|+++++++- .+.+..+|+.-..+....| ..+.+...++++++.+|+|..+|...+.++...
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8888 7799999999984 4457889999999999999 899999999999999999999999999998884
Q ss_pred --------CChhHHHHHHHHHHh
Q 002975 706 --------GHWEYVANIRKRMKE 720 (861)
Q Consensus 706 --------g~~~~a~~~~~~m~~ 720 (861)
++++++.+..+..-.
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHh
Confidence 556788777765543
No 210
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.92 E-value=0.0032 Score=51.98 Aligned_cols=62 Identities=16% Similarity=0.217 Sum_probs=40.1
Q ss_pred CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002975 554 NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMY 617 (861)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 617 (861)
+...|..+...|...|++++|+..|++.++ ..|+ ...|..+..++...|++++|...|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345566666666677777777777777666 3343 4456666666777777777777666655
No 211
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.91 E-value=0.0021 Score=57.41 Aligned_cols=94 Identities=13% Similarity=0.057 Sum_probs=57.2
Q ss_pred ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCC----------HHHHHHHHHhccC--C-CchHHHHHHHHHHhc
Q 002975 502 IGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCAN----------VEAAFQVFKEMED--R-NVISWTSMITGFAKH 568 (861)
Q Consensus 502 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~----------~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~ 568 (861)
.+.+++|.+.+...++.. +.+...++.+..++...++ +++|+..|++..+ | +..+|..+..+|...
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 344555555555555554 4455566655556655554 3466666666552 3 345667777777655
Q ss_pred -----------CChHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 002975 569 -----------GFAARALEIFYKMLADGIKPNGITYIAVLS 598 (861)
Q Consensus 569 -----------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 598 (861)
|++++|++.|++.++ +.|+...|...+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~ 132 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLE 132 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 367788888888777 6677666654444
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.88 E-value=0.0032 Score=51.63 Aligned_cols=63 Identities=19% Similarity=0.241 Sum_probs=33.2
Q ss_pred HHHhhhcCCHHHHHHHHHhCC-CCC-CHH-HHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchH
Q 002975 633 VDLLGRSGSLTEALEFIRSMP-LSA-DVL-VWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAH 695 (861)
Q Consensus 633 ~~~~~r~g~~~eA~~~~~~~~-~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 695 (861)
...+.+.|++++|++.++++. ..| +.. .|..+..++...|+++.|+..++++++++|+++.++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 344555555555555555542 222 344 555555555555555555555555555555555544
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.86 E-value=0.0045 Score=50.72 Aligned_cols=86 Identities=12% Similarity=0.043 Sum_probs=52.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCC-Chh-HHHHHHHHhhhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHh
Q 002975 596 VLSACSHAGLISEGWKHFRSMYDEHGIVQ-RME-HYACMVDLLGRSGSLTEALEFIRSMP-LSAD-VLVWRTFLGACRVH 671 (861)
Q Consensus 596 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~-~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~-~~~~~~ll~~~~~~ 671 (861)
....+...|++++|...|+...+. .| +.. .+..+..+|.+.|++++|++.+++.. ..|+ ...|. .
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--------~ 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA--------R 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH--------H
Confidence 445666777777777777777633 23 345 66667777777777777777777652 2332 22221 1
Q ss_pred CCHHHHHHHHHHHhccCCCCC
Q 002975 672 GDTELGKHAAEMILEQDPQDP 692 (861)
Q Consensus 672 g~~~~a~~~~~~~~~~~p~~~ 692 (861)
+.+..+...++++.+.+|+++
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHHhccCcccc
Confidence 445666666666666666554
No 214
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.74 E-value=0.0067 Score=51.41 Aligned_cols=61 Identities=13% Similarity=0.092 Sum_probs=32.8
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002975 555 VISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMY 617 (861)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 617 (861)
...|..+...|...|++++|+..|++.++. .|+ ...+..+..++...|++++|...|+...
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555555555555555555555555552 332 3345555555555555555555555544
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.68 E-value=0.0056 Score=65.68 Aligned_cols=100 Identities=10% Similarity=0.034 Sum_probs=61.6
Q ss_pred hcCChHHHHHHHHHHHHc---CCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhc
Q 002975 567 KHGFAARALEIFYKMLAD---GIKPNG----ITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRS 639 (861)
Q Consensus 567 ~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~ 639 (861)
..|++++|+.++++.++. -+.|+. .+++.+..+|...|++++|..++++..+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~--------------------- 368 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK--------------------- 368 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH---------------------
Confidence 456777777777776552 233442 3566666677777777777766665542
Q ss_pred CCHHHHHHHHHhC--CCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhc-----cCCCCCchH
Q 002975 640 GSLTEALEFIRSM--PLSAD-VLVWRTFLGACRVHGDTELGKHAAEMILE-----QDPQDPAAH 695 (861)
Q Consensus 640 g~~~eA~~~~~~~--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 695 (861)
++++. +..|+ ..+++.|...|...|++++|+..++++++ +.|+++.+-
T Consensus 369 --------i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 369 --------PYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp --------HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred --------HHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 11111 13344 34677777888888888888888888776 466665443
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.62 E-value=0.0062 Score=53.66 Aligned_cols=91 Identities=11% Similarity=0.026 Sum_probs=64.9
Q ss_pred CCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHhccC-C-CCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCce
Q 002975 655 SADVLVWRTFLGACRVHG---DTELGKHAAEMILEQD-P-QDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGC 729 (861)
Q Consensus 655 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~ 729 (861)
.++..+...+.+++.+.+ +.++|+..++.+++.+ | ++...++.|+-.|++.|++++|.+..+.+.+
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~--------- 99 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ--------- 99 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH---------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh---------
Confidence 456677777777777766 5668888888888877 6 4567778888888888888888888887765
Q ss_pred eEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCcc
Q 002975 730 SWIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKEFGYL 771 (861)
Q Consensus 730 s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~ 771 (861)
..|...+...-.+.+.+++++.|.+
T Consensus 100 -----------------ieP~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 100 -----------------TEPQNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp -----------------HCTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred -----------------cCCCCHHHHHHHHHHHHHHHHhhHH
Confidence 2354555555555566677777754
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.53 E-value=0.012 Score=63.23 Aligned_cols=109 Identities=10% Similarity=0.041 Sum_probs=67.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc---CCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHH
Q 002975 561 MITGFAKHGFAARALEIFYKMLAD---GIKPNG----ITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMV 633 (861)
Q Consensus 561 li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 633 (861)
.+..+.+.|++++|+.++++.++. -+.|+. .+++.+..+|...|++++|..+++++.+-
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i-------------- 358 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEP-------------- 358 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------------
Confidence 344555667777777777777653 133442 35666666777777777777766655421
Q ss_pred HHhhhcCCHHHHHHHHHhC--CCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhc-----cCCCCCchHHHH
Q 002975 634 DLLGRSGSLTEALEFIRSM--PLSAD-VLVWRTFLGACRVHGDTELGKHAAEMILE-----QDPQDPAAHILL 698 (861)
Q Consensus 634 ~~~~r~g~~~eA~~~~~~~--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~~L 698 (861)
+++. +..|+ ..+++.|...|...|++++|+..++++++ +.|+++.+-..+
T Consensus 359 ---------------~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 416 (429)
T 3qwp_A 359 ---------------YRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI 416 (429)
T ss_dssp ---------------HHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred ---------------HHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 1111 13333 34667777888888888888888888776 467776555443
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.30 E-value=0.045 Score=56.21 Aligned_cols=132 Identities=13% Similarity=0.105 Sum_probs=90.1
Q ss_pred CCCChHHHHHHHHHHH--hcC---CHHHHHHHHHHHHhhcCCCCCh-hHHHHHHHHh----hhcC-------CHHHHHHH
Q 002975 586 IKPNGITYIAVLSACS--HAG---LISEGWKHFRSMYDEHGIVQRM-EHYACMVDLL----GRSG-------SLTEALEF 648 (861)
Q Consensus 586 ~~p~~~t~~~ll~a~~--~~g---~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~----~r~g-------~~~eA~~~ 648 (861)
.+.|...|..++.+.. ..+ ...+|+.+|++.. .+.|+- ..|..+.-+| ...+ .+.+|.+-
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al---~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIV---QSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3445667776666543 333 3578999999988 446753 2333222211 1111 12223332
Q ss_pred HHhCC-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 649 IRSMP-LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 649 ~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
...+. .+.++.+|.++.-.+...|+.+.|...++++++++| +...|..++.++.-.|++++|.+.+++....
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 23333 345788888888888888999999999999999997 4678899999999999999999999877653
No 219
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.29 E-value=0.34 Score=40.83 Aligned_cols=140 Identities=8% Similarity=0.031 Sum_probs=93.4
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHH
Q 002975 566 AKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEA 645 (861)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA 645 (861)
.-.|..++..++..+..... +..-++-++--....-+-+-..+.++.+-+-+.+ ..+|++...
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 34577777777777776632 2222222332222333334444444444332222 346677777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 002975 646 LEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLI 724 (861)
Q Consensus 646 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~ 724 (861)
...+-.+. -+....+-.+......|..+.-..+...++.-+|-++...+.++++|.+.|.-.+|.+++++.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 66666652 233445566778889999999999999988888888999999999999999999999999999999985
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.29 E-value=0.099 Score=61.81 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=20.2
Q ss_pred HcCCHHHHHH-HHHhcCCCCeehHHHHHHHHHhcCChhHHHHHH
Q 002975 435 RSGRMEDARK-AFESLFEKNLVSYNTMVDAYAKNLNSEKAFELL 477 (861)
Q Consensus 435 ~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 477 (861)
..+++++|.+ ++..++.. .....++..+.+.|..++|+++.
T Consensus 611 ~~~~~~~a~~~~l~~i~~~--~~~~~~~~~l~~~~~~~~a~~~~ 652 (814)
T 3mkq_A 611 LRGEIEEAIENVLPNVEGK--DSLTKIARFLEGQEYYEEALNIS 652 (814)
T ss_dssp HTTCHHHHHHHTGGGCCCH--HHHHHHHHHHHHTTCHHHHHHHC
T ss_pred HhCCHHHHHHHHHhcCCch--HHHHHHHHHHHhCCChHHheecC
Confidence 4566666665 44333201 11244555555566666665543
No 221
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.28 E-value=0.0026 Score=66.43 Aligned_cols=311 Identities=11% Similarity=0.102 Sum_probs=173.1
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCC-CccchHHHH
Q 002975 246 KNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLA-LDVCVGCSL 324 (861)
Q Consensus 246 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~l 324 (861)
.++.+|-.+-.+|+..+.+.-|.-.--.+.- .|| ....++.-|-..|.+++-..+++..+ |++ ....+++-|
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTEL 269 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTEL 269 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHH
Confidence 4788999999999999998877554433332 122 23345555777788887777766544 332 345578888
Q ss_pred HHHHHhCCCCCCHHHHHHHHhccCC----C-------CcccHHHHHHHHHhcCCChHHHHHHHHHHhhC-----------
Q 002975 325 VDMYAKCTVDGSVDDSRKVFDRMLD----H-------NVMSWTAIITGYVQSGGRDKEAVKLFSDMIQG----------- 382 (861)
Q Consensus 325 i~~y~~~g~~g~~~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~----------- 382 (861)
.-.|+|.. .++-.+-++..-. | ....|.-++-.|.+... ++.|... |.+.
T Consensus 270 aILYsKY~----PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE-~DnA~lt---Mi~h~~~Aw~h~~Fk 341 (624)
T 3lvg_A 270 AILYSKFK----PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEE-YDNAIIT---MMNHPTDAWKEGQFK 341 (624)
T ss_dssp HHHHHSSC----TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTC-HHHHHHT---TTSCHHHHCCGGGGT
T ss_pred HHHHHhcC----HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchh-HHHHHHH---HHhCChhhccHHHHH
Confidence 88898864 3443333332211 2 34568888888888877 7766432 2221
Q ss_pred ---CCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHH-
Q 002975 383 ---QVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYN- 458 (861)
Q Consensus 383 ---g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~- 458 (861)
.-..|...|-..+.-|.... +..--.++.-+. ..+.+ +..++++.+.|++.-...++..+...|...-|
T Consensus 342 dii~KVaN~EiyYKAi~FYL~e~-P~lL~DLL~vL~-prlDh-----~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNe 414 (624)
T 3lvg_A 342 DIITKVANVELYYRAIQFYLEFK-PLLLNDLLMVLS-PRLDH-----TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNE 414 (624)
T ss_dssp TTGGGCSCSHHHHHHHHHHTTSC-CTTSHHHHHHHC-TTCCS-----TTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHH
T ss_pred HHHHHcchHHHHHHHHHHHHHhC-hHHHHHHHHhcc-ccCCh-----HHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHH
Confidence 01234444444444443321 111111111110 00111 23455566666666666666666555554443
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC
Q 002975 459 TMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCA 538 (861)
Q Consensus 459 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 538 (861)
++-..|....+++.- ..-+..|-+-..+..|.++ .+ ..-...-..-...|.+.+
T Consensus 415 Aln~L~IEEEDy~~L-------------------R~SId~ydNFD~i~LA~rL----Ek---HeL~eFRrIAA~LYkkn~ 468 (624)
T 3lvg_A 415 SLNNLFITEEDYQAL-------------------RTSIDAYDNFDNISLAQRL----EK---HELIEFRRIAAYLFKGNN 468 (624)
T ss_dssp HHHHHHHHTTCCHHH-------------------HHTTSSCCCSCTTHHHHHH----HT---CSSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhhHHHH-------------------HHHHHHhccccHHHHHHHH----hh---CchHHHHHHHHHHHHhcc
Confidence 344455555555421 1222233333333333332 11 112223334455688899
Q ss_pred CHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 002975 539 NVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKH 612 (861)
Q Consensus 539 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 612 (861)
+|+++..+.++=. .|.-.|...+..|+.+-|.++++-..+.| +...|.+.+-.|...=+.|.++++
T Consensus 469 rw~qsi~l~KkDk-----lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 469 RWKQSVELCKKDS-----LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHHHSSCSSTTC-----CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred cHHHHHHHHHhcc-----cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 9999887654321 12223445567888999999999888866 557888888888887777776654
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.96 E-value=0.02 Score=56.25 Aligned_cols=87 Identities=14% Similarity=0.115 Sum_probs=68.6
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH-----hCCHHHHHHHHHHHhccCCCC-CchHHHHHHHHHHc-CChhH
Q 002975 642 LTEALEFIRSM-PLSAD---VLVWRTFLGACRV-----HGDTELGKHAAEMILEQDPQD-PAAHILLSNLYASA-GHWEY 710 (861)
Q Consensus 642 ~~eA~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~L~~~y~~~-g~~~~ 710 (861)
..+|...+++. .+.|+ ...|.+|+..|.. -|+.++|++.++++++++|+. ..+++.++..|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34455555443 24555 5678888888877 489999999999999999975 99999999999885 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 002975 711 VANIRKRMKERNLIKEAG 728 (861)
Q Consensus 711 a~~~~~~m~~~~~~~~~~ 728 (861)
+.+.+++......+..|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998877665454
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.84 E-value=0.042 Score=45.43 Aligned_cols=44 Identities=25% Similarity=0.207 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 002975 656 ADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLS 699 (861)
Q Consensus 656 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~ 699 (861)
+...++..|..++.+.|+.+.|...++++++++|++..+...+.
