BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002980
(861 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QJT|A Chain A, Solution Structure Of The Apo Eh1 Domain Of Mouse
Epidermal Growth Factor Receptor Substrate 15, Eps15
Length = 99
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 9 FESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALK 68
+E ++R+ + GR+ +A AF + S LP +L +IW AD + L +QEF+ AL+
Sbjct: 13 YEKYYRQVEAGNTGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALR 72
Query: 69 LVTVAQSKRELTPDIVKAALYGPAATKIPPPQIN 102
LV AQ+ E++ + A +PPP+ +
Sbjct: 73 LVACAQNGLEVSLSSLSLA--------VPPPRFH 98
>pdb|2KGR|A Chain A, Solution Structure Of Protein Itsn1 From Homo Sapiens.
Northeast Structural Genomics Consortium Target Hr5524a
Length = 111
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%)
Query: 408 KYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWXXXXXXXXXXXXXREFCFAL 467
KY ++F D G +TG QAR + M LP+ L +W EF A+
Sbjct: 15 KYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWNLSDIDQDGKLTAEEFILAM 74
Query: 468 YLMERYREGRPLPAVLP 484
+L++ G+PLP VLP
Sbjct: 75 HLIDVAMSGQPLPPVLP 91
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 8 QFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNAL 67
++ F D G ++G +A S+LP+ LA IW +D + L +EF A+
Sbjct: 15 KYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWNLSDIDQDGKLTAEEFILAM 74
Query: 68 KLVTVAQSKRELTP 81
L+ VA S + L P
Sbjct: 75 HLIDVAMSGQPLPP 88
>pdb|2KHN|A Chain A, Nmr Solution Structure Of The Eh 1 Domain From Human
Intersectin-1 Protein. Northeast Structural Genomics
Consortium Target Hr3646e
Length = 121
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%)
Query: 422 GRITGEQARNLFMSWRLPREVLKQVWXXXXXXXXXXXXXREFCFALYLMERYREGRPLPA 481
G ITG+QARN F LP+ VL Q+W EF A+ L++ +G LP+
Sbjct: 47 GFITGDQARNFFFQSGLPQPVLAQIWALADMNNDGRMDQVEFSIAMKLIKLKLQGYQLPS 106
Query: 482 VLP 484
LP
Sbjct: 107 ALP 109
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 22 GRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSKREL 79
G I+G +A FF S LP+ VLAQIW AD N+ + + EF A+KL+ + +L
Sbjct: 47 GFITGDQARNFFFQSGLPQPVLAQIWALADMNNDGRMDQVEFSIAMKLIKLKLQGYQL 104
>pdb|2QPT|A Chain A, Crystal Structure Of An Ehd Atpase Involved In Membrane
Remodelling
Length = 550
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 405 DIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWXXXXXXXXXXXXXREFC 464
D KY ++F + DG+++G +A+ + +LP VL ++W EF
Sbjct: 456 DKSKYDEIFYNL-APADGKLSGSKAKTWMVGTKLPNSVLGRIWKLSDVDRDGMLDDEEFA 514
Query: 465 FALYLMERYREGRPLPAVLPRNVM 488
A +L+E EG LP LPR ++
Sbjct: 515 LASHLIEAKLEGHGLPTNLPRRLV 538
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 21 DGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLV 70
DG++SG++A + G+ LP VL +IW +D + L +EF A L+
Sbjct: 471 DGKLSGSKAKTWMVGTKLPNSVLGRIWKLSDVDRDGMLDDEEFALASHLI 520
>pdb|3FIA|A Chain A, Crystal Structure Of The Eh 1 Domain From Human
Intersectin- 1 Protein. Northeast Structural Genomics
Consortium Target Hr3646e
Length = 121
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 33/63 (52%)
Query: 422 GRITGEQARNLFMSWRLPREVLKQVWXXXXXXXXXXXXXREFCFALYLMERYREGRPLPA 481
G ITG+QARN F LP+ VL Q+W EF A L++ +G LP+
Sbjct: 47 GFITGDQARNFFFQSGLPQPVLAQIWALADXNNDGRXDQVEFSIAXKLIKLKLQGYQLPS 106
Query: 482 VLP 484
LP
Sbjct: 107 ALP 109
