Query 002980
Match_columns 861
No_of_seqs 393 out of 1516
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 14:38:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002980.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002980hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0998 Synaptic vesicle prote 100.0 5E-42 1.1E-46 412.4 30.8 590 4-758 8-613 (847)
2 KOG1029 Endocytic adaptor prot 100.0 3.7E-37 7.9E-42 349.8 36.7 95 396-491 185-279 (1118)
3 PF12763 EF-hand_4: Cytoskelet 99.9 2.6E-24 5.6E-29 200.2 7.5 93 399-492 2-96 (104)
4 KOG1029 Endocytic adaptor prot 99.8 3.4E-18 7.3E-23 196.3 32.9 93 394-488 4-96 (1118)
5 KOG1955 Ral-GTPase effector RA 99.8 1.6E-19 3.4E-24 199.8 16.3 99 391-490 216-314 (737)
6 KOG0998 Synaptic vesicle prote 99.8 1.2E-19 2.6E-24 219.7 13.0 372 391-770 114-600 (847)
7 smart00027 EH Eps15 homology d 99.7 2.5E-16 5.4E-21 143.6 11.3 94 397-491 1-94 (96)
8 PF12763 EF-hand_4: Cytoskelet 99.7 1.1E-16 2.3E-21 149.4 6.8 82 3-85 6-89 (104)
9 PF12761 End3: Actin cytoskele 99.6 2.2E-15 4.7E-20 153.3 12.0 181 459-678 1-195 (195)
10 KOG1954 Endocytosis/signaling 99.4 7.9E-14 1.7E-18 152.1 5.8 98 392-492 431-528 (532)
11 smart00027 EH Eps15 homology d 99.2 3E-11 6.5E-16 110.3 9.0 84 4-87 7-90 (96)
12 cd00052 EH Eps15 homology doma 99.1 6.2E-10 1.3E-14 93.3 8.2 67 9-75 1-67 (67)
13 cd00052 EH Eps15 homology doma 99.0 1.3E-09 2.8E-14 91.3 8.2 67 409-475 1-67 (67)
14 KOG1955 Ral-GTPase effector RA 99.0 4.3E-10 9.4E-15 125.9 4.7 81 4-84 228-308 (737)
15 PF13499 EF-hand_7: EF-hand do 98.8 1E-08 2.3E-13 86.4 6.5 60 8-67 1-66 (66)
16 KOG1954 Endocytosis/signaling 98.8 6E-09 1.3E-13 114.6 5.4 84 3-87 440-523 (532)
17 cd05022 S-100A13 S-100A13: S-1 98.7 6.5E-08 1.4E-12 88.3 8.2 71 6-76 7-82 (89)
18 PF13499 EF-hand_7: EF-hand do 98.7 4.6E-08 9.9E-13 82.6 6.6 60 408-467 1-66 (66)
19 cd05027 S-100B S-100B: S-100B 98.5 5.3E-07 1.1E-11 82.0 9.0 71 6-76 7-86 (88)
20 cd05025 S-100A1 S-100A1: S-100 98.5 6.9E-07 1.5E-11 81.1 8.9 71 6-76 8-87 (92)
21 cd05022 S-100A13 S-100A13: S-1 98.5 6.2E-07 1.3E-11 81.9 8.2 70 405-474 6-80 (89)
22 cd05026 S-100Z S-100Z: S-100Z 98.4 1.1E-06 2.4E-11 80.5 9.0 69 6-74 9-86 (93)
23 cd05031 S-100A10_like S-100A10 98.4 1.5E-06 3.3E-11 79.2 8.9 68 6-73 7-83 (94)
24 cd05029 S-100A6 S-100A6: S-100 98.3 1.7E-06 3.6E-11 78.8 8.2 67 7-73 10-83 (88)
25 cd05023 S-100A11 S-100A11: S-1 98.3 3E-06 6.4E-11 77.3 8.9 70 6-75 8-86 (89)
26 COG5126 FRQ1 Ca2+-binding prot 98.3 2E-06 4.3E-11 86.4 7.8 65 4-68 89-155 (160)
27 cd05027 S-100B S-100B: S-100B 98.3 4.5E-06 9.8E-11 75.9 9.1 67 406-472 7-82 (88)
28 cd00213 S-100 S-100: S-100 dom 98.2 4.9E-06 1.1E-10 74.6 8.6 69 5-73 6-83 (88)
29 PTZ00183 centrin; Provisional 98.2 5.4E-06 1.2E-10 80.2 9.5 71 400-470 10-82 (158)
30 cd00213 S-100 S-100: S-100 dom 98.2 6.9E-06 1.5E-10 73.6 9.5 69 403-471 4-81 (88)
31 cd00252 SPARC_EC SPARC_EC; ext 98.2 5.1E-06 1.1E-10 79.5 8.1 60 6-67 47-106 (116)
32 cd05025 S-100A1 S-100A1: S-100 98.2 6.9E-06 1.5E-10 74.5 8.2 67 407-473 9-84 (92)
33 cd05031 S-100A10_like S-100A10 98.2 6.7E-06 1.5E-10 75.0 8.1 66 406-471 7-81 (94)
34 KOG0027 Calmodulin and related 98.2 8.3E-06 1.8E-10 80.4 9.3 71 5-75 6-78 (151)
35 PTZ00184 calmodulin; Provision 98.1 1.1E-05 2.4E-10 76.9 9.3 71 400-470 4-76 (149)
36 cd05026 S-100Z S-100Z: S-100Z 98.1 1.3E-05 2.9E-10 73.3 9.2 68 406-473 9-85 (93)
37 cd05029 S-100A6 S-100A6: S-100 98.1 1.7E-05 3.7E-10 72.2 9.2 66 407-472 10-82 (88)
38 PTZ00183 centrin; Provisional 98.1 1E-05 2.2E-10 78.3 8.0 66 4-69 14-81 (158)
39 KOG0027 Calmodulin and related 98.1 1.5E-05 3.3E-10 78.5 9.1 75 401-475 2-78 (151)
40 cd05023 S-100A11 S-100A11: S-1 98.1 2.1E-05 4.5E-10 71.8 9.0 69 405-473 7-84 (89)
41 COG5126 FRQ1 Ca2+-binding prot 98.0 9.7E-06 2.1E-10 81.6 7.4 65 404-468 89-155 (160)
42 PRK09039 hypothetical protein; 98.0 0.00028 6.1E-09 79.1 18.5 122 599-723 79-216 (343)
43 cd00051 EFh EF-hand, calcium b 98.0 2.4E-05 5.1E-10 62.4 7.4 59 9-67 2-62 (63)
44 PF13833 EF-hand_8: EF-hand do 98.0 1.2E-05 2.6E-10 65.5 5.7 49 20-68 1-52 (54)
45 cd00252 SPARC_EC SPARC_EC; ext 98.0 2.1E-05 4.6E-10 75.3 8.3 65 401-467 42-106 (116)
46 cd00051 EFh EF-hand, calcium b 98.0 2.1E-05 4.6E-10 62.6 7.0 59 409-467 2-62 (63)
47 KOG0041 Predicted Ca2+-binding 98.0 1.5E-05 3.2E-10 82.1 6.9 76 393-470 87-164 (244)
48 PTZ00184 calmodulin; Provision 98.0 2.5E-05 5.4E-10 74.4 8.0 66 5-70 9-76 (149)
49 KOG0034 Ca2+/calmodulin-depend 97.9 2.8E-05 6E-10 80.3 8.3 65 5-69 102-175 (187)
50 PF08317 Spc7: Spc7 kinetochor 97.9 0.00041 8.9E-09 77.2 17.8 139 588-726 157-300 (325)
51 KOG0041 Predicted Ca2+-binding 97.9 3.1E-05 6.8E-10 79.7 7.1 67 4-70 96-164 (244)
52 PRK11637 AmiB activator; Provi 97.8 0.0012 2.6E-08 75.9 19.4 14 809-822 366-379 (428)
53 PF13833 EF-hand_8: EF-hand do 97.8 5.4E-05 1.2E-09 61.7 5.7 49 420-468 1-52 (54)
54 PRK11637 AmiB activator; Provi 97.7 0.0016 3.4E-08 75.0 19.3 19 691-709 236-254 (428)
55 cd05030 calgranulins Calgranul 97.7 0.00015 3.2E-09 65.9 8.3 68 6-73 7-83 (88)
56 PF09726 Macoilin: Transmembra 97.6 0.0015 3.2E-08 79.5 17.8 50 610-659 462-511 (697)
57 PF09726 Macoilin: Transmembra 97.6 0.0017 3.6E-08 79.0 18.3 127 584-712 471-611 (697)
58 TIGR02169 SMC_prok_A chromosom 97.6 0.0019 4E-08 81.8 19.3 95 587-681 805-899 (1164)
59 PRK09039 hypothetical protein; 97.6 0.0015 3.2E-08 73.4 16.3 66 616-681 117-182 (343)
60 TIGR02169 SMC_prok_A chromosom 97.6 0.0022 4.8E-08 81.1 19.5 25 689-713 435-459 (1164)
61 COG1579 Zn-ribbon protein, pos 97.6 0.0051 1.1E-07 65.9 18.9 131 581-711 25-172 (239)
62 KOG0044 Ca2+ sensor (EF-Hand s 97.6 0.00013 2.7E-09 75.7 6.5 62 6-67 99-173 (193)
63 cd05030 calgranulins Calgranul 97.6 0.00033 7.2E-09 63.5 8.4 67 406-472 7-82 (88)
64 smart00787 Spc7 Spc7 kinetocho 97.5 0.0024 5.2E-08 70.9 16.4 130 583-725 161-294 (312)
65 TIGR02168 SMC_prok_B chromosom 97.5 0.0032 7E-08 79.4 19.4 20 48-70 27-46 (1179)
66 PF07888 CALCOCO1: Calcium bin 97.5 0.0038 8.2E-08 73.4 18.2 82 581-662 151-232 (546)
67 COG1579 Zn-ribbon protein, pos 97.4 0.0052 1.1E-07 65.8 16.7 23 689-711 125-147 (239)
68 KOG0250 DNA repair protein RAD 97.4 0.0026 5.6E-08 78.8 16.1 138 592-730 335-484 (1074)
69 KOG0250 DNA repair protein RAD 97.4 0.0052 1.1E-07 76.2 18.2 130 581-713 662-801 (1074)
70 PF14658 EF-hand_9: EF-hand do 97.4 0.00034 7.3E-09 60.8 5.9 59 11-69 2-64 (66)
71 PF08317 Spc7: Spc7 kinetochor 97.4 0.0052 1.1E-07 68.5 16.9 78 633-710 213-291 (325)
72 cd05024 S-100A10 S-100A10: A s 97.4 0.0011 2.5E-08 61.1 9.3 67 7-74 8-81 (91)
73 COG3883 Uncharacterized protei 97.3 0.0013 2.8E-08 71.1 10.7 79 617-702 33-112 (265)
74 PF07888 CALCOCO1: Calcium bin 97.3 0.011 2.3E-07 69.8 18.6 12 739-750 349-360 (546)
75 COG4372 Uncharacterized protei 97.3 0.013 2.7E-07 65.8 18.0 104 581-684 131-237 (499)
76 PF14658 EF-hand_9: EF-hand do 97.3 0.00055 1.2E-08 59.5 6.1 59 411-469 2-64 (66)
77 KOG0044 Ca2+ sensor (EF-Hand s 97.3 0.0007 1.5E-08 70.3 7.9 74 3-76 60-135 (193)
78 PRK12309 transaldolase/EF-hand 97.3 0.00051 1.1E-08 78.3 7.6 56 6-72 333-388 (391)
79 PHA02562 46 endonuclease subun 97.2 0.0035 7.6E-08 73.8 14.0 29 585-613 218-246 (562)
80 PF04849 HAP1_N: HAP1 N-termin 97.2 0.013 2.7E-07 64.8 16.6 131 582-715 162-303 (306)
81 KOG0377 Protein serine/threoni 97.2 0.00082 1.8E-08 76.0 7.6 69 5-73 545-619 (631)
82 KOG0377 Protein serine/threoni 97.2 0.00086 1.9E-08 75.9 7.6 70 406-475 546-621 (631)
83 PRK02224 chromosome segregatio 97.2 0.017 3.7E-07 72.0 19.7 22 662-683 618-639 (880)
84 PF12718 Tropomyosin_1: Tropom 97.2 0.023 5E-07 56.5 16.7 122 585-713 19-140 (143)
85 PLN02964 phosphatidylserine de 97.1 0.00099 2.1E-08 80.0 8.1 62 8-69 180-243 (644)
86 PF13851 GAS: Growth-arrest sp 97.1 0.035 7.6E-07 58.2 18.6 139 581-723 35-178 (201)
87 PRK03918 chromosome segregatio 97.1 0.018 3.9E-07 71.5 18.8 19 599-617 205-223 (880)
88 KOG0034 Ca2+/calmodulin-depend 97.1 0.0017 3.7E-08 67.2 8.1 64 407-470 104-176 (187)
89 KOG0980 Actin-binding protein 97.1 0.021 4.7E-07 69.5 18.2 84 598-681 383-476 (980)
90 PRK03918 chromosome segregatio 97.1 0.02 4.4E-07 71.1 18.9 60 650-709 666-725 (880)
91 PF00036 EF-hand_1: EF hand; 97.1 0.00052 1.1E-08 50.3 3.0 26 43-68 2-27 (29)
92 PRK02224 chromosome segregatio 97.0 0.016 3.4E-07 72.2 17.8 12 402-413 147-159 (880)
93 KOG0161 Myosin class II heavy 97.0 0.017 3.7E-07 76.4 18.3 109 605-713 898-1010(1930)
94 PF07926 TPR_MLP1_2: TPR/MLP1/ 97.0 0.079 1.7E-06 51.8 18.8 88 581-668 4-91 (132)
95 PF12718 Tropomyosin_1: Tropom 97.0 0.019 4.1E-07 57.1 14.3 49 599-647 12-60 (143)
96 PHA02562 46 endonuclease subun 97.0 0.023 5E-07 66.9 17.7 64 623-686 338-401 (562)
97 KOG0028 Ca2+-binding protein ( 97.0 0.0023 4.9E-08 64.4 7.7 64 5-68 104-169 (172)
98 PF10168 Nup88: Nuclear pore c 97.0 0.037 8E-07 67.9 19.6 71 650-720 639-717 (717)
99 PRK04863 mukB cell division pr 97.0 0.027 6E-07 73.7 19.4 45 641-685 381-425 (1486)
