Query 002976
Match_columns 861
No_of_seqs 523 out of 3653
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 14:33:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002976.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002976hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2121 Predicted metal-depend 100.0 6E-117 1E-121 981.8 40.1 733 7-854 12-745 (746)
2 COG1234 ElaC Metal-dependent h 100.0 4.9E-44 1.1E-48 383.1 25.2 282 491-825 1-292 (292)
3 TIGR02649 true_RNase_BN ribonu 100.0 2.6E-41 5.7E-46 368.1 24.4 256 494-824 1-303 (303)
4 TIGR02651 RNase_Z ribonuclease 100.0 9.2E-40 2E-44 356.3 24.1 257 493-824 1-299 (299)
5 PRK00055 ribonuclease Z; Revie 100.0 2.4E-35 5.1E-40 317.0 23.3 260 491-825 1-267 (270)
6 PRK11244 phnP carbon-phosphoru 100.0 1E-33 2.2E-38 300.1 21.8 229 492-824 1-250 (250)
7 TIGR02649 true_RNase_BN ribonu 100.0 3E-33 6.5E-38 304.8 23.1 225 46-316 1-233 (303)
8 PRK02113 putative hydrolase; P 100.0 3.8E-33 8.2E-38 296.4 21.2 234 492-824 1-252 (252)
9 PRK05184 pyrroloquinoline quin 100.0 2.5E-31 5.4E-36 287.7 22.4 246 492-824 1-302 (302)
10 TIGR02651 RNase_Z ribonuclease 100.0 1.9E-30 4.1E-35 283.0 23.3 224 45-315 1-230 (299)
11 COG1234 ElaC Metal-dependent h 100.0 2.5E-29 5.4E-34 269.6 20.1 215 44-316 2-221 (292)
12 TIGR02108 PQQ_syn_pqqB coenzym 100.0 5.4E-28 1.2E-32 260.3 20.5 244 493-824 1-302 (302)
13 PRK02126 ribonuclease Z; Provi 100.0 1.3E-27 2.8E-32 260.7 22.7 244 510-802 16-320 (334)
14 TIGR03307 PhnP phosphonate met 100.0 9.2E-28 2E-32 252.7 19.3 213 504-822 21-238 (238)
15 TIGR02650 RNase_Z_T_toga ribon 99.9 6.8E-26 1.5E-30 235.2 17.1 212 511-801 12-250 (277)
16 PRK02126 ribonuclease Z; Provi 99.9 1.4E-24 2.9E-29 237.0 23.1 224 58-315 15-276 (334)
17 PRK00055 ribonuclease Z; Revie 99.9 1.5E-22 3.3E-27 217.5 20.2 194 43-316 1-197 (270)
18 PF12706 Lactamase_B_2: Beta-l 99.9 8.7E-22 1.9E-26 200.5 14.3 184 522-795 2-194 (194)
19 PRK00685 metal-dependent hydro 99.8 7.5E-19 1.6E-23 183.9 19.3 204 492-824 1-228 (228)
20 PRK04286 hypothetical protein; 99.8 5.8E-19 1.3E-23 190.9 12.6 250 492-823 1-283 (298)
21 TIGR00649 MG423 conserved hypo 99.8 1E-17 2.2E-22 191.1 16.0 209 492-799 1-230 (422)
22 PRK11709 putative L-ascorbate 99.7 5E-16 1.1E-20 170.5 19.0 203 489-797 35-285 (355)
23 PRK05184 pyrroloquinoline quin 99.7 6.4E-16 1.4E-20 167.6 13.2 182 44-252 1-221 (302)
24 PRK02113 putative hydrolase; P 99.6 3.7E-15 8E-20 158.5 13.7 142 44-212 1-161 (252)
25 COG1235 PhnP Metal-dependent h 99.6 2E-14 4.3E-19 154.0 15.8 83 704-801 155-241 (269)
26 PF13691 Lactamase_B_4: tRNase 99.6 3.5E-15 7.6E-20 119.2 6.9 60 47-108 1-63 (63)
27 TIGR03675 arCOG00543 arCOG0054 99.5 9.1E-14 2E-18 163.5 17.9 199 489-762 172-377 (630)
28 TIGR02650 RNase_Z_T_toga ribon 99.5 2.5E-14 5.3E-19 149.2 11.1 155 61-242 11-169 (277)
29 PRK11244 phnP carbon-phosphoru 99.5 1.1E-13 2.4E-18 146.8 14.8 164 44-251 1-186 (250)
30 TIGR02108 PQQ_syn_pqqB coenzym 99.5 2.4E-13 5.3E-18 146.8 12.8 178 57-266 36-235 (302)
31 COG1236 YSH1 Predicted exonucl 99.4 1.2E-12 2.5E-17 148.3 11.6 190 492-763 1-194 (427)
32 COG0595 mRNA degradation ribon 99.4 5.5E-12 1.2E-16 144.4 15.0 177 490-761 7-203 (555)
33 smart00849 Lactamase_B Metallo 99.3 8.6E-12 1.9E-16 125.2 11.0 77 507-601 3-82 (183)
34 PF02112 PDEase_II: cAMP phosp 99.3 4.1E-11 8.9E-16 129.4 16.5 250 492-800 1-303 (335)
35 COG1782 Predicted metal-depend 99.3 3.5E-11 7.5E-16 130.4 13.5 258 490-830 179-457 (637)
36 TIGR03307 PhnP phosphonate met 99.2 4.6E-11 9.9E-16 125.9 12.6 152 56-251 24-176 (238)
37 PF13483 Lactamase_B_3: Beta-l 99.2 6.8E-11 1.5E-15 116.9 12.8 82 692-794 73-163 (163)
38 KOG1136 Predicted cleavage and 99.2 4.7E-11 1E-15 122.9 8.2 192 491-761 3-208 (501)
39 KOG2121 Predicted metal-depend 99.2 3.7E-11 8E-16 136.5 7.4 114 29-142 423-553 (746)
40 COG2220 Predicted Zn-dependent 99.0 4.8E-09 1E-13 111.9 17.0 195 489-796 4-213 (258)
41 KOG1137 mRNA cleavage and poly 99.0 4.1E-10 8.9E-15 123.2 4.4 192 489-761 11-211 (668)
42 TIGR00649 MG423 conserved hypo 98.9 2E-08 4.4E-13 114.8 14.8 135 45-217 2-151 (422)
43 PF00753 Lactamase_B: Metallo- 98.9 9.2E-09 2E-13 103.3 10.2 62 509-573 5-66 (194)
44 PF12706 Lactamase_B_2: Beta-l 98.8 8.5E-09 1.9E-13 104.8 8.4 105 69-195 1-114 (194)
45 PRK04286 hypothetical protein; 98.8 1.8E-08 3.9E-13 109.4 10.8 88 44-135 1-105 (298)
46 PRK11921 metallo-beta-lactamas 98.6 1.8E-07 3.9E-12 105.9 11.8 76 510-599 33-109 (394)
47 PRK00685 metal-dependent hydro 98.6 1.3E-07 2.8E-12 99.0 9.9 130 44-217 1-135 (228)
48 COG1237 Metal-dependent hydrol 98.6 1.6E-07 3.4E-12 96.0 9.7 77 506-596 18-96 (259)
49 smart00849 Lactamase_B Metallo 98.6 3E-07 6.6E-12 92.0 10.7 74 57-140 4-81 (183)
50 TIGR03413 GSH_gloB hydroxyacyl 98.6 3.4E-07 7.3E-12 96.9 10.9 64 511-593 11-76 (248)
51 COG1237 Metal-dependent hydrol 98.5 2.6E-07 5.6E-12 94.5 7.4 74 57-136 20-96 (259)
52 COG0595 mRNA degradation ribon 98.5 1.2E-06 2.7E-11 100.9 13.3 137 43-217 8-159 (555)
53 TIGR03675 arCOG00543 arCOG0054 98.4 6.7E-07 1.5E-11 105.9 7.8 91 41-140 172-269 (630)
54 KOG1361 Predicted hydrolase in 98.4 1E-06 2.2E-11 98.1 8.5 59 694-762 172-235 (481)
55 PRK10241 hydroxyacylglutathion 98.3 5E-06 1.1E-10 88.1 13.1 64 512-593 14-79 (251)
56 PRK05452 anaerobic nitric oxid 98.3 2.6E-06 5.7E-11 98.4 11.7 77 510-600 35-112 (479)
57 COG1235 PhnP Metal-dependent h 98.3 2.1E-06 4.6E-11 92.0 10.2 74 42-117 2-87 (269)
58 COG5212 PDE1 Low-affinity cAMP 98.3 2.5E-06 5.5E-11 86.4 9.4 177 548-800 110-318 (356)
59 KOG3798 Predicted Zn-dependent 98.3 3.5E-06 7.5E-11 84.5 9.1 89 695-797 198-301 (343)
60 TIGR00361 ComEC_Rec2 DNA inter 98.2 2.2E-05 4.8E-10 94.8 16.1 65 491-573 439-513 (662)
61 PLN02469 hydroxyacylglutathion 98.2 1.7E-05 3.7E-10 84.2 12.5 65 512-592 14-79 (258)
62 COG2248 Predicted hydrolase (m 98.1 5.1E-05 1.1E-09 76.6 14.1 98 691-801 143-253 (304)
63 PLN02398 hydroxyacylglutathion 98.1 1.3E-05 2.8E-10 87.3 10.5 67 511-594 88-155 (329)
64 COG0491 GloB Zn-dependent hydr 98.0 3.6E-05 7.7E-10 81.0 11.5 61 507-572 22-84 (252)
65 TIGR03413 GSH_gloB hydroxyacyl 98.0 3.9E-05 8.5E-10 81.2 11.4 64 59-133 10-76 (248)
66 PRK11921 metallo-beta-lactamas 97.9 4.8E-05 1E-09 86.2 11.7 74 58-139 32-109 (394)
67 PF00753 Lactamase_B: Metallo- 97.9 5.1E-06 1.1E-10 83.2 2.3 58 58-115 5-66 (194)
68 PLN02962 hydroxyacylglutathion 97.9 6.9E-05 1.5E-09 79.0 10.7 55 510-572 23-83 (251)
69 PRK11539 ComEC family competen 97.9 0.00015 3.3E-09 88.8 15.2 68 489-573 498-574 (755)
70 COG1782 Predicted metal-depend 97.9 1.8E-05 3.8E-10 87.0 5.8 88 44-140 181-275 (637)
71 PRK11709 putative L-ascorbate 97.8 0.00018 3.9E-09 79.7 12.8 119 42-194 36-185 (355)
72 PRK14866 hypothetical protein; 97.8 1.5E-05 3.2E-10 89.0 4.0 53 216-270 393-445 (451)
73 COG2333 ComEC Predicted hydrol 97.8 0.00032 7E-09 75.0 13.2 79 492-594 44-127 (293)
74 COG1236 YSH1 Predicted exonucl 97.7 0.00012 2.5E-09 83.5 9.9 90 44-142 1-92 (427)
75 PF13691 Lactamase_B_4: tRNase 97.7 9.8E-05 2.1E-09 59.5 5.7 50 510-566 12-63 (63)
76 TIGR00361 ComEC_Rec2 DNA inter 97.6 0.00017 3.6E-09 87.3 9.7 76 43-133 439-524 (662)
77 KOG1136 Predicted cleavage and 97.6 7.9E-05 1.7E-09 77.7 5.5 76 43-120 3-88 (501)
78 PRK10241 hydroxyacylglutathion 97.6 0.00018 3.8E-09 76.4 7.7 62 62-133 15-79 (251)
79 PLN02398 hydroxyacylglutathion 97.5 0.00071 1.5E-08 73.9 11.9 63 60-133 88-154 (329)
80 PLN02469 hydroxyacylglutathion 97.4 0.00042 9E-09 73.6 8.3 62 61-132 14-79 (258)
81 COG0426 FpaA Uncharacterized f 97.4 0.0012 2.6E-08 72.5 11.2 78 511-602 37-115 (388)
82 PRK11539 ComEC family competen 97.3 0.00074 1.6E-08 82.9 10.1 77 41-132 498-584 (755)
83 KOG0813 Glyoxylase [General fu 97.2 0.0011 2.4E-08 69.1 8.8 38 547-592 48-85 (265)
84 PRK05452 anaerobic nitric oxid 97.1 0.0011 2.3E-08 77.0 7.4 74 58-139 34-111 (479)
85 KOG1135 mRNA cleavage and poly 97.1 0.0019 4.2E-08 73.9 8.9 83 494-596 5-89 (764)
86 COG2333 ComEC Predicted hydrol 96.9 0.0037 7.9E-08 67.0 9.1 80 44-135 44-128 (293)
87 PLN02962 hydroxyacylglutathion 96.9 0.0023 5E-08 67.6 7.3 68 41-114 8-83 (251)
88 KOG1137 mRNA cleavage and poly 96.8 0.0004 8.8E-09 77.3 1.2 78 41-120 11-93 (668)
89 PF02112 PDEase_II: cAMP phosp 96.8 0.0061 1.3E-07 66.6 10.2 99 45-148 2-130 (335)
90 KOG0813 Glyoxylase [General fu 96.7 0.0079 1.7E-07 62.8 9.2 109 60-214 14-128 (265)
91 COG0491 GloB Zn-dependent hydr 96.7 0.0035 7.5E-08 65.8 6.8 52 60-114 26-84 (252)
92 PF13483 Lactamase_B_3: Beta-l 96.0 0.01 2.3E-07 58.4 5.7 52 45-108 1-52 (163)
93 KOG1135 mRNA cleavage and poly 95.3 0.036 7.8E-07 63.9 6.8 73 57-135 13-88 (764)
94 COG2015 Alkyl sulfatase and re 95.1 0.027 5.8E-07 62.3 5.0 70 514-596 130-205 (655)
95 COG5212 PDE1 Low-affinity cAMP 94.4 0.073 1.6E-06 54.9 5.8 51 91-148 111-161 (356)
96 COG2220 Predicted Zn-dependent 94.1 0.35 7.6E-06 51.5 10.8 140 43-218 6-153 (258)
97 COG0426 FpaA Uncharacterized f 94.1 0.11 2.3E-06 57.6 6.7 74 58-139 35-112 (388)
98 KOG0814 Glyoxylase [General fu 93.9 0.26 5.6E-06 47.5 8.1 44 519-570 31-77 (237)
99 COG2015 Alkyl sulfatase and re 88.1 1 2.2E-05 50.4 6.3 76 59-137 126-206 (655)
100 KOG3592 Microtubule-associated 82.4 0.76 1.7E-05 53.5 2.1 62 46-115 40-104 (934)
101 KOG3592 Microtubule-associated 80.8 1.8 3.8E-05 50.7 4.3 62 494-573 40-104 (934)
102 COG2248 Predicted hydrolase (m 70.1 3.2 7E-05 42.8 2.5 68 44-113 1-87 (304)
103 PF14597 Lactamase_B_5: Metall 69.3 8.6 0.00019 38.0 5.0 64 511-594 24-87 (199)
104 KOG1361 Predicted hydrolase in 62.1 12 0.00027 42.8 5.3 84 92-216 112-195 (481)
105 PF07521 RMMBL: RNA-metabolisi 57.4 14 0.0003 27.4 3.3 27 770-796 15-41 (43)
106 KOG2781 U3 small nucleolar rib 44.3 1.2E+02 0.0025 31.5 8.3 117 728-854 82-218 (290)
107 KOG4736 Uncharacterized conser 42.0 28 0.0006 37.1 3.7 48 60-110 96-143 (302)
108 PF01073 3Beta_HSD: 3-beta hyd 41.0 55 0.0012 35.2 6.1 63 732-794 49-115 (280)
109 KOG4736 Uncharacterized conser 39.3 27 0.00059 37.2 3.2 47 512-568 97-143 (302)
110 KOG0814 Glyoxylase [General fu 27.3 48 0.001 32.5 2.4 45 67-115 31-79 (237)
111 COG0846 SIR2 NAD-dependent pro 26.7 1.4E+02 0.003 31.5 6.0 77 702-802 146-225 (250)
112 COG1086 Predicted nucleoside-d 25.6 1.4E+02 0.003 35.2 6.1 68 728-795 302-376 (588)
113 PLN02214 cinnamoyl-CoA reducta 25.3 1.2E+02 0.0026 33.6 5.6 62 732-793 64-125 (342)
114 KOG1502 Flavonol reductase/cin 24.2 1.1E+02 0.0024 33.5 4.9 65 730-794 59-128 (327)
115 PF14597 Lactamase_B_5: Metall 21.4 1.3E+02 0.0027 30.1 4.1 64 60-134 24-87 (199)
116 COG1087 GalE UDP-glucose 4-epi 21.1 1.7E+02 0.0036 31.8 5.3 85 238-343 19-119 (329)
No 1
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=100.00 E-value=5.7e-117 Score=981.84 Aligned_cols=733 Identities=48% Similarity=0.774 Sum_probs=588.9
Q ss_pred ccccccccccccCCCccchhhhHHHhhhhccCCCCCeeEEEEEeeCCCCCCCCcEEEEEeCCcEEEEEcChhHHHHHHHc
Q 002976 7 ESSFGFNKRRAEGRDKDVHDKKKLQLKVRKLNPINTLSYVQILGTGMDTQDTSPSVLLFFDNQRFIFNAGEGLQRFCTEH 86 (861)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LGtgs~~~~~~~slll~~~~~~yLfD~GeGtqr~l~~~ 86 (861)
--||++|+||+.|-++-.+.+..+..+..+-+|.|+.++++|+|+|.++.++..++++..+.++|+|+||||+||.+.++
T Consensus 12 s~s~~~~~~~~~~~d~~~~~~~~l~~~~~s~~~~~~~~~~~I~~~~~dt~~s~~~~~~~~~~~~~~~n~Geg~qr~~~eh 91 (746)
T KOG2121|consen 12 SISFAFNPRRAPGFDSVRRAKASLKRGAQSLNPTNTIRYLQISGSGMDTQDSPLSVYLFDDRKRFIFNCGEGTQRLLTEH 91 (746)
T ss_pred hhhhccCcccccCcchhhhhhhhcccccccCCCCceEEEEEEecCcccccccchhhhhhcchhhhhhhhhHHHHHHHHHh
Confidence 35799999999999999999999999999999999999999999997776677778888899999999999999999999
Q ss_pred CCCcCCCCEEEECcCCcCccCcHHHHHHHHhccCCCCCcEEEEcCccHHHHHHHHHhhcccCceeeeeecCCCCCCCCcC
Q 002976 87 KIKLSKVDHIFLSRVCSETAGGLPGLLLTLAGIGDEGLSVNVWGPSDLKYLVDAMKSFIPHAAMVHTHCFGPAPSSDASL 166 (861)
Q Consensus 87 ~i~~~ki~~IFiTH~H~DHi~GLpgll~t~~~~~~~~~~l~IyGP~gl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (861)
+++.++++.||+|..+|+.+||||||++|+++.|..+ ++.+|||+.+..++.+++.|+.+.++.....+..+ ..+
T Consensus 92 k~~~sk~~~iflt~~~w~~~GglpGl~ltl~~~G~~g-~~~l~gP~~l~~~l~~mr~f~~r~~~~l~~~~~~s----~~~ 166 (746)
T KOG2121|consen 92 KIKLSKLDSIFLTRVCWSSCGGLPGLLLTLADIGEPG-PVVLHGPSDLNYILSAMRYFVPRSGMVLTLSIDPS----AEL 166 (746)
T ss_pred hhhhhhhhheEeecccHHHhCCCccceeehhhcCCCC-cccccCchhHHHHHHHHHHhhccCCceeecccCCc----cch
Confidence 9999999999999999999999999999999999775 78899999999999999999988776444333321 011
Q ss_pred CCCccCCCceeEeeCCcEEEEEEEcCCCCCCCCCCCCCCCeeEEEEEeCCccCCCCHHHHHHcCCCCChhhhhhcCCCcE
Q 002976 167 PDSAKSANHIILVDNELAKISAILLKPSCSDGSPVKPGETSVIYVCELPEITGKFDPKKAVALGLKPGPKYRELQSGKSV 246 (861)
Q Consensus 167 ~~~~~~~~~~~~~~d~~i~V~~~~l~h~~~~~~~~~~~~~s~gY~~~~~~~~gkf~~~ka~~lGv~~g~~~~~L~~G~~V 246 (861)
++.....++...++++..++.++.+.+..............+.|+|+.++.+|+|+++||+++|||+||.+++|++|++|
T Consensus 167 ~~~~~~~~~~~~~~~~v~k~s~~~l~~~~~~~~sg~~~~~~~~y~~~~~~~~G~f~~~kA~~lGvp~Gp~~~~L~~G~~v 246 (746)
T KOG2121|consen 167 YNLSEPVRPCVLFSDEVLKISAINLSPPESPTDSGVKRELVVNYICQLHPIRGKFDVEKAKELGVPKGPLIGKLKSGESV 246 (746)
T ss_pred hhcccCcccccccCccchhhheeecCCcccCCccCChhhheeEEEEecccCCCcccHHHHHHhCCCCCcchhhhcCCCce
Confidence 11000113345677888888888887653221111112467899999999999999999999999999999999999999
Q ss_pred EeCCCceeecCCCccCCCCCCCEEEEEcCCChhHHHHHhhhhccccccccCCCCcccCCceeEEEEeCCCCCCCChHHHH
Q 002976 247 KSDTLDIMVHPSDVLGPSLPGPLVLLVDCPTESHVLELLSAESLNSYYADFSGDPQCAKTVNCIIHLSPVSVTGTSNYQK 326 (861)
Q Consensus 247 ~l~dg~~~v~p~~v~~~~~~g~~~~ilD~p~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~H~~~~~v~~~~~y~~ 326 (861)
++++|++ +.+.||+||+.||..|+|+|||++.|+++++++.....|.... . ..+.|++|++|.+|+.+++|+.
T Consensus 247 t~~~g~i-~~~~ev~gp~~~~~~f~il~cp~e~~l~~i~~~~~~~~y~~~~----~--~~V~civh~~p~~v~~~~~y~~ 319 (746)
T KOG2121|consen 247 TLDDGTI-VVPSEVVGPSRPGASFLILDCPDESYLNAILENIKKHKYSGLP----D--EPVACIVHITPASVYSSDRYQS 319 (746)
T ss_pred eccCCcE-EehhhhcCCCCCccEEEEecCCcHHHHHHHHhccchhhhccCC----C--cceeEEEEEcccceeccHHHHh
Confidence 9999986 6669999999999999999999999999999987665553311 1 3589999999999999999999
Q ss_pred HHHHcCCC-ceEEeCCCCCCcccccccchHHHHHHHhhhCCCCCCCCCCCCCCCCCCccccCCCCCCCCCceecccceEE
Q 002976 327 WMKRFGSA-QHIMAGHEMKNVEIPILKSSARITTRLNYLCPQLFPASGFWSLPHFNTSAAESSASEGPVPSICAENLLKF 405 (861)
Q Consensus 327 ~~~~~~~~-~Hi~~~~~~~~~~~~~~~~s~~~~~~L~~~~p~~Fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (861)
||++|++. ||+++++++ +..+.+.++++++++||.++|.+||.+.+|..+....... .+ ...+.++|
T Consensus 320 ~~~~f~s~~qH~~~~~~~--~~~~~~~~~~~~~~~ln~l~p~~Fpl~~~f~~~~s~~~~~--~~--------~~~~~~k~ 387 (746)
T KOG2121|consen 320 WMEKFYSEAQHIILSEEN--AAFPNLRASHRIQAQLNLLLPQVFPLLGSFDVKLSGLGIQ--IP--------SPSNLLKY 387 (746)
T ss_pred hHhhccchhhhhhhcccc--ccccccccHHHHHHhhcccCchhccCcccceeeccCCccc--cc--------CCccccee
Confidence 99999766 999999874 3457889999999999999999999998776543222111 11 12336799
Q ss_pred EeccCcccCCCCCCCCCCCChhHHHHHhhhcChhHHHHHHHHHHhhcCCCcccCCCCCcchhhhhhhcccccCCCCcccc
Q 002976 406 TLRPLANLGIDRTNIPSLEAPSEITNELLSEVPEVVDAAHQISQFWQGPRELKDDCPMLDNEVMIEESWLDENRLPNCLD 485 (861)
Q Consensus 406 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (861)
+|+|.. |+|...+- +..+...+-.++.+.... +...+++.++....+|.+.+
T Consensus 388 ~Lrp~~--g~d~~~~~---~~pe~~~~~~~~~~~~~~-----------------------~~~~i~k~~~~~~~~P~~~e 439 (746)
T KOG2121|consen 388 VLRPEG--GIDDEVLF---DIPEEKSEELKQSPNKQK-----------------------RSTKIQKYHLSGDHFPNFAE 439 (746)
T ss_pred EeeccC--CCCcceee---cCchhhhhhhccCcchhc-----------------------chhhhhhhhccCCCCCCccc
Confidence 999986 66622110 111111111111111110 01122233333344565443
Q ss_pred ccCCCccEEEEEecCCCCCCCCCCccEEEEEEeCCceEEEeCCcchHHHHHHHhCccchhhhhccccEEEEeccchhhhc
Q 002976 486 NVRRDDLEIVLLGTGSSQPSKYRNVSSIYVNLFSKGSLLLDCGEGTLGQLKRRYGVEGADSAVRKLRCIWISHIHADHHA 565 (861)
Q Consensus 486 ~~~~~~~~i~fLGTGsa~Ps~~Rn~Ss~ll~~~~~~~iLlDcGegt~~qL~r~~g~~~~~~~l~~i~~IfISH~H~DH~~ 565 (861)
.++++|+||||||++|+||||+|+++|+++...+||+||||||++||.|+||.+..+..++++++|||||+|+|||+
T Consensus 440 ---~~~~eIi~LGTGSaiPskyRNVSS~lv~i~~~~~IlLDCGEgTlgql~R~YG~~~~~~~lr~LraI~ISHlHADHh~ 516 (746)
T KOG2121|consen 440 ---KKDPEIIFLGTGSAIPSKYRNVSSILVRIDSDDSILLDCGEGTLGQLVRHYGVENVDTALRKLRAIFISHLHADHHL 516 (746)
T ss_pred ---cCCcEEEEecCCccCCCcccceEEEEEeccCCccEEeecCCchHHHHHHHhhhcchHHHHHhHHHHHHHhhcccccc
Confidence 37899999999999999999999999999777789999999999999999998888899999999999999999999
Q ss_pred cHHHHHHHHHHhhcCCCCCCeEEEeCchHHHHHHHHHhcccccceeeecccccccccccccCCCCCcccCCCCCCCCCcc
Q 002976 566 GLARILALRRDLLKGVPHEPLLVVGPGPLKRYLDAYERLEDLDMQFLHCRYTREASWNDFEGNGEPVKNLSTPGSPFSTE 645 (861)
Q Consensus 566 GL~~ll~~~~~~~~g~~~~pl~I~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 645 (861)
||+.+|+.|.++.+|....|+.|++|+.+..||++|...... ....|.... .|+.
T Consensus 517 Gl~~vL~~r~k~~k~~~~~pl~vv~P~ql~~wl~~y~~~~~~----------~~~~~~~i~----------~~g~----- 571 (746)
T KOG2121|consen 517 GLISVLQARTKLLKGVENSPLLVVAPRQLKKWLQEYHRCPSF----------PASSVAKIG----------APGA----- 571 (746)
T ss_pred cHHHHHHHHHHhccccccCceEEeChHHHHHHHHHHhcCccc----------chhhhhhhc----------Cchh-----
Confidence 999999999998887667899999999999999999743221 111111110 0000
Q ss_pred ccccccchhhhcccccccccccCCCCCCCCCcchhhhHhHHHHHHHcCCceeeEEeeccCCCCceEEEeccccccccCcc
Q 002976 646 GLINKTEANLFAKGSCMQSVWKGPGIPVDNNAAFPLLKNLKNVLNEAGLETLISFPVVHCPQAFGFALKAAERINSVGKV 725 (861)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lg~~~i~~~pv~H~~~a~G~~i~~~~~~~~~~~~ 725 (861)
.|... .|. .+.+ ..+..++.++|+..|.++||.||.++||..|+..
T Consensus 572 ---------lf~~~--------s~~------s~~~--~~~~~~l~~~~l~~i~tc~viHCp~syg~~i~~~--------- 617 (746)
T KOG2121|consen 572 ---------LFAQK--------SPD------SVPE--RLLSYLLRELGLESIQTCPVIHCPQSYGCSITHG--------- 617 (746)
T ss_pred ---------hhhcc--------Ccc------ccch--hhhhHHHHhcCceeEEecCcEecChhhceeEecc---------
Confidence 00000 010 0000 1355677889999999999999999999999983
Q ss_pred cCCcEEEEeCCCCCChhHHhhcCCCcEEEEeccCCCChHHHHHhcCCCCHHHHHHHHHHcCCCEEEEeeccCCCCCCccc
Q 002976 726 IPGWKIVYSGDTRPCPELVEASRGATVLIHEATFEDGMMEEAIAKNHSTTKEAIDVGSSAGVYRIILTHFSQRYPKIPVV 805 (861)
Q Consensus 726 ~~G~ki~YsGDT~p~~~l~~~~~~aDlLIhEaTf~d~~~~~a~~~~HsT~~eA~~va~~~~ak~lvLtHfS~Ry~~~~~~ 805 (861)
.||||+||||||||+.+++++++||||||||||+|+++++|..++|||++||+.+++.|+||++|||||||||++.|..
T Consensus 618 -~~~Ki~YSGDTrP~~~~v~~g~datlLIHEAT~ED~l~EeAv~k~HST~sEAi~V~~~m~ar~liLTHFSQRY~K~pl~ 696 (746)
T KOG2121|consen 618 -SGWKIVYSGDTRPCEDLVKAGKDATLLIHEATLEDDLEEEAVEKGHSTTSEAISVAKKMNAKRLILTHFSQRYPKVPLP 696 (746)
T ss_pred -cceEEEEcCCCCCchhHhhhccCCceEEeehhhchhHHHHHHHhCCCCHHHHHHHHHhccchhhhhhhhhcccCCCCCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999944
Q ss_pred ccccCCceEEeeeCcEEecCCCCCCcchhHHHHHhhcccCCCCCchhhh
Q 002976 806 DETHMHKTCIAFDLMSINLADLPILPKVLPYFKLLFKDEMPVDESDDVV 854 (861)
Q Consensus 806 ~~~~~~~v~~A~D~m~i~l~~~~~~~~~~~~l~~lf~~~~~~~~~~~~~ 854 (861)
.+....++++|||+|.|...|+..++++.|+++.+|.++.+|||+++++
T Consensus 697 ~d~~~~~~~~afd~m~v~~~D~~~~~~~~p~l~~~f~e~~~e~E~~~~~ 745 (746)
T KOG2121|consen 697 SDGEMDPVCVAFDKMAVSVADLQEVPKFEPYLKALFAEEKEEEEERDEK 745 (746)
T ss_pred CccccchHHHhhhcceeeccccchhhhhhhHHHHHhhhhhhhhhhhhcc
Confidence 5555667999999999999999999999999999999999999998875
No 2
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=100.00 E-value=4.9e-44 Score=383.14 Aligned_cols=282 Identities=36% Similarity=0.526 Sum_probs=200.5
Q ss_pred ccEEEEEecCCCCCCCCCCccEEEEEEeCCceEEEeCCcchHHHHHHHhCccchhhhhccccEEEEeccchhhhccHHHH
Q 002976 491 DLEIVLLGTGSSQPSKYRNVSSIYVNLFSKGSLLLDCGEGTLGQLKRRYGVEGADSAVRKLRCIWISHIHADHHAGLARI 570 (861)
Q Consensus 491 ~~~i~fLGTGsa~Ps~~Rn~Ss~ll~~~~~~~iLlDcGegt~~qL~r~~g~~~~~~~l~~i~~IfISH~H~DH~~GL~~l 570 (861)
+|+|+||||||++|++.||+++++|+. ++..+|||||||++.||.+ .+. .+.+|++|||||+|+||++||+.|
T Consensus 1 ~m~i~fLGtg~~~Pt~~r~~~s~ll~~-~~~~~L~DcGeGt~~~l~~-~~~-----~~~~i~~IfITH~H~DHi~gL~~l 73 (292)
T COG1234 1 MMEITFLGTGGAVPTKDRNVSSILLRL-EGEKFLFDCGEGTQHQLLR-AGL-----PPRKIDAIFITHLHGDHIAGLPGL 73 (292)
T ss_pred CcEEEEEecCCCCCcCccccceeEEEe-CCeeEEEECCHhHHHHHHH-hcC-----ChhhccEEEeeccccchhcCcHHH
Confidence 489999999999999999999999998 8889999999999999998 554 256899999999999999999999
Q ss_pred HHHHHHhhcCCCCCCeEEEeCchHHHHHHHHHhcccccceeeecccccccccccccCCCCCcccCCCCCCCCCccccccc
Q 002976 571 LALRRDLLKGVPHEPLLVVGPGPLKRYLDAYERLEDLDMQFLHCRYTREASWNDFEGNGEPVKNLSTPGSPFSTEGLINK 650 (861)
Q Consensus 571 l~~~~~~~~g~~~~pl~I~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 650 (861)
+..++. .+. ..|+.||+|++..+++.....+......+........ . ..+ .. ....
T Consensus 74 l~~~~~--~~~-~~~l~iygP~g~~~~~~~~~~~~~~~~~~~i~~~e~~-~-~~~-----------------~v--~~~~ 129 (292)
T COG1234 74 LVSRSF--RGR-REPLKIYGPPGIKEFVETSLRLSYSKLTYEIIGHEIE-E-DAF-----------------EV--EALE 129 (292)
T ss_pred HHHhhc--cCC-CCceeEECCcchhhhhhhhhhhcccccceEEEEEEec-c-Cce-----------------EE--EEEe
Confidence 988853 233 3589999999999999888765433222210000000 0 000 00 0000
Q ss_pred cchhhhcccccccccccCCCCCCCCCcchhhhHhHHHHHHHc-CCceeeEEeeccC----CCCceEEEeccccccccCcc
Q 002976 651 TEANLFAKGSCMQSVWKGPGIPVDNNAAFPLLKNLKNVLNEA-GLETLISFPVVHC----PQAFGFALKAAERINSVGKV 725 (861)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l-g~~~i~~~pv~H~----~~a~G~~i~~~~~~~~~~~~ 725 (861)
+++...+.++.+..-. .++. + ...+++ .+ .+..++.+++.|+ ..++++++.. .
T Consensus 130 ~~h~~~~~~y~~~e~~-~~~~-~-------~~~~~~----~~~~g~~~~~l~~~h~~~~~~~~~~~~~~~---------~ 187 (292)
T COG1234 130 LDHGVPALGYRIEEPD-RPGR-F-------DAEKLK----GLPPGPLITALKAGHPVEERVITPADRIGE---------P 187 (292)
T ss_pred cCCCccccceeeecCC-CcCc-C-------CHHHhc----CCCCchHHHHHhCCCceeeeecCHHHhccc---------c
Confidence 1111111111111000 0000 0 001111 11 1456778888888 4555555544 2
Q ss_pred cCCcEEEEeCCCCCChhHHhhcCCCcEEEEeccCCCChHHHHHhcCCCCHHHHHHHHHHcCCCEEEEeeccCCCC-CCcc
Q 002976 726 IPGWKIVYSGDTRPCPELVEASRGATVLIHEATFEDGMMEEAIAKNHSTTKEAIDVGSSAGVYRIILTHFSQRYP-KIPV 804 (861)
Q Consensus 726 ~~G~ki~YsGDT~p~~~l~~~~~~aDlLIhEaTf~d~~~~~a~~~~HsT~~eA~~va~~~~ak~lvLtHfS~Ry~-~~~~ 804 (861)
..|++|+|||||+||++++++++|||||||||||.++..+.|...+|||.+||+++|+++++|+|+|||||+||+ ....
T Consensus 188 ~~G~~v~ysGDT~p~~~~~~~a~~aDlLiHEat~~~~~~~~a~~~~HsT~~eAa~iA~~A~vk~LiLtH~s~ry~~~~~~ 267 (292)
T COG1234 188 RKGKSVVYSGDTRPCDELIDLAKGADLLIHEATFEDDLEDLANEGGHSTAEEAAEIAKEAGVKKLILTHFSPRYPKDDEE 267 (292)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCCCEEEEeccCCchhhhHHhhcCCCCHHHHHHHHHHcCCCeEEEEeecccccchHHH
Confidence 367999999999999999999999999999999999888777777799999999999999999999999999998 2222
Q ss_pred -ccc---ccCCceEEeeeCcEEecC
Q 002976 805 -VDE---THMHKTCIAFDLMSINLA 825 (861)
Q Consensus 805 -~~~---~~~~~v~~A~D~m~i~l~ 825 (861)
+.+ .+..++.+|.|+|++++.
T Consensus 268 ~~~ea~~~f~~~~~~a~D~~~~~v~ 292 (292)
T COG1234 268 LLKEARAIFPGETIVARDGLVFEVP 292 (292)
T ss_pred HHHHHHHhCCCceEEeccceEEecC
Confidence 222 233359999999999874
No 3
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=100.00 E-value=2.6e-41 Score=368.13 Aligned_cols=256 Identities=32% Similarity=0.602 Sum_probs=197.7
Q ss_pred EEEEecCCCCCCCCCCccEEEEEEeC---CceEEEeCCcchHHHHHHHhCccchhhhhccccEEEEeccchhhhccHHHH
Q 002976 494 IVLLGTGSSQPSKYRNVSSIYVNLFS---KGSLLLDCGEGTLGQLKRRYGVEGADSAVRKLRCIWISHIHADHHAGLARI 570 (861)
Q Consensus 494 i~fLGTGsa~Ps~~Rn~Ss~ll~~~~---~~~iLlDcGegt~~qL~r~~g~~~~~~~l~~i~~IfISH~H~DH~~GL~~l 570 (861)
|+||||||++|+++||+||++|+..+ +..+|||||+|++.||.+ .+. .+.+|++|||||.|+||+.||+.|
T Consensus 1 ~~~LGt~~~~p~~~r~~s~~lv~~~~~~~~~~iLiD~G~g~~~~l~~-~~i-----~~~~id~IfiTH~H~DHi~Gl~~l 74 (303)
T TIGR02649 1 LIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQHQLLH-TAF-----NPGKLDKIFISHLHGDHLFGLPGL 74 (303)
T ss_pred CEEEecCCCCCCCCCCccEEEEEccCCCCCCEEEEECCccHHHHHHH-hCC-----CHHHCcEEEEeCCChhhcCCHHHH
Confidence 58999999999999999999998743 368999999999999887 454 268999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCeEEEeCchHHHHHHHHHhcccccceeeecccccccccccccCCCCCcccCCCCCCCCCccccccc
Q 002976 571 LALRRDLLKGVPHEPLLVVGPGPLKRYLDAYERLEDLDMQFLHCRYTREASWNDFEGNGEPVKNLSTPGSPFSTEGLINK 650 (861)
Q Consensus 571 l~~~~~~~~g~~~~pl~I~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 650 (861)
+..+.. .+ ..+++.||||+++.++++.+...... |..+ +..
T Consensus 75 l~~~~~--~~-~~~~l~Iygp~~~~~~l~~~~~~~~~--------------~~~~---------------~~~------- 115 (303)
T TIGR02649 75 LCSRSM--SG-IIQPLTIYGPQGIREFVETALRISGS--------------WTDY---------------PLE------- 115 (303)
T ss_pred HHHHHh--cC-CCCCeEEEechhHHHHHHHHHHhccc--------------ccCC---------------ceE-------
Confidence 876542 23 34789999999998888765432110 0000 000
Q ss_pred cchhhhcccccccccccCCCCCCCCCcchhhhHhHHHHHHHcCCceeeEEeeccCCCCceEEEeccccc-----------
Q 002976 651 TEANLFAKGSCMQSVWKGPGIPVDNNAAFPLLKNLKNVLNEAGLETLISFPVVHCPQAFGFALKAAERI----------- 719 (861)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lg~~~i~~~pv~H~~~a~G~~i~~~~~~----------- 719 (861)
+..+ .++.. ...+.++|+++|+.|..+++||+|+.....
T Consensus 116 -----------~~~i--~~~~~-----------------~~~~~~~v~~~~~~H~~~~~gy~i~~~~~~g~~~~~kl~~l 165 (303)
T TIGR02649 116 -----------IVEI--GAGEI-----------------LDDGLRKVTAYPLEHPLECYGYRIEEHDKPGALNAQALKAA 165 (303)
T ss_pred -----------EEEc--CCCce-----------------EecCCeEEEEEEccCccceEEEEEeccCCcCCCCHHHHHHC
Confidence 0000 01111 124567899999999999999999863210
Q ss_pred ----------------------------cccCcccCCcEEEEeCCCCCChhHHhhcCCCcEEEEeccCCCChHHHHHhcC
Q 002976 720 ----------------------------NSVGKVIPGWKIVYSGDTRPCPELVEASRGATVLIHEATFEDGMMEEAIAKN 771 (861)
Q Consensus 720 ----------------------------~~~~~~~~G~ki~YsGDT~p~~~l~~~~~~aDlLIhEaTf~d~~~~~a~~~~ 771 (861)
+..++..+|++|+|+|||+|++.+++++++||+|||||||.+++.+.|..++
T Consensus 166 gi~~g~~~~~L~~g~~v~~~dg~~~~~~~~~~~~~~g~~i~y~gDt~~~~~~~~~~~~adlLi~Eat~~~~~~~~a~~~~ 245 (303)
T TIGR02649 166 GVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPCDAALDLAKGVDVMVHEATLDITMEAKANSRG 245 (303)
T ss_pred CCCCChHHHHhcCCCeEEeCCCcEEcHHHeeCCCCCCcEEEEecCCCChHHHHHHhcCCCEEEEeccCChhhHHHHhhcC
Confidence 0112223688999999999999999999999999999999998888888999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEeeccCCCCCCc--c-ccc--ccCCceEEeeeCcEEec
Q 002976 772 HSTTKEAIDVGSSAGVYRIILTHFSQRYPKIP--V-VDE--THMHKTCIAFDLMSINL 824 (861)
Q Consensus 772 HsT~~eA~~va~~~~ak~lvLtHfS~Ry~~~~--~-~~~--~~~~~v~~A~D~m~i~l 824 (861)
|+|++||+++|+++++|+++|||||+||++.. . +.+ ...+++.+|.|||++.+
T Consensus 246 H~t~~~a~~~a~~~~~k~lvL~H~s~~y~~~~~~~~~~~~~~~~~~~~~a~d~~~~~~ 303 (303)
T TIGR02649 246 HSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRECRSIFPATELANDFTVFNV 303 (303)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEEeccccCCccHHHHHHHHHHHCCCCEecccccEEeC
Confidence 99999999999999999999999999998642 1 222 23457899999999874
No 4
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=100.00 E-value=9.2e-40 Score=356.34 Aligned_cols=257 Identities=35% Similarity=0.577 Sum_probs=198.4
Q ss_pred EEEEEecCCCCCCCCCCccEEEEEEeCCceEEEeCCcchHHHHHHHhCccchhhhhccccEEEEeccchhhhccHHHHHH
Q 002976 493 EIVLLGTGSSQPSKYRNVSSIYVNLFSKGSLLLDCGEGTLGQLKRRYGVEGADSAVRKLRCIWISHIHADHHAGLARILA 572 (861)
Q Consensus 493 ~i~fLGTGsa~Ps~~Rn~Ss~ll~~~~~~~iLlDcGegt~~qL~r~~g~~~~~~~l~~i~~IfISH~H~DH~~GL~~ll~ 572 (861)
+|+||||||+.|++.|+++|++|+. ++..||||||+|++.||.+ .+. .+.++++|||||.|.||+.||+.++.
T Consensus 1 ~~~~lGtg~~~p~~~r~~~~~~v~~-~~~~iLiD~G~g~~~~l~~-~~~-----~~~~i~~IfiTH~H~DH~~Gl~~l~~ 73 (299)
T TIGR02651 1 EITFLGTGGGVPTKERNLPSIALKL-NGELWLFDCGEGTQRQMLR-SGI-----SPMKIDRIFITHLHGDHILGLPGLLS 73 (299)
T ss_pred CEEEEeCCCCCCCCCCCCceEEEEE-CCeEEEEECCHHHHHHHHH-cCC-----CHHHCcEEEEECCchhhhcChHHHHH
Confidence 5899999999999999999999998 6789999999999999987 454 25789999999999999999999987
Q ss_pred HHHHhhcCCCCCCeEEEeCchHHHHHHHHHhcccccceeeecccccccccccccCCCCCcccCCCCCCCCCccccccccc
Q 002976 573 LRRDLLKGVPHEPLLVVGPGPLKRYLDAYERLEDLDMQFLHCRYTREASWNDFEGNGEPVKNLSTPGSPFSTEGLINKTE 652 (861)
Q Consensus 573 ~~~~~~~g~~~~pl~I~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 652 (861)
.+.. .+ +..++.||+|+.+.++++...........+. + .
