BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002978
         (861 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha-
           Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
          Length = 507

 Score = 31.2 bits (69), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 12/76 (15%)

Query: 614 DRPAYASIQAILYGPYLLAGHTSGDWDIKTGSAKS-LSDWITPIPASYN---GQLVTFAQ 669
           DRP++AS + +  G  +  GH S  W ++  +A S + ++ T  P S     G +++ A+
Sbjct: 76  DRPSFASFRVVSGGRSMAFGHYSEHWKVQRRAAHSMMRNFFTRQPRSRQVLEGHVLSEAR 135

Query: 670 E--------SGDSAFV 677
           E        S D AF+
Sbjct: 136 ELVALLVRGSADGAFL 151


>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a
 pdb|2QFZ|B Chain B, Crystal Structure Of Human Tbc1 Domain Family Member 22a
          Length = 345

 Score = 30.0 bits (66), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 7/88 (7%)

Query: 211 LSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQ 270
           +S  P+E     EA       Y+ + K+L G+ D YTFA     ++M   M+E   +R+ 
Sbjct: 176 VSGVPAEVLCNIEA-----DTYWCMSKLLDGIQDNYTFA--QPGIQMKVKMLEELVSRID 228

Query: 271 NVITKYSVERHWNSLNEETGGMNDVLYR 298
             + ++  +     L      MN++L R
Sbjct: 229 EQVHRHLDQHEVRYLQFAFRWMNNLLMR 256


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,883,831
Number of Sequences: 62578
Number of extensions: 1145547
Number of successful extensions: 2341
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2339
Number of HSP's gapped (non-prelim): 3
length of query: 861
length of database: 14,973,337
effective HSP length: 107
effective length of query: 754
effective length of database: 8,277,491
effective search space: 6241228214
effective search space used: 6241228214
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)