T Consensus 44 ~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 44 DKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 34678889999999999999999999999999999977755543
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.58 E-value=0.11 Score=61.54 Aligned_cols=141 Identities=11% Similarity=0.026 Sum_probs=67.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHH
Q 002975 528 NALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLIS 607 (861)
Q Consensus 528 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 607 (861)
..++..+.+.|..++|.++.+... .-.......|++++|.++.+.+ .+...|..+...|.+.|+++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~--------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD--------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH--------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCCcc--------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHH
Confidence 445555555555555554442110 0112233455555555543221 23445555555555555555
Q ss_pred HHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Q 002975 608 EGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQ 687 (861)
Q Consensus 608 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 687 (861)
.|.+.|..+. + |..+..++...|+.+ .+..+...+...|+.+.|..++.++
T Consensus 699 ~A~~~y~~~~-d---------~~~l~~l~~~~~~~~----------------~~~~~~~~a~~~~~~~~A~~~~~~~--- 749 (814)
T 3mkq_A 699 LAIEAFTNAH-D---------LESLFLLHSSFNNKE----------------GLVTLAKDAETTGKFNLAFNAYWIA--- 749 (814)
T ss_dssp HHHHHHHHHT-C---------HHHHHHHHHHTTCHH----------------HHHHHHHHHHHTTCHHHHHHHHHHH---
T ss_pred HHHHHHHHcc-C---------hhhhHHHHHHcCCHH----------------HHHHHHHHHHHcCchHHHHHHHHHc---
Confidence 5555554443 1 122222222233222 2233334444455555555443331
Q ss_pred CCCCCchHHHHHHHHHHcCChhHHHHHHH
Q 002975 688 DPQDPAAHILLSNLYASAGHWEYVANIRK 716 (861)
Q Consensus 688 ~p~~~~~~~~L~~~y~~~g~~~~a~~~~~ 716 (861)
+-+....++|.+.++|++|..+.+
T Consensus 750 -----g~~~~a~~~~~~~~~~~~A~~lA~ 773 (814)
T 3mkq_A 750 -----GDIQGAKDLLIKSQRFSEAAFLGS 773 (814)
T ss_dssp -----TCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHcCChHHHHHHHH
Confidence 223344566888888888888766
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.24 E-value=0.19 Score=44.23 Aligned_cols=94 Identities=13% Similarity=0.001 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHH
Q 002975 571 AARALEIFYKMLADGIKPNGITYIAVLSACSHAG---LISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALE 647 (861)
Q Consensus 571 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~ 647 (861)
...+.+.|.+..+.|. ++..+-..+..++.+.+ ++++|+.+|+...+.. .|+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~---------------------- 68 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKE---------------------- 68 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHH----------------------
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--Ccc----------------------
Confidence 3455566666666553 56666666888888877 5668888887776321 121
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHH
Q 002975 648 FIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHIL 697 (861)
Q Consensus 648 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 697 (861)
-+...+-.|.-+|.+.|+++.|.+.++++++++|+|..+..+
T Consensus 69 --------~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 69 --------EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp --------HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred --------chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 012344567777899999999999999999999988655443
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.01 E-value=0.15 Score=40.96 Aligned_cols=68 Identities=7% Similarity=-0.024 Sum_probs=51.2
Q ss_pred CChhHHHHHHHHhhhcCC---HHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Q 002975 624 QRMEHYACMVDLLGRSGS---LTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD 691 (861)
Q Consensus 624 p~~~~~~~l~~~~~r~g~---~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 691 (861)
.+...+..+..++...++ .++|..++++.. ..| ++..+..+...+...|+++.|+..++++++.+|++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 455666666666654443 678888887763 344 56677778888999999999999999999999984
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.86 E-value=0.54 Score=42.44 Aligned_cols=129 Identities=15% Similarity=0.107 Sum_probs=74.0
Q ss_pred HHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 002975 532 SMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWK 611 (861)
Q Consensus 532 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 611 (861)
+....+|+++.|.++.+++ .+...|..|......+|+++-|...|.+... |..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4455678888887777665 4566788888888888888888877766543 2223333444566554443
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002975 612 HFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMI 684 (861)
Q Consensus 612 ~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 684 (861)
+-+... ..| -++.-...+.-.|+++++.+++.+...-|.+. -..+.+|-.+.|.++.+.+
T Consensus 82 la~iA~-~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQ-TRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHH-HTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHH-HCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 333222 111 12333344556778888887777764322211 1234566666666665443
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.60 E-value=0.13 Score=43.39 Aligned_cols=68 Identities=9% Similarity=-0.062 Sum_probs=30.4
Q ss_pred CChhHHHHHHHHhhhcCCHHH---HHHHHHhCCCC--C--CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Q 002975 624 QRMEHYACMVDLLGRSGSLTE---ALEFIRSMPLS--A--DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD 691 (861)
Q Consensus 624 p~~~~~~~l~~~~~r~g~~~e---A~~~~~~~~~~--p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 691 (861)
++..+--.+.-+|.+..+..+ ++.+++..-.. | .-...-.|.-++.+.|+++.|.+.++.+++.+|+|
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 444443334444444444333 55555544211 1 11122233344555555555555555555555554
No 229
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.50 E-value=0.11 Score=59.01 Aligned_cols=54 Identities=15% Similarity=0.007 Sum_probs=50.1
Q ss_pred HHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 665 LGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 665 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
..-|...|+++.|..++++++..-|++..++..|+.+|...|+|+.|.-..+.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 344778899999999999999999999999999999999999999999988876
No 230
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.27 E-value=0.85 Score=39.20 Aligned_cols=91 Identities=12% Similarity=0.036 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHhccCCCC-CchHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCcee
Q 002975 655 SADVLVWRTFLGACRVHG---DTELGKHAAEMILEQDPQD-PAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCS 730 (861)
Q Consensus 655 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~-~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s 730 (861)
.|+..+--.+.+++.+.. +..+|+.+++.++...|.+ -...+.|+-.|.+.|++++|.+..+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~---------- 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---------- 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh----------
Confidence 455555555666665554 4556777777777777743 34556777788888888888887776665
Q ss_pred EEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCcc
Q 002975 731 WIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKEFGYL 771 (861)
Q Consensus 731 ~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~ 771 (861)
..|...+...--..+.++|.+.|.+
T Consensus 106 ----------------~eP~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 106 ----------------HERNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp ----------------TCCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred ----------------cCCCcHHHHHHHHHHHHHHHHhchh
Confidence 2355555544455556677777654
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.22 E-value=1.4 Score=39.66 Aligned_cols=102 Identities=11% Similarity=0.132 Sum_probs=59.7
Q ss_pred HHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHH
Q 002975 432 MYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQI 511 (861)
Q Consensus 432 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 511 (861)
...++|+++.|.++.+.+ .+...|..|.......|+++-|.+.|....+ +..+.-.|...|+.+.-..+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345677777777777665 3456788888887888888888777777653 22334444445555555444
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhc
Q 002975 512 HARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEM 550 (861)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 550 (861)
-+.....| . ++.....+.-.|+++++.++|.+.
T Consensus 83 a~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 83 QNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 44444433 1 233333444556666666666554
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.50 E-value=0.63 Score=38.13 Aligned_cols=63 Identities=14% Similarity=-0.041 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhccC-------CCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 658 VLVWRTFLGACRVHGDTELGKHAAEMILEQD-------PQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 658 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+.-.-.|+..+...|+++.|+.-++++++.. +..+..+..|+.+|.+.|++++|....+...+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3445567888888899999999998888753 23456788999999999999999999998865
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.04 E-value=1.3 Score=43.54 Aligned_cols=112 Identities=12% Similarity=0.095 Sum_probs=64.5
Q ss_pred ccCCHHHHHHHHHhccCCCc--hHHHHHHH-HHHhc--CC------hHHHHHHHHHHHHcCCCCC---hHHHHHHHHHHH
Q 002975 536 RCANVEAAFQVFKEMEDRNV--ISWTSMIT-GFAKH--GF------AARALEIFYKMLADGIKPN---GITYIAVLSACS 601 (861)
Q Consensus 536 ~~g~~~~A~~~~~~~~~~~~--~~~~~li~-~~~~~--g~------~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~ 601 (861)
+.|+..+-.+.+.++...|+ ..|..++. +++.. |. ..+|...+++.++ +.|+ ...|..+...|.
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~ 210 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYA 210 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHH
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHH
Confidence 34444444555555543333 46666554 33332 22 4566777777777 5666 446777777777
Q ss_pred hc-----CCHHHHHHHHHHHHhhcCCCC--ChhHHHHHHHHhhhc-CCHHHHHHHHHhC
Q 002975 602 HA-----GLISEGWKHFRSMYDEHGIVQ--RMEHYACMVDLLGRS-GSLTEALEFIRSM 652 (861)
Q Consensus 602 ~~-----g~~~~a~~~~~~m~~~~~~~p--~~~~~~~l~~~~~r~-g~~~eA~~~~~~~ 652 (861)
.. |+.++|.++|++.. .+.| +..++....+.|++. |+.++|.+.+++.
T Consensus 211 ~vPp~~gGd~ekA~~~ferAL---~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 211 AAPESFGGGMEKAHTAFEHLT---RYCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp HSCTTTTCCHHHHHHHHHHHH---HHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred hCCCccCCCHHHHHHHHHHHH---HhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 63 77777777777776 2344 255555555655553 5566666555553
No 234
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.67 E-value=5.6 Score=33.71 Aligned_cols=80 Identities=11% Similarity=0.054 Sum_probs=52.1
Q ss_pred ccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002975 536 RCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRS 615 (861)
Q Consensus 536 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 615 (861)
+||++......+-.+. .+....+..+..+...|+-++-.+++.++.. +.+|++.....+..||.+.|+..++.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 4555555555544442 2334455566777777887777777777533 2466777777788888888888888887777
Q ss_pred HH
Q 002975 616 MY 617 (861)
Q Consensus 616 m~ 617 (861)
.-
T Consensus 151 AC 152 (172)
T 1wy6_A 151 AC 152 (172)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 235
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=91.31 E-value=1.4 Score=46.51 Aligned_cols=406 Identities=12% Similarity=0.062 Sum_probs=193.2
Q ss_pred CCcchHHHHH-HHhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCcchhHHHHHHHHHcCCCCCcchHHHHH
Q 002975 42 TSEPLSNRLI-YHLNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLI 120 (861)
Q Consensus 42 ~~~~~~~~l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 120 (861)
..+..|+++. +.+..+++.+|+.-|-+ .-|+..|..++.++.+.|.++.-...+...++.. .++.+=+.|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi 123 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELI 123 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHH
Confidence 3445555555 77788888888865522 2366778888888888888888877766665542 3455566788
Q ss_pred HHHhcCCChHHHHHHHHhcCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHc--------------------CCCCCc
Q 002975 121 SLYSKCGDLNEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLEL--------------------GFCPNE 180 (861)
Q Consensus 121 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------------g~~p~~ 180 (861)
-+|++.+++.+-.+++. .||+.--..+..-|...|.++.|.-+|..+..- .-.-+.
T Consensus 124 ~ayAk~~rL~elEefl~----~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 124 FALAKTNRLAELEEFIN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HHHHTSCSSSTTTSTTS----CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HHHHhhCcHHHHHHHHc----CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 88888776554222221 133333333333333333333333333221100 001234
Q ss_pred ccHHHHHHHhcCC------------------------------cchhhhhhhhhhhhhccCCCCchhHHHHHHHHhhhCC
Q 002975 181 YCFSAVIRACSNT------------------------------ENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGS 230 (861)
Q Consensus 181 ~t~~~ll~~~~~~------------------------------~~~~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~ 230 (861)
.||-.+-.+|... |.+++-..+++..+.. .....-+++-|.=.|+| -
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglgl--ErAHmGmFTELaILYsK-Y 276 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSK-F 276 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS--TTCCHHHHHHHHHHHHS-S
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC--CchhHHHHHHHHHHHHh-c
Confidence 4555555555444 4444444444444321 13455677777777777 3
Q ss_pred CCHHHHHHHHhcCC----CC-------CcchHHHHHHHHHhcCCchHHHHHHHHHHHC-----------C---CCCCccc
Q 002975 231 VDLESAYKVFDKMT----EK-------NTVGWTLMITRCTQLGCPRDAIRLFLDMILS-----------G---FLPDRFT 285 (861)
Q Consensus 231 g~~~~A~~~f~~~~----~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----------g---~~pd~~t 285 (861)
+.++-.+-++..- -| ....|.-++-.|.+-..++.|... |.+. . -..|...
