BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002977
(861 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UQU|A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose.
pdb|1UQU|B Chain B, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose.
pdb|1UQT|A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-2-Fluoro
Glucose.
pdb|1UQT|B Chain B, Trehalose-6-Phosphate From E. Coli Bound With Udp-2-Fluoro
Glucose
Length = 482
Score = 204 bits (520), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 121/403 (30%), Positives = 204/403 (50%), Gaps = 24/403 (5%)
Query: 144 KFYLGFCKQHLWPLFHYMLPMCPDHGDRFDRVLWQAYVSANKIFADKVMEVINPDDDCVW 203
++Y F LWP FHY L + +F R W Y+ N + ADK++ ++ DDD +W
Sbjct: 75 EYYNQFSNAVLWPAFHYRLDLV-----QFQRPAWDGYLRVNALLADKLLPLLQ-DDDIIW 128
Query: 204 VHDYHLMVLPTFLRKRFNRIKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNCDLIGFHTF 263
+HDYHL+ LRKR ++GFFLH PFP+ EI+ LP D +L L + DL+GF T
Sbjct: 129 IHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTE 188
Query: 264 DYARHFLSCCSRMLGLDYESKRGHIGLDYFGRTVYIKILPVGVHMGRLESVLNLPATATK 323
+ FL C S + + S + H +G+ ++ P+G+ + P K
Sbjct: 189 NDRLAFLDCLSNLTRVTTRSAKSHTA---WGKAFRTEVYPIGIEPKEIAKQAAGP-LPPK 244
Query: 324 IKEIEKQFDGKKLILGIDDMDIFKGISLKLLAMEQLLQQHPGMRGKVVLVQIVNPARGSG 383
+ +++ + + I ++ +D KG+ + LA E LL+++P GK+ QI +RG
Sbjct: 245 LAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDV 304
Query: 384 KDVQEAKKETYLTAKRINEVYGSPNYEPVVLIDRPVPRFEKSAYYAVAECCIVNAVRDGM 443
+ Q+ + + A RIN YG + P+ +++ R + ++ +V +RDGM
Sbjct: 305 QAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGM 364
Query: 444 NLVPYKYIVCRQGTPIMDEALGRERDSPHTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVA 503
NLV +Y+ +D + +LV+S+F G + L+ A+ VNP+D D VA
Sbjct: 365 NLVAKEYVAA--------------QDPANPGVLVLSQFAGAANELTSALIVNPYDRDEVA 410
Query: 504 DAMTLAINMRDSEKQLRHEKHYRYVSTHDVAYWARSFAQDLER 546
A+ A+ M +E+ RH + + +D+ +W F DL++
Sbjct: 411 AALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQ 453
>pdb|2WTX|A Chain A, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|B Chain B, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|C Chain C, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|D Chain D, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
Length = 474
Score = 204 bits (520), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 121/403 (30%), Positives = 204/403 (50%), Gaps = 24/403 (5%)
Query: 144 KFYLGFCKQHLWPLFHYMLPMCPDHGDRFDRVLWQAYVSANKIFADKVMEVINPDDDCVW 203
++Y F LWP FHY L + +F R W Y+ N + ADK++ ++ DDD +W
Sbjct: 75 EYYNQFSNAVLWPAFHYRLDLV-----QFQRPAWDGYLRVNALLADKLLPLLQ-DDDIIW 128
Query: 204 VHDYHLMVLPTFLRKRFNRIKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNCDLIGFHTF 263
+HDYHL+ LRKR ++GFFLH PFP+ EI+ LP D +L L + DL+GF T
Sbjct: 129 IHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTE 188
Query: 264 DYARHFLSCCSRMLGLDYESKRGHIGLDYFGRTVYIKILPVGVHMGRLESVLNLPATATK 323
+ FL C S + + S + H +G+ ++ P+G+ + P K
Sbjct: 189 NDRLAFLDCLSNLTRVTTRSAKSHTA---WGKAFRTEVYPIGIEPKEIAKQAAGP-LPPK 244
Query: 324 IKEIEKQFDGKKLILGIDDMDIFKGISLKLLAMEQLLQQHPGMRGKVVLVQIVNPARGSG 383