T Consensus 74 ~~~~--~~-~~~~i~Iy~p~~~~~~l~~~~~~~~~~~~~~-----------------------------~---------~ 112 (299)
T TIGR02651 74 TMSF--QG-RKEPLTIYGPPGIKEFIETSLRVSYTYLNYP-----------------------------I---------K 112 (299)
T ss_pred hhcc--CC-CCceEEEECCccHHHHHHHHHHHcccCCCce-----------------------------E---------E
Confidence 6532 12 3468999999999988876543211000000 0 0
Q ss_pred hhhhcccccccccccCCCCCCCCCcchhhhHhHHHHHHHcCCceeeEEeeccCCCCceEEEeccccc-------------
Q 002976 653 ANLFAKGSCMQSVWKGPGIPVDNNAAFPLLKNLKNVLNEAGLETLISFPVVHCPQAFGFALKAAERI------------- 719 (861)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lg~~~i~~~pv~H~~~a~G~~i~~~~~~------------- 719 (861)
+..+ .++.. ....+.++|+++++.|..+++||+|+....-
T Consensus 113 ---------~~~~--~~~~~----------------~~~~~~~~v~~~~~~H~~~~~gy~i~~~~~~~~~~~~k~~~~~l 165 (299)
T TIGR02651 113 ---------IHEI--EEGGL----------------VFEDDGFKVEAFPLDHSIPSLGYRFEEKDRPGKFDREKAKELGI 165 (299)
T ss_pred ---------EEEc--cCCCc----------------eEecCCEEEEEEEcCCCCceEEEEEEECCCCCCcCHHHHHHCCC
Confidence 0000 01110 0134668999999999989999999863210
Q ss_pred --------------------------cccCcccCCcEEEEeCCCCCChhHHhhcCCCcEEEEeccCCCChHHHHHhcCCC
Q 002976 720 --------------------------NSVGKVIPGWKIVYSGDTRPCPELVEASRGATVLIHEATFEDGMMEEAIAKNHS 773 (861)
Q Consensus 720 --------------------------~~~~~~~~G~ki~YsGDT~p~~~l~~~~~~aDlLIhEaTf~d~~~~~a~~~~Hs 773 (861)
+.++...+|++|+|+|||++++.++++++++|+|||||||.++..+.|..++|+
T Consensus 166 ~~g~~~~~L~~g~~v~~~~G~~~~~~~~~~~~~~g~~i~y~gDt~~~~~~~~~~~~~dlLi~E~~~~~~~~~~~~~~~H~ 245 (299)
T TIGR02651 166 PPGPLYGKLKRGETVTLIDGRIIDPEDVLGPPRKGRKIAYTGDTRPCEEVIEFAKNADLLIHEATFLDEDKKLAKEYGHS 245 (299)
T ss_pred CcchhHHHhhCCCeEEeCCCeEEeHHHcccCCcCCcEEEEecCCCChHHHHHHHcCCCEEEEECCCCchhHHHHhhcCCC
Confidence 011112257899999999999999999999999999999999887778889999
Q ss_pred CHHHHHHHHHHcCCCEEEEeeccCCCCCCccc-c--cccCCceEEeeeCcEEec
Q 002976 774 TTKEAIDVGSSAGVYRIILTHFSQRYPKIPVV-D--ETHMHKTCIAFDLMSINL 824 (861)
Q Consensus 774 T~~eA~~va~~~~ak~lvLtHfS~Ry~~~~~~-~--~~~~~~v~~A~D~m~i~l 824 (861)
|++||+++++++++|+++|||||+||++...+ . ....+++.+|+|||++.+
T Consensus 246 t~~~a~~~~~~~~~k~lvltH~s~~~~~~~~~~~~~~~~~~~~~~a~dg~~~~~ 299 (299)
T TIGR02651 246 TAAQAAEIAKEANVKRLILTHISPRYSDEEELLEEAKKIFPNTYIAEDFMEIEI 299 (299)
T ss_pred CHHHHHHHHHHcCCCEEEEEecccccCChHHHHHHHHHhCCCcEEccCccEeeC
Confidence 99999999999999999999999999874322 1 123568999999999975
No 5
>PRK00055 ribonuclease Z; Reviewed
Probab=100.00 E-value=2.4e-35 Score=316.97 Aligned_cols=260 Identities=38% Similarity=0.576 Sum_probs=187.4
Q ss_pred ccEEEEEecCCCCCCCCCCccEEEEEEeCCceEEEeCCcchHHHHHHHhCccchhhhhccccEEEEeccchhhhccHHHH
Q 002976 491 DLEIVLLGTGSSQPSKYRNVSSIYVNLFSKGSLLLDCGEGTLGQLKRRYGVEGADSAVRKLRCIWISHIHADHHAGLARI 570 (861)
Q Consensus 491 ~~~i~fLGTGsa~Ps~~Rn~Ss~ll~~~~~~~iLlDcGegt~~qL~r~~g~~~~~~~l~~i~~IfISH~H~DH~~GL~~l 570 (861)
+|+|+||||||+.|++.|+++|++|+. ++..+|||||+|+..++.+ .+. .+.+|++|||||.|.||+.||+.+
T Consensus 1 ~m~i~~LGsg~~~~~~~r~~~~~li~~-~~~~iLiD~G~g~~~~l~~-~~~-----~~~~i~~i~lTH~H~DHi~Gl~~l 73 (270)
T PRK00055 1 MMELTFLGTGSGVPTPTRNVSSILLRL-GGELFLFDCGEGTQRQLLK-TGI-----KPRKIDKIFITHLHGDHIFGLPGL 73 (270)
T ss_pred CeEEEEEecCCCCCcCCCCCCEEEEEE-CCcEEEEECCHHHHHHHHH-cCC-----CHHHCCEEEEeCCCchhhCcHHHH
Confidence 489999999999999999999999998 6789999999999998887 443 357899999999999999999999
Q ss_pred HHHHHHhhcCCCCCCeEEEeCchHHHHHHHHHhccc-ccceeeecccccccccccccCCCCCcccCCCCCCCCCcccccc
Q 002976 571 LALRRDLLKGVPHEPLLVVGPGPLKRYLDAYERLED-LDMQFLHCRYTREASWNDFEGNGEPVKNLSTPGSPFSTEGLIN 649 (861)
Q Consensus 571 l~~~~~~~~g~~~~pl~I~~p~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 649 (861)
+..+.. .+ +.+++.||+|+++..+++....... .++.+.. .... ..+...
T Consensus 74 ~~~~~~--~~-~~~~l~iy~p~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-------------~~~~~~---- 124 (270)
T PRK00055 74 LSTRSL--SG-RTEPLTIYGPKGIKEFVETLLRASGSLGYRIAE---------KDKP-------------GKLDAE---- 124 (270)
T ss_pred HHHhhh--cC-CCceEEEECCccHHHHHHHHHHHhhceeEEEEE---------cCCC-------------CCCCHH----
Confidence 876532 12 3578999999999888876543221 1111100 0000 000000
Q ss_pred ccchhhhcccccccccccCCCCCCCCCcchhhhHhHHHHHHHcCCceeeEEeeccC--CCCceEEEeccccccccCcccC
Q 002976 650 KTEANLFAKGSCMQSVWKGPGIPVDNNAAFPLLKNLKNVLNEAGLETLISFPVVHC--PQAFGFALKAAERINSVGKVIP 727 (861)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lg~~~i~~~pv~H~--~~a~G~~i~~~~~~~~~~~~~~ 727 (861)
.. ....+ .++.. +.+ + ..| .++. ...|. .+++||+++. +
T Consensus 125 -----~~-~~~~~-----~~~~~------------~~~-~-~~g-~~~~--~~~~~~i~~~~~~~~~~-----------~ 165 (270)
T PRK00055 125 -----KL-KALGV-----PPGPL------------FGK-L-KRG-EDVT--LEDGRIINPADVLGPPR-----------K 165 (270)
T ss_pred -----HH-HHCCC-----CCCch------------HHH-h-hCC-CeEE--eCCCcEEeHHHeeccCC-----------C
Confidence 00 00000 00000 000 0 112 1222 12333 2688998876 7
Q ss_pred CcEEEEeCCCCCChhHHhhcCCCcEEEEeccCCCChHHHHHhcCCCCHHHHHHHHHHcCCCEEEEeeccCCCCC-Cccc-
Q 002976 728 GWKIVYSGDTRPCPELVEASRGATVLIHEATFEDGMMEEAIAKNHSTTKEAIDVGSSAGVYRIILTHFSQRYPK-IPVV- 805 (861)
Q Consensus 728 G~ki~YsGDT~p~~~l~~~~~~aDlLIhEaTf~d~~~~~a~~~~HsT~~eA~~va~~~~ak~lvLtHfS~Ry~~-~~~~- 805 (861)
|++|+|+|||++++.++++++++|+|||||||.++..+.+..++|+|++||+++++++++|+++|||||++|.. ...+
T Consensus 166 g~~~~y~~Dt~~~~~~~~~~~~~d~li~E~~~~~~~~~~~~~~~H~~~~~a~~~~~~~~~~~~vl~H~~~~~~~~~~~~~ 245 (270)
T PRK00055 166 GRKVAYCGDTRPCEALVELAKGADLLVHEATFGDEDEELAKEYGHSTARQAAEIAKEAGVKRLILTHFSPRYTGDPEELL 245 (270)
T ss_pred CcEEEEeCCCCCcHHHHHHhCCCCEEEEeccCCcchhhHHhhcCCCCHHHHHHHHHHcCCCEEEEEeeccccCCCHHHHH
Confidence 88999999999999999999999999999999988877788899999999999999999999999999999973 2111
Q ss_pred cc--ccCCceEEeeeCcEEecC
Q 002976 806 DE--THMHKTCIAFDLMSINLA 825 (861)
Q Consensus 806 ~~--~~~~~v~~A~D~m~i~l~ 825 (861)
++ ...+++.+|+|||+|.|.
T Consensus 246 ~~~~~~~~~v~~a~Dg~~i~l~ 267 (270)
T PRK00055 246 KEAREIFPNTELAEDLMRVEVP 267 (270)
T ss_pred HHHHHHcCCcEEccCCcEEEec
Confidence 11 123689999999999984
No 6
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=100.00 E-value=1e-33 Score=300.09 Aligned_cols=229 Identities=23% Similarity=0.344 Sum_probs=172.5
Q ss_pred cEEEEEecCCC------------------CCCCCCCccEEEEEEeCCceEEEeCCcchHHHHHHHhCccchhhhhccccE
Q 002976 492 LEIVLLGTGSS------------------QPSKYRNVSSIYVNLFSKGSLLLDCGEGTLGQLKRRYGVEGADSAVRKLRC 553 (861)
Q Consensus 492 ~~i~fLGTGsa------------------~Ps~~Rn~Ss~ll~~~~~~~iLlDcGegt~~qL~r~~g~~~~~~~l~~i~~ 553 (861)
|+|+|||||++ .|++.|+.+|++|+. ++..||||||.+.+ .+.+. ..+|++
T Consensus 1 m~~~~lGs~~~~~~p~~~c~c~~c~~~~~~p~~~r~~~s~li~~-~~~~iLiD~G~~~~---~~~~~-------~~~i~~ 69 (250)
T PRK11244 1 MRLTLLGTGGAQGVPVFGCECAACARARRDPAYRRRPCSALIEF-NGARTLIDAGLPDL---AERFP-------PGSLQQ 69 (250)
T ss_pred CEEEEEeccCCCCccCCCccchhhhhhhcCCCCCcceeEEEEEE-CCCEEEEECCChHH---hhcCC-------cccCCE
Confidence 79999999999 899999999999998 77799999997653 23232 378999
Q ss_pred EEEeccchhhhccHHHHHHHHHHhhcCCCCCCeEEEeCchHHHHHHHHHhcccccceeeecccccccccccccCCCCCcc
Q 002976 554 IWISHIHADHHAGLARILALRRDLLKGVPHEPLLVVGPGPLKRYLDAYERLEDLDMQFLHCRYTREASWNDFEGNGEPVK 633 (861)
Q Consensus 554 IfISH~H~DH~~GL~~ll~~~~~~~~g~~~~pl~I~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (861)
|||||.|.||+.|+..+... ...++.||+|.....+...+ .... ..++.
T Consensus 70 i~iTH~H~DHi~gl~~l~~~--------~~~~i~i~~~~~~~~~~~~~-~~~~-~~~~~--------------------- 118 (250)
T PRK11244 70 ILLTHYHMDHVQGLFPLRWG--------VGDPIPVYGPPDPEGCDDLF-KHPG-ILDFS--------------------- 118 (250)
T ss_pred EEEccCchhhhccHHHHHhh--------cCCceeEEeCCchhhHHHHh-cCcc-ccccc---------------------
Confidence 99999999999999876321 23689999999865332211 0000 00000
Q ss_pred cCCCCCCCCCccccccccchhhhcccccccccccCCCCCCCCCcchhhhHhHHHHHHHcCCceeeEEeeccCCCCceEEE
Q 002976 634 NLSTPGSPFSTEGLINKTEANLFAKGSCMQSVWKGPGIPVDNNAAFPLLKNLKNVLNEAGLETLISFPVVHCPQAFGFAL 713 (861)
Q Consensus 634 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lg~~~i~~~pv~H~~~a~G~~i 713 (861)
..+ .++.. ..+|.++|+++|+.|+.+++||+|
T Consensus 119 --------------------------~~l-----~~~~~-----------------~~~~~~~I~~~~~~H~~~s~g~~i 150 (250)
T PRK11244 119 --------------------------HPL-----EPFEP-----------------FDLGGLQVTPLPLNHSKLTFGYLL 150 (250)
T ss_pred --------------------------ccc-----CCCCC-----------------eeECCEEEEEEeeCCCcceeEEEE
Confidence 000 11111 136778999999999999999999
Q ss_pred eccccccccCcccCCcEEEEeCCCCCC-hhHHhhc--CCCcEEEEeccCCCChHHHHHhcCCCCHHHHHHHHHHcCCCEE
Q 002976 714 KAAERINSVGKVIPGWKIVYSGDTRPC-PELVEAS--RGATVLIHEATFEDGMMEEAIAKNHSTTKEAIDVGSSAGVYRI 790 (861)
Q Consensus 714 ~~~~~~~~~~~~~~G~ki~YsGDT~p~-~~l~~~~--~~aDlLIhEaTf~d~~~~~a~~~~HsT~~eA~~va~~~~ak~l 790 (861)
+. +|++|+|+|||.++ +.+.+.+ +++|+|||||||.+.. +..++|+++++|++++++++++++
T Consensus 151 ~~-----------~~~~i~ysgDt~~~~~~~~~~~~~~~~Dlli~e~~~~~~~---~~~~~H~~~~~a~~~a~~~~~k~l 216 (250)
T PRK11244 151 ET-----------AHSRVAYLTDTVGLPEDTLKFLRNNQPDLLVLDCSHPPQE---DAPRNHNDLTTALAIIEVLRPPRV 216 (250)
T ss_pred ec-----------CCeEEEEEcCCCCCCHHHHHHHhcCCCCEEEEeCcCCCCC---CCCCCCCCHHHHHHHHHhcCCceE
Confidence 87 78899999999976 4565553 6899999999998753 235789999999999999999999
Q ss_pred EEeeccCCCCCCcccccccCCceEEeeeCcEEec
Q 002976 791 ILTHFSQRYPKIPVVDETHMHKTCIAFDLMSINL 824 (861)
Q Consensus 791 vLtHfS~Ry~~~~~~~~~~~~~v~~A~D~m~i~l 824 (861)
+|||+|+++.+..........++.+|+|||++.+
T Consensus 217 vltH~~~~~~~~~~~~~~~~~~~~~a~DG~~i~~ 250 (250)
T PRK11244 217 ILTHISHQLDAWLMENAALPSGVEVAYDGMEIGL 250 (250)
T ss_pred EEEcccCCcchhhhhhhhcCCceEEecCccEeeC
Confidence 9999999876532112233568999999999975
No 7
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=100.00 E-value=3e-33 Score=304.81 Aligned_cols=225 Identities=23% Similarity=0.384 Sum_probs=182.5
Q ss_pred EEEEeeCCCC--C-CCCcEEEEEeC----CcEEEEEcChhHHHHHHHcCCCcCCCCEEEECcCCcCccCcHHHHHHHHhc
Q 002976 46 VQILGTGMDT--Q-DTSPSVLLFFD----NQRFIFNAGEGLQRFCTEHKIKLSKVDHIFLSRVCSETAGGLPGLLLTLAG 118 (861)
Q Consensus 46 l~~LGtgs~~--~-~~~~slll~~~----~~~yLfD~GeGtqr~l~~~~i~~~ki~~IFiTH~H~DHi~GLpgll~t~~~ 118 (861)
|+|||||++. + |+.+|++|+.+ +.+||||||+|+++++.+.++++.+|++|||||.|+||++||++|+.++..
T Consensus 1 ~~~LGt~~~~p~~~r~~s~~lv~~~~~~~~~~iLiD~G~g~~~~l~~~~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~ 80 (303)
T TIGR02649 1 LIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSM 80 (303)
T ss_pred CEEEecCCCCCCCCCCccEEEEEccCCCCCCEEEEECCccHHHHHHHhCCCHHHCcEEEEeCCChhhcCCHHHHHHHHHh
Confidence 5799999743 3 67899999874 478999999999999999999999999999999999999999999988765
Q ss_pred cCCCCCcEEEEcCccHHHHHHHHHhhcccCceeeeeecCCCCCCCCcCCCCccCCCceeEeeCCcEEEEEEEcCCCCCCC
Q 002976 119 IGDEGLSVNVWGPSDLKYLVDAMKSFIPHAAMVHTHCFGPAPSSDASLPDSAKSANHIILVDNELAKISAILLKPSCSDG 198 (861)
Q Consensus 119 ~~~~~~~l~IyGP~gl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~V~~~~l~h~~~~~ 198 (861)
.+.. .++.||||+++...+...+.+..... .++. .+. ...++..++++.++|+++++.|.
T Consensus 81 ~~~~-~~l~Iygp~~~~~~l~~~~~~~~~~~-----~~~~------~~~----~i~~~~~~~~~~~~v~~~~~~H~---- 140 (303)
T TIGR02649 81 SGII-QPLTIYGPQGIREFVETALRISGSWT-----DYPL------EIV----EIGAGEILDDGLRKVTAYPLEHP---- 140 (303)
T ss_pred cCCC-CCeEEEechhHHHHHHHHHHhccccc-----CCce------EEE----EcCCCceEecCCeEEEEEEccCc----
Confidence 5432 47999999999998887665431110 0100 000 01223466778899999999996
Q ss_pred CCCCCCCCeeEEEEEeCCccCCCCHHHHHHcCCCCChhhhhhcCCCcEEeCCCceeecCCCccCCCCCCCEEEEE-cCCC
Q 002976 199 SPVKPGETSVIYVCELPEITGKFDPKKAVALGLKPGPKYRELQSGKSVKSDTLDIMVHPSDVLGPSLPGPLVLLV-DCPT 277 (861)
Q Consensus 199 ~~~~~~~~s~gY~~~~~~~~gkf~~~ka~~lGv~~g~~~~~L~~G~~V~l~dg~~~v~p~~v~~~~~~g~~~~il-D~p~ 277 (861)
.+|+||+|++++++|+||++|++++|||||+++++|++|+.|+++||+ .++|+++++++.+|++++|+ |+.
T Consensus 141 ------~~~~gy~i~~~~~~g~~~~~kl~~lgi~~g~~~~~L~~g~~v~~~dg~-~~~~~~~~~~~~~g~~i~y~gDt~- 212 (303)
T TIGR02649 141 ------LECYGYRIEEHDKPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGR-QINGADYLAAPVPGKALAIFGDTG- 212 (303)
T ss_pred ------cceEEEEEeccCCcCCCCHHHHHHCCCCCChHHHHhcCCCeEEeCCCc-EEcHHHeeCCCCCCcEEEEecCCC-
Confidence 489999999999999999999999999999999999999999999998 59999999999999999996 652
Q ss_pred hhHHHHHhhhhccccccccCCCCcccCCceeEEEEeCCC
Q 002976 278 ESHVLELLSAESLNSYYADFSGDPQCAKTVNCIIHLSPV 316 (861)
Q Consensus 278 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~H~~~~ 316 (861)
+.+++++ .++++|+++|++.-
T Consensus 213 --~~~~~~~----------------~~~~adlLi~Eat~ 233 (303)
T TIGR02649 213 --PCDAALD----------------LAKGVDVMVHEATL 233 (303)
T ss_pred --ChHHHHH----------------HhcCCCEEEEeccC
Confidence 2334332 34678999999984
No 8
>PRK02113 putative hydrolase; Provisional
Probab=100.00 E-value=3.8e-33 Score=296.44 Aligned_cols=234 Identities=22% Similarity=0.310 Sum_probs=175.4
Q ss_pred cEEEEEecCCC--CCC--------------CCCCccEEEEEEeCCceEEEeCCcchHHHHHHHhCccchhhhhccccEEE
Q 002976 492 LEIVLLGTGSS--QPS--------------KYRNVSSIYVNLFSKGSLLLDCGEGTLGQLKRRYGVEGADSAVRKLRCIW 555 (861)
Q Consensus 492 ~~i~fLGTGsa--~Ps--------------~~Rn~Ss~ll~~~~~~~iLlDcGegt~~qL~r~~g~~~~~~~l~~i~~If 555 (861)
|+++|||||++ +|. +.|+.+|++|+. ++..||||||+|+..|+.+ .+ +.++++||
T Consensus 1 m~~~~lGtg~~~g~P~~~c~c~~C~~~~~~~~R~~~s~li~~-~~~~iLiD~G~g~~~~l~~-~~-------~~~id~I~ 71 (252)
T PRK02113 1 MKIRILGSGTSTGVPEIGCTCPVCTSKDPRDNRLRTSALVET-EGARILIDCGPDFREQMLR-LP-------FGKIDAVL 71 (252)
T ss_pred CEEEEEEeCCCCCeecCCCCCccCCCCCCCCcceeeEEEEEE-CCeEEEEECCchHHHHHHh-cC-------ccccCEEE
Confidence 78999999875 554 489999999998 6789999999999988877 33 47899999
Q ss_pred EeccchhhhccHHHHHHHHHHhhcCCCCCCeEEEeCchHHHHHHHHHhcccccceeeecccccccccccccCCCCCcccC
Q 002976 556 ISHIHADHHAGLARILALRRDLLKGVPHEPLLVVGPGPLKRYLDAYERLEDLDMQFLHCRYTREASWNDFEGNGEPVKNL 635 (861)
Q Consensus 556 ISH~H~DH~~GL~~ll~~~~~~~~g~~~~pl~I~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (861)
|||.|.||+.||+.++... +..++.||+|+.+.+++...... .+.. ..++..
T Consensus 72 lTH~H~DH~~gl~~l~~~~-------~~~~~~i~~~~~~~~~l~~~~~~-----~~~~------~~~~~~---------- 123 (252)
T PRK02113 72 ITHEHYDHVGGLDDLRPFC-------RFGEVPIYAEQYVAERLRSRMPY-----CFVE------HSYPGV---------- 123 (252)
T ss_pred ECCCChhhhCCHHHHHHhc-------cCCCceEEECHHHHHHHHhhCCe-----eecc------CCCCCC----------
Confidence 9999999999999885432 23689999999988887654210 0000 000000
Q ss_pred CCCCCCCCccccccccchhhhcccccccccccCCCCCCCCCcchhhhHhHHHHHHHcCCceeeEEeeccC-CCCceEEEe
Q 002976 636 STPGSPFSTEGLINKTEANLFAKGSCMQSVWKGPGIPVDNNAAFPLLKNLKNVLNEAGLETLISFPVVHC-PQAFGFALK 714 (861)
Q Consensus 636 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lg~~~i~~~pv~H~-~~a~G~~i~ 714 (861)
+ .+.. .. ..++.++ .++.++|+++++.|. .+++||++.
T Consensus 124 -----~--------~~~~---------~~--~~~g~~~-----------------~~~~~~i~~~~~~H~~~~~~gy~i~ 162 (252)
T PRK02113 124 -----P--------NIPL---------RE--IEPDRPF-----------------LVNHTEVTPLRVMHGKLPILGYRIG 162 (252)
T ss_pred -----c--------ceee---------EE--cCCCCCE-----------------EECCeEEEEEEecCCCccEEEEEeC
Confidence 0 0000 00 0122221 356789999999997 479999983
Q ss_pred ccccccccCcccCCcEEEEeCCCCCC-hhHHhhcCCCcEEEEeccCCCChHHHHHhcCCCCHHHHHHHHHHcCCCEEEEe
Q 002976 715 AAERINSVGKVIPGWKIVYSGDTRPC-PELVEASRGATVLIHEATFEDGMMEEAIAKNHSTTKEAIDVGSSAGVYRIILT 793 (861)
Q Consensus 715 ~~~~~~~~~~~~~G~ki~YsGDT~p~-~~l~~~~~~aDlLIhEaTf~d~~~~~a~~~~HsT~~eA~~va~~~~ak~lvLt 793 (861)
+++|+|||.+. +.+.+.++++|+|||||++.. ...+|+|++||+++++++++|+++||
T Consensus 163 ---------------~i~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~------~~~~H~t~~~a~~~~~~~~~k~l~l~ 221 (252)
T PRK02113 163 ---------------KMAYITDMLTMPEEEYEQLQGIDVLVMNALRIA------PHPTHQSLEEALENIKRIGAKETYLI 221 (252)
T ss_pred ---------------CEEEccCCCCCCHHHHHHhcCCCEEEEhhhcCC------CCCCcCCHHHHHHHHHHhCCCEEEEE
Confidence 69999999964 667889999999999998632 35789999999999999999999999
Q ss_pred eccCCCCCCcccccccCCceEEeeeCcEEec
Q 002976 794 HFSQRYPKIPVVDETHMHKTCIAFDLMSINL 824 (861)
Q Consensus 794 HfS~Ry~~~~~~~~~~~~~v~~A~D~m~i~l 824 (861)
|+|++|+....+.+....++.+|+|||++.+
T Consensus 222 H~s~~~~~~~~~~~~~~~~~~~A~Dg~~~~~ 252 (252)
T PRK02113 222 HMSHHIGLHADVEKELPPHVHFAYDGLEIIF 252 (252)
T ss_pred cccccchhHHHHHHhCCCCceeccCceEEeC
Confidence 9999997543333334557899999999874
No 9
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.98 E-value=2.5e-31 Score=287.66 Aligned_cols=246 Identities=19% Similarity=0.204 Sum_probs=171.3
Q ss_pred cEEEEEecCC--CCCC------------------CCCCccEEEEEEeCCceEEEeCCcchHHHHHHHhCcc--chhhhhc
Q 002976 492 LEIVLLGTGS--SQPS------------------KYRNVSSIYVNLFSKGSLLLDCGEGTLGQLKRRYGVE--GADSAVR 549 (861)
Q Consensus 492 ~~i~fLGTGs--a~Ps------------------~~Rn~Ss~ll~~~~~~~iLlDcGegt~~qL~r~~g~~--~~~~~l~ 549 (861)
|+|+|||||+ ++|. +.|..+|++|+..+...||||||+|+..||.+ ++.- ...-.+.
T Consensus 1 m~lt~LGtg~~~g~P~~~C~C~~C~~ar~~~~~~~~R~~ss~li~~~g~~~iLiD~G~g~~~ql~~-~~~~~~~~g~~~~ 79 (302)
T PRK05184 1 MRIIVLGSAAGGGFPQWNCNCPNCRGARAGTIRAKPRTQSSIAVSADGEDWVLLNASPDIRQQIQA-TPALQPARGLRDT 79 (302)
T ss_pred CEEEEEEecCCCCCCcCCCCchhchhhhcCCCcCCcccccEEEEEcCCCEEEEEECChhHHHHHHh-chhcCccccCCcc
Confidence 7999999966 5787 68999999998634346999999999999998 3100 0001246
Q ss_pred cccEEEEeccchhhhccHHHHHHHHHHhhcCCCCCCeEEEeCchHHHHHHHHHhcccccceeeecccccccccccccCCC
Q 002976 550 KLRCIWISHIHADHHAGLARILALRRDLLKGVPHEPLLVVGPGPLKRYLDAYERLEDLDMQFLHCRYTREASWNDFEGNG 629 (861)
Q Consensus 550 ~i~~IfISH~H~DH~~GL~~ll~~~~~~~~g~~~~pl~I~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (861)
+|++|||||.|+||+.||+.|. +..+|.||+|+.+.+.++...... .+. . .+..
T Consensus 80 ~ldav~lTH~H~DHi~Gl~~l~----------~~~~l~Vyg~~~~~~~l~~~~~~f----~~~--~-----~~~~----- 133 (302)
T PRK05184 80 PIAAVVLTDGQIDHTTGLLTLR----------EGQPFPVYATPAVLEDLSTGFPIF----NVL--D-----HYGG----- 133 (302)
T ss_pred cccEEEEeCCchhhhhChHhhc----------cCCCeEEEeCHHHHHHHHhcCCcc----ccc--c-----cccc-----
Confidence 8999999999999999998772 136899999999988775421100 000 0 0000
Q ss_pred CCcccCCCCCCCCCccccccccchhhhcccccccccccCCCCCCCCCcchhhhHhHHHHHHHc---CCceeeEEeeccC-
Q 002976 630 EPVKNLSTPGSPFSTEGLINKTEANLFAKGSCMQSVWKGPGIPVDNNAAFPLLKNLKNVLNEA---GLETLISFPVVHC- 705 (861)
Q Consensus 630 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l---g~~~i~~~pv~H~- 705 (861)
+....+ .++.++ ++ +.++|+++|+.|.
T Consensus 134 ---------------------~~~~~i-----------~~~~~~-----------------~i~~~~~~~Vt~~~v~H~~ 164 (302)
T PRK05184 134 ---------------------VQRRPI-----------ALDGPF-----------------AVPGLPGLRFTAFPVPSKA 164 (302)
T ss_pred ---------------------eeeEEe-----------cCCCce-----------------EecCCCCcEEEEEEcCCCC
Confidence 000000 111111 23 3579999999764
Q ss_pred ------------CCCceEEEe--ccccccccCcccCCcEEEEeCCC-CCChhHHhhcCCCcEEEEeccCCCChHHH----
Q 002976 706 ------------PQAFGFALK--AAERINSVGKVIPGWKIVYSGDT-RPCPELVEASRGATVLIHEATFEDGMMEE---- 766 (861)
Q Consensus 706 ------------~~a~G~~i~--~~~~~~~~~~~~~G~ki~YsGDT-~p~~~l~~~~~~aDlLIhEaTf~d~~~~~---- 766 (861)
..++||+|+ . +|++|+|++|+ .++++++++++++|+||+||||..+....
T Consensus 165 ~~~~~~~~~~h~~~~~gyri~~~~-----------~g~~~~y~tD~~~~~~~~~~~~~gaDlli~da~~~~~~~~~~~g~ 233 (302)
T PRK05184 165 PPYSPHRSDPEPGDNIGLRIEDRA-----------TGKRLFYAPGLAEVTDALRARLAGADCVLFDGTLWTDDEMIRAGV 233 (302)
T ss_pred CcccccccCCCCCCeEEEEEEecC-----------CCcEEEEECCCCCCCHHHHHHHhcCCEEEEeCCCCcCHHHHhccc
Confidence 469999996 3 67899999666 78999999999999999999964432211
Q ss_pred ----HHhcCCCCH---HHHHHHHHHcCCCEEEEeeccCCCCCC-ccc---ccccCCceEEeeeCcEEec
Q 002976 767 ----AIAKNHSTT---KEAIDVGSSAGVYRIILTHFSQRYPKI-PVV---DETHMHKTCIAFDLMSINL 824 (861)
Q Consensus 767 ----a~~~~HsT~---~eA~~va~~~~ak~lvLtHfS~Ry~~~-~~~---~~~~~~~v~~A~D~m~i~l 824 (861)
....+|++. .++++.+.+.++|+++|||+|+.+|.. ... +.....++.+|+|||+|.+
T Consensus 234 ~~~~~~~~~H~~~~~~~~~l~~~~~~~~k~l~ltHl~h~~~~~~~~~~~~~~~~~~~~~~A~DGm~i~l 302 (302)
T PRK05184 234 GTKTGRRMGHLPQSGPGGMIAALARLPIARKILIHINNTNPILDEDSPERAELEAAGIEVAHDGMEIEL 302 (302)
T ss_pred CccccccCCCCCCCChHHHHHHhhcCCCCcEEEEEcCCCChhhccCCHHHHHHHhCCCEEccCCcEEeC
Confidence 124578885 467888889999999999999765432 111 1112367899999999975
No 10
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.97 E-value=1.9e-30 Score=283.02 Aligned_cols=224 Identities=29% Similarity=0.455 Sum_probs=183.2
Q ss_pred EEEEEeeCCC--CC-CCCcEEEEEeCCcEEEEEcChhHHHHHHHcCCCcCCCCEEEECcCCcCccCcHHHHHHHHhccCC
Q 002976 45 YVQILGTGMD--TQ-DTSPSVLLFFDNQRFIFNAGEGLQRFCTEHKIKLSKVDHIFLSRVCSETAGGLPGLLLTLAGIGD 121 (861)
Q Consensus 45 ~l~~LGtgs~--~~-~~~~slll~~~~~~yLfD~GeGtqr~l~~~~i~~~ki~~IFiTH~H~DHi~GLpgll~t~~~~~~ 121 (861)
+|+|||||++ ++ |+.+|++|+.++..+|||||+|+++++.+.++++.++++|||||.|+||++||++++.++...++
T Consensus 1 ~~~~lGtg~~~p~~~r~~~~~~v~~~~~~iLiD~G~g~~~~l~~~~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~ 80 (299)
T TIGR02651 1 EITFLGTGGGVPTKERNLPSIALKLNGELWLFDCGEGTQRQMLRSGISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGR 80 (299)
T ss_pred CEEEEeCCCCCCCCCCCCceEEEEECCeEEEEECCHHHHHHHHHcCCCHHHCcEEEEECCchhhhcChHHHHHhhccCCC
Confidence 4899999974 33 78899999999999999999999999999999888999999999999999999999987665442
Q ss_pred CCCcEEEEcCccHHHHHHHHHhhcccCc-e-eeeeecCCCCCCCCcCCCCccCCCcee-EeeCCcEEEEEEEcCCCCCCC
Q 002976 122 EGLSVNVWGPSDLKYLVDAMKSFIPHAA-M-VHTHCFGPAPSSDASLPDSAKSANHII-LVDNELAKISAILLKPSCSDG 198 (861)
Q Consensus 122 ~~~~l~IyGP~gl~~~l~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~i~V~~~~l~h~~~~~ 198 (861)
..++.||||+++...++....+..... . +...+ ..++. .+.+++++|+++++.|.
T Consensus 81 -~~~i~Iy~p~~~~~~l~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~v~~~~~~H~---- 138 (299)
T TIGR02651 81 -KEPLTIYGPPGIKEFIETSLRVSYTYLNYPIKIHE-----------------IEEGGLVFEDDGFKVEAFPLDHS---- 138 (299)
T ss_pred -CceEEEECCccHHHHHHHHHHHcccCCCceEEEEE-----------------ccCCCceEecCCEEEEEEEcCCC----
Confidence 247899999999988877655431110 0 01111 12222 57788999999999996
Q ss_pred CCCCCCCCeeEEEEEeCCccCCCCHHHHHHcCCCCChhhhhhcCCCcEEeCCCceeecCCCccCCCCCCCEEEEEcCCCh
Q 002976 199 SPVKPGETSVIYVCELPEITGKFDPKKAVALGLKPGPKYRELQSGKSVKSDTLDIMVHPSDVLGPSLPGPLVLLVDCPTE 278 (861)
Q Consensus 199 ~~~~~~~~s~gY~~~~~~~~gkf~~~ka~~lGv~~g~~~~~L~~G~~V~l~dg~~~v~p~~v~~~~~~g~~~~ilD~p~~ 278 (861)
.+++||+|+.++.+|+|+++|++++|+|+|+++++|++|++|+++||+ ++++++|+++..+|.+++|. .|+
T Consensus 139 ------~~~~gy~i~~~~~~~~~~~~k~~~~~l~~g~~~~~L~~g~~v~~~~G~-~~~~~~~~~~~~~g~~i~y~--gDt 209 (299)
T TIGR02651 139 ------IPSLGYRFEEKDRPGKFDREKAKELGIPPGPLYGKLKRGETVTLIDGR-IIDPEDVLGPPRKGRKIAYT--GDT 209 (299)
T ss_pred ------CceEEEEEEECCCCCCcCHHHHHHCCCCcchhHHHhhCCCeEEeCCCe-EEeHHHcccCCcCCcEEEEe--cCC
Confidence 489999999999999999999999999999999999999999999997 59999999999999999995 334
Q ss_pred hHHHHHhhhhccccccccCCCCcccCCceeEEEEeCC
Q 002976 279 SHVLELLSAESLNSYYADFSGDPQCAKTVNCIIHLSP 315 (861)
Q Consensus 279 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~H~~~ 315 (861)
.+.+.+.+ ..+++|+++|++.
T Consensus 210 ~~~~~~~~----------------~~~~~dlLi~E~~ 230 (299)
T TIGR02651 210 RPCEEVIE----------------FAKNADLLIHEAT 230 (299)
T ss_pred CChHHHHH----------------HHcCCCEEEEECC
Confidence 44444432 2356899999997
No 11
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=99.96 E-value=2.5e-29 Score=269.64 Aligned_cols=215 Identities=27% Similarity=0.481 Sum_probs=180.6
Q ss_pred eEEEEEeeCCC--CC-CCCcEEEEEeCCcEEEEEcChhHHHHHHHcCCCcCCCCEEEECcCCcCccCcHHHHHHHHhccC
Q 002976 44 SYVQILGTGMD--TQ-DTSPSVLLFFDNQRFIFNAGEGLQRFCTEHKIKLSKVDHIFLSRVCSETAGGLPGLLLTLAGIG 120 (861)
Q Consensus 44 ~~l~~LGtgs~--~~-~~~~slll~~~~~~yLfD~GeGtqr~l~~~~i~~~ki~~IFiTH~H~DHi~GLpgll~t~~~~~ 120 (861)
|+++|||||++ ++ |+.|+++|+.++..+|||||||+|+++.+.++++.++++|||||+|+||+.||+||+.++...+
T Consensus 2 m~i~fLGtg~~~Pt~~r~~~s~ll~~~~~~~L~DcGeGt~~~l~~~~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~~~~ 81 (292)
T COG1234 2 MEITFLGTGGAVPTKDRNVSSILLRLEGEKFLFDCGEGTQHQLLRAGLPPRKIDAIFITHLHGDHIAGLPGLLVSRSFRG 81 (292)
T ss_pred cEEEEEecCCCCCcCccccceeEEEeCCeeEEEECCHhHHHHHHHhcCChhhccEEEeeccccchhcCcHHHHHHhhccC
Confidence 89999999974 33 6789999999999999999999999999999999999999999999999999999999988877
Q ss_pred CCCCcEEEEcCccHHHHHHHHHhhcccCceeeeeecCCCCCCCCcCCCCccCCCceeEeeC--CcEEEEEEEcCCCCCCC
Q 002976 121 DEGLSVNVWGPSDLKYLVDAMKSFIPHAAMVHTHCFGPAPSSDASLPDSAKSANHIILVDN--ELAKISAILLKPSCSDG 198 (861)
Q Consensus 121 ~~~~~l~IyGP~gl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~i~V~~~~l~h~~~~~ 198 (861)
... ++.||||+++.+++...+....... .+. ....+. +.+.|.+..+.|.
T Consensus 82 ~~~-~l~iygP~g~~~~~~~~~~~~~~~~-----~~~------------------i~~~e~~~~~~~v~~~~~~h~---- 133 (292)
T COG1234 82 RRE-PLKIYGPPGIKEFVETSLRLSYSKL-----TYE------------------IIGHEIEEDAFEVEALELDHG---- 133 (292)
T ss_pred CCC-ceeEECCcchhhhhhhhhhhccccc-----ceE------------------EEEEEeccCceEEEEEecCCC----
Confidence 654 7999999999999887765431110 000 001111 5789999999997
Q ss_pred CCCCCCCCeeEEEEEeCCccCCCCHHHHHHcCCCCChhhhhhcCCCcEEeCCCceeecCCCccCCCCCCCEEEEEcCCCh
Q 002976 199 SPVKPGETSVIYVCELPEITGKFDPKKAVALGLKPGPKYRELQSGKSVKSDTLDIMVHPSDVLGPSLPGPLVLLVDCPTE 278 (861)
Q Consensus 199 ~~~~~~~~s~gY~~~~~~~~gkf~~~ka~~lGv~~g~~~~~L~~G~~V~l~dg~~~v~p~~v~~~~~~g~~~~ilD~p~~ 278 (861)
.++++|.+.++.++|+||+++++ |+|+|+++..|+.|..++ . + ++.++++++++.+|++++| +-|+
T Consensus 134 ------~~~~~y~~~e~~~~~~~~~~~~~--~~~~g~~~~~l~~~h~~~-~--~-~~~~~~~~~~~~~G~~v~y--sGDT 199 (292)
T COG1234 134 ------VPALGYRIEEPDRPGRFDAEKLK--GLPPGPLITALKAGHPVE-E--R-VITPADRIGEPRKGKSVVY--SGDT 199 (292)
T ss_pred ------ccccceeeecCCCcCcCCHHHhc--CCCCchHHHHHhCCCcee-e--e-ecCHHHhccccCCCcEEEE--ECCC
Confidence 59999999999999999999999 999999999999999998 5 4 5999999999999999999 4555
Q ss_pred hHHHHHhhhhccccccccCCCCcccCCceeEEEEeCCC
Q 002976 279 SHVLELLSAESLNSYYADFSGDPQCAKTVNCIIHLSPV 316 (861)
Q Consensus 279 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~H~~~~ 316 (861)
.+.++++. .++++|++||++..
T Consensus 200 ~p~~~~~~----------------~a~~aDlLiHEat~ 221 (292)
T COG1234 200 RPCDELID----------------LAKGADLLIHEATF 221 (292)
T ss_pred CCCHHHHH----------------HhcCCCEEEEeccC
Confidence 55556553 45789999999984
No 12
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.96 E-value=5.4e-28 Score=260.34 Aligned_cols=244 Identities=20% Similarity=0.263 Sum_probs=170.6
Q ss_pred EEEEEecCCC--CCC------------------CCCCccEEEEEEeCCceEEEeCCcchHHHHHHHh------Cccchhh
Q 002976 493 EIVLLGTGSS--QPS------------------KYRNVSSIYVNLFSKGSLLLDCGEGTLGQLKRRY------GVEGADS 546 (861)
Q Consensus 493 ~i~fLGTGsa--~Ps------------------~~Rn~Ss~ll~~~~~~~iLlDcGegt~~qL~r~~------g~~~~~~ 546 (861)
+|+|||||++ +|. +.|..+|++|+..++.+||||||+++..|+.+.- |.
T Consensus 1 ~~~~LGtg~s~G~P~~~C~C~~C~~a~~~~~~~~~R~rss~ll~~~g~~~iLID~Gpd~r~ql~~~~~~~~~~gl----- 75 (302)
T TIGR02108 1 HIVVLGSAAGGGFPQWNCNCPNCRGARAGTIGAKARTQSSIAVSADGERWVLLNASPDIRQQIQATPALHPQRGL----- 75 (302)
T ss_pred CEEEEEecCCCCCCcCCCCChhhHHHhcCCCCCccccccEEEEEeCCCEEEEEECCHHHHHHHHhCcccccccCC-----
Confidence 4889999875 452 2789999999764556899999999999998721 33
Q ss_pred hhccccEEEEeccchhhhccHHHHHHHHHHhhcCCCCCCeEEEeCchHHHHHHHHHhcccccceeeeccccccccccccc
Q 002976 547 AVRKLRCIWISHIHADHHAGLARILALRRDLLKGVPHEPLLVVGPGPLKRYLDAYERLEDLDMQFLHCRYTREASWNDFE 626 (861)
Q Consensus 547 ~l~~i~~IfISH~H~DH~~GL~~ll~~~~~~~~g~~~~pl~I~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (861)
.+.+|++|||||.|+||+.||..|. +..+|.||+++.+.+.|..+....... .|. +
T Consensus 76 ~~~~IdaI~lTH~H~DHi~GL~~L~----------~~~~lpVya~~~t~~~L~~~~~~~~~~------------~~~-~- 131 (302)
T TIGR02108 76 RHTPIAGVVLTDGEIDHTTGLLTLR----------EGQPFTLYATEMVLQDLSDNPIFNVLD------------HWN-V- 131 (302)
T ss_pred CcccCCEEEEeCCCcchhhCHHHHc----------CCCCceEEECHHHHHHHHhCCCccccc------------hhh-c-
Confidence 2578999999999999999999882 126899999999988886421100000 000 0
Q ss_pred CCCCCcccCCCCCCCCCccccccccchhhhcccccccccccCCCCCCCCCcchhhhHhHHHHHHHcCCceeeEEeec---
Q 002976 627 GNGEPVKNLSTPGSPFSTEGLINKTEANLFAKGSCMQSVWKGPGIPVDNNAAFPLLKNLKNVLNEAGLETLISFPVV--- 703 (861)
Q Consensus 627 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lg~~~i~~~pv~--- 703 (861)
....+ .++.++.-. ....+.++|+++|+.