T Consensus 277 -~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h~~~Aw~h~~Fkdii~KVaN~Ei 352 (624)
T 3lvg_A 277 -KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVEL 352 (624)
T ss_dssp -CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSCHHHHCCGGGGTTTGGGCSCSHH
T ss_pred -CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhCChhhccHHHHHHHHHHcchHHH
Confidence 2333333332211 12 445688888888887777766543 2211 0 0123334
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCcccHH-HHHHHHHh
Q 002975 286 LSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWT-AIITGYVQ 364 (861)
Q Consensus 286 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~ 364 (861)
|-..|..|....-. .--.++.-+ ....|. +..++++.+.|. +......+..+...|...-| ++-..|..
T Consensus 353 yYKAi~FYL~e~P~-lL~DLL~vL---~prlDh---~RvV~~~~k~~~---LpLIkpYL~~Vq~~N~~aVNeAln~L~IE 422 (624)
T 3lvg_A 353 YYRAIQFYLEFKPL-LLNDLLMVL---SPRLDH---TRAVNYFSKVKQ---LPLVKPYLRSVQNHNNKSVNESLNNLFIT 422 (624)
T ss_dssp HHHHHHHHTTSCCT-TSHHHHHHH---CTTCCS---TTTHHHHHTTTC---GGGGTGGGTSCCCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChH-HHHHHHHhc---cccCCh---HHHHHHHHhcCC---chhhHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 44444444332110 000000000 001111 123344444443 55555555555555544433 44455555
Q ss_pred cCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHH
Q 002975 365 SGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARK 444 (861)
Q Consensus 365 ~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 444 (861)
..+ ++. ++.- +..|-+-.....|.++= ++ .-...-..-...|.+.++++++..
T Consensus 423 EED-y~~----LR~S---------------Id~ydNFD~i~LA~rLE----kH---eL~eFRrIAA~LYkkn~rw~qsi~ 475 (624)
T 3lvg_A 423 EED-YQA----LRTS---------------IDAYDNFDNISLAQRLE----KH---ELIEFRRIAAYLFKGNNRWKQSVE 475 (624)
T ss_dssp TTC-CHH----HHHT---------------TSSCCCSCTTHHHHHHH----TC---SSHHHHHHHHHHHHTTCHHHHHSS
T ss_pred hhh-HHH----HHHH---------------HHHhccccHHHHHHHHh----hC---chHHHHHHHHHHHHhcccHHHHHH
Confidence 554 321 1111 22222233333333221 11 111122233455677777777765
Q ss_pred HHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHH
Q 002975 445 AFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQI 511 (861)
Q Consensus 445 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 511 (861)
+..+= ..|--.|..-+..|+.+-|.++++-..+.| +...|...+-.|...=+.+.+.++
T Consensus 476 l~KkD-----klykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 476 LCKKD-----SLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp CSSTT-----CCTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHhc-----ccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 44221 122223344455666666766666666554 334566666666666555554443
No 236
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.13 E-value=0.96 Score=38.35 Aligned_cols=64 Identities=11% Similarity=0.046 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHHhC---CHHHHHHHHHHHhccCCC-CCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 657 DVLVWRTFLGACRVHG---DTELGKHAAEMILEQDPQ-DPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 657 ~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
++.+--.+.+++.+.. +...|+.+++.+++.+|. .-..+..|+-.+.+.|++++|.+..+.+.+
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3333334444443333 334555555555555553 233444555566666666666665555543
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.45 E-value=3.2 Score=34.95 Aligned_cols=89 Identities=10% Similarity=-0.002 Sum_probs=58.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHH---HHHHHHHHHhhcCCCC--ChhHHHHHHHHhhhcC
Q 002975 566 AKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISE---GWKHFRSMYDEHGIVQ--RMEHYACMVDLLGRSG 640 (861)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~m~~~~~~~p--~~~~~~~l~~~~~r~g 640 (861)
........+.+-|.+....|. |+..+-..+..++.+.....+ |+.+++...+. -.| ..+..-.|.-++.|.|
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhh
Confidence 333445556666666666553 666666668888888877655 88888887632 123 2233344566788999
Q ss_pred CHHHHHHHHHhCC-CCCC
Q 002975 641 SLTEALEFIRSMP-LSAD 657 (861)
Q Consensus 641 ~~~eA~~~~~~~~-~~p~ 657 (861)
++++|.++++.+. .+|+
T Consensus 89 ~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 89 EYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp CHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHhCCC
Confidence 9999999988763 4554
No 238
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=88.22 E-value=36 Score=37.85 Aligned_cols=123 Identities=12% Similarity=0.027 Sum_probs=74.5
Q ss_pred CChHHHHHHHHHHHHcC-CCCChH--HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHH
Q 002975 569 GFAARALEIFYKMLADG-IKPNGI--TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEA 645 (861)
Q Consensus 569 g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA 645 (861)
.+.+.|..+|....+.+ +.+... ....+.......+...++...+..... ..++.....-.+....+.|+.+.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHH
Confidence 37899999998887543 222221 223333333444535566677766542 223333333344455578999999
Q ss_pred HHHHHhCCCCC-CHHHHH-HHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHH
Q 002975 646 LEFIRSMPLSA-DVLVWR-TFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILL 698 (861)
Q Consensus 646 ~~~~~~~~~~p-~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 698 (861)
...|+.|+..+ +..-|. =+..+....|+.+.|...++++.+ + .+.|-.|
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~l 355 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q--RGFYPMV 355 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHH
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHH
Confidence 99999997443 222222 244566778999999999999875 3 2455555
No 239
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.39 E-value=25 Score=35.08 Aligned_cols=166 Identities=12% Similarity=0.041 Sum_probs=97.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHH----HHHHhhcCCCCCHHHHHHHHHHhhccc
Q 002975 428 SLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFEL----LHEIEDTGVGTSAYTFASLLSGASSIG 503 (861)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~a~~~~~ 503 (861)
++..=|.+.+++++|.+++..- ...+.+.|+...|-++ ++-..+.++++|..+...++..+....
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p 106 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD 106 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 3444577788888888776542 3445566776665554 444455678888888777777765533
Q ss_pred chH-HHHHHHHHHHH----hC--CCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhc---CChHH
Q 002975 504 AIG-KGEQIHARIIK----SG--FESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKH---GFAAR 573 (861)
Q Consensus 504 ~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~ 573 (861)
.-+ .-..+...+++ .| -.-++.....+...|.+.|++.+|+.-|-.-...|...+..|+.-+... |...+
T Consensus 107 ~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e 186 (312)
T 2wpv_A 107 PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDST 186 (312)
T ss_dssp TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcch
Confidence 111 12333344432 22 1247788888999999999999998877633323455555555444333 33333
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 002975 574 ALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDE 619 (861)
Q Consensus 574 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 619 (861)
+ |...-.+++ -|.-.|++..|..+|+...+.
T Consensus 187 ~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 187 V--------------AEFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp H--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred H--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 2 111112232 234578888888888876533
No 240
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.01 E-value=6.7 Score=30.99 Aligned_cols=86 Identities=10% Similarity=0.139 Sum_probs=59.6
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002975 504 AIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLA 583 (861)
Q Consensus 504 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 583 (861)
..++|..|-+-+...+- ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|..+++...+.++-.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666666553 33333333445677899999999999999999999977644 477888888877777777
Q ss_pred cCCCCChHHHH
Q 002975 584 DGIKPNGITYI 594 (861)
Q Consensus 584 ~g~~p~~~t~~ 594 (861)
+| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 66 55555554
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.06 E-value=7.9 Score=40.49 Aligned_cols=67 Identities=12% Similarity=-0.004 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh-----CCCccC
Q 002975 660 VWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE-----RNLIKE 726 (861)
Q Consensus 660 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~-----~~~~~~ 726 (861)
+...++.++...|+.+.+...++.++..+|-+...|..|..+|...|+..+|.+.++..++ .|+.+.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~ 244 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 244 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3455677788899999999999999999999999999999999999999999998887643 366544
No 242
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.92 E-value=6.3 Score=31.08 Aligned_cols=86 Identities=10% Similarity=0.046 Sum_probs=60.6
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002975 504 AIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLA 583 (861)
Q Consensus 504 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 583 (861)
..++|..|-+-+...+- ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|..+++...+.++-.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666666553 33333333445677899999999999998999999977643 578888888888878887
Q ss_pred cCCCCChHHHH
Q 002975 584 DGIKPNGITYI 594 (861)
Q Consensus 584 ~g~~p~~~t~~ 594 (861)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 76 56555554
No 243
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=84.66 E-value=55 Score=36.53 Aligned_cols=84 Identities=7% Similarity=0.029 Sum_probs=47.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc---
Q 002975 460 MVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSR--- 536 (861)
Q Consensus 460 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~--- 536 (861)
....+.-.|+++.|++.+... ...|.+.+...+.-+.-.+- ...++..- .+ .| ..-+..||..|++
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHhh
Confidence 456667789999999887754 35667777776665544432 11111110 01 11 2236678888875
Q ss_pred cCCHHHHHHHHHhccCCC
Q 002975 537 CANVEAAFQVFKEMEDRN 554 (861)
Q Consensus 537 ~g~~~~A~~~~~~~~~~~ 554 (861)
..+..+|.+.|--+.-++
T Consensus 369 ~td~~~Al~Y~~li~l~~ 386 (661)
T 2qx5_A 369 YSDPRVAVEYLVLITLNE 386 (661)
T ss_dssp TTCHHHHHHHHHGGGGSC
T ss_pred cCCHHHHHHHHHHHhccC
Confidence 478888888887765443
No 244
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=84.36 E-value=6 Score=35.02 Aligned_cols=28 Identities=11% Similarity=0.102 Sum_probs=18.4
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhCCC
Q 002975 627 EHYACMVDLLGRSGSLTEALEFIRSMPL 654 (861)
Q Consensus 627 ~~~~~l~~~~~r~g~~~eA~~~~~~~~~ 654 (861)
+.---+...|...|+.++|+..++.+|.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 3333455667777777777777777763
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.44 E-value=21 Score=38.09 Aligned_cols=50 Identities=10% Similarity=0.035 Sum_probs=30.7
Q ss_pred CCChHHHHHHHHHHhh-----CCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHH
Q 002975 366 GGRDKEAVKLFSDMIQ-----GQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVK 416 (861)
Q Consensus 366 g~~~~~A~~l~~~m~~-----~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 416 (861)
++ +++|++.+..+.+ ....-.......++..|...++++...+.+..+.+
T Consensus 30 ~~-~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 ND-CNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HH-HHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CC-HHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55 7777777655543 12333445566677777777777777666655543
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=82.44 E-value=5.6 Score=35.23 Aligned_cols=121 Identities=14% Similarity=0.096 Sum_probs=62.2
Q ss_pred cCCCCChH--HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCh-------hHHHHHHHHhhhcCCHHHHHHHHHhC--
Q 002975 584 DGIKPNGI--TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRM-------EHYACMVDLLGRSGSLTEALEFIRSM-- 652 (861)
Q Consensus 584 ~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-------~~~~~l~~~~~r~g~~~eA~~~~~~~-- 652 (861)
.|+.|... ++..-+..+...|.++.|+-+.+.+....+..|+. .++..+.+++...|++..|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 46666543 44455666777788888877776655433333432 24555667777777777777777663
Q ss_pred -----CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 653 -----PLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 653 -----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
+..+.. ..++ +. ......-..+ +.+.+.-+.++.+|.+.|++++|..+.+.+
T Consensus 92 ~~k~l~k~~s~--~~~~-------~~----~ss~p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 92 QKKALSKTSKV--RPST-------GN----SASTPQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHCC---------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHhcCCCc--cccc-------cc----cCCCcccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 111111 0000 00 0000000111 223356678999999999999999988754
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.67 E-value=58 Score=34.55 Aligned_cols=94 Identities=12% Similarity=0.126 Sum_probs=68.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cCCCCC----hhH
Q 002975 559 TSMITGFAKHGFAARALEIFYKMLAD--GIKPN---GITYIAVLSACSHAGLISEGWKHFRSMYDE-HGIVQR----MEH 628 (861)
Q Consensus 559 ~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~----~~~ 628 (861)
..|...|...|++.+|..++.++... |.... ...+...+..|...+++..|..+++++... ....+. ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45778888999999999999998754 22222 235666777899999999999999887421 222222 245
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC
Q 002975 629 YACMVDLLGRSGSLTEALEFIRSM 652 (861)
Q Consensus 629 ~~~l~~~~~r~g~~~eA~~~~~~~ 652 (861)
|.+++.++...+++.+|...|.++
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 788889999999999998877665
No 248
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.59 E-value=7.6 Score=30.91 Aligned_cols=63 Identities=16% Similarity=0.157 Sum_probs=49.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 002975 570 FAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVD 634 (861)
Q Consensus 570 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 634 (861)
+.-+...-++.+....+.|++....+.+.||.+.+++.-|.++|+.++.+.|-. ...|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 344566667777777889999999999999999999999999999887655444 456766654
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=81.53 E-value=45 Score=40.55 Aligned_cols=143 Identities=12% Similarity=0.056 Sum_probs=83.3
Q ss_pred HHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---C------------------
Q 002975 495 LLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---R------------------ 553 (861)
Q Consensus 495 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~------------------ 553 (861)
++..+...+..+.+.++.... +.++...-.+..+|..+|++++|.+.|++... .
