BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002976
(861 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CBN|A Chain A, Crystal Structure Of Zipd From Escherichia Coli
Length = 306
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 86/328 (26%), Positives = 136/328 (41%), Gaps = 73/328 (22%)
Query: 492 LEIVLLGTGSSQPSKYRNVSSIYVNL---FSKGSLLLDCGEGTLGQLKRRYGVEGADSAV 548
+ ++ LGT + P++ RNV++I +NL G L DCGEGT QL G
Sbjct: 2 MNLIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQHQLLHTAFNPG----- 56
Query: 549 RKLRCIWISHIHADHHXXXXXXXXXXXXXXKGVPHEPLLVVGPGPLKRYLDAYERLEDLD 608
KL I+ISH+H DH G+ +PL + GP ++ +++ R+
Sbjct: 57 -KLDKIFISHLHGDH--LFGLPGLLCSRSMSGII-QPLTIYGPQGIREFVETALRIS--- 109
Query: 609 MQFLHCRYTREASWNDFEGNGEPVKNLSTPGSPFSTEGLINKTEANLF------------ 656
SW D+ P++ + +GL T L
Sbjct: 110 -----------GSWTDY-----PLEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEE 153
Query: 657 --AKGSCMQSVWKGPGIPVDNNAAFPLLKNLKNVLNEAGLETLISFPVVHCPQAFGFALK 714
A G+ K G+P PL + LK AG L+
Sbjct: 154 HDAPGALNAQALKAAGVPPG-----PLFQELK-----AGKT---------------ITLE 188
Query: 715 AAERINSVGKV---IPGWKIVYSGDTRPCPELVEASRGATVLIHEATFEDGMMEEAIAKN 771
+IN + +PG + GDT PC ++ ++G V++HEAT + M +A ++
Sbjct: 189 DGRQINGADYLAAPVPGKALAIFGDTGPCDAALDLAKGVDVMVHEATLDITMEAKANSRG 248
Query: 772 HSTTKEAIDVGSSAGVYRIILTHFSQRY 799
HS+T++A + AGV ++I+TH S RY
Sbjct: 249 HSSTRQAATLAREAGVGKLIITHVSSRY 276
>pdb|2FK6|A Chain A, Crystal Structure Of Rnase ZTRNA(THR) COMPLEX
Length = 320
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 728 GWKIVYSGDTRPCPELVEASRGATVLIHEATFEDGMMEEAIAKNHSTTKEAIDVGSSAGV 787
G +V+SGDTR +L E +R V++HEATF + A HSTT++A A
Sbjct: 203 GRSVVFSGDTRVSDKLKELARDCDVMVHEATFAKEDRKLAYDYYHSTTEQAAVTAKEARA 262
Query: 788 YRIILTHFSQRY 799
++ILTH S RY
Sbjct: 263 KQLILTHISARY 274
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 492 LEIVLLGTGSSQPSKYRNVSSIYVNLFS--KGSLLLDCGEGTLGQLKRRYGVEGADSAVR 549
+E++ LGTG+ P+K RNV+S+ + L + L DCGE T Q+ R
Sbjct: 1 MELLFLGTGAGIPAKARNVTSVALKLLEERRSVWLFDCGEATQHQMLH------TTIKPR 54
Query: 550 KLRCIWISHIHADH 563
K+ I+I+H+ DH
Sbjct: 55 KIEKIFITHMAGDH 68
>pdb|4GCW|A Chain A, Crystal Structure Of Rnase Z In Complex With Precursor
Trna(Thr)
Length = 320
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 728 GWKIVYSGDTRPCPELVEASRGATVLIHEATFEDGMMEEAIAKNHSTTKEAIDVGSSAGV 787
G +V+SGDTR +L E +R V++HEATF + A HSTT++A A
Sbjct: 203 GRSVVFSGDTRVSDKLKELARDCDVMVHEATFAKEDRKLAYDYYHSTTEQAAVTAKEARA 262
Query: 788 YRIILTHFSQRY 799
++ILTH S RY
Sbjct: 263 KQLILTHISARY 274
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 492 LEIVLLGTGSSQPSKYRNVSSIYVNLFS--KGSLLLDCGEGTLGQLKRRYGVEGADSAVR 549
+E++ LGTG+ P+K RNV+S+ + L + L DCGE T Q+ R
Sbjct: 1 MELLFLGTGAGIPAKARNVTSVALKLLEERRSVWLFDCGEATQHQMLH------TTIKPR 54
Query: 550 KLRCIWISHIHADH 563
K+ I+I+H+H DH
Sbjct: 55 KIEKIFITHMHGDH 68
>pdb|1Y44|A Chain A, Crystal Structure Of Rnase Z
pdb|1Y44|B Chain B, Crystal Structure Of Rnase Z
Length = 320
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 40/72 (55%)
Query: 728 GWKIVYSGDTRPCPELVEASRGATVLIHEATFEDGMMEEAIAKNHSTTKEAIDVGSSAGV 787
G +V+SGDTR +L E +R V +HEATF + A HSTT++A A
Sbjct: 203 GRSVVFSGDTRVSDKLKELARDCDVXVHEATFAKEDRKLAYDYYHSTTEQAAVTAKEARA 262
Query: 788 YRIILTHFSQRY 799
++ILTH S RY
Sbjct: 263 KQLILTHISARY 274
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Query: 493 EIVLLGTGSSQPSKYRNVSSIYVNLFS--KGSLLLDCGEGTLGQLKRRYGVEGADSAVRK 550
E++ LGTG+ P+K RNV+S+ + L + L DCGE T Q RK
Sbjct: 2 ELLFLGTGAGIPAKARNVTSVALKLLEERRSVWLFDCGEATQHQXLH------TTIKPRK 55
Query: 551 LRCIWISHIHADH 563
+ I+I+H H DH
Sbjct: 56 IEKIFITHXHGDH 68
>pdb|3ZWF|A Chain A, Crystal Structure Of Human Trnase Z, Short Form (Elac1).