T Consensus 132 -------------------------~~~~i-----------~~~~~~~~~------------~~~~~g~~I~~f~v~h~~ 163 (302)
T TIGR02108 132 -------------------------RRQPI-----------ALNEKFEFR------------IVARPGLEFTPFAVPGKA 163 (302)
T ss_pred -------------------------cceEe-----------cCCCcEEec------------ccccCCEEEEEEEcCCCC
Confidence 00000 001110000 001234799999999
Q ss_pred -----c--C----CCCceEEEeccccccccCcccC--CcEEEEeCCCC-CChhHHhhcCCCcEEEEeccC-CCChHHH--
Q 002976 704 -----H--C----PQAFGFALKAAERINSVGKVIP--GWKIVYSGDTR-PCPELVEASRGATVLIHEATF-EDGMMEE-- 766 (861)
Q Consensus 704 -----H--~----~~a~G~~i~~~~~~~~~~~~~~--G~ki~YsGDT~-p~~~l~~~~~~aDlLIhEaTf-~d~~~~~-- 766 (861)
| . .+++||+|+. + |++++|++||. +++++++.++++|+||+||+| .+.....
T Consensus 164 ~~~~~H~~~d~~~~~~~Gy~i~~-----------~~~g~~~~y~tD~g~~~~~~~~~l~~~d~liida~~~~d~e~l~~g 232 (302)
T TIGR02108 164 PLYSEHRAGDPHPGDTLGLKIED-----------GTTGKRLFYIPGCAEITDDLKARMAGADLVFFDGTLWRDDEMIRAG 232 (302)
T ss_pred CccccccccCCCCCCcEEEEEEe-----------CCCCcEEEEECCCCCCCHHHHHHHhCCCEEEEeCCCCCcHHHHhcC
Confidence 5 1 3689999986 5 88999999998 788999999999999999995 4433211
Q ss_pred -----HHhcCCCCHH---HHHHHHHHcCCCEEEEeeccCCCCCCc-cc--ccc-cCCceEEeeeCcEEec
Q 002976 767 -----AIAKNHSTTK---EAIDVGSSAGVYRIILTHFSQRYPKIP-VV--DET-HMHKTCIAFDLMSINL 824 (861)
Q Consensus 767 -----a~~~~HsT~~---eA~~va~~~~ak~lvLtHfS~Ry~~~~-~~--~~~-~~~~v~~A~D~m~i~l 824 (861)
....+|++.. ||++...+.++++++|||+|+.+|-.. .. .+. ...++.+|+|||+|.+
T Consensus 233 ~ypri~~~~gHls~~~~~~al~~~~~~~~~~~~l~Hl~h~~~~~~~~~~~~~~~~~~~~~~ayDG~~~~l 302 (302)
T TIGR02108 233 VGTKTGRRMGHVSMSGEGGSLAVLADLEIARKVLIHINNTNPILDEDSPERAEVEAAGWEVAYDGMEIVL 302 (302)
T ss_pred CCCCcCCCCCCCCccchHHHHHHhhcCCCCcEEEEecCCCCcCCCCCCHHHHHHHHcCCEEecCCcEEeC
Confidence 1346788776 677777778999999999999765321 11 111 1378999999999975
No 13
>PRK02126 ribonuclease Z; Provisional
Probab=99.96 E-value=1.3e-27 Score=260.66 Aligned_cols=244 Identities=26% Similarity=0.339 Sum_probs=160.4
Q ss_pred ccEEEEEEe-CCceEEEeCCcchHHHHHHHhCccchhhhhccccEEEEeccchhhhccHHHHHHHHHHhhcCCCCCCeEE
Q 002976 510 VSSIYVNLF-SKGSLLLDCGEGTLGQLKRRYGVEGADSAVRKLRCIWISHIHADHHAGLARILALRRDLLKGVPHEPLLV 588 (861)
Q Consensus 510 ~Ss~ll~~~-~~~~iLlDcGegt~~qL~r~~g~~~~~~~l~~i~~IfISH~H~DH~~GL~~ll~~~~~~~~g~~~~pl~I 588 (861)
.+|++|... ++..+|||||+ +.|+.+ .+ +.+|++|||||.|+||+.|++.|+.... + +..++.|
T Consensus 16 dn~~~l~~~~~~~~iLiD~G~--~~~l~~-~~-------~~~i~~I~iTH~H~DHi~Gl~~l~~~~~----~-r~~~l~i 80 (334)
T PRK02126 16 DPGLYVDFLFERRALLFDLGD--LHHLPP-RE-------LLRISHIFVSHTHMDHFIGFDRLLRHCL----G-RPRRLRL 80 (334)
T ss_pred CcEEEEEECCCCeEEEEcCCC--HHHHhh-cC-------CCccCEEEEcCCChhHhCcHHHHHHHhc----c-CCCCeEE
Confidence 467788763 46789999999 666665 22 5789999999999999999999986431 3 3578999
Q ss_pred EeCchHHHHHHHHHhcccccceeeecccccccccccccCCCCCcccCCCCCCCCCccccccccchhhhcccccccccccC
Q 002976 589 VGPGPLKRYLDAYERLEDLDMQFLHCRYTREASWNDFEGNGEPVKNLSTPGSPFSTEGLINKTEANLFAKGSCMQSVWKG 668 (861)
Q Consensus 589 ~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (861)
|||+++.++++.......... . ...|..|... ..++ +..++... .+..... +...
T Consensus 81 ygp~~~~~~l~~~~~~y~~~~--~------~~~~~~~~~~---~~~~--~~~~~~~~---------~~~~~~~---~~~~ 135 (334)
T PRK02126 81 FGPPGFADQVEHKLAGYTWNL--V------ENYPTTFRVH---EVEL--HDGRIRRA---------LFSCRRA---FARE 135 (334)
T ss_pred EECHHHHHHHHHHhccccccC--c------ccCCCceEEE---EEEc--cCccceee---------eeccccc---cccc
Confidence 999999999987643110000 0 0001111000 0000 00000000 0000000 0000
Q ss_pred CCCCCCCCcchhhhHhHHHHHHHcCCceeeEEeeccCCCCceEEEecccc------------------------------
Q 002976 669 PGIPVDNNAAFPLLKNLKNVLNEAGLETLISFPVVHCPQAFGFALKAAER------------------------------ 718 (861)
Q Consensus 669 ~~~~l~~~~~~~~~~~~~~~~~~lg~~~i~~~pv~H~~~a~G~~i~~~~~------------------------------ 718 (861)
+...... . .......+.++|+++|+.|..+|+||+|+.+++
T Consensus 136 ~~~~~~~---~------~~~~~~~~~~~V~a~~~~H~vp~~gy~~~e~~~~~~~~ek~~~~gi~~g~~~~~Lk~~~~~~~ 206 (334)
T PRK02126 136 AEEELSL---P------DGVLLDEPWFRVRAAFLDHGIPCLAFALEEKAHINIDKNRLAELGLPPGPWLRELKHAVLRGE 206 (334)
T ss_pred ccccccC---C------CCeEEeCCCEEEEEEEccCCCceeEEEEEecCCcCcCHHHHHHcCCCCChHHHHHHhhhhccC
Confidence 0000000 0 000113467899999999999999999985311
Q ss_pred -----ccc---------------------cCcccCCcEEEEeCCCCCCh----hHHhhcCCCcEEEEeccCCCChHHHHH
Q 002976 719 -----INS---------------------VGKVIPGWKIVYSGDTRPCP----ELVEASRGATVLIHEATFEDGMMEEAI 768 (861)
Q Consensus 719 -----~~~---------------------~~~~~~G~ki~YsGDT~p~~----~l~~~~~~aDlLIhEaTf~d~~~~~a~ 768 (861)
+.. ++...+|.+|+|+|||++++ .++++++++|+|||||||.++....+.
T Consensus 207 ~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~v~y~gDT~~~~~~~~~l~~~a~~aDlLI~Eat~~~~~~~~a~ 286 (334)
T PRK02126 207 PDDTPIRVLWRDGGGEHERVRPLGELKERVLRIEPGQKIGYVTDIGYTEENLARIVELAAGVDLLFIEAVFLDEDAEKAR 286 (334)
T ss_pred CCCceEEeeccCCCccceeEecHHHHHHHhccCCCCCEEEEECCCCCCcccHHHHHHHHcCCCEEEEEcccChHHhhhcc
Confidence 000 12224688999999999996 488899999999999999988877788
Q ss_pred hcCCCCHHHHHHHHHHcCCCEEEEeeccCCCCCC
Q 002976 769 AKNHSTTKEAIDVGSSAGVYRIILTHFSQRYPKI 802 (861)
Q Consensus 769 ~~~HsT~~eA~~va~~~~ak~lvLtHfS~Ry~~~ 802 (861)
.++|+|+++|+++|+++++++++|||||+||...
T Consensus 287 ~~gH~t~~~a~~lA~~a~vk~LvLtH~sp~~~~~ 320 (334)
T PRK02126 287 RKNHLTARQAGRLAREAGVKRLLPFHFSPRYQGR 320 (334)
T ss_pred cCCCCCHHHHHHHHHHcCCCEEEEEecCcccCCc
Confidence 8999999999999999999999999999999653
No 14
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.95 E-value=9.2e-28 Score=252.72 Aligned_cols=213 Identities=23% Similarity=0.323 Sum_probs=155.4
Q ss_pred CCCCCCccEEEEEEeCCceEEEeCCcchHHHHHHHhCccchhhhhccccEEEEeccchhhhccHHHHHHHHHHhhcCCCC
Q 002976 504 PSKYRNVSSIYVNLFSKGSLLLDCGEGTLGQLKRRYGVEGADSAVRKLRCIWISHIHADHHAGLARILALRRDLLKGVPH 583 (861)
Q Consensus 504 Ps~~Rn~Ss~ll~~~~~~~iLlDcGegt~~qL~r~~g~~~~~~~l~~i~~IfISH~H~DH~~GL~~ll~~~~~~~~g~~~ 583 (861)
|.+.|+.+|++|+. ++..||||||.+.+ .+.+. ..+|++|||||.|.||+.||+.+... ..
T Consensus 21 ~~~~r~~~s~~i~~-~~~~iliD~G~~~~---~~~~~-------~~~id~i~iTH~H~DHi~gl~~l~~~--------~~ 81 (238)
T TIGR03307 21 PDYRRQPCSAVIEF-NGARTLIDAGLTDL---AERFP-------PGSLQAILLTHYHMDHVQGLFPLRWG--------VG 81 (238)
T ss_pred ccccCcceEEEEEE-CCcEEEEECCChhH---hhccC-------ccCCCEEEEecCchhhhcchHHHHHh--------cC
Confidence 56789999999988 67799999997653 22232 36899999999999999999776421 13
Q ss_pred CCeEEEeCchHHHHHHHHHhcccccceeeecccccccccccccCCCCCcccCCCCCCCCCccccccccchhhhccccccc
Q 002976 584 EPLLVVGPGPLKRYLDAYERLEDLDMQFLHCRYTREASWNDFEGNGEPVKNLSTPGSPFSTEGLINKTEANLFAKGSCMQ 663 (861)
Q Consensus 584 ~pl~I~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 663 (861)
+++.||+|+.+..+. .+.... + +..+. ..+
T Consensus 82 ~~~~v~~~~~~~~~~-~~~~~~--~-------------~~~~~---------------------------------~~~- 111 (238)
T TIGR03307 82 EPIPVYGPPDEEGCD-DLFKHP--G-------------ILDFS---------------------------------KPL- 111 (238)
T ss_pred CceeEEeCchHhhHH-HHhcCc--c-------------ccccc---------------------------------ccc-
Confidence 579999999865322 111000 0 00000 000
Q ss_pred ccccCCCCCCCCCcchhhhHhHHHHHHHcCCceeeEEeeccCCCCceEEEeccccccccCcccCCcEEEEeCCCCCC-hh
Q 002976 664 SVWKGPGIPVDNNAAFPLLKNLKNVLNEAGLETLISFPVVHCPQAFGFALKAAERINSVGKVIPGWKIVYSGDTRPC-PE 742 (861)
Q Consensus 664 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~lg~~~i~~~pv~H~~~a~G~~i~~~~~~~~~~~~~~G~ki~YsGDT~p~-~~ 742 (861)
.++.. ..+|.++|+++|+.|..+++||+|+. +|++|+|+|||.+. +.
T Consensus 112 ----~~~~~-----------------~~~~~~~i~~~~~~H~~~~~g~~i~~-----------~~~~i~y~gDt~~~~~~ 159 (238)
T TIGR03307 112 ----EAFEP-----------------FDLGGLRVTPLPLVHSKLTFGYLLET-----------DGQRVAYLTDTAGLPPD 159 (238)
T ss_pred ----cCCce-----------------EEECCEEEEEEecCCCCcceEEEEec-----------CCcEEEEEecCCCCCHH
Confidence 01111 13577899999999998999999986 78899999999864 55
Q ss_pred HHhhcC--CCcEEEEeccCCCChHHHHHhcCCCCHHHHHHHHHHcCCCEEEEeeccCCCCCCccccc--ccCCceEEeee
Q 002976 743 LVEASR--GATVLIHEATFEDGMMEEAIAKNHSTTKEAIDVGSSAGVYRIILTHFSQRYPKIPVVDE--THMHKTCIAFD 818 (861)
Q Consensus 743 l~~~~~--~aDlLIhEaTf~d~~~~~a~~~~HsT~~eA~~va~~~~ak~lvLtHfS~Ry~~~~~~~~--~~~~~v~~A~D 818 (861)
+.+.++ ++|+||+||++.+... ..++|+++++|++++++++++++|||||+++.... +.+ ....++.+|+|
T Consensus 160 ~~~~~~~~~~D~li~e~~~~~~~~---~~~~H~~~~~~~~~~~~~~~~~lil~H~~~~~~~~--~~~~~~~~~~~~~a~D 234 (238)
T TIGR03307 160 TEAFLKNHPLDVLILDCSHPPQSD---APRNHNDLTRALAINEQLRPKQVILTHISHQLDAW--LMENPDLPSGVAVGYD 234 (238)
T ss_pred HHHHHhcCCCCEEEEeCCcCcccc---CCCCcCCHHHHHHHHHHcCCCEEEEEecccccchH--HHhhhhcCCceEEecc
Confidence 666664 7999999999975432 35789999999999999999999999999886532 211 13567999999
Q ss_pred CcEE
Q 002976 819 LMSI 822 (861)
Q Consensus 819 ~m~i 822 (861)
||+|
T Consensus 235 G~~~ 238 (238)
T TIGR03307 235 GQTL 238 (238)
T ss_pred cccC
Confidence 9985
No 15
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=99.94 E-value=6.8e-26 Score=235.16 Aligned_cols=212 Identities=18% Similarity=0.139 Sum_probs=145.3
Q ss_pred cEEEEEEeCCceEEEe-CCcchHHHHHHHhCccchhhhhccccEEEEeccchhhhccHHHHHHHHHHhhcCCCCCCeEEE
Q 002976 511 SSIYVNLFSKGSLLLD-CGEGTLGQLKRRYGVEGADSAVRKLRCIWISHIHADHHAGLARILALRRDLLKGVPHEPLLVV 589 (861)
Q Consensus 511 Ss~ll~~~~~~~iLlD-cGegt~~qL~r~~g~~~~~~~l~~i~~IfISH~H~DH~~GL~~ll~~~~~~~~g~~~~pl~I~ 589 (861)
|.+++ ....|||| +|+|....|.. .+..++.|||||+|.||++||+.++..+.... + +.+|+.||
T Consensus 12 t~~~~---~~~~ilfD~ag~g~~~~l~~---------k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~-~-~~~p~~Vy 77 (277)
T TIGR02650 12 STIIY---SPEEIIFDAAEEGSSTLGGK---------KVAAFKVFFLHGGHDDHAAGLGGVNIINNGGG-D-DEEKLDDF 77 (277)
T ss_pred EEEEE---CchhheehhhcccchhHHhh---------hHhhcCEEEeecCchhhhcchHHHHhhhhhcc-c-CCCCCeEE
Confidence 44444 55789999 99998766654 46789999999999999999998887654322 2 35789999
Q ss_pred eCchHHHHHHHHHhcccccceeeecccccccccccccCCCCCcccCCCCCCCCCccccccccchhhhcccccccccccCC
Q 002976 590 GPGPLKRYLDAYERLEDLDMQFLHCRYTREASWNDFEGNGEPVKNLSTPGSPFSTEGLINKTEANLFAKGSCMQSVWKGP 669 (861)
Q Consensus 590 ~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (861)
+|+++.+.++.+..+... ++-. ......|+. .+
T Consensus 78 ~P~g~~~~ve~~~~~~~~-~~~~---~~~~~~~~~-------------------------------------------~~ 110 (277)
T TIGR02650 78 FPKEGNAAEEETSEFIKA-ANED---LFFFFNHHL-------------------------------------------EE 110 (277)
T ss_pred CCcchhHHHHHHHHHHHH-hhhh---hccCcccCC-------------------------------------------CC
Confidence 999977776654332110 0000 000000000 00
Q ss_pred CCCCCCCcchhhhHhHHHHHHHc-CCceeeEEeeccCC---CCceEEEecccc----------------------ccccC
Q 002976 670 GIPVDNNAAFPLLKNLKNVLNEA-GLETLISFPVVHCP---QAFGFALKAAER----------------------INSVG 723 (861)
Q Consensus 670 ~~~l~~~~~~~~~~~~~~~~~~l-g~~~i~~~pv~H~~---~a~G~~i~~~~~----------------------~~~~~ 723 (861)
+... .. .... ....|+++++.|.. +|.||+|....+ .+.+.
T Consensus 111 ~~e~---------~~----~r~~~~~~~V~~f~t~H~v~~~~s~GY~~~~~r~KLK~E~~~l~~~eI~~l~~~gg~~~t~ 177 (277)
T TIGR02650 111 EDER---------FF----LDAAGFFKRVQPFFRKHHASEESFFGHHFEERRKKKEEEFGGDDKKEARLLKEEGGDDFTR 177 (277)
T ss_pred CCcE---------EE----eecCCccEEEecCccccccCccCccCeEEEEEeecchHhHcCCCHHHHHHHHHhCCccccc
Confidence 0000 00 0000 12468889999986 799999864211 00111
Q ss_pred cccCCcEEEEeCCCCCChhHHhhcCCCcEEEEeccCCCChHHHHHhcCCCCHHHHHHHHHHcCCCEEEEeeccCCCCC
Q 002976 724 KVIPGWKIVYSGDTRPCPELVEASRGATVLIHEATFEDGMMEEAIAKNHSTTKEAIDVGSSAGVYRIILTHFSQRYPK 801 (861)
Q Consensus 724 ~~~~G~ki~YsGDT~p~~~l~~~~~~aDlLIhEaTf~d~~~~~a~~~~HsT~~eA~~va~~~~ak~lvLtHfS~Ry~~ 801 (861)
...+++|+|||||+||+. +.+++||+|||||||.++... ..++|+|..||+++|+++++++++|||||+||..
T Consensus 178 -e~~~~~vvysGDT~~~~~--~~a~~adlLIhEaTf~d~~~~--~~~gH~t~~eaa~~A~~a~vk~LiLtH~Ssry~~ 250 (277)
T TIGR02650 178 -EEHHKILLIIGDDLAADD--EEEEGGEELIHECCFFDDADD--RRKKHAAADDEMEESKKAAGKKKIILHHISRRII 250 (277)
T ss_pred -cccCcEEEEeCCCCCCCh--HHhcCCCEEEEeccccccccc--ccCCCCCHHHHHHHHHHcCCCEEEEEeecccccH
Confidence 124579999999999975 889999999999999998753 3589999999999999999999999999999965
No 16
>PRK02126 ribonuclease Z; Provisional
Probab=99.93 E-value=1.4e-24 Score=237.02 Aligned_cols=224 Identities=19% Similarity=0.279 Sum_probs=161.1
Q ss_pred CCcEEEEEeC--CcEEEEEcChhHHHHHHHcCCCcCCCCEEEECcCCcCccCcHHHHHHHHhccCCCCCcEEEEcCccHH
Q 002976 58 TSPSVLLFFD--NQRFIFNAGEGLQRFCTEHKIKLSKVDHIFLSRVCSETAGGLPGLLLTLAGIGDEGLSVNVWGPSDLK 135 (861)
Q Consensus 58 ~~~slll~~~--~~~yLfD~GeGtqr~l~~~~i~~~ki~~IFiTH~H~DHi~GLpgll~t~~~~~~~~~~l~IyGP~gl~ 135 (861)
..+|++|..+ +..+|||||+ ++++.+. .+.+|++|||||.|+||++||++|+..+. + +..++.||||+++.
T Consensus 15 ~dn~~~l~~~~~~~~iLiD~G~--~~~l~~~--~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~--~-r~~~l~iygp~~~~ 87 (334)
T PRK02126 15 DDPGLYVDFLFERRALLFDLGD--LHHLPPR--ELLRISHIFVSHTHMDHFIGFDRLLRHCL--G-RPRRLRLFGPPGFA 87 (334)
T ss_pred CCcEEEEEECCCCeEEEEcCCC--HHHHhhc--CCCccCEEEEcCCChhHhCcHHHHHHHhc--c-CCCCeEEEECHHHH
Confidence 4578888764 7899999999 5556554 56789999999999999999999997653 2 22478999999999
Q ss_pred HHHHHHHh-hcccC------ce-eeeeecCCCCCCCCcC-------CC--CccCCCceeEeeCCcEEEEEEEcCCCCCCC
Q 002976 136 YLVDAMKS-FIPHA------AM-VHTHCFGPAPSSDASL-------PD--SAKSANHIILVDNELAKISAILLKPSCSDG 198 (861)
Q Consensus 136 ~~l~~~~~-~~~~~------~~-~~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~~~d~~i~V~~~~l~h~~~~~ 198 (861)
.++..... +.+.. .+ +...+++........+ .+ ......++.++++++++|+++++.|.
T Consensus 88 ~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~a~~~~H~---- 163 (334)
T PRK02126 88 DQVEHKLAGYTWNLVENYPTTFRVHEVELHDGRIRRALFSCRRAFAREAEEELSLPDGVLLDEPWFRVRAAFLDHG---- 163 (334)
T ss_pred HHHHHHhccccccCcccCCCceEEEEEEccCccceeeeecccccccccccccccCCCCeEEeCCCEEEEEEEccCC----
Confidence 99988665 32210 11 1111111000000000 00 00112345678889999999999997
Q ss_pred CCCCCCCCeeEEEEEeCCccCCCCHHHHHHcCCCCChhhhhhcC--------CCcEEeC--CCc----eeecCCCc---c
Q 002976 199 SPVKPGETSVIYVCELPEITGKFDPKKAVALGLKPGPKYRELQS--------GKSVKSD--TLD----IMVHPSDV---L 261 (861)
Q Consensus 199 ~~~~~~~~s~gY~~~~~~~~gkf~~~ka~~lGv~~g~~~~~L~~--------G~~V~l~--dg~----~~v~p~~v---~ 261 (861)
++|+||+|++++++ +||++|++++|||+||++++||+ |++|+++ +|+ +++.+++| +
T Consensus 164 ------vp~~gy~~~e~~~~-~~~~ek~~~~gi~~g~~~~~Lk~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~ 236 (334)
T PRK02126 164 ------IPCLAFALEEKAHI-NIDKNRLAELGLPPGPWLRELKHAVLRGEPDDTPIRVLWRDGGGEHERVRPLGELKERV 236 (334)
T ss_pred ------CceeEEEEEecCCc-CcCHHHHHHcCCCCChHHHHHHhhhhccCCCCceEEeeccCCCccceeEecHHHHHHHh
Confidence 59999999999987 89999999999999999999998 4899998 442 35777776 7
Q ss_pred CCCCCCCEEEEE-cC-CChhHHHHHhhhhccccccccCCCCcccCCceeEEEEeCC
Q 002976 262 GPSLPGPLVLLV-DC-PTESHVLELLSAESLNSYYADFSGDPQCAKTVNCIIHLSP 315 (861)
Q Consensus 262 ~~~~~g~~~~il-D~-p~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~H~~~ 315 (861)
.++.+|++|+|+ |+ ++++..+.+++ ..+++|++||++.
T Consensus 237 ~~~~~g~~v~y~gDT~~~~~~~~~l~~----------------~a~~aDlLI~Eat 276 (334)
T PRK02126 237 LRIEPGQKIGYVTDIGYTEENLARIVE----------------LAAGVDLLFIEAV 276 (334)
T ss_pred ccCCCCCEEEEECCCCCCcccHHHHHH----------------HHcCCCEEEEEcc
Confidence 899999999997 76 44433333332 3467899999987
No 17
>PRK00055 ribonuclease Z; Reviewed
Probab=99.90 E-value=1.5e-22 Score=217.54 Aligned_cols=194 Identities=30% Similarity=0.498 Sum_probs=155.8
Q ss_pred eeEEEEEeeCCCC---CCCCcEEEEEeCCcEEEEEcChhHHHHHHHcCCCcCCCCEEEECcCCcCccCcHHHHHHHHhcc
Q 002976 43 LSYVQILGTGMDT---QDTSPSVLLFFDNQRFIFNAGEGLQRFCTEHKIKLSKVDHIFLSRVCSETAGGLPGLLLTLAGI 119 (861)
Q Consensus 43 ~~~l~~LGtgs~~---~~~~~slll~~~~~~yLfD~GeGtqr~l~~~~i~~~ki~~IFiTH~H~DHi~GLpgll~t~~~~ 119 (861)
+|+|+|||||++. .|.++|++|..++.+||||||+|+++++.+.++++.++++|||||.|+||++||++++.++...
T Consensus 1 ~m~i~~LGsg~~~~~~~r~~~~~li~~~~~~iLiD~G~g~~~~l~~~~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~~ 80 (270)
T PRK00055 1 MMELTFLGTGSGVPTPTRNVSSILLRLGGELFLFDCGEGTQRQLLKTGIKPRKIDKIFITHLHGDHIFGLPGLLSTRSLS 80 (270)
T ss_pred CeEEEEEecCCCCCcCCCCCCEEEEEECCcEEEEECCHHHHHHHHHcCCCHHHCCEEEEeCCCchhhCcHHHHHHHhhhc
Confidence 3899999999853 3678999999999999999999999999999998899999999999999999999999876554
Q ss_pred CCCCCcEEEEcCccHHHHHHHHHhhcccCceeeeeecCCCCCCCCcCCCCccCCCceeEeeCCcEEEEEEEcCCCCCCCC
Q 002976 120 GDEGLSVNVWGPSDLKYLVDAMKSFIPHAAMVHTHCFGPAPSSDASLPDSAKSANHIILVDNELAKISAILLKPSCSDGS 199 (861)
Q Consensus 120 ~~~~~~l~IyGP~gl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~V~~~~l~h~~~~~~ 199 (861)
++ ..++.||||+++...++....+.
T Consensus 81 ~~-~~~l~iy~p~~~~~~~~~~~~~~------------------------------------------------------ 105 (270)
T PRK00055 81 GR-TEPLTIYGPKGIKEFVETLLRAS------------------------------------------------------ 105 (270)
T ss_pred CC-CceEEEECCccHHHHHHHHHHHh------------------------------------------------------
Confidence 42 24799999999988776544321
Q ss_pred CCCCCCCeeEEEEEeCCccCCCCHHHHHHcCCCCChhhhhhcCCCcEEeCCCceeecCCCccCCCCCCCEEEEEcCCChh
Q 002976 200 PVKPGETSVIYVCELPEITGKFDPKKAVALGLKPGPKYRELQSGKSVKSDTLDIMVHPSDVLGPSLPGPLVLLVDCPTES 279 (861)
Q Consensus 200 ~~~~~~~s~gY~~~~~~~~gkf~~~ka~~lGv~~g~~~~~L~~G~~V~l~dg~~~v~p~~v~~~~~~g~~~~ilD~p~~~ 279 (861)
..++|.+.+++..++|+.+++.+.++++++.+..++.|..+.+.++. .+.|........+|.+++|. .|+.
T Consensus 106 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~i~~~~~~~~~~~g~~~~y~--~Dt~ 176 (270)
T PRK00055 106 ------GSLGYRIAEKDKPGKLDAEKLKALGVPPGPLFGKLKRGEDVTLEDGR-IINPADVLGPPRKGRKVAYC--GDTR 176 (270)
T ss_pred ------hceeEEEEEcCCCCCCCHHHHHHCCCCCCchHHHhhCCCeEEeCCCc-EEeHHHeeccCCCCcEEEEe--CCCC
Confidence 01378887777777999999999999999999999999999998876 36777777667789999884 4444
Q ss_pred HHHHHhhhhccccccccCCCCcccCCceeEEEEeCCC
Q 002976 280 HVLELLSAESLNSYYADFSGDPQCAKTVNCIIHLSPV 316 (861)
Q Consensus 280 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~H~~~~ 316 (861)
+.+++.+ ..+++|+++|++.-
T Consensus 177 ~~~~~~~----------------~~~~~d~li~E~~~ 197 (270)
T PRK00055 177 PCEALVE----------------LAKGADLLVHEATF 197 (270)
T ss_pred CcHHHHH----------------HhCCCCEEEEeccC
Confidence 4444322 23568999999873
No 18
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.87 E-value=8.7e-22 Score=200.54 Aligned_cols=184 Identities=29% Similarity=0.502 Sum_probs=133.1
Q ss_pred eEEEeCCcchHHHHHH--HhCccchhhhhccccEEEEeccchhhhccHHHHHHHHHHhhcCCCCCCeEEEeCchHHHHHH
Q 002976 522 SLLLDCGEGTLGQLKR--RYGVEGADSAVRKLRCIWISHIHADHHAGLARILALRRDLLKGVPHEPLLVVGPGPLKRYLD 599 (861)
Q Consensus 522 ~iLlDcGegt~~qL~r--~~g~~~~~~~l~~i~~IfISH~H~DH~~GL~~ll~~~~~~~~g~~~~pl~I~~p~~~~~~L~ 599 (861)
+||||||.+.. ++.- ..-.. . ..+.++++|||||.|.||+.|++.++..+... .. .||+|+.+.+.++
T Consensus 2 ~iLiD~g~~~~-~~~~~~~~~~~-~-~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~------~~-~i~~~~~~~~~l~ 71 (194)
T PF12706_consen 2 RILIDCGPGTR-SLRLRQQIMQE-L-EDLPDIDAVFITHSHPDHIAGLPSLIPAWAKH------PK-PIYGPPETKEFLR 71 (194)
T ss_dssp EEEESE-TTHH-HHTHCHHHTCS-S-SSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHC------TT-EEEECHHHHHHHH
T ss_pred EEEEeCCCCcc-ccccccccccc-c-cccCCCCEEEECCCCccccCChHHHHHHhhcc------cc-eEEecHHHHHHHH
Confidence 69999999987 6520 11110 0 12248999999999999999999998876431 12 8999999999998
Q ss_pred H--HHhcccccceeeecccccccccccccCCCCCcccCCCCCCCCCccccccccchhhhcccccccccccCCCCCCCCCc
Q 002976 600 A--YERLEDLDMQFLHCRYTREASWNDFEGNGEPVKNLSTPGSPFSTEGLINKTEANLFAKGSCMQSVWKGPGIPVDNNA 677 (861)
Q Consensus 600 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 677 (861)
. +....... ... ... + ....++..
T Consensus 72 ~~~~~~~~~~~---------------~~~-----------------------~~~---------~--~~~~~~~~----- 97 (194)
T PF12706_consen 72 EYKFGILDLYP---------------EED-----------------------NFD---------I--IEISPGDE----- 97 (194)
T ss_dssp HHHHTHHTTCC---------------TTS-----------------------GEE---------E--EEECTTEE-----
T ss_pred hhhcccccccc---------------ccc-----------------------cee---------E--EEeccCce-----
Confidence 4 32111000 000 000 0 00011111
Q ss_pred chhhhHhHHHHHHHcCCceeeEEeeccCCCCce----EEEeccccccccCcccCCcEEEEeCCCCCChhHHhhcCCCcEE
Q 002976 678 AFPLLKNLKNVLNEAGLETLISFPVVHCPQAFG----FALKAAERINSVGKVIPGWKIVYSGDTRPCPELVEASRGATVL 753 (861)
Q Consensus 678 ~~~~~~~~~~~~~~lg~~~i~~~pv~H~~~a~G----~~i~~~~~~~~~~~~~~G~ki~YsGDT~p~~~l~~~~~~aDlL 753 (861)
.+.|.++|+++|+.|+.++++ |+|+. +|++|+|+|||.+ .+ +.++++|+|
T Consensus 98 ------------~~~~~~~i~~~~~~H~~~~~~~~~g~~i~~-----------~~~~i~~~gD~~~--~~-~~~~~~D~l 151 (194)
T PF12706_consen 98 ------------FEIGDFRITPFPANHGPPSYGGNKGFVIEP-----------DGKKIFYSGDTNY--DF-EELKNIDLL 151 (194)
T ss_dssp ------------EEETTEEEEEEEEESSSCCEEECCEEEEEE-----------TTEEEEEETSSSS--CH-HHHTTBSEE
T ss_pred ------------EEeceEEEEEEeccccccccccCceEEEec-----------CCcceEEeeccch--hh-hhhccCCEE
Confidence 135678999999999998877 99986 7899999999999 34 444999999
Q ss_pred EEeccCCCChHH-HHHhcCCCCHHHHHHHHHHcCCCEEEEeec
Q 002976 754 IHEATFEDGMME-EAIAKNHSTTKEAIDVGSSAGVYRIILTHF 795 (861)
Q Consensus 754 IhEaTf~d~~~~-~a~~~~HsT~~eA~~va~~~~ak~lvLtHf 795 (861)
|+||++.+++.+ .+....|+++++++++++++++|+++|+||
T Consensus 152 i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~il~H~ 194 (194)
T PF12706_consen 152 ILECGYIDEEEEPPARGPGHMTLEEALELAKELKAKKVILIHF 194 (194)
T ss_dssp EEEBCBSSGGHHCHHCCTTSBBHHHHHHHHHHHTTSEEEEESB
T ss_pred EEeCCCcchhhcccccCCCCCCHHHHHHHHHHcCCCEEEEECC
Confidence 999999987766 677899999999999999999999999997
No 19
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.81 E-value=7.5e-19 Score=183.93 Aligned_cols=204 Identities=19% Similarity=0.152 Sum_probs=145.5
Q ss_pred cEEEEEecCCCCCCCCCCccEEEEEEeCCceEEEeCCcc---hHHHHHHHhCccchhhhhccccEEEEeccchhhhccHH
Q 002976 492 LEIVLLGTGSSQPSKYRNVSSIYVNLFSKGSLLLDCGEG---TLGQLKRRYGVEGADSAVRKLRCIWISHIHADHHAGLA 568 (861)
Q Consensus 492 ~~i~fLGTGsa~Ps~~Rn~Ss~ll~~~~~~~iLlDcGeg---t~~qL~r~~g~~~~~~~l~~i~~IfISH~H~DH~~GL~ 568 (861)
|+|++|| +||++|+. ++..||+||+.. .. . +.. +. .++++|+|||.|.||+.|+.
T Consensus 1 m~i~~lG-----------~s~~li~~-~~~~iLiDP~~~~~~~~-~----~~~----~~-~~id~vliTH~H~DH~~~~~ 58 (228)
T PRK00685 1 MKITWLG-----------HSAFLIET-GGKKILIDPFITGNPLA-D----LKP----ED-VKVDYILLTHGHGDHLGDTV 58 (228)
T ss_pred CEEEEEc-----------ceEEEEEE-CCEEEEECCCCCCCCCC-C----CCh----hc-CcccEEEeCCCCccccccHH
Confidence 7899999 47899987 888999998542 11 1 111 11 28999999999999999987
Q ss_pred HHHHHHHHhhcCCCCCCeEEEeCchHHHHHHHHHhcccccceeeecccccccccccccCCCCCcccCCCCCCCCCccccc
Q 002976 569 RILALRRDLLKGVPHEPLLVVGPGPLKRYLDAYERLEDLDMQFLHCRYTREASWNDFEGNGEPVKNLSTPGSPFSTEGLI 648 (861)
Q Consensus 569 ~ll~~~~~~~~g~~~~pl~I~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 648 (861)
.++. ...+.||+|..+.+++.... +. ++.. +
T Consensus 59 ~~~~----------~~~~~v~~~~~~~~~~~~~~-~~----~~~~---------------------~------------- 89 (228)
T PRK00685 59 EIAK----------RTGATVIANAELANYLSEKG-VE----KTHP---------------------M------------- 89 (228)
T ss_pred HHHH----------hCCCEEEEeHHHHHHHHhcC-CC----ceee---------------------c-------------
Confidence 6532 13477999998877765431 00 0000 0
Q ss_pred cccchhhhcccccccccccCCCCCCCCCcchhhhHhHHHHHHHcCCceeeEEeeccCCC------------CceEEEecc
Q 002976 649 NKTEANLFAKGSCMQSVWKGPGIPVDNNAAFPLLKNLKNVLNEAGLETLISFPVVHCPQ------------AFGFALKAA 716 (861)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lg~~~i~~~pv~H~~~------------a~G~~i~~~ 716 (861)
.++.. .++|.++|+++|+.|... ++||+|+.
T Consensus 90 -------------------~~~~~-----------------~~~~~~~i~~~p~~H~~~~~~~~~~~~~~~~~g~~i~~- 132 (228)
T PRK00685 90 -------------------NIGGT-----------------VEFDGGKVKLTPALHSSSFIDEDGITYLGNPTGFVITF- 132 (228)
T ss_pred -------------------cCCCc-----------------EEECCEEEEEEEEEcCCCCcCCCCcccCCCceEEEEEE-
Confidence 01111 135667999999999764 58999986
Q ss_pred ccccccCcccCCcEEEEeCCCCCChhHHhhc--CCCcEEEEeccCCCChHHHHHhcCCCCHHHHHHHHHHcCCCEEEEee
Q 002976 717 ERINSVGKVIPGWKIVYSGDTRPCPELVEAS--RGATVLIHEATFEDGMMEEAIAKNHSTTKEAIDVGSSAGVYRIILTH 794 (861)
Q Consensus 717 ~~~~~~~~~~~G~ki~YsGDT~p~~~l~~~~--~~aDlLIhEaTf~d~~~~~a~~~~HsT~~eA~~va~~~~ak~lvLtH 794 (861)
++++|+|+|||.+++.+..+. .++|+++..+. ...|++++||+++++++++|++|+||
T Consensus 133 ----------~~~~i~~~GDt~~~~~~~~~~~~~~~D~~~~~~~----------~~~h~~~~ea~~~~~~~~~k~~v~~H 192 (228)
T PRK00685 133 ----------EGKTIYHAGDTGLFSDMKLIGELHKPDVALLPIG----------DNFTMGPEDAALAVELIKPKIVIPMH 192 (228)
T ss_pred ----------CCeEEEEecCccchhHHHHHHHhhCCCEEEEecC----------CccccCHHHHHHHHHhhCCCEEEEec
Confidence 678999999999998766554 47899998653 24699999999999999999999999
Q ss_pred ccCCCC-C--Cccc----ccccCCceEEeeeCcEEec
Q 002976 795 FSQRYP-K--IPVV----DETHMHKTCIAFDLMSINL 824 (861)
Q Consensus 795 fS~Ry~-~--~~~~----~~~~~~~v~~A~D~m~i~l 824 (861)
++.--. . ...+ .+ ...++.++.||+++.|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~~ 228 (228)
T PRK00685 193 YNTFPLIEQDPEKFKALVEG-LGTKVVILKPGESIEL 228 (228)
T ss_pred cCCCcCCcCCHHHHHHHHHh-cCCcEEECCCCCEeeC
Confidence 964211 1 1111 22 4568899999999875
No 20
>PRK04286 hypothetical protein; Provisional
Probab=99.78 E-value=5.8e-19 Score=190.92 Aligned_cols=250 Identities=18% Similarity=0.138 Sum_probs=146.1
Q ss_pred cEEEEEecCCCCCCCCCCccEEEEEEeCCceEEEeCCcchH-------------HHHHHHhCccchhhhhccccEEEEec
Q 002976 492 LEIVLLGTGSSQPSKYRNVSSIYVNLFSKGSLLLDCGEGTL-------------GQLKRRYGVEGADSAVRKLRCIWISH 558 (861)
Q Consensus 492 ~~i~fLGTGsa~Ps~~Rn~Ss~ll~~~~~~~iLlDcGegt~-------------~qL~r~~g~~~~~~~l~~i~~IfISH 558 (861)
|++.+||+|| +.+..+|++|+. ++..||||+|.+.. ..+... .....+.+.++++|||||
T Consensus 1 m~~~~l~s~s----~g~~~~~~~I~~-~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~id~IliTH 73 (298)
T PRK04286 1 MKIIPLASES----LGVRSMATFVET-KDVRILIDPGVSLAPRRYGLPPHPIELERLEEV--REKILEYAKKADVITISH 73 (298)
T ss_pred CEEEEEEeCC----CCceeeEEEEEE-CCeEEEEcCCCCcCccccCCCCcchhHHHHHHH--HHHhhcccccCCEEEecC
Confidence 6899999988 233358899998 78899999995531 111110 011234578999999999
Q ss_pred cchhhhccHHHHHHHHHHhhcCCCCCCeEEEeCchHHH-HHHHHHhccc-c-cceeeecccccccccccccCCCCCcccC
Q 002976 559 IHADHHAGLARILALRRDLLKGVPHEPLLVVGPGPLKR-YLDAYERLED-L-DMQFLHCRYTREASWNDFEGNGEPVKNL 635 (861)
Q Consensus 559 ~H~DH~~GL~~ll~~~~~~~~g~~~~pl~I~~p~~~~~-~L~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (861)
.|.||+.|+..++... +.+..++.||+...+.. .......... . ...+... +..
T Consensus 74 ~H~DHi~g~~~~~y~~-----~~~~~~i~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------v~~----------- 130 (298)
T PRK04286 74 YHYDHHTPFYEDPYEL-----SDEEIPKEIYKGKIVLIKDPTENINWSQRRRAPRFLKA-------VKD----------- 130 (298)
T ss_pred CccccCCCcccccccc-----ccccchHHHhcCceecccCHHHHcCHHHHhhHHhHHHH-------HHh-----------
Confidence 9999998876553110 11223566666544321 0000000000 0 0000000 000
Q ss_pred CCCCCCCCccccccccchhhhcccccccccccCCCCCCCCCcchhhhHhHHHHHHHcCCceeeEE-eeccCCC--CceEE
Q 002976 636 STPGSPFSTEGLINKTEANLFAKGSCMQSVWKGPGIPVDNNAAFPLLKNLKNVLNEAGLETLISF-PVVHCPQ--AFGFA 712 (861)
Q Consensus 636 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lg~~~i~~~-pv~H~~~--a~G~~ 712 (861)
.. ..+ .+ .++.. ..+|.++|+++ |+.|... +.||+
T Consensus 131 ---------------~~-------~~~-~~--~~g~~-----------------~~ig~~~V~~~~~v~H~~~~~~~Gy~ 168 (298)
T PRK04286 131 ---------------IA-------KKI-EY--ADGKT-----------------FRFGGTTIEFSPPVPHGADGSKLGYV 168 (298)
T ss_pred ---------------cC-------Cce-EE--CCCCE-----------------EEECCEEEEEeccCCCCCCCCccceE
Confidence 00 000 00 11111 13677788865 8899754 77776
Q ss_pred EeccccccccCcccCCcEEEEeCCCC--CChhHHhhcC--CCcEEEEec--cCCCChHHHHHhcCCCCHHHHHHHHHHcC
Q 002976 713 LKAAERINSVGKVIPGWKIVYSGDTR--PCPELVEASR--GATVLIHEA--TFEDGMMEEAIAKNHSTTKEAIDVGSSAG 786 (861)
Q Consensus 713 i~~~~~~~~~~~~~~G~ki~YsGDT~--p~~~l~~~~~--~aDlLIhEa--Tf~d~~~~~a~~~~HsT~~eA~~va~~~~ 786 (861)
+.. +++ .+|++++|+|||. +++.+.+.++ ++|+||++| +|..+. .......|++.+.+.++++. +
T Consensus 169 i~~--ri~-----~gg~~~~~~gDt~~~~~~~~~~~l~~~d~dlLi~~~~p~~lk~~-ri~~~~~h~s~~~~~~l~~~-~ 239 (298)
T PRK04286 169 IMV--RIS-----DGDESFVFASDVQGPLNDEAVEFILEKKPDVVIIGGPPTYLLGR-RLSEEDLEKGIENLEEIVKN-T 239 (298)
T ss_pred EEE--EEE-----eCCEEEEEECCCCCCCCHHHHHHHhcCCCCEEEeCCcchhhhhh-hhccccHHHHHHHHHHHHhc-C
Confidence 532 011 1678999999999 6788888776 999999998 344311 11234568888888888887 9
Q ss_pred CCEEEEe-eccCCCCCCccc-------ccccCCceEEeeeCcEEe
Q 002976 787 VYRIILT-HFSQRYPKIPVV-------DETHMHKTCIAFDLMSIN 823 (861)
Q Consensus 787 ak~lvLt-HfS~Ry~~~~~~-------~~~~~~~v~~A~D~m~i~ 823 (861)
+|+++|| |.|+... .+.+ ++...-.++.|-|+|-..