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 334444455555444433221 33333334556677777888888888776531 0
Q ss_pred -----CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 002975 554 -----NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNG----ITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ 624 (861)
Q Consensus 554 -----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 624 (861)
-..-|.-++..+-++|.++.++++-+..++....-+. ..|..+..++...|++++|...+-.+. +. .-
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p-d~--~~ 969 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS-TT--PL 969 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH-HS--SS
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC-CH--HH
Confidence 0112556677777888888888777766664211111 146677788888888888877776664 21 22
Q ss_pred ChhHHHHHHHHhhhcCCHHHH
Q 002975 625 RMEHYACMVDLLGRSGSLTEA 645 (861)
Q Consensus 625 ~~~~~~~l~~~~~r~g~~~eA 645 (861)
.......+|..++..|.+++=
T Consensus 970 r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhh
Confidence 345566666666666665543
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.13 E-value=13 Score=29.57 Aligned_cols=50 Identities=14% Similarity=0.148 Sum_probs=39.8
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHH
Q 002975 649 IRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILL 698 (861)
Q Consensus 649 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 698 (861)
+-.+..-|++.+..+.+.+||+.+|+..|.+.+|-+...-.+...+|-.+
T Consensus 36 l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~ 85 (109)
T 1v54_E 36 LVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 85 (109)
T ss_dssp HTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHH
Confidence 33445789999999999999999999999999998887655445556544
No 251
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=81.01 E-value=23 Score=29.99 Aligned_cols=78 Identities=10% Similarity=0.095 Sum_probs=51.3
Q ss_pred CCCChHHHHHHHHHHHhcCCH---HHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHH
Q 002975 586 IKPNGITYIAVLSACSHAGLI---SEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWR 662 (861)
Q Consensus 586 ~~p~~~t~~~ll~a~~~~g~~---~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~ 662 (861)
-.|+..|-..+..++.+.... .+|+.+++.+.+.. |. -.-..+-
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~---~~------------------------------~~Rd~LY 82 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA---ES------------------------------RRRECLY 82 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC---GG------------------------------GHHHHHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---cc------------------------------hhHHHHH
Confidence 355655655577777776653 45666666655221 11 0123444
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHH
Q 002975 663 TFLGACRVHGDTELGKHAAEMILEQDPQDPAAHI 696 (861)
Q Consensus 663 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 696 (861)
-|.-++.+.|+++.|.+..+.+++.+|+|..+..
T Consensus 83 yLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 83 YLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 5667889999999999999999999998854433
No 252
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=80.60 E-value=44 Score=37.36 Aligned_cols=80 Identities=10% Similarity=-0.016 Sum_probs=39.5
Q ss_pred HHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHH--
Q 002975 358 IITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYAR-- 435 (861)
Q Consensus 358 li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~-- 435 (861)
....+.-.|+ ++.|++++... ...|.+.+...+.-+.-.+- ...++..- .+ .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgq-FE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F 367 (661)
T 2qx5_A 300 YLQTLLLSGL-YGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSF 367 (661)
T ss_dssp HHHHHHHTTC-HHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTT
T ss_pred HHHHHHHHhh-HHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHh
Confidence 3445556687 88888877654 34566666666665543332 11111110 00 11 2234556666654
Q ss_pred -cCCHHHHHHHHHhc
Q 002975 436 -SGRMEDARKAFESL 449 (861)
Q Consensus 436 -~g~~~~A~~~~~~~ 449 (861)
..+..+|.++|--+
T Consensus 368 ~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 368 RYSDPRVAVEYLVLI 382 (661)
T ss_dssp TTTCHHHHHHHHHGG
T ss_pred hcCCHHHHHHHHHHH
Confidence 46677777766555
No 253
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=80.27 E-value=95 Score=36.17 Aligned_cols=147 Identities=10% Similarity=0.074 Sum_probs=65.8
Q ss_pred HHHcCCHHHHHHHHHhcCCC-Ce--ehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHH-HHH---HHHHHhhcccch
Q 002975 433 YARSGRMEDARKAFESLFEK-NL--VSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAY-TFA---SLLSGASSIGAI 505 (861)
Q Consensus 433 ~~~~g~~~~A~~~~~~~~~~-~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~---~ll~a~~~~~~~ 505 (861)
|.-.|+-+....++..+.+. +. .-.-++.-++...|+.+.+..+++.+... .|.. -|. .+.-+|+..|+.
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCH
T ss_pred hcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCH
Confidence 33455555555555443211 11 11222223344566666666666666542 1221 222 233456667776
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhcc-CCCchHHHH--HHHHHHhcCCh-HHHHHHHHHH
Q 002975 506 GKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEME-DRNVISWTS--MITGFAKHGFA-ARALEIFYKM 581 (861)
Q Consensus 506 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~--li~~~~~~g~~-~~A~~~~~~m 581 (861)
....+++..+.... ..++.-...+.-+..-.|+.+.+.++++.+. ..|...-.. +.-|....|.. .+|++++..+
T Consensus 577 ~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L 655 (963)
T 4ady_A 577 SAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPL 655 (963)
T ss_dssp HHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 66666666665532 2222222222223333455555555555443 233332222 22233333333 4666666666
Q ss_pred HH
Q 002975 582 LA 583 (861)
Q Consensus 582 ~~ 583 (861)
..
T Consensus 656 ~~ 657 (963)
T 4ady_A 656 TK 657 (963)
T ss_dssp HT
T ss_pred cc
Confidence 54
No 254
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=77.81 E-value=12 Score=42.49 Aligned_cols=25 Identities=8% Similarity=0.107 Sum_probs=16.2
Q ss_pred HHHHHHhcCC-hhHHHHHHHHHhhcC
Q 002975 460 MVDAYAKNLN-SEKAFELLHEIEDTG 484 (861)
Q Consensus 460 li~~~~~~g~-~~~A~~l~~~m~~~g 484 (861)
++..+...++ .+.|+.+|+++....
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~~ 279 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKKD 279 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHcccccHHHHHHHHHHHHHhhC
Confidence 3333444555 577888998888764
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=77.72 E-value=13 Score=38.91 Aligned_cols=69 Identities=14% Similarity=0.115 Sum_probs=52.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHH----hhcCCCCChhHH
Q 002975 559 TSMITGFAKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMY----DEHGIVQRMEHY 629 (861)
Q Consensus 559 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~~ 629 (861)
..++..+...|++++|+..++.+.. ..| +...+..++.++...|+..+|++.|+... ++.|+.|...+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3456677788888888888888877 344 66688888888888899888888888764 356888876543
No 256
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=77.43 E-value=68 Score=33.22 Aligned_cols=162 Identities=10% Similarity=0.010 Sum_probs=79.0
Q ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHh-CCCC---chhHHHHHHHHHHcc-CCHHHHHHHHHhccC---CCchHH---
Q 002975 490 YTFASLLSGASSIGAIGKGEQIHARIIKS-GFES---NHCIYNALISMYSRC-ANVEAAFQVFKEMED---RNVISW--- 558 (861)
Q Consensus 490 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~y~~~-g~~~~A~~~~~~~~~---~~~~~~--- 558 (861)
.....+...|.+.|+.++..+++.....- +.-+ .......|++.+... +..+.-.++..+..+ .+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666667777776666666554321 1011 233445666666554 233333444433331 122233
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCCCChhHH
Q 002975 559 ---TSMITGFAKHGFAARALEIFYKMLADGIKPNG-----ITYIAVLSACSHAGLISEGWKHFRSMYDEH-GIVQRMEHY 629 (861)
Q Consensus 559 ---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~~~~~ 629 (861)
.-++..|...|++.+|++++.++.+.=-+.|. ..+..-+..|...+++.++..++....... .+.+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 13566667777777777777666654112121 134444555666666666666666554322 121222211
Q ss_pred ----HHHHHHhh-hcCCHHHHHHHHHh
Q 002975 630 ----ACMVDLLG-RSGSLTEALEFIRS 651 (861)
Q Consensus 630 ----~~l~~~~~-r~g~~~eA~~~~~~ 651 (861)
.+-.-++. ..+++.+|...|-+
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence 11122334 56666666655544
No 257
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.06 E-value=19 Score=34.69 Aligned_cols=123 Identities=12% Similarity=0.074 Sum_probs=59.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHH
Q 002975 565 FAKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLT 643 (861)
Q Consensus 565 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~ 643 (861)
..+.|+.++|++....-++. .| |...-..++.-+|-.|+++.|.+-++... .+.|+...-..+..-+.++....
T Consensus 7 ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a---~l~p~~~~~a~~yr~lI~aE~~R 81 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSI---KLFPEYLPGASQLRHLVKAAQAR 81 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCchhhHHHHHHHHHHHHHHHH
Confidence 34556666666666555553 33 33344445555666666666666555544 22333221111111111111111
Q ss_pred HHHHHHHh--CC-CCCCHHHHHH-HHHHH--HHhCCHHHHHHHHHHHhccCCCCCch
Q 002975 644 EALEFIRS--MP-LSADVLVWRT-FLGAC--RVHGDTELGKHAAEMILEQDPQDPAA 694 (861)
Q Consensus 644 eA~~~~~~--~~-~~p~~~~~~~-ll~~~--~~~g~~~~a~~~~~~~~~~~p~~~~~ 694 (861)
+ ++|.. .| ..-.+.-|.. |+.+. ...|+.+.|...-+++++.-|..++.
T Consensus 82 ~--~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~ 136 (273)
T 1zbp_A 82 K--DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 136 (273)
T ss_dssp H--HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred H--HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCC
Confidence 1 11211 11 1112223544 55554 45689999999988888888876554
No 258
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=75.80 E-value=38 Score=29.09 Aligned_cols=77 Identities=10% Similarity=0.087 Sum_probs=50.8
Q ss_pred CCChHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 002975 587 KPNGITYIAVLSACSHAGL---ISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRT 663 (861)
Q Consensus 587 ~p~~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ 663 (861)
.|+..|-..+..++.++.. +.+|+.+++.+... .|. -.-...--
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~---~~~------------------------------~~RdcLYy 82 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AES------------------------------RRRECLYY 82 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CCS------------------------------THHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---Ccc------------------------------chhHHHHH
Confidence 4566665557777777665 44566666665521 111 01123334
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhccCCCCCchHH
Q 002975 664 FLGACRVHGDTELGKHAAEMILEQDPQDPAAHI 696 (861)
Q Consensus 664 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 696 (861)
|.-++.+.|+++.|.+..+.+++.+|+|..+..
T Consensus 83 LAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 83 LTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 666789999999999999999999998854443
No 259
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=74.95 E-value=1.3e+02 Score=35.00 Aligned_cols=258 Identities=10% Similarity=0.019 Sum_probs=123.4
Q ss_pred HhcccCChHHHHHHHHHHHHcCCCCC--cchhhHHHHHHHHcCCHHHHHHHHHhcCC-CC----------eehHHHHHHH
Q 002975 397 ACGNLLDSNVAEQVYTHAVKRGRALD--DCVGNSLISMYARSGRMEDARKAFESLFE-KN----------LVSYNTMVDA 463 (861)
Q Consensus 397 a~~~~~~~~~a~~i~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~----------~~~~~~li~~ 463 (861)
+....|+.+++..++...+..+-..+ ......+.-+...+|.-+++..++..... .+ +..-.+|.-|
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34556777777666654433110111 12223333444555655566665554321 11 1112223233
Q ss_pred HHhcCC-hhHHHHHHHHHhhcCCCCCHHH--HH--HHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHH--HHc
Q 002975 464 YAKNLN-SEKAFELLHEIEDTGVGTSAYT--FA--SLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISM--YSR 536 (861)
Q Consensus 464 ~~~~g~-~~~A~~l~~~m~~~g~~p~~~t--~~--~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--y~~ 536 (861)
++-.|. -+++.+.+..+.... +..+ .. ++...+...|+.+....++..+.... +..+...+.-+ +.-
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 333342 245666666665432 2111 11 22333445677777777777766532 22333333333 335
Q ss_pred cCCHHHHHHHHHhccC-CCch-HHH---HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 002975 537 CANVEAAFQVFKEMED-RNVI-SWT---SMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWK 611 (861)
Q Consensus 537 ~g~~~~A~~~~~~~~~-~~~~-~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 611 (861)
.|+.+.+..+.+.+.. .|.. -|. ++.-+|+..|+.....++++.+.+.. ..+......+.-++...|..+.+.+
T Consensus 537 ~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 537 YGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 6777777777666552 3332 232 23445667777665555777777631 2222222333334444555555556
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHhhhcCC-HHHHHHHHHhCCCCCCHHHHHH
Q 002975 612 HFRSMYDEHGIVQRMEHYACMVDLLGRSGS-LTEALEFIRSMPLSADVLVWRT 663 (861)
Q Consensus 612 ~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~-~~eA~~~~~~~~~~p~~~~~~~ 663 (861)
+++.+. .+ ..|.+..-.++.-....+|. ..+|.+.+..+...+|..+-..
T Consensus 616 lv~~L~-~~-~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~ 666 (963)
T 4ady_A 616 IVQLLS-KS-HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQA 666 (963)
T ss_dssp HTTTGG-GC-SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHH-hc-CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHH
Confidence 665444 22 23444433334333333443 2567777777765566554433
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=74.05 E-value=77 Score=31.83 Aligned_cols=165 Identities=13% Similarity=0.075 Sum_probs=95.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHH----HHHhhcCCCCCHHHHHHHHHHhhccc
Q 002975 428 SLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELL----HEIEDTGVGTSAYTFASLLSGASSIG 503 (861)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~a~~~~~ 503 (861)
++..=|.+.+++++|.+++..- ...+.+.|+...|-++- +-..+.++++|..+...++..+....
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 3445577888888888876442 34455666665554443 44455678888888777777766554
Q ss_pred chH-HHHHHHHHHH----HhC--CCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHH
Q 002975 504 AIG-KGEQIHARII----KSG--FESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALE 576 (861)
Q Consensus 504 ~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 576 (861)
.-+ .-..+.+.++ +.| -.-|+.....+...|.+.+++.+|+.-|---.++.+..+..|+.-+...+...