100 PF10186 Atg14: UV radiation r 97.0 0.055 1.2E-06 58.3 18.9 133 589-721 22-160 (302)
101 PF00261 Tropomyosin: Tropomyo 97.0 0.036 7.8E-07 59.2 17.1 61 586-646 77-137 (237)
102 TIGR03007 pepcterm_ChnLen poly 97.0 0.025 5.3E-07 66.1 17.3 57 657-713 317-380 (498)
103 PF04111 APG6: Autophagy prote 96.9 0.0054 1.2E-07 68.2 11.0 120 589-709 11-134 (314)
104 PRK04863 mukB cell division pr 96.9 0.034 7.4E-07 72.9 19.7 72 608-679 355-426 (1486)
105 COG4942 Membrane-bound metallo 96.9 0.061 1.3E-06 61.8 19.3 69 640-708 175-244 (420)
106 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.9 0.042 9E-07 53.7 15.8 48 634-681 36-83 (132)
107 PF15619 Lebercilin: Ciliary p 96.9 0.079 1.7E-06 55.4 18.5 94 581-684 13-109 (194)
108 PF15619 Lebercilin: Ciliary p 96.9 0.059 1.3E-06 56.3 17.6 118 599-716 66-192 (194)
109 PF04156 IncA: IncA protein; 96.9 0.03 6.6E-07 57.3 15.4 22 604-625 91-112 (191)
110 KOG0037 Ca2+-binding protein, 96.9 0.0025 5.3E-08 66.9 7.4 65 6-70 123-189 (221)
111 PF00038 Filament: Intermediat 96.9 0.058 1.2E-06 59.2 18.4 71 596-666 182-253 (312)
112 COG1196 Smc Chromosome segrega 96.9 0.021 4.6E-07 73.6 17.2 77 604-680 379-455 (1163)
113 TIGR01843 type_I_hlyD type I s 96.9 0.049 1.1E-06 61.4 18.3 62 650-713 203-264 (423)
114 KOG0037 Ca2+-binding protein, 96.9 0.0039 8.4E-08 65.5 8.7 68 405-472 122-191 (221)
115 TIGR01843 type_I_hlyD type I s 96.9 0.051 1.1E-06 61.3 18.3 76 635-712 195-270 (423)
116 COG3883 Uncharacterized protei 96.7 0.1 2.2E-06 56.8 18.4 46 585-630 50-95 (265)
117 PF12128 DUF3584: Protein of u 96.7 0.052 1.1E-06 70.3 19.2 137 586-722 613-770 (1201)
118 PF05667 DUF812: Protein of un 96.7 0.076 1.7E-06 63.9 19.1 66 649-714 446-524 (594)
119 KOG0046 Ca2+-binding actin-bun 96.7 0.0041 8.9E-08 71.9 8.1 74 399-473 11-89 (627)
120 TIGR03007 pepcterm_ChnLen poly 96.7 0.03 6.5E-07 65.4 15.6 34 629-662 254-287 (498)
121 PF08614 ATG16: Autophagy prot 96.7 0.01 2.2E-07 61.5 10.1 96 613-711 86-181 (194)
122 PF11559 ADIP: Afadin- and alp 96.7 0.059 1.3E-06 53.5 14.9 80 634-713 71-151 (151)
123 KOG0161 Myosin class II heavy 96.6 0.068 1.5E-06 71.0 19.0 72 591-662 905-976 (1930)
124 PF00036 EF-hand_1: EF hand; 96.6 0.0021 4.5E-08 47.1 3.2 27 9-35 2-28 (29)
125 TIGR00606 rad50 rad50. This fa 96.6 0.058 1.2E-06 70.5 18.2 20 394-413 159-179 (1311)
126 PF13405 EF-hand_6: EF-hand do 96.6 0.0024 5.1E-08 46.9 3.3 26 9-34 2-27 (31)
127 PLN02964 phosphatidylserine de 96.6 0.0069 1.5E-07 73.0 9.1 70 401-470 173-244 (644)
128 smart00787 Spc7 Spc7 kinetocho 96.6 0.097 2.1E-06 58.4 17.4 89 627-719 177-269 (312)
129 PF14662 CCDC155: Coiled-coil 96.6 0.22 4.7E-06 51.8 18.5 97 581-681 23-119 (193)
130 KOG0963 Transcription factor/C 96.6 0.039 8.4E-07 65.4 14.7 120 623-746 243-371 (629)
131 PF10473 CENP-F_leu_zip: Leuci 96.5 0.12 2.6E-06 51.4 16.1 14 657-670 94-107 (140)
132 KOG0996 Structural maintenance 96.5 0.046 1E-06 68.5 15.8 113 599-711 438-565 (1293)
133 KOG4302 Microtubule-associated 96.5 0.058 1.2E-06 65.1 16.3 142 585-726 37-205 (660)
134 PF00038 Filament: Intermediat 96.5 0.086 1.9E-06 57.9 16.7 62 657-718 223-285 (312)
135 PRK12309 transaldolase/EF-hand 96.5 0.0057 1.2E-07 69.9 7.6 56 406-472 333-388 (391)
136 PF12795 MscS_porin: Mechanose 96.5 0.12 2.6E-06 55.2 16.9 112 605-716 82-213 (240)
137 TIGR00606 rad50 rad50. This fa 96.5 0.09 1.9E-06 68.8 18.9 6 50-55 34-39 (1311)
138 KOG0028 Ca2+-binding protein ( 96.4 0.0092 2E-07 60.2 7.6 63 406-468 105-169 (172)
139 PF10481 CENP-F_N: Cenp-F N-te 96.4 0.071 1.5E-06 57.7 14.5 92 587-678 18-109 (307)
140 COG4372 Uncharacterized protei 96.4 0.2 4.2E-06 56.7 18.3 63 592-654 107-169 (499)
141 PF10591 SPARC_Ca_bdg: Secrete 96.4 0.0015 3.2E-08 62.4 1.7 61 5-65 52-112 (113)
142 KOG0933 Structural maintenance 96.4 0.12 2.6E-06 64.0 18.1 117 602-718 816-936 (1174)
143 PF09789 DUF2353: Uncharacteri 96.4 0.061 1.3E-06 60.0 14.5 133 585-719 84-227 (319)
144 KOG0971 Microtubule-associated 96.4 0.1 2.3E-06 63.8 17.1 109 619-733 329-459 (1243)
145 KOG0976 Rho/Rac1-interacting s 96.4 0.11 2.4E-06 62.8 17.1 42 584-625 96-137 (1265)
146 cd05024 S-100A10 S-100A10: A s 96.4 0.022 4.8E-07 52.7 9.2 66 407-473 8-80 (91)
147 KOG0995 Centromere-associated 96.4 0.1 2.3E-06 61.4 16.6 83 599-681 271-363 (581)
148 TIGR01005 eps_transp_fam exopo 96.4 0.19 4.2E-06 61.9 20.0 59 655-713 343-401 (754)
149 PF13202 EF-hand_5: EF hand; P 96.3 0.004 8.6E-08 44.1 2.9 23 10-32 2-24 (25)
150 PF13405 EF-hand_6: EF-hand do 96.2 0.0053 1.2E-07 45.0 3.6 28 408-435 1-28 (31)
151 PF10186 Atg14: UV radiation r 96.2 0.22 4.8E-06 53.7 17.6 69 613-681 61-129 (302)
152 KOG4674 Uncharacterized conser 96.2 0.17 3.7E-06 66.6 19.0 65 653-717 1317-1382(1822)
153 PF10146 zf-C4H2: Zinc finger- 96.2 0.095 2.1E-06 56.1 14.1 47 635-681 38-84 (230)
154 PF10174 Cast: RIM-binding pro 96.2 0.23 5E-06 61.4 19.2 97 585-681 285-388 (775)
155 KOG4360 Uncharacterized coiled 96.2 0.14 3E-06 59.6 15.8 129 585-713 164-300 (596)
156 TIGR03017 EpsF chain length de 96.1 0.17 3.6E-06 58.3 16.7 15 440-454 79-93 (444)
157 PF15070 GOLGA2L5: Putative go 96.1 0.22 4.8E-06 60.2 18.2 122 581-702 23-174 (617)
158 KOG0995 Centromere-associated 96.1 0.26 5.7E-06 58.2 18.0 141 581-721 236-393 (581)
159 COG4942 Membrane-bound metallo 96.1 0.34 7.4E-06 55.9 18.6 15 699-713 214-228 (420)
160 KOG0933 Structural maintenance 96.1 0.22 4.7E-06 62.0 17.8 22 691-712 853-874 (1174)
161 PRK01156 chromosome segregatio 96.1 0.17 3.6E-06 63.5 17.8 24 689-712 424-447 (895)
162 KOG0977 Nuclear envelope prote 96.1 0.18 3.9E-06 59.8 16.8 97 585-681 104-214 (546)
163 KOG0980 Actin-binding protein 96.1 0.25 5.5E-06 60.6 18.1 45 610-654 412-456 (980)
164 KOG0038 Ca2+-binding kinase in 96.0 0.01 2.2E-07 59.1 5.3 57 10-66 111-174 (189)
165 PF12325 TMF_TATA_bd: TATA ele 96.0 0.18 3.9E-06 49.0 13.8 90 581-681 17-106 (120)
166 PRK10929 putative mechanosensi 96.0 0.21 4.5E-06 64.0 18.2 66 660-725 176-246 (1109)
167 KOG0996 Structural maintenance 96.0 0.23 4.9E-06 62.7 17.8 40 603-642 386-425 (1293)
168 KOG0243 Kinesin-like protein [ 96.0 0.2 4.3E-06 62.9 17.3 98 624-721 450-558 (1041)
169 PRK11281 hypothetical protein; 96.0 0.15 3.2E-06 65.4 16.7 114 606-719 126-259 (1113)
170 PF04111 APG6: Autophagy prote 96.0 0.33 7.2E-06 54.2 17.6 145 587-740 43-209 (314)
171 PF13851 GAS: Growth-arrest sp 95.9 0.25 5.4E-06 51.9 15.5 86 598-683 31-119 (201)
172 PF10174 Cast: RIM-binding pro 95.9 0.37 7.9E-06 59.7 19.2 130 586-715 342-492 (775)
173 KOG0976 Rho/Rac1-interacting s 95.9 0.22 4.9E-06 60.3 16.5 102 580-681 85-186 (1265)
174 PF09789 DUF2353: Uncharacteri 95.9 0.19 4.1E-06 56.2 15.1 97 622-718 72-171 (319)
175 KOG0977 Nuclear envelope prote 95.9 0.27 5.8E-06 58.4 17.2 132 580-711 113-265 (546)
176 TIGR03017 EpsF chain length de 95.9 0.33 7.2E-06 55.8 17.9 54 660-713 314-367 (444)
177 PF15070 GOLGA2L5: Putative go 95.9 0.2 4.4E-06 60.6 16.6 16 581-596 88-103 (617)
178 KOG0031 Myosin regulatory ligh 95.9 0.027 5.8E-07 56.6 7.7 62 407-468 101-164 (171)
179 PF09730 BicD: Microtubule-ass 95.9 0.25 5.4E-06 60.5 17.3 140 581-723 35-178 (717)
180 KOG0018 Structural maintenance 95.9 0.12 2.6E-06 64.4 14.6 111 599-722 657-767 (1141)
181 KOG0964 Structural maintenance 95.9 0.38 8.3E-06 59.7 18.5 92 581-672 679-770 (1200)
182 PF13202 EF-hand_5: EF hand; P 95.9 0.0074 1.6E-07 42.7 2.6 25 43-67 1-25 (25)
183 COG1340 Uncharacterized archae 95.8 0.45 9.8E-06 52.5 17.5 104 593-703 164-273 (294)
184 TIGR01005 eps_transp_fam exopo 95.8 0.16 3.4E-06 62.7 15.8 59 663-721 344-405 (754)
185 KOG0946 ER-Golgi vesicle-tethe 95.8 0.21 4.6E-06 60.8 16.0 61 586-646 649-716 (970)
186 PF05701 WEMBL: Weak chloropla 95.8 0.52 1.1E-05 56.1 19.3 59 623-681 296-354 (522)
187 KOG0030 Myosin essential light 95.8 0.026 5.6E-07 55.9 6.9 74 401-476 5-84 (152)
188 PRK04778 septation ring format 95.8 0.27 5.7E-06 59.1 16.8 26 619-644 314-339 (569)
189 PF04849 HAP1_N: HAP1 N-termin 95.7 0.35 7.5E-06 53.8 16.2 124 587-713 160-287 (306)
190 KOG1003 Actin filament-coating 95.7 0.66 1.4E-05 48.4 17.0 101 581-681 5-119 (205)
191 KOG0804 Cytoplasmic Zn-finger 95.7 0.27 5.9E-06 56.6 15.6 64 650-713 375-446 (493)
192 PF14662 CCDC155: Coiled-coil 95.7 0.52 1.1E-05 49.1 16.3 67 625-691 105-171 (193)
193 PF06818 Fez1: Fez1; InterPro 95.7 0.4 8.7E-06 50.4 15.7 131 579-716 16-159 (202)
194 PF07798 DUF1640: Protein of u 95.7 0.37 8E-06 49.4 15.4 41 675-715 117-158 (177)
195 PF12128 DUF3584: Protein of u 95.7 0.47 1E-05 61.8 19.7 18 690-707 773-790 (1201)
196 KOG0971 Microtubule-associated 95.7 0.22 4.9E-06 61.1 15.4 17 738-754 516-532 (1243)
197 PF08614 ATG16: Autophagy prot 95.6 0.18 3.9E-06 52.3 13.0 76 604-679 98-173 (194)
198 PF06008 Laminin_I: Laminin Do 95.6 0.41 8.9E-06 51.8 16.3 55 659-713 148-203 (264)
199 KOG0288 WD40 repeat protein Ti 95.6 0.15 3.2E-06 58.1 13.0 28 653-680 44-71 (459)