T Consensus 240 ~k~liLtHHls~~~n-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 283 (298)
T PRK04286 240 PETLILDHHLLRDKN-YREKLKELYERAEDRGVRVLTAAEFLGLE 283 (298)
T ss_pred CCEEEEeccccccCC-cHHHHHHHHHHHhhcCceEEeHHHHcCCC
Confidence 9999999 8887632 2222 122345677788887544
No 21
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.75 E-value=1e-17 Score=191.07 Aligned_cols=209 Identities=22% Similarity=0.289 Sum_probs=138.5
Q ss_pred cEEEEEecCCCCCCCCCCccEEEEEEeCCceEEEeCCcchHHHHHHHhCcc-------chhhhhccccEEEEeccchhhh
Q 002976 492 LEIVLLGTGSSQPSKYRNVSSIYVNLFSKGSLLLDCGEGTLGQLKRRYGVE-------GADSAVRKLRCIWISHIHADHH 564 (861)
Q Consensus 492 ~~i~fLGTGsa~Ps~~Rn~Ss~ll~~~~~~~iLlDcGegt~~qL~r~~g~~-------~~~~~l~~i~~IfISH~H~DH~ 564 (861)
+++++||.... .+.+|++|+. ++..+|||||.++..+. .+|.+ .+.+...++++|||||.|.||+
T Consensus 1 ~~i~~lGG~~e-----iG~n~~ll~~-~~~~iliD~G~~~~~~~--~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHi 72 (422)
T TIGR00649 1 VKIFALGGLGE-----IGKNMYVVEI-DDDVFIFDAGILFPEDA--MLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHI 72 (422)
T ss_pred CEEEEccCCCc-----cCCeEEEEEE-CCeEEEEeCCCCCCccc--ccCCccccCCHHHHHhccccCCEEEECCCChHHh
Confidence 46889987653 3467999987 78899999998753211 11211 0112246899999999999999
Q ss_pred ccHHHHHHHHHHhhcCCCCCCeEEEeCchHHHHHHHHHhcccccceeeecccccccccccccCCCCCcccCCCCCCCCCc
Q 002976 565 AGLARILALRRDLLKGVPHEPLLVVGPGPLKRYLDAYERLEDLDMQFLHCRYTREASWNDFEGNGEPVKNLSTPGSPFST 644 (861)
Q Consensus 565 ~GL~~ll~~~~~~~~g~~~~pl~I~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 644 (861)
+|++.|+... ..+.||+++.+..+++...... ++... . .+
T Consensus 73 ggl~~l~~~~---------~~~~Vy~~~~t~~~l~~~~~~~--~~~~~---------~-~~------------------- 112 (422)
T TIGR00649 73 GAVPYLFHTV---------GFPPIYGTPLTIALIKSKIKEN--KLNVR---------T-DL------------------- 112 (422)
T ss_pred CcHHHHHHhC---------CCCeEEeCHHHHHHHHHHHHhc--CCCCC---------C-ce-------------------
Confidence 9999986532 2357999999888776542200 00000 0 00
Q ss_pred cccccccchhhhcccccccccccCCCCCCCCCcchhhhHhHHHHHHHcC-CceeeEEeeccC-CCCceEEEecccccccc
Q 002976 645 EGLINKTEANLFAKGSCMQSVWKGPGIPVDNNAAFPLLKNLKNVLNEAG-LETLISFPVVHC-PQAFGFALKAAERINSV 722 (861)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lg-~~~i~~~pv~H~-~~a~G~~i~~~~~~~~~ 722 (861)
.. ..++..+ ++| .++|+++++.|. ++++||+++.
T Consensus 113 ------------------~~--~~~~~~~-----------------~ig~~~~v~~~~~~H~~p~s~g~~i~~------- 148 (422)
T TIGR00649 113 ------------------LE--IHEGEPI-----------------ETGENHTIEFIRITHSIPDSVGFALHT------- 148 (422)
T ss_pred ------------------EE--eCCCCEE-----------------EeCCceEEEEEECCCCCcceEEEEEEe-------
Confidence 00 0112111 354 478999999996 4699999986
Q ss_pred CcccCCcEEEEeCCCCCC--------h---hHHhhc-CCCcEEEEeccCCCChHHHHHhcCCCCHHHHHHHHHHcCCCEE
Q 002976 723 GKVIPGWKIVYSGDTRPC--------P---ELVEAS-RGATVLIHEATFEDGMMEEAIAKNHSTTKEAIDVGSSAGVYRI 790 (861)
Q Consensus 723 ~~~~~G~ki~YsGDT~p~--------~---~l~~~~-~~aDlLIhEaTf~d~~~~~a~~~~HsT~~eA~~va~~~~ak~l 790 (861)
++.+++||||++.. . .+.+.+ +++|+||+|+|+.+... .....|.+.+++.+++++++ +++
T Consensus 149 ----~~~~ivytGD~~~~~~~~~~~~~d~~~l~~~~~~g~d~Li~EsT~~~~~~--~~~~e~~~~~~i~~~~~~~~-~~v 221 (422)
T TIGR00649 149 ----PLGYIVYTGDFKFDNTPVIGEPPDLNRIAEYGKKGVLLLISDSTNVENPG--FTPSEAKVLEQLNDIFKNAK-GRV 221 (422)
T ss_pred ----CCcEEEECCCcCCCCCccCCcccCHHHHHhhcccCeEEEEECCCCCCCCC--CCCCHHHHHHHHHHHHHhCC-CEE
Confidence 56789999999752 1 233433 57999999999885211 11345777788888887776 569
Q ss_pred EEeeccCCC
Q 002976 791 ILTHFSQRY 799 (861)
Q Consensus 791 vLtHfS~Ry 799 (861)
+++||+.-.
T Consensus 222 iv~~fa~~~ 230 (422)
T TIGR00649 222 IVATFASNI 230 (422)
T ss_pred EEEEccccH
Confidence 999998543
No 22
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=99.70 E-value=5e-16 Score=170.46 Aligned_cols=203 Identities=17% Similarity=0.209 Sum_probs=135.2
Q ss_pred CCccEEEEEecCCCCCCCCCCccEEEEEEeCCceEEEeC--Ccch----------HHHHHHHhCcc------------ch
Q 002976 489 RDDLEIVLLGTGSSQPSKYRNVSSIYVNLFSKGSLLLDC--GEGT----------LGQLKRRYGVE------------GA 544 (861)
Q Consensus 489 ~~~~~i~fLGTGsa~Ps~~Rn~Ss~ll~~~~~~~iLlDc--Gegt----------~~qL~r~~g~~------------~~ 544 (861)
.+.+++++|| +++++|+.+++.+||+|. |.|. ..|+.+..|.. ..
T Consensus 35 ~~~~~~~wlG-----------~a~~li~~~~g~~ILiD~~~~~g~~~~~~~~~~~~~~~~~~~G~~~~~P~lr~~p~~id 103 (355)
T PRK11709 35 PGTFAMWWLG-----------CTGIWLKTEGGTNVCVDLWCGTGKQTHGNPLMKRGHQMARMAGVRKLQPNLRTQPFVLD 103 (355)
T ss_pred CCcEEEEEec-----------ceEEEEEcCCCcEEEEeecCCCCCccccccccccccchhhhccccccCCCCCCCCcccC
Confidence 3678999998 688999987788999994 3332 11233323321 11
Q ss_pred hhhhccccEEEEeccchhhhccHHHHHHHHHHhhcCCCCCCeEEEeCchHHHHHHHHHhcccccceeeeccccccccccc
Q 002976 545 DSAVRKLRCIWISHIHADHHAGLARILALRRDLLKGVPHEPLLVVGPGPLKRYLDAYERLEDLDMQFLHCRYTREASWND 624 (861)
Q Consensus 545 ~~~l~~i~~IfISH~H~DH~~GL~~ll~~~~~~~~g~~~~pl~I~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (861)
...+.+||+|+|||.|.||+ ++..+..... .......+++|.++.+++..+..- . .+....
T Consensus 104 p~~i~~IDaVLiTH~H~DHl-D~~tl~~l~~-----~~~~~~~~v~p~~~~~~~~~~Gvp-~--~rv~~v---------- 164 (355)
T PRK11709 104 PFAIREIDAVLATHDHSDHI-DVNVAAAVLQ-----NCADHVKFIGPQACVDLWIGWGVP-K--ERCIVV---------- 164 (355)
T ss_pred HHHCCCCCEEEECCCccccc-ChHHHHHHHh-----hcCCCcEEEEcHHHHHHHHhcCCC-c--ceEEEe----------
Confidence 23568999999999999996 5555532211 112357799999988776654210 0 000000
Q ss_pred ccCCCCCcccCCCCCCCCCccccccccchhhhcccccccccccCCCCCCCCCcchhhhHhHHHHHHHcCCceeeEEeecc
Q 002976 625 FEGNGEPVKNLSTPGSPFSTEGLINKTEANLFAKGSCMQSVWKGPGIPVDNNAAFPLLKNLKNVLNEAGLETLISFPVVH 704 (861)
Q Consensus 625 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lg~~~i~~~pv~H 704 (861)
.++..+ .+|.++|+++|+.|
T Consensus 165 -------------------------------------------~~Ge~i-----------------~ig~v~It~lpa~h 184 (355)
T PRK11709 165 -------------------------------------------KPGDVV-----------------KVKDIKIHALDSFD 184 (355)
T ss_pred -------------------------------------------cCCCcE-----------------EECCEEEEEEeccc
Confidence 111111 24556666666644
Q ss_pred C----------------------CCCceEEEeccccccccCcccCCcEEEEeCCCCCChhHHhhcC--CCcEEEEeccCC
Q 002976 705 C----------------------PQAFGFALKAAERINSVGKVIPGWKIVYSGDTRPCPELVEASR--GATVLIHEATFE 760 (861)
Q Consensus 705 ~----------------------~~a~G~~i~~~~~~~~~~~~~~G~ki~YsGDT~p~~~l~~~~~--~aDlLIhEaTf~ 760 (861)
. ..++||+|+. +|.+|+|+|||.+++.+.+.++ ++|+++....-.
T Consensus 185 ~~~~i~~p~~h~~~~~~~~~d~~~~~~gyvie~-----------~~~tvy~sGDT~~~~~~~~i~~~~~iDvall~iG~~ 253 (355)
T PRK11709 185 RTALVTLPADGKAAGGVLPDDMDRRAVNYLFKT-----------PGGNIYHSGDSHYSNYFAKHGNDHQIDVALGSYGEN 253 (355)
T ss_pred cccccccccccccccccccccCCcceEEEEEEe-----------CCeEEEEeCCCCccHHHHHHHhcCCCCEEEecCCCC
Confidence 2 1358999986 6789999999999998887765 689999865421
Q ss_pred CChHHHHHhcCCCCHHHHHHHHHHcCCCEEEEeeccC
Q 002976 761 DGMMEEAIAKNHSTTKEAIDVGSSAGVYRIILTHFSQ 797 (861)
Q Consensus 761 d~~~~~a~~~~HsT~~eA~~va~~~~ak~lvLtHfS~ 797 (861)
. .....|++++||+++++.++++++|++|+.-
T Consensus 254 p-----~~~~~hm~p~ea~~~a~~l~ak~vIpiH~dt 285 (355)
T PRK11709 254 P-----RGITDKMTSIDILRMAESLNAKVVIPVHHDI 285 (355)
T ss_pred C-----CCCcCCCCHHHHHHHHHHcCCCEEEEEChhh
Confidence 1 1135699999999999999999999999953
No 23
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.65 E-value=6.4e-16 Score=167.61 Aligned_cols=182 Identities=10% Similarity=0.046 Sum_probs=112.6
Q ss_pred eEEEEEeeCC----CC-------------------CCCCcEEEEEeCCc-EEEEEcChhHHHHHHHc-------CCCcCC
Q 002976 44 SYVQILGTGM----DT-------------------QDTSPSVLLFFDNQ-RFIFNAGEGLQRFCTEH-------KIKLSK 92 (861)
Q Consensus 44 ~~l~~LGtgs----~~-------------------~~~~~slll~~~~~-~yLfD~GeGtqr~l~~~-------~i~~~k 92 (861)
|+|+|||||+ |. .|..+|++|+.++. ++|||||+|+..++.+. ++++.+
T Consensus 1 m~lt~LGtg~~~g~P~~~C~C~~C~~ar~~~~~~~~R~~ss~li~~~g~~~iLiD~G~g~~~ql~~~~~~~~~~g~~~~~ 80 (302)
T PRK05184 1 MRIIVLGSAAGGGFPQWNCNCPNCRGARAGTIRAKPRTQSSIAVSADGEDWVLLNASPDIRQQIQATPALQPARGLRDTP 80 (302)
T ss_pred CEEEEEEecCCCCCCcCCCCchhchhhhcCCCcCCcccccEEEEEcCCCEEEEEECChhHHHHHHhchhcCccccCCccc
Confidence 7899999974 33 25678999987664 58999999999999886 567779
Q ss_pred CCEEEECcCCcCccCcHHHHHHHHhccCCCCCcEEEEcCccHHHHHHHHHhhcccCceeeeeecCCCCCCCCcCCCCccC
Q 002976 93 VDHIFLSRVCSETAGGLPGLLLTLAGIGDEGLSVNVWGPSDLKYLVDAMKSFIPHAAMVHTHCFGPAPSSDASLPDSAKS 172 (861)
Q Consensus 93 i~~IFiTH~H~DHi~GLpgll~t~~~~~~~~~~l~IyGP~gl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (861)
+++|||||.|+||+.||+.|.. ..++.||||+++.+.+.....++.... .+. . ..+.+
T Consensus 81 ldav~lTH~H~DHi~Gl~~l~~--------~~~l~Vyg~~~~~~~l~~~~~~f~~~~-----~~~---~--~~~~~---- 138 (302)
T PRK05184 81 IAAVVLTDGQIDHTTGLLTLRE--------GQPFPVYATPAVLEDLSTGFPIFNVLD-----HYG---G--VQRRP---- 138 (302)
T ss_pred ccEEEEeCCchhhhhChHhhcc--------CCCeEEEeCHHHHHHHHhcCCcccccc-----ccc---c--eeeEE----
Confidence 9999999999999999987621 237999999998877754211110000 000 0 00000
Q ss_pred CCceeEeeC---CcEEEEEEEcCCCCC---CCCCCCCCCCeeEEEEE--eCCccCCCCHHHHHHcCCCCChhhhhhcCCC
Q 002976 173 ANHIILVDN---ELAKISAILLKPSCS---DGSPVKPGETSVIYVCE--LPEITGKFDPKKAVALGLKPGPKYRELQSGK 244 (861)
Q Consensus 173 ~~~~~~~~d---~~i~V~~~~l~h~~~---~~~~~~~~~~s~gY~~~--~~~~~gkf~~~ka~~lGv~~g~~~~~L~~G~ 244 (861)
..++..++. ++++|+++++.|..- +.....+..+|+||+|+ ..+++-.|-.+- .++ + +.+..+.+|.
T Consensus 139 i~~~~~~~i~~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyri~~~~~g~~~~y~tD~---~~~-~-~~~~~~~~ga 213 (302)
T PRK05184 139 IALDGPFAVPGLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGLRIEDRATGKRLFYAPGL---AEV-T-DALRARLAGA 213 (302)
T ss_pred ecCCCceEecCCCCcEEEEEEcCCCCCcccccccCCCCCCeEEEEEEecCCCcEEEEECCC---CCC-C-HHHHHHHhcC
Confidence 111122332 479999999988520 00000134579999996 444432333231 122 2 3344555566
Q ss_pred cEEeCCCc
Q 002976 245 SVKSDTLD 252 (861)
Q Consensus 245 ~V~l~dg~ 252 (861)
++.+-|.+
T Consensus 214 Dlli~da~ 221 (302)
T PRK05184 214 DCVLFDGT 221 (302)
T ss_pred CEEEEeCC
Confidence 66666653
No 24
>PRK02113 putative hydrolase; Provisional
Probab=99.61 E-value=3.7e-15 Score=158.45 Aligned_cols=142 Identities=13% Similarity=0.157 Sum_probs=100.0
Q ss_pred eEEEEEeeCCC----C---------------CCCCcEEEEEeCCcEEEEEcChhHHHHHHHcCCCcCCCCEEEECcCCcC
Q 002976 44 SYVQILGTGMD----T---------------QDTSPSVLLFFDNQRFIFNAGEGLQRFCTEHKIKLSKVDHIFLSRVCSE 104 (861)
Q Consensus 44 ~~l~~LGtgs~----~---------------~~~~~slll~~~~~~yLfD~GeGtqr~l~~~~i~~~ki~~IFiTH~H~D 104 (861)
|+++|||||+. . .|..+|++|+.++..+|||||+|+++++.+. .+.++++|||||.|+|
T Consensus 1 m~~~~lGtg~~~g~P~~~c~c~~C~~~~~~~~R~~~s~li~~~~~~iLiD~G~g~~~~l~~~--~~~~id~I~lTH~H~D 78 (252)
T PRK02113 1 MKIRILGSGTSTGVPEIGCTCPVCTSKDPRDNRLRTSALVETEGARILIDCGPDFREQMLRL--PFGKIDAVLITHEHYD 78 (252)
T ss_pred CEEEEEEeCCCCCeecCCCCCccCCCCCCCCcceeeEEEEEECCeEEEEECCchHHHHHHhc--CccccCEEEECCCChh
Confidence 68999999952 1 2567899999999999999999999988775 5678999999999999
Q ss_pred ccCcHHHHHHHHhccCCCCCcEEEEcCccHHHHHHHHHhhcccCceeeeeecCCCCCCCCcCCCCccCCCceeEeeCCcE
Q 002976 105 TAGGLPGLLLTLAGIGDEGLSVNVWGPSDLKYLVDAMKSFIPHAAMVHTHCFGPAPSSDASLPDSAKSANHIILVDNELA 184 (861)
Q Consensus 105 Hi~GLpgll~t~~~~~~~~~~l~IyGP~gl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 184 (861)
|++||+.+... . . ..++.||||+++...+.....+.+.. ..++. .....+. ...++..++.+++
T Consensus 79 H~~gl~~l~~~-~--~--~~~~~i~~~~~~~~~l~~~~~~~~~~-----~~~~~--~~~~~~~----~~~~g~~~~~~~~ 142 (252)
T PRK02113 79 HVGGLDDLRPF-C--R--FGEVPIYAEQYVAERLRSRMPYCFVE-----HSYPG--VPNIPLR----EIEPDRPFLVNHT 142 (252)
T ss_pred hhCCHHHHHHh-c--c--CCCceEEECHHHHHHHHhhCCeeecc-----CCCCC--CcceeeE----EcCCCCCEEECCe
Confidence 99999987532 1 1 13688999998877766543221110 00100 0000011 1223345667889
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCeeEEEE
Q 002976 185 KISAILLKPSCSDGSPVKPGETSVIYVC 212 (861)
Q Consensus 185 ~V~~~~l~h~~~~~~~~~~~~~s~gY~~ 212 (861)
+|+++++.|.. .+++||++
T Consensus 143 ~i~~~~~~H~~---------~~~~gy~i 161 (252)
T PRK02113 143 EVTPLRVMHGK---------LPILGYRI 161 (252)
T ss_pred EEEEEEecCCC---------ccEEEEEe
Confidence 99999999963 47899999
No 25
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=99.58 E-value=2e-14 Score=153.96 Aligned_cols=83 Identities=22% Similarity=0.253 Sum_probs=65.8
Q ss_pred cCCCCceEEEeccccccccCcccCCcEEEEeCCCCCChh----HHhhcCCCcEEEEeccCCCChHHHHHhcCCCCHHHHH
Q 002976 704 HCPQAFGFALKAAERINSVGKVIPGWKIVYSGDTRPCPE----LVEASRGATVLIHEATFEDGMMEEAIAKNHSTTKEAI 779 (861)
Q Consensus 704 H~~~a~G~~i~~~~~~~~~~~~~~G~ki~YsGDT~p~~~----l~~~~~~aDlLIhEaTf~d~~~~~a~~~~HsT~~eA~ 779 (861)
|...+.||.+++ .+.+++|++||...+. ........++++-++++.+.- ...+|.++++|+
T Consensus 155 ~~~~~~g~~~~~-----------~~~~vay~~Dt~~~~~~~d~~l~~~~~~~~~~~~~~~~~~g----h~~~h~~~~~a~ 219 (269)
T COG1235 155 HGGTDIGYGLEW-----------RIGDVAYLTDTELFPSNHDVELLDNGLYPLDIKDRILPDPG----HLSNHLSAEEAL 219 (269)
T ss_pred cccccceeeeee-----------eeccEEEccccccCcchhHHHHhcCCccceeeeeccccccC----CCCCchhHHHHH
Confidence 334567887776 3468999999985433 344456789999999988752 368899999999
Q ss_pred HHHHHcCCCEEEEeeccCCCCC
Q 002976 780 DVGSSAGVYRIILTHFSQRYPK 801 (861)
Q Consensus 780 ~va~~~~ak~lvLtHfS~Ry~~ 801 (861)
++++..++|+++|||+|+.++.
T Consensus 220 ~~~~~~~~~rivLtHls~~~~~ 241 (269)
T COG1235 220 ELIEKLKPKRLVLTHLSHKNDD 241 (269)
T ss_pred HHHHhCCcceEEEEecCCCCCH
Confidence 9999999999999999998874
No 26
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=99.58 E-value=3.5e-15 Score=119.15 Aligned_cols=60 Identities=58% Similarity=0.997 Sum_probs=53.9
Q ss_pred EEEeeCCCCCCCC-cEEEEEeCCcEEEE-EcChhHHHHHHHcCCCcCCCCEEEECcCC-cCccCc
Q 002976 47 QILGTGMDTQDTS-PSVLLFFDNQRFIF-NAGEGLQRFCTEHKIKLSKVDHIFLSRVC-SETAGG 108 (861)
Q Consensus 47 ~~LGtgs~~~~~~-~slll~~~~~~yLf-D~GeGtqr~l~~~~i~~~ki~~IFiTH~H-~DHi~G 108 (861)
|++++. +.++. ||++|++|++|||| |||||+||.+.++++++.|+++||||+.+ |+++||
T Consensus 1 qvvt~~--s~DT~~p~l~l~~d~~rYlFGn~gEGtQR~~~e~~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 1 QVVTTP--SADTSGPSLLLFFDSRRYLFGNCGEGTQRACNEHKIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred CeeecC--CCCCCCCEEEEEeCCceEEeccCCcHHHHHHHHcCCCccccceEEECCCCcccccCC
Confidence 356654 34454 99999999999999 99999999999999999999999999999 999998
No 27
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.54 E-value=9.1e-14 Score=163.51 Aligned_cols=199 Identities=17% Similarity=0.206 Sum_probs=116.7
Q ss_pred CCccEEEEEecCCCCCCCCCCccEEEEEEeCCceEEEeCCcchHHHHHHHhCc-cchhhhhccccEEEEeccchhhhccH
Q 002976 489 RDDLEIVLLGTGSSQPSKYRNVSSIYVNLFSKGSLLLDCGEGTLGQLKRRYGV-EGADSAVRKLRCIWISHIHADHHAGL 567 (861)
Q Consensus 489 ~~~~~i~fLGTGsa~Ps~~Rn~Ss~ll~~~~~~~iLlDcGegt~~qL~r~~g~-~~~~~~l~~i~~IfISH~H~DH~~GL 567 (861)
.+.|+|++||+++.+. .||++|+. ++..||||||...-......+.. ......+.+|++|||||+|.||++||
T Consensus 172 ~~~m~i~~LGg~~eVG-----~Sc~Ll~~-~~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~L 245 (630)
T TIGR03675 172 DRWVRVTALGGFREVG-----RSALLLST-PESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLV 245 (630)
T ss_pred CCeEEEEEEecCCccC-----CCEEEEEE-CCCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHhhH
Confidence 3469999999887653 58999998 78899999997653211111111 10111257899999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCeEEEeCchHHHHHHHHHhcccccceeeecccccccccccccCCCCCcccCCCCCCCCCcccc
Q 002976 568 ARILALRRDLLKGVPHEPLLVVGPGPLKRYLDAYERLEDLDMQFLHCRYTREASWNDFEGNGEPVKNLSTPGSPFSTEGL 647 (861)
Q Consensus 568 ~~ll~~~~~~~~g~~~~pl~I~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 647 (861)
+.|+.. + .. ..||++..+.+++.....-. +++. .. .+. ..+|..+..
T Consensus 246 P~L~k~------g-~~--gpIY~T~pT~~l~~~ll~D~---~~i~---~~---------~g~---------~~~y~~~dv 292 (630)
T TIGR03675 246 PLLFKY------G-YD--GPVYCTPPTRDLMTLLQLDY---IDVA---QR---------EGK---------KPPYSSKDV 292 (630)
T ss_pred HHHHHh------C-CC--CceeecHHHHHHHHHHHHHH---HHHH---Hh---------cCC---------CCCCCHHHH
Confidence 988642 2 11 24888887766554321100 0000 00 000 000110000
Q ss_pred ccccchhhhcccccccccccCCCCCCCCCcchhhhHhHHHHHHHc-CCceeeEEeeccCCCCceEEEeccccccccCccc
Q 002976 648 INKTEANLFAKGSCMQSVWKGPGIPVDNNAAFPLLKNLKNVLNEA-GLETLISFPVVHCPQAFGFALKAAERINSVGKVI 726 (861)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l-g~~~i~~~pv~H~~~a~G~~i~~~~~~~~~~~~~ 726 (861)
. ..+.....+ ..+..+ .+ +.++++++++.|+.++..+.+...+
T Consensus 293 ----~-~~~~~~~~l-----~yg~~~-----------------~i~~~i~vt~~~AGHilGsa~~~~~i~d--------- 336 (630)
T TIGR03675 293 ----R-EALKHTITL-----DYGEVT-----------------DIAPDIKLTFYNAGHILGSAIAHLHIGD--------- 336 (630)
T ss_pred ----H-HHHhccEEe-----CCCCeE-----------------EecCCEEEEEecCccccCceEEEEEECC---------
Confidence 0 000000000 011110 12 4578999999999998888776421
Q ss_pred CCcEEEEeCCCCCChh-HH----hhcCCCcEEEEeccCCCC
Q 002976 727 PGWKIVYSGDTRPCPE-LV----EASRGATVLIHEATFEDG 762 (861)
Q Consensus 727 ~G~ki~YsGDT~p~~~-l~----~~~~~aDlLIhEaTf~d~ 762 (861)
.+.+|+||||+++... +. ....++|+||+|+||.+.
T Consensus 337 g~~~IvYTGD~~~~~~~ll~~a~~~~~~vD~LI~ESTYg~~ 377 (630)
T TIGR03675 337 GLYNIVYTGDFKYEKTRLLDPAVNKFPRVETLIMESTYGGR 377 (630)
T ss_pred CCEEEEEeCCCCCCCCcCccchhhcCCCCCEEEEeCccCCC
Confidence 3469999999997642 22 223579999999999874
No 28
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=99.54 E-value=2.5e-14 Score=149.19 Aligned_cols=155 Identities=17% Similarity=0.166 Sum_probs=104.9
Q ss_pred EEEEEeCCcEEEEE-cChhHHHHHHHcCCCcCCCCEEEECcCCcCccCcHHHHHHHHhccCCCCCcEEEEcCccHHHHHH
Q 002976 61 SVLLFFDNQRFIFN-AGEGLQRFCTEHKIKLSKVDHIFLSRVCSETAGGLPGLLLTLAGIGDEGLSVNVWGPSDLKYLVD 139 (861)
Q Consensus 61 slll~~~~~~yLfD-~GeGtqr~l~~~~i~~~ki~~IFiTH~H~DHi~GLpgll~t~~~~~~~~~~l~IyGP~gl~~~l~ 139 (861)
+.++.+...++||| +|+|....+.+ ++.++++|||||.|.||++||+.++.+....+....++.||||+++...++
T Consensus 11 ~t~~~~~~~~ilfD~ag~g~~~~l~~---k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~~ve 87 (277)
T TIGR02650 11 FSTIIYSPEEIIFDAAEEGSSTLGGK---KVAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGNAAEE 87 (277)
T ss_pred eEEEEECchhheehhhcccchhHHhh---hHhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchhHHHH
Confidence 34556678999999 99999887753 456799999999999999999988876555533335789999999999888
Q ss_pred HHHhhcccCceeeeeecCCCCCCCCcCCCCccCCCceeEeeC-C--cEEEEEEEcCCCCCCCCCCCCCCCeeEEEEEeCC
Q 002976 140 AMKSFIPHAAMVHTHCFGPAPSSDASLPDSAKSANHIILVDN-E--LAKISAILLKPSCSDGSPVKPGETSVIYVCELPE 216 (861)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~--~i~V~~~~l~h~~~~~~~~~~~~~s~gY~~~~~~ 216 (861)
.+..++....- ...+.. .++. ......++-. + ...|.++++.|.. .+++|+||.|....
T Consensus 88 ~~~~~~~~~~~--~~~~~~------~~~~---~~~~e~~~~r~~~~~~~V~~f~t~H~v-------~~~~s~GY~~~~~r 149 (277)
T TIGR02650 88 ETSEFIKAANE--DLFFFF------NHHL---EEEDERFFLDAAGFFKRVQPFFRKHHA-------SEESFFGHHFEERR 149 (277)
T ss_pred HHHHHHHHhhh--hhccCc------ccCC---CCCCcEEEeecCCccEEEecCcccccc-------CccCccCeEEEEEe
Confidence 66665532210 011110 0110 0111223333 2 4889999999973 13589999999886
Q ss_pred ccCCCCHHHHHHcCCCCChhhhhhcC
Q 002976 217 ITGKFDPKKAVALGLKPGPKYRELQS 242 (861)
Q Consensus 217 ~~gkf~~~ka~~lGv~~g~~~~~L~~ 242 (861)
++ -|-+-.|++ |..+++|+.
T Consensus 150 ~K-----LK~E~~~l~-~~eI~~l~~ 169 (277)
T TIGR02650 150 KK-----KEEEFGGDD-KKEARLLKE 169 (277)
T ss_pred ec-----chHhHcCCC-HHHHHHHHH
Confidence 65 555677886 467777764
No 29
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.52 E-value=1.1e-13 Score=146.82 Aligned_cols=164 Identities=18% Similarity=0.164 Sum_probs=106.7
Q ss_pred eEEEEEeeCCC------------------CC---CCCcEEEEEeCCcEEEEEcChhHHHHHHHcCCCcCCCCEEEECcCC
Q 002976 44 SYVQILGTGMD------------------TQ---DTSPSVLLFFDNQRFIFNAGEGLQRFCTEHKIKLSKVDHIFLSRVC 102 (861)
Q Consensus 44 ~~l~~LGtgs~------------------~~---~~~~slll~~~~~~yLfD~GeGtqr~l~~~~i~~~ki~~IFiTH~H 102 (861)
|+++|||||++ .+ |.++|++|..++..+|||||.+... ..+.+.++++|||||.|
T Consensus 1 m~~~~lGs~~~~~~p~~~c~c~~c~~~~~~p~~~r~~~s~li~~~~~~iLiD~G~~~~~----~~~~~~~i~~i~iTH~H 76 (250)
T PRK11244 1 MRLTLLGTGGAQGVPVFGCECAACARARRDPAYRRRPCSALIEFNGARTLIDAGLPDLA----ERFPPGSLQQILLTHYH 76 (250)
T ss_pred CEEEEEeccCCCCccCCCccchhhhhhhcCCCCCcceeEEEEEECCCEEEEECCChHHh----hcCCcccCCEEEEccCc
Confidence 78999999975 22 5677899999999999999976432 23566799999999999
Q ss_pred cCccCcHHHHHHHHhccCCCCCcEEEEcCccHHHHHHHHHhhcccCceeeeeecCCCCCCCCcCCCCccCCCceeEeeCC
Q 002976 103 SETAGGLPGLLLTLAGIGDEGLSVNVWGPSDLKYLVDAMKSFIPHAAMVHTHCFGPAPSSDASLPDSAKSANHIILVDNE 182 (861)
Q Consensus 103 ~DHi~GLpgll~t~~~~~~~~~~l~IyGP~gl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 182 (861)
+||++||+.+.. .. ..++.||||++...... .... .... .+.. ...++..++.+
T Consensus 77 ~DHi~gl~~l~~----~~--~~~i~i~~~~~~~~~~~-~~~~---~~~~---~~~~-------------~l~~~~~~~~~ 130 (250)
T PRK11244 77 MDHVQGLFPLRW----GV--GDPIPVYGPPDPEGCDD-LFKH---PGIL---DFSH-------------PLEPFEPFDLG 130 (250)
T ss_pred hhhhccHHHHHh----hc--CCceeEEeCCchhhHHH-HhcC---cccc---cccc-------------ccCCCCCeeEC
Confidence 999999976632 11 13688999998643221 1111 0000 0000 01223455667
Q ss_pred cEEEEEEEcCCCCCCCCCCCCCCCeeEEEEEeCCccCCCCHHHHHHcCCCCChhhhhhc-CCCcEEeCCC
Q 002976 183 LAKISAILLKPSCSDGSPVKPGETSVIYVCELPEITGKFDPKKAVALGLKPGPKYRELQ-SGKSVKSDTL 251 (861)
Q Consensus 183 ~i~V~~~~l~h~~~~~~~~~~~~~s~gY~~~~~~~~gkf~~~ka~~lGv~~g~~~~~L~-~G~~V~l~dg 251 (861)
+++|+++++.|.. +++||+|+.++++--|-.| .+..+......++ .|.++.+.+.
T Consensus 131 ~~~I~~~~~~H~~----------~s~g~~i~~~~~~i~ysgD----t~~~~~~~~~~~~~~~~Dlli~e~ 186 (250)
T PRK11244 131 GLQVTPLPLNHSK----------LTFGYLLETAHSRVAYLTD----TVGLPEDTLKFLRNNQPDLLVLDC 186 (250)
T ss_pred CEEEEEEeeCCCc----------ceeEEEEecCCeEEEEEcC----CCCCCHHHHHHHhcCCCCEEEEeC
Confidence 8999999999963 7999999987655444443 2322222333332 4666766655
No 30
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.47 E-value=2.4e-13 Score=146.85 Aligned_cols=178 Identities=8% Similarity=0.003 Sum_probs=109.6
Q ss_pred CCCcEEEEEe-CCcEEEEEcChhHHHHHHHc-------CCCcCCCCEEEECcCCcCccCcHHHHHHHHhccCCCCCcEEE
Q 002976 57 DTSPSVLLFF-DNQRFIFNAGEGLQRFCTEH-------KIKLSKVDHIFLSRVCSETAGGLPGLLLTLAGIGDEGLSVNV 128 (861)
Q Consensus 57 ~~~~slll~~-~~~~yLfD~GeGtqr~l~~~-------~i~~~ki~~IFiTH~H~DHi~GLpgll~t~~~~~~~~~~l~I 128 (861)
|+.+|++|.. ++..+|||||.++++++.+. ++.+.+|++|||||.|.||+.||+-|. +..++.|
T Consensus 36 R~rss~ll~~~g~~~iLID~Gpd~r~ql~~~~~~~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~--------~~~~lpV 107 (302)
T TIGR02108 36 RTQSSIAVSADGERWVLLNASPDIRQQIQATPALHPQRGLRHTPIAGVVLTDGEIDHTTGLLTLR--------EGQPFTL 107 (302)
T ss_pred ccccEEEEEeCCCEEEEEECCHHHHHHHHhCcccccccCCCcccCCEEEEeCCCcchhhCHHHHc--------CCCCceE
Confidence 4568999976 44588999999999998877 677899999999999999999998763 1237899
Q ss_pred EcCccHHHHHHHHHhhcccCce--eeeeecCCCCCCCCcCCCCccCCCceeEe---eCCcEEEEEEEcCCCCCCCCCC--
Q 002976 129 WGPSDLKYLVDAMKSFIPHAAM--VHTHCFGPAPSSDASLPDSAKSANHIILV---DNELAKISAILLKPSCSDGSPV-- 201 (861)
Q Consensus 129 yGP~gl~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~i~V~~~~l~h~~~~~~~~-- 201 (861)
||++++...+... ..+..... +..+.+.. .....+ ..++++|++++++|.. ...+
T Consensus 108 ya~~~t~~~L~~~-~~~~~~~~~~~~~~~i~~---------------~~~~~~~~~~~~g~~I~~f~v~h~~--~~~~~H 169 (302)
T TIGR02108 108 YATEMVLQDLSDN-PIFNVLDHWNVRRQPIAL---------------NEKFEFRIVARPGLEFTPFAVPGKA--PLYSEH 169 (302)
T ss_pred EECHHHHHHHHhC-CCccccchhhccceEecC---------------CCcEEecccccCCEEEEEEEcCCCC--Cccccc
Confidence 9999988777531 11100000 00011110 011111 1245999999999531 0000
Q ss_pred ----CCCCCeeEEEEEeC--CccCCCCHHHHHHcCCCCChhhhhhcCCCcEEeCCCceeecCCC-ccCCCCC
Q 002976 202 ----KPGETSVIYVCELP--EITGKFDPKKAVALGLKPGPKYRELQSGKSVKSDTLDIMVHPSD-VLGPSLP 266 (861)
Q Consensus 202 ----~~~~~s~gY~~~~~--~~~gkf~~~ka~~lGv~~g~~~~~L~~G~~V~l~dg~~~v~p~~-v~~~~~~ 266 (861)
.+..+++||+|+.. +++--|..| .|..+..++..|+ |.++.+-|.+ .+++++ +...++|
T Consensus 170 ~~~d~~~~~~~Gy~i~~~~~g~~~~y~tD----~g~~~~~~~~~l~-~~d~liida~-~~~d~e~l~~g~yp 235 (302)
T TIGR02108 170 RAGDPHPGDTLGLKIEDGTTGKRLFYIPG----CAEITDDLKARMA-GADLVFFDGT-LWRDDEMIRAGVGT 235 (302)
T ss_pred cccCCCCCCcEEEEEEeCCCCcEEEEECC----CCCCCHHHHHHHh-CCCEEEEeCC-CCCcHHHHhcCCCC
Confidence 11257899999987 555344444 5655545555555 5555555664 234444 4444444
No 31
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=1.2e-12 Score=148.27 Aligned_cols=190 Identities=21% Similarity=0.257 Sum_probs=117.5
Q ss_pred cEEEEEecCCCCCCCCCCccEEEEEEeCCceEEEeCCcchHHHHHHHhCccchhhhhccccEEEEeccchhhhccHHHHH
Q 002976 492 LEIVLLGTGSSQPSKYRNVSSIYVNLFSKGSLLLDCGEGTLGQLKRRYGVEGADSAVRKLRCIWISHIHADHHAGLARIL 571 (861)
Q Consensus 492 ~~i~fLGTGsa~Ps~~Rn~Ss~ll~~~~~~~iLlDcGegt~~qL~r~~g~~~~~~~l~~i~~IfISH~H~DH~~GL~~ll 571 (861)
|++.|+|++..++ ++|.+|+. ++..||+|||.-...+- ..+.... ...++|+++|||+|.||+++++.+.
T Consensus 1 ~~~~~~g~~~evg-----~s~~~l~~-~~~~il~D~G~~~~~~~-~~~p~~~---~~~~vDavllTHaHlDH~g~lp~l~ 70 (427)
T COG1236 1 MTLRFLGAAREVG-----RSCVLLET-GGTRILLDCGLFPGDPS-PERPLLP---PFPKVDAVLLTHAHLDHIGALPYLV 70 (427)
T ss_pred CceecccccCCcC-----cEEEEEEE-CCceEEEECCCCcCcCC-ccCCCCC---CCCCcCEEEeccCchhhhcccHHHH
Confidence 5688999888764 68999998 66899999998653332 1122211 1126999999999999999999997
Q ss_pred HHHHHhhcCCCCCCeEEEeCchHHHHHHHHHhcccccceeeecccccccccccccCCCCCcccCCCCCCCCCcccccccc
Q 002976 572 ALRRDLLKGVPHEPLLVVGPGPLKRYLDAYERLEDLDMQFLHCRYTREASWNDFEGNGEPVKNLSTPGSPFSTEGLINKT 651 (861)
Q Consensus 572 ~~~~~~~~g~~~~pl~I~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 651 (861)
.... + -.||+.+.+...++....-. .... .. ...| ++.........
T Consensus 71 ~~~~--------~-~~v~aT~~T~~l~~~~l~d~-~~~~-----~~-~~~~------------------~~~~~d~~~~~ 116 (427)
T COG1236 71 RNGF--------E-GPVYATPPTAALLKVLLGDS-LKLA-----EG-PDKP------------------PYSEEDVERVP 116 (427)
T ss_pred Hhcc--------C-CceeeccCHHHHHHHHHHHH-Hhhh-----cC-CCCC------------------CCchhHHHhhH
Confidence 6531 1 45888888877766543210 0000 00 0000 00000000000
Q ss_pred chhhhcccccccccccCCCCCCCCCcchhhhHhHHHHHHHcCCceeeEEeeccCCCCceEEEeccccccccCcccCCcEE
Q 002976 652 EANLFAKGSCMQSVWKGPGIPVDNNAAFPLLKNLKNVLNEAGLETLISFPVVHCPQAFGFALKAAERINSVGKVIPGWKI 731 (861)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lg~~~i~~~pv~H~~~a~G~~i~~~~~~~~~~~~~~G~ki 731 (861)
+ .-.++ .-+.+ .+++.++|+++++.|+.++.+|.++. .+.+|
T Consensus 117 ~-----~~~~~-----~yg~~-----------------~~v~~~~v~~~~AGHilGsa~~~le~-----------~~~~i 158 (427)
T COG1236 117 D-----LIRPL-----PYGEP-----------------VEVGGVKVTFYNAGHILGSAAILLEV-----------DGGRI 158 (427)
T ss_pred h-----hEEEe-----cCCCc-----------------eEeeeEEEEEecCCCccceeEEEEEe-----------CCceE
Confidence 0 00000 01122 13555899999999999999999997 56679
Q ss_pred EEeCCCCCCh-hHHhh---cCCCcEEEEeccCCCCh
Q 002976 732 VYSGDTRPCP-ELVEA---SRGATVLIHEATFEDGM 763 (861)
Q Consensus 732 ~YsGDT~p~~-~l~~~---~~~aDlLIhEaTf~d~~ 763 (861)
+||||..... .+... ...+|+||.|+||.+..
T Consensus 159 lytGD~~~~~~~l~~~a~~~~~~DvLI~EsTYg~~~ 194 (427)
T COG1236 159 LYTGDVKRRKDRLLNGAELPPCIDVLIVESTYGDRL 194 (427)
T ss_pred EEEeccCCCcCCCCCccccCCCCcEEEEecccCCcc
Confidence 9999998642 22222 22369999999999754
No 32
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.37 E-value=5.5e-12 Score=144.39 Aligned_cols=177 Identities=23% Similarity=0.307 Sum_probs=119.7
Q ss_pred CccEEEEEecCCCCCCCCCCccEEEEEEeCCceEEEeCCcchHHHHHHHhCccc-------hhhhhccccEEEEeccchh
Q 002976 490 DDLEIVLLGTGSSQPSKYRNVSSIYVNLFSKGSLLLDCGEGTLGQLKRRYGVEG-------ADSAVRKLRCIWISHIHAD 562 (861)
Q Consensus 490 ~~~~i~fLGTGsa~Ps~~Rn~Ss~ll~~~~~~~iLlDcGegt~~qL~r~~g~~~-------~~~~l~~i~~IfISH~H~D 562 (861)
.+++|..||.=.-+ +..++++++ ++..++||||--+-.. ...|.+. +.+...++++|||||.|.|
T Consensus 7 ~~i~i~~lGG~~Ei-----GkN~~vve~-~~~i~i~D~G~~fp~~--~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeD 78 (555)
T COG0595 7 AKIKIFALGGVGEI-----GKNMYVVEY-GDDIIILDAGLKFPED--DLLGVDLIIPDFSYLEENKDKVKGIFLTHGHED 78 (555)
T ss_pred CceEEEEecChhhh-----ccceEEEEE-CCcEEEEECccccCcc--ccccccEEecChHHhhhccccceEEEecCCchh
Confidence 57899999965533 245788888 7889999999654321 2244432 2334569999999999999
Q ss_pred hhccHHHHHHHHHHhhcCCCCCCeEEEeCchHHHHHHHHHhcccccceeeecccccccccccccCCCCCcccCCCCCCCC
Q 002976 563 HHAGLARILALRRDLLKGVPHEPLLVVGPGPLKRYLDAYERLEDLDMQFLHCRYTREASWNDFEGNGEPVKNLSTPGSPF 642 (861)
Q Consensus 563 H~~GL~~ll~~~~~~~~g~~~~pl~I~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 642 (861)
|++|+|.|+... ..++||+++-+...++.-..-.+... .+..+
T Consensus 79 HIGaip~ll~~~---------~~~piy~s~lt~~Li~~k~~~~~~~~-----------~~~~~----------------- 121 (555)
T COG0595 79 HIGALPYLLKQV---------LFAPIYASPLTAALIKEKLKEHGLFK-----------NENEL----------------- 121 (555)
T ss_pred hccchHHHHhcC---------CcCceecCHhhHHHHHHHHHHhcccc-----------ccCce-----------------
Confidence 999999997642 22789999988888776533110000 00000
Q ss_pred CccccccccchhhhcccccccccccCCCCCCCCCcchhhhHhHHHHHHHcCCceeeEEeeccCC-CCceEEEeccccccc
Q 002976 643 STEGLINKTEANLFAKGSCMQSVWKGPGIPVDNNAAFPLLKNLKNVLNEAGLETLISFPVVHCP-QAFGFALKAAERINS 721 (861)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lg~~~i~~~pv~H~~-~a~G~~i~~~~~~~~ 721 (861)
..+ .++.. .++|.+.|++++|.|+. +|+|+++..