T Consensus 109 ~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~---- 184 (336)
T 3lpz_A 109 PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH---- 184 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG----
T ss_pred CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc----
Confidence 321 1123333333 223 23467778888999999999999988884222222355554444333333211
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002975 577 IFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYD 618 (861)
Q Consensus 577 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 618 (861)
.+|...-.+++. |.-.+++..|..+|+...+
T Consensus 185 ----------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 ----------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ----------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred ----------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 122222233333 4456788888887766653
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=72.52 E-value=26 Score=27.80 Aligned_cols=61 Identities=13% Similarity=0.078 Sum_probs=44.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHH
Q 002975 429 LISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTF 492 (861)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 492 (861)
-+..+...|++++|..+.+.+.-||+..|-+|-. .+.|..+++..-+.++..+| .|....|
T Consensus 46 R~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 46 RLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3445677899999999999999899998877754 45677777777777777665 3333333
No 262
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=71.77 E-value=18 Score=30.59 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 002975 573 RALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVD 634 (861)
Q Consensus 573 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 634 (861)
+...-++.+....+.|++....+.+.||.+.+++.-|.++|+.++.+.|-. ...|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~--~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc--hhhHHHHHH
Confidence 455556777777889999999999999999999999999999987655443 556766643
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=70.74 E-value=24 Score=27.91 Aligned_cols=61 Identities=15% Similarity=0.030 Sum_probs=44.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHH
Q 002975 429 LISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTF 492 (861)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 492 (861)
-+..+...|++++|..+.+.+.-||+..|-+|-. .+.|..+++..-+.++..+| .|....|
T Consensus 45 R~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 45 RISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3445677899999999999999899998877754 46787888877777777665 3443333
No 264
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=70.51 E-value=92 Score=31.25 Aligned_cols=142 Identities=12% Similarity=0.053 Sum_probs=87.5
Q ss_pred HHHcCCH---HHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHH--
Q 002975 433 YARSGRM---EDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGK-- 507 (861)
Q Consensus 433 ~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~-- 507 (861)
-...|++ =+|.+. |.++..-|.+.+++++|++++..-.. .+.+.|+...
T Consensus 22 ~I~~G~y~~~YEAHQ~-----------~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~ 75 (336)
T 3lpz_A 22 RIAEGQPEEQYEAAQE-----------TRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGG 75 (336)
T ss_dssp HHHHCCHHHHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHH
T ss_pred HHhCCCCccccHHHHH-----------HHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHH
Confidence 3456777 566654 45567889999999999998765321 2233344443
Q ss_pred --HHHHHHHHHHhCCCCchhHHHHHHHHHHccCCH--------HHHHHHHHhc---cCCCchHHHHHHHHHHhcCChHHH
Q 002975 508 --GEQIHARIIKSGFESNHCIYNALISMYSRCANV--------EAAFQVFKEM---EDRNVISWTSMITGFAKHGFAARA 574 (861)
Q Consensus 508 --a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~--------~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A 574 (861)
+.-+.+-..+.++++|......|+..+.....- ++|.+.=..- ..-|......+...|.+.+++.+|
T Consensus 76 DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~A 155 (336)
T 3lpz_A 76 DLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAA 155 (336)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 344455666778888888888888888776542 2222222211 123555666777888888888888
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Q 002975 575 LEIFYKMLADGIKPNGITYIAVLSACSHAG 604 (861)
Q Consensus 575 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 604 (861)
...| + .|-.+...+|..++..+...+
T Consensus 156 e~H~--i--lg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 156 EKHL--V--LGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp HHHH--T--TSCTTHHHHHHHHHHHHHHTS
T ss_pred HHHH--H--hcCCchHHHHHHHHHHHHHhc
Confidence 8776 2 233444466766665554443
No 265
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=70.37 E-value=32 Score=29.10 Aligned_cols=55 Identities=13% Similarity=0.154 Sum_probs=42.1
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHH
Q 002975 644 EALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILL 698 (861)
Q Consensus 644 eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 698 (861)
.++.-+-.+..-|++.+..+-+.+|++.+|+..|.+++|-+...-.+...+|-.+
T Consensus 74 rglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~ 128 (152)
T 2y69_E 74 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 128 (152)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 3333344456889999999999999999999999999999887654445556554
No 266
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=69.73 E-value=24 Score=30.68 Aligned_cols=52 Identities=13% Similarity=0.136 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 002975 538 ANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN 589 (861)
Q Consensus 538 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 589 (861)
+++++|.++|+.+.+ .-...|-....--.++|+...|.+++.+.+..+.+|.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 566666666665531 1234455555555667777777777777777554443
No 267
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=69.36 E-value=57 Score=28.36 Aligned_cols=55 Identities=15% Similarity=0.147 Sum_probs=36.4
Q ss_pred CChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCc
Q 002975 468 LNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESN 523 (861)
Q Consensus 468 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~ 523 (861)
++.++|.++|+.+...+-+- ...+.....--.+.|++..|+++++..+..+..|.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 56777777777776543222 44555555555678888888888888888775443
No 268
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=64.26 E-value=1e+02 Score=29.51 Aligned_cols=88 Identities=10% Similarity=0.032 Sum_probs=42.9
Q ss_pred HHHHHHHhcCCcchhHHHHHHHHHcCCCCCcc---hHHHHHHHHhcCCChHHHHHHHHhcCC--CCCceeHHHHHHHHHh
Q 002975 83 LLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSV---ILNSLISLYSKCGDLNEANKIFKSMGN--KRDIVSWSSMISSYVN 157 (861)
Q Consensus 83 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~ 157 (861)
+.|..+++.|+.+..+.+ ++.|..++.. ...+.+...+..|+.+-+..+++.-.. .+|..-++.|..+ +.
T Consensus 7 ~~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~ 81 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQL----LEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLA-AI 81 (285)
T ss_dssp HHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH-HH
T ss_pred hHHHHHHHcCCHHHHHHH----HHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH-HH
Confidence 445555666776544444 5556554432 223455555667777666666654211 1222333333333 33
Q ss_pred cCChhHHHHHHHHHHHcCCCCC
Q 002975 158 RGKQVDAIHMFVEMLELGFCPN 179 (861)
Q Consensus 158 ~g~~~~A~~~~~~m~~~g~~p~ 179 (861)
.|+. ++++.+.+.|..++
T Consensus 82 ~~~~----~~v~~Ll~~g~~~~ 99 (285)
T 1wdy_A 82 AGSV----KLLKLFLSKGADVN 99 (285)
T ss_dssp HTCH----HHHHHHHHTTCCTT
T ss_pred cCCH----HHHHHHHHcCCCCC
Confidence 4443 34444555565554
No 269
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=60.95 E-value=82 Score=38.23 Aligned_cols=62 Identities=5% Similarity=-0.116 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCc-----hHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 002975 661 WRTFLGACRVHGDTELGKHAAEMILEQDPQDPA-----AHILLSNLYASAGHWEYVANIRKRMKERN 722 (861)
Q Consensus 661 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~L~~~y~~~g~~~~a~~~~~~m~~~~ 722 (861)
|..++..+.++|-++.+.+.++.+++..+.+.. .|..+-+.+.+.|+|++|-.....+....
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 444555555666666666666666654332221 23344455566666666666555554433
No 270
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=59.95 E-value=1.2e+02 Score=28.94 Aligned_cols=119 Identities=13% Similarity=0.124 Sum_probs=61.7
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhCCCCCChh---hHHHHHHHHHhcCCcchhHHHHHHHHHcCCCCCcc--hHHHHHHHH
Q 002975 49 RLIYHLNDGRVQKAIFTLDLMTQKGNHPDLD---TYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSV--ILNSLISLY 123 (861)
Q Consensus 49 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~ 123 (861)
.+...++.|+.+.... +.+.|..++.. .-.+.|...+..|+.+. ...+++.|..++.. ...+.+...
T Consensus 8 ~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A 79 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQ----LLEGGANVNFQEEEGGWTPLHNAVQMSREDI----VELLLRHGADPVLRKKNGATPFLLA 79 (285)
T ss_dssp HHHHHHHTTCHHHHHH----HHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred HHHHHHHcCCHHHHHH----HHHcCCCcccccCCCCCcHHHHHHHcCCHHH----HHHHHHcCCCCcccCCCCCCHHHHH
Confidence 4446677888765444 44555444322 11244555566676644 44446667665432 223445555
Q ss_pred hcCCChHHHHHHHHhcCC--CCCceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 002975 124 SKCGDLNEANKIFKSMGN--KRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNE 180 (861)
Q Consensus 124 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 180 (861)
+..|+.+-+..+++.-.. .+|..-++.|..+ +..|+. ++++.+.+.|..++.
T Consensus 80 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~~----~~~~~Ll~~g~~~~~ 133 (285)
T 1wdy_A 80 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEA-AVYGKV----KALKFLYKRGANVNL 133 (285)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHH-HHTTCH----HHHHHHHHTTCCTTC
T ss_pred HHcCCHHHHHHHHHcCCCCCccCcccCCHHHHH-HHhCCH----HHHHHHHHhCCCccc
Confidence 677887777766664321 1233334444443 445553 345555566665543
No 271
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=58.82 E-value=16 Score=35.21 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=36.0
Q ss_pred HhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Q 002975 635 LLGRSGSLTEALEFIRSM-PLSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD 691 (861)
Q Consensus 635 ~~~r~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 691 (861)
-+.+.|.+++|++.+..- ...| |...-..|...++..|+.+.|..-++.+.+++|+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 455677777776655443 2333 55555566667777777777777777777777754
No 272
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=58.60 E-value=1.1e+02 Score=27.78 Aligned_cols=60 Identities=13% Similarity=0.084 Sum_probs=23.3
Q ss_pred CchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002975 522 SNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKML 582 (861)
Q Consensus 522 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 582 (861)
++..+-...+.++.+.+..+....+.+.+.+++...-...+.++...|. .+++..+.++.
T Consensus 119 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 119 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA 178 (201)
T ss_dssp SSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 3444444444444444443222222222333343333344444444443 33444444443
No 273
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=56.68 E-value=1.6e+02 Score=29.23 Aligned_cols=141 Identities=13% Similarity=0.125 Sum_probs=83.6
Q ss_pred HHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHH--
Q 002975 433 YARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQ-- 510 (861)
Q Consensus 433 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~-- 510 (861)
-...|++=+|.+. |.++..-|.+.+++++|++++..-.. .+.+.|+...|-+
T Consensus 23 ~I~~G~yYEAhQ~-----------~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa 76 (312)
T 2wpv_A 23 KIKAGDYYEAHQT-----------LRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLI 76 (312)
T ss_dssp HHHHTCHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHH
T ss_pred HhhccChHHHHHH-----------HHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHH
Confidence 3445677777665 45578889999999999998766431 2233344444443
Q ss_pred --HHHHHHHhCCCCchhHHHHHHHHHHccCC--------HHHHHHHHHhcc---CCCchHHHHHHHHHHhcCChHHHHHH
Q 002975 511 --IHARIIKSGFESNHCIYNALISMYSRCAN--------VEAAFQVFKEME---DRNVISWTSMITGFAKHGFAARALEI 577 (861)
Q Consensus 511 --~~~~~~~~~~~~~~~~~~~li~~y~~~g~--------~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 577 (861)
+.+-..+.+.+++......|++.+..... +++|.+.-.+.. .-|+.....+...|.+.|++.+|...
T Consensus 77 ~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H 156 (312)
T 2wpv_A 77 FYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERY 156 (312)
T ss_dssp HHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Confidence 45555667888888888888877766432 222333322221 13556666777777777777777765
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHhc
Q 002975 578 FYKMLADGIKPNGITYIAVLSACSHA 603 (861)
Q Consensus 578 ~~~m~~~g~~p~~~t~~~ll~a~~~~ 603 (861)
|- .|-.-|...+..++.-+...
T Consensus 157 ~i----~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 157 FM----LGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp HH----TSCHHHHHHHHHHHHHHHHH
T ss_pred HH----hCCCccHHHHHHHHHHHHHh
Confidence 52 12111344555555555444
No 274
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=54.58 E-value=1.1e+02 Score=28.27 Aligned_cols=9 Identities=11% Similarity=-0.137 Sum_probs=4.0
Q ss_pred HHHHHHHHh
Q 002975 337 VDDSRKVFD 345 (861)
Q Consensus 337 ~~~A~~~~~ 345 (861)
.+-+..+++
T Consensus 223 ~~~v~~L~~ 231 (240)
T 3eu9_A 223 VWMINHLQE 231 (240)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 275
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=52.95 E-value=75 Score=31.02 Aligned_cols=183 Identities=12% Similarity=0.025 Sum_probs=82.1
Q ss_pred HHHHHhcCCcchhHHHHHHHHHcCCCCCcchHHHHHHHHhcCCChHHHHHHHHhcCC--CCCceeHHHHHHHHHhcCChh
Q 002975 85 LKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGDLNEANKIFKSMGN--KRDIVSWSSMISSYVNRGKQV 162 (861)
Q Consensus 85 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~ 162 (861)
|..++..|+.+.+..+ ++.|..++..-..+.+...+..|+.+-+..+++.-.. .+|..-++.|..+ +..|+.+
T Consensus 35 L~~A~~~g~~~~v~~L----l~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A-~~~g~~~ 109 (285)
T 3kea_A 35 SYYAIADNNVRLVCTL----LNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYA-VDSGNMQ 109 (285)
T ss_dssp HHHHHHTTCHHHHHHH----HHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHTTCHH
T ss_pred HHHHHHcCCHHHHHHH----HhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHH-HHcCCHH
Confidence 4444556666554444 5556555544445566666777887777777664211 1233334444433 4455544
Q ss_pred HHHHHHHHHHHcCCCCCccc---HHHHHHHhcCCcchhhhhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHH
Q 002975 163 DAIHMFVEMLELGFCPNEYC---FSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKV 239 (861)
Q Consensus 163 ~A~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~ 239 (861)
+++.+.+.|..++... +.+.+...+..|+.+.+ +.+++.|....+.......+...+. .|..+-+..+
T Consensus 110 ----~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~-~g~~~~v~~L 180 (285)
T 3kea_A 110 ----TVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIK-NGHVDMMILL 180 (285)
T ss_dssp ----HHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHH-TTCHHHHHHH
T ss_pred ----HHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHH-cChHHHHHHH
Confidence 3333344455544322 12334444444544333 3333334112222122333334444 5666555555
Q ss_pred HhcCCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCccc
Q 002975 240 FDKMTE---KNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFT 285 (861)
Q Consensus 240 f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 285 (861)
++.-.. +|..-++..+...++.|+ .++.+.+.+.|..|+...