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%)
Query: 22 GRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSKREL 79
G I+G +A FF S LP+ VLAQIW AD N+ + EF A KL+ + +L
Sbjct: 47 GFITGDQARNFFFQSGLPQPVLAQIWALADXNNDGRXDQVEFSIAXKLIKLKLQGYQL 104
>pdb|1C07|A Chain A, Structure Of The Third Eps15 Homology Domain Of Human
Eps15
Length = 95
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 36/72 (50%)
Query: 401 MKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWXXXXXXXXXXXXX 460
+ P++ KY ++F++ D D DG ++G + R +F+ LP +L +W
Sbjct: 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSK 63
Query: 461 REFCFALYLMER 472
+F A +L+ +
Sbjct: 64 DQFALAFHLISQ 75
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 38/85 (44%)
Query: 8 QFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNAL 67
+++ F + D D DG +SG E F + LP +LA IW D L + +F A
Sbjct: 11 KYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSKDQFALAF 70
Query: 68 KLVTVAQSKRELTPDIVKAALYGPA 92
L++ K P ++ + P+
Sbjct: 71 HLISQKLIKGIDPPHVLTPEMIPPS 95
>pdb|1FI6|A Chain A, Solution Structure Of The Reps1 Eh Domain
Length = 92
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 36/89 (40%)
Query: 400 KMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWXXXXXXXXXXXX 459
K+ Q Y F + D +G I G A+ F +LP L +W
Sbjct: 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALT 61
Query: 460 XREFCFALYLMERYREGRPLPAVLPRNVM 488
EFC A +L+ + G LP LP ++M
Sbjct: 62 LDEFCAAFHLVVARKNGYDLPEKLPESLM 90
Score = 34.3 bits (77), Expect = 0.30, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 31/67 (46%)
Query: 13 FRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTV 72
F+ D +G I G+ A FF S LP L+ IW +D + L EF A LV
Sbjct: 15 FKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLDEFCAAFHLVVA 74
Query: 73 AQSKREL 79
++ +L
Sbjct: 75 RKNGYDL 81
>pdb|1EH2|A Chain A, Structure Of The Second Eps15 Homology Domain Of Human
Eps15, Nmr, 20 Structures
Length = 106
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 397 PWPKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWXXXXXXXXX 456
PW +KP D KY +F + + +G ++G++ + + ++ +LP ++L +VW
Sbjct: 6 PW-AVKPEDKAKYDAIFDSL-SPVNGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDG 63
Query: 457 XXXXREFCFALYLMERYREGRPLPAVLP 484
EF A++L+ E P+P LP
Sbjct: 64 MLDRDEFAVAMFLVYCALEKEPVPMSLP 91
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 21 DGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSKRELT 80
+G +SG + S LP +L ++W +D +H L R EF A+ LV A K E
Sbjct: 28 NGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFAVAMFLVYCALEK-EPV 86
Query: 81 PDIVKAALYGPAATK 95
P + AL P+ K
Sbjct: 87 PMSLPPALVPPSKRK 101
>pdb|1F8H|A Chain A, Structure Of The Second Eps15 Homology Domain Of Human
Eps15 In Complex With Ptgssstnpfr
Length = 95
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 397 PWPKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWXXXXXXXXX 456
PW +KP D KY +F + + +G ++G++ + + ++ +LP ++L +VW
Sbjct: 1 PW-AVKPEDKAKYDAIFDSL-SPVNGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDG 58
Query: 457 XXXXREFCFALYLMERYREGRPLPAVLP 484
EF A++L+ E P+P LP
Sbjct: 59 MLDRDEFAVAMFLVYCALEKEPVPMSLP 86
Score = 34.3 bits (77), Expect = 0.33, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 21 DGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSKRELT 80