T Consensus 122 --------------------~ev--~~~~~-----------------i~~~~~~v~f~~vtHSIPds~g~~i~T------ 156 (555)
T COG0595 122 --------------------HEV--KPGSE-----------------IKFGSFEVEFFPVTHSIPDSLGIVIKT------ 156 (555)
T ss_pred --------------------EEe--CCCCe-----------------EEeCcEEEEEEeecccCccceEEEEEC------
Confidence 000 11111 13577899999999987 599999997
Q ss_pred cCcccCCcEEEEeCCCCCC-----------hhHHhhcC-CCcEEEEeccCCC
Q 002976 722 VGKVIPGWKIVYSGDTRPC-----------PELVEASR-GATVLIHEATFED 761 (861)
Q Consensus 722 ~~~~~~G~ki~YsGDT~p~-----------~~l~~~~~-~aDlLIhEaTf~d 761 (861)
+-..|+|+||-+.. ..+.++++ |+++||.|+|-..
T Consensus 157 -----p~G~Iv~TGDFk~d~~~~~g~~~d~~r~~~~g~eGVl~LisdsTna~ 203 (555)
T COG0595 157 -----PEGNIVYTGDFKFDPTPVDGEPTDLARLAEIGKEGVLALISDSTNAE 203 (555)
T ss_pred -----CCccEEEeCCEEecCCcCCCCcCCHHHHHHhccCCcEEEEeCCcccC
Confidence 34479999998642 14566665 5999999999543
No 33
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.31 E-value=8.6e-12 Score=125.17 Aligned_cols=77 Identities=27% Similarity=0.404 Sum_probs=58.9
Q ss_pred CCCccEEEEEEeCCceEEEeCCcchHHHHHH---HhCccchhhhhccccEEEEeccchhhhccHHHHHHHHHHhhcCCCC
Q 002976 507 YRNVSSIYVNLFSKGSLLLDCGEGTLGQLKR---RYGVEGADSAVRKLRCIWISHIHADHHAGLARILALRRDLLKGVPH 583 (861)
Q Consensus 507 ~Rn~Ss~ll~~~~~~~iLlDcGegt~~qL~r---~~g~~~~~~~l~~i~~IfISH~H~DH~~GL~~ll~~~~~~~~g~~~ 583 (861)
.|+++|++|+. ++..+|||||.+...++.+ ..+ ..++++|||||.|.||+.|++.+...
T Consensus 3 ~~~~~~~li~~-~~~~iliD~g~~~~~~~~~~l~~~~-------~~~i~~i~iTH~H~DH~~g~~~~~~~---------- 64 (183)
T smart00849 3 GVGVNSYLVEG-DGGAILIDTGPGEAEDLLAELKKLG-------PKDIDAIILTHGHPDHIGGLPELLEA---------- 64 (183)
T ss_pred ccceeEEEEEe-CCceEEEeCCCChhHHHHHHHHHcC-------chhhcEEEecccCcchhccHHHHHhC----------
Confidence 46689999998 6889999999765434322 233 47899999999999999999888543
Q ss_pred CCeEEEeCchHHHHHHHH
Q 002976 584 EPLLVVGPGPLKRYLDAY 601 (861)
Q Consensus 584 ~pl~I~~p~~~~~~L~~~ 601 (861)
..+.||++....++++..
T Consensus 65 ~~~~i~~~~~~~~~~~~~ 82 (183)
T smart00849 65 PGAPVYAPEGTAELLKDL 82 (183)
T ss_pred CCCcEEEchhhhHHHhcc
Confidence 235688999888877654
No 34
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=99.31 E-value=4.1e-11 Score=129.40 Aligned_cols=250 Identities=19% Similarity=0.277 Sum_probs=147.9
Q ss_pred cEEEEEecCCCCCCCCCCccEEEEEEeC-CceEEEeCCcchHH--HHHHH--hCcc-----------------chhhhhc
Q 002976 492 LEIVLLGTGSSQPSKYRNVSSIYVNLFS-KGSLLLDCGEGTLG--QLKRR--YGVE-----------------GADSAVR 549 (861)
Q Consensus 492 ~~i~fLGTGsa~Ps~~Rn~Ss~ll~~~~-~~~iLlDcGegt~~--qL~r~--~g~~-----------------~~~~~l~ 549 (861)
++++.||++++. ...|.+++|++... +..+-+|+|....+ .+... ++.. .......
T Consensus 1 f~vi~LG~~GG~--~e~nls~~L~~~~~~~s~ialDagt~l~gi~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 78 (335)
T PF02112_consen 1 FQVIVLGSGGGP--DEGNLSAYLVRSIGSNSFIALDAGTLLSGINKLIQSKYFSTSFDITLPFWGFASSPYANAAYIIRN 78 (335)
T ss_pred CeEeecCCCCCC--CCCCcceeeeeecCcCceEEecCccHHHHHHHHhhhcccCCcccccCCccccccChHHHHHHHHHH
Confidence 368999999985 36789999998743 45788999976533 22211 1110 0112345
Q ss_pred cccEEEEeccchhhhccHHHHHHHHHHhhcCCCCCCeEEEeCchHHHHHHHHHhcccccceeeecccccccccccccCCC
Q 002976 550 KLRCIWISHIHADHHAGLARILALRRDLLKGVPHEPLLVVGPGPLKRYLDAYERLEDLDMQFLHCRYTREASWNDFEGNG 629 (861)
Q Consensus 550 ~i~~IfISH~H~DH~~GL~~ll~~~~~~~~g~~~~pl~I~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (861)
.|+.+||||.|.||+.||. +..-. .......+-.|||-+.+.+.|+... +.+..|+++...+
T Consensus 79 ~I~~ylItH~HLDHi~gLv--insp~--~~~~~~~~K~i~gl~~ti~alk~hi--------------FN~~iWPNl~~~~ 140 (335)
T PF02112_consen 79 HIKGYLITHPHLDHIAGLV--INSPE--DYLPNSSPKTIYGLPSTIEALKNHI--------------FNDIIWPNLSDEG 140 (335)
T ss_pred hhheEEecCCchhhHHHHH--hcCcc--cccccCCCCcEEECHHHHHHHHHcc--------------cCCccCCCCCCcC
Confidence 8999999999999999985 32211 0010025778999999999887652 1344677764222
Q ss_pred CCcccCCCCCCCCCccccccccchhhhcccccccccccCCCCCCCCCcchhhhHhHHHHHHHcCCceeeEEeeccCCC--
Q 002976 630 EPVKNLSTPGSPFSTEGLINKTEANLFAKGSCMQSVWKGPGIPVDNNAAFPLLKNLKNVLNEAGLETLISFPVVHCPQ-- 707 (861)
Q Consensus 630 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lg~~~i~~~pv~H~~~-- 707 (861)
.... +... ....+... ... . ....... .... ..-....++++|+.|...
T Consensus 141 ~~~~--------~~~~-~~~~l~~~-----~~~-~---~~~~~~s------~~~~-----~~~~~~~v~~~~l~H~~~~~ 191 (335)
T PF02112_consen 141 EGDY--------LYKY-RYFDLSPG-----ELI-P---LNNTTLS------VIPN-----EFPNSSSVTPFPLSHGNSVS 191 (335)
T ss_pred cccc--------eeee-eeeecccc-----cee-e---ccccccc------cccc-----cccccccceeeecCCCCccc
Confidence 1000 0000 00000000 000 0 0000000 0000 001125688899999864
Q ss_pred ----CceEEEeccccccccCcccCCcEEEEeCCCCCC--------hhHHhhc------CCCcEEEEeccCCCChHHHHHh
Q 002976 708 ----AFGFALKAAERINSVGKVIPGWKIVYSGDTRPC--------PELVEAS------RGATVLIHEATFEDGMMEEAIA 769 (861)
Q Consensus 708 ----a~G~~i~~~~~~~~~~~~~~G~ki~YsGDT~p~--------~~l~~~~------~~aDlLIhEaTf~d~~~~~a~~ 769 (861)
+.+|.|+.. ..|..|+|.|||.+. ..+++.+ +...-+++||.|.++..+ +.-
T Consensus 192 ~~~~SsAfli~~~---------~t~~~il~fGD~e~Ds~s~~~~~~~iW~~~ap~I~~~~LkaI~IEcS~~~~~~d-~~L 261 (335)
T PF02112_consen 192 SPVYSSAFLIRDN---------ITGDEILFFGDTEPDSVSKSPRNQKIWRYAAPKIASGKLKAIFIECSYPNSQPD-SQL 261 (335)
T ss_pred CCCcceEEEEEeC---------CCCCEEEEEeCCCCCccccCchHHHHHHHHHhhccccccCEEEEEeCCCCCCCc-hHh
Confidence 689999873 257899999999983 3344443 356789999999987654 678
Q ss_pred cCCCCHHHHHHHHHH----cCC-------CEEEEeeccCCCC
Q 002976 770 KNHSTTKEAIDVGSS----AGV-------YRIILTHFSQRYP 800 (861)
Q Consensus 770 ~~HsT~~eA~~va~~----~~a-------k~lvLtHfS~Ry~ 800 (861)
.||+|+...++..+. .+- =++|+||.-+...
T Consensus 262 yGHLtP~~Li~EL~~L~~~~~~~~~~L~gL~VIItHIK~~~~ 303 (335)
T PF02112_consen 262 YGHLTPKHLIEELKVLASKVGQTSPPLKGLNVIITHIKPSLN 303 (335)
T ss_pred hccCCHHHHHHHHHHHHhccccccCCCCCCeEEEEEeCCccc
Confidence 999999865544433 211 1699999987654
No 35
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=99.27 E-value=3.5e-11 Score=130.45 Aligned_cols=258 Identities=21% Similarity=0.236 Sum_probs=144.9
Q ss_pred CccEEEEEecCCCCCCCCCCccEEEEEEeCCceEEEeCCcchHHH---HHHHhCccchhhhhccccEEEEeccchhhhcc
Q 002976 490 DDLEIVLLGTGSSQPSKYRNVSSIYVNLFSKGSLLLDCGEGTLGQ---LKRRYGVEGADSAVRKLRCIWISHIHADHHAG 566 (861)
Q Consensus 490 ~~~~i~fLGTGsa~Ps~~Rn~Ss~ll~~~~~~~iLlDcGegt~~q---L~r~~g~~~~~~~l~~i~~IfISH~H~DH~~G 566 (861)
.-++|++||+-.-+. .||+||++ ....+|+|||-...+- ..-.+...+.. +..||||+|||+|.||++=
T Consensus 179 ~wvRvt~LGg~~EVG-----RSa~lv~T-~eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~--~~~lDAViiTHAHLDH~G~ 250 (637)
T COG1782 179 RWVRVTALGGFREVG-----RSALLVST-PESRVLLDCGVNVAGNGEDAFPYLDVPEFQ--PDELDAVIITHAHLDHCGF 250 (637)
T ss_pred ceEEEEeeccchhcc-----ceeEEEec-CCceEEEeccccCCCCccccCccccccccc--ccccceEEEeecccccccc
Confidence 458999999766553 58999998 7889999999776431 11112222221 2379999999999999988
Q ss_pred HHHHHHHHHHhhcCCCCCCeEEEeCchHHHHHHHHHhcccccceeeecccccccccccccCCCCCcccCCCCCCCCCccc
Q 002976 567 LARILALRRDLLKGVPHEPLLVVGPGPLKRYLDAYERLEDLDMQFLHCRYTREASWNDFEGNGEPVKNLSTPGSPFSTEG 646 (861)
Q Consensus 567 L~~ll~~~~~~~~g~~~~pl~I~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 646 (861)
||.|... | ... +|||.+.+++.+--... +|++.... .|. ..||+.+.
T Consensus 251 lP~LfkY------g-y~G--PVY~T~PTRDlm~LLq~------Dyi~va~k---------eg~---------~ppY~~k~ 297 (637)
T COG1782 251 LPLLFKY------G-YDG--PVYCTPPTRDLMVLLQL------DYIEVAEK---------EGG---------EPPYESKD 297 (637)
T ss_pred hhhhhhc------C-CCC--CeeeCCCcHHHHHHHHH------HHHHHHHh---------cCC---------CCCCCHHH
Confidence 8877543 3 233 47887777655432211 11111100 000 01222111
Q ss_pred cccccchhhhcccccccccccCCCCCCCCCcchhhhHhHHHHHHHcCCceeeEEeeccCCCCceEEEeccccccccCccc
Q 002976 647 LINKTEANLFAKGSCMQSVWKGPGIPVDNNAAFPLLKNLKNVLNEAGLETLISFPVVHCPQAFGFALKAAERINSVGKVI 726 (861)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lg~~~i~~~pv~H~~~a~G~~i~~~~~~~~~~~~~ 726 (861)
....+.+.+ ..+| +. + ..--..+++++.-+.|..++...-+.-. .
T Consensus 298 v~~~lkhtI-tldY---------ge-v---------------TDIaPDirLTf~NAGHILGSA~~HlHIG-------d-- 342 (637)
T COG1782 298 VRKVLKHTI-TLDY---------GE-V---------------TDIAPDIRLTFYNAGHILGSAMAHLHIG-------D-- 342 (637)
T ss_pred HHHHHheee-eecc---------Cc-c---------------cccCCccEEEEecccchhcceeeEEEec-------C--
Confidence 111111100 0000 00 0 0001346789999999987665555431 1
Q ss_pred CCcEEEEeCCCCCCh-hHH----hhcCCCcEEEEeccCC--CChH---HHHHhcCCCCHHHHHHHHHH---cCCCEEEEe
Q 002976 727 PGWKIVYSGDTRPCP-ELV----EASRGATVLIHEATFE--DGMM---EEAIAKNHSTTKEAIDVGSS---AGVYRIILT 793 (861)
Q Consensus 727 ~G~ki~YsGDT~p~~-~l~----~~~~~aDlLIhEaTf~--d~~~---~~a~~~~HsT~~eA~~va~~---~~ak~lvLt 793 (861)
+...|+||||..+.. .+. .-...++-||.|+||. ++.+ ++|. .+.+++..+ -|-|.||..
T Consensus 343 GlyNi~yTGDfk~~~trLl~~A~n~FpRvEtlimEsTYGg~~d~q~~R~eaE-------~~L~~vi~~t~~rGGKvLIP~ 415 (637)
T COG1782 343 GLYNIVYTGDFKFEKTRLLEPANNKFPRVETLIMESTYGGRDDVQPPREEAE-------KELIKVINDTLKRGGKVLIPV 415 (637)
T ss_pred CceeEEEecccccceeeecChhhccCcchhheeeeeccCCccccCccHHHHH-------HHHHHHHHHHHhcCCeEEEEe
Confidence 456899999998753 232 2335789999999998 3321 1221 233444443 354566655
Q ss_pred eccCCCCCC-cccccc----cCCceEEeeeCcEEecCCCCCC
Q 002976 794 HFSQRYPKI-PVVDET----HMHKTCIAFDLMSINLADLPIL 830 (861)
Q Consensus 794 HfS~Ry~~~-~~~~~~----~~~~v~~A~D~m~i~l~~~~~~ 830 (861)
----|-+.. -++++. .-+++-+--|||..+-..+..+
T Consensus 416 fAVGR~QEvM~VLee~mr~g~ipe~PVYlDGMI~EatAIhta 457 (637)
T COG1782 416 FAVGRSQEVMIVLEEAMRKGLIPEVPVYLDGMIWEATAIHTA 457 (637)
T ss_pred eeccccceehhHHHHHHhcCCCCCCceeeeeeeeehhhhhhc
Confidence 544665543 123332 3456888999999988766543
No 36
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.25 E-value=4.6e-11 Score=125.86 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=96.7
Q ss_pred CCCCcEEEEEeCCcEEEEEcChhHHHHHHHcCCCcCCCCEEEECcCCcCccCcHHHHHHHHhccCCCCCcEEEEcCccHH
Q 002976 56 QDTSPSVLLFFDNQRFIFNAGEGLQRFCTEHKIKLSKVDHIFLSRVCSETAGGLPGLLLTLAGIGDEGLSVNVWGPSDLK 135 (861)
Q Consensus 56 ~~~~~slll~~~~~~yLfD~GeGtqr~l~~~~i~~~ki~~IFiTH~H~DHi~GLpgll~t~~~~~~~~~~l~IyGP~gl~ 135 (861)
.|..+|++|..++..+|||||.+... ..+...++++|||||.|+||++||+.+... .+ .++.||||+++.
T Consensus 24 ~r~~~s~~i~~~~~~iliD~G~~~~~----~~~~~~~id~i~iTH~H~DHi~gl~~l~~~---~~---~~~~v~~~~~~~ 93 (238)
T TIGR03307 24 RRQPCSAVIEFNGARTLIDAGLTDLA----ERFPPGSLQAILLTHYHMDHVQGLFPLRWG---VG---EPIPVYGPPDEE 93 (238)
T ss_pred cCcceEEEEEECCcEEEEECCChhHh----hccCccCCCEEEEecCchhhhcchHHHHHh---cC---CceeEEeCchHh
Confidence 36778999999999999999976432 335667899999999999999999776421 11 258899999865
Q ss_pred HHHHHHHhhcccCceeeeeecCCCCCCCCcCCCCccCCCceeEeeCCcEEEEEEEcCCCCCCCCCCCCCCCeeEEEEEeC
Q 002976 136 YLVDAMKSFIPHAAMVHTHCFGPAPSSDASLPDSAKSANHIILVDNELAKISAILLKPSCSDGSPVKPGETSVIYVCELP 215 (861)
Q Consensus 136 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~V~~~~l~h~~~~~~~~~~~~~s~gY~~~~~ 215 (861)
.... .... ..+ ..+.. ....+..+..++++|+++++.|.. +++||+|+.+
T Consensus 94 ~~~~-~~~~---~~~---~~~~~-------------~~~~~~~~~~~~~~i~~~~~~H~~----------~~~g~~i~~~ 143 (238)
T TIGR03307 94 GCDD-LFKH---PGI---LDFSK-------------PLEAFEPFDLGGLRVTPLPLVHSK----------LTFGYLLETD 143 (238)
T ss_pred hHHH-HhcC---ccc---ccccc-------------cccCCceEEECCEEEEEEecCCCC----------cceEEEEecC
Confidence 3221 1110 000 00000 012233455678999999999964 6899999977
Q ss_pred CccCCCCHHHHHHcCCCCChhhhhhcC-CCcEEeCCC
Q 002976 216 EITGKFDPKKAVALGLKPGPKYRELQS-GKSVKSDTL 251 (861)
Q Consensus 216 ~~~gkf~~~ka~~lGv~~g~~~~~L~~-G~~V~l~dg 251 (861)
+++--|-.|- +..+......+++ +.++.+-+.
T Consensus 144 ~~~i~y~gDt----~~~~~~~~~~~~~~~~D~li~e~ 176 (238)
T TIGR03307 144 GQRVAYLTDT----AGLPPDTEAFLKNHPLDVLILDC 176 (238)
T ss_pred CcEEEEEecC----CCCCHHHHHHHhcCCCCEEEEeC
Confidence 6654444442 2222233333432 566666555
No 37
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=99.24 E-value=6.8e-11 Score=116.94 Aligned_cols=82 Identities=20% Similarity=0.188 Sum_probs=57.1
Q ss_pred cCCceeeEEeeccC-------CCCceEEEeccccccccCcccCCcEEEEeCCCCCC--hhHHhhcCCCcEEEEeccCCCC
Q 002976 692 AGLETLISFPVVHC-------PQAFGFALKAAERINSVGKVIPGWKIVYSGDTRPC--PELVEASRGATVLIHEATFEDG 762 (861)
Q Consensus 692 lg~~~i~~~pv~H~-------~~a~G~~i~~~~~~~~~~~~~~G~ki~YsGDT~p~--~~l~~~~~~aDlLIhEaTf~d~ 762 (861)
+|.++|+.+++.|. ....||+++. +|.+|++.|||... .........+|+|+.-+.
T Consensus 73 ~~~~~i~~v~~~~~~~~~~~~~~~~~~~i~~-----------~g~~i~~~Gd~~~~~~~~~~~~~~~vDvl~~p~~---- 137 (163)
T PF13483_consen 73 FGGFKITAVPAYHDGPGGHPRGENVGYLIEV-----------GGVTIYHAGDTGFPPDDEQLKQLGKVDVLFLPVG---- 137 (163)
T ss_dssp CTTEEEEEEEEEE-STGTS-TTCCEEEEEEE-----------TTEEEEE-TT--S---HHHHHHH-S-SEEEEE------
T ss_pred EeeeEEEEEeeeccccCCCCcCCeEEEEEEe-----------CCCEEEEECCCccCCCHHHHhcccCCCEEEecCC----
Confidence 45567888888874 3478999997 78999999999974 334455568999999886
Q ss_pred hHHHHHhcCCCCHHHHHHHHHHcCCCEEEEee
Q 002976 763 MMEEAIAKNHSTTKEAIDVGSSAGVYRIILTH 794 (861)
Q Consensus 763 ~~~~a~~~~HsT~~eA~~va~~~~ak~lvLtH 794 (861)
....+...+|+++++++++|.+|.+|
T Consensus 138 ------g~~~~~~~~a~~~~~~l~pk~viP~H 163 (163)
T PF13483_consen 138 ------GPFTMGPEEAAELAERLKPKLVIPMH 163 (163)
T ss_dssp ------TTTS--HHHHHHHHHHCT-SEEEEES
T ss_pred ------CCcccCHHHHHHHHHHcCCCEEEeCC
Confidence 35578899999999999999999998
No 38
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=99.18 E-value=4.7e-11 Score=122.85 Aligned_cols=192 Identities=22% Similarity=0.353 Sum_probs=114.0
Q ss_pred ccEEEEEecCCCCCCCCCCccEEEEEEeCCceEEEeCCcchHHHHHHHhCc----cchhhhhccccEEEEeccchhhhcc
Q 002976 491 DLEIVLLGTGSSQPSKYRNVSSIYVNLFSKGSLLLDCGEGTLGQLKRRYGV----EGADSAVRKLRCIWISHIHADHHAG 566 (861)
Q Consensus 491 ~~~i~fLGTGsa~Ps~~Rn~Ss~ll~~~~~~~iLlDcGegt~~qL~r~~g~----~~~~~~l~~i~~IfISH~H~DH~~G 566 (861)
+++++.||.|--+. .||++|.+ ++.+|+||||.-.--+=.|+|.. ......-.-|++|+|||+|.||++.
T Consensus 3 ~i~v~pLGAGQdvG-----rSCilvsi-~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGa 76 (501)
T KOG1136|consen 3 EIKVTPLGAGQDVG-----RSCILVSI-GGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGA 76 (501)
T ss_pred cceEEeccCCcccC-----ceEEEEEE-CCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeeccccccc
Confidence 57899999998653 58999998 88999999997542222222321 0111223569999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCeEEEeCchH--HHHHHHHHhcccc---cceeeecccccccccccccCCCCCcccCCCCCCC
Q 002976 567 LARILALRRDLLKGVPHEPLLVVGPGPL--KRYLDAYERLEDL---DMQFLHCRYTREASWNDFEGNGEPVKNLSTPGSP 641 (861)
Q Consensus 567 L~~ll~~~~~~~~g~~~~pl~I~~p~~~--~~~L~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 641 (861)
||.+-... | .+.|++.--|... --.|+.|..+... +-+|.
T Consensus 77 LPyfsEv~-----G-Y~GPIYMt~PTkaicPvlLeDyRkv~vd~kGe~n~F----------------------------- 121 (501)
T KOG1136|consen 77 LPYFSEVV-----G-YDGPIYMTYPTKAICPVLLEDYRKVAVDRKGESNFF----------------------------- 121 (501)
T ss_pred ccchHhhh-----C-CCCceEEecchhhhchHHHHHHHHHhccccCcccce-----------------------------
Confidence 99886553 3 3467766655432 2234555443110 00000
Q ss_pred CCccccccccchhhhcccccccccccCCCCCCCCCcchhhhHhHHHHHHHcCCceeeEEeeccCCCCceEEEeccccccc
Q 002976 642 FSTEGLINKTEANLFAKGSCMQSVWKGPGIPVDNNAAFPLLKNLKNVLNEAGLETLISFPVVHCPQAFGFALKAAERINS 721 (861)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lg~~~i~~~pv~H~~~a~G~~i~~~~~~~~ 721 (861)
..+. ...+ ..+.+ ... +.+.++-.....|++.-+.|..++.-+-+..
T Consensus 122 -T~q~-I~nC------MKKVv-------~i~------------l~qt~~vD~dl~IrayYAGHVLGAaMf~ikv------ 168 (501)
T KOG1136|consen 122 -TTQD-IKNC------MKKVV-------AID------------LHQTIQVDEDLQIRAYYAGHVLGAAMFYIKV------ 168 (501)
T ss_pred -eHHH-HHHH------Hhhee-------Eee------------ehheEEecccceeeeeecccccceeEEEEEe------
Confidence 0000 0000 00000 000 1111112234679999999999888877764
Q ss_pred cCcccCCcEEEEeCCCCCChh--HH-hhc--CCCcEEEEeccCCC
Q 002976 722 VGKVIPGWKIVYSGDTRPCPE--LV-EAS--RGATVLIHEATFED 761 (861)
Q Consensus 722 ~~~~~~G~ki~YsGDT~p~~~--l~-~~~--~~aDlLIhEaTf~d 761 (861)
...+++|+||-...++ +- ..+ -..||||.|+||..
T Consensus 169 -----Gd~svvYTGDYnmTpDrHLGaA~id~~rpdlLIsESTYat 208 (501)
T KOG1136|consen 169 -----GDQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLISESTYAT 208 (501)
T ss_pred -----cceeEEEecCccCCcccccchhhhccccCceEEeecccee
Confidence 4569999999876543 21 111 25799999999974
No 39
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=99.16 E-value=3.7e-11 Score=136.52 Aligned_cols=114 Identities=23% Similarity=0.278 Sum_probs=87.1
Q ss_pred HHHhhhhccC--CC---CCeeEEEEEeeCCCC---CCCCcEEEEEeCCcE-EEEEcChhHHHHHHH-cCC-----CcCCC
Q 002976 29 KLQLKVRKLN--PI---NTLSYVQILGTGMDT---QDTSPSVLLFFDNQR-FIFNAGEGLQRFCTE-HKI-----KLSKV 93 (861)
Q Consensus 29 ~~~~~~~~~~--~~---~~~~~l~~LGtgs~~---~~~~~slll~~~~~~-yLfD~GeGtqr~l~~-~~i-----~~~ki 93 (861)
++++.+.... |- +..+.|.+|||||.. .|+-+|++++.+... +|.||||||.-++.+ +|+ -+.++
T Consensus 423 ~i~k~~~~~~~~P~~~e~~~~eIi~LGTGSaiPskyRNVSS~lv~i~~~~~IlLDCGEgTlgql~R~YG~~~~~~~lr~L 502 (746)
T KOG2121|consen 423 KIQKYHLSGDHFPNFAEKKDPEIIFLGTGSAIPSKYRNVSSILVRIDSDDSILLDCGEGTLGQLVRHYGVENVDTALRKL 502 (746)
T ss_pred hhhhhhccCCCCCCccccCCcEEEEecCCccCCCcccceEEEEEeccCCccEEeecCCchHHHHHHHhhhcchHHHHHhH
Confidence 3555555554 21 335899999999843 378899999998776 999999999876544 552 23478
Q ss_pred CEEEECcCCcCccCcHHHHHHHHhccC--CCCCcEEEEcCccHHHHHHHHH
Q 002976 94 DHIFLSRVCSETAGGLPGLLLTLAGIG--DEGLSVNVWGPSDLKYLVDAMK 142 (861)
Q Consensus 94 ~~IFiTH~H~DHi~GLpgll~t~~~~~--~~~~~l~IyGP~gl~~~l~~~~ 142 (861)
.+|||||+|.||..||+++|....-.. ....++.|.||..+..+++.+.
T Consensus 503 raI~ISHlHADHh~Gl~~vL~~r~k~~k~~~~~pl~vv~P~ql~~wl~~y~ 553 (746)
T KOG2121|consen 503 RAIFISHLHADHHLGLISVLQARTKLLKGVENSPLLVVAPRQLKKWLQEYH 553 (746)
T ss_pred HHHHHHhhcccccccHHHHHHHHHHhccccccCceEEeChHHHHHHHHHHh
Confidence 999999999999999999998654332 2445899999999998888754
No 40
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=99.05 E-value=4.8e-09 Score=111.86 Aligned_cols=195 Identities=19% Similarity=0.217 Sum_probs=123.3
Q ss_pred CCccEEEEEecCCCCCCCCCCccEEEEEEeCCceEEEeCCcchHHHHHHHhCccchhhhhccccEEEEeccchhhhccHH
Q 002976 489 RDDLEIVLLGTGSSQPSKYRNVSSIYVNLFSKGSLLLDCGEGTLGQLKRRYGVEGADSAVRKLRCIWISHIHADHHAGLA 568 (861)
Q Consensus 489 ~~~~~i~fLGTGsa~Ps~~Rn~Ss~ll~~~~~~~iLlDcGegt~~qL~r~~g~~~~~~~l~~i~~IfISH~H~DH~~GL~ 568 (861)
..+|+|+.|| +||++|+. ++.+||+|..-+.-..-.. +..-.....+..+++|+|||.|.|| ++..
T Consensus 4 ~~~m~itwlG-----------ha~~lie~-~~~~iliDP~~~~~~~~~~-~~~~~~~~~~~~~D~ilitH~H~DH-l~~~ 69 (258)
T COG2220 4 AEDMKITWLG-----------HAAFLIET-GGKRILIDPVLSGAPSPSN-FPGGLFEDLLPPIDYILITHDHYDH-LDDE 69 (258)
T ss_pred CcCceEEEec-----------ceEEEEEE-CCEEEEECcccCCCCCccc-ccCcCChhhcCCCCEEEEeCCCccc-cCHH
Confidence 3579999999 79999998 7789999986543111000 0000112345789999999999999 5566
Q ss_pred HHHHHHHHhhcCCCCCCeEEEeCchHHHHHHHHHhcccccceeeecccccccccccccCCCCCcccCCCCCCCCCccccc
Q 002976 569 RILALRRDLLKGVPHEPLLVVGPGPLKRYLDAYERLEDLDMQFLHCRYTREASWNDFEGNGEPVKNLSTPGSPFSTEGLI 648 (861)
Q Consensus 569 ~ll~~~~~~~~g~~~~pl~I~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 648 (861)
.++..+. .+...++.|......+..+.. ... ... .. .|
T Consensus 70 ~~~~~~~-------~~~~~~~~p~~~~~~~~~~g~-~~~--~~~---~~---~~-------------------------- 107 (258)
T COG2220 70 TLIALRT-------NKAPVVVVPLGAGDLLIRDGV-EAE--RVH---EL---GW-------------------------- 107 (258)
T ss_pred HHHHHhc-------CCCcEEEeHHHHHHHHHhcCC-Ccc--eEE---ee---cC--------------------------
Confidence 6654431 234567778777544433321 000 000 00 00
Q ss_pred cccchhhhcccccccccccCCCCCCCCCcchhhhHhHHHHHHHcCCceeeEEeeccCC-------------CCceEEEec
Q 002976 649 NKTEANLFAKGSCMQSVWKGPGIPVDNNAAFPLLKNLKNVLNEAGLETLISFPVVHCP-------------QAFGFALKA 715 (861)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lg~~~i~~~pv~H~~-------------~a~G~~i~~ 715 (861)
+.. .+++..+++++++.|.. ...||+++.
T Consensus 108 ---------------------~~~-----------------~~~~~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi~~ 149 (258)
T COG2220 108 ---------------------GDV-----------------IELGDLEITAVPAYHVSARHLPGRGIRPTGLWVGYVIET 149 (258)
T ss_pred ---------------------Cce-----------------EEecCcEEEEEEeecccccccCCCCccccCCceEEEEEe
Confidence 000 01233344444444432 256899987
Q ss_pred cccccccCcccCCcEEEEeCCCCCChhHHhhcC--CCcEEEEeccCCCChHHHHHhcCCCCHHHHHHHHHHcCCCEEEEe
Q 002976 716 AERINSVGKVIPGWKIVYSGDTRPCPELVEASR--GATVLIHEATFEDGMMEEAIAKNHSTTKEAIDVGSSAGVYRIILT 793 (861)
Q Consensus 716 ~~~~~~~~~~~~G~ki~YsGDT~p~~~l~~~~~--~aDlLIhEaTf~d~~~~~a~~~~HsT~~eA~~va~~~~ak~lvLt 793 (861)
.|.+++++|||.+ ..+....+ .+|+++.+.--.+ ...|++..++.++++.++++.+|.+
T Consensus 150 -----------~g~~iyh~GDt~~-~~~~~~~~~~~~DvallPig~~~-------~~~~~~~~~~~~~~~~l~~~~viP~ 210 (258)
T COG2220 150 -----------PGGRVYHAGDTGY-LFLIIEELDGPVDVALLPIGGYP-------NATMMPPEAAVAAAEVLRPKRVIPM 210 (258)
T ss_pred -----------CCceEEeccCccH-HHHhhhhhcCCccEEEeccCCCC-------CCccCCHHHHHHHHHHhcCCeEEee
Confidence 7789999999999 33333333 2799999887332 4679999999999999999999999
Q ss_pred ecc
Q 002976 794 HFS 796 (861)
Q Consensus 794 HfS 796 (861)
|+.
T Consensus 211 Hy~ 213 (258)
T COG2220 211 HYG 213 (258)
T ss_pred ccc
Confidence 998
No 41
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=98.96 E-value=4.1e-10 Score=123.22 Aligned_cols=192 Identities=23% Similarity=0.341 Sum_probs=116.6
Q ss_pred CCccEEEEEecCCCCCCCCCCccEEEEEEeCCceEEEeCCcchH-HHHHH--HhCccchhhhhccccEEEEeccchhhhc
Q 002976 489 RDDLEIVLLGTGSSQPSKYRNVSSIYVNLFSKGSLLLDCGEGTL-GQLKR--RYGVEGADSAVRKLRCIWISHIHADHHA 565 (861)
Q Consensus 489 ~~~~~i~fLGTGsa~Ps~~Rn~Ss~ll~~~~~~~iLlDcGegt~-~qL~r--~~g~~~~~~~l~~i~~IfISH~H~DH~~ 565 (861)
.+.++++.||.|.-+. .||.++++ .+..||+|||--.. ..+.. .|. .-.+..++.++|||+|+||..
T Consensus 11 ~d~l~~~pLGag~EVG-----RSC~ile~-kGk~iMld~gvhpaysg~aslpf~d----~vd~s~id~llIthFhldh~a 80 (668)
T KOG1137|consen 11 SDQLKFTPLGAGNEVG-----RSCHILEY-KGKTIMLDCGVHPAYSGMASLPFYD----EVDLSAIDPLLITHFHLDHAA 80 (668)
T ss_pred CCcEEEEECCCCcccC-----ceEEEEEe-cCeEEEeccccCccccccccccchh----hcccccccHHHHhhhhhhhcc
Confidence 4568999999999764 58999999 88999999995321 11110 111 124689999999999999999
Q ss_pred cHHHHHHHHHHhhcCCCCCCeEEEeCchHHHHHH-HHHhcccccceeeecccccccccccccCCCCCcccCCCCCCCCCc
Q 002976 566 GLARILALRRDLLKGVPHEPLLVVGPGPLKRYLD-AYERLEDLDMQFLHCRYTREASWNDFEGNGEPVKNLSTPGSPFST 644 (861)
Q Consensus 566 GL~~ll~~~~~~~~g~~~~pl~I~~p~~~~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 644 (861)
-||++++...+ .| +..--...+++..||- .|..+.+.+.+ ..+.
T Consensus 81 slp~~~qkTsf--~g---rvfmth~TkAi~kwllsdyvrvs~~s~~------------~~Ly------------------ 125 (668)
T KOG1137|consen 81 SLPFTLQKTSF--IG---RVFMTHPTKAIYKWLLSDYVRVSNRSGD------------DRLY------------------ 125 (668)
T ss_pred cccceeeeccc--cc---eeEEecchHHHHHhhhhcceEeeeccCc------------cccc------------------
Confidence 99999876431 12 2233333455566653 23222211100 0000
Q ss_pred cccccccchhhhcccccccccccCCCCCCCCCcchhhhHhHHHHHHHcCCceeeEEeeccCCCCceEEEeccccccccCc
Q 002976 645 EGLINKTEANLFAKGSCMQSVWKGPGIPVDNNAAFPLLKNLKNVLNEAGLETLISFPVVHCPQAFGFALKAAERINSVGK 724 (861)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lg~~~i~~~pv~H~~~a~G~~i~~~~~~~~~~~ 724 (861)
..++.+.++.+..-..+.+ ..+..++++.++-+.|..++.-|.++-
T Consensus 126 ------------~e~dl~~s~dKie~idfhe-------------~~ev~gIkf~p~~aGhVlgacMf~vei--------- 171 (668)
T KOG1137|consen 126 ------------TEGDLMESMDKIETIDFHE-------------TVEVNGIKFWPYHAGHVLGACMFMVEI--------- 171 (668)
T ss_pred ------------cchhHHHhhhhheeeeecc-------------ccccCCeEEEeeccchhhhheeeeeee---------
Confidence 0000000000000000000 013456788888899999999999986
Q ss_pred ccCCcEEEEeCCCCCChh--HHhh---cCCCcEEEEeccCCC
Q 002976 725 VIPGWKIVYSGDTRPCPE--LVEA---SRGATVLIHEATFED 761 (861)
Q Consensus 725 ~~~G~ki~YsGDT~p~~~--l~~~---~~~aDlLIhEaTf~d 761 (861)
.|.+|.|+||-.+.++ +..+ -.+.|+||.|.||.-
T Consensus 172 --agv~lLyTGd~sreeDrhl~aae~P~~~~dvli~estygv 211 (668)
T KOG1137|consen 172 --AGVRLLYTGDYSREEDRHLIAAEMPPTGPDVLITESTYGV 211 (668)
T ss_pred --ceEEEEeccccchhhcccccchhCCCCCccEEEEEeeeeE
Confidence 7899999999986533 2222 137899999999874
No 42
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=98.88 E-value=2e-08 Score=114.85 Aligned_cols=135 Identities=19% Similarity=0.162 Sum_probs=88.7
Q ss_pred EEEEEeeCCCCCCCCcEEEEEeCCcEEEEEcChhHHH--------------HHHHcCCCcCCCCEEEECcCCcCccCcHH
Q 002976 45 YVQILGTGMDTQDTSPSVLLFFDNQRFIFNAGEGLQR--------------FCTEHKIKLSKVDHIFLSRVCSETAGGLP 110 (861)
Q Consensus 45 ~l~~LGtgs~~~~~~~slll~~~~~~yLfD~GeGtqr--------------~l~~~~i~~~ki~~IFiTH~H~DHi~GLp 110 (861)
++.+||-.. ...++|++|..++..+|||||.++.. .+.+ ...++++|||||.|.||++||+
T Consensus 2 ~i~~lGG~~--eiG~n~~ll~~~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~---~~~~i~~I~iTH~H~DHiggl~ 76 (422)
T TIGR00649 2 KIFALGGLG--EIGKNMYVVEIDDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQE---NQDKVKGIFITHGHEDHIGAVP 76 (422)
T ss_pred EEEEccCCC--ccCCeEEEEEECCeEEEEeCCCCCCcccccCCccccCCHHHHHh---ccccCCEEEECCCChHHhCcHH
Confidence 466777321 22467999999999999999987532 1221 2357999999999999999999
Q ss_pred HHHHHHhccCCCCCcEEEEcCccHHHHHHHHHhhcccCceeeeeecCCCCCCCCcCCCCccCCCceeEeeCC-cEEEEEE
Q 002976 111 GLLLTLAGIGDEGLSVNVWGPSDLKYLVDAMKSFIPHAAMVHTHCFGPAPSSDASLPDSAKSANHIILVDNE-LAKISAI 189 (861)
Q Consensus 111 gll~t~~~~~~~~~~l~IyGP~gl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~i~V~~~ 189 (861)
.++..+. .+.||+|+.+...+.....-.......... ....+..++.+ +++|+++
T Consensus 77 ~l~~~~~-------~~~Vy~~~~t~~~l~~~~~~~~~~~~~~~~-----------------~~~~~~~~~ig~~~~v~~~ 132 (422)
T TIGR00649 77 YLFHTVG-------FPPIYGTPLTIALIKSKIKENKLNVRTDLL-----------------EIHEGEPIETGENHTIEFI 132 (422)
T ss_pred HHHHhCC-------CCeEEeCHHHHHHHHHHHHhcCCCCCCceE-----------------EeCCCCEEEeCCceEEEEE
Confidence 9875321 245999999887776533210000000000 01223355653 5999999
Q ss_pred EcCCCCCCCCCCCCCCCeeEEEEEeCCc
Q 002976 190 LLKPSCSDGSPVKPGETSVIYVCELPEI 217 (861)
Q Consensus 190 ~l~h~~~~~~~~~~~~~s~gY~~~~~~~ 217 (861)
++.|.. ..|+||+++.++.
T Consensus 133 ~~~H~~---------p~s~g~~i~~~~~ 151 (422)
T TIGR00649 133 RITHSI---------PDSVGFALHTPLG 151 (422)
T ss_pred ECCCCC---------cceEEEEEEeCCc
Confidence 999963 3589999987653
No 43
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=98.86 E-value=9.2e-09 Score=103.33 Aligned_cols=62 Identities=19% Similarity=0.297 Sum_probs=47.6
Q ss_pred CccEEEEEEeCCceEEEeCCcchHHHHHHHhCccchhhhhccccEEEEeccchhhhccHHHHHHH
Q 002976 509 NVSSIYVNLFSKGSLLLDCGEGTLGQLKRRYGVEGADSAVRKLRCIWISHIHADHHAGLARILAL 573 (861)
Q Consensus 509 n~Ss~ll~~~~~~~iLlDcGegt~~qL~r~~g~~~~~~~l~~i~~IfISH~H~DH~~GL~~ll~~ 573 (861)
+++|++|+. ++..+|||||.+........ .........+|++|++||.|.||++|+..+...
T Consensus 5 ~~n~~li~~-~~~~iliD~G~~~~~~~~~~--~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~ 66 (194)
T PF00753_consen 5 GSNSYLIEG-GDGAILIDTGLDPDFAKELE--LALLGISGEDIDAVILTHAHPDHIGGLPELLEA 66 (194)
T ss_dssp EEEEEEEEE-TTEEEEESEBSSHHHHHHHH--HHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEeCCCCchhhHHhh--hhHhhccCCCeEEEEECcccccccccccccccc
Confidence 468999987 88999999999875444321 001123468999999999999999999998765
No 44
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=98.82 E-value=8.5e-09 Score=104.75 Aligned_cols=105 Identities=15% Similarity=0.211 Sum_probs=68.1
Q ss_pred cEEEEEcChhHH--H---HHHHcCCCcCCCCEEEECcCCcCccCcHHHHHHHHhccCCCCCcEEEEcCccHHHHHHHH--
Q 002976 69 QRFIFNAGEGLQ--R---FCTEHKIKLSKVDHIFLSRVCSETAGGLPGLLLTLAGIGDEGLSVNVWGPSDLKYLVDAM-- 141 (861)
Q Consensus 69 ~~yLfD~GeGtq--r---~l~~~~i~~~ki~~IFiTH~H~DHi~GLpgll~t~~~~~~~~~~l~IyGP~gl~~~l~~~-- 141 (861)
.++|||||.+.. + ++.+....+.++++|||||.|.||+.||+.|+........ .||||+.+...+...
T Consensus 1 ~~iLiD~g~~~~~~~~~~~~~~~~~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~-----~i~~~~~~~~~l~~~~~ 75 (194)
T PF12706_consen 1 HRILIDCGPGTRSLRLRQQIMQELEDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPK-----PIYGPPETKEFLREYKF 75 (194)
T ss_dssp SEEEESE-TTHHHHTHCHHHTCSSSSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTT-----EEEECHHHHHHHHHHHH
T ss_pred CEEEEeCCCCcccccccccccccccccCCCCEEEECCCCccccCChHHHHHHhhcccc-----eEEecHHHHHHHHhhhc
Confidence 479999999987 2 2222112223899999999999999999999987665432 699999998888742
Q ss_pred HhhcccC--ceeeeeecCCCCCCCCcCCCCccCCCceeEeeCCcEEEEEEEcCCCC
Q 002976 142 KSFIPHA--AMVHTHCFGPAPSSDASLPDSAKSANHIILVDNELAKISAILLKPSC 195 (861)
Q Consensus 142 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~V~~~~l~h~~ 195 (861)
....... ....... ...+..++.++++|+++++.|..