T Consensus 181 l~~gad~n~~~~~g~t~~L~~A~~~~~----~~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 181 LDYMTSTNTNNSLLFIPDIKLAIDNKD----IEMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHTCTTCCCBCCTTHHHHHHHTC----HHHHHHHTTSCBCSTTTT
T ss_pred HHcCCCCCcccCCCCChHHHHHHHcCC----HHHHHHHHHcCCCCCCCC
Confidence 543211 222222322222333333 234444555566555543
No 276
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=52.74 E-value=1.4e+02 Score=27.27 Aligned_cols=61 Identities=13% Similarity=0.083 Sum_probs=25.2
Q ss_pred CchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002975 522 SNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLA 583 (861)
Q Consensus 522 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 583 (861)
++..+-...+.++.+.|..+....+.+.+.++|...-...+.++.+.+. .+++..+.++.+
T Consensus 124 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 3444444444444444443322222233333444444444444444443 334444444443
No 277
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=50.87 E-value=2.9e+02 Score=30.53 Aligned_cols=225 Identities=12% Similarity=-0.023 Sum_probs=119.8
Q ss_pred ChhHHHHHHHHHhhcCCCCCHHHH----HHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHH
Q 002975 469 NSEKAFELLHEIEDTGVGTSAYTF----ASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAF 544 (861)
Q Consensus 469 ~~~~A~~l~~~m~~~g~~p~~~t~----~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 544 (861)
+.+.|..+|....... ..+.... ..+.......+...++...+....... .+.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 6788888888876543 2233322 222333344443445555555544433 23333334444455679999999
Q ss_pred HHHHhccCCC--chHH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 002975 545 QVFKEMEDRN--VISW-TSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHG 621 (861)
Q Consensus 545 ~~~~~~~~~~--~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 621 (861)
..|+.|.... ..-| -=+..++...|+.++|..+|+++.+. .+|..++.+ .+.|..-. .. ...
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~------~~fYg~lAa-~~Lg~~~~-------~~-~~~ 370 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ------RGFYPMVAA-QRIGEEYE-------LK-IDK 370 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------CSHHHHHHH-HHTTCCCC-------CC-CCC
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC------CChHHHHHH-HHcCCCCC-------CC-CCC
Confidence 9999887532 1111 22445667789999999999888652 145544432 23332000 00 000
Q ss_pred CCCC-hh-----HHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCC---CCC
Q 002975 622 IVQR-ME-----HYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDP---QDP 692 (861)
Q Consensus 622 ~~p~-~~-----~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p---~~~ 692 (861)
..+. .. --..-+..+.+.|...+|...+.......+..-...+.......|..+.++....+....+. .-+
T Consensus 371 ~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P 450 (618)
T 1qsa_A 371 APQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFP 450 (618)
T ss_dssp CCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSC
T ss_pred CChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCC
Confidence 1110 00 11123456778899999988777653334444444555556778888888877655433221 113
Q ss_pred chHHHHHHHHHHcCChhHH
Q 002975 693 AAHILLSNLYASAGHWEYV 711 (861)
Q Consensus 693 ~~~~~L~~~y~~~g~~~~a 711 (861)
..|..+..-+++.-..+..
T Consensus 451 ~~y~~~i~~~a~~~gv~~~ 469 (618)
T 1qsa_A 451 LAYNDLFKRYTSGKEIPQS 469 (618)
T ss_dssp CTTHHHHHHHHTTSSSCHH
T ss_pred cchHHHHHHHHHHcCCCHH
Confidence 3455555555554444443
No 278
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=50.40 E-value=1.5e+02 Score=27.00 Aligned_cols=81 Identities=15% Similarity=0.169 Sum_probs=39.2
Q ss_pred CCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 002975 521 ESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSAC 600 (861)
Q Consensus 521 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 600 (861)
.++..+-...+.++.+.|+.+....+.+.+.++|...-...+.++...|.. +++..+.++.+ .+|...-...+.++
T Consensus 92 ~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL 167 (211)
T 3ltm_A 92 DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADAL 167 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 345555555555566555544333344444455555555555555555543 33444444432 34444444444555
Q ss_pred HhcCC
Q 002975 601 SHAGL 605 (861)
Q Consensus 601 ~~~g~ 605 (861)
...+.
T Consensus 168 ~~~~~ 172 (211)
T 3ltm_A 168 GEIGG 172 (211)
T ss_dssp HHHCS
T ss_pred HHhCc
Confidence 55444
No 279
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.22 E-value=53 Score=34.65 Aligned_cols=57 Identities=7% Similarity=-0.101 Sum_probs=33.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhccC------CCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002975 526 IYNALISMYSRCANVEAAFQVFKEMED------RNVISWTSMITGFAKHGFAARALEIFYKML 582 (861)
Q Consensus 526 ~~~~li~~y~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 582 (861)
+...+.+.|.++|+++.|.+.|.++.. .-+..|-.+|..+...+++..+...+++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 445566666667777666666666552 112344555566666666666666666554
No 280
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.50 E-value=54 Score=34.60 Aligned_cols=61 Identities=7% Similarity=0.015 Sum_probs=42.2
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHccCCHHHHHHHHHhcc
Q 002975 491 TFASLLSGASSIGAIGKGEQIHARIIKS--GFESNHCIYNALISMYSRCANVEAAFQVFKEME 551 (861)
Q Consensus 491 t~~~ll~a~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 551 (861)
+...+...+.+.|+++.|.+++..+... +...-..++-.++.++...+++..+...++++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4456677777888888888888877654 223345566677777777888887777776653
No 281
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=47.62 E-value=1.7e+02 Score=26.81 Aligned_cols=101 Identities=12% Similarity=0.150 Sum_probs=67.4
Q ss_pred HHHHHHHhCC-CCCCHH---HHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCchHHHHHHHHHHcCChhHHHHHHHH
Q 002975 644 EALEFIRSMP-LSADVL---VWRTFLGACRVHGDTELGKHAAEMILE--QDPQDPAAHILLSNLYASAGHWEYVANIRKR 717 (861)
Q Consensus 644 eA~~~~~~~~-~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~ 717 (861)
.+...|...+ .+-|+. +|-.++..| ..++......+++.+.. +.-.-+..|...+..+...|+|.+|.++++.
T Consensus 62 rc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 62 RCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp HHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444332 334543 554444444 24456678888888775 5666788899999999999999999999997
Q ss_pred HHhCCCccCCceeEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCc
Q 002975 718 MKERNLIKEAGCSWIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKEFGY 770 (861)
Q Consensus 718 m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~ 770 (861)
-.+++-++ ...+.....+...+|...+.
T Consensus 141 GI~~~A~P-------------------------~~rL~~~~~~F~~R~~~~~~ 168 (202)
T 3esl_A 141 GAENNCRP-------------------------YNRLLRSLSNYEDRLREMNI 168 (202)
T ss_dssp HHHTTCBS-------------------------HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHcCCcc-------------------------HHHHHHHHHHHHHHHHhcCC
Confidence 77655432 24455566667777777766
No 282
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=45.83 E-value=1.4e+02 Score=27.67 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=11.1
Q ss_pred HHhhcCChhHHHHHHHHHHhCCC
Q 002975 52 YHLNDGRVQKAIFTLDLMTQKGN 74 (861)
Q Consensus 52 ~~~~~~~~~~a~~~~~~~~~~~~ 74 (861)
..+..|+.+....+++.+.+.|.
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~ 37 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGR 37 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCC
Confidence 44455555555555444444443
No 283
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=44.85 E-value=1.7e+02 Score=26.23 Aligned_cols=152 Identities=16% Similarity=0.085 Sum_probs=69.8
Q ss_pred chhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 002975 523 NHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSH 602 (861)
Q Consensus 523 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 602 (861)
+..+-...+..+.+.|..+....+.+.+.++|...-...+.++...|.. ++...+.++.. .++...-...+.++..
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQ 102 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 3344444444444444433333344444445544444455555555543 33333444433 3454444455555555
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 002975 603 AGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAE 682 (861)
Q Consensus 603 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 682 (861)
.|..+ +...+..+. -.++...-...+.++++.|.- ++...+..+...++..+-...+.+....|+.+ +...+.
T Consensus 103 ~~~~~-~~~~L~~~l----~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~-~~~~L~ 175 (201)
T 3ltj_A 103 IGDER-AVEPLIKAL----KDEDWFVRIAAAFALGEIGDE-RAVEPLIKALKDEDGWVRQSAADALGEIGGER-VRAAME 175 (201)
T ss_dssp HCCGG-GHHHHHHHT----TCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTTCSSHHHHHHHHHHHHHHCSHH-HHHHHH
T ss_pred hCcHH-HHHHHHHHH----cCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhCchh-HHHHHH
Confidence 55432 223222222 134444444555566665553 33344444334556666666666666666533 333333
Q ss_pred HHh
Q 002975 683 MIL 685 (861)
Q Consensus 683 ~~~ 685 (861)
.++
T Consensus 176 ~~l 178 (201)
T 3ltj_A 176 KLA 178 (201)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 284
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=43.95 E-value=7.8 Score=24.48 Aligned_cols=19 Identities=26% Similarity=0.628 Sum_probs=13.7
Q ss_pred ecCCccccc-cCCccCCCCC
Q 002975 842 RDSNRFHHI-KDGKCSCNDY 860 (861)
Q Consensus 842 ~~~~~~h~~-~~g~~~c~~~ 860 (861)
..|-.-|.. ++|.||||-|
T Consensus 10 e~CPkPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 10 EACPLPHRLNSLGGCRCGKY 29 (42)
T ss_dssp SSCCTTSCCCTTSSBTTTTB
T ss_pred CCCCCCceecCCceeccccc
Confidence 345555666 5999999976
No 285
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=41.06 E-value=2.2e+02 Score=26.27 Aligned_cols=188 Identities=12% Similarity=-0.009 Sum_probs=94.4
Q ss_pred HHHHHHhcCCcchhHHHHHHHHHcCCCCCcch--HHHHHHHHhcCCChHHHHHHHHhcCC--CCCceeHHHHHHHHHhcC
Q 002975 84 LLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVI--LNSLISLYSKCGDLNEANKIFKSMGN--KRDIVSWSSMISSYVNRG 159 (861)
Q Consensus 84 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g 159 (861)
.|..++..|+.+....+++...+.|..++... ..+.+...+..|+.+-+..+++.-.. .+|..-++.|.. .+..|
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~-A~~~~ 90 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHL-ACEHR 90 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH-HHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHH-HHHcC
Confidence 34555667888888888777777776554332 23455566678888777666654321 123333344433 34566
Q ss_pred ChhHHHHHHHHHHHcCCCCC---cccHHHHHHHhcCCcchhhhhhhhhhhhhccCCCCch---hHHHHHHHHhhhCCCCH
Q 002975 160 KQVDAIHMFVEMLELGFCPN---EYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDV---CVGCALIDMFVKGSVDL 233 (861)
Q Consensus 160 ~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~~l~~~~~~~~g~~ 233 (861)
+.+-+..+++.....++.++ ....+.+.. .+..|+.+. .+.+++.| ...+. ......+...++ .|+.
T Consensus 91 ~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~-A~~~~~~~~----~~~Ll~~g-~~~~~~~~~~g~t~L~~A~~-~~~~ 163 (241)
T 1k1a_A 91 SPTCLRALLDSAAPGTLDLEARNYDGLTALHV-AVNTECQET----VQLLLERG-ADIDAVDIKSGRSPLIHAVE-NNSL 163 (241)
T ss_dssp CHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHH-HHHHTCHHH----HHHHHHTT-CCTTCCCTTTCCCHHHHHHH-TTCH
T ss_pred CHHHHHHHHHcCCCccccccccCcCCCcHHHH-HHHcCCHHH----HHHHHHcC-CCcccccccCCCcHHHHHHH-cCCH
Confidence 66544444433221112222 222233333 334454443 34444444 22221 223344445555 7888
Q ss_pred HHHHHHHhcCCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcc
Q 002975 234 ESAYKVFDKMTEK---NTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRF 284 (861)
Q Consensus 234 ~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 284 (861)
+-+..+++.-... |..-++.| ...++.|+.+ +++.+.+.|..++..
T Consensus 164 ~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~ga~~~~~ 212 (241)
T 1k1a_A 164 SMVQLLLQHGANVNAQMYSGSSAL-HSASGRGLLP----LVRTLVRSGADSSLK 212 (241)
T ss_dssp HHHHHHHHTTCCTTCBCTTSCBHH-HHHHHHTCHH----HHHHHHHTTCCTTCC
T ss_pred HHHHHHHHcCCCCCCcCCCCCCHH-HHHHHcCCHH----HHHHHHhcCCCCCCc
Confidence 8887777764443 22223333 3344556543 455556677666543
No 286
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=40.20 E-value=1.4e+02 Score=28.21 Aligned_cols=55 Identities=11% Similarity=-0.097 Sum_probs=32.3
Q ss_pred HHHHHhcCCchHHHHHHHHHHHCCCCCCccc-------HHHHHHHHh--ccCCchHHHHHHHHH
Q 002975 255 ITRCTQLGCPRDAIRLFLDMILSGFLPDRFT-------LSGVVSACS--ELELFTSGKQLHSWA 309 (861)
Q Consensus 255 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-------~~~ll~a~~--~~~~~~~a~~i~~~~ 309 (861)
+...++.|+.+....+++.+.+.|..++... .+.+..|+. +.|+.+-++.+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3345567777777777777776666555332 234444432 557777666666554
No 287
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=40.07 E-value=1.9e+02 Score=29.32 Aligned_cols=217 Identities=13% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHhccCCC---CcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 002975 321 GCSLVDMYAKCTVDGSVDDSRKVFDRMLDH---NVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKA 397 (861)
Q Consensus 321 ~~~li~~y~~~g~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 397 (861)
..++|.-|...++ .++|...++++..+ ..+.-..+..++-+....-+.+-.++..+. .++-+.......+...