pdb|3ZWF|B Chain B, Crystal Structure Of Human Trnase Z, Short Form (Elac1)
Length = 368
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 731 IVYSGDTRPCPELVEASRGATVLIHEATFEDGMMEEAIAKNHSTTKEAIDVGSSAGVYRI 790
+V G + C E A +LIHEAT +D M++A HST + A R+
Sbjct: 255 VVGDGGVKLCFE-------ADLLIHEATLDDAQMDKAKEHGHSTPQMAATFAKLCRAKRL 307
Query: 791 ILTHFSQRYPKIPVVDE 807
+LTHFSQRY + + E
Sbjct: 308 VLTHFSQRYKPVALARE 324
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 492 LEIVLLGTGSSQPSKYRNVSSIYVNLFSKGSLLLDCGEGTLGQLKRRYGVEGADSAVRKL 551
+++ LGTG++ PS R S++ + + L DCGEGT QL + G ++
Sbjct: 1 MDVTFLGTGAAYPSPTRGASAVVLRCEGE-CWLFDCGEGTQTQLMKSQLKAG------RI 53
Query: 552 RCIWISHIHADH 563
I+I+H+H DH
Sbjct: 54 TKIFITHLHGDH 65
>pdb|1WW1|A Chain A, Crystal Structure Of Trnase Z From Thermotoga Maritima
pdb|1WW1|B Chain B, Crystal Structure Of Trnase Z From Thermotoga Maritima
pdb|2E7Y|A Chain A, High Resolution Structure Of T. Maritima Trnase Z
pdb|2E7Y|B Chain B, High Resolution Structure Of T. Maritima Trnase Z
Length = 280
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 745 EASRGATVLIHEATFEDGMMEEAIAKNHSTTKEAIDVGSSAGVYRIILTHFSQRYPK 801
E RG +LIHE TF D + KNH+ E ++ +AGV ++IL H S RY +
Sbjct: 197 EEIRGTELLIHECTFLDA--RDRRYKNHAAIDEVMESVKAAGVKKVILYHISTRYIR 251
>pdb|1ZKP|A Chain A, 1.5a Resolution Crystal Structure Of A Metallo Beta
Lactamase Family Protein, The Elac Homolgue Of Bacillus
Anthracis, A Putative Ribonuclease
pdb|1ZKP|B Chain B, 1.5a Resolution Crystal Structure Of A Metallo Beta
Lactamase Family Protein, The Elac Homolgue Of Bacillus
Anthracis, A Putative Ribonuclease
pdb|1ZKP|C Chain C, 1.5a Resolution Crystal Structure Of A Metallo Beta
Lactamase Family Protein, The Elac Homolgue Of Bacillus
Anthracis, A Putative Ribonuclease
pdb|1ZKP|D Chain D, 1.5a Resolution Crystal Structure Of A Metallo Beta
Lactamase Family Protein, The Elac Homolgue Of Bacillus
Anthracis, A Putative Ribonuclease
Length = 268
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 731 IVYSGDTRPCPELVEASRGATVLIHEATFEDGMMEEAIAKNHSTTKEAIDVGSSAGVYRI 790
+VYS D+ PE + ++ A + I E +EA H + E + A V +
Sbjct: 174 VVYSADSSYIPEFIPFTKDADLFICECNXY--AHQEAAKAGHXNSTEVASIAKDANVKEL 231
Query: 791 ILTHF 795
+LTH
Sbjct: 232 LLTHL 236
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Query: 523 LLLDCGEGTLGQLKRRYGVEGADSAVRKLRCIWISHIHADH 563
LL+DCG G L QL++ D+ V +SH H DH
Sbjct: 55 LLVDCGSGVLAQLQKYITPSDIDAVV-------LSHYHHDH 88
>pdb|1DPT|A Chain A, D-Dopachrome Tautomerase
pdb|1DPT|B Chain B, D-Dopachrome Tautomerase
pdb|1DPT|C Chain C, D-Dopachrome Tautomerase
pdb|3KAN|A Chain A, D-Dopachrome Tautomerase (D-Dt)MACROPHAGE MIGRATION
INHIBITORY FACTOR 2 (Mif2) Complexed With Inhibitor
4-Ipp
pdb|3KAN|B Chain B, D-Dopachrome Tautomerase (D-Dt)MACROPHAGE MIGRATION
INHIBITORY FACTOR 2 (Mif2) Complexed With Inhibitor
4-Ipp
pdb|3KAN|C Chain C, D-Dopachrome Tautomerase (D-Dt)MACROPHAGE MIGRATION
INHIBITORY FACTOR 2 (Mif2) Complexed With Inhibitor
4-Ipp
Length = 117
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 692 AGLETLISFPVVHCPQAFGFALKAAERINSVGKVIPGWKIVYSGDTRPCPELVEASRG 749
AGLE + C A K A+R+N V PG + SG T PC +L +S G
Sbjct: 16 AGLEKRL------CAAAASILGKPADRVNVT--VRPGLAMALSGSTEPCAQLSISSIG 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,287,653
Number of Sequences: 62578
Number of extensions: 980650
Number of successful extensions: 1977
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1947
Number of HSP's gapped (non-prelim): 25
length of query: 861
length of database: 14,973,337
effective HSP length: 107
effective length of query: 754
effective length of database: 8,277,491
effective search space: 6241228214
effective search space used: 6241228214
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)