T Consensus 76 ~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~i~~~~~~H~~ 114 (194)
T PF12706_consen 76 GILDLYPEEDNFDIIE-----------------ISPGDEFEIGDFRITPFPANHGP 114 (194)
T ss_dssp THHTTCCTTSGEEEEE-----------------ECTTEEEEETTEEEEEEEEESSS
T ss_pred ccccccccccceeEEE-----------------eccCceEEeceEEEEEEeccccc
Confidence 1111000 0000011 12344677788999999999975
No 45
>PRK04286 hypothetical protein; Provisional
Probab=98.81 E-value=1.8e-08 Score=109.38 Aligned_cols=88 Identities=13% Similarity=0.051 Sum_probs=60.9
Q ss_pred eEEEEEeeCCCCCCCCcEEEEEeCCcEEEEEcChhH--H---------------HHHHHcCCCcCCCCEEEECcCCcCcc
Q 002976 44 SYVQILGTGMDTQDTSPSVLLFFDNQRFIFNAGEGL--Q---------------RFCTEHKIKLSKVDHIFLSRVCSETA 106 (861)
Q Consensus 44 ~~l~~LGtgs~~~~~~~slll~~~~~~yLfD~GeGt--q---------------r~l~~~~i~~~ki~~IFiTH~H~DHi 106 (861)
|++.+||++|. ...++|++|..++.++|+|+|-++ + ..+.+....+.++++|||||.|+||+
T Consensus 1 m~~~~l~s~s~-g~~~~~~~I~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi 79 (298)
T PRK04286 1 MKIIPLASESL-GVRSMATFVETKDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHH 79 (298)
T ss_pred CEEEEEEeCCC-CceeeEEEEEECCeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccC
Confidence 67999999862 224589999999999999999553 1 22333455667899999999999999
Q ss_pred CcHHHHHHHHhccCCCCCcEEEEcCccHH
Q 002976 107 GGLPGLLLTLAGIGDEGLSVNVWGPSDLK 135 (861)
Q Consensus 107 ~GLpgll~t~~~~~~~~~~l~IyGP~gl~ 135 (861)
.|+.-++ ...+.+..++.||+...+.
T Consensus 80 ~g~~~~~---y~~~~~~~~i~iy~~~~~~ 105 (298)
T PRK04286 80 TPFYEDP---YELSDEEIPKEIYKGKIVL 105 (298)
T ss_pred CCccccc---cccccccchHHHhcCceec
Confidence 8885542 1111122246677765543
No 46
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=98.62 E-value=1.8e-07 Score=105.95 Aligned_cols=76 Identities=13% Similarity=0.130 Sum_probs=52.1
Q ss_pred ccEEEEEEeCCceEEEeCCcch-HHHHHHHhCccchhhhhccccEEEEeccchhhhccHHHHHHHHHHhhcCCCCCCeEE
Q 002976 510 VSSIYVNLFSKGSLLLDCGEGT-LGQLKRRYGVEGADSAVRKLRCIWISHIHADHHAGLARILALRRDLLKGVPHEPLLV 588 (861)
Q Consensus 510 ~Ss~ll~~~~~~~iLlDcGegt-~~qL~r~~g~~~~~~~l~~i~~IfISH~H~DH~~GL~~ll~~~~~~~~g~~~~pl~I 588 (861)
.+|+||. ++..+|||||.+. ..++...... ...+.+|++|++||.|.||++|++.+++.. +...|
T Consensus 33 ~NsyLI~--~~~~vLIDtg~~~~~~~~~~~l~~---~~~~~~Id~IilTH~H~DHiggl~~l~~~~---------p~a~V 98 (394)
T PRK11921 33 YNSYLIK--DEKTVLIDTVWQPFAKEFVENLKK---EIDLDKIDYIVANHGEIDHSGALPELMKEI---------PDTPI 98 (394)
T ss_pred EEEEEEe--CCCEEEEeCCCCCcHHHHHHHHHh---hcCcccCCEEEeCCCCCchhhHHHHHHHHC---------CCCEE
Confidence 3688885 4568999999643 2233321110 002468999999999999999999886531 34679
Q ss_pred EeCchHHHHHH
Q 002976 589 VGPGPLKRYLD 599 (861)
Q Consensus 589 ~~p~~~~~~L~ 599 (861)
|+++....++.
T Consensus 99 ~~~~~~~~~l~ 109 (394)
T PRK11921 99 YCTKNGAKSLK 109 (394)
T ss_pred EECHHHHHHHH
Confidence 99988776665
No 47
>PRK00685 metal-dependent hydrolase; Provisional
Probab=98.62 E-value=1.3e-07 Score=98.96 Aligned_cols=130 Identities=16% Similarity=0.063 Sum_probs=80.2
Q ss_pred eEEEEEeeCCCCCCCCcEEEEEeCCcEEEEEcCh---hHHHHHHHcCCCcCCCCEEEECcCCcCccCcHHHHHHHHhccC
Q 002976 44 SYVQILGTGMDTQDTSPSVLLFFDNQRFIFNAGE---GLQRFCTEHKIKLSKVDHIFLSRVCSETAGGLPGLLLTLAGIG 120 (861)
Q Consensus 44 ~~l~~LGtgs~~~~~~~slll~~~~~~yLfD~Ge---Gtqr~l~~~~i~~~ki~~IFiTH~H~DHi~GLpgll~t~~~~~ 120 (861)
|++++||++ |++|+.++.++|+|++- ... .+ .....+++.|||||.|.||++|+..++.
T Consensus 1 m~i~~lG~s--------~~li~~~~~~iLiDP~~~~~~~~-~~---~~~~~~id~vliTH~H~DH~~~~~~~~~------ 62 (228)
T PRK00685 1 MKITWLGHS--------AFLIETGGKKILIDPFITGNPLA-DL---KPEDVKVDYILLTHGHGDHLGDTVEIAK------ 62 (228)
T ss_pred CEEEEEcce--------EEEEEECCEEEEECCCCCCCCCC-CC---ChhcCcccEEEeCCCCccccccHHHHHH------
Confidence 689999963 89999999999999732 221 11 1122379999999999999999876532
Q ss_pred CCCCcEEEEcCccHHHHHHHHHhhcccCceeeeeecCCCCCCCCcCCCCccCCCceeEeeCCcEEEEEEEcCCCCCCCCC
Q 002976 121 DEGLSVNVWGPSDLKYLVDAMKSFIPHAAMVHTHCFGPAPSSDASLPDSAKSANHIILVDNELAKISAILLKPSCSDGSP 200 (861)
Q Consensus 121 ~~~~~l~IyGP~gl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~V~~~~l~h~~~~~~~ 200 (861)
+. .+.||+|+++...+... .+. .... .+.+..++.++++|++++..|.......
T Consensus 63 ~~--~~~v~~~~~~~~~~~~~-~~~------~~~~-----------------~~~~~~~~~~~~~i~~~p~~H~~~~~~~ 116 (228)
T PRK00685 63 RT--GATVIANAELANYLSEK-GVE------KTHP-----------------MNIGGTVEFDGGKVKLTPALHSSSFIDE 116 (228)
T ss_pred hC--CCEEEEeHHHHHHHHhc-CCC------ceee-----------------ccCCCcEEECCEEEEEEEEEcCCCCcCC
Confidence 11 36699998876655421 000 0011 1223345557899999999996411000
Q ss_pred --CCCCCCeeEEEEEeCCc
Q 002976 201 --VKPGETSVIYVCELPEI 217 (861)
Q Consensus 201 --~~~~~~s~gY~~~~~~~ 217 (861)
...-..++||+|+.++.
T Consensus 117 ~~~~~~~~~~g~~i~~~~~ 135 (228)
T PRK00685 117 DGITYLGNPTGFVITFEGK 135 (228)
T ss_pred CCcccCCCceEEEEEECCe
Confidence 00001257888876543
No 48
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=98.61 E-value=1.6e-07 Score=95.96 Aligned_cols=77 Identities=25% Similarity=0.298 Sum_probs=58.6
Q ss_pred CCCCccEEEEEEeCCceEEEeCCcch--HHHHHHHhCccchhhhhccccEEEEeccchhhhccHHHHHHHHHHhhcCCCC
Q 002976 506 KYRNVSSIYVNLFSKGSLLLDCGEGT--LGQLKRRYGVEGADSAVRKLRCIWISHIHADHHAGLARILALRRDLLKGVPH 583 (861)
Q Consensus 506 ~~Rn~Ss~ll~~~~~~~iLlDcGegt--~~qL~r~~g~~~~~~~l~~i~~IfISH~H~DH~~GL~~ll~~~~~~~~g~~~ 583 (861)
..+.+-|+||+. ++..||||.|... +..=.+.+|. .+++|++|+|||.|.||+.||+.++..+ .
T Consensus 18 ~a~hGfS~LVE~-~~~riLFDtG~~~~~ll~Na~~lgv-----d~~did~vvlSHgH~DH~GGL~~~~~~~--------~ 83 (259)
T COG1237 18 RAEHGFSALVED-EGTRILFDTGTDSDVLLHNARLLGV-----DLRDIDAVVLSHGHYDHTGGLPYLLEEN--------N 83 (259)
T ss_pred cccCceEEEEEc-CCeEEEEeCCCCcHHHHHHHHHcCC-----CcccCcEEEEeCCCccccCchHhHHhcc--------C
Confidence 345567889987 6789999999443 3222234676 4789999999999999999999887642 3
Q ss_pred CCeEEEeCchHHH
Q 002976 584 EPLLVVGPGPLKR 596 (861)
Q Consensus 584 ~pl~I~~p~~~~~ 596 (861)
+.+.||+++....
T Consensus 84 ~~i~v~ahp~af~ 96 (259)
T COG1237 84 PGIPVYAHPDAFK 96 (259)
T ss_pred CCceEEeChHHHh
Confidence 5788999888755
No 49
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=98.57 E-value=3e-07 Score=92.00 Aligned_cols=74 Identities=23% Similarity=0.323 Sum_probs=57.8
Q ss_pred CCCcEEEEEeCCcEEEEEcChhHH-HH---HHHcCCCcCCCCEEEECcCCcCccCcHHHHHHHHhccCCCCCcEEEEcCc
Q 002976 57 DTSPSVLLFFDNQRFIFNAGEGLQ-RF---CTEHKIKLSKVDHIFLSRVCSETAGGLPGLLLTLAGIGDEGLSVNVWGPS 132 (861)
Q Consensus 57 ~~~~slll~~~~~~yLfD~GeGtq-r~---l~~~~i~~~ki~~IFiTH~H~DHi~GLpgll~t~~~~~~~~~~l~IyGP~ 132 (861)
+.++|++|+.++..+|||||.+.. +. +.+.+ ..+++.|||||.|+||++|++.+... . .+.||+|+
T Consensus 4 ~~~~~~li~~~~~~iliD~g~~~~~~~~~~l~~~~--~~~i~~i~iTH~H~DH~~g~~~~~~~------~--~~~i~~~~ 73 (183)
T smart00849 4 VGVNSYLVEGDGGAILIDTGPGEAEDLLAELKKLG--PKDIDAIILTHGHPDHIGGLPELLEA------P--GAPVYAPE 73 (183)
T ss_pred cceeEEEEEeCCceEEEeCCCChhHHHHHHHHHcC--chhhcEEEecccCcchhccHHHHHhC------C--CCcEEEch
Confidence 356799999999999999996543 22 44444 67899999999999999999888753 1 35589999
Q ss_pred cHHHHHHH
Q 002976 133 DLKYLVDA 140 (861)
Q Consensus 133 gl~~~l~~ 140 (861)
....++..
T Consensus 74 ~~~~~~~~ 81 (183)
T smart00849 74 GTAELLKD 81 (183)
T ss_pred hhhHHHhc
Confidence 88776654
No 50
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=98.56 E-value=3.4e-07 Score=96.88 Aligned_cols=64 Identities=30% Similarity=0.414 Sum_probs=44.6
Q ss_pred cEEEEEEeCCceEEEeCCcch--HHHHHHHhCccchhhhhccccEEEEeccchhhhccHHHHHHHHHHhhcCCCCCCeEE
Q 002976 511 SSIYVNLFSKGSLLLDCGEGT--LGQLKRRYGVEGADSAVRKLRCIWISHIHADHHAGLARILALRRDLLKGVPHEPLLV 588 (861)
Q Consensus 511 Ss~ll~~~~~~~iLlDcGegt--~~qL~r~~g~~~~~~~l~~i~~IfISH~H~DH~~GL~~ll~~~~~~~~g~~~~pl~I 588 (861)
-+++|..+++..+|||+|.+. ...|.+ .| .++++|++||.|.||++|+..+.... ++.|
T Consensus 11 ~~yli~~~~~~~ilID~g~~~~i~~~l~~-~g--------~~l~~Il~TH~H~DHigG~~~l~~~~----------~~~V 71 (248)
T TIGR03413 11 YIWLLHDPDGQAAVVDPGEAEPVLDALEA-RG--------LTLTAILLTHHHHDHVGGVAELLEAF----------PAPV 71 (248)
T ss_pred EEEEEEcCCCCEEEEcCCChHHHHHHHHH-cC--------CeeeEEEeCCCCccccCCHHHHHHHC----------CCeE
Confidence 456665433479999999753 222222 23 25899999999999999999885431 2678
Q ss_pred EeCch
Q 002976 589 VGPGP 593 (861)
Q Consensus 589 ~~p~~ 593 (861)
|++..
T Consensus 72 ~~~~~ 76 (248)
T TIGR03413 72 YGPAE 76 (248)
T ss_pred Eeccc
Confidence 88764
No 51
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=98.49 E-value=2.6e-07 Score=94.45 Aligned_cols=74 Identities=24% Similarity=0.355 Sum_probs=57.7
Q ss_pred CCCcEEEEEeCCcEEEEEcChh---HHHHHHHcCCCcCCCCEEEECcCCcCccCcHHHHHHHHhccCCCCCcEEEEcCcc
Q 002976 57 DTSPSVLLFFDNQRFIFNAGEG---LQRFCTEHKIKLSKVDHIFLSRVCSETAGGLPGLLLTLAGIGDEGLSVNVWGPSD 133 (861)
Q Consensus 57 ~~~~slll~~~~~~yLfD~GeG---tqr~l~~~~i~~~ki~~IFiTH~H~DHi~GLpgll~t~~~~~~~~~~l~IyGP~g 133 (861)
+-+=|++|..++.++|||.|.. ....+...++++.++++|+|||-||||++||++++.. ..+ .+.||.+|+
T Consensus 20 ~hGfS~LVE~~~~riLFDtG~~~~~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~----~~~--~i~v~ahp~ 93 (259)
T COG1237 20 EHGFSALVEDEGTRILFDTGTDSDVLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEE----NNP--GIPVYAHPD 93 (259)
T ss_pred cCceEEEEEcCCeEEEEeCCCCcHHHHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHhc----cCC--CceEEeChH
Confidence 4567899999999999999942 2334666799999999999999999999999977632 212 467999876
Q ss_pred HHH
Q 002976 134 LKY 136 (861)
Q Consensus 134 l~~ 136 (861)
...
T Consensus 94 af~ 96 (259)
T COG1237 94 AFK 96 (259)
T ss_pred HHh
Confidence 543
No 52
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=98.47 E-value=1.2e-06 Score=100.92 Aligned_cols=137 Identities=18% Similarity=0.131 Sum_probs=90.7
Q ss_pred eeEEEEEeeCCCCCCCCcEEEEEeCCcEEEEEcChhHH--------------HHHHHcCCCcCCCCEEEECcCCcCccCc
Q 002976 43 LSYVQILGTGMDTQDTSPSVLLFFDNQRFIFNAGEGLQ--------------RFCTEHKIKLSKVDHIFLSRVCSETAGG 108 (861)
Q Consensus 43 ~~~l~~LGtgs~~~~~~~slll~~~~~~yLfD~GeGtq--------------r~l~~~~i~~~ki~~IFiTH~H~DHi~G 108 (861)
.+++..||-= .- -..+|.++.+++..++||||--+- ..+.++. .++++|||||.|-||+||
T Consensus 8 ~i~i~~lGG~-~E-iGkN~~vve~~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~---~kvkgI~lTHgHeDHIGa 82 (555)
T COG0595 8 KIKIFALGGV-GE-IGKNMYVVEYGDDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENK---DKVKGIFLTHGHEDHIGA 82 (555)
T ss_pred ceEEEEecCh-hh-hccceEEEEECCcEEEEECccccCccccccccEEecChHHhhhcc---ccceEEEecCCchhhccc
Confidence 4666666621 11 135799999999999999995321 1233332 379999999999999999
Q ss_pred HHHHHHHHhccCCCCCcEEEEcCccHHHHHHHHHhhcc-cCceeeeeecCCCCCCCCcCCCCccCCCceeEeeCCcEEEE
Q 002976 109 LPGLLLTLAGIGDEGLSVNVWGPSDLKYLVDAMKSFIP-HAAMVHTHCFGPAPSSDASLPDSAKSANHIILVDNELAKIS 187 (861)
Q Consensus 109 Lpgll~t~~~~~~~~~~l~IyGP~gl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~V~ 187 (861)
+|.++.... .+.|||++-+..++...+.-.. ........++ .+...++.+.+.|+
T Consensus 83 ip~ll~~~~-------~~piy~s~lt~~Li~~k~~~~~~~~~~~~~~ev-----------------~~~~~i~~~~~~v~ 138 (555)
T COG0595 83 LPYLLKQVL-------FAPIYASPLTAALIKEKLKEHGLFKNENELHEV-----------------KPGSEIKFGSFEVE 138 (555)
T ss_pred hHHHHhcCC-------cCceecCHhhHHHHHHHHHHhccccccCceEEe-----------------CCCCeEEeCcEEEE
Confidence 999875321 2569999988777776654110 0000111111 22334555889999
Q ss_pred EEEcCCCCCCCCCCCCCCCeeEEEEEeCCc
Q 002976 188 AILLKPSCSDGSPVKPGETSVIYVCELPEI 217 (861)
Q Consensus 188 ~~~l~h~~~~~~~~~~~~~s~gY~~~~~~~ 217 (861)
++++.|.. ..|+||.++++..
T Consensus 139 f~~vtHSI---------Pds~g~~i~Tp~G 159 (555)
T COG0595 139 FFPVTHSI---------PDSLGIVIKTPEG 159 (555)
T ss_pred EEeecccC---------ccceEEEEECCCc
Confidence 99999985 3488998888764
No 53
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=98.36 E-value=6.7e-07 Score=105.92 Aligned_cols=91 Identities=15% Similarity=0.238 Sum_probs=65.0
Q ss_pred CCeeEEEEEeeCCCCCCCCcEEEEEeCCcEEEEEcChhHHH-------HHHHcCCCcCCCCEEEECcCCcCccCcHHHHH
Q 002976 41 NTLSYVQILGTGMDTQDTSPSVLLFFDNQRFIFNAGEGLQR-------FCTEHKIKLSKVDHIFLSRVCSETAGGLPGLL 113 (861)
Q Consensus 41 ~~~~~l~~LGtgs~~~~~~~slll~~~~~~yLfD~GeGtqr-------~l~~~~i~~~ki~~IFiTH~H~DHi~GLpgll 113 (861)
...|++++||.+... +++|++|..++.++|||||-.... .+....+.+.++++|||||.|.||+||||.|+
T Consensus 172 ~~~m~i~~LGg~~eV--G~Sc~Ll~~~~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~L~ 249 (630)
T TIGR03675 172 DRWVRVTALGGFREV--GRSALLLSTPESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLF 249 (630)
T ss_pred CCeEEEEEEecCCcc--CCCEEEEEECCCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHhhHHHHH
Confidence 345899999976433 357999999999999999965421 01112234668999999999999999999876
Q ss_pred HHHhccCCCCCcEEEEcCccHHHHHHH
Q 002976 114 LTLAGIGDEGLSVNVWGPSDLKYLVDA 140 (861)
Q Consensus 114 ~t~~~~~~~~~~l~IyGP~gl~~~l~~ 140 (861)
.. .. ...||+.+.+..++..
T Consensus 250 k~-g~------~gpIY~T~pT~~l~~~ 269 (630)
T TIGR03675 250 KY-GY------DGPVYCTPPTRDLMTL 269 (630)
T ss_pred Hh-CC------CCceeecHHHHHHHHH
Confidence 32 11 1248988877665543
No 54
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=98.35 E-value=1e-06 Score=98.13 Aligned_cols=59 Identities=20% Similarity=0.307 Sum_probs=50.1
Q ss_pred CceeeEEeeccCCCCceEEEeccccccccCcccCCcEEEEeCCCCCChhHHhh----c-CCCcEEEEeccCCCC
Q 002976 694 LETLISFPVVHCPQAFGFALKAAERINSVGKVIPGWKIVYSGDTRPCPELVEA----S-RGATVLIHEATFEDG 762 (861)
Q Consensus 694 ~~~i~~~pv~H~~~a~G~~i~~~~~~~~~~~~~~G~ki~YsGDT~p~~~l~~~----~-~~aDlLIhEaTf~d~ 762 (861)
+..++.++++||++++-+.++.. .|.+++|+||.|.+..+.+. . +..|.|..|+||.+.
T Consensus 172 ~~~vt~ldAnHCPGa~mf~F~~~----------~~~~~lhtGDFR~s~~m~~~p~~~~~~~i~~lyLDtTycnp 235 (481)
T KOG1361|consen 172 GIQVTLLDANHCPGAVMFLFELS----------FGPCILHTGDFRASADMSKEPALTLEQTIDILYLDTTYCNP 235 (481)
T ss_pred ceEEEEeccccCCCceEEEeecC----------CCceEEecCCcccChhhhhChHHhcCCccceEEEeecccCC
Confidence 47899999999999999999872 56799999999999877652 2 679999999998764
No 55
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=98.34 E-value=5e-06 Score=88.11 Aligned_cols=64 Identities=23% Similarity=0.387 Sum_probs=43.9
Q ss_pred EEEEEEeCCceEEEeCCcch--HHHHHHHhCccchhhhhccccEEEEeccchhhhccHHHHHHHHHHhhcCCCCCCeEEE
Q 002976 512 SIYVNLFSKGSLLLDCGEGT--LGQLKRRYGVEGADSAVRKLRCIWISHIHADHHAGLARILALRRDLLKGVPHEPLLVV 589 (861)
Q Consensus 512 s~ll~~~~~~~iLlDcGegt--~~qL~r~~g~~~~~~~l~~i~~IfISH~H~DH~~GL~~ll~~~~~~~~g~~~~pl~I~ 589 (861)
+++|...++..+|||+|.+- +..+.+ .| .++++|++||.|.||++|+..|.... +...||
T Consensus 14 ~~li~~~~~~~ilIDpg~~~~vl~~l~~-~g--------~~l~~IllTH~H~DHigG~~~l~~~~---------~~~~V~ 75 (251)
T PRK10241 14 IWVLNDEAGRCLIVDPGEAEPVLNAIAE-NN--------WQPEAIFLTHHHHDHVGGVKELVEKF---------PQIVVY 75 (251)
T ss_pred EEEEEcCCCcEEEECCCChHHHHHHHHH-cC--------CccCEEEeCCCCchhhccHHHHHHHC---------CCCEEE
Confidence 35554434568999999863 222332 33 25789999999999999999886542 235788
Q ss_pred eCch
Q 002976 590 GPGP 593 (861)
Q Consensus 590 ~p~~ 593 (861)
++..
T Consensus 76 ~~~~ 79 (251)
T PRK10241 76 GPQE 79 (251)
T ss_pred eccc
Confidence 8754
No 56
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=98.33 E-value=2.6e-06 Score=98.36 Aligned_cols=77 Identities=13% Similarity=0.198 Sum_probs=53.2
Q ss_pred ccEEEEEEeCCceEEEeCCcch-HHHHHHHhCccchhhhhccccEEEEeccchhhhccHHHHHHHHHHhhcCCCCCCeEE
Q 002976 510 VSSIYVNLFSKGSLLLDCGEGT-LGQLKRRYGVEGADSAVRKLRCIWISHIHADHHAGLARILALRRDLLKGVPHEPLLV 588 (861)
Q Consensus 510 ~Ss~ll~~~~~~~iLlDcGegt-~~qL~r~~g~~~~~~~l~~i~~IfISH~H~DH~~GL~~ll~~~~~~~~g~~~~pl~I 588 (861)
..|+||. ++..+|||+|... ..++...... ...+.+|++|++||.|.||++|++.|+... +...|
T Consensus 35 ~NsYLI~--~~~~vLIDtg~~~~~~~~l~~l~~---~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~---------p~a~V 100 (479)
T PRK05452 35 YNSYLIR--EEKNVLIDTVDHKFSREFVQNLRN---EIDLADIDYIVINHAEEDHAGALTELMAQI---------PDTPI 100 (479)
T ss_pred EEEEEEE--CCCEEEEeCCCcccHHHHHHHHHh---cCCHhhCCEEEeCCCCcchhchHHHHHHHC---------CCCEE
Confidence 4688886 4678999999642 3333332210 001468999999999999999999887531 34679
Q ss_pred EeCchHHHHHHH
Q 002976 589 VGPGPLKRYLDA 600 (861)
Q Consensus 589 ~~p~~~~~~L~~ 600 (861)
|+++.....+..
T Consensus 101 ~~s~~~~~~l~~ 112 (479)
T PRK05452 101 YCTANAIDSING 112 (479)
T ss_pred EECHHHHHHHHH
Confidence 999887766643
No 57
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=98.33 E-value=2.1e-06 Score=92.04 Aligned_cols=74 Identities=20% Similarity=0.210 Sum_probs=54.6
Q ss_pred CeeEEEEEeeCCC--CCC----------CCcEEEEEeCCcEEEEEcChhHHHHHHHcCCCcCCCCEEEECcCCcCccCcH
Q 002976 42 TLSYVQILGTGMD--TQD----------TSPSVLLFFDNQRFIFNAGEGLQRFCTEHKIKLSKVDHIFLSRVCSETAGGL 109 (861)
Q Consensus 42 ~~~~l~~LGtgs~--~~~----------~~~slll~~~~~~yLfD~GeGtqr~l~~~~i~~~ki~~IFiTH~H~DHi~GL 109 (861)
+.|++++||||+. .+. ...++-+....++++||+|.+...+..+.++ .++++||+||.|+||+.|+
T Consensus 2 ~~~~f~~lgsG~~gg~p~~~~~~~~c~~~~~~v~~~~~~~~~lid~g~~~~~~~~~~~~--~~idai~~TH~H~DHi~Gl 79 (269)
T COG1235 2 GGMRFTVLGSGSSGGVPVIGCDCRACGGNRLRVDCGVGVKTLLIDAGPDLRDQGLRLGV--SDLDAILLTHEHSDHIQGL 79 (269)
T ss_pred CceEEEEEEEcCCCCceecCCCccccCCceEEEEEEecceeEEEecChhHHhhhhcccc--cccCeEEEecccHHhhcCh
Confidence 3589999999962 221 1123333445568899999998877766554 5899999999999999999
Q ss_pred HHHHHHHh
Q 002976 110 PGLLLTLA 117 (861)
Q Consensus 110 pgll~t~~ 117 (861)
+-|...+.
T Consensus 80 ~~l~~~~~ 87 (269)
T COG1235 80 DDLRRAYT 87 (269)
T ss_pred HHHHHHhc
Confidence 99876543
No 58
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=98.31 E-value=2.5e-06 Score=86.41 Aligned_cols=177 Identities=16% Similarity=0.181 Sum_probs=108.3
Q ss_pred hccccEEEEeccchhhhccHHHHHHHHHHhhcCCCCCCeEEEeCchHHHHHHHHHhcccccceeeecccccccccccccC
Q 002976 548 VRKLRCIWISHIHADHHAGLARILALRRDLLKGVPHEPLLVVGPGPLKRYLDAYERLEDLDMQFLHCRYTREASWNDFEG 627 (861)
Q Consensus 548 l~~i~~IfISH~H~DH~~GL~~ll~~~~~~~~g~~~~pl~I~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (861)
...|+-.||||.|.||+.|+. +..- ..+ +.++-+|||-+.+.+.|+.+.. +|.-|+++..
T Consensus 110 ~Q~I~~y~ITH~HLDHIsGlV--inSp---~~~-~qkkkTI~gl~~tIDvL~khvF--------------N~lvWP~lt~ 169 (356)
T COG5212 110 RQSINSYFITHAHLDHISGLV--INSP---DDS-KQKKKTIYGLADTIDVLRKHVF--------------NWLVWPNLTD 169 (356)
T ss_pred hhhhhheEeccccccchhcee--ecCc---ccc-ccCCceEEechhHHHHHHHHhh--------------cccccCCccc
Confidence 467999999999999999984 2111 111 2467799999999999987731 3345766632
Q ss_pred CCCCcccCCCCCCCCCccccccccchhhhcccccccccccCCCCCCCCCcchhhhHhHHHHHHHcC--CceeeEEeeccC
Q 002976 628 NGEPVKNLSTPGSPFSTEGLINKTEANLFAKGSCMQSVWKGPGIPVDNNAAFPLLKNLKNVLNEAG--LETLISFPVVHC 705 (861)
Q Consensus 628 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lg--~~~i~~~pv~H~ 705 (861)
.+. . .++++.. +|.. ...++ .+++.++||.|.
T Consensus 170 ~gs---------~------------------~~~~qvv--~P~~-----------------~~slt~t~l~~~pfpv~Hg 203 (356)
T COG5212 170 SGS---------G------------------TYRMQVV--RPAQ-----------------SLSLTLTRLTGEPFPVSHG 203 (356)
T ss_pred ccC---------c------------------eEEEEEe--ChhH-----------------eeeeeeeeecceeeeccCC
Confidence 110 0 0111111 1111 11222 246889999998
Q ss_pred C----C--CceEEEeccccccccCcccCCcEEEEeCCCCCCh--------hHHhhc------CCCcEEEEeccCCCChHH
Q 002976 706 P----Q--AFGFALKAAERINSVGKVIPGWKIVYSGDTRPCP--------ELVEAS------RGATVLIHEATFEDGMME 765 (861)
Q Consensus 706 ~----~--a~G~~i~~~~~~~~~~~~~~G~ki~YsGDT~p~~--------~l~~~~------~~aDlLIhEaTf~d~~~~ 765 (861)
. + +..|.|... ....-++|.||+.|.. .++... +...-++.||.+.+.-.
T Consensus 204 ~ktG~p~ySs~~lfr~n---------kS~~~f~~fGDvepD~vese~ll~~~Wr~~ae~I~q~~LkgiliEcS~P~~~~- 273 (356)
T COG5212 204 KKTGSPSYSSMLLFRSN---------KSNEFFAYFGDVEPDDVESEKLLDTVWRKLAEKITQQQLKGILIECSYPNDVA- 273 (356)
T ss_pred cccCCcccceEEEEecC---------CCcceEEEecCCCcchhhhhHHHHHHHHHHHHhhhHHhhCceEEEecCCCCCC-
Confidence 6 2 356777652 1345799999999852 233321 24456889999987643
Q ss_pred HHHhcCCCCHHHHHHHHHH----------cCCCEEEEeeccCCCC
Q 002976 766 EAIAKNHSTTKEAIDVGSS----------AGVYRIILTHFSQRYP 800 (861)
Q Consensus 766 ~a~~~~HsT~~eA~~va~~----------~~ak~lvLtHfS~Ry~ 800 (861)
...-.+|+|+.-.+.-... +.-=.+|+||.-....
T Consensus 274 ~~~LfGH~~P~~L~nEL~~L~~l~~s~~~l~gL~vviTHiKs~p~ 318 (356)
T COG5212 274 DNKLFGHMTPTWLLNELKKLEQLSGSGQPLKGLPVVITHIKSSPQ 318 (356)
T ss_pred hhHhhcccChHHHHHHHHHHHHHhccCCCCCCccEEEEeccCccc
Confidence 2357899999865544332 2223789999976543
No 59
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=98.26 E-value=3.5e-06 Score=84.48 Aligned_cols=89 Identities=18% Similarity=0.284 Sum_probs=66.9
Q ss_pred ceeeEEeeccCCC----------CceEEEeccccccccCcccCCcEEEEeCCCCCCh-hHHhhcC---CCcEEEEec-cC
Q 002976 695 ETLISFPVVHCPQ----------AFGFALKAAERINSVGKVIPGWKIVYSGDTRPCP-ELVEASR---GATVLIHEA-TF 759 (861)
Q Consensus 695 ~~i~~~pv~H~~~----------a~G~~i~~~~~~~~~~~~~~G~ki~YsGDT~p~~-~l~~~~~---~aDlLIhEa-Tf 759 (861)
.+|.+.|+.|..+ -.+|.+.. .+.+++|.|||++|+ .|.++++ .+||..+-+ .|
T Consensus 198 ~ti~~tPaqHw~~R~L~D~Nk~LW~sw~v~g-----------~~nrfffaGDTGyc~~~F~~IgerfGpfdLAaiPiGaY 266 (343)
T KOG3798|consen 198 YTIWCLPAQHWGQRGLFDRNKRLWSSWAVIG-----------ENNRFFFAGDTGYCDGEFKKIGERFGPFDLAAIPIGAY 266 (343)
T ss_pred EEEEEcchhhhcccccccCCcceeeeeEEec-----------CCceEEecCCCCcccHHHHHHHHhcCCcceeecccccc
Confidence 4566777777653 13555554 456999999999998 6766654 489966665 46
Q ss_pred CCChHHHHHhcCCCCHHHHHHHHHHcCCCEEEEeeccC
Q 002976 760 EDGMMEEAIAKNHSTTKEAIDVGSSAGVYRIILTHFSQ 797 (861)
Q Consensus 760 ~d~~~~~a~~~~HsT~~eA~~va~~~~ak~lvLtHfS~ 797 (861)
..+.. ....|-.++||+++-+..++|+.+-.|..-
T Consensus 267 ePrWf---mK~~HInPeEav~Ihkdv~arns~gIHWGT 301 (343)
T KOG3798|consen 267 EPRWF---MKSQHINPEEAVEIHKDVRAKNSIGIHWGT 301 (343)
T ss_pred Cchhh---cccccCCHHHHHHHHHHHhhhcceeEeeee
Confidence 66543 478899999999999999999999998753
No 60
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=98.20 E-value=2.2e-05 Score=94.79 Aligned_cols=65 Identities=25% Similarity=0.423 Sum_probs=50.8
Q ss_pred ccEEEEEecCCCCCCCCCCccEEEEEEeCCceEEEeCCcch----------HHHHHHHhCccchhhhhccccEEEEeccc
Q 002976 491 DLEIVLLGTGSSQPSKYRNVSSIYVNLFSKGSLLLDCGEGT----------LGQLKRRYGVEGADSAVRKLRCIWISHIH 560 (861)
Q Consensus 491 ~~~i~fLGTGsa~Ps~~Rn~Ss~ll~~~~~~~iLlDcGegt----------~~qL~r~~g~~~~~~~l~~i~~IfISH~H 560 (861)
..+|+||=.|- +.|++|+. ++..+|+|||... ..-| +..|. + ||+|+|||.|
T Consensus 439 ~~~v~~lDVGq--------Gdaili~~-~~~~iLIDtG~~~~~~~~~~~~l~p~L-~~~Gi-------~-ID~lilTH~d 500 (662)
T TIGR00361 439 SWQVDMLDVGQ--------GLAMFIGA-NGKGILYDTGEPWREGSLGEKVIIPFL-TAKGI-------K-LEALILSHAD 500 (662)
T ss_pred CEEEEEEecCC--------ceEEEEEE-CCeEEEEeCCCCCCCCCccHHHHHHHH-HHcCC-------C-cCEEEECCCc
Confidence 57899998776 36899988 5689999999752 1222 22453 5 9999999999
Q ss_pred hhhhccHHHHHHH
Q 002976 561 ADHHAGLARILAL 573 (861)
Q Consensus 561 ~DH~~GL~~ll~~ 573 (861)
.||++|+..+++.
T Consensus 501 ~DHiGGl~~ll~~ 513 (662)
T TIGR00361 501 QDHIGGAEIILKH 513 (662)
T ss_pred hhhhCcHHHHHHh
Confidence 9999999999765
No 61
>PLN02469 hydroxyacylglutathione hydrolase
Probab=98.16 E-value=1.7e-05 Score=84.18 Aligned_cols=65 Identities=20% Similarity=0.195 Sum_probs=43.4
Q ss_pred EEEEEEeC-CceEEEeCCcchHHHHHHHhCccchhhhhccccEEEEeccchhhhccHHHHHHHHHHhhcCCCCCCeEEEe
Q 002976 512 SIYVNLFS-KGSLLLDCGEGTLGQLKRRYGVEGADSAVRKLRCIWISHIHADHHAGLARILALRRDLLKGVPHEPLLVVG 590 (861)
Q Consensus 512 s~ll~~~~-~~~iLlDcGegt~~qL~r~~g~~~~~~~l~~i~~IfISH~H~DH~~GL~~ll~~~~~~~~g~~~~pl~I~~ 590 (861)
+++|...+ +..+|||+|.. ..+..... +.-.+|++|++||.|.||++|+..|.... ..+.||+
T Consensus 14 ~Yli~d~~~~~~vlIDp~~~--~~il~~l~-----~~g~~l~~Il~TH~H~DH~gG~~~l~~~~---------~~~~V~~ 77 (258)
T PLN02469 14 AYLIIDESTKDAAVVDPVDP--EKVLQAAH-----EHGAKIKLVLTTHHHWDHAGGNEKIKKLV---------PGIKVYG 77 (258)
T ss_pred EEEEEeCCCCeEEEECCCCh--HHHHHHHH-----HcCCcccEEEecCCCCccccCHHHHHHHC---------CCCEEEE
Confidence 77775422 36899999953 33333111 01147999999999999999999886431 2356887
Q ss_pred Cc
Q 002976 591 PG 592 (861)
Q Consensus 591 p~ 592 (861)
+.
T Consensus 78 ~~ 79 (258)
T PLN02469 78 GS 79 (258)
T ss_pred ec
Confidence 65
No 62
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.13 E-value=5.1e-05 Score=76.63 Aligned_cols=98 Identities=20% Similarity=0.250 Sum_probs=59.4
Q ss_pred HcCCceeeE-EeeccCCC--CceEEEeccccccccCcccCCcEEEEeCCCC-C-ChhHHhhc--CCCcEEEEecc--CCC
Q 002976 691 EAGLETLIS-FPVVHCPQ--AFGFALKAAERINSVGKVIPGWKIVYSGDTR-P-CPELVEAS--RGATVLIHEAT--FED 761 (861)
Q Consensus 691 ~lg~~~i~~-~pv~H~~~--a~G~~i~~~~~~~~~~~~~~G~ki~YsGDT~-p-~~~l~~~~--~~aDlLIhEaT--f~d 761 (861)
++|...|.+ -|+-|+.. -.||++... +. ..+.+|+|+.|+. | .+...++. ++.|++|...- |.=
T Consensus 143 ~fG~t~IefS~pvpHG~eGskLGyVl~v~--V~-----dg~~~i~faSDvqGp~~~~~l~~i~e~~P~v~ii~GPpty~l 215 (304)
T COG2248 143 EFGGTVIEFSPPVPHGREGSKLGYVLMVA--VT-----DGKSSIVFASDVQGPINDEALEFILEKRPDVLIIGGPPTYLL 215 (304)
T ss_pred EeCCEEEEecCCCCCCCcccccceEEEEE--Ee-----cCCeEEEEcccccCCCccHHHHHHHhcCCCEEEecCCchhHh
Confidence 356666665 56788874 688888752 11 1457999999997 4 34444443 48999999873 211
Q ss_pred ChHHHHHhcCCC----CHHHHHHHHHHcCCCEEEEeeccCCCCC
Q 002976 762 GMMEEAIAKNHS----TTKEAIDVGSSAGVYRIILTHFSQRYPK 801 (861)
Q Consensus 762 ~~~~~a~~~~Hs----T~~eA~~va~~~~ak~lvLtHfS~Ry~~ 801 (861)
+ .+.+-. ++...-+++.+.+ +++|+-|.--|-.+
T Consensus 216 g-----~r~~~~~~E~~irNl~~ii~~~~-~~lViDHHllRD~~ 253 (304)
T COG2248 216 G-----YRVGPKSLEKGIRNLERIIEETN-ATLVIDHHLLRDKN 253 (304)
T ss_pred h-----hhcChHHHHHHHHHHHHHHHhCc-ceEEEeehhhcCCC
Confidence 0 011111 2233445555555 78999998776543
No 63
>PLN02398 hydroxyacylglutathione hydrolase
Probab=98.11 E-value=1.3e-05 Score=87.31 Aligned_cols=67 Identities=19% Similarity=0.136 Sum_probs=45.0
Q ss_pred cEEEEEEeC-CceEEEeCCcchHHHHHHHhCccchhhhhccccEEEEeccchhhhccHHHHHHHHHHhhcCCCCCCeEEE
Q 002976 511 SSIYVNLFS-KGSLLLDCGEGTLGQLKRRYGVEGADSAVRKLRCIWISHIHADHHAGLARILALRRDLLKGVPHEPLLVV 589 (861)
Q Consensus 511 Ss~ll~~~~-~~~iLlDcGegt~~qL~r~~g~~~~~~~l~~i~~IfISH~H~DH~~GL~~ll~~~~~~~~g~~~~pl~I~ 589 (861)
-+++|...+ +..++||+|... .+.+... +.-.+|++|++||.|.||++|+..|.+.. +..||
T Consensus 88 y~Yli~d~~t~~~~vVDP~~a~--~vl~~l~-----~~g~~L~~ILlTH~H~DH~GG~~~L~~~~----------ga~V~ 150 (329)
T PLN02398 88 YAYLLHDEDTGTVGVVDPSEAV--PVIDALS-----RKNRNLTYILNTHHHYDHTGGNLELKARY----------GAKVI 150 (329)
T ss_pred EEEEEEECCCCEEEEEcCCCHH--HHHHHHH-----hcCCCceEEEECCCCchhhCCHHHHHHhc----------CCEEE
Confidence 577775422 457999998643 2222111 11257999999999999999999985431 35789
Q ss_pred eCchH
Q 002976 590 GPGPL 594 (861)
Q Consensus 590 ~p~~~ 594 (861)
++...
T Consensus 151 g~~~~ 155 (329)
T PLN02398 151 GSAVD 155 (329)
T ss_pred EehHH
Confidence 88653
No 64
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=98.02 E-value=3.6e-05 Score=81.04 Aligned_cols=61 Identities=23% Similarity=0.237 Sum_probs=40.8
Q ss_pred CCCccEEEEEEeCCceEEEeCCcch--HHHHHHHhCccchhhhhccccEEEEeccchhhhccHHHHHH
Q 002976 507 YRNVSSIYVNLFSKGSLLLDCGEGT--LGQLKRRYGVEGADSAVRKLRCIWISHIHADHHAGLARILA 572 (861)
Q Consensus 507 ~Rn~Ss~ll~~~~~~~iLlDcGegt--~~qL~r~~g~~~~~~~l~~i~~IfISH~H~DH~~GL~~ll~ 572 (861)
..+.+++++...++..+|||||.+. ...+...... .-.+|++|++||.|.||++|+..+..
T Consensus 22 ~~~~~~~~~~~~~~~~~liD~G~~~~~~~~~~~~l~~-----~~~~i~~vilTH~H~DH~gg~~~~~~ 84 (252)
T COG0491 22 LSGNSVYLLVDGEGGAVLIDTGLGDADAEALLEALAA-----LGLDVDAILLTHGHFDHIGGAAVLKE 84 (252)
T ss_pred cccccEEEEEcCCCceEEEeCCCCchHHHHHHHHHHH-----cCCChheeeecCCchhhhccHHHHHh
Confidence 3334455554422379999999886 3444442221 11279999999999999999987754
No 65
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=98.00 E-value=3.9e-05 Score=81.20 Aligned_cols=64 Identities=22% Similarity=0.378 Sum_probs=46.9
Q ss_pred CcEEEEEeCC-cEEEEEcChh--HHHHHHHcCCCcCCCCEEEECcCCcCccCcHHHHHHHHhccCCCCCcEEEEcCcc
Q 002976 59 SPSVLLFFDN-QRFIFNAGEG--LQRFCTEHKIKLSKVDHIFLSRVCSETAGGLPGLLLTLAGIGDEGLSVNVWGPSD 133 (861)
Q Consensus 59 ~~slll~~~~-~~yLfD~GeG--tqr~l~~~~i~~~ki~~IFiTH~H~DHi~GLpgll~t~~~~~~~~~~l~IyGP~g 133 (861)
+.++++..++ ..+|||+|++ +.+.+.+.++ ++++||+||.|+||++|+..+.... ++.|||++.