+ +++ + + I ++ +D KG+ + LA E LL+++P GK+ QI +RG
Sbjct: 245 LAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDV 304
Query: 384 KDVQEAKKETYLTAKRINEVYGSPNYEPVVLIDRPVPRFEKSAYYAVAECCIVNAVRDGM 443
+ Q+ + + A RIN YG + P+ +++ R + ++ +V +RDGM
Sbjct: 305 QAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGM 364
Query: 444 NLVPYKYIVCRQGTPIMDEALGRERDSPHTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVA 503
NLV +Y+ +D + +LV+S+F G + L+ A+ VNP+D D VA
Sbjct: 365 NLVAKEYVAA--------------QDPANPGVLVLSQFAGAANELTSALIVNPYDRDEVA 410
Query: 504 DAMTLAINMRDSEKQLRHEKHYRYVSTHDVAYWARSFAQDLER 546
A+ A+ M +E+ RH + + +D+ +W F DL++
Sbjct: 411 AALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQ 453
>pdb|1GZ5|A Chain A, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|B Chain B, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|C Chain C, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|D Chain D, Trehalose-6-Phosphate Synthase. Otsa
Length = 456
Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 119/403 (29%), Positives = 202/403 (50%), Gaps = 24/403 (5%)
Query: 144 KFYLGFCKQHLWPLFHYMLPMCPDHGDRFDRVLWQAYVSANKIFADKVMEVINPDDDCVW 203
++Y F LWP FHY L + +F R W Y+ N + ADK++ ++ DDD +W
Sbjct: 74 EYYNQFSNAVLWPAFHYRLDLV-----QFQRPAWDGYLRVNALLADKLLPLLQ-DDDIIW 127
Query: 204 VHDYHLMVLPTFLRKRFNRIKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNCDLIGFHTF 263
+HDYHL+ LRKR ++GFFLH PFP+ EI+ LP D +L L + DL+GF T
Sbjct: 128 IHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTE 187
Query: 264 DYARHFLSCCSRMLGLDYESKRGHIGLDYFGRTVYIKILPVGVHMGRLESVLNLPATATK 323
+ FL C S + + S + H +G+ ++ P+G+ + P K
Sbjct: 188 NDRLAFLDCLSNLTRVTTRSAKSHTA---WGKAFRTEVYPIGIEPKEIAKQAAGP-LPPK 243
Query: 324 IKEIEKQFDGKKLILGIDDMDIFKGISLKLLAMEQLLQQHPGMRGKVVLVQIVNPARGSG 383
+ +++ + + I ++ +D KG+ + LA E LL+++P GK+ QI +RG
Sbjct: 244 LAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDV 303
Query: 384 KDVQEAKKETYLTAKRINEVYGSPNYEPVVLIDRPVPRFEKSAYYAVAECCIVNAVRDGM 443
+ Q+ + + A RIN YG + P+ +++ R + ++ +V +RDG
Sbjct: 304 QAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLXKIFRYSDVGLVTPLRDGX 363
Query: 444 NLVPYKYIVCRQGTPIMDEALGRERDSPHTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVA 503
NLV +Y+ +D + +LV+S+F G + L+ A+ VNP+D D VA
Sbjct: 364 NLVAKEYVAA--------------QDPANPGVLVLSQFAGAANELTSALIVNPYDRDEVA 409
Query: 504 DAMTLAINMRDSEKQLRHEKHYRYVSTHDVAYWARSFAQDLER 546
A+ A+ +E+ RH + + +D+ +W F DL++
Sbjct: 410 AALDRALTXSLAERISRHAEXLDVIVKNDINHWQECFISDLKQ 452
>pdb|3T5T|A Chain A, Vall From Streptomyces Hygroscopicus In Apo Form
pdb|3T5T|B Chain B, Vall From Streptomyces Hygroscopicus In Apo Form
Length = 496
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 85/331 (25%), Positives = 144/331 (43%), Gaps = 40/331 (12%)
Query: 177 WQAYVSANKIFADKVMEVINPDDDCVW-VHDYHLMVLPTFLRKRFNRIKLGFFLHSPFPS 235
W + + FAD +++ D V+ VHDY L+ +P LR++ + F+H P+PS
Sbjct: 127 WADFGRFTRDFADAILKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPS 186
Query: 236 SEIYRTLP--VRDEILRGLLNCDLIGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYF 293
++ +R LP +R IL G+L IGF + R+FL + +L D R + +++