+G +SG + S LP +L ++W +D +H L R EF A+ LV A K E
Sbjct: 23 NGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFAVAMFLVYCALEK-EPV 81
Query: 81 PDIVKAALYGPA 92
P + AL P+
Sbjct: 82 PMSLPPALVPPS 93
>pdb|1FF1|A Chain A, Structure Of The Second Eps15 Homology Domain Of Human
Eps15 In Complex With Ptgssstnpfl
Length = 95
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 397 PWPKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWXXXXXXXXX 456
PW +KP D KY +F + + +G ++G++ + + ++ +LP ++L +VW
Sbjct: 1 PW-AVKPEDKAKYDAIFDSL-SPVNGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDG 58
Query: 457 XXXXREFCFALYLMERYREGRPLPAVLP 484
EF A++L+ E P+P LP
Sbjct: 59 MLDRDEFAVAMFLVYCALEKEPVPMSLP 86
Score = 34.3 bits (77), Expect = 0.33, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 21 DGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSKRELT 80
+G +SG + S LP +L ++W +D +H L R EF A+ LV A K E
Sbjct: 23 NGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFAVAMFLVYCALEK-EPV 81
Query: 81 PDIVKAALYGPA 92
P + AL P+
Sbjct: 82 PMSLPPALVPPS 93
>pdb|2JXC|A Chain A, Structure Of The Eps15-Eh2 Stonin2 Complex
Length = 100
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 397 PWPKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWXXXXXXXXX 456
PW +KP D KY +F + + +G ++G++ + + ++ +LP ++L +VW
Sbjct: 6 PW-AVKPEDKAKYDAIFDSL-SPVNGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDG 63
Query: 457 XXXXREFCFALYLMERYREGRPLPAVLP 484
EF A++L+ E P+P LP
Sbjct: 64 MLDRDEFAVAMFLVYCALEKEPVPMSLP 91
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 21 DGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSKRELT 80
+G +SG + S LP +L ++W +D +H L R EF A+ LV A K E
Sbjct: 28 NGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFAVAMFLVYCALEK-EPV 86
Query: 81 PDIVKAALYGPA 92
P + AL P+
Sbjct: 87 PMSLPPALVPPS 98
>pdb|1IQ3|A Chain A, Solution Structure Of The Eps15 Homology Domain Of A Human
Pob1
Length = 110
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
Query: 388 NSTPDNSQVPWPKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVW 447
+S PD PW ++ + Y F + D I+G A+N F +L L +W
Sbjct: 7 SSYPDE---PW-RITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIW 62
Query: 448 XXXXXXXXXXXXXREFCFALYLMERYREGRPLPAVLP 484
EFC A +L+ + G PLP LP
Sbjct: 63 ELSDADCDGALTLPEFCAAFHLIVARKNGYPLPEGLP 99
>pdb|2JQ6|A Chain A, Structure Of Eh-Domain Of Ehd1
Length = 139
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 405 DIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWXXXXXXXXXXXXXREFC 464
D Y ++F + + +G+ITG A+ + +LP VL ++W EF
Sbjct: 49 DKPTYDEIFYTL-SPVNGKITGANAKKEMVKSKLPNTVLGKIWKLADVDKDGLLDDEEFA 107
Query: 465 FALYLMERYREGRPLPAVLP 484
A +L++ EG LPA LP
Sbjct: 108 LANHLIKVKLEGHELPADLP 127
Score = 37.0 bits (84), Expect = 0.052, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 31/63 (49%)
Query: 21 DGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSKRELT 80
+G+I+GA A S LP VL +IW AD + L +EF A L+ V EL
Sbjct: 64 NGKITGANAKKEMVKSKLPNTVLGKIWKLADVDKDGLLDDEEFALANHLIKVKLEGHELP 123
Query: 81 PDI 83
D+
Sbjct: 124 ADL 126
>pdb|2KFF|A Chain A, Structure Of The C-Terminal Domain Of Ehd1 With
Fnyestnpftak
pdb|2KFG|A Chain A, Structure Of The C-Terminal Domain Of Ehd1 In Complex With
Fnyestdpftak
pdb|2KFH|A Chain A, Structure Of The C-Terminal Domain Of Ehd1 With
Fnyestgpftak