T Consensus 57 ~~~ii~EYf~~~d---~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~-~~~ls~~~i~~gf~~l 132 (358)
T 3eiq_C 57 LTPIIQEYFEHGD---TNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTNDVEKSFDKL 132 (358)
T ss_dssp HHHHHHHHHHHCC---HHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT-TTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC---HHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHH
Q ss_pred hcccCC--------hHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCC--HHHHHHHHHhcCCCCee------------
Q 002975 398 CGNLLD--------SNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGR--MEDARKAFESLFEKNLV------------ 455 (861)
Q Consensus 398 ~~~~~~--------~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~------------ 455 (861)
+....+ ++..-.++..++..++-|-..+.......-+..|. ++.|..++..-......
T Consensus 133 le~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~~~~~ 212 (358)
T 3eiq_C 133 LKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQP 212 (358)
T ss_dssp HHTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC---CCHHHHHHHHHHHHHHTC---------CCCCCCSSSC
T ss_pred HHhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcccchHHHHHHHHHHHHHhccchHHHHHHhcCCCCCCcc
Q ss_pred ------hHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhc-ccchHHHHHHHHHHHHhCCCCchhHHH
Q 002975 456 ------SYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASS-IGAIGKGEQIHARIIKSGFESNHCIYN 528 (861)
Q Consensus 456 ------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~ 528 (861)
..+.++.=|...|+.+||.+.++++..-...+..+.....+..-.+ ....+...+++..+.+.|+-+......
T Consensus 213 veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~ 292 (358)
T 3eiq_C 213 VNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKR 292 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_pred HHHHHHHccCCHH
Q 002975 529 ALISMYSRCANVE 541 (861)
Q Consensus 529 ~li~~y~~~g~~~ 541 (861)
.+...+....++.
T Consensus 293 Gf~~vl~~ldDl~ 305 (358)
T 3eiq_C 293 GYERIYNEIPDIN 305 (358)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhccHhh
No 288
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=39.53 E-value=1.3e+02 Score=28.52 Aligned_cols=51 Identities=12% Similarity=0.006 Sum_probs=27.0
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCcc-------cHHHHHHHhc--CCcchhhhhhhhhh
Q 002975 155 YVNRGKQVDAIHMFVEMLELGFCPNEY-------CFSAVIRACS--NTENVAIGHIIYGF 205 (861)
Q Consensus 155 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~~~~--~~~~~~~a~~~~~~ 205 (861)
.++.|+.+....+++.+.+.|..++.. -.+.+..++. +.|+.+.++.+++.
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 345666766666666666666555533 2233443332 44555555555544
No 289
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=37.90 E-value=12 Score=23.86 Aligned_cols=13 Identities=31% Similarity=0.843 Sum_probs=10.6
Q ss_pred cccccCCcchhhh
Q 002975 817 NLRVCGDCHTAIK 829 (861)
Q Consensus 817 nl~~c~~~h~~~~ 829 (861)
|-|+|.+||.-+-
T Consensus 16 ~YRvC~~CgkPi~ 28 (44)
T 2lo3_A 16 QYRVCEKCGKPLA 28 (44)
T ss_dssp CEEECTTTCCEEE
T ss_pred cchhhcccCCcch
Confidence 8899999996543
No 290
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=37.55 E-value=1.3e+02 Score=29.89 Aligned_cols=64 Identities=14% Similarity=0.129 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhccc--chHHHHHHHHHHHHhCCC
Q 002975 457 YNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIG--AIGKGEQIHARIIKSGFE 521 (861)
Q Consensus 457 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~~ 521 (861)
.+.++.=|...|+.+||.+.++++..-... ..+....+..+.-+.+ ..+....++..+.+.|+-
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 355666777777777777777777522111 1223333344444322 234444555555555543
No 291
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=37.52 E-value=2.2e+02 Score=28.56 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=8.4
Q ss_pred HHHhcCCChHHHHHHHHh
Q 002975 121 SLYSKCGDLNEANKIFKS 138 (861)
Q Consensus 121 ~~~~~~g~~~~A~~~~~~ 138 (861)
...+..|+.+-+..+++.
T Consensus 58 ~~A~~~g~~~~v~~Ll~~ 75 (364)
T 3ljn_A 58 HLACKFGCVDTAKYLASV 75 (364)
T ss_dssp HHHHHHCCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHC
Confidence 333444555544444444
No 292
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=36.91 E-value=2.3e+02 Score=25.24 Aligned_cols=16 Identities=13% Similarity=0.281 Sum_probs=9.4
Q ss_pred hcCCChHHHHHHHHhc
Q 002975 124 SKCGDLNEANKIFKSM 139 (861)
Q Consensus 124 ~~~g~~~~A~~~~~~~ 139 (861)
+..|+.+....+++.-
T Consensus 13 ~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 13 ANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHTTCHHHHHHHHTCT
T ss_pred HHhccHHHHHHHHHcC
Confidence 4556666666666544
No 293
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=36.64 E-value=1.8e+02 Score=25.25 Aligned_cols=48 Identities=8% Similarity=0.043 Sum_probs=37.8
Q ss_pred HHHHHHHHhc--cCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 002975 677 GKHAAEMILE--QDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLI 724 (861)
Q Consensus 677 a~~~~~~~~~--~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~ 724 (861)
...+++.+.. +.-.-+..|...+..+...|++.+|.++++.-.+++-+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 6677777765 45667778889999999999999999999977765443
No 294
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=35.96 E-value=13 Score=26.92 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=17.7
Q ss_pred ceEEeecCCccccccCCccCC
Q 002975 837 REIVLRDSNRFHHIKDGKCSC 857 (861)
Q Consensus 837 ~~~~~~~~~~~h~~~~g~~~c 857 (861)
..|-+.|....|+|+||+-+-
T Consensus 8 k~v~LkDGstvyiFKDGKMam 28 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGM 28 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEE
T ss_pred eeEecCCCcEEEEEcCCceeh
Confidence 457899999999999998653
No 295
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=34.76 E-value=1.7e+02 Score=25.26 Aligned_cols=121 Identities=15% Similarity=0.151 Sum_probs=58.5
Q ss_pred hHHHHHHHhhcCChhHHHHHHHHHHhCCCCCChh--hHHHHHHHHHhcCCcchhHHHHHHHHHcCCCCCcch--HHHHHH
Q 002975 46 LSNRLIYHLNDGRVQKAIFTLDLMTQKGNHPDLD--TYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVI--LNSLIS 121 (861)
Q Consensus 46 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~ 121 (861)
..+.+...++.|+.+....+++ .|..++.. .-.+.|..++..|+.+.. ..+++.|..++... ..+.+.
T Consensus 14 ~~~~l~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~ 85 (169)
T 2y1l_E 14 LGKKLLEAARAGRDDEVRILMA----NGADVNAEDASGWTPLHLAAFNGHLEIV----EVLLKNGADVNAVDHAGMTPLR 85 (169)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHH
T ss_pred ccchHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHcCCCCCccCCCCCCHHH
Confidence 3445667778888876555543 44433221 112334445556665444 44455665544321 233455
Q ss_pred HHhcCCChHHHHHHHHhcCC--CCCceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 002975 122 LYSKCGDLNEANKIFKSMGN--KRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPN 179 (861)
Q Consensus 122 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 179 (861)
..+..|+.+-+..+++.-.. ..|..-++.|.. .++.|+.+ +.+.+.+.|..++
T Consensus 86 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~~----~v~~Ll~~g~~~~ 140 (169)
T 2y1l_E 86 LAALFGHLEIVEVLLKNGADVNANDMEGHTPLHL-AAMFGHLE----IVEVLLKNGADVN 140 (169)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH-HHHTTCHH----HHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH-HHHcCCHH----HHHHHHHcCCCCC
Confidence 55667777766666654211 122222333333 33445443 3444445565543
No 296
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=34.50 E-value=1.2e+02 Score=25.45 Aligned_cols=64 Identities=17% Similarity=0.247 Sum_probs=39.9
Q ss_pred hHHHHHHHHcCCHHHHHHHHHhcCCCCe---ehHHHHHHHHHhcCC--hhHHHHHHHHHhhcCCCCCHH
Q 002975 427 NSLISMYARSGRMEDARKAFESLFEKNL---VSYNTMVDAYAKNLN--SEKAFELLHEIEDTGVGTSAY 490 (861)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~ 490 (861)
+.++.=|...|+.++|.+.++++..|.. +....+..++-+.+. .+.+..++..+...|+-+...
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 4567778888888888888888865522 233444445544432 355677777777666544433
No 297
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=34.09 E-value=4.1e+02 Score=27.39 Aligned_cols=82 Identities=16% Similarity=0.170 Sum_probs=41.4
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhCCCCCChh--hHHHHHHHHHhcCCcchhHHHHHHHHHcCCCCCcc--hHHHHHHHHh
Q 002975 49 RLIYHLNDGRVQKAIFTLDLMTQKGNHPDLD--TYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSV--ILNSLISLYS 124 (861)
Q Consensus 49 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~ 124 (861)
.+...+..|+.+-...++ +.|..++.. ...+.|...+..|+.+.++.+ ++.|..++.. ...+.+...+
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~ 88 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLL----QRGASPNVSNVKVETPLHMAARAGHTEVAKYL----LQNKAKVNAKAKDDQTPLHCAA 88 (437)
T ss_dssp HHHHHHHHTCHHHHHHHH----HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHH----HHHTCCSSCCCTTSCCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhCCCCCCCCCCCCCCHHHHHH
Confidence 344556677765544443 445444322 122345555566666554444 4455443322 2233445556
Q ss_pred cCCChHHHHHHHHh
Q 002975 125 KCGDLNEANKIFKS 138 (861)
Q Consensus 125 ~~g~~~~A~~~~~~ 138 (861)
+.|+.+-+.-+++.
T Consensus 89 ~~g~~~~v~~Ll~~ 102 (437)
T 1n11_A 89 RIGHTNMVKLLLEN 102 (437)
T ss_dssp HHTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHhC
Confidence 67777766666654
No 298
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=33.53 E-value=3.3e+02 Score=26.16 Aligned_cols=57 Identities=5% Similarity=-0.036 Sum_probs=27.1
Q ss_pred HHHHHHhcCCChHHHHHHHHhcCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 002975 118 SLISLYSKCGDLNEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPN 179 (861)
Q Consensus 118 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 179 (861)
+.+...+..|+.+-+..+++.-.. ++...-.+.+...+..|+.+ +++.+.+.|..++
T Consensus 33 t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~ga~~~ 89 (285)
T 3kea_A 33 SASYYAIADNNVRLVCTLLNAGAL-KNLLENEFPLHQAATLEDTK----IVKILLFSGLDDS 89 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTGG-GSCCTTCCHHHHHTTSSSCH----HHHHHHHTTCCTT
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCC
Confidence 344555667777777777665211 22111122333334555544 3334444565554
No 299
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=33.29 E-value=2.1e+02 Score=25.11 Aligned_cols=48 Identities=6% Similarity=-0.056 Sum_probs=37.3
Q ss_pred HHHHHHHHhc--cCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 002975 677 GKHAAEMILE--QDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLI 724 (861)
Q Consensus 677 a~~~~~~~~~--~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~ 724 (861)
...+|+.+.. +.-.-+..|...+..|...|++.+|.++++.-.+++-+
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 4456666665 55667788999999999999999999999977775543
No 300
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=33.15 E-value=3.7e+02 Score=26.62 Aligned_cols=110 Identities=14% Similarity=0.094 Sum_probs=67.8
Q ss_pred HHhhcCChhHHHHHHHHHHhCCC------CCChhhHHHHHHHHHhcCCcchhHHHHHHHHHcCCCCCcchHHHHHHHHhc
Q 002975 52 YHLNDGRVQKAIFTLDLMTQKGN------HPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSK 125 (861)
Q Consensus 52 ~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 125 (861)
.+...|++.+|+..|+.....=+ +-+......+|..|. .+-.|..+ ++.++.+..+...-+.-+.+|..
T Consensus 123 k~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icr---EYilal~i--El~Rr~l~~~~~kR~lELAAYFT 197 (325)
T 3mv2_A 123 KNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAR---EYILGLSI--ELERRSLKEGNTVRMLELAAYFT 197 (325)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHH---HHHHHHHH--HHHHHTCCTTCHHHHHHHHHHGG
T ss_pred HHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHH---HHHHHHHH--HHHHHhcCcccHHHHHHHHHHhc
Confidence 56789999999999999876411 112223455555553 34444444 44455444444455555666655
Q ss_pred CCChHHHHHHHHhcCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 002975 126 CGDLNEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGF 176 (861)
Q Consensus 126 ~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 176 (861)
+-+++-.... -+...-+....+.+++..|..+-+++++.+.