Sbjct: 187 ADYWRILPKEIRTGILHGMLPATTIGFFADRWCRNFLESVADLLP-DARIDREAMTVEWR 245
Query: 294 GRTVYIKILPVGVHMGRLESVLNLPATATKIKE-IEKQFDGKKLILGIDDMDIFKGISLK 352
G ++ +P+G S L L ++ E IE+ DG +L++ D K
Sbjct: 246 GHRTRLRTMPLGY------SPLTLDGRNPQLPEGIEEWADGHRLVVHSGRTDPIKNAERA 299
Query: 353 LLAMEQLLQQHPGMRGKVVLVQIVNPARGSGKDVQEAKKETYLTAKRINEVYGSPNYE-- 410
+ A +L G K ++ +NP R + Y+ R+ N E
Sbjct: 300 VRAF--VLAARGGGLEKTRMLVRMNPNR-----LYVPANADYV--HRVETAVAEANAELG 350
Query: 411 -PVVLIDRPVPRFEKSAYYAVAECCIVNAVRDGMNLVPYKYIVCRQGTPIMDEALGRERD 469
V ID A + A+ I N+ DG NL ++ P+++E R+ D
Sbjct: 351 SDTVRIDNDNDVNHTIACFRRADLLIFNSTVDGQNLSTFE-------APLVNE---RDAD 400
Query: 470 SPHTSMLVVSEFIGCSPSLSGAIR-VNPWDI 499
+++SE G + L R VNP+D+
Sbjct: 401 ------VILSETCGAAEVLGEYCRSVNPFDL 425
>pdb|4F96|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
pdb|4F96|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
pdb|4F97|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Validoxylamine A 7'-Phosphate
pdb|4F97|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Validoxylamine A 7'-Phosphate
pdb|4F9F|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|C Chain C, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|D Chain D, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|E Chain E, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|F Chain F, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|3VDM|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase
Which Catalyzes Non-Glycosidic C-N Coupling In
Validamycin A Biosynthesis
pdb|3VDM|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase
Which Catalyzes Non-Glycosidic C-N Coupling In
Validamycin A Biosynthesis
pdb|3VDN|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
Length = 497
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 85/331 (25%), Positives = 144/331 (43%), Gaps = 40/331 (12%)
Query: 177 WQAYVSANKIFADKVMEVINPDDDCVW-VHDYHLMVLPTFLRKRFNRIKLGFFLHSPFPS 235
W + + FAD +++ D V+ VHDY L+ +P LR++ + F+H P+PS
Sbjct: 128 WADFGRFTRDFADAILKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPS 187
Query: 236 SEIYRTLP--VRDEILRGLLNCDLIGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYF 293
++ +R LP +R IL G+L IGF + R+FL + +L D R + +++
Sbjct: 188 ADYWRILPKEIRTGILHGMLPATTIGFFADRWCRNFLESVADLLP-DARIDREAMTVEWR 246
Query: 294 GRTVYIKILPVGVHMGRLESVLNLPATATKIKE-IEKQFDGKKLILGIDDMDIFKGISLK 352
G ++ +P+G S L L ++ E IE+ DG +L++ D K
Sbjct: 247 GHRTRLRTMPLGY------SPLTLDGRNPQLPEGIEEWADGHRLVVHSGRTDPIKNAERA 300
Query: 353 LLAMEQLLQQHPGMRGKVVLVQIVNPARGSGKDVQEAKKETYLTAKRINEVYGSPNYE-- 410
+ A +L G K ++ +NP R + Y+ R+ N E
Sbjct: 301 VRAF--VLAARGGGLEKTRMLVRMNPNR-----LYVPANADYV--HRVETAVAEANAELG 351
Query: 411 -PVVLIDRPVPRFEKSAYYAVAECCIVNAVRDGMNLVPYKYIVCRQGTPIMDEALGRERD 469
V ID A + A+ I N+ DG NL ++ P+++E R+ D
Sbjct: 352 SDTVRIDNDNDVNHTIACFRRADLLIFNSTVDGQNLSTFE-------APLVNE---RDAD 401
Query: 470 SPHTSMLVVSEFIGCSPSLSGAIR-VNPWDI 499
+++SE G + L R VNP+D+
Sbjct: 402 ------VILSETCGAAEVLGEYCRSVNPFDL 426
>pdb|3T7D|A Chain A, Vall From Streptomyces Hygroscopicus In Complex With
Trehalose
pdb|3T7D|B Chain B, Vall From Streptomyces Hygroscopicus In Complex With