pdb|2KSP|A Chain A, Mechanism For The Selective Interaction Of C-Terminal
Eh-Dom Proteins With Specific Npf-Containing Partners
Length = 105
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 405 DIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWXXXXXXXXXXXXXREFC 464
D Y ++F + + +G+ITG A+ + +LP VL ++W EF
Sbjct: 15 DKPTYDEIFYTL-SPVNGKITGANAKKEMVKSKLPNTVLGKIWKLADVDKDGLLDDEEFA 73
Query: 465 FALYLMERYREGRPLPAVLP 484
A +L++ EG LPA LP
Sbjct: 74 LANHLIKVKLEGHELPADLP 93
Score = 36.6 bits (83), Expect = 0.055, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 31/63 (49%)
Query: 21 DGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSKRELT 80
+G+I+GA A S LP VL +IW AD + L +EF A L+ V EL
Sbjct: 30 NGKITGANAKKEMVKSKLPNTVLGKIWKLADVDKDGLLDDEEFALANHLIKVKLEGHELP 89
Query: 81 PDI 83
D+
Sbjct: 90 ADL 92
>pdb|2I18|A Chain A, The Refined Structure Of C-Terminal Domain Of An Ef-Hand
Calcium Binding Protein From Entamoeba Histolytica
Length = 64
Score = 37.0 bits (84), Expect = 0.051, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 12 FFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEF 63
++ D+DGDG+++ E +FF+ + K +A+ M AD N Y+ +EF
Sbjct: 10 LYKLMDVDGDGKLTKEEVTSFFKKHGIEK--VAEQVMKADANGDGYITLEEF 59
>pdb|1JFJ|A Chain A, Nmr Solution Structure Of An Ef-Hand Calcium Binding
Protein From Entamoeba Histolytica
pdb|1JFK|A Chain A, Minimum Energy Representative Structure Of A Calcium Bound
Ef-hand Protein From Entamoeba Histolytica
Length = 134
Score = 37.0 bits (84), Expect = 0.051, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 12 FFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEF 63
++ D+DGDG+++ E +FF+ + K +A+ M AD N Y+ +EF
Sbjct: 80 LYKLMDVDGDGKLTKEEVTSFFKKHGIEK--VAEQVMKADANGDGYITLEEF 129
>pdb|2NXQ|A Chain A, Crystal Structure Of Calcium Binding Protein 1 From
Entamoeba Histolytica: A Novel Arrangement Of Ef Hand
Motifs
pdb|2NXQ|B Chain B, Crystal Structure Of Calcium Binding Protein 1 From
Entamoeba Histolytica: A Novel Arrangement Of Ef Hand
Motifs
pdb|3PX1|A Chain A, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Strontium
pdb|3PX1|B Chain B, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Strontium
pdb|3QJK|A Chain A, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Lead
pdb|3QJK|B Chain B, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Lead
pdb|3ULG|A Chain A, Crystal Structure Of Calcium-Binding Protein-1 From
Entamoeba Histolytica In Complex With Barium
pdb|3ULG|B Chain B, Crystal Structure Of Calcium-Binding Protein-1 From
Entamoeba Histolytica In Complex With Barium
Length = 134
Score = 37.0 bits (84), Expect = 0.051, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 12 FFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEF 63
++ D+DGDG+++ E +FF+ + K +A+ M AD N Y+ +EF
Sbjct: 80 LYKLMDVDGDGKLTKEEVTSFFKKHGIEK--VAEQVMKADANGDGYITLEEF 129
>pdb|2JNX|A Chain A, Nmr Derived Solution Structure Of An Ef-Hand Calcium
Binding Protein From Entamoeba Histolytica
Length = 134
Score = 34.3 bits (77), Expect = 0.33, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 12 FFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEF 63
++ D DGDG+++ E FF+ K V+ QI M AD N Y+ +EF
Sbjct: 80 LYKLMDADGDGKLTKEEVTTFFKKFGYEK-VVDQI-MKADANGDGYITLEEF 129
>pdb|1YX7|A Chain A, Nmr Structure Of Calsensin, Energy Minimized Average
Structure.