T Consensus 10 N~~yli~~~~~~~ilID~g~~~~i~~~l~~~g~---~l~~Il~TH~H~DHigG~~~l~~~~--------~~~V~~~~~ 76 (248)
T TIGR03413 10 NYIWLLHDPDGQAAVVDPGEAEPVLDALEARGL---TLTAILLTHHHHDHVGGVAELLEAF--------PAPVYGPAE 76 (248)
T ss_pred EEEEEEEcCCCCEEEEcCCChHHHHHHHHHcCC---eeeEEEeCCCCccccCCHHHHHHHC--------CCeEEeccc
Confidence 3455555443 7999999985 3455666654 4899999999999999999876432 255999875
No 66
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=97.95 E-value=4.8e-05 Score=86.24 Aligned_cols=74 Identities=18% Similarity=0.275 Sum_probs=51.8
Q ss_pred CCcEEEEEeCCcEEEEEcChh--HHHHH--HHcCCCcCCCCEEEECcCCcCccCcHHHHHHHHhccCCCCCcEEEEcCcc
Q 002976 58 TSPSVLLFFDNQRFIFNAGEG--LQRFC--TEHKIKLSKVDHIFLSRVCSETAGGLPGLLLTLAGIGDEGLSVNVWGPSD 133 (861)
Q Consensus 58 ~~~slll~~~~~~yLfD~GeG--tqr~l--~~~~i~~~ki~~IFiTH~H~DHi~GLpgll~t~~~~~~~~~~l~IyGP~g 133 (861)
+.+|++|. ++..+|||+|.+ .+..+ .+..+.+.+|+.|++||.|.||++|++-++... + ...||+++.
T Consensus 32 ~~NsyLI~-~~~~vLIDtg~~~~~~~~~~~l~~~~~~~~Id~IilTH~H~DHiggl~~l~~~~-----p--~a~V~~~~~ 103 (394)
T PRK11921 32 SYNSYLIK-DEKTVLIDTVWQPFAKEFVENLKKEIDLDKIDYIVANHGEIDHSGALPELMKEI-----P--DTPIYCTKN 103 (394)
T ss_pred EEEEEEEe-CCCEEEEeCCCCCcHHHHHHHHHhhcCcccCCEEEeCCCCCchhhHHHHHHHHC-----C--CCEEEECHH
Confidence 34688886 467899999953 22222 122456678999999999999999999876431 1 356899887
Q ss_pred HHHHHH
Q 002976 134 LKYLVD 139 (861)
Q Consensus 134 l~~~l~ 139 (861)
....+.
T Consensus 104 ~~~~l~ 109 (394)
T PRK11921 104 GAKSLK 109 (394)
T ss_pred HHHHHH
Confidence 655554
No 67
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=97.89 E-value=5.1e-06 Score=83.25 Aligned_cols=58 Identities=22% Similarity=0.257 Sum_probs=48.0
Q ss_pred CCcEEEEEeCCcEEEEEcChhHHHHH----HHcCCCcCCCCEEEECcCCcCccCcHHHHHHH
Q 002976 58 TSPSVLLFFDNQRFIFNAGEGLQRFC----TEHKIKLSKVDHIFLSRVCSETAGGLPGLLLT 115 (861)
Q Consensus 58 ~~~slll~~~~~~yLfD~GeGtqr~l----~~~~i~~~ki~~IFiTH~H~DHi~GLpgll~t 115 (861)
.++|++|+.++..+|||||.+..... ...++...+|++||+||.|+||++|++-+...
T Consensus 5 ~~n~~li~~~~~~iliD~G~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~ 66 (194)
T PF00753_consen 5 GSNSYLIEGGDGAILIDTGLDPDFAKELELALLGISGEDIDAVILTHAHPDHIGGLPELLEA 66 (194)
T ss_dssp EEEEEEEEETTEEEEESEBSSHHHHHHHHHHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHH
T ss_pred eEEEEEEEECCEEEEEeCCCCchhhHHhhhhHhhccCCCeEEEEECcccccccccccccccc
Confidence 35799999999999999998755432 23567778999999999999999999988754
No 68
>PLN02962 hydroxyacylglutathione hydrolase
Probab=97.89 E-value=6.9e-05 Score=79.02 Aligned_cols=55 Identities=25% Similarity=0.291 Sum_probs=38.3
Q ss_pred ccEEEEEEe---CCceEEEeCCcchHHHHHH---HhCccchhhhhccccEEEEeccchhhhccHHHHHH
Q 002976 510 VSSIYVNLF---SKGSLLLDCGEGTLGQLKR---RYGVEGADSAVRKLRCIWISHIHADHHAGLARILA 572 (861)
Q Consensus 510 ~Ss~ll~~~---~~~~iLlDcGegt~~qL~r---~~g~~~~~~~l~~i~~IfISH~H~DH~~GL~~ll~ 572 (861)
..|++|-.. .+..+|||+|.....++.+ ..| .+|++|++||.|+||+.|+..|..
T Consensus 23 ~~~Yll~d~~~~~~~avlIDP~~~~~~~~l~~l~~~g--------~~i~~Il~TH~H~DHigg~~~l~~ 83 (251)
T PLN02962 23 TYTYLLADVSHPDKPALLIDPVDKTVDRDLSLVKELG--------LKLIYAMNTHVHADHVTGTGLLKT 83 (251)
T ss_pred eEEEEEEeCCCCCCEEEEECCCCCcHHHHHHHHHHCC--------CeeEEEEcCCCCchhHHHHHHHHH
Confidence 357777432 3568999999643233332 223 368999999999999999988854
No 69
>PRK11539 ComEC family competence protein; Provisional
Probab=97.88 E-value=0.00015 Score=88.78 Aligned_cols=68 Identities=25% Similarity=0.371 Sum_probs=50.9
Q ss_pred CCccEEEEEecCCCCCCCCCCccEEEEEEeCCceEEEeCCcch-----H-HHH---HHHhCccchhhhhccccEEEEecc
Q 002976 489 RDDLEIVLLGTGSSQPSKYRNVSSIYVNLFSKGSLLLDCGEGT-----L-GQL---KRRYGVEGADSAVRKLRCIWISHI 559 (861)
Q Consensus 489 ~~~~~i~fLGTGsa~Ps~~Rn~Ss~ll~~~~~~~iLlDcGegt-----~-~qL---~r~~g~~~~~~~l~~i~~IfISH~ 559 (861)
....+|+||=.|- +.|++|+. ++..+|+|+|.+. . ..+ .+..| + ++|+|+|||.
T Consensus 498 ~~~~~v~~lDVGq--------G~a~li~~-~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~G-------i-~lD~lilSH~ 560 (755)
T PRK11539 498 EYEWRVDMLDVGH--------GLAVVIER-NGKAILYDTGNAWPTGDSAQQVIIPWLRWHG-------L-TPEGIILSHE 560 (755)
T ss_pred CCcEEEEEEEccC--------ceEEEEEE-CCEEEEEeCCCCCCCCcchHHHHHHHHHHcC-------C-CcCEEEeCCC
Confidence 3468999998776 36788986 7889999999641 1 111 12233 3 4999999999
Q ss_pred chhhhccHHHHHHH
Q 002976 560 HADHHAGLARILAL 573 (861)
Q Consensus 560 H~DH~~GL~~ll~~ 573 (861)
|.||++|+..+++.
T Consensus 561 d~DH~GGl~~Ll~~ 574 (755)
T PRK11539 561 HLDHRGGLASLLHA 574 (755)
T ss_pred CcccCCCHHHHHHh
Confidence 99999999999764
No 70
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=97.86 E-value=1.8e-05 Score=87.01 Aligned_cols=88 Identities=16% Similarity=0.229 Sum_probs=61.9
Q ss_pred eEEEEEeeCCCCCCCCcEEEEEeCCcEEEEEcChhHHH-------HHHHcCCCcCCCCEEEECcCCcCccCcHHHHHHHH
Q 002976 44 SYVQILGTGMDTQDTSPSVLLFFDNQRFIFNAGEGLQR-------FCTEHKIKLSKVDHIFLSRVCSETAGGLPGLLLTL 116 (861)
Q Consensus 44 ~~l~~LGtgs~~~~~~~slll~~~~~~yLfD~GeGtqr-------~l~~~~i~~~ki~~IFiTH~H~DHi~GLpgll~t~ 116 (861)
.++++||.-... ..+|++|.+...++|+|||-.... .|.--.+.+..+++|.|||.|.||+|=||.|...
T Consensus 181 vRvt~LGg~~EV--GRSa~lv~T~eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G~lP~LfkY- 257 (637)
T COG1782 181 VRVTALGGFREV--GRSALLVSTPESRVLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLDHCGFLPLLFKY- 257 (637)
T ss_pred EEEEeeccchhc--cceeEEEecCCceEEEeccccCCCCccccCcccccccccccccceEEEeecccccccchhhhhhc-
Confidence 788888865333 246999999999999999964321 1111123344699999999999999999987743
Q ss_pred hccCCCCCcEEEEcCccHHHHHHH
Q 002976 117 AGIGDEGLSVNVWGPSDLKYLVDA 140 (861)
Q Consensus 117 ~~~~~~~~~l~IyGP~gl~~~l~~ 140 (861)
...| + ||+.+.+.+++-.
T Consensus 258 gy~G----P--VY~T~PTRDlm~L 275 (637)
T COG1782 258 GYDG----P--VYCTPPTRDLMVL 275 (637)
T ss_pred CCCC----C--eeeCCCcHHHHHH
Confidence 3322 4 8888877765443
No 71
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=97.81 E-value=0.00018 Score=79.68 Aligned_cols=119 Identities=16% Similarity=0.120 Sum_probs=70.0
Q ss_pred CeeEEEEEeeCCCCCCCCcEEEEEe-CCcEEEEEc--ChhH--------------HHHHHHcC-----------C---Cc
Q 002976 42 TLSYVQILGTGMDTQDTSPSVLLFF-DNQRFIFNA--GEGL--------------QRFCTEHK-----------I---KL 90 (861)
Q Consensus 42 ~~~~l~~LGtgs~~~~~~~slll~~-~~~~yLfD~--GeGt--------------qr~l~~~~-----------i---~~ 90 (861)
+.+.++.||+. +++|+. ++..+|+|. |.|. .+.+...+ + .+
T Consensus 36 ~~~~~~wlG~a--------~~li~~~~g~~ILiD~~~~~g~~~~~~~~~~~~~~~~~~~G~~~~~P~lr~~p~~idp~~i 107 (355)
T PRK11709 36 GTFAMWWLGCT--------GIWLKTEGGTNVCVDLWCGTGKQTHGNPLMKRGHQMARMAGVRKLQPNLRTQPFVLDPFAI 107 (355)
T ss_pred CcEEEEEecce--------EEEEEcCCCcEEEEeecCCCCCccccccccccccchhhhccccccCCCCCCCCcccCHHHC
Confidence 55889999964 689987 588899994 4332 11111000 0 23
Q ss_pred CCCCEEEECcCCcCccCcHHHHHHHHhccCCCCCcEEEEcCccHHHHHHHHHhhcccCceeeeeecCCCCCCCCcCCCCc
Q 002976 91 SKVDHIFLSRVCSETAGGLPGLLLTLAGIGDEGLSVNVWGPSDLKYLVDAMKSFIPHAAMVHTHCFGPAPSSDASLPDSA 170 (861)
Q Consensus 91 ~ki~~IFiTH~H~DHi~GLpgll~t~~~~~~~~~~l~IyGP~gl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (861)
.++++|+|||.|.||+ +++.+.......+ ..+.++||.+....+... . +... ....
T Consensus 108 ~~IDaVLiTH~H~DHl-D~~tl~~l~~~~~---~~~~~v~p~~~~~~~~~~-G-vp~~---rv~~--------------- 163 (355)
T PRK11709 108 REIDAVLATHDHSDHI-DVNVAAAVLQNCA---DHVKFIGPQACVDLWIGW-G-VPKE---RCIV--------------- 163 (355)
T ss_pred CCCCEEEECCCccccc-ChHHHHHHHhhcC---CCcEEEEcHHHHHHHHhc-C-CCcc---eEEE---------------
Confidence 5799999999999998 4544442222111 146699999876554321 0 0000 0111
Q ss_pred cCCCceeEeeCCcEEEEEEEcCCC
Q 002976 171 KSANHIILVDNELAKISAILLKPS 194 (861)
Q Consensus 171 ~~~~~~~~~~d~~i~V~~~~l~h~ 194 (861)
...+..++.++++|++++..|.
T Consensus 164 --v~~Ge~i~ig~v~It~lpa~h~ 185 (355)
T PRK11709 164 --VKPGDVVKVKDIKIHALDSFDR 185 (355)
T ss_pred --ecCCCcEEECCEEEEEEecccc
Confidence 1233445567899999988663
No 72
>PRK14866 hypothetical protein; Provisional
Probab=97.80 E-value=1.5e-05 Score=88.99 Aligned_cols=53 Identities=25% Similarity=0.403 Sum_probs=49.0
Q ss_pred CccCCCCHHHHHHcCCCCChhhhhhcCCCcEEeCCCceeecCCCccCCCCCCCEE
Q 002976 216 EITGKFDPKKAVALGLKPGPKYRELQSGKSVKSDTLDIMVHPSDVLGPSLPGPLV 270 (861)
Q Consensus 216 ~~~gkf~~~ka~~lGv~~g~~~~~L~~G~~V~l~dg~~~v~p~~v~~~~~~g~~~ 270 (861)
.+++|||++||+++|||+||.|++||+|++|++ ||+ +|+|+||++++.++.++
T Consensus 393 ~~~~kfd~eKa~~lGIp~Gp~~~kLk~G~dV~l-dGr-iI~pedV~~~~~k~~k~ 445 (451)
T PRK14866 393 IRKERFDPELARKLGVPEGPAFGKLAAGQPVEV-DGE-TITPEMVHRETTKRIHL 445 (451)
T ss_pred ecCCCcCHHHHHHcCCCCchHHHHhhCCCCEEE-CCE-EEcHHHccCCCCCCeec
Confidence 356799999999999999999999999999999 887 59999999999999876
No 73
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=97.76 E-value=0.00032 Score=75.04 Aligned_cols=79 Identities=27% Similarity=0.415 Sum_probs=60.1
Q ss_pred cEEEEEecCCCCCCCCCCccEEEEEEeCCceEEEeCCc--ch---HHHHHHHhCccchhhhhccccEEEEeccchhhhcc
Q 002976 492 LEIVLLGTGSSQPSKYRNVSSIYVNLFSKGSLLLDCGE--GT---LGQLKRRYGVEGADSAVRKLRCIWISHIHADHHAG 566 (861)
Q Consensus 492 ~~i~fLGTGsa~Ps~~Rn~Ss~ll~~~~~~~iLlDcGe--gt---~~qL~r~~g~~~~~~~l~~i~~IfISH~H~DH~~G 566 (861)
.++.+|=+|.+ .+++++. ++..+|+|.|. +. ..-|+ ..|+ ++||.+++||.|.||++|
T Consensus 44 ~~~~~lDvGqg--------~a~li~~-~~~~~l~dtg~~~~~~~iip~Lk-~~GV-------~~iD~lIlTH~d~DHiGg 106 (293)
T COG2333 44 WKVHMLDVGQG--------LATLIRS-EGKTILYDTGNSMGQDVIIPYLK-SLGV-------RKLDQLILTHPDADHIGG 106 (293)
T ss_pred ceEEEEEcCCC--------eEEEEee-CCceEEeecCcccCceeehhhHh-HcCC-------ccccEEEeccCCccccCC
Confidence 68999988884 5788887 66699999998 32 22233 3554 899999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCeEEEeCchH
Q 002976 567 LARILALRRDLLKGVPHEPLLVVGPGPL 594 (861)
Q Consensus 567 L~~ll~~~~~~~~g~~~~pl~I~~p~~~ 594 (861)
+..++... .-+.+.++.+...
T Consensus 107 ~~~vl~~~-------~v~~~~i~~~~~~ 127 (293)
T COG2333 107 LDEVLKTI-------KVPELWIYAGSDS 127 (293)
T ss_pred HHHHHhhC-------CCCcEEEeCCCCc
Confidence 99998753 2366888877653
No 74
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=0.00012 Score=83.52 Aligned_cols=90 Identities=20% Similarity=0.258 Sum_probs=62.9
Q ss_pred eEEEEEeeCCCCCCCCcEEEEEeCCcEEEEEcChhHHHHHHHcCCC--cCCCCEEEECcCCcCccCcHHHHHHHHhccCC
Q 002976 44 SYVQILGTGMDTQDTSPSVLLFFDNQRFIFNAGEGLQRFCTEHKIK--LSKVDHIFLSRVCSETAGGLPGLLLTLAGIGD 121 (861)
Q Consensus 44 ~~l~~LGtgs~~~~~~~slll~~~~~~yLfD~GeGtqr~l~~~~i~--~~ki~~IFiTH~H~DHi~GLpgll~t~~~~~~ 121 (861)
|.+.++|.+..+ ..+|++|.+++.++|+|||.--...-.+..+. ..+++++||||.|.||++|||.+.....
T Consensus 1 ~~~~~~g~~~ev--g~s~~~l~~~~~~il~D~G~~~~~~~~~~p~~~~~~~vDavllTHaHlDH~g~lp~l~~~~~---- 74 (427)
T COG1236 1 MTLRFLGAAREV--GRSCVLLETGGTRILLDCGLFPGDPSPERPLLPPFPKVDAVLLTHAHLDHIGALPYLVRNGF---- 74 (427)
T ss_pred CceecccccCCc--CcEEEEEEECCceEEEECCCCcCcCCccCCCCCCCCCcCEEEeccCchhhhcccHHHHHhcc----
Confidence 467888876433 45799999999999999997432110111111 1158999999999999999999886431
Q ss_pred CCCcEEEEcCccHHHHHHHHH
Q 002976 122 EGLSVNVWGPSDLKYLVDAMK 142 (861)
Q Consensus 122 ~~~~l~IyGP~gl~~~l~~~~ 142 (861)
.-.||.-+.+..+...+.
T Consensus 75 ---~~~v~aT~~T~~l~~~~l 92 (427)
T COG1236 75 ---EGPVYATPPTAALLKVLL 92 (427)
T ss_pred ---CCceeeccCHHHHHHHHH
Confidence 123888888877766543
No 75
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=97.66 E-value=9.8e-05 Score=59.48 Aligned_cols=50 Identities=22% Similarity=0.412 Sum_probs=42.8
Q ss_pred ccEEEEEEeCCceEEE-eCCcchHHHHHHHhCccchhhhhccccEEEEeccc-hhhhcc
Q 002976 510 VSSIYVNLFSKGSLLL-DCGEGTLGQLKRRYGVEGADSAVRKLRCIWISHIH-ADHHAG 566 (861)
Q Consensus 510 ~Ss~ll~~~~~~~iLl-DcGegt~~qL~r~~g~~~~~~~l~~i~~IfISH~H-~DH~~G 566 (861)
.+|++|.. ++..+|| +||||+++-+.. .+. .+.+++.||+|+.+ .|+++|
T Consensus 12 ~p~l~l~~-d~~rYlFGn~gEGtQR~~~e-~~i-----kl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 12 GPSLLLFF-DSRRYLFGNCGEGTQRACNE-HKI-----KLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred CCEEEEEe-CCceEEeccCCcHHHHHHHH-cCC-----CccccceEEECCCCcccccCC
Confidence 37999988 6799999 999999887776 454 47899999999999 998876
No 76
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=97.62 E-value=0.00017 Score=87.30 Aligned_cols=76 Identities=20% Similarity=0.306 Sum_probs=60.6
Q ss_pred eeEEEEEeeCCCCCCCCcEEEEEeCCcEEEEEcChh----------HHHHHHHcCCCcCCCCEEEECcCCcCccCcHHHH
Q 002976 43 LSYVQILGTGMDTQDTSPSVLLFFDNQRFIFNAGEG----------LQRFCTEHKIKLSKVDHIFLSRVCSETAGGLPGL 112 (861)
Q Consensus 43 ~~~l~~LGtgs~~~~~~~slll~~~~~~yLfD~GeG----------tqr~l~~~~i~~~ki~~IFiTH~H~DHi~GLpgl 112 (861)
..+++|+-.| .+.|++|+.+++.+|+|+|+. +...+.+.|++ ++.+++||.|.||++|++.+
T Consensus 439 ~~~v~~lDVG-----qGdaili~~~~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~---ID~lilTH~d~DHiGGl~~l 510 (662)
T TIGR00361 439 SWQVDMLDVG-----QGLAMFIGANGKGILYDTGEPWREGSLGEKVIIPFLTAKGIK---LEALILSHADQDHIGGAEII 510 (662)
T ss_pred CEEEEEEecC-----CceEEEEEECCeEEEEeCCCCCCCCCccHHHHHHHHHHcCCC---cCEEEECCCchhhhCcHHHH
Confidence 5789999887 456999999899999999975 34467777774 99999999999999999988
Q ss_pred HHHHhccCCCCCcEEEEcCcc
Q 002976 113 LLTLAGIGDEGLSVNVWGPSD 133 (861)
Q Consensus 113 l~t~~~~~~~~~~l~IyGP~g 133 (861)
+..+. ...|+.|.+
T Consensus 511 l~~~~-------v~~i~~~~~ 524 (662)
T TIGR00361 511 LKHHP-------VKRLVIPKG 524 (662)
T ss_pred HHhCC-------ccEEEeccc
Confidence 75421 134787765
No 77
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=97.60 E-value=7.9e-05 Score=77.73 Aligned_cols=76 Identities=21% Similarity=0.332 Sum_probs=55.3
Q ss_pred eeEEEEEeeCCCCCCCCcEEEEEeCCcEEEEEcCh--hHH--HHH------HHcCCCcCCCCEEEECcCCcCccCcHHHH
Q 002976 43 LSYVQILGTGMDTQDTSPSVLLFFDNQRFIFNAGE--GLQ--RFC------TEHKIKLSKVDHIFLSRVCSETAGGLPGL 112 (861)
Q Consensus 43 ~~~l~~LGtgs~~~~~~~slll~~~~~~yLfD~Ge--Gtq--r~l------~~~~i~~~ki~~IFiTH~H~DHi~GLpgl 112 (861)
.++++.||.|.+.. .+|++|..+++.++||||- |.+ |++ .+.|---.-|+.|.|||+|.||+|.||.|
T Consensus 3 ~i~v~pLGAGQdvG--rSCilvsi~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyf 80 (501)
T KOG1136|consen 3 EIKVTPLGAGQDVG--RSCILVSIGGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYF 80 (501)
T ss_pred cceEEeccCCcccC--ceEEEEEECCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccch
Confidence 37899999987553 3599999999999999995 432 111 11121113478999999999999999998
Q ss_pred HHHHhccC
Q 002976 113 LLTLAGIG 120 (861)
Q Consensus 113 l~t~~~~~ 120 (861)
--.....|
T Consensus 81 sEv~GY~G 88 (501)
T KOG1136|consen 81 SEVVGYDG 88 (501)
T ss_pred HhhhCCCC
Confidence 76655544
No 78
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=97.56 E-value=0.00018 Score=76.36 Aligned_cols=62 Identities=23% Similarity=0.397 Sum_probs=44.7
Q ss_pred EEEEe-CCcEEEEEcChhH--HHHHHHcCCCcCCCCEEEECcCCcCccCcHHHHHHHHhccCCCCCcEEEEcCcc
Q 002976 62 VLLFF-DNQRFIFNAGEGL--QRFCTEHKIKLSKVDHIFLSRVCSETAGGLPGLLLTLAGIGDEGLSVNVWGPSD 133 (861)
Q Consensus 62 lll~~-~~~~yLfD~GeGt--qr~l~~~~i~~~ki~~IFiTH~H~DHi~GLpgll~t~~~~~~~~~~l~IyGP~g 133 (861)
.++.. ++..+|||+|++- ...+.+.+++ +++|++||.|+||++|+..+..... .+.||||..
T Consensus 15 ~li~~~~~~~ilIDpg~~~~vl~~l~~~g~~---l~~IllTH~H~DHigG~~~l~~~~~-------~~~V~~~~~ 79 (251)
T PRK10241 15 WVLNDEAGRCLIVDPGEAEPVLNAIAENNWQ---PEAIFLTHHHHDHVGGVKELVEKFP-------QIVVYGPQE 79 (251)
T ss_pred EEEEcCCCcEEEECCCChHHHHHHHHHcCCc---cCEEEeCCCCchhhccHHHHHHHCC-------CCEEEeccc
Confidence 44433 4578999999863 3455666654 6899999999999999998875421 256999864
No 79
>PLN02398 hydroxyacylglutathione hydrolase
Probab=97.52 E-value=0.00071 Score=73.89 Aligned_cols=63 Identities=14% Similarity=0.119 Sum_probs=45.1
Q ss_pred cEEEEEeC--CcEEEEEcChh--HHHHHHHcCCCcCCCCEEEECcCCcCccCcHHHHHHHHhccCCCCCcEEEEcCcc
Q 002976 60 PSVLLFFD--NQRFIFNAGEG--LQRFCTEHKIKLSKVDHIFLSRVCSETAGGLPGLLLTLAGIGDEGLSVNVWGPSD 133 (861)
Q Consensus 60 ~slll~~~--~~~yLfD~GeG--tqr~l~~~~i~~~ki~~IFiTH~H~DHi~GLpgll~t~~~~~~~~~~l~IyGP~g 133 (861)
-+++|..+ +..+++|.|+. ....+.+.+. ++++|++||.|+||++|+..|.... .+.||||..
T Consensus 88 y~Yli~d~~t~~~~vVDP~~a~~vl~~l~~~g~---~L~~ILlTH~H~DH~GG~~~L~~~~--------ga~V~g~~~ 154 (329)
T PLN02398 88 YAYLLHDEDTGTVGVVDPSEAVPVIDALSRKNR---NLTYILNTHHHYDHTGGNLELKARY--------GAKVIGSAV 154 (329)
T ss_pred EEEEEEECCCCEEEEEcCCCHHHHHHHHHhcCC---CceEEEECCCCchhhCCHHHHHHhc--------CCEEEEehH
Confidence 46666543 46788998864 3444555553 5899999999999999999886432 255999864
No 80
>PLN02469 hydroxyacylglutathione hydrolase
Probab=97.42 E-value=0.00042 Score=73.65 Aligned_cols=62 Identities=16% Similarity=0.279 Sum_probs=44.5
Q ss_pred EEEEEeC--CcEEEEEcChh--HHHHHHHcCCCcCCCCEEEECcCCcCccCcHHHHHHHHhccCCCCCcEEEEcCc
Q 002976 61 SVLLFFD--NQRFIFNAGEG--LQRFCTEHKIKLSKVDHIFLSRVCSETAGGLPGLLLTLAGIGDEGLSVNVWGPS 132 (861)
Q Consensus 61 slll~~~--~~~yLfD~GeG--tqr~l~~~~i~~~ki~~IFiTH~H~DHi~GLpgll~t~~~~~~~~~~l~IyGP~ 132 (861)
|++|..+ +..+|||.|+. +...+.+.++ +|++|++||.|+||++|+..|..... .+.|||+.
T Consensus 14 ~Yli~d~~~~~~vlIDp~~~~~il~~l~~~g~---~l~~Il~TH~H~DH~gG~~~l~~~~~-------~~~V~~~~ 79 (258)
T PLN02469 14 AYLIIDESTKDAAVVDPVDPEKVLQAAHEHGA---KIKLVLTTHHHWDHAGGNEKIKKLVP-------GIKVYGGS 79 (258)
T ss_pred EEEEEeCCCCeEEEECCCChHHHHHHHHHcCC---cccEEEecCCCCccccCHHHHHHHCC-------CCEEEEec
Confidence 6777654 37899999853 3334445443 58999999999999999998764321 25589875
No 81
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=97.37 E-value=0.0012 Score=72.49 Aligned_cols=78 Identities=15% Similarity=0.251 Sum_probs=58.3
Q ss_pred cEEEEEEeCCceEEEeCCcc-hHHHHHHHhCccchhhhhccccEEEEeccchhhhccHHHHHHHHHHhhcCCCCCCeEEE
Q 002976 511 SSIYVNLFSKGSLLLDCGEG-TLGQLKRRYGVEGADSAVRKLRCIWISHIHADHHAGLARILALRRDLLKGVPHEPLLVV 589 (861)
Q Consensus 511 Ss~ll~~~~~~~iLlDcGeg-t~~qL~r~~g~~~~~~~l~~i~~IfISH~H~DH~~GL~~ll~~~~~~~~g~~~~pl~I~ 589 (861)
.|+||. ++..+|||.+.. +..++.....- .-.+++||+|+++|.-.||.+.|+.+++.. +...|+
T Consensus 37 NSYLI~--~~k~aLID~~~~~~~~~~l~~l~~---~id~k~iDYIi~~H~ePDhsg~l~~ll~~~---------p~a~ii 102 (388)
T COG0426 37 NSYLIV--GDKTALIDTVGEKFFDEYLENLSK---YIDPKEIDYIIVNHTEPDHSGSLPELLELA---------PNAKII 102 (388)
T ss_pred eeEEEe--CCcEEEECCCCcchHHHHHHHHHh---hcChhcCeEEEECCCCcchhhhHHHHHHhC---------CCCEEE
Confidence 578886 788999998654 44444432110 112578999999999999999999998652 467899
Q ss_pred eCchHHHHHHHHH
Q 002976 590 GPGPLKRYLDAYE 602 (861)
Q Consensus 590 ~p~~~~~~L~~~~ 602 (861)
|++.-.++|+.+.
T Consensus 103 ~s~~~~~~L~~~~ 115 (388)
T COG0426 103 CSKLAARFLKGFY 115 (388)
T ss_pred eeHHHHHHHHHhc
Confidence 9999888888773
No 82
>PRK11539 ComEC family competence protein; Provisional
Probab=97.32 E-value=0.00074 Score=82.85 Aligned_cols=77 Identities=19% Similarity=0.311 Sum_probs=59.0
Q ss_pred CCeeEEEEEeeCCCCCCCCcEEEEEeCCcEEEEEcChh----------HHHHHHHcCCCcCCCCEEEECcCCcCccCcHH
Q 002976 41 NTLSYVQILGTGMDTQDTSPSVLLFFDNQRFIFNAGEG----------LQRFCTEHKIKLSKVDHIFLSRVCSETAGGLP 110 (861)
Q Consensus 41 ~~~~~l~~LGtgs~~~~~~~slll~~~~~~yLfD~GeG----------tqr~l~~~~i~~~ki~~IFiTH~H~DHi~GLp 110 (861)
....+++++-.| .+.|++++.+++.+|+|+|.+ ....+...|+ +++.|++||.|.||++|++
T Consensus 498 ~~~~~v~~lDVG-----qG~a~li~~~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi---~lD~lilSH~d~DH~GGl~ 569 (755)
T PRK11539 498 EYEWRVDMLDVG-----HGLAVVIERNGKAILYDTGNAWPTGDSAQQVIIPWLRWHGL---TPEGIILSHEHLDHRGGLA 569 (755)
T ss_pred CCcEEEEEEEcc-----CceEEEEEECCEEEEEeCCCCCCCCcchHHHHHHHHHHcCC---CcCEEEeCCCCcccCCCHH
Confidence 344789999887 566899999999999999963 1234666776 3999999999999999999
Q ss_pred HHHHHHhccCCCCCcEEEEcCc
Q 002976 111 GLLLTLAGIGDEGLSVNVWGPS 132 (861)
Q Consensus 111 gll~t~~~~~~~~~~l~IyGP~ 132 (861)
.++..+. ...||.|.
T Consensus 570 ~Ll~~~~-------~~~i~~~~ 584 (755)
T PRK11539 570 SLLHAWP-------MAWIRSPL 584 (755)
T ss_pred HHHHhCC-------cceeeccC
Confidence 9875431 23477764
No 83
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=97.25 E-value=0.0011 Score=69.07 Aligned_cols=38 Identities=29% Similarity=0.351 Sum_probs=29.9
Q ss_pred hhccccEEEEeccchhhhccHHHHHHHHHHhhcCCCCCCeEEEeCc
Q 002976 547 AVRKLRCIWISHIHADHHAGLARILALRRDLLKGVPHEPLLVVGPG 592 (861)
Q Consensus 547 ~l~~i~~IfISH~H~DH~~GL~~ll~~~~~~~~g~~~~pl~I~~p~ 592 (861)
.-.+|.+|+.||.|.||.+|+..|.... ...+.+|+..
T Consensus 48 ~~~~l~~Il~THhH~DHsGGn~~i~~~~--------~~~~~v~g~~ 85 (265)
T KOG0813|consen 48 ENRRLTAILTTHHHYDHSGGNEDIKREI--------PYDIKVIGGA 85 (265)
T ss_pred ccCceeEEEeccccccccCcHHHHHhhc--------cCCcEEecCC
Confidence 3478999999999999999999996542 1357777764
No 84
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=97.07 E-value=0.0011 Score=76.96 Aligned_cols=74 Identities=15% Similarity=0.345 Sum_probs=51.9
Q ss_pred CCcEEEEEeCCcEEEEEcChh-HH-HHHHH--cCCCcCCCCEEEECcCCcCccCcHHHHHHHHhccCCCCCcEEEEcCcc
Q 002976 58 TSPSVLLFFDNQRFIFNAGEG-LQ-RFCTE--HKIKLSKVDHIFLSRVCSETAGGLPGLLLTLAGIGDEGLSVNVWGPSD 133 (861)
Q Consensus 58 ~~~slll~~~~~~yLfD~GeG-tq-r~l~~--~~i~~~ki~~IFiTH~H~DHi~GLpgll~t~~~~~~~~~~l~IyGP~g 133 (861)
+.+|++|. ++..+|||+|.. .. ..+.+ ..+.+.+|+.|++||.|.||++|++.|+... . ...||+++.
T Consensus 34 t~NsYLI~-~~~~vLIDtg~~~~~~~~l~~l~~~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~-----p--~a~V~~s~~ 105 (479)
T PRK05452 34 SYNSYLIR-EEKNVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQI-----P--DTPIYCTAN 105 (479)
T ss_pred EEEEEEEE-CCCEEEEeCCCcccHHHHHHHHHhcCCHhhCCEEEeCCCCcchhchHHHHHHHC-----C--CCEEEECHH
Confidence 45788887 568899999853 22 22211 2345678999999999999999999877431 1 356999877
Q ss_pred HHHHHH
Q 002976 134 LKYLVD 139 (861)
Q Consensus 134 l~~~l~ 139 (861)
....+.
T Consensus 106 ~~~~l~ 111 (479)
T PRK05452 106 AIDSIN 111 (479)
T ss_pred HHHHHH
Confidence 665543
No 85
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=97.05 E-value=0.0019 Score=73.87 Aligned_cols=83 Identities=17% Similarity=0.247 Sum_probs=58.8
Q ss_pred EEEEecCCCCCCCCCCccEEEEEEeCCceEEEeCCcchH--HHHHHHhCccchhhhhccccEEEEeccchhhhccHHHHH
Q 002976 494 IVLLGTGSSQPSKYRNVSSIYVNLFSKGSLLLDCGEGTL--GQLKRRYGVEGADSAVRKLRCIWISHIHADHHAGLARIL 571 (861)
Q Consensus 494 i~fLGTGsa~Ps~~Rn~Ss~ll~~~~~~~iLlDcGegt~--~qL~r~~g~~~~~~~l~~i~~IfISH~H~DH~~GL~~ll 571 (861)
-+++|.+... +-|++|++ ++..||||||-.-. .|+.. .....+..||+|+|||.-.=|++|||+.+
T Consensus 5 ~~~~g~~de~------~~cyllqi-D~~~iLiDcGwd~~f~~~~i~-----~l~~~i~~iDaILLShpd~~hlGaLpY~~ 72 (764)
T KOG1135|consen 5 TTLCGATDEG------PLCYLLQI-DGVRILIDCGWDESFDMSMIK-----ELKPVIPTIDAILLSHPDILHLGALPYAV 72 (764)
T ss_pred EeeccccCCC------cceEEEEE-cCeEEEEeCCCcchhccchhh-----hhhcccccccEEEecCCChHHhccchhhH
Confidence 3456655543 46899999 88999999996532 22222 23345689999999999999999999997
Q ss_pred HHHHHhhcCCCCCCeEEEeCchHHH
Q 002976 572 ALRRDLLKGVPHEPLLVVGPGPLKR 596 (861)
Q Consensus 572 ~~~~~~~~g~~~~pl~I~~p~~~~~ 596 (861)
... |. + .+||+.-.+..
T Consensus 73 ~k~-----gl--~-~~VYAT~PV~~ 89 (764)
T KOG1135|consen 73 GKL-----GL--N-APVYATLPVIK 89 (764)
T ss_pred hhC-----Cc--c-ceEEEecchhh
Confidence 653 21 2 67888766543
No 86
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=96.90 E-value=0.0037 Score=67.05 Aligned_cols=80 Identities=20% Similarity=0.394 Sum_probs=61.7
Q ss_pred eEEEEEeeCCCCCCCCcEEEEEeCCcEEEEEcCh--hHH---HHHHHcCCCcCCCCEEEECcCCcCccCcHHHHHHHHhc
Q 002976 44 SYVQILGTGMDTQDTSPSVLLFFDNQRFIFNAGE--GLQ---RFCTEHKIKLSKVDHIFLSRVCSETAGGLPGLLLTLAG 118 (861)
Q Consensus 44 ~~l~~LGtgs~~~~~~~slll~~~~~~yLfD~Ge--Gtq---r~l~~~~i~~~ki~~IFiTH~H~DHi~GLpgll~t~~~ 118 (861)
.++.++=+| .+-+++++.++.+.++|.|. |.+ ..|.+.|++ +|+.+.+||.|.||+||+..++.++..
T Consensus 44 ~~~~~lDvG-----qg~a~li~~~~~~~l~dtg~~~~~~~iip~Lk~~GV~--~iD~lIlTH~d~DHiGg~~~vl~~~~v 116 (293)
T COG2333 44 WKVHMLDVG-----QGLATLIRSEGKTILYDTGNSMGQDVIIPYLKSLGVR--KLDQLILTHPDADHIGGLDEVLKTIKV 116 (293)
T ss_pred ceEEEEEcC-----CCeEEEEeeCCceEEeecCcccCceeehhhHhHcCCc--cccEEEeccCCccccCCHHHHHhhCCC
Confidence 466777666 34578999999999999888 433 457777765 899999999999999999999976543
Q ss_pred cCCCCCcEEEEcCccHH
Q 002976 119 IGDEGLSVNVWGPSDLK 135 (861)
Q Consensus 119 ~~~~~~~l~IyGP~gl~ 135 (861)
..+.++.+..-.
T Consensus 117 -----~~~~i~~~~~~~ 128 (293)
T COG2333 117 -----PELWIYAGSDST 128 (293)
T ss_pred -----CcEEEeCCCCcc
Confidence 257777776543
No 87
>PLN02962 hydroxyacylglutathione hydrolase
Probab=96.88 E-value=0.0023 Score=67.58 Aligned_cols=68 Identities=13% Similarity=0.051 Sum_probs=45.7
Q ss_pred CCeeEEEEEeeCCCCCCCCcEEEEEe----CCcEEEEEcChh----HHHHHHHcCCCcCCCCEEEECcCCcCccCcHHHH
Q 002976 41 NTLSYVQILGTGMDTQDTSPSVLLFF----DNQRFIFNAGEG----LQRFCTEHKIKLSKVDHIFLSRVCSETAGGLPGL 112 (861)
Q Consensus 41 ~~~~~l~~LGtgs~~~~~~~slll~~----~~~~yLfD~GeG----tqr~l~~~~i~~~ki~~IFiTH~H~DHi~GLpgl 112 (861)
.+.|.++-+=..+ ....|++|.. +++.+|||.|.. ....+.+.++ ++.+|++||.|+||++|+..|
T Consensus 8 ~~~m~~~~~~~~~---~~~~~Yll~d~~~~~~~avlIDP~~~~~~~~l~~l~~~g~---~i~~Il~TH~H~DHigg~~~l 81 (251)
T PLN02962 8 SSKLLFRQLFEKE---SSTYTYLLADVSHPDKPALLIDPVDKTVDRDLSLVKELGL---KLIYAMNTHVHADHVTGTGLL 81 (251)
T ss_pred CCceEEEEeecCC---ceeEEEEEEeCCCCCCEEEEECCCCCcHHHHHHHHHHCCC---eeEEEEcCCCCchhHHHHHHH
Confidence 4456665554332 1345777754 357899999852 2334555554 478999999999999999887
Q ss_pred HH
Q 002976 113 LL 114 (861)
Q Consensus 113 l~ 114 (861)
..
T Consensus 82 ~~ 83 (251)
T PLN02962 82 KT 83 (251)
T ss_pred HH
Confidence 63
No 88
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=96.83 E-value=0.0004 Score=77.25 Aligned_cols=78 Identities=18% Similarity=0.290 Sum_probs=58.2
Q ss_pred CCeeEEEEEeeCCCCCCCCcEEEEEeCCcEEEEEcCh--hHHH---HHHHcCCCcCCCCEEEECcCCcCccCcHHHHHHH
Q 002976 41 NTLSYVQILGTGMDTQDTSPSVLLFFDNQRFIFNAGE--GLQR---FCTEHKIKLSKVDHIFLSRVCSETAGGLPGLLLT 115 (861)
Q Consensus 41 ~~~~~l~~LGtgs~~~~~~~slll~~~~~~yLfD~Ge--Gtqr---~l~~~~i~~~ki~~IFiTH~H~DHi~GLpgll~t 115 (861)
+....++-||.|.... .+|.++.+.|+++++|||- |.+- .=.-.-+++++++..+|||+|.||++-||.++..
T Consensus 11 ~d~l~~~pLGag~EVG--RSC~ile~kGk~iMld~gvhpaysg~aslpf~d~vd~s~id~llIthFhldh~aslp~~~qk 88 (668)
T KOG1137|consen 11 SDQLKFTPLGAGNEVG--RSCHILEYKGKTIMLDCGVHPAYSGMASLPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQK 88 (668)
T ss_pred CCcEEEEECCCCcccC--ceEEEEEecCeEEEeccccCccccccccccchhhcccccccHHHHhhhhhhhcccccceeee
Confidence 4557788899886443 4599999999999999994 3221 1111246778999999999999999999998864
Q ss_pred HhccC
Q 002976 116 LAGIG 120 (861)
Q Consensus 116 ~~~~~ 120 (861)
-...|
T Consensus 89 Tsf~g 93 (668)
T KOG1137|consen 89 TSFIG 93 (668)
T ss_pred ccccc
Confidence 44433
No 89
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=96.82 E-value=0.0061 Score=66.57 Aligned_cols=99 Identities=14% Similarity=0.217 Sum_probs=59.6
Q ss_pred EEEEEeeCCCC-CCCCcEEEEEeC--CcEEEEEcChh---HHHHHHHcCCC------------------------cCCCC
Q 002976 45 YVQILGTGMDT-QDTSPSVLLFFD--NQRFIFNAGEG---LQRFCTEHKIK------------------------LSKVD 94 (861)
Q Consensus 45 ~l~~LGtgs~~-~~~~~slll~~~--~~~yLfD~GeG---tqr~l~~~~i~------------------------~~ki~ 94 (861)
.+..||++++. .++.++.+++.. +..+-.|+|.. +.+...+.... ...|.
T Consensus 2 ~vi~LG~~GG~~e~nls~~L~~~~~~~s~ialDagt~l~gi~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~I~ 81 (335)
T PF02112_consen 2 QVIVLGSGGGPDEGNLSAYLVRSIGSNSFIALDAGTLLSGINKLIQSKYFSTSFDITLPFWGFASSPYANAAYIIRNHIK 81 (335)
T ss_pred eEeecCCCCCCCCCCcceeeeeecCcCceEEecCccHHHHHHHHhhhcccCCcccccCCccccccChHHHHHHHHHHhhh
Confidence 57889988643 356788999863 55666799974 33333222111 02577
Q ss_pred EEEECcCCcCccCcHHHHHHHHhccCCCCCcEEEEcCccHHHHHHHHHhhcccC
Q 002976 95 HIFLSRVCSETAGGLPGLLLTLAGIGDEGLSVNVWGPSDLKYLVDAMKSFIPHA 148 (861)
Q Consensus 95 ~IFiTH~H~DHi~GLpgll~t~~~~~~~~~~l~IyGP~gl~~~l~~~~~~~~~~ 148 (861)
..||||.|.||+.||. +-+..+......+-+|||-+.+ +++++..+|+.