200 KOG4673 Transcription factor T 95.6 0.35 7.7E-06 58.0 16.5 71 651-721 496-579 (961)
201 PF11559 ADIP: Afadin- and alp 95.6 0.43 9.3E-06 47.4 15.1 92 606-697 57-149 (151)
202 KOG0994 Extracellular matrix g 95.6 0.5 1.1E-05 59.4 18.3 27 621-647 1611-1637(1758)
203 PF10146 zf-C4H2: Zinc finger- 95.6 0.24 5.1E-06 53.2 14.0 105 604-722 4-109 (230)
204 COG5185 HEC1 Protein involved 95.6 0.2 4.4E-06 57.7 14.0 136 606-745 314-463 (622)
205 PF13514 AAA_27: AAA domain 95.6 0.54 1.2E-05 60.7 19.7 90 633-722 740-842 (1111)
206 PF10591 SPARC_Ca_bdg: Secrete 95.6 0.0048 1E-07 58.9 1.1 64 402-465 49-112 (113)
207 PF05010 TACC: Transforming ac 95.6 1.2 2.5E-05 47.2 18.7 23 689-711 162-184 (207)
208 PF13870 DUF4201: Domain of un 95.5 0.66 1.4E-05 47.4 16.4 37 689-725 106-142 (177)
209 KOG4643 Uncharacterized coiled 95.5 0.55 1.2E-05 58.5 18.2 40 642-681 480-519 (1195)
210 PF11932 DUF3450: Protein of u 95.5 0.67 1.4E-05 49.9 17.2 66 606-671 40-105 (251)
211 TIGR00634 recN DNA repair prot 95.5 0.51 1.1E-05 56.6 17.8 60 652-711 303-369 (563)
212 COG0419 SbcC ATPase involved i 95.5 0.53 1.2E-05 59.5 18.8 54 663-716 694-747 (908)
213 KOG1003 Actin filament-coating 95.5 0.86 1.9E-05 47.6 16.8 88 625-712 112-203 (205)
214 KOG0018 Structural maintenance 95.5 0.5 1.1E-05 59.3 17.7 113 599-711 695-823 (1141)
215 KOG0036 Predicted mitochondria 95.4 0.026 5.7E-07 64.1 6.4 67 7-73 82-150 (463)
216 KOG0946 ER-Golgi vesicle-tethe 95.4 0.2 4.4E-06 60.9 13.8 28 584-611 689-716 (970)
217 COG1340 Uncharacterized archae 95.4 1.2 2.5E-05 49.4 18.6 53 629-681 165-217 (294)
218 KOG4223 Reticulocalbin, calume 95.4 0.02 4.3E-07 63.3 5.1 60 9-68 165-227 (325)
219 PF10267 Tmemb_cc2: Predicted 95.4 0.31 6.6E-06 56.1 14.7 12 406-417 31-42 (395)
220 TIGR02473 flagell_FliJ flagell 95.4 0.73 1.6E-05 44.5 15.4 118 590-708 16-135 (141)
221 TIGR03319 YmdA_YtgF conserved 95.4 1 2.2E-05 53.6 19.5 69 611-679 58-126 (514)
222 PF09304 Cortex-I_coil: Cortex 95.3 0.88 1.9E-05 43.3 15.0 19 584-602 13-31 (107)
223 PF05278 PEARLI-4: Arabidopsis 95.3 0.47 1E-05 51.8 15.2 80 601-681 166-245 (269)
224 TIGR01000 bacteriocin_acc bact 95.3 0.86 1.9E-05 53.1 18.6 41 692-732 288-331 (457)
225 TIGR03185 DNA_S_dndD DNA sulfu 95.3 0.44 9.5E-06 58.0 16.8 44 638-681 423-466 (650)
226 PRK04778 septation ring format 95.3 0.5 1.1E-05 56.8 17.0 73 640-712 352-428 (569)
227 PF02050 FliJ: Flagellar FliJ 95.3 0.65 1.4E-05 42.7 14.3 103 603-707 14-118 (123)
228 KOG0964 Structural maintenance 95.3 0.5 1.1E-05 58.8 16.7 90 624-713 406-499 (1200)
229 KOG1853 LIS1-interacting prote 95.3 0.66 1.4E-05 50.0 15.6 30 632-661 94-123 (333)
230 KOG4674 Uncharacterized conser 95.2 0.63 1.4E-05 61.6 18.5 102 584-685 651-752 (1822)
231 KOG0804 Cytoplasmic Zn-finger 95.2 1 2.2E-05 52.1 17.7 17 400-416 85-101 (493)
232 PF05911 DUF869: Plant protein 95.2 0.72 1.6E-05 57.2 17.9 91 584-681 600-690 (769)
233 PF11932 DUF3450: Protein of u 95.1 0.49 1.1E-05 50.9 14.8 27 734-761 196-225 (251)
234 PF05667 DUF812: Protein of un 95.1 1.6 3.4E-05 53.0 20.3 48 580-627 328-375 (594)
235 COG4026 Uncharacterized protei 95.1 0.14 3E-06 54.2 10.0 75 598-686 132-206 (290)
236 PF10498 IFT57: Intra-flagella 95.1 0.82 1.8E-05 52.1 17.0 51 582-632 193-244 (359)
237 PRK03947 prefoldin subunit alp 95.1 0.59 1.3E-05 45.9 14.0 32 589-620 8-39 (140)
238 PF13870 DUF4201: Domain of un 95.1 1.1 2.4E-05 45.7 16.6 71 644-714 92-164 (177)
239 KOG0994 Extracellular matrix g 95.1 1.1 2.3E-05 56.7 18.7 26 590-615 1545-1570(1758)
240 PF15294 Leu_zip: Leucine zipp 95.0 0.68 1.5E-05 50.9 15.4 124 585-711 130-276 (278)
241 KOG2751 Beclin-like protein [S 95.0 0.49 1.1E-05 54.4 14.7 128 604-733 193-335 (447)
242 PF10168 Nup88: Nuclear pore c 95.0 0.44 9.6E-06 58.8 15.6 74 587-660 543-617 (717)
243 KOG0999 Microtubule-associated 95.0 0.67 1.5E-05 54.6 15.9 132 581-722 108-250 (772)
244 PF05701 WEMBL: Weak chloropla 95.0 0.82 1.8E-05 54.5 17.3 17 692-708 397-413 (522)
245 KOG4643 Uncharacterized coiled 95.0 0.58 1.3E-05 58.3 16.1 8 728-735 657-664 (1195)
246 KOG1899 LAR transmembrane tyro 95.0 0.66 1.4E-05 55.3 15.9 128 586-720 138-270 (861)
247 PF12325 TMF_TATA_bd: TATA ele 94.9 0.97 2.1E-05 44.0 14.6 89 581-673 24-112 (120)
248 PF10498 IFT57: Intra-flagella 94.9 0.48 1E-05 53.9 14.5 74 634-707 264-347 (359)
249 PRK00106 hypothetical protein; 94.9 1.7 3.7E-05 52.0 19.5 11 723-733 224-234 (535)
250 PF09730 BicD: Microtubule-ass 94.9 0.77 1.7E-05 56.4 17.0 126 580-705 41-170 (717)
251 KOG0040 Ca2+-binding actin-bun 94.9 0.055 1.2E-06 68.8 7.5 68 401-468 2247-2323(2399)
252 PF09304 Cortex-I_coil: Cortex 94.9 0.58 1.3E-05 44.5 12.5 18 696-713 87-104 (107)
253 PF04012 PspA_IM30: PspA/IM30 94.9 2 4.3E-05 45.2 18.2 102 580-681 30-143 (221)
254 PF04012 PspA_IM30: PspA/IM30 94.9 2.1 4.5E-05 45.0 18.3 43 585-627 28-70 (221)
255 PF06818 Fez1: Fez1; InterPro 94.9 0.49 1.1E-05 49.7 13.3 94 604-714 13-106 (202)
256 KOG4460 Nuclear pore complex, 94.9 2 4.3E-05 50.8 19.2 127 591-717 570-731 (741)
257 PRK10884 SH3 domain-containing 94.9 0.4 8.7E-06 50.6 12.8 17 586-602 92-108 (206)
258 KOG0979 Structural maintenance 94.8 1 2.2E-05 56.4 17.7 93 619-714 259-351 (1072)
259 PF05911 DUF869: Plant protein 94.8 0.73 1.6E-05 57.1 16.7 137 581-717 611-755 (769)
260 PRK09343 prefoldin subunit bet 94.8 0.88 1.9E-05 44.1 14.0 44 585-628 5-48 (121)
261 PRK10476 multidrug resistance 94.8 0.73 1.6E-05 51.5 15.5 55 650-711 152-206 (346)
262 TIGR03794 NHPM_micro_HlyD NHPM 94.8 1 2.2E-05 51.8 17.0 19 695-713 227-245 (421)
263 COG2433 Uncharacterized conser 94.8 1.1 2.5E-05 53.5 17.2 78 650-735 474-557 (652)
264 PF14788 EF-hand_10: EF hand; 94.7 0.068 1.5E-06 44.5 5.2 47 23-69 1-49 (51)
265 PRK05689 fliJ flagellar biosyn 94.7 1.4 2.9E-05 43.5 15.5 119 590-709 19-139 (147)
266 KOG4251 Calcium binding protei 94.7 0.021 4.5E-07 61.0 2.8 63 405-470 282-346 (362)
267 PF09755 DUF2046: Uncharacteri 94.7 2.1 4.6E-05 47.7 18.2 81 633-713 117-203 (310)
268 PF10212 TTKRSYEDQ: Predicted 94.6 0.55 1.2E-05 55.3 14.3 93 582-684 422-514 (518)
269 COG5185 HEC1 Protein involved 94.6 1.5 3.2E-05 51.1 17.2 102 605-713 292-400 (622)
270 KOG1853 LIS1-interacting prote 94.6 1.4 3.1E-05 47.6 16.1 24 605-628 49-72 (333)
271 PRK12705 hypothetical protein; 94.6 1.3 2.8E-05 52.7 17.5 66 611-676 59-124 (508)
272 PF13805 Pil1: Eisosome compon 94.5 1.8 3.9E-05 47.5 17.0 109 605-713 79-190 (271)
273 COG1382 GimC Prefoldin, chaper 94.5 1 2.2E-05 43.8 13.5 25 604-628 16-40 (119)
274 KOG4593 Mitotic checkpoint pro 94.5 2.3 5E-05 51.7 19.1 52 608-659 151-202 (716)
275 KOG0031 Myosin regulatory ligh 94.5 0.13 2.9E-06 51.8 7.7 62 7-68 101-164 (171)
276 KOG0030 Myosin essential light 94.5 0.11 2.3E-06 51.7 6.8 60 407-467 88-149 (152)
277 PRK09841 cryptic autophosphory 94.4 0.88 1.9E-05 56.2 16.4 49 665-713 347-395 (726)
278 PRK07720 fliJ flagellar biosyn 94.4 1.8 3.9E-05 42.7 15.6 117 592-709 21-139 (146)
279 TIGR02680 conserved hypothetic 94.4 1.6 3.4E-05 57.7 19.5 60 663-722 888-948 (1353)
280 KOG0999 Microtubule-associated 94.4 1.9 4E-05 51.0 17.6 28 657-684 107-134 (772)
281 PF09755 DUF2046: Uncharacteri 94.4 3.3 7.2E-05 46.2 18.8 8 635-642 90-97 (310)
282 PRK12704 phosphodiesterase; Pr 94.3 1.8 3.9E-05 51.7 18.1 13 723-735 209-221 (520)
283 KOG0036 Predicted mitochondria 94.3 0.092 2E-06 59.9 6.9 63 407-469 82-146 (463)
284 cd00176 SPEC Spectrin repeats, 94.3 0.8 1.7E-05 45.6 13.1 25 692-716 183-207 (213)
285 KOG2991 Splicing regulator [RN 94.3 3.3 7.2E-05 45.0 18.0 73 651-723 237-313 (330)
286 PF06160 EzrA: Septation ring 94.3 1.2 2.5E-05 53.6 16.6 144 583-726 347-512 (560)
287 KOG3850 Predicted membrane pro 94.3 1.1 2.4E-05 50.9 15.0 7 636-642 324-330 (455)
288 TIGR03185 DNA_S_dndD DNA sulfu 94.3 1.5 3.3E-05 53.5 17.7 41 636-676 428-468 (650)
289 KOG0243 Kinesin-like protein [ 94.2 2.1 4.6E-05 54.2 18.8 48 407-457 166-224 (1041)
290 KOG0963 Transcription factor/C 94.2 1.7 3.8E-05 52.0 17.2 16 666-681 244-259 (629)
291 PF10267 Tmemb_cc2: Predicted 94.2 1.5 3.3E-05 50.5 16.5 17 437-453 40-56 (395)
292 TIGR02338 gimC_beta prefoldin, 94.2 1.1 2.5E-05 42.4 13.1 40 589-628 5-44 (110)
293 KOG0978 E3 ubiquitin ligase in 94.2 2.3 5E-05 52.0 18.6 98 584-681 500-597 (698)
294 TIGR02231 conserved hypothetic 94.1 0.31 6.8E-06 57.7 11.3 100 581-683 72-171 (525)
295 TIGR02680 conserved hypothetic 94.1 2.1 4.5E-05 56.6 19.5 19 456-474 175-193 (1353)
296 cd00632 Prefoldin_beta Prefold 94.1 1.1 2.3E-05 42.2 12.5 36 592-627 4-39 (105)
297 COG1842 PspA Phage shock prote 94.0 5.1 0.00011 43.1 18.9 103 579-681 30-144 (225)
298 PRK10698 phage shock protein P 94.0 5.3 0.00011 42.7 19.1 44 635-678 98-141 (222)
299 PF05557 MAD: Mitotic checkpoi 94.0 0.58 1.3E-05 57.7 13.5 85 629-713 503-631 (722)
300 PRK11519 tyrosine kinase; Prov 93.9 0.59 1.3E-05 57.6 13.4 47 667-713 349-395 (719)
301 PF13514 AAA_27: AAA domain 93.9 2.2 4.7E-05 55.3 18.9 70 650-719 242-327 (1111)
302 PF14915 CCDC144C: CCDC144C pr 93.8 3.1 6.7E-05 46.2 17.1 41 686-726 212-252 (305)
303 PF03148 Tektin: Tektin family 93.8 3.3 7.3E-05 47.5 18.4 60 600-659 242-302 (384)
304 PF15397 DUF4618: Domain of un 93.8 4.2 9.1E-05 44.5 17.9 66 586-654 80-145 (258)
305 TIGR01000 bacteriocin_acc bact 93.8 1.5 3.2E-05 51.3 15.6 25 689-713 292-316 (457)
306 PF09738 DUF2051: Double stran 93.8 0.6 1.3E-05 52.0 11.8 36 689-724 141-179 (302)
307 TIGR00998 8a0101 efflux pump m 93.7 3.4 7.4E-05 45.6 17.7 21 651-671 147-167 (334)
308 KOG4065 Uncharacterized conser 93.7 0.09 2E-06 50.6 4.6 58 10-67 70-143 (144)
309 PRK12704 phosphodiesterase; Pr 93.7 2.3 4.9E-05 50.9 17.2 21 693-713 160-180 (520)
310 COG0497 RecN ATPase involved i 93.6 2.5 5.3E-05 50.7 17.2 45 669-713 323-367 (557)
311 KOG0040 Ca2+-binding actin-bun 93.6 0.11 2.5E-06 66.2 6.4 79 7-88 2253-2340(2399)
312 PF05384 DegS: Sensor protein 93.6 6.3 0.00014 40.3 17.7 111 603-713 36-151 (159)
313 PF04582 Reo_sigmaC: Reovirus 93.6 0.044 9.6E-07 61.0 2.7 122 582-713 30-151 (326)
314 PF09731 Mitofilin: Mitochondr 93.6 3.7 8E-05 49.3 19.0 18 696-713 379-396 (582)
315 PF05483 SCP-1: Synaptonemal c 93.6 4.1 8.9E-05 49.5 18.6 25 692-716 633-657 (786)
316 KOG0612 Rho-associated, coiled 93.5 1.4 3.1E-05 56.1 15.5 18 393-413 259-276 (1317)
317 PF00769 ERM: Ezrin/radixin/mo 93.5 2.4 5.3E-05 45.9 15.7 50 662-714 80-129 (246)
318 PF07889 DUF1664: Protein of u 93.5 0.97 2.1E-05 44.4 11.3 15 582-596 45-59 (126)
319 PF12252 SidE: Dot/Icm substra 93.5 2 4.2E-05 54.1 16.2 71 650-722 1160-1231(1439)
320 PF09602 PhaP_Bmeg: Polyhydrox 93.5 10 0.00022 39.0 18.8 85 630-716 49-135 (165)
321 PF09787 Golgin_A5: Golgin sub 93.4 1.8 3.8E-05 51.5 15.7 69 605-673 229-311 (511)
322 PF07851 TMPIT: TMPIT-like pro 93.4 0.59 1.3E-05 52.5 11.1 57 586-642 3-59 (330)
323 PF06785 UPF0242: Uncharacteri 93.3 2.7 5.8E-05 47.2 15.5 18 664-681 201-218 (401)
324 PRK10476 multidrug resistance 93.3 3.4 7.4E-05 46.2 17.0 51 663-713 151-201 (346)
325 TIGR02971 heterocyst_DevB ABC 93.3 4.5 9.9E-05 44.6 17.9 23 651-673 136-158 (327)
326 PF06008 Laminin_I: Laminin Do 93.3 2.6 5.6E-05 45.7 15.6 134 588-721 46-193 (264)
327 KOG4223 Reticulocalbin, calume 93.3 0.12 2.6E-06 57.4 5.3 72 401-472 70-144 (325)
328 PRK11281 hypothetical protein; 93.2 1.2 2.5E-05 57.6 14.5 48 634-681 126-180 (1113)
329 KOG1937 Uncharacterized conser 93.2 3.6 7.8E-05 47.8 16.8 133 581-713 346-520 (521)
330 COG1730 GIM5 Predicted prefold 93.2 3.2 6.9E-05 41.8 14.7 40 588-627 7-46 (145)
331 TIGR01010 BexC_CtrB_KpsE polys 93.2 0.9 1.9E-05 51.2 12.3 21 692-712 282-302 (362)
332 KOG4593 Mitotic checkpoint pro 93.1 3.5 7.5E-05 50.2 17.3 28 682-709 269-296 (716)
333 PRK09841 cryptic autophosphory 93.1 1.7 3.6E-05 53.9 15.4 46 666-711 341-386 (726)
334 KOG0239 Kinesin (KAR3 subfamil 93.1 1.9 4.1E-05 53.0 15.5 19 748-766 363-382 (670)
335 KOG0046 Ca2+-binding actin-bun 93.1 0.18 4E-06 58.9 6.6 62 5-67 17-83 (627)
336 cd00632 Prefoldin_beta Prefold 93.1 2.1 4.6E-05 40.2 12.7 29 600-628 5-33 (105)
337 PRK09343 prefoldin subunit bet 93.1 2.6 5.7E-05 40.9 13.6 36 592-627 5-40 (121)
338 PF09787 Golgin_A5: Golgin sub 93.0 1.9 4E-05 51.3 15.2 43 689-732 236-278 (511)
339 COG0419 SbcC ATPase involved i 93.0 4.3 9.3E-05 51.5 19.2 63 650-712 315-378 (908)
340 COG2882 FliJ Flagellar biosynt 93.0 5.6 0.00012 40.2 16.1 90 586-675 15-110 (148)
341 PF15397 DUF4618: Domain of un 93.0 4 8.6E-05 44.7 16.1 127 580-712 81-224 (258)
342 smart00502 BBC B-Box C-termina 92.9 5.5 0.00012 37.1 15.4 20 662-681 77-96 (127)
343 PF05266 DUF724: Protein of un 92.9 2.9 6.2E-05 43.8 14.6 95 603-711 88-182 (190)
344 KOG4251 Calcium binding protei 92.9 0.087 1.9E-06 56.4 3.5 62 404-465 98-164 (362)
345 TIGR02977 phageshock_pspA phag 92.9 9 0.0002 40.6 18.6 51 631-681 94-144 (219)
346 PRK10361 DNA recombination pro 92.9 8.6 0.00019 45.5 19.8 47 663-709 139-186 (475)
347 PF07106 TBPIP: Tat binding pr 92.8 1.5 3.3E-05 44.4 12.3 52 663-716 115-166 (169)
348 PF08702 Fib_alpha: Fibrinogen 92.8 6.3 0.00014 39.6 16.3 44 641-684 87-131 (146)
349 PRK00409 recombination and DNA 92.8 3.3 7.3E-05 51.8 17.5 50 660-710 573-622 (782)
350 TIGR02977 phageshock_pspA phag 92.8 6.7 0.00014 41.6 17.4 34 650-683 99-132 (219)
351 PRK11519 tyrosine kinase; Prov 92.8 2.6 5.6E-05 52.1 16.4 43 667-709 342-384 (719)
352 PF06009 Laminin_II: Laminin D 92.7 0.039 8.4E-07 54.4 0.6 94 636-731 31-124 (138)
353 KOG0962 DNA repair protein RAD 92.7 3.1 6.6E-05 53.9 17.0 71 644-714 872-946 (1294)
354 KOG4673 Transcription factor T 92.7 4.1 8.9E-05 49.4 16.8 86 626-711 406-511 (961)
355 KOG0249 LAR-interacting protei 92.7 2.2 4.8E-05 51.8 14.8 34 655-688 200-233 (916)
356 cd00176 SPEC Spectrin repeats, 92.7 5.6 0.00012 39.5 16.0 30 584-613 37-66 (213)
357 KOG0612 Rho-associated, coiled 92.7 3.6 7.7E-05 52.8 17.1 11 404-414 285-295 (1317)
358 PF12329 TMF_DNA_bd: TATA elem 92.6 1.1 2.4E-05 40.0 9.6 12 585-596 3-14 (74)
359 KOG4807 F-actin binding protei 92.6 3.8 8.3E-05 46.8 15.7 48 630-677 422-469 (593)
360 KOG0239 Kinesin (KAR3 subfamil 92.5 1.3 2.8E-05 54.3 13.1 44 638-681 229-272 (670)
361 PF05546 She9_MDM33: She9 / Md 92.5 2.3 5.1E-05 44.9 13.2 117 580-700 32-150 (207)
362 PF03962 Mnd1: Mnd1 family; I 92.5 2.1 4.6E-05 44.6 13.0 108 615-723 62-174 (188)
363 PF04582 Reo_sigmaC: Reovirus 92.5 0.23 5.1E-06 55.5 6.2 97 581-677 57-153 (326)
364 KOG4302 Microtubule-associated 92.4 0.91 2E-05 55.2 11.5 32 650-681 160-191 (660)
365 KOG1962 B-cell receptor-associ 92.4 1.2 2.7E-05 47.3 11.2 61 621-681 150-210 (216)
366 PF05622 HOOK: HOOK protein; 92.4 0.038 8.1E-07 67.8 0.0 17 603-619 317-333 (713)
367 smart00054 EFh EF-hand, calciu 92.4 0.18 3.9E-06 33.7 3.4 26 43-68 2-27 (29)
368 COG4026 Uncharacterized protei 92.4 3.1 6.8E-05 44.4 13.8 72 633-704 132-207 (290)
369 PF06705 SF-assemblin: SF-asse 92.3 10 0.00023 40.8 18.5 19 663-681 120-138 (247)
370 PF05010 TACC: Transforming ac 92.3 12 0.00025 39.9 18.2 54 663-716 142-203 (207)
371 PF07889 DUF1664: Protein of u 92.3 3.6 7.8E-05 40.5 13.4 47 637-683 69-115 (126)
372 KOG3091 Nuclear pore complex, 92.3 6.5 0.00014 46.3 17.6 59 623-681 384-445 (508)
373 KOG1937 Uncharacterized conser 92.3 3.3 7.1E-05 48.1 14.9 117 602-718 266-426 (521)
374 PF14788 EF-hand_10: EF hand; 92.3 0.34 7.4E-06 40.4 5.4 48 423-470 1-50 (51)
375 PRK00106 hypothetical protein; 92.2 7.2 0.00016 46.9 18.5 71 611-681 79-149 (535)
376 PF15450 DUF4631: Domain of un 92.2 6.5 0.00014 46.6 17.5 116 604-724 394-515 (531)
377 PF05335 DUF745: Protein of un 92.2 5.5 0.00012 41.7 15.4 89 623-711 82-174 (188)
378 KOG2129 Uncharacterized conser 92.1 5.8 0.00013 45.7 16.5 47 603-649 181-228 (552)
379 PF10481 CENP-F_N: Cenp-F N-te 92.1 2.9 6.3E-05 45.8 13.6 95 580-681 18-119 (307)
380 KOG0979 Structural maintenance 92.1 4.2 9.1E-05 51.3 16.7 107 603-709 264-380 (1072)
381 PF06160 EzrA: Septation ring 92.1 7.4 0.00016 46.9 18.7 55 632-686 281-335 (560)
382 PF14915 CCDC144C: CCDC144C pr 92.0 6.6 0.00014 43.7 16.4 68 599-666 142-209 (305)
383 smart00502 BBC B-Box C-termina 92.0 3.1 6.8E-05 38.7 12.4 11 706-716 112-122 (127)
384 TIGR02338 gimC_beta prefoldin, 92.0 4.1 9E-05 38.6 13.2 23 603-625 12-34 (110)
385 PF15272 BBP1_C: Spindle pole 91.9 11 0.00023 39.9 17.1 146 604-760 40-194 (196)
386 TIGR03319 YmdA_YtgF conserved 91.9 5.6 0.00012 47.6 17.2 34 647-680 101-134 (514)
387 PF15066 CAGE1: Cancer-associa 91.9 8.2 0.00018 45.1 17.6 80 605-684 387-473 (527)
388 COG3206 GumC Uncharacterized p 91.9 3.3 7.2E-05 48.3 15.2 51 663-713 341-391 (458)
389 PF04949 Transcrip_act: Transc 91.9 7.6 0.00016 39.2 15.2 120 582-711 36-157 (159)
390 PF15290 Syntaphilin: Golgi-lo 91.9 2.2 4.8E-05 46.8 12.5 104 605-722 72-178 (305)
391 PF14992 TMCO5: TMCO5 family 91.9 1.3 2.9E-05 48.7 11.0 17 581-597 26-42 (280)
392 KOG0288 WD40 repeat protein Ti 91.9 7 0.00015 45.1 16.8 48 581-628 21-68 (459)
393 PF06785 UPF0242: Uncharacteri 91.8 4.1 9E-05 45.7 14.6 26 600-625 91-116 (401)
394 PF01576 Myosin_tail_1: Myosin 91.8 0.048 1E-06 68.3 0.0 23 690-712 259-281 (859)
395 KOG2751 Beclin-like protein [S 91.8 4.8 0.0001 46.6 15.6 146 589-747 145-310 (447)
396 PF09728 Taxilin: Myosin-like 91.7 17 0.00036 40.9 19.7 124 582-709 24-149 (309)
397 PRK03598 putative efflux pump 91.7 4.1 9E-05 45.2 15.0 54 658-711 146-201 (331)
398 smart00054 EFh EF-hand, calciu 91.7 0.23 5E-06 33.2 3.3 27 9-35 2-28 (29)
399 PF11180 DUF2968: Protein of u 91.7 6.7 0.00015 41.1 15.3 102 580-685 81-182 (192)
400 PF00435 Spectrin: Spectrin re 91.7 3.2 6.8E-05 36.6 11.5 61 658-718 42-103 (105)
401 PRK10246 exonuclease subunit S 91.6 8.2 0.00018 49.9 19.4 65 650-714 724-803 (1047)
402 PRK10698 phage shock protein P 91.6 16 0.00034 39.2 18.4 31 651-681 100-130 (222)
403 PRK00286 xseA exodeoxyribonucl 91.5 8.1 0.00017 44.9 17.7 31 650-680 312-343 (438)
404 PF10046 BLOC1_2: Biogenesis o 91.5 4.3 9.4E-05 38.0 12.6 61 619-679 32-95 (99)
405 PF01920 Prefoldin_2: Prefoldi 91.5 5.1 0.00011 36.8 13.0 85 594-681 5-100 (106)
406 cd07667 BAR_SNX30 The Bin/Amph 91.4 13 0.00027 40.5 17.6 50 667-716 170-221 (240)
407 PF13166 AAA_13: AAA domain 91.4 5.8 0.00013 48.6 17.1 30 692-721 435-474 (712)
408 PF02841 GBP_C: Guanylate-bind 91.4 3.8 8.3E-05 45.3 14.2 17 692-708 281-297 (297)
409 KOG0982 Centrosomal protein Nu 91.4 11 0.00023 43.9 17.5 35 693-727 365-399 (502)
410 PF12329 TMF_DNA_bd: TATA elem 91.4 1.9 4.1E-05 38.5 9.5 63 621-683 4-66 (74)
411 PRK10246 exonuclease subunit S 91.3 4.6 0.0001 52.1 16.8 54 663-716 828-881 (1047)
412 COG2433 Uncharacterized conser 91.3 3.3 7.2E-05 49.7 14.2 32 691-722 484-515 (652)
413 KOG0978 E3 ubiquitin ligase in 91.3 9.7 0.00021 46.9 18.4 23 689-711 567-589 (698)
414 TIGR01010 BexC_CtrB_KpsE polys 91.3 1.7 3.6E-05 49.1 11.5 10 696-705 279-288 (362)
415 TIGR02971 heterocyst_DevB ABC 91.3 8.2 0.00018 42.7 16.7 18 696-713 180-197 (327)
416 KOG2643 Ca2+ binding protein, 91.2 0.11 2.3E-06 59.7 1.8 56 16-71 208-263 (489)
417 PRK10361 DNA recombination pro 91.2 11 0.00024 44.7 18.1 52 660-711 143-195 (475)
418 KOG3433 Protein involved in me 91.1 4.8 0.0001 41.9 13.3 99 625-723 84-187 (203)
419 PF13863 DUF4200: Domain of un 91.1 14 0.00031 35.3 16.1 42 640-681 64-105 (126)
420 PF05557 MAD: Mitotic checkpoi 91.1 0.064 1.4E-06 65.9 0.0 8 748-755 323-330 (722)
421 PF05384 DegS: Sensor protein 91.0 20 0.00044 36.7 18.6 21 689-709 134-154 (159)
422 PF01576 Myosin_tail_1: Myosin 91.0 0.065 1.4E-06 67.1 0.0 20 692-711 289-308 (859)
423 PF15294 Leu_zip: Leucine zipp 91.0 2.6 5.6E-05 46.5 12.0 73 590-669 128-209 (278)
424 PF15254 CCDC14: Coiled-coil d 91.0 13 0.00028 46.1 18.6 14 583-596 397-410 (861)
425 PF07111 HCR: Alpha helical co 90.9 11 0.00025 46.1 18.1 78 633-713 518-600 (739)
426 PF07111 HCR: Alpha helical co 90.9 9.4 0.0002 46.7 17.4 59 671-732 242-300 (739)
427 PF04912 Dynamitin: Dynamitin 90.9 3.6 7.8E-05 47.2 13.8 49 657-711 336-384 (388)
428 TIGR01069 mutS2 MutS2 family p 90.8 4.8 0.00011 50.3 15.8 21 661-681 569-589 (771)
429 PTZ00464 SNF-7-like protein; P 90.8 9 0.0002 40.8 15.6 31 583-613 21-51 (211)
430 KOG4809 Rab6 GTPase-interactin 90.8 5.5 0.00012 47.3 14.9 50 663-713 504-553 (654)
431 PRK10869 recombination and rep 90.8 3.1 6.6E-05 50.1 13.6 18 704-721 372-389 (553)
432 PF09744 Jnk-SapK_ap_N: JNK_SA 90.7 5.9 0.00013 40.4 13.6 15 603-617 52-66 (158)
433 TIGR02132 phaR_Bmeg polyhydrox 90.7 6.4 0.00014 40.8 13.7 16 700-715 155-170 (189)
434 TIGR03794 NHPM_micro_HlyD NHPM 90.7 7.8 0.00017 44.7 16.4 24 689-712 228-251 (421)
435 cd07667 BAR_SNX30 The Bin/Amph 90.6 23 0.00049 38.6 18.5 100 604-711 89-190 (240)
436 PF00769 ERM: Ezrin/radixin/mo 90.6 9 0.00019 41.6 15.7 62 653-717 64-125 (246)
437 PF15254 CCDC14: Coiled-coil d 90.5 6.5 0.00014 48.5 15.7 49 635-683 493-541 (861)
438 PF08647 BRE1: BRE1 E3 ubiquit 90.5 9.8 0.00021 35.5 13.9 38 588-625 4-41 (96)
439 PF08172 CASP_C: CASP C termin 90.5 2.1 4.6E-05 46.5 10.8 50 650-702 86-135 (248)
440 PF07106 TBPIP: Tat binding pr 90.4 1.1 2.3E-05 45.5 8.1 49 633-681 76-126 (169)
441 KOG0972 Huntingtin interacting 90.4 8.9 0.00019 42.5 15.2 113 599-717 218-330 (384)
442 KOG1760 Molecular chaperone Pr 90.3 3.1 6.8E-05 40.6 10.6 26 689-714 96-121 (131)
443 PF12072 DUF3552: Domain of un 90.3 18 0.0004 37.9 17.3 26 689-714 152-177 (201)
444 PF08702 Fib_alpha: Fibrinogen 90.2 10 0.00023 38.1 14.7 35 653-687 93-127 (146)
445 PF02050 FliJ: Flagellar FliJ 90.2 12 0.00025 34.4 14.2 35 638-672 54-88 (123)
446 KOG0240 Kinesin (SMY1 subfamil 90.2 10 0.00022 45.5 16.5 90 636-725 414-507 (607)
447 PF15456 Uds1: Up-regulated Du 90.1 4.5 9.7E-05 39.7 11.7 87 581-682 23-120 (124)
448 cd07653 F-BAR_CIP4-like The F- 90.1 15 0.00033 39.1 16.9 50 614-663 104-153 (251)
449 cd00890 Prefoldin Prefoldin is 90.0 4.8 0.0001 38.3 11.8 32 650-681 94-125 (129)
450 KOG3478 Prefoldin subunit 6, K 90.0 10 0.00023 36.5 13.5 36 649-684 75-110 (120)
451 KOG4360 Uncharacterized coiled 90.0 21 0.00045 42.4 18.6 93 584-676 202-301 (596)
452 COG1382 GimC Prefoldin, chaper 90.0 14 0.0003 36.2 14.7 36 648-683 75-110 (119)
453 KOG4572 Predicted DNA-binding 90.0 9.1 0.0002 47.3 16.2 65 600-665 967-1031(1424)
454 PF15066 CAGE1: Cancer-associa 90.0 19 0.00041 42.3 18.1 34 585-618 343-379 (527)
455 PF09738 DUF2051: Double stran 90.0 3.5 7.6E-05 46.1 12.3 70 612-681 102-171 (302)
456 PF15290 Syntaphilin: Golgi-lo 89.9 10 0.00022 41.9 15.2 94 584-684 72-169 (305)
457 KOG0038 Ca2+-binding kinase in 89.9 0.41 8.9E-06 48.0 4.4 53 412-464 113-172 (189)
458 PF13166 AAA_13: AAA domain 89.9 9.6 0.00021 46.7 17.1 19 452-470 175-193 (712)
459 PF02994 Transposase_22: L1 tr 89.9 0.4 8.6E-06 54.8 5.0 48 608-655 84-131 (370)
460 KOG4637 Adaptor for phosphoino 89.9 11 0.00023 43.2 15.7 85 660-754 226-321 (464)
461 KOG4460 Nuclear pore complex, 89.9 17 0.00037 43.5 17.8 131 589-719 590-740 (741)
462 COG4717 Uncharacterized conser 89.9 11 0.00024 47.2 17.0 36 580-615 620-655 (984)
463 PF05483 SCP-1: Synaptonemal c 89.7 16 0.00035 44.6 17.9 64 582-645 242-305 (786)
464 KOG1655 Protein involved in va 89.7 12 0.00026 39.4 14.8 96 643-758 73-176 (218)
465 PF12072 DUF3552: Domain of un 89.7 12 0.00025 39.3 15.3 70 612-681 61-130 (201)
466 KOG4807 F-actin binding protei 89.6 24 0.00053 40.6 18.3 73 650-722 505-585 (593)
467 KOG2129 Uncharacterized conser 89.6 10 0.00022 43.8 15.5 110 609-724 180-321 (552)
468 TIGR03752 conj_TIGR03752 integ 89.6 2.5 5.5E-05 49.5 11.1 13 741-753 171-183 (472)
469 PRK10869 recombination and rep 89.5 7.3 0.00016 46.9 15.4 63 651-713 297-366 (553)
470 TIGR02231 conserved hypothetic 89.5 1.3 2.9E-05 52.5 9.2 18 692-709 156-173 (525)
471 PF02403 Seryl_tRNA_N: Seryl-t 89.5 4.4 9.5E-05 38.0 10.9 67 650-716 29-95 (108)
472 PF03904 DUF334: Domain of unk 89.5 14 0.0003 39.8 15.5 24 633-656 68-91 (230)
473 TIGR00634 recN DNA repair prot 89.5 5.3 0.00012 48.0 14.2 18 704-721 377-394 (563)
474 PF02403 Seryl_tRNA_N: Seryl-t 89.5 4.3 9.2E-05 38.0 10.8 65 612-676 33-100 (108)
475 COG5283 Phage-related tail pro 89.5 8.9 0.00019 49.4 16.3 103 581-683 30-139 (1213)
476 PF05266 DUF724: Protein of un 89.4 16 0.00034 38.4 15.8 118 597-725 65-185 (190)
477 KOG2196 Nuclear porin [Nuclear 89.3 5.5 0.00012 43.1 12.5 138 567-709 100-247 (254)
478 KOG2991 Splicing regulator [RN 89.3 5.2 0.00011 43.5 12.3 105 579-685 183-306 (330)
479 PF02994 Transposase_22: L1 tr 89.3 0.26 5.7E-06 56.2 3.0 27 655-681 142-168 (370)
480 KOG0042 Glycerol-3-phosphate d 89.3 0.68 1.5E-05 55.0 6.3 80 391-471 578-659 (680)
481 PF13949 ALIX_LYPXL_bnd: ALIX 89.3 21 0.00045 38.9 17.5 79 603-681 24-115 (296)
482 COG4477 EzrA Negative regulato 89.2 15 0.00033 43.7 17.0 96 624-719 276-371 (570)
483 COG3206 GumC Uncharacterized p 89.1 5.2 0.00011 46.7 13.5 109 605-713 289-398 (458)
484 PF04740 LXG: LXG domain of WX 89.1 25 0.00055 36.3 17.1 33 582-614 5-37 (204)
485 PF09486 HrpB7: Bacterial type 89.1 29 0.00063 35.5 17.5 55 651-705 80-138 (158)
486 PF05700 BCAS2: Breast carcino 89.0 4.9 0.00011 42.8 12.1 30 655-684 173-202 (221)
487 KOG2685 Cystoskeletal protein 89.0 13 0.00028 43.0 15.9 130 583-715 252-402 (421)
488 PF10212 TTKRSYEDQ: Predicted 88.9 5 0.00011 47.6 13.0 92 621-712 419-511 (518)
489 COG1842 PspA Phage shock prote 88.9 26 0.00056 37.8 17.3 125 582-707 19-155 (225)
490 PF00015 MCPsignal: Methyl-acc 88.9 14 0.00031 37.5 15.1 117 577-693 90-206 (213)
491 KOG2891 Surface glycoprotein [ 88.9 8.8 0.00019 42.2 13.8 141 572-716 293-444 (445)
492 PF03148 Tektin: Tektin family 88.8 19 0.00041 41.5 17.5 133 589-724 210-367 (384)
493 PF05622 HOOK: HOOK protein; 88.8 0.13 2.7E-06 63.3 0.0 147 564-714 486-634 (713)
494 PRK00578 prfB peptide chain re 88.7 9.9 0.00021 43.7 14.9 142 581-723 1-162 (367)
495 KOG3647 Predicted coiled-coil 88.7 7.1 0.00015 42.8 12.8 190 558-754 35-235 (338)
496 PF03962 Mnd1: Mnd1 family; I 88.7 8.1 0.00018 40.3 13.1 98 580-685 62-163 (188)
497 COG1730 GIM5 Predicted prefold 88.7 5.8 0.00013 40.0 11.5 107 600-717 5-144 (145)
498 PF10234 Cluap1: Clusterin-ass 88.7 19 0.00042 39.7 16.4 130 587-717 120-261 (267)
499 PF14073 Cep57_CLD: Centrosome 88.5 15 0.00033 38.2 14.6 120 583-705 53-172 (178)
500 PF04799 Fzo_mitofusin: fzo-li 88.5 1.5 3.2E-05 45.2 7.3 66 646-711 101-167 (171)
No 1
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5e-42 Score=412.44 Aligned_cols=590 Identities=29% Similarity=0.378 Sum_probs=380.5
Q ss_pred ccHHHHHHHHHhhCCCCCCccCHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhcCCCCCHHH
Q 002980 4 PNQDQFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSKRELTPDI 83 (861)
Q Consensus 4 ~e~~~y~~iF~~~D~DgDG~ISg~E~~~~f~~SgLp~~~L~qIW~laD~d~DG~Ls~~EF~~Al~Li~~aQ~G~~lspdl 83 (861)
.+...|+.+|+.+|.+++|+|++.+++.||..+||+..+|.+||.++|..+.|||++.+||+++|||+++|+|..++...
T Consensus 8 ~~q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~~~~~ 87 (847)
T KOG0998|consen 8 PGQPLFDQYFKSADPQGDGRITGAEAVAFLSKSGLPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRELSAKK 87 (847)
T ss_pred CccchHHHhhhccCcccCCcccHHHhhhhhhccccchhhhhccccccccccCCccccccccccchHhhhhhcccCcCccc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred HhhhhcCCCCCCCCCCCcCCCCCCccccccccccCCCCCCCCCcCCCCCCCCCCCCCCCCCcccc----c---ccCCCCC
Q 002980 84 VKAALYGPAATKIPPPQINLSATPAQQINSTAAVSVPQMSVPTQMAPQNFGFRGPGAPNVSQVQQ----Q---SIRPYQA 156 (861)
Q Consensus 84 l~~~l~gp~~~~iP~P~l~~~~~p~p~~~~~a~~~~~~~~~~~p~~~qn~~~~~~~~p~~s~~~q----q---~~~p~q~ 156 (861)
+ +++....|+|++.....+.++.... ...+..+|..+.+.+ | .+.|..+
T Consensus 88 ~-----~~~~~~pp~~~~~~~~~~~~~~~~~-------------------~s~~~~~p~~~~qe~aky~q~f~s~~p~~g 143 (847)
T KOG0998|consen 88 V-----LPASAVPPPPKISHDTSPPSRPSSS-------------------TSAAPFVPAITPQEQAKYDQIFRSLSPSNG 143 (847)
T ss_pred c-----ccccCCCCCCccCccCCCcccCCCC-------------------CCCcccCCCCCHHHHHHHHHHHhccCCCCC
Confidence 5 4566777888777666655554321 112233444444443 2 2222211
Q ss_pred CCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCC
Q 002980 157 APHPTQGSVGPDFSRGGSVMGQTQVMPGSTAPRPPQTMP---AGTAPRPPQSMPASTSPHPPQSMPESTAGLNVPNSNIS 233 (861)
Q Consensus 157 ~~~~~~~~~~p~~~~~~~l~G~~~~l~~~~l~~iw~~~~---~g~~~~~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~ 233 (861)
...|.. +.| +.+ .++||..+|++||+||| .|.+++.||.++| |+|...+. ..
T Consensus 144 ~~sg~~--~~p-----il~---~s~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am----~l~~~~l~----~~------- 198 (847)
T KOG0998|consen 144 LLSGDK--AKP-----ILL---NSKLPSDVLGRIWELSDIDKDGNLDRDEFAVAM----HLINDLLN----GN------- 198 (847)
T ss_pred ccccch--hhh-----hhh---cCCCChhhhccccccccccccCCCChhhhhhhh----hHHHHHhh----cc-------
Confidence 111100 111 122 67999999999999999 4999999999999 98855331 00
Q ss_pred cccccCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCcchhccccccccccCCCCCCCCCcccCCccccccCCCCCCCC
Q 002980 234 SDWLSGGAGGASTGSRAISPST---PLMPTNPQTPVSSSSQLINNKSKALVPSGNGFASDSVFGGDVFSAITTSPKQGPS 310 (861)
Q Consensus 234 ~~~~~g~~~~~~~~~~~~~p~~---p~~~p~p~~~~~~~~~~~~~~~~~~~~~gng~~s~s~~~~d~fsa~~~~~~q~~~ 310 (861)
.-.+|.+ .+++|. .+.+...+..++. +..+++.++
T Consensus 199 ---------------~~p~P~~~p~~lIpps---------------~~~~~~~~~~~~~------------~~~~~~~~~ 236 (847)
T KOG0998|consen 199 ---------------SEPVPSRLPPSLIPPS---------------KSELSANSSSKAI------------PFSQPFLAS 236 (847)
T ss_pred ---------------cCCCCccCCcccCCcc---------------hhcccccCccccc------------ccccccccc
Confidence 0111110 011110 0111111222221 112222111
Q ss_pred CCCCCCCCCCCCCCCcCCCCCCCCCCCCCCccchhhhcccCcccCCCCcCcCCCCCCCCCCCCCCCCCCCCcccCCCCCC
Q 002980 311 SSAYSASTSPTSSANVPVSGAAQPSSKPYPLNSLQSAFSMQPAGSQIPQNQLSLNPGQKISSQSSSFASAGISVGSGNST 390 (861)
Q Consensus 311 ~~~~~~~~~~~~~~~~p~~~~~~p~~~~~~~~~~q~~fs~~~~~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 390 (861)
.... + .++++.-+.++..++++. ..-..+
T Consensus 237 ~~~~---------------------~----------~~~~l~~~s~~~~~~s~~--------------~~~~~~------ 265 (847)
T KOG0998|consen 237 MASP---------------------T----------TLSSLVDLSALNSNPSLS--------------SLSLAS------ 265 (847)
T ss_pred cccc---------------------c----------ccccccchhcccCCcccc--------------cccccc------
Confidence 0000 0 111111222233333221 000000
Q ss_pred CCCCCCCC-CCCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHH
Q 002980 391 PDNSQVPW-PKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCFALYL 469 (861)
Q Consensus 391 ~~~~~~~W-p~ISpedk~~Y~~iF~~lD~d~dG~Isg~ea~~~f~ksgLp~e~L~~IW~LaD~d~dG~LdkdEF~vAMhL 469 (861)
.......| |+|++.++.+|.+||.++|.+.+|+|++.+++++|+.+||++..|++||.|||++++|+|+++|||++|||
T Consensus 266 ~~q~~~s~~~~vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 266 SMQLIVSWSPKVSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred ccccccccCcccChHHHHHHHHHHHhccccCCCcccccccccccccCCCChhhhhhhhhhcchhccCcccccccchhhhh
Confidence 12334556 68999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-hcCCCCCCCCCCCCcCcccccccCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCcc
Q 002980 470 MERY-REGRPLPAVLPRNVMFDETLLSMTSQPPN-AGYGNAAWGPGPGFGPQQVMRPQAMTPAGALRPPNLPTHPTADGA 547 (861)
Q Consensus 470 I~~~-~~G~~lP~~LPp~L~pp~~~~~~~~~ps~-~~~~l~s~~~~~~~~~Q~~~~~~~~~pt~~~~Pp~~~~~p~~d~~ 547 (861)
+.++ .+|+.||.+||.+|+|++.+. ...+.. ..++ ..|....+...+..+..........-+++.. ..+..
T Consensus 346 ~~~~~~~g~~lP~vl~~s~~p~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~----~~~~~ 418 (847)
T KOG0998|consen 346 LEQKRAEGRSLPSVLPSSLIPSENRK--QTNPTTRASTA-ESPSSEQSSLAELKSLALSIASNPREKPRLE----QSSSE 418 (847)
T ss_pred hhhhhhcCCCCcccccccccCccccc--cCCcccccccc-ccCCccccccccccccccccccccccccccc----ccccc
Confidence 9999 789999999999999987543 211110 0111 1232111111111111111111111112110 00000
Q ss_pred cccCCCCCCCCccchhhhhccCCCcccccccchhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 002980 548 RMLNQQKPRAPVLDDNLANQLDNGEYSADSKLQDSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEI 627 (861)
Q Consensus 548 ~~~~~~~s~~p~~d~~~~~~l~~~~~~s~~~~qE~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei 627 (861)
....+.....+..+ +..+|.+.+....++.....+..+++.++..++..++++...++.++++...+.++|.++++++
T Consensus 419 ~~~~~~~~~s~~~~--~~~~l~~~~s~~~~l~~~~~~~~~k~~e~~~~~s~s~~~~~~~~~k~~~~~~~~s~~~~~~~~~ 496 (847)
T KOG0998|consen 419 APRTTPVKTSPVLE--LANELSNLASTSQQLPAQKDTVQDKLNELDAQKSQSKEKFSTTRKKKQEEPQWISSLDNDLNLL 496 (847)
T ss_pred ccccCccccccccc--chhhhhhcchhhhccccccchhhhhhhhhhhhhhHHHhhhhhhhhhhhccccccccccchhhhc
Confidence 00000000111111 1344555555555555444555677889999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHH
Q 002980 628 TERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEEL 707 (861)
Q Consensus 628 ~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL 707 (861)
..++...+++++++.++|++..+|+..|+..|...+..+..++.+|..|..++. ......+.|...........++|
T Consensus 497 ~~~~~~~~~ei~~~~~~ln~~~qq~~~l~~~v~~~~~~ve~l~~~L~~~~~~~~---~~~s~~~~l~~~~~~~~~~~~~~ 573 (847)
T KOG0998|consen 497 PLQLSNDNREISSLEKELNELQQQLSVLEGSVKAIESQVENLQKELLDLIYEMA---DTRSKSTLLDDSFKVGMELFEQL 573 (847)
T ss_pred ccccccchhhHHHHHHHHhhhHHHHhHHhhhhhhhhhhhhhhHhHHHHHHHHHH---hhcccchhhhhhhhhhhhhhhhh
Confidence 999999999999999888888888777777777776666666666666655555 44556667777777666666666
Q ss_pred HHHHHHHhHhcCccccccceeecCCCCCCCcccccccchhhhhhcccCCCC
Q 002980 708 LKALTERCKKHGIDVKSHAVIELPFGWQPGIQEGAGVWDEDWDKFEDAGFG 758 (861)
Q Consensus 708 ~~~L~e~~~~~g~~~~~~~~~e~p~gw~~~~~e~a~~w~e~wd~~~d~~f~ 758 (861)
.+.....|.+++ .-.+.+.+..-||+.| . .|-.+.|+...
T Consensus 574 ~~~~k~~n~~~~--~s~~~l~~~~e~~~~~--------~-~~~~~~d~~~~ 613 (847)
T KOG0998|consen 574 LKGSKLVNGKDQ--NSSTELAGYLEGTING--------K-GLETSMDDSKE 613 (847)
T ss_pred hhhhhccccccc--cchhhhhhhccccccc--------c-cccccccchhh
Confidence 666666676666 3445666777777766 1 45555555544
No 2
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-37 Score=349.79 Aligned_cols=95 Identities=35% Similarity=0.636 Sum_probs=93.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHhc
Q 002980 396 VPWPKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMERYRE 475 (861)
Q Consensus 396 ~~Wp~ISpedk~~Y~~iF~~lD~d~dG~Isg~ea~~~f~ksgLp~e~L~~IW~LaD~d~dG~LdkdEF~vAMhLI~~~~~ 475 (861)
..| .|....|.+|.++|+.+|+.+.|+|||.++|.+|+.|+||...|++||.|+|+|+||+|+.|||++|||||..++.
T Consensus 185 ~eW-AVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~liema~s 263 (1118)
T KOG1029|consen 185 EEW-AVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGLPQNQLAHIWTLSDVDGDGKLSADEFILAMHLIEMAKS 263 (1118)
T ss_pred hhc-cccchhhhHHHHHhhhcccccccccccHHHHHHHHhcCCchhhHhhheeeeccCCCCcccHHHHHHHHHHHHHHhc
Confidence 479 7999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcCcc
Q 002980 476 GRPLPAVLPRNVMFDE 491 (861)
Q Consensus 476 G~~lP~~LPp~L~pp~ 491 (861)
|.+||.+||++|+||+
T Consensus 264 Gq~lP~tlP~E~Vpp~ 279 (1118)
T KOG1029|consen 264 GQPLPKTLPPELVPPS 279 (1118)
T ss_pred CCCCCCCCChhhcCcc
Confidence 9999999999999996
No 3
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=99.90 E-value=2.6e-24 Score=200.21 Aligned_cols=93 Identities=43% Similarity=0.860 Sum_probs=82.0
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHhc--C
Q 002980 399 PKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMERYRE--G 476 (861)
Q Consensus 399 p~ISpedk~~Y~~iF~~lD~d~dG~Isg~ea~~~f~ksgLp~e~L~~IW~LaD~d~dG~LdkdEF~vAMhLI~~~~~--G 476 (861)
|+|+++|+++|+++|+.+|+ .+|+|+|++++.+|++|||+.++|++||+|||.|+||+||++|||+|||||+++++ |
T Consensus 2 ~~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~~~~~~~ 80 (104)
T PF12763_consen 2 PKLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINRKLNGNG 80 (104)
T ss_dssp ---SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHHHhcCCC
Confidence 67999999999999999995 68999999999999999999999999999999999999999999999999999875 5
Q ss_pred CCCCCCCCCCCcCccc
Q 002980 477 RPLPAVLPRNVMFDET 492 (861)
Q Consensus 477 ~~lP~~LPp~L~pp~~ 492 (861)
.+||.+||+.|+|++.
T Consensus 81 ~~lP~~LP~~L~p~s~ 96 (104)
T PF12763_consen 81 KPLPSSLPPSLIPPSK 96 (104)
T ss_dssp S---SSSSGGGSSSCG
T ss_pred CCCchhcCHHHCCCCc
Confidence 6999999999999974
No 4
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=3.4e-18 Score=196.34 Aligned_cols=93 Identities=39% Similarity=0.674 Sum_probs=88.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHH
Q 002980 394 SQVPWPKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMERY 473 (861)
Q Consensus 394 ~~~~Wp~ISpedk~~Y~~iF~~lD~d~dG~Isg~ea~~~f~ksgLp~e~L~~IW~LaD~d~dG~LdkdEF~vAMhLI~~~ 473 (861)
....| .||.+|+.+|+..|..+. .+.|||+|+++|+||++||||.-+|.+||.|+|.|+||++|-.||.|||.||..+
T Consensus 4 ~~n~W-avT~~Er~K~~~qF~~Lk-p~~gfitg~qArnfflqS~LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lk 81 (1118)
T KOG1029|consen 4 MTNPW-AVTDEERQKHDAQFGQLK-PGQGFITGDQARNFFLQSGLPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLK 81 (1118)
T ss_pred CCCcc-ccchHHHHHHHHHHhccC-CCCCccchHhhhhhHHhcCCChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHH
Confidence 34679 799999999999999996 5899999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCCCc
Q 002980 474 REGRPLPAVLPRNVM 488 (861)
Q Consensus 474 ~~G~~lP~~LPp~L~ 488 (861)
+.|++||..|||+|.
T Consensus 82 LqG~~lP~~LPPsll 96 (1118)
T KOG1029|consen 82 LQGIQLPPVLPPSLL 96 (1118)
T ss_pred hcCCcCCCCCChHHh
Confidence 999999999999764
No 5
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.6e-19 Score=199.77 Aligned_cols=99 Identities=36% Similarity=0.699 Sum_probs=95.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHH
Q 002980 391 PDNSQVPWPKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCFALYLM 470 (861)
Q Consensus 391 ~~~~~~~Wp~ISpedk~~Y~~iF~~lD~d~dG~Isg~ea~~~f~ksgLp~e~L~~IW~LaD~d~dG~LdkdEF~vAMhLI 470 (861)
++.-+.+| .|++|.+++|-+.|+.+.+|-.|+|+|..+++||.|++||.++|.+||.|||.|+||.|+++|||.|||||
T Consensus 216 sS~~d~pw-~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 216 SSELDTPW-QITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred ccccCCcc-ccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 45667889 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCCCcCc
Q 002980 471 ERYREGRPLPAVLPRNVMFD 490 (861)
Q Consensus 471 ~~~~~G~~lP~~LPp~L~pp 490 (861)
-.+++||+||..||.+|.|-
T Consensus 295 VaRkNgypLPe~LP~~L~P~ 314 (737)
T KOG1955|consen 295 VARKNGYPLPESLPHCLHPN 314 (737)
T ss_pred eecccCCCCCCCCccccChh
Confidence 99999999999999999863
No 6
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.2e-19 Score=219.65 Aligned_cols=372 Identities=17% Similarity=0.259 Sum_probs=233.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHH
Q 002980 391 PDNSQVPWPKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCFALYLM 470 (861)
Q Consensus 391 ~~~~~~~Wp~ISpedk~~Y~~iF~~lD~d~dG~Isg~ea~~~f~ksgLp~e~L~~IW~LaD~d~dG~LdkdEF~vAMhLI 470 (861)
...+..-| .|++.|+++|+++|..+.+ ..|+++|+.++.+|++++|+.+.|.+||+|||+|.+|.|++.||.++||||
T Consensus 114 ~s~~~~~p-~~~~qe~aky~q~f~s~~p-~~g~~sg~~~~pil~~s~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~ 191 (847)
T KOG0998|consen 114 TSAAPFVP-AITPQEQAKYDQIFRSLSP-SNGLLSGDKAKPILLNSKLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLI 191 (847)
T ss_pred CCCcccCC-CCCHHHHHHHHHHHhccCC-CCCccccchhhhhhhcCCCChhhhccccccccccccCCCChhhhhhhhhHH
Confidence 34566779 6999999999999999996 599999999999999999999999999999999999999999999999999
Q ss_pred HHHhc--CCCCCCCCCCCCcCcccccccCC-----CC------------C-----------------------CCCCCCC
Q 002980 471 ERYRE--GRPLPAVLPRNVMFDETLLSMTS-----QP------------P-----------------------NAGYGNA 508 (861)
Q Consensus 471 ~~~~~--G~~lP~~LPp~L~pp~~~~~~~~-----~p------------s-----------------------~~~~~l~ 508 (861)
+.+++ -.++|..||+.++++.+...... .| . ...+...
T Consensus 192 ~~~l~~~~~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~ 271 (847)
T KOG0998|consen 192 NDLLNGNSEPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIV 271 (847)
T ss_pred HHHhhcccCCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCcccccccccccccccc
Confidence 99999 58999999999999864431110 11 0 0011122
Q ss_pred CCCC--CC----CC----CCC----CC----CCCC----------------------------------------ccCCC
Q 002980 509 AWGP--GP----GF----GPQ----QV----MRPQ----------------------------------------AMTPA 530 (861)
Q Consensus 509 s~~~--~~----~~----~~Q----~~----~~~~----------------------------------------~~~pt 530 (861)
+|.+ .+ .+ .+. .| ..++ ..+..
T Consensus 272 s~~~~vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~~~~~ 351 (847)
T KOG0998|consen 272 SWSPKVSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLLEQKRA 351 (847)
T ss_pred ccCcccChHHHHHHHHHHHhccccCCCcccccccccccccCCCChhhhhhhhhhcchhccCcccccccchhhhhhhhhhh
Confidence 2210 00 00 000 00 0000 00000
Q ss_pred CCCCCC-C-C-CCCCCCCcccccCCCCCC-----CCccchhhhhccCCCccccc-------ccchhhhHHhhhHHHHHHH
Q 002980 531 GALRPP-N-L-PTHPTADGARMLNQQKPR-----APVLDDNLANQLDNGEYSAD-------SKLQDSTTAGKKVDEREKV 595 (861)
Q Consensus 531 ~~~~Pp-~-~-~~~p~~d~~~~~~~~~s~-----~p~~d~~~~~~l~~~~~~s~-------~~~qE~~elekela~Le~q 595 (861)
.+...| + + .+.+...+... ..... .++..+....++....+... .+++...++......+...
T Consensus 352 ~g~~lP~vl~~s~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~s~ 429 (847)
T KOG0998|consen 352 EGRSLPSVLPSSLIPSENRKQT--NPTTRASTAESPSSEQSSLAELKSLALSIASNPREKPRLEQSSSEAPRTTPVKTSP 429 (847)
T ss_pred cCCCCcccccccccCccccccC--CccccccccccCCccccccccccccccccccccccccccccccccccccCcccccc
Confidence 110011 0 0 01111111100 00000 01111111100100000000 0111111111112222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 596 ILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKME 675 (861)
Q Consensus 596 i~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~e 675 (861)
+.+++.++..+..+.+.|..++.....+++++...++..+..+...++++.++..-+.++-.+++.++.-+.....++..
T Consensus 430 ~~~~~~~l~~~~s~~~~l~~~~~~~~~k~~e~~~~~s~s~~~~~~~~~k~~~~~~~~s~~~~~~~~~~~~~~~~~~ei~~ 509 (847)
T KOG0998|consen 430 VLELANELSNLASTSQQLPAQKDTVQDKLNELDAQKSQSKEKFSTTRKKKQEEPQWISSLDNDLNLLPLQLSNDNREISS 509 (847)
T ss_pred cccchhhhhhcchhhhccccccchhhhhhhhhhhhhhHHHhhhhhhhhhhhccccccccccchhhhcccccccchhhHHH
Confidence 34455566777788888888888777888888888887778888888888887766666555555555444444444444
Q ss_pred HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhHhcCccccccceeecCCCCCCCcccccccchhhhhhcccC
Q 002980 676 LHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGIDVKSHAVIELPFGWQPGIQEGAGVWDEDWDKFEDA 755 (861)
Q Consensus 676 LqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L~e~~~~~g~~~~~~~~~e~p~gw~~~~~e~a~~w~e~wd~~~d~ 755 (861)
+..+|..| +++.+.|...+..+...+++|++.|...|.++.+.-+..+++++.|.|+..++|....|+++|++..+
T Consensus 510 ~~~~ln~~---~qq~~~l~~~v~~~~~~ve~l~~~L~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~k~~n~~~~- 585 (847)
T KOG0998|consen 510 LEKELNEL---QQQLSVLEGSVKAIESQVENLQKELLDLIYEMADTRSKSTLLDDSFKVGMELFEQLLKGSKLVNGKDQ- 585 (847)
T ss_pred HHHHHhhh---HHHHhHHhhhhhhhhhhhhhhHhHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhhhhhccccccc-
Confidence 44444422 22235666666666666999999999999999999999999999999999999999999999999877
Q ss_pred CCCccccccccCCCC
Q 002980 756 GFGNEITFDVKNASA 770 (861)
Q Consensus 756 ~f~~~~~~~~~~~~~ 770 (861)
-+.+++.-.+++.+.
T Consensus 586 ~s~~~l~~~~e~~~~ 600 (847)
T KOG0998|consen 586 NSSTELAGYLEGTIN 600 (847)
T ss_pred cchhhhhhhcccccc
Confidence 444777777776664
No 7
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.68 E-value=2.5e-16 Score=143.62 Aligned_cols=94 Identities=35% Similarity=0.731 Sum_probs=91.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHhcC
Q 002980 397 PWPKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMERYREG 476 (861)
Q Consensus 397 ~Wp~ISpedk~~Y~~iF~~lD~d~dG~Isg~ea~~~f~ksgLp~e~L~~IW~LaD~d~dG~LdkdEF~vAMhLI~~~~~G 476 (861)
+| +|+.+++.+|.++|..+|+|++|+|+.++++.+|...+++.+.+.+||.++|.+++|.|+++||+.+|+++++...|
T Consensus 1 ~~-~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g 79 (96)
T smart00027 1 DW-AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNG 79 (96)
T ss_pred CC-CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcC
Confidence 69 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcCcc
Q 002980 477 RPLPAVLPRNVMFDE 491 (861)
Q Consensus 477 ~~lP~~LPp~L~pp~ 491 (861)
++||..||+.|+|+.
T Consensus 80 ~~~~~~~~~~~~~~~ 94 (96)
T smart00027 80 YPIPASLPPSLIPPS 94 (96)
T ss_pred CCCCccCCHhhcCCC
Confidence 999999999999763
No 8
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=99.66 E-value=1.1e-16 Score=149.38 Aligned_cols=82 Identities=33% Similarity=0.547 Sum_probs=71.0
Q ss_pred CccHHHHHHHHHhhCCCCCCccCHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhcCC--CCC
Q 002980 3 GPNQDQFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSKR--ELT 80 (861)
Q Consensus 3 ~~e~~~y~~iF~~~D~DgDG~ISg~E~~~~f~~SgLp~~~L~qIW~laD~d~DG~Ls~~EF~~Al~Li~~aQ~G~--~ls 80 (861)
-.|+..|+.+|+.+|. ++|+|++++++.||.+|||+.++|++||+++|.|+||+|+++||++||+||.++++|. +++
T Consensus 6 ~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~~~~~~~~~lP 84 (104)
T PF12763_consen 6 PEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINRKLNGNGKPLP 84 (104)
T ss_dssp CCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHHHHHHTTS---
T ss_pred HHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHHHhcCCCCCCc
Confidence 4688999999999995 7899999999999999999999999999999999999999999999999999988764 554
Q ss_pred HHHHh
Q 002980 81 PDIVK 85 (861)
Q Consensus 81 pdll~ 85 (861)
..++.
T Consensus 85 ~~LP~ 89 (104)
T PF12763_consen 85 SSLPP 89 (104)
T ss_dssp SSSSG
T ss_pred hhcCH
Confidence 44433
No 9
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=99.62 E-value=2.2e-15 Score=153.25 Aligned_cols=181 Identities=14% Similarity=0.210 Sum_probs=124.2
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCC
Q 002980 459 SLREFCFALYLMERYREGRPLPAVLPRNVMFDETLLSMTSQPPNAGYGNAAWGPGPGFGPQQVMRPQAMTPAGALRPPNL 538 (861)
Q Consensus 459 dkdEF~vAMhLI~~~~~G~~lP~~LPp~L~pp~~~~~~~~~ps~~~~~l~s~~~~~~~~~Q~~~~~~~~~pt~~~~Pp~~ 538 (861)
|||.+++++|+++++.+|+.||..||++|. ++|. +.++. |++.+. +.+.+..+.. ..+++..
T Consensus 1 dKD~~L~FLHiLnqR~~G~rIPr~vPasLr--asf~--k~~i~---Ydl~~~-~~s~~~~~~~----~~t~t~~------ 62 (195)
T PF12761_consen 1 DKDQCLYFLHILNQRNDGYRIPREVPASLR--ASFE--KEQID---YDLNSS-PQSRWKPSSS----TSTSTGR------ 62 (195)
T ss_pred CCcchhhHHHHHhccccCCcCCccCCHHHH--HHHh--cCCcC---ccccch-hhcccccCCC----CCCcchh------
Confidence 578899999999999999999999999999 8887 77787 888742 1111111111 0001000
Q ss_pred CCCCCCCccc-cc--CCCCCCCCccchhhhhccCCCcccccccchhhhHHhhhHHHHHHHHHHHHH-----------HHH
Q 002980 539 PTHPTADGAR-ML--NQQKPRAPVLDDNLANQLDNGEYSADSKLQDSTTAGKKVDEREKVILDSRE-----------KIE 604 (861)
Q Consensus 539 ~~~p~~d~~~-~~--~~~~s~~p~~d~~~~~~l~~~~~~s~~~~qE~~elekela~Le~qi~~sre-----------e~e 604 (861)
-....+.+- .- ........++||+. .++.+| |+..|+++|++|+.++.+.++ +..
T Consensus 63 -k~~f~~~yl~rlG~~~~s~~~~gTdfS~-~~~~dw---------EevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~ 131 (195)
T PF12761_consen 63 -KAKFGDSYLSRLGRGGKSYKEKGTDFSA-TEGTDW---------EEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPA 131 (195)
T ss_pred -hhhhhHHHHHHhccccCCCCCCCCCCCC-CCCCch---------HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHH
Confidence 000000000 00 00112444778877 447788 555566666666666664333 346
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 605 FYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQ 678 (861)
Q Consensus 605 ~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqq 678 (861)
.++.+|++|+.||.+...++.+ .......++..++ .||+.||+||.++|.+|+.+++||++|++
T Consensus 132 lvk~e~EqLL~YK~~ql~~~~~---~~~~~~~~l~~v~-------~Dl~~ie~QV~~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 132 LVKREFEQLLDYKERQLRELEE---GRSKSGKNLKSVR-------EDLDTIEEQVDGLESHLSSKKQELQQLRQ 195 (195)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc---cCCCCCCCHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7899999999999999888875 3334678899999 99999999999999999999999999974
No 10
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=7.9e-14 Score=152.14 Aligned_cols=98 Identities=29% Similarity=0.595 Sum_probs=91.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHH
Q 002980 392 DNSQVPWPKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCFALYLME 471 (861)
Q Consensus 392 ~~~~~~Wp~ISpedk~~Y~~iF~~lD~d~dG~Isg~ea~~~f~ksgLp~e~L~~IW~LaD~d~dG~LdkdEF~vAMhLI~ 471 (861)
+..+.+| ++ ..||-.|++||..+. .-+|+|+|..++.-|.+++||.++|.+||.|+|+|+||+||-+||++|-|||+
T Consensus 431 g~d~~ew-vv-~~dk~~yde~fy~l~-p~~gk~sg~~ak~~mv~sklpnsvlgkiwklad~d~dg~ld~eefala~hli~ 507 (532)
T KOG1954|consen 431 GADEAEW-VV-SKDKPTYDEIFYTLS-PVNGKLSGRNAKKEMVKSKLPNSVLGKIWKLADIDKDGMLDDEEFALANHLIK 507 (532)
T ss_pred CCcccce-ee-ecCCcchHhhhhccc-ccCceeccchhHHHHHhccCchhHHHhhhhhhcCCcccCcCHHHHHHHHHHHh
Confidence 4567889 44 468999999999998 47999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCCCCCCcCccc
Q 002980 472 RYREGRPLPAVLPRNVMFDET 492 (861)
Q Consensus 472 ~~~~G~~lP~~LPp~L~pp~~ 492 (861)
.+++|+.||..||+.|+||+.
T Consensus 508 ~kleghelp~~lp~hl~pps~ 528 (532)
T KOG1954|consen 508 LKLEGHELPSELPKHLVPPSK 528 (532)
T ss_pred eecccccCccccCcccCCccc
Confidence 999999999999999999974
No 11
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.23 E-value=3e-11 Score=110.31 Aligned_cols=84 Identities=27% Similarity=0.490 Sum_probs=80.1
Q ss_pred ccHHHHHHHHHhhCCCCCCccCHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhcCCCCCHHH
Q 002980 4 PNQDQFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSKRELTPDI 83 (861)
Q Consensus 4 ~e~~~y~~iF~~~D~DgDG~ISg~E~~~~f~~SgLp~~~L~qIW~laD~d~DG~Ls~~EF~~Al~Li~~aQ~G~~lspdl 83 (861)
.+...|..+|+.+|.|++|+|+..|++.+|...|++...+.+||..+|.+++|+|+++||+.+|+++...+.|.+++.++
T Consensus 7 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~~~~~~~ 86 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGYPIPASL 86 (96)
T ss_pred HHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCCCCCccC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred Hhhh
Q 002980 84 VKAA 87 (861)
Q Consensus 84 l~~~ 87 (861)
+.+.
T Consensus 87 ~~~~ 90 (96)
T smart00027 87 PPSL 90 (96)
T ss_pred CHhh
Confidence 8765
No 12
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.05 E-value=6.2e-10 Score=93.31 Aligned_cols=67 Identities=45% Similarity=0.735 Sum_probs=64.1
Q ss_pred HHHHHHhhCCCCCCccCHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhc
Q 002980 9 FESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQS 75 (861)
Q Consensus 9 y~~iF~~~D~DgDG~ISg~E~~~~f~~SgLp~~~L~qIW~laD~d~DG~Ls~~EF~~Al~Li~~aQ~ 75 (861)
|+.+|..+|.|++|+|+.+|+..+|...|++...+.+||..+|.+++|.|+++||+.+|..|..+++
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 67 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIALALN 67 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 6889999999999999999999999999999999999999999999999999999999999998863
No 13
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.00 E-value=1.3e-09 Score=91.34 Aligned_cols=67 Identities=40% Similarity=0.707 Sum_probs=64.1
Q ss_pred HHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHhc
Q 002980 409 YSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMERYRE 475 (861)
Q Consensus 409 Y~~iF~~lD~d~dG~Isg~ea~~~f~ksgLp~e~L~~IW~LaD~d~dG~LdkdEF~vAMhLI~~~~~ 475 (861)
|+++|..+|++++|+|+.++++.+|...|++.+.+.+||..+|.+++|.|+++||+.+|+++..+++
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 67 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIALALN 67 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 6789999999999999999999999999999999999999999999999999999999999998764
No 14
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=4.3e-10 Score=125.91 Aligned_cols=81 Identities=30% Similarity=0.466 Sum_probs=76.3
Q ss_pred ccHHHHHHHHHhhCCCCCCccCHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhcCCCCCHHH
Q 002980 4 PNQDQFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSKRELTPDI 83 (861)
Q Consensus 4 ~e~~~y~~iF~~~D~DgDG~ISg~E~~~~f~~SgLp~~~L~qIW~laD~d~DG~Ls~~EF~~Al~Li~~aQ~G~~lspdl 83 (861)
++++||..-|+.+..|-.|+|+|..++.||.++.|+-.+|..||+|+|.|+||-|+..|||.||+||-.-.+|.+|...+
T Consensus 228 EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaRkNgypLPe~L 307 (737)
T KOG1955|consen 228 EQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVARKNGYPLPESL 307 (737)
T ss_pred HHHHHHHhhhhcccCCcccccccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHhhHhheeecccCCCCCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999885444
Q ss_pred H
Q 002980 84 V 84 (861)
Q Consensus 84 l 84 (861)
+
T Consensus 308 P 308 (737)
T KOG1955|consen 308 P 308 (737)
T ss_pred c
Confidence 3
No 15
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.79 E-value=1e-08 Score=86.45 Aligned_cols=60 Identities=25% Similarity=0.390 Sum_probs=53.3
Q ss_pred HHHHHHHhhCCCCCCccCHHHHHHHHHhCCC------CHHHHHHHHHHhCCCCCCCcCHHHHHHHH
Q 002980 8 QFESFFRRADLDGDGRISGAEAVAFFQGSNL------PKQVLAQIWMHADHNHTSYLGRQEFYNAL 67 (861)
Q Consensus 8 ~y~~iF~~~D~DgDG~ISg~E~~~~f~~SgL------p~~~L~qIW~laD~d~DG~Ls~~EF~~Al 67 (861)
.++++|+.+|.|+||+|+..|++.++...+. .++.+..||..+|.|+||.|+++||+.+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4789999999999999999999999998764 33566777999999999999999999886
No 16
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=6e-09 Score=114.63 Aligned_cols=84 Identities=26% Similarity=0.428 Sum_probs=78.7
Q ss_pred CccHHHHHHHHHhhCCCCCCccCHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhcCCCCCHH
Q 002980 3 GPNQDQFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSKRELTPD 82 (861)
Q Consensus 3 ~~e~~~y~~iF~~~D~DgDG~ISg~E~~~~f~~SgLp~~~L~qIW~laD~d~DG~Ls~~EF~~Al~Li~~aQ~G~~lspd 82 (861)
++++..|+++|..+-+ -+|+|||..++..+-++.||+.+|.+||.++|.|+||+|+-+||..|-+||.+...|++++.+
T Consensus 440 ~~dk~~yde~fy~l~p-~~gk~sg~~ak~~mv~sklpnsvlgkiwklad~d~dg~ld~eefala~hli~~kleghelp~~ 518 (532)
T KOG1954|consen 440 SKDKPTYDEIFYTLSP-VNGKLSGRNAKKEMVKSKLPNSVLGKIWKLADIDKDGMLDDEEFALANHLIKLKLEGHELPSE 518 (532)
T ss_pred ecCCcchHhhhhcccc-cCceeccchhHHHHHhccCchhHHHhhhhhhcCCcccCcCHHHHHHHHHHHheecccccCccc
Confidence 4678899999999976 789999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHhhh
Q 002980 83 IVKAA 87 (861)
Q Consensus 83 ll~~~ 87 (861)
++.+.
T Consensus 519 lp~hl 523 (532)
T KOG1954|consen 519 LPKHL 523 (532)
T ss_pred cCccc
Confidence 87665
No 17
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.67 E-value=6.5e-08 Score=88.26 Aligned_cols=71 Identities=20% Similarity=0.260 Sum_probs=64.7
Q ss_pred HHHHHHHHHhhCC-CCCCccCHHHHHHHHHh-CC--CCH-HHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhcC
Q 002980 6 QDQFESFFRRADL-DGDGRISGAEAVAFFQG-SN--LPK-QVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSK 76 (861)
Q Consensus 6 ~~~y~~iF~~~D~-DgDG~ISg~E~~~~f~~-Sg--Lp~-~~L