pdb|1YX8|A Chain A, Nmr Structure Of Calsensin, 20 Low Energy Structures
Length = 83
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 1 MAGPNQDQFESFFRRADLDGDGRISGAEAVAFF--------QGSNLPKQVLAQIWMHADH 52
MA + + E+ F++ D +GDG ++ E F + K+ A++ AD
Sbjct: 1 MACKVKAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADK 60
Query: 53 NHTSYLGRQEFYNA 66
N + ++EF NA
Sbjct: 61 NSDGKISKEEFLNA 74
>pdb|3L19|A Chain A, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
pdb|3L19|B Chain B, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
Length = 214
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 5 NQDQFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEF 63
++D+ ES F++ D DG+G+IS E + F +L + ++ D N+ + +EF
Sbjct: 141 SKDKLESAFQKFDQDGNGKISVDELASVFGLDHLESKTWKEMISGIDSNNDGDVDFEEF 199
>pdb|2G9B|A Chain A, Nmr Solution Structure Of Ca2+-Loaded Calbindin D28k
pdb|2F33|A Chain A, Nmr Solution Structure Of Ca2+-Loaded Calbindin D28k
Length = 263
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 26 GAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSKR--ELTPDI 83
G+ A + Q S + +IW+H D + + YL +E N ++ + A+ K EL+P++
Sbjct: 1 GSMAESHLQSSLITASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEM 60
>pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
pdb|1TYT|B Chain B, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
Length = 487
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 685 RGGSADGLLQVRADRIQSDLE-ELLKALTERCKKHGIDVKSH 725
RGG D L R D I + EL K LTE+ + +GI+V++H
Sbjct: 213 RGGQVD--LAYRGDMILRGFDSELRKQLTEQLRANGINVRTH 252
>pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
pdb|1TYP|B Chain B, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
Length = 487
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 685 RGGSADGLLQVRADRIQSDLE-ELLKALTERCKKHGIDVKSH 725
RGG D L R D I + EL K LTE+ + +GI+V++H
Sbjct: 213 RGGQVD--LAYRGDMILRGFDSELRKQLTEQLRANGINVRTH 252
>pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|C Chain C, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|D Chain D, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEB|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEB|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEC|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
pdb|1FEC|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
Length = 490
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 685 RGGSADGLLQVRADRIQSDLE-ELLKALTERCKKHGIDVKSH 725
RGG D L R D I + EL K LTE+ + +GI+V++H
Sbjct: 212 RGGQVD--LAYRGDMILRGFDSELRKQLTEQLRANGINVRTH 251
>pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
pdb|2TPR|B Chain B, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
Length = 490
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 685 RGGSADGLLQVRADRIQSDLE-ELLKALTERCKKHGIDVKSH 725
RGG D L R D I + EL K LTE+ + +GI+V++H
Sbjct: 212 RGGQVD--LAYRGDMILRGFDSELRKQLTEQLRANGINVRTH 251
>pdb|2WHX|A Chain A, A Second Conformation Of The Ns3 Protease-Helicase From
Dengue Virus
Length = 618
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 265 PVSSSSQLINNKSKALVPSGNGFASDSVFGGDVFSAITTSPKQG 308
P +S S +IN K K + GNG + S GD SAIT + + G