T Consensus 82 ~ylItH~HLDHi~gLv--insp~~~~~~~~~K~i~gl~~t---i~alk~hiFN~ 130 (335)
T PF02112_consen 82 GYLITHPHLDHIAGLV--INSPEDYLPNSSPKTIYGLPST---IEALKNHIFND 130 (335)
T ss_pred eEEecCCchhhHHHHH--hcCcccccccCCCCcEEECHHH---HHHHHHcccCC
Confidence 9999999999999984 4343332210013449987655 44444444443
No 90
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=96.68 E-value=0.0079 Score=62.80 Aligned_cols=109 Identities=9% Similarity=0.028 Sum_probs=62.9
Q ss_pred cEEEEEeCCcEEEEEcC-----hhHHHHHHHcCCCcCCCCEEEECcCCcCccCcHHHHHHHHhccCCCCCcEEEEcCccH
Q 002976 60 PSVLLFFDNQRFIFNAG-----EGLQRFCTEHKIKLSKVDHIFLSRVCSETAGGLPGLLLTLAGIGDEGLSVNVWGPSDL 134 (861)
Q Consensus 60 ~slll~~~~~~yLfD~G-----eGtqr~l~~~~i~~~ki~~IFiTH~H~DHi~GLpgll~t~~~~~~~~~~l~IyGP~gl 134 (861)
-+++|..+..+...+.+ |-..-.+.+.--...++..||.||.||||++|+..+....- ..+.+||..
T Consensus 14 y~YLl~~~~~~~~a~~vDP~~pe~v~~~~~~~~~~~~~l~~Il~THhH~DHsGGn~~i~~~~~------~~~~v~g~~-- 85 (265)
T KOG0813|consen 14 YMYLLGDGDKTIDADLVDPAEPEYVIPSLKKLDDENRRLTAILTTHHHYDHSGGNEDIKREIP------YDIKVIGGA-- 85 (265)
T ss_pred eEEEEecccceeeeeeecCcchHHHHHHHHhhhhccCceeEEEeccccccccCcHHHHHhhcc------CCcEEecCC--
Confidence 35555543444444433 33333333210122358999999999999999998875422 146688863
Q ss_pred HHHHHHHHhhcccCceeeeeecCCCCCCCCcCCCCccCCCceeEeeCCcEEEEEEEcC-CCCCCCCCCCCCCCeeEEEEE
Q 002976 135 KYLVDAMKSFIPHAAMVHTHCFGPAPSSDASLPDSAKSANHIILVDNELAKISAILLK-PSCSDGSPVKPGETSVIYVCE 213 (861)
Q Consensus 135 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~V~~~~l~-h~~~~~~~~~~~~~s~gY~~~ 213 (861)
.+.+..+- ...+.+..+..++.+|+++..+ |+ ...++|.+.
T Consensus 86 ~~r~~~i~----------------------------~~~~~~e~~~~~g~~v~~l~TPgHT----------~~hi~~~~~ 127 (265)
T KOG0813|consen 86 DDRIPGIT----------------------------RGLKDGETVTVGGLEVRCLHTPGHT----------AGHICYYVT 127 (265)
T ss_pred hhcCcccc----------------------------ccCCCCcEEEECCEEEEEEeCCCcc----------CCcEEEEee
Confidence 01110000 0012334566678999988775 54 578999987
Q ss_pred e
Q 002976 214 L 214 (861)
Q Consensus 214 ~ 214 (861)
.
T Consensus 128 ~ 128 (265)
T KOG0813|consen 128 E 128 (265)
T ss_pred c
Confidence 5
No 91
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=96.66 E-value=0.0035 Score=65.81 Aligned_cols=52 Identities=21% Similarity=0.210 Sum_probs=37.2
Q ss_pred cEEEEEeCC-cEEEEEcChhHH---H---HHHHcCCCcCCCCEEEECcCCcCccCcHHHHHH
Q 002976 60 PSVLLFFDN-QRFIFNAGEGLQ---R---FCTEHKIKLSKVDHIFLSRVCSETAGGLPGLLL 114 (861)
Q Consensus 60 ~slll~~~~-~~yLfD~GeGtq---r---~l~~~~i~~~ki~~IFiTH~H~DHi~GLpgll~ 114 (861)
.++++..+. ..+|+|+|-+.. . .+.+.+. +++.|++||.|.||++|+.-+..
T Consensus 26 ~~~~~~~~~~~~~liD~G~~~~~~~~~~~~l~~~~~---~i~~vilTH~H~DH~gg~~~~~~ 84 (252)
T COG0491 26 SVYLLVDGEGGAVLIDTGLGDADAEALLEALAALGL---DVDAILLTHGHFDHIGGAAVLKE 84 (252)
T ss_pred cEEEEEcCCCceEEEeCCCCchHHHHHHHHHHHcCC---ChheeeecCCchhhhccHHHHHh
Confidence 344444444 799999997652 2 2333333 79999999999999999987653
No 92
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=96.03 E-value=0.01 Score=58.37 Aligned_cols=52 Identities=17% Similarity=0.149 Sum_probs=35.2
Q ss_pred EEEEEeeCCCCCCCCcEEEEEeCCcEEEEEcChhHHHHHHHcCCCcCCCCEEEECcCCcCccCc
Q 002976 45 YVQILGTGMDTQDTSPSVLLFFDNQRFIFNAGEGLQRFCTEHKIKLSKVDHIFLSRVCSETAGG 108 (861)
Q Consensus 45 ~l~~LGtgs~~~~~~~slll~~~~~~yLfD~GeGtqr~l~~~~i~~~ki~~IFiTH~H~DHi~G 108 (861)
+|+.||.+ |++++.++.++|+|...+.. .......+++.|||||.|.||+.-
T Consensus 1 ~It~lgha--------~~~ie~~g~~iliDP~~~~~----~~~~~~~~~D~IlisH~H~DH~~~ 52 (163)
T PF13483_consen 1 KITWLGHA--------SFLIETGGKRILIDPWFSSV----GYAPPPPKADAILISHSHPDHFDP 52 (163)
T ss_dssp EEEEEETT--------EEEEEETTEEEEES--TTT------T-TSS-B-SEEEESSSSTTT-CC
T ss_pred CEEEEEee--------EEEEEECCEEEEECCCCCcc----CcccccCCCCEEEECCCccccCCh
Confidence 47888853 89999999999999884310 011124689999999999999876
No 93
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=95.27 E-value=0.036 Score=63.89 Aligned_cols=73 Identities=21% Similarity=0.225 Sum_probs=52.3
Q ss_pred CCCcEEEEEeCCcEEEEEcChh--HHHHHHHc-CCCcCCCCEEEECcCCcCccCcHHHHHHHHhccCCCCCcEEEEcCcc
Q 002976 57 DTSPSVLLFFDNQRFIFNAGEG--LQRFCTEH-KIKLSKVDHIFLSRVCSETAGGLPGLLLTLAGIGDEGLSVNVWGPSD 133 (861)
Q Consensus 57 ~~~~slll~~~~~~yLfD~GeG--tqr~l~~~-~i~~~ki~~IFiTH~H~DHi~GLpgll~t~~~~~~~~~~l~IyGP~g 133 (861)
.+..|.+|++|+-++|+|||-. +-.++.+. .--...|++|+|||...-|+||||..+..... ...||..-.
T Consensus 13 e~~~cyllqiD~~~iLiDcGwd~~f~~~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl------~~~VYAT~P 86 (764)
T KOG1135|consen 13 EGPLCYLLQIDGVRILIDCGWDESFDMSMIKELKPVIPTIDAILLSHPDILHLGALPYAVGKLGL------NAPVYATLP 86 (764)
T ss_pred CCcceEEEEEcCeEEEEeCCCcchhccchhhhhhcccccccEEEecCCChHHhccchhhHhhCCc------cceEEEecc
Confidence 3567999999999999999953 33333332 22345799999999999999999988754432 345777654
Q ss_pred HH
Q 002976 134 LK 135 (861)
Q Consensus 134 l~ 135 (861)
+.
T Consensus 87 V~ 88 (764)
T KOG1135|consen 87 VI 88 (764)
T ss_pred hh
Confidence 43
No 94
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.09 E-value=0.027 Score=62.33 Aligned_cols=70 Identities=21% Similarity=0.359 Sum_probs=48.4
Q ss_pred EEEEeCCceEEEeCCcc--hHHH-HH---HHhCccchhhhhccccEEEEeccchhhhccHHHHHHHHHHhhcCCCCCCeE
Q 002976 514 YVNLFSKGSLLLDCGEG--TLGQ-LK---RRYGVEGADSAVRKLRCIWISHIHADHHAGLARILALRRDLLKGVPHEPLL 587 (861)
Q Consensus 514 ll~~~~~~~iLlDcGeg--t~~q-L~---r~~g~~~~~~~l~~i~~IfISH~H~DH~~GL~~ll~~~~~~~~g~~~~pl~ 587 (861)
+|+- +.++|+||.=.- +... |. +..|. +.|.+|+-||.|.||++|+-.++..-. .....+.
T Consensus 130 fveG-dtg~IViDpL~t~~tA~aAldl~~~~~g~-------rPV~aVIYtHsH~DHfGGVkGiv~ead-----V~sGkV~ 196 (655)
T COG2015 130 FVEG-DTGWIVIDPLVTPETAKAALDLYNQHRGQ-------RPVVAVIYTHSHSDHFGGVKGIVSEAD-----VKSGKVQ 196 (655)
T ss_pred EEcC-CcceEEEcccCCcHHHHHHHHHHHHhcCC-------CCeEEEEeecccccccCCeeeccCHHH-----cccCcee
Confidence 4443 557899996432 2222 21 22332 679999999999999999999987642 2346799
Q ss_pred EEeCchHHH
Q 002976 588 VVGPGPLKR 596 (861)
Q Consensus 588 I~~p~~~~~ 596 (861)
|++|.+..+
T Consensus 197 iiAP~GFme 205 (655)
T COG2015 197 IIAPAGFME 205 (655)
T ss_pred EecchhHHH
Confidence 999998644
No 95
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=94.43 E-value=0.073 Score=54.86 Aligned_cols=51 Identities=12% Similarity=0.319 Sum_probs=32.7
Q ss_pred CCCCEEEECcCCcCccCcHHHHHHHHhccCCCCCcEEEEcCccHHHHHHHHHhhcccC
Q 002976 91 SKVDHIFLSRVCSETAGGLPGLLLTLAGIGDEGLSVNVWGPSDLKYLVDAMKSFIPHA 148 (861)
Q Consensus 91 ~ki~~IFiTH~H~DHi~GLpgll~t~~~~~~~~~~l~IyGP~gl~~~l~~~~~~~~~~ 148 (861)
..|+.-||||.|.|||.||. +-+..+ +.. .+=+|||-+.+ +..++...+++
T Consensus 111 Q~I~~y~ITH~HLDHIsGlV--inSp~~-~~q-kkkTI~gl~~t---IDvL~khvFN~ 161 (356)
T COG5212 111 QSINSYFITHAHLDHISGLV--INSPDD-SKQ-KKKTIYGLADT---IDVLRKHVFNW 161 (356)
T ss_pred hhhhheEeccccccchhcee--ecCccc-ccc-CCceEEechhH---HHHHHHHhhcc
Confidence 35889999999999999983 222222 222 24569986654 55555565544
No 96
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=94.11 E-value=0.35 Score=51.47 Aligned_cols=140 Identities=15% Similarity=0.078 Sum_probs=77.6
Q ss_pred eeEEEEEeeCCCCCCCCcEEEEEeCCcEEEEEcChh---HHHHHH--HcCCCcCCCCEEEECcCCcCccCcHHHHHHHHh
Q 002976 43 LSYVQILGTGMDTQDTSPSVLLFFDNQRFIFNAGEG---LQRFCT--EHKIKLSKVDHIFLSRVCSETAGGLPGLLLTLA 117 (861)
Q Consensus 43 ~~~l~~LGtgs~~~~~~~slll~~~~~~yLfD~GeG---tqr~l~--~~~i~~~ki~~IFiTH~H~DHi~GLpgll~t~~ 117 (861)
.|+|+.+|.. |++|..++.++|+|..-+ ...... ...-.+..++.|+|||-|.||+.-= .++....
T Consensus 6 ~m~itwlGha--------~~lie~~~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~~~-~~~~~~~ 76 (258)
T COG2220 6 DMKITWLGHA--------AFLIETGGKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLDDE-TLIALRT 76 (258)
T ss_pred CceEEEecce--------EEEEEECCEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccCHH-HHHHHhc
Confidence 4899999953 899999999999994422 111100 0011234689999999999998743 3322111
Q ss_pred ccCCCCCcEEEEcCccHHHHHHHHHhhcccCceeeeeecCCCCCCCCcCCCCccCCCceeEeeCCcEEEEEEEcCCCCCC
Q 002976 118 GIGDEGLSVNVWGPSDLKYLVDAMKSFIPHAAMVHTHCFGPAPSSDASLPDSAKSANHIILVDNELAKISAILLKPSCSD 197 (861)
Q Consensus 118 ~~~~~~~~l~IyGP~gl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~V~~~~l~h~~~~ 197 (861)
+ . ...++.|.+....+...- . .-..... .+.+...+.+.++|+.+++.|....
T Consensus 77 --~-~--~~~~~~p~~~~~~~~~~g--~---~~~~~~~-----------------~~~~~~~~~~~~~i~~~~a~h~~~~ 129 (258)
T COG2220 77 --N-K--APVVVVPLGAGDLLIRDG--V---EAERVHE-----------------LGWGDVIELGDLEITAVPAYHVSAR 129 (258)
T ss_pred --C-C--CcEEEeHHHHHHHHHhcC--C---CcceEEe-----------------ecCCceEEecCcEEEEEEeeccccc
Confidence 1 1 245788876543321110 0 0000111 1223344556788888888876422
Q ss_pred CCC---CCCCCCeeEEEEEeCCcc
Q 002976 198 GSP---VKPGETSVIYVCELPEIT 218 (861)
Q Consensus 198 ~~~---~~~~~~s~gY~~~~~~~~ 218 (861)
... ........||+|+..+.+
T Consensus 130 ~~~~~~~~~~~~~~~~vi~~~g~~ 153 (258)
T COG2220 130 HLPGRGIRPTGLWVGYVIETPGGR 153 (258)
T ss_pred ccCCCCccccCCceEEEEEeCCce
Confidence 110 111245678999888755
No 97
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=94.09 E-value=0.11 Score=57.55 Aligned_cols=74 Identities=19% Similarity=0.260 Sum_probs=56.4
Q ss_pred CCcEEEEEeCCcEEEEE-cChhHHHHHHH---cCCCcCCCCEEEECcCCcCccCcHHHHHHHHhccCCCCCcEEEEcCcc
Q 002976 58 TSPSVLLFFDNQRFIFN-AGEGLQRFCTE---HKIKLSKVDHIFLSRVCSETAGGLPGLLLTLAGIGDEGLSVNVWGPSD 133 (861)
Q Consensus 58 ~~~slll~~~~~~yLfD-~GeGtqr~l~~---~~i~~~ki~~IFiTH~H~DHi~GLpgll~t~~~~~~~~~~l~IyGP~g 133 (861)
+.+|+++. +++..||| .|+++...+.+ .-+.+++|++|+++|.-.||.++|+.++.... ...|++..-
T Consensus 35 tyNSYLI~-~~k~aLID~~~~~~~~~~l~~l~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~~p-------~a~ii~s~~ 106 (388)
T COG0426 35 TYNSYLIV-GDKTALIDTVGEKFFDEYLENLSKYIDPKEIDYIIVNHTEPDHSGSLPELLELAP-------NAKIICSKL 106 (388)
T ss_pred eeeeEEEe-CCcEEEECCCCcchHHHHHHHHHhhcChhcCeEEEECCCCcchhhhHHHHHHhCC-------CCEEEeeHH
Confidence 35789998 99999999 66777665543 35778889999999999999999999985421 356888764
Q ss_pred HHHHHH
Q 002976 134 LKYLVD 139 (861)
Q Consensus 134 l~~~l~ 139 (861)
-..++.
T Consensus 107 ~~~~L~ 112 (388)
T COG0426 107 AARFLK 112 (388)
T ss_pred HHHHHH
Confidence 444444
No 98
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=93.94 E-value=0.26 Score=47.54 Aligned_cols=44 Identities=27% Similarity=0.414 Sum_probs=30.8
Q ss_pred CCceEEEeCCcchH---HHHHHHhCccchhhhhccccEEEEeccchhhhccHHHH
Q 002976 519 SKGSLLLDCGEGTL---GQLKRRYGVEGADSAVRKLRCIWISHIHADHHAGLARI 570 (861)
Q Consensus 519 ~~~~iLlDcGegt~---~qL~r~~g~~~~~~~l~~i~~IfISH~H~DH~~GL~~l 570 (861)
.+..++||.=-.+. .||.+.+|. ++.+-+=||.|+||+.|...|
T Consensus 31 ~~~AviIDPV~et~~RD~qlikdLgl--------~LiYa~NTH~HADHiTGtg~L 77 (237)
T KOG0814|consen 31 TGKAVIIDPVLETVSRDAQLIKDLGL--------DLIYALNTHVHADHITGTGLL 77 (237)
T ss_pred CCceEEecchhhcccchHHHHHhcCc--------eeeeeecceeecccccccchH
Confidence 34568888654442 356555664 567778899999999998765
No 99
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=88.12 E-value=1 Score=50.43 Aligned_cols=76 Identities=14% Similarity=0.169 Sum_probs=50.1
Q ss_pred CcEEEEEeCCcEEEEE---cChhHHHHHH--HcCCCcCCCCEEEECcCCcCccCcHHHHHHHHhccCCCCCcEEEEcCcc
Q 002976 59 SPSVLLFFDNQRFIFN---AGEGLQRFCT--EHKIKLSKVDHIFLSRVCSETAGGLPGLLLTLAGIGDEGLSVNVWGPSD 133 (861)
Q Consensus 59 ~~slll~~~~~~yLfD---~GeGtqr~l~--~~~i~~~ki~~IFiTH~H~DHi~GLpgll~t~~~~~~~~~~l~IyGP~g 133 (861)
.+-.+|+-|...++|| ..|-.+..+. .....-..+.+|..||.|.||+||.-|+..- ++.. .-.+.|..|.|
T Consensus 126 sNITfveGdtg~IViDpL~t~~tA~aAldl~~~~~g~rPV~aVIYtHsH~DHfGGVkGiv~e-adV~--sGkV~iiAP~G 202 (655)
T COG2015 126 SNITFVEGDTGWIVIDPLVTPETAKAALDLYNQHRGQRPVVAVIYTHSHSDHFGGVKGIVSE-ADVK--SGKVQIIAPAG 202 (655)
T ss_pred cceEEEcCCcceEEEcccCCcHHHHHHHHHHHHhcCCCCeEEEEeecccccccCCeeeccCH-HHcc--cCceeEecchh
Confidence 3445566667788889 3343333321 1222334589999999999999999999854 3322 22588999999
Q ss_pred HHHH
Q 002976 134 LKYL 137 (861)
Q Consensus 134 l~~~ 137 (861)
..+-
T Consensus 203 Fme~ 206 (655)
T COG2015 203 FMEE 206 (655)
T ss_pred HHHH
Confidence 7654
No 100
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=82.45 E-value=0.76 Score=53.53 Aligned_cols=62 Identities=19% Similarity=0.304 Sum_probs=44.9
Q ss_pred EEEEeeCCCCCCCCcEEEEEeCCcEEEEEcChh---HHHHHHHcCCCcCCCCEEEECcCCcCccCcHHHHHHH
Q 002976 46 VQILGTGMDTQDTSPSVLLFFDNQRFIFNAGEG---LQRFCTEHKIKLSKVDHIFLSRVCSETAGGLPGLLLT 115 (861)
Q Consensus 46 l~~LGtgs~~~~~~~slll~~~~~~yLfD~GeG---tqr~l~~~~i~~~ki~~IFiTH~H~DHi~GLpgll~t 115 (861)
+.|++-| .+.+.++-++|-.+|+|-|.. ...-|.+ .+.++++|+|||...|++.|+-+|+..
T Consensus 40 cYIfpGg-----~gdaALFavnGf~iLv~GgserKS~fwklVr---HldrVdaVLLthpg~dNLpginsllqr 104 (934)
T KOG3592|consen 40 CYIFPGG-----RGDAALFAVNGFNILVNGGSERKSCFWKLVR---HLDRVDAVLLTHPGADNLPGINSLLQR 104 (934)
T ss_pred EEECCCC-----CCcceeEeecceEEeecCCcccccchHHHHH---HHhhhhhhhhcccccCccccchHHHHH
Confidence 5555543 344667778888889887753 2223333 245799999999999999999999865
No 101
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=80.83 E-value=1.8 Score=50.66 Aligned_cols=62 Identities=18% Similarity=0.329 Sum_probs=45.5
Q ss_pred EEEEecCCCCCCCCCCccEEEEEEeCCceEEEeCCcc---hHHHHHHHhCccchhhhhccccEEEEeccchhhhccHHHH
Q 002976 494 IVLLGTGSSQPSKYRNVSSIYVNLFSKGSLLLDCGEG---TLGQLKRRYGVEGADSAVRKLRCIWISHIHADHHAGLARI 570 (861)
Q Consensus 494 i~fLGTGsa~Ps~~Rn~Ss~ll~~~~~~~iLlDcGeg---t~~qL~r~~g~~~~~~~l~~i~~IfISH~H~DH~~GL~~l 570 (861)
+.++|.| ||.+ .|..+ ++-+||+|.|.. .+-.|.| .+.+|++|++||.-+|...||.+|
T Consensus 40 cYIfpGg-------~gda-ALFav-nGf~iLv~GgserKS~fwklVr---------HldrVdaVLLthpg~dNLpginsl 101 (934)
T KOG3592|consen 40 CYIFPGG-------RGDA-ALFAV-NGFNILVNGGSERKSCFWKLVR---------HLDRVDAVLLTHPGADNLPGINSL 101 (934)
T ss_pred EEECCCC-------CCcc-eeEee-cceEEeecCCcccccchHHHHH---------HHhhhhhhhhcccccCccccchHH
Confidence 4566643 4444 46666 677899888865 3334554 367899999999999999999999
Q ss_pred HHH
Q 002976 571 LAL 573 (861)
Q Consensus 571 l~~ 573 (861)
++.
T Consensus 102 lqr 104 (934)
T KOG3592|consen 102 LQR 104 (934)
T ss_pred HHH
Confidence 865
No 102
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=70.15 E-value=3.2 Score=42.84 Aligned_cols=68 Identities=18% Similarity=0.152 Sum_probs=41.9
Q ss_pred eEEEEEeeCCCCCC-CCcEEEEEeCCcEEEEEcChhH----------HH---HHHHc----CCCcCCCCEEEECcCCcCc
Q 002976 44 SYVQILGTGMDTQD-TSPSVLLFFDNQRFIFNAGEGL----------QR---FCTEH----KIKLSKVDHIFLSRVCSET 105 (861)
Q Consensus 44 ~~l~~LGtgs~~~~-~~~slll~~~~~~yLfD~GeGt----------qr---~l~~~----~i~~~ki~~IFiTH~H~DH 105 (861)
|+|..||.-| .+ .+-|.+|.+.+-++|||.|-.. || +|.+. .--..+-+-|-|||.|.||
T Consensus 1 MkV~Pla~eS--LGVRSmAt~vet~dv~ILiDpGVsLaPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDH 78 (304)
T COG2248 1 MKVIPLASES--LGVRSMATFVETKDVGILIDPGVSLAPKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDH 78 (304)
T ss_pred Cceeeccccc--cchhhhhheeecCCeeEEECCccccCccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeecccc
Confidence 4566666543 11 2347889999999999999532 21 11111 1112356789999999999
Q ss_pred cCc-HHHHH
Q 002976 106 AGG-LPGLL 113 (861)
Q Consensus 106 i~G-Lpgll 113 (861)
.-- .+++.
T Consensus 79 htPf~~~~y 87 (304)
T COG2248 79 HTPFFDGIY 87 (304)
T ss_pred CCccccchh
Confidence 876 34443
No 103
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=69.31 E-value=8.6 Score=37.99 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=31.0
Q ss_pred cEEEEEEeCCceEEEeCCcchHHHHHHHhCccchhhhhccccEEEEeccchhhhccHHHHHHHHHHhhcCCCCCCeEEEe
Q 002976 511 SSIYVNLFSKGSLLLDCGEGTLGQLKRRYGVEGADSAVRKLRCIWISHIHADHHAGLARILALRRDLLKGVPHEPLLVVG 590 (861)
Q Consensus 511 Ss~ll~~~~~~~iLlDcGegt~~qL~r~~g~~~~~~~l~~i~~IfISH~H~DH~~GL~~ll~~~~~~~~g~~~~pl~I~~ 590 (861)
.|+++.. ++++||||.-+=+-..... + +.+..+++|+||| .||+-.-..+-.. -...||+
T Consensus 24 ng~~~~~-p~GnilIDP~~ls~~~~~~-l------~a~ggv~~IvLTn--~dHvR~A~~ya~~----------~~a~i~~ 83 (199)
T PF14597_consen 24 NGHAWRR-PEGNILIDPPPLSAHDWKH-L------DALGGVAWIVLTN--RDHVRAAEDYAEQ----------TGAKIYG 83 (199)
T ss_dssp EEEEE---TT--EEES-----HHHHHH-H------HHTT--SEEE-SS--GGG-TTHHHHHHH----------S--EEEE
T ss_pred eeEEEEc-CCCCEEecCccccHHHHHH-H------HhcCCceEEEEeC--ChhHhHHHHHHHH----------hCCeeec
Confidence 5666766 7889999987755333332 1 1246789999995 6998776665332 1246777
Q ss_pred CchH
Q 002976 591 PGPL 594 (861)
Q Consensus 591 p~~~ 594 (861)
|.+-
T Consensus 84 p~~d 87 (199)
T PF14597_consen 84 PAAD 87 (199)
T ss_dssp EGGG
T ss_pred cHHH
Confidence 7653
No 104
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=62.08 E-value=12 Score=42.76 Aligned_cols=84 Identities=14% Similarity=0.077 Sum_probs=50.3
Q ss_pred CCCEEEECcCCcCccCcHHHHHHHHhccCCCCCcEEEEcCccHHHHHHHHHhhcccCceeeeeecCCCCCCCCcCCCCcc
Q 002976 92 KVDHIFLSRVCSETAGGLPGLLLTLAGIGDEGLSVNVWGPSDLKYLVDAMKSFIPHAAMVHTHCFGPAPSSDASLPDSAK 171 (861)
Q Consensus 92 ki~~IFiTH~H~DHi~GLpgll~t~~~~~~~~~~l~IyGP~gl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (861)
...+-|+||+|.||..||-. .+.. +. ||+-+-+...+.....+... . .+..
T Consensus 112 ~~s~yFLsHFHSDHy~GL~~-----sW~~----p~-lYCS~ita~Lv~~~~~v~~~--~--i~~l--------------- 162 (481)
T KOG1361|consen 112 GCSAYFLSHFHSDHYIGLTK-----SWSH----PP-LYCSPITARLVPLKVSVTKQ--S--IQAL--------------- 162 (481)
T ss_pred ccceeeeecccccccccccc-----cccC----Cc-ccccccchhhhhhhcccChh--h--ceee---------------
Confidence 46789999999999999843 2211 11 78877666655544332110 0 0111
Q ss_pred CCCceeEeeCCcEEEEEEEcCCCCCCCCCCCCCCCeeEEEEEeCC
Q 002976 172 SANHIILVDNELAKISAILLKPSCSDGSPVKPGETSVIYVCELPE 216 (861)
Q Consensus 172 ~~~~~~~~~d~~i~V~~~~l~h~~~~~~~~~~~~~s~gY~~~~~~ 216 (861)
+-+..+...++.|+.+..+|.. .++-|.|+...
T Consensus 163 --~l~~~~~i~~~~vt~ldAnHCP----------Ga~mf~F~~~~ 195 (481)
T KOG1361|consen 163 --DLNQPLEIPGIQVTLLDANHCP----------GAVMFLFELSF 195 (481)
T ss_pred --cCCCceeecceEEEEeccccCC----------CceEEEeecCC
Confidence 1112333445999999999985 66777776553
No 105
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=57.45 E-value=14 Score=27.39 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=23.8
Q ss_pred cCCCCHHHHHHHHHHcCCCEEEEeecc
Q 002976 770 KNHSTTKEAIDVGSSAGVYRIILTHFS 796 (861)
Q Consensus 770 ~~HsT~~eA~~va~~~~ak~lvLtHfS 796 (861)
.+|...++..++.+.+++++++|.|=.
T Consensus 15 SgHad~~~L~~~i~~~~p~~vilVHGe 41 (43)
T PF07521_consen 15 SGHADREELLEFIEQLNPRKVILVHGE 41 (43)
T ss_dssp SSS-BHHHHHHHHHHHCSSEEEEESSE
T ss_pred cCCCCHHHHHHHHHhcCCCEEEEecCC
Confidence 579999999999999999999999943
No 106
>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]
Probab=44.32 E-value=1.2e+02 Score=31.54 Aligned_cols=117 Identities=21% Similarity=0.309 Sum_probs=77.3
Q ss_pred CcEEEEeCCCCCChhHHhhcCCCcEEEEeccCCCChHHHHHhcCCCCHHHHHHHHHHcCCCEEEEeeccCCCCCCccccc
Q 002976 728 GWKIVYSGDTRPCPELVEASRGATVLIHEATFEDGMMEEAIAKNHSTTKEAIDVGSSAGVYRIILTHFSQRYPKIPVVDE 807 (861)
Q Consensus 728 G~ki~YsGDT~p~~~l~~~~~~aDlLIhEaTf~d~~~~~a~~~~HsT~~eA~~va~~~~ak~lvLtHfS~Ry~~~~~~~~ 807 (861)
..||+.+.--.|+..+..+++...|++-.|- ....|+.-..+.+++|+.-+..-+|+.|=-..-|..-.+..
T Consensus 82 dPKimvTTSR~PSsrL~~FaKelkLvfPNaq--------r~nRG~~~~~~lv~a~ra~~~Td~iivHEhRG~PdgL~vsh 153 (290)
T KOG2781|consen 82 DPKIMVTTSRDPSSRLKMFAKELKLVFPNAQ--------RLNRGNYVVGELVDAARANGVTDLIIVHEHRGIPDGLVVSH 153 (290)
T ss_pred CCcEEEEeCCCchHHHHHHHHhheEeccChh--------hhcccceeHHHHHHHHHHCCCceEEEEeccCCCCCceEEEe
Confidence 4589999888899999999999999886554 34678999999999999999999999997655554311111
Q ss_pred c-cCCc--eEEeeeCcEEecCCCCCCc-----------------chhHHHHHhhcccCCCCCchhhh
Q 002976 808 T-HMHK--TCIAFDLMSINLADLPILP-----------------KVLPYFKLLFKDEMPVDESDDVV 854 (861)
Q Consensus 808 ~-~~~~--v~~A~D~m~i~l~~~~~~~-----------------~~~~~l~~lf~~~~~~~~~~~~~ 854 (861)
. +++. +.+..=-|+=.+.++..++ ++...|+.||+ .+.++++..|
T Consensus 154 lPfGPTa~Fsl~nvVmRhdip~~G~msE~~phlIfdNf~t~lG~Rv~~iLkhLFP--~pk~ds~Rvv 218 (290)
T KOG2781|consen 154 LPFGPTAFFSLHNVVMRHDIPDIGTMSEQKPHLIFDNFTTKLGKRVKTILKHLFP--VPKDDSKRVV 218 (290)
T ss_pred cCCCCceEeeeeeeeecccccccccccccCceEEeccccchHHHHHHHHHHHhCC--CCcCCcccEE
Confidence 1 1111 1112223333444544444 34458899998 4455555443
No 107
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.03 E-value=28 Score=37.13 Aligned_cols=48 Identities=10% Similarity=0.233 Sum_probs=41.4
Q ss_pred cEEEEEeCCcEEEEEcChhHHHHHHHcCCCcCCCCEEEECcCCcCccCcHH
Q 002976 60 PSVLLFFDNQRFIFNAGEGLQRFCTEHKIKLSKVDHIFLSRVCSETAGGLP 110 (861)
Q Consensus 60 ~slll~~~~~~yLfD~GeGtqr~l~~~~i~~~ki~~IFiTH~H~DHi~GLp 110 (861)
...+++.++..+++|.|-| .|...++.+.+|+.+.+||.|.+|++++-
T Consensus 96 ~~tl~~d~~~v~v~~~gls---~lak~~vt~d~i~~vv~t~~~~~hlgn~~ 143 (302)
T KOG4736|consen 96 QITLVVDGGDVVVVDTGLS---VLAKEGVTLDQIDSVVITHKSPGHLGNNN 143 (302)
T ss_pred ccceeecCCceEEEecCCc---hhhhcCcChhhcceeEEeccCcccccccc
Confidence 4556677788999999888 67788999999999999999999999983
No 108
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=41.00 E-value=55 Score=35.22 Aligned_cols=63 Identities=29% Similarity=0.321 Sum_probs=45.4
Q ss_pred EEeCCCCCChhHHhhcCCCcEEEEeccCCCCh----HHHHHhcCCCCHHHHHHHHHHcCCCEEEEee
Q 002976 732 VYSGDTRPCPELVEASRGATVLIHEATFEDGM----MEEAIAKNHSTTKEAIDVGSSAGVYRIILTH 794 (861)
Q Consensus 732 ~YsGDT~p~~~l~~~~~~aDlLIhEaTf~d~~----~~~a~~~~HsT~~eA~~va~~~~ak~lvLtH 794 (861)
++.||-.-.+.+.++.+++|++||=|...+.. .+......=-.....++.|++.++|++|.|=
T Consensus 49 ~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytS 115 (280)
T PF01073_consen 49 YIQGDITDPESLEEALEGVDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTS 115 (280)
T ss_pred EEEeccccHHHHHHHhcCCceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 88999998889999999999999998754321 1111222222335578888899999998873
No 109
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.31 E-value=27 Score=37.19 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=35.4
Q ss_pred EEEEEEeCCceEEEeCCcchHHHHHHHhCccchhhhhccccEEEEeccchhhhccHH
Q 002976 512 SIYVNLFSKGSLLLDCGEGTLGQLKRRYGVEGADSAVRKLRCIWISHIHADHHAGLA 568 (861)
Q Consensus 512 s~ll~~~~~~~iLlDcGegt~~qL~r~~g~~~~~~~l~~i~~IfISH~H~DH~~GL~ 568 (861)
+.++.. +...+++|.|-+.++ .+|+ .+.+|+.+.|||.|.+|..++-
T Consensus 97 ~tl~~d-~~~v~v~~~gls~la----k~~v-----t~d~i~~vv~t~~~~~hlgn~~ 143 (302)
T KOG4736|consen 97 ITLVVD-GGDVVVVDTGLSVLA----KEGV-----TLDQIDSVVITHKSPGHLGNNN 143 (302)
T ss_pred cceeec-CCceEEEecCCchhh----hcCc-----ChhhcceeEEeccCcccccccc
Confidence 345543 677899999998432 3565 3689999999999999987663
No 110
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=27.34 E-value=48 Score=32.51 Aligned_cols=45 Identities=20% Similarity=0.280 Sum_probs=26.8
Q ss_pred CCcEEEEE-cChhHHH---HHHHcCCCcCCCCEEEECcCCcCccCcHHHHHHH
Q 002976 67 DNQRFIFN-AGEGLQR---FCTEHKIKLSKVDHIFLSRVCSETAGGLPGLLLT 115 (861)
Q Consensus 67 ~~~~yLfD-~GeGtqr---~l~~~~i~~~ki~~IFiTH~H~DHi~GLpgll~t 115 (861)
.++.+||| +=|-..| ...+.+++ +-.-.=||.|.|||-|- |++.+
T Consensus 31 ~~~AviIDPV~et~~RD~qlikdLgl~---LiYa~NTH~HADHiTGt-g~Lkt 79 (237)
T KOG0814|consen 31 TGKAVIIDPVLETVSRDAQLIKDLGLD---LIYALNTHVHADHITGT-GLLKT 79 (237)
T ss_pred CCceEEecchhhcccchHHHHHhcCce---eeeeecceeeccccccc-chHHH
Confidence 34566666 2233222 23445554 45556799999999997 55544
No 111
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=26.66 E-value=1.4e+02 Score=31.55 Aligned_cols=77 Identities=23% Similarity=0.312 Sum_probs=53.0
Q ss_pred eccCCCCceEEEeccccccccCcccCCcEEEEeCCCCCC---hhHHhhcCCCcEEEEeccCCCChHHHHHhcCCCCHHHH
Q 002976 702 VVHCPQAFGFALKAAERINSVGKVIPGWKIVYSGDTRPC---PELVEASRGATVLIHEATFEDGMMEEAIAKNHSTTKEA 778 (861)
Q Consensus 702 v~H~~~a~G~~i~~~~~~~~~~~~~~G~ki~YsGDT~p~---~~l~~~~~~aDlLIhEaTf~d~~~~~a~~~~HsT~~eA 778 (861)
..+|..|-|..+.. .|++-|.--|. ....+.++.+|+||...|-.--. -..+.
T Consensus 146 ~p~C~~Cg~~~lrP--------------~VV~fGE~lp~~~~~~~~~~~~~~d~liviGTSl~V~----------Paa~~ 201 (250)
T COG0846 146 IPRCPKCGGPVLRP--------------DVVWFGEPLPASFLDEALEALKEADLLIVIGTSLKVY----------PAAGL 201 (250)
T ss_pred CCcCccCCCccccC--------------CEEEeCCCCCHHHHHHHHHHhccCCEEEEECcceEEc----------Chhhh
Confidence 45677777765543 59999998887 44566678999999999943211 11223
Q ss_pred HHHHHHcCCCEEEEeeccCCCCCC
Q 002976 779 IDVGSSAGVYRIILTHFSQRYPKI 802 (861)
Q Consensus 779 ~~va~~~~ak~lvLtHfS~Ry~~~ 802 (861)
...+++.+++.+.+.+-..++...
T Consensus 202 p~~~~~~g~~~i~iN~~~~~~~~~ 225 (250)
T COG0846 202 PELAKRRGAKVIEINLEPTRLDPI 225 (250)
T ss_pred hHHHHhcCCEEEEECCCcccCcch
Confidence 337888999999999966666543
No 112
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=25.58 E-value=1.4e+02 Score=35.20 Aligned_cols=68 Identities=25% Similarity=0.295 Sum_probs=57.5
Q ss_pred CcEEEEeCCCCCChhHHhhcCC--CcEEEEeccCC-----CChHHHHHhcCCCCHHHHHHHHHHcCCCEEEEeec
Q 002976 728 GWKIVYSGDTRPCPELVEASRG--ATVLIHEATFE-----DGMMEEAIAKNHSTTKEAIDVGSSAGVYRIILTHF 795 (861)
Q Consensus 728 G~ki~YsGDT~p~~~l~~~~~~--aDlLIhEaTf~-----d~~~~~a~~~~HsT~~eA~~va~~~~ak~lvLtHf 795 (861)
.+-..|.||.+--+.+.++.++ +|+++|=|.+- +....+|..++=.....+++.|.+.+++++|+.--
T Consensus 302 ~~~~~~igdVrD~~~~~~~~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iST 376 (588)
T COG1086 302 LKLRFYIGDVRDRDRVERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLIST 376 (588)
T ss_pred cceEEEecccccHHHHHHHHhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEec
Confidence 4568899999999999999887 99999999854 34456788888888899999999999999988754
No 113
>PLN02214 cinnamoyl-CoA reductase
Probab=25.34 E-value=1.2e+02 Score=33.58 Aligned_cols=62 Identities=21% Similarity=0.242 Sum_probs=39.6
Q ss_pred EEeCCCCCChhHHhhcCCCcEEEEeccCCCChHHHHHhcCCCCHHHHHHHHHHcCCCEEEEe
Q 002976 732 VYSGDTRPCPELVEASRGATVLIHEATFEDGMMEEAIAKNHSTTKEAIDVGSSAGVYRIILT 793 (861)
Q Consensus 732 ~YsGDT~p~~~l~~~~~~aDlLIhEaTf~d~~~~~a~~~~HsT~~eA~~va~~~~ak~lvLt 793 (861)
++.+|..-...+.++.+++|++||=|..............-.....+++.+++.+++++|++
T Consensus 64 ~~~~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~ 125 (342)
T PLN02214 64 LCKADLQDYEALKAAIDGCDGVFHTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVIT 125 (342)
T ss_pred EEecCcCChHHHHHHHhcCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 45688876667777888999999999754322222222222233456777778888877754
No 114
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=24.19 E-value=1.1e+02 Score=33.54 Aligned_cols=65 Identities=22% Similarity=0.209 Sum_probs=43.8
Q ss_pred EEEEeCCCCCChhHHhhcCCCcEEEEeccCCCChHH----HHHhcCCCCHHHHHHHHHHcC-CCEEEEee
Q 002976 730 KIVYSGDTRPCPELVEASRGATVLIHEATFEDGMME----EAIAKNHSTTKEAIDVGSSAG-VYRIILTH 794 (861)
Q Consensus 730 ki~YsGDT~p~~~l~~~~~~aDlLIhEaTf~d~~~~----~a~~~~HsT~~eA~~va~~~~-ak~lvLtH 794 (861)
-..|-+|..-.+.+.++++|||.++|=|+..+-... +....-=--..-+++.+++.+ +|++|+|=
T Consensus 59 l~l~~aDL~d~~sf~~ai~gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TS 128 (327)
T KOG1502|consen 59 LKLFKADLLDEGSFDKAIDGCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTS 128 (327)
T ss_pred ceEEeccccccchHHHHHhCCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEec
Confidence 578889999999999999999999999984332111 111111111233566666666 89999995
No 115
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=21.43 E-value=1.3e+02 Score=30.13 Aligned_cols=64 Identities=9% Similarity=0.037 Sum_probs=33.2
Q ss_pred cEEEEEeCCcEEEEEcChhHHHHHHHcCCCcCCCCEEEECcCCcCccCcHHHHHHHHhccCCCCCcEEEEcCccH
Q 002976 60 PSVLLFFDNQRFIFNAGEGLQRFCTEHKIKLSKVDHIFLSRVCSETAGGLPGLLLTLAGIGDEGLSVNVWGPSDL 134 (861)
Q Consensus 60 ~slll~~~~~~yLfD~GeGtqr~l~~~~i~~~ki~~IFiTH~H~DHi~GLpgll~t~~~~~~~~~~l~IyGP~gl 134 (861)
+|+++..++..+|||..+-.-...... ..+..+..|.||| .||+.----+.... ...||||.+-
T Consensus 24 ng~~~~~p~GnilIDP~~ls~~~~~~l-~a~ggv~~IvLTn--~dHvR~A~~ya~~~--------~a~i~~p~~d 87 (199)
T PF14597_consen 24 NGHAWRRPEGNILIDPPPLSAHDWKHL-DALGGVAWIVLTN--RDHVRAAEDYAEQT--------GAKIYGPAAD 87 (199)
T ss_dssp EEEEE--TT--EEES-----HHHHHHH-HHTT--SEEE-SS--GGG-TTHHHHHHHS----------EEEEEGGG
T ss_pred eeEEEEcCCCCEEecCccccHHHHHHH-HhcCCceEEEEeC--ChhHhHHHHHHHHh--------CCeeeccHHH
Confidence 678888899999999776443322211 1234689999998 89999877665432 3559999753
No 116
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=21.10 E-value=1.7e+02 Score=31.79 Aligned_cols=85 Identities=13% Similarity=0.125 Sum_probs=49.4
Q ss_pred hhhcCCCcEEeCCCceeecCCCccCCCCCCCEEEEEcCCChhHHHHHhhhhccccccccCCCCcccCCceeEEEEeCCCC
Q 002976 238 RELQSGKSVKSDTLDIMVHPSDVLGPSLPGPLVLLVDCPTESHVLELLSAESLNSYYADFSGDPQCAKTVNCIIHLSPVS 317 (861)
Q Consensus 238 ~~L~~G~~V~l~dg~~~v~p~~v~~~~~~g~~~~ilD~p~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~H~~~~~ 317 (861)
..|++|..|.+-|+-..=..+.|. . .. .+|..-|+.|.+.++++++ ...++.|+|++...
T Consensus 19 ~Ll~~G~~vvV~DNL~~g~~~~v~-~-~~-~~f~~gDi~D~~~L~~vf~-----------------~~~idaViHFAa~~ 78 (329)
T COG1087 19 QLLKTGHEVVVLDNLSNGHKIALL-K-LQ-FKFYEGDLLDRALLTAVFE-----------------ENKIDAVVHFAASI 78 (329)
T ss_pred HHHHCCCeEEEEecCCCCCHHHhh-h-cc-CceEEeccccHHHHHHHHH-----------------hcCCCEEEECcccc
Confidence 456688888776652101112221 1 00 4677779999999999875 24579999998654
Q ss_pred CCC-----ChH-----------HHHHHHHcCCCceEEeCCCC
Q 002976 318 VTG-----TSN-----------YQKWMKRFGSAQHIMAGHEM 343 (861)
Q Consensus 318 v~~-----~~~-----------y~~~~~~~~~~~Hi~~~~~~ 343 (861)
.+. --+ ..+-|++++ .++||.++++
T Consensus 79 ~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~g-v~~~vFSStA 119 (329)
T COG1087 79 SVGESVQNPLKYYDNNVVGTLNLIEAMLQTG-VKKFIFSSTA 119 (329)
T ss_pred ccchhhhCHHHHHhhchHhHHHHHHHHHHhC-CCEEEEecch
Confidence 322 112 235566776 3555555443
Done!