Trehalose
Length = 497
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 86/331 (25%), Positives = 141/331 (42%), Gaps = 40/331 (12%)
Query: 177 WQAYVSANKIFADKVMEVINPDDDCVW-VHDYHLMVLPTFLRKRFNRIKLGFFLHSPFPS 235
W + + FAD +++ D V+ VHDY L+ +P LR++ + F+H P+PS
Sbjct: 128 WADFGRFTRDFADAILKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPS 187
Query: 236 SEIYRTLP--VRDEILRGLLNCDLIGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYF 293
++ +R LP +R IL G L IGF + R+FL + +L D R +++
Sbjct: 188 ADYWRILPKEIRTGILHGXLPATTIGFFADRWCRNFLESVADLLP-DARIDREAXTVEWR 246
Query: 294 GRTVYIKILPVGVHMGRLESVLNLPATATKIKE-IEKQFDGKKLILGIDDMDIFKGISLK 352
G ++ P+G S L L ++ E IE+ DG +L++ D K
Sbjct: 247 GHRTRLRTXPLGY------SPLTLDGRNPQLPEGIEEWADGHRLVVHSGRTDPIKNAERA 300
Query: 353 LLAMEQLLQQHPGMRGKVVLVQIVNPARGSGKDVQEAKKETYLTAKRINEVYGSPNYE-- 410
+ A L + G+ LV+ NP R + Y+ R+ N E
Sbjct: 301 VRAF-VLAARGGGLEKTRXLVR-XNPNR-----LYVPANADYV--HRVETAVAEANAELG 351
Query: 411 -PVVLIDRPVPRFEKSAYYAVAECCIVNAVRDGMNLVPYKYIVCRQGTPIMDEALGRERD 469
V ID A + A+ I N+ DG NL ++ P+++E R+ D
Sbjct: 352 SDTVRIDNDNDVNHTIACFRRADLLIFNSTVDGQNLSTFE-------APLVNE---RDAD 401
Query: 470 SPHTSMLVVSEFIGCSPSLSGAIR-VNPWDI 499
+++SE G + L R VNP+D+
Sbjct: 402 ------VILSETCGAAEVLGEYCRSVNPFDL 426
>pdb|1U02|A Chain A, Crystal Structure Of Trehalose-6-Phosphate Phosphatase
Related Protein
Length = 239
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 105/250 (42%), Gaps = 39/250 (15%)
Query: 594 IFLDYDGTVVPETSIIKSPGPEVISV-LKTLCSDPNNT--VFIVSGRGRSSLSEWLAPCE 650
IFLDYDGT+VP II +P L +L SD +IV+GR +S +L P +
Sbjct: 4 IFLDYDGTLVP---IIXNPEESYADAGLLSLISDLKERFDTYIVTGRSPEEISRFL-PLD 59
Query: 651 MLGIAAEHGYFIRWNKTSEWETNH---LGADLEWKKIVEPVMRSYTEATDGSNIEIKESA 707
+ I HG + N + LG + +I E RS+ G I K A
Sbjct: 60 INXICY-HGACSKINGQIVYNNGSDRFLGV---FDRIYEDT-RSWVSDFPGLRIYRKNLA 114
Query: 708 LVWHHQDADPDFGSCQAKELLDHLESVLANEPAVVKRGQHIVEVKPQGVSKGLVAEKVLV 767
+++H G+ +L +E + G+ I+E++ GV+KG +
Sbjct: 115 VLYHLGLX----GADXKPKLRSRIEEIARIFGVETYYGKXIIELRVPGVNKGSA-----I 165
Query: 768 RMFNGGRPPDFVMCVGDDRSDEDMFESILSTVSGPSLPVPPEIFACTVGRKPSKAKYYLD 827
R G RP + GDD +DE FE+ + VG + AK+++
Sbjct: 166 RSVRGERP---AIIAGDDATDEAAFEA------------NDDALTIKVGEGETHAKFHVA 210
Query: 828 DATDVLKLLQ 837
D + K+L+
Sbjct: 211 DYIEXRKILK 220
>pdb|2W5F|A Chain A, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
With Xylohexaose
pdb|2W5F|B Chain B, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
With Xylohexaose
Length = 540
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 16/110 (14%)
Query: 699 SNIEIKESALVWHHQ-------DADPDFGSCQAKELLDH-LESVLANEPAVVKRGQHIVE 750
+NI ++ LVWH Q D D G+ ++ ++D LES + N A ++R +
Sbjct: 258 NNIAVRGHTLVWHSQTPQWFFKDNFQDNGNWVSQSVMDQRLESYIKNMFAEIQRQYPSLN 317
Query: 751 VKPQGVSKGLVAEKV-LVRMFNGGRPPDF-------VMCVGDDRSDEDMF 792
+ V V++ R + G R P + V GD++ E F
Sbjct: 318 LYAYDVVNAAVSDDANRTRYYGGAREPGYGNGRSPWVQIYGDNKFIEKAF 367
>pdb|2DFV|A Chain A, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus
Horikoshii
pdb|2DFV|B Chain B, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus
Horikoshii