Sbjct: 132 PGTSGSPIINKKGKVIGLYGNGVVTKS---GDYVSAITQAERIG 172
>pdb|2WZQ|A Chain A, Insertion Mutant E173gp174 Of The Ns3 Protease-Helicase
From Dengue Virus
Length = 619
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 265 PVSSSSQLINNKSKALVPSGNGFASDSVFGGDVFSAITTSPKQG 308
P +S S +IN K K + GNG + S GD SAIT + + G
Sbjct: 132 PGTSGSPIINKKGKVIGLYGNGVVTKS---GDYVSAITQAERIG 172
>pdb|2VBC|A Chain A, Crystal Structure Of The Ns3 Protease-Helicase From Dengue
Virus
Length = 618
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 265 PVSSSSQLINNKSKALVPSGNGFASDSVFGGDVFSAITTSPKQG 308
P +S S +IN K K + GNG + S GD SAIT + + G
Sbjct: 132 PGTSGSPIINKKGKVIGLYGNGVVTKS---GDYVSAITQAERIG 172
>pdb|3DF0|A Chain A, Calcium-Dependent Complex Between M-Calpain And
Calpastatin
pdb|3BOW|A Chain A, Structure Of M-Calpain In Complex With Calpastatin
Length = 714
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 396 VPWPKMKPSDIQKYSKVFMEVDTDRDGRITGEQAR 430
+ W K IQKY K++ E+D DR G + + R
Sbjct: 599 ILWTK-----IQKYQKIYREIDVDRSGTMNSYEMR 628
>pdb|1DF0|A Chain A, Crystal Structure Of M-Calpain
Length = 700
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 396 VPWPKMKPSDIQKYSKVFMEVDTDRDGRITGEQAR 430
+ W K IQKY K++ E+D DR G + + R
Sbjct: 599 ILWTK-----IQKYQKIYREIDVDRSGTMNSYEMR 628
>pdb|1U5I|A Chain A, Crystal Structure Analysis Of Rat M-Calpain Mutant Lys10
Thr
Length = 700
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 396 VPWPKMKPSDIQKYSKVFMEVDTDRDGRITGEQAR 430
+ W K IQKY K++ E+D DR G + + R
Sbjct: 599 ILWTK-----IQKYQKIYREIDVDRSGTMNSYEMR 628
>pdb|1KFX|L Chain L, Crystal Structure Of Human M-Calpain Form I
pdb|1KFU|L Chain L, Crystal Structure Of Human M-Calpain Form Ii
Length = 699
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 396 VPWPKMKPSDIQKYSKVFMEVDTDRDGRITGEQAR 430
+ W K IQKY K++ E+D DR G + + R
Sbjct: 598 ILWTK-----IQKYQKIYREIDVDRSGTMNSYEMR 627
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 5 NQDQFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEF 63
++D+ ES F++ D DG+G+IS E + F +L + ++ D N+ + +EF
Sbjct: 424 SKDKLESAFQKFDQDGNGKISVDELASVFGLDHLESKTWKEMISGIDSNNDGDVDFEEF 482
>pdb|1H4B|A Chain A, Solution Structure Of The Birch Pollen Allergen Bet V 4
Length = 84
Score = 29.6 bits (65), Expect = 6.7, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 10 ESFFRRADLDGDGRISGAEAVAFFQ--GSNLPKQVLAQIWMHADHNHTSYLGRQEFYNAL 67
E F+R D +GDG+IS AE + GS P +V + D + ++ QEF +
Sbjct: 12 ERIFKRFDANGDGKISAAELGEALKTLGSITPDEV-KHMMAEIDTDGDGFISFQEFTD-- 68
Query: 68 KLVTVAQSKRELTPDIVK 85
++ R L D+ K
Sbjct: 69 ----FGRANRGLLKDVAK 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.128 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,666,354
Number of Sequences: 62578
Number of extensions: 1019186
Number of successful extensions: 2246
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 2175
Number of HSP's gapped (non-prelim): 84
length of query: 861
length of database: 14,973,337
effective HSP length: 107
effective length of query: 754
effective length of database: 8,277,491
effective search space: 6241228214
effective search space used: 6241228214
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)