T Consensus 198 ~c~LQp~H~~----------LaLr~AM~~a~K~KNy~tAa~fArrLLel~p 238 (325)
T 3mv2_A 198 KAKLSPIHRT----------NALQVAMSQHFKHKNFLQASYFAGEFLKIIS 238 (325)
T ss_dssp GSCCCHHHHH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cCCCcHHHHH----------HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 4444333222 2355566677889999999999999998654
No 301
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=32.86 E-value=4.3e+02 Score=27.23 Aligned_cols=87 Identities=14% Similarity=0.150 Sum_probs=46.7
Q ss_pred HHHHHHhcCCcchhHHHHHHHHHcCCCCCcc--hHHHHHHHHhcCCChHHHHHHHHhcCC--CCCceeHHHHHHHHHhcC
Q 002975 84 LLKSCIRSRNFHLGKLVHSLLTRSKLEPNSV--ILNSLISLYSKCGDLNEANKIFKSMGN--KRDIVSWSSMISSYVNRG 159 (861)
Q Consensus 84 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g 159 (861)
.|...+..|+.+..+.+ ++.|..++.. ...+.+...++.|+.+-+..+++.-.. ..+..-++.|.. .++.|
T Consensus 17 ~L~~Aa~~g~~~~v~~L----l~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~-A~~~g 91 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNL----LQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHC-AARIG 91 (437)
T ss_dssp HHHHHHHHTCHHHHHHH----HHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHH-HHHHT
T ss_pred HHHHHHHCCCHHHHHHH----HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHH-HHHCC
Confidence 34555667777655544 5566655532 233455666778888887777765321 122223344433 34556
Q ss_pred ChhHHHHHHHHHHHcCCCCC
Q 002975 160 KQVDAIHMFVEMLELGFCPN 179 (861)
Q Consensus 160 ~~~~A~~~~~~m~~~g~~p~ 179 (861)
+.+ +++.+.+.|..|+
T Consensus 92 ~~~----~v~~Ll~~ga~~~ 107 (437)
T 1n11_A 92 HTN----MVKLLLENNANPN 107 (437)
T ss_dssp CHH----HHHHHHHHTCCTT
T ss_pred CHH----HHHHHHhCCCCCC
Confidence 554 4444445566554
No 302
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=32.11 E-value=3e+02 Score=25.17 Aligned_cols=55 Identities=15% Similarity=0.044 Sum_probs=34.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 002975 569 GFAARALEIFYKMLADGIKPNG-ITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ 624 (861)
Q Consensus 569 g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 624 (861)
+...++.++|..|...|+--.. .-|......+...|++++|.++|+.-+ ..+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI-~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGA-ENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCcc
Confidence 3355677777777776665553 345556666666777777777776666 445555
No 303
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=31.91 E-value=2e+02 Score=26.03 Aligned_cols=69 Identities=16% Similarity=0.154 Sum_probs=41.1
Q ss_pred HHHHHHHHHhCCCCCCHH-------HHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhH
Q 002975 642 LTEALEFIRSMPLSADVL-------VWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEY 710 (861)
Q Consensus 642 ~~eA~~~~~~~~~~p~~~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~ 710 (861)
++.|+.+++.+..+-|.. +--.....|.+.|..++|+.++++.++-.|++...-..|.++-.+...+..
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~ 169 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHS 169 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcH
Confidence 556666666665333321 122344669999999999999999999888776666666655544444443
No 304
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=31.84 E-value=77 Score=34.06 Aligned_cols=49 Identities=14% Similarity=0.036 Sum_probs=31.0
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHH
Q 002975 664 FLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVA 712 (861)
Q Consensus 664 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~ 712 (861)
|+...|-....+.|...|+++..+.|++..+|..|+.++...|+.-+|.
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~ 206 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTI 206 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHH
Confidence 3444455556666777777777777777777777777666666655543
No 305
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=31.38 E-value=4.2e+02 Score=27.86 Aligned_cols=129 Identities=16% Similarity=0.113 Sum_probs=72.9
Q ss_pred HHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH
Q 002975 515 IIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGI 591 (861)
Q Consensus 515 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 591 (861)
+.+.|++--...|..-.+.+...|++++|.++-...+. ++..|.+.+-..=...|+..--+.+|.-+++.| +.|..
T Consensus 352 A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ 430 (494)
T 1bpo_A 352 AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKY 430 (494)
T ss_dssp HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHH
T ss_pred HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchH
Confidence 34556665556666667788888999999988877664 344444444333334566666677777777766 44432
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC
Q 002975 592 TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP 653 (861)
Q Consensus 592 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~ 653 (861)
-=.-+...-...|+.+-..+++ ++..+..+.+ |.|+. +..+..-|+.+|.+..
T Consensus 431 ESlEl~r~vL~q~r~~llekWl----~e~KL~~SEe----LGDlv-k~~d~~LAl~IY~~a~ 483 (494)
T 1bpo_A 431 ESLELCRPVLQQGRKQLLEKWL----KEDKLECSEE----LGDLV-KSVDPTLALSVYLRAN 483 (494)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH----HHTCSCCCHH----HHHHH-HHHCSHHHHHHHHHHC
T ss_pred HhhHHhHHHHhccHHHHHHHHH----hcCCccccHH----hHhhh-hhcCHHHHHHHHHHcC
Confidence 2122344444455544333333 3445555543 33333 4445566666666654
No 306
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=27.55 E-value=2.7e+02 Score=26.25 Aligned_cols=21 Identities=38% Similarity=0.404 Sum_probs=13.8
Q ss_pred HHHHHhcCChhHHHHHHHHHh
Q 002975 461 VDAYAKNLNSEKAFELLHEIE 481 (861)
Q Consensus 461 i~~~~~~g~~~~A~~l~~~m~ 481 (861)
++.+....++++|.+++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 556666677777777766654
No 307
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=27.50 E-value=3e+02 Score=27.63 Aligned_cols=17 Identities=18% Similarity=-0.040 Sum_probs=9.3
Q ss_pred HHHccCCHHHHHHHHHh
Q 002975 533 MYSRCANVEAAFQVFKE 549 (861)
Q Consensus 533 ~y~~~g~~~~A~~~~~~ 549 (861)
..+..|+.+-+..+++.
T Consensus 179 ~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 179 RAMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhc
Confidence 34455666655555554
No 308
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=27.19 E-value=1.1e+02 Score=26.59 Aligned_cols=63 Identities=17% Similarity=0.260 Sum_probs=37.8
Q ss_pred hHHHHHHHHcCCHHHHHHHHHhcCCCCe---ehHHHHHHHHHhcCC--hhHHHHHHHHHhhcCCCCCH
Q 002975 427 NSLISMYARSGRMEDARKAFESLFEKNL---VSYNTMVDAYAKNLN--SEKAFELLHEIEDTGVGTSA 489 (861)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~ 489 (861)
+.++.=|...|+.++|...++++..|.. +....+..++-+.++ .+.+..++..+...|+-+..
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 4567777778888888888888865522 233344444444322 34566777777666644433
No 309
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=26.49 E-value=3.7e+02 Score=24.52 Aligned_cols=23 Identities=13% Similarity=-0.122 Sum_probs=13.7
Q ss_pred HHHHhcccCChHHHHHHHHHHHH
Q 002975 394 VLKACGNLLDSNVAEQVYTHAVK 416 (861)
Q Consensus 394 ll~a~~~~~~~~~a~~i~~~~~~ 416 (861)
.+......++...+.++.+.+.+
T Consensus 213 ~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 213 PLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 44445566666666666666554
No 310
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=25.19 E-value=3.9e+02 Score=24.31 Aligned_cols=46 Identities=13% Similarity=-0.042 Sum_probs=25.4
Q ss_pred HHHHhhCCCCCChhh--HHHHHHHhcccCChHHHHHHHHHHHHcCCCC
Q 002975 376 FSDMIQGQVAPNHFT--FASVLKACGNLLDSNVAEQVYTHAVKRGRAL 421 (861)
Q Consensus 376 ~~~m~~~g~~p~~~t--~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 421 (861)
++.+.+.|..++... -.+.+...+..++.+.+..+++.+.+.|..+
T Consensus 137 v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 137 VRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 333444555543321 1234445556677777777777777776543
No 311
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=24.83 E-value=2.1e+02 Score=23.96 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhccc--chHHHHHHHHHHHHhCCCC
Q 002975 457 YNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIG--AIGKGEQIHARIIKSGFES 522 (861)
Q Consensus 457 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~~~ 522 (861)
.+.++.=|...|+.++|.+.++++..... -.......+..+.-+.+ ..+....++..+.+.|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 45678888888999999999988862211 12233344444444432 2344555565565555433
No 312
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=23.61 E-value=2.1e+02 Score=27.01 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=15.3
Q ss_pred ChhHHHHHHHHhhhcCCHHHHHHHHHh
Q 002975 625 RMEHYACMVDLLGRSGSLTEALEFIRS 651 (861)
Q Consensus 625 ~~~~~~~l~~~~~r~g~~~eA~~~~~~ 651 (861)
+.......+..+.|-|+-++|.++|-+
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 344444455666666666666666543
No 313
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=22.90 E-value=3.1e+02 Score=25.24 Aligned_cols=41 Identities=15% Similarity=0.138 Sum_probs=24.1
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 002975 664 FLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS 704 (861)
Q Consensus 664 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~ 704 (861)
.+..|.+.|.+++|+.++++.++-+|.+-..-..|.++-.+
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~ 160 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIRE 160 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Confidence 34557777778888887777777654433333344444333
No 314
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.19 E-value=2e+02 Score=30.79 Aligned_cols=61 Identities=11% Similarity=0.097 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--CCCh--hHH-HHHHHHhhhcCCHHHHHHHHHhC
Q 002975 590 GITYIAVLSACSHAGLISEGWKHFRSMYDEHGI--VQRM--EHY-ACMVDLLGRSGSLTEALEFIRSM 652 (861)
Q Consensus 590 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~~--~~~-~~l~~~~~r~g~~~eA~~~~~~~ 652 (861)
...++.++..|.+.+.+++|..+..+.. +.. .++. ..| -.+...+.-.+++.+|.+.+..+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3456777777888888888888777653 110 1111 122 23345666677888887777664
No 315
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=21.53 E-value=5.2e+02 Score=24.45 Aligned_cols=244 Identities=11% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHhccCCCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccC-ChHHHHHHHHHHH-HcCC
Q 002975 342 KVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLL-DSNVAEQVYTHAV-KRGR 419 (861)
Q Consensus 342 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~a~~i~~~~~-~~g~ 419 (861)
.++..+.++|...-...+.++.+.+ ..+++..+..+.. .++...-...+.++...+ .......++..+. ..--
T Consensus 27 ~L~~~L~~~~~~vr~~A~~~L~~~~--~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~ 101 (280)
T 1oyz_A 27 ELFRLLDDHNSLKRISSARVLQLRG--GQDAVRLAIEFCS---DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN 101 (280)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHC--CHHHHHHHHHHHT---CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHccC--CchHHHHHHHHHc---CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc
Q ss_pred CCCcchhhHHHHHHHHcC------CHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHH
Q 002975 420 ALDDCVGNSLISMYARSG------RMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFA 493 (861)
Q Consensus 420 ~~~~~~~~~li~~~~~~g------~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 493 (861)
.++..+-...+.++++.+ ...-...+...+..++...-...+.++...|..+..-.+...+. .++...-.
T Consensus 102 d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~----d~~~~vr~ 177 (280)
T 1oyz_A 102 DKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLK----DPNGDVRN 177 (280)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHT----CSSHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHc----CCCHHHHH
Q ss_pred HHHHHhhccc-chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChH
Q 002975 494 SLLSGASSIG-AIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAA 572 (861)
Q Consensus 494 ~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 572 (861)
..+.+....+ ....+...+..+.+ .++..+-...+.++.+.|+.+....+.+.+.+++ .....+.++.+.|. .
T Consensus 178 ~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-~ 251 (280)
T 1oyz_A 178 WAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNT--VYDDIIEAAGELGD-K 251 (280)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-G
T ss_pred HHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-h
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 002975 573 RALEIFYKMLADGIKPNGITYIAVLSACSH 602 (861)
Q Consensus 573 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 602 (861)
+++..+.++.+ -.++.......+.+..+
T Consensus 252 ~~~~~L~~~l~--~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 252 TLLPVLDTMLY--KFDDNEIITSAIDKLKR 279 (280)
T ss_dssp GGHHHHHHHHT--TSSCCHHHHHHHHHHTC
T ss_pred hhhHHHHHHHh--cCCCcHHHHHHHHHhhc
No 316
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=21.50 E-value=2.5e+02 Score=24.33 Aligned_cols=64 Identities=14% Similarity=0.106 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcc--cchHHHHHHHHHHHHhCCC
Q 002975 457 YNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSI--GAIGKGEQIHARIIKSGFE 521 (861)
Q Consensus 457 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~--~~~~~a~~~~~~~~~~~~~ 521 (861)
.+.++.=|...|+.++|.+.++++..... -..+....+..++-+. ...+....++..+.+.|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 46678888888999999999988852211 1223334444444442 2234455555555555543
No 317
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=20.76 E-value=6e+02 Score=24.84 Aligned_cols=58 Identities=17% Similarity=0.197 Sum_probs=31.2
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHhCCCCCChhh---HHHHHHHHHhcCCcchhHHHHHHHHHcCCCCC
Q 002975 47 SNRLIYHLNDGRVQKAIFTLDLMTQKGNHPDLDT---YSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPN 112 (861)
Q Consensus 47 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 112 (861)
.+.|...++.|+.+....+++ .|..++... -.+-|...+..|+.+.++ .+++.|..++
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~----~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~----~Ll~~ga~~~ 86 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVE----LLLRHGADPV 86 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH----HTCCTTCCCTTTCCCHHHHHHHTTCHHHHH----HHHHTTCCTT
T ss_pred ChHHHHHHHcCCHHHHHHHHH----CCCCCCccCCCCCcCHHHHHHHcCCHHHHH----HHHHcCCchh
Confidence 345667889999876655543 454444221 112344455666665444 3455565443
No 318
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=20.48 E-value=6.2e+02 Score=24.88 Aligned_cols=66 Identities=15% Similarity=0.223 Sum_probs=45.1
Q ss_pred hHHHHHHHHcCCHHHHHHHHHhcCCCCe---ehHHHHHHHHHhcCC--hhHHHHHHHHHhhcCCCCCHHHH
Q 002975 427 NSLISMYARSGRMEDARKAFESLFEKNL---VSYNTMVDAYAKNLN--SEKAFELLHEIEDTGVGTSAYTF 492 (861)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~ 492 (861)
+.++.=|...|+.++|.+.++++..|.. +....+..++-+.++ .+....++..+...|+-+.....
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~ 240 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMK 240 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 4678889899999999999999977632 234444445544333 45577888888877765554443
No 319
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=20.08 E-value=4.9e+02 Score=23.62 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=9.3
Q ss_pred HHHHhcCCChHHHHHHHHh
Q 002975 120 ISLYSKCGDLNEANKIFKS 138 (861)
Q Consensus 120 l~~~~~~g~~~~A~~~~~~ 138 (861)
+...+..|+.+-+..+++.
T Consensus 81 L~~A~~~~~~~~~~~Ll~~ 99 (237)
T 3b7b_A 81 LHLAAKKGHYEVVQYLLSN 99 (237)
T ss_dssp HHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhC
Confidence 3334455555555555543
Done!