pdb|2DFV|C Chain C, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus
Horikoshii
Length = 347
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 593 AIFLDYDGTVVPETSIIKSPG--PEVISVLKTLCSDPNNTVFIVSGRGRSSLSEWLAPCE 650
+F +Y VVP +I K+P P + L+ + +TV G+S L P
Sbjct: 122 GVFAEY--AVVPAQNIWKNPKSIPPEYATLQEPLGNAVDTVLAGPISGKSVLITGAGPLG 179
Query: 651 MLGIA---AEHGYFIRWNKTSEWE---TNHLGADLEWKKIVEPVMRSYTEATDGSNIEI 703
+LGIA A Y + ++ S++ +GAD E V++ + TDG+ +++
Sbjct: 180 LLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVXDITDGNGVDV 238
>pdb|2D8A|A Chain A, Crystal Structure Of Ph0655 From Pyrococcus Horikoshii Ot3
Length = 348
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 593 AIFLDYDGTVVPETSIIKSPG--PEVISVLKTLCSDPNNTVFIVSGRGRSSLSEWLAPCE 650
+F +Y VVP +I K+P P + L+ + +TV G+S L P
Sbjct: 123 GVFAEY--AVVPAQNIWKNPKSIPPEYATLQEPLGNAVDTVLAGPISGKSVLITGAGPLG 180
Query: 651 MLGIA---AEHGYFIRWNKTSEWE---TNHLGADLEWKKIVEPVMRSYTEATDGSNIEI 703
+LGIA A Y + ++ S++ +GAD E V++ + TDG+ +++
Sbjct: 181 LLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVXDITDGNGVDV 239
>pdb|2WYS|A Chain A, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
With Xylohexaose
pdb|2WYS|B Chain B, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
With Xylohexaose
pdb|2WZE|A Chain A, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D
Xylanas Xylohexaose
pdb|2WZE|B Chain B, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D
Xylanas Xylohexaose
Length = 540
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 16/110 (14%)
Query: 699 SNIEIKESALVWHHQ-------DADPDFGSCQAKELLDH-LESVLANEPAVVKRGQHIVE 750
+NI ++ LVWH Q D D G+ ++ + D LES + N A ++R +
Sbjct: 258 NNIAVRGHTLVWHSQTPQWFFKDNFQDNGNWVSQSVXDQRLESYIKNXFAEIQRQYPSLN 317
Query: 751 VKPQGVSKGLVAEKV-LVRMFNGGRPPDF-------VMCVGDDRSDEDMF 792
+ V V++ R + G R P + V GD++ E F
Sbjct: 318 LYAYDVVNAAVSDDANRTRYYGGAREPGYGNGRSPWVQIYGDNKFIEKAF 367
>pdb|3KZF|A Chain A, Structure Of Giardia Carbamate Kinase
pdb|3KZF|B Chain B, Structure Of Giardia Carbamate Kinase
pdb|3KZF|C Chain C, Structure Of Giardia Carbamate Kinase
pdb|3KZF|D Chain D, Structure Of Giardia Carbamate Kinase
Length = 317
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Query: 749 VEVKPQGVSKGLVAEKVLVRMFNGGRPP----DFVMCVGDDRSDEDMFESILS-TVSGPS 803
+E+ GV K L+ VLV NGG P + V+ D D+D+ S+L+ T++
Sbjct: 173 LEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDY 232
Query: 804 LPVPPEIF-ACTVGRKPSKAKYYLDDATDVLKLLQ-GLATASSSKPRHLADIEVSFESG 860
L + ++ AC +KP + K +++L L + G A S P+ A IE + +G
Sbjct: 233 LMILTDVLNACINYKKPDERKLEEIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQATG 291
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,476,339
Number of Sequences: 62578
Number of extensions: 1148306
Number of successful extensions: 2865
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2836
Number of HSP's gapped (non-prelim): 19
length of query: 861
length of database: 14,973,337
effective HSP length: 107
effective length of query: 754
effective length of database: 8,277,491
effective search space: 6241228214
effective search space used: 6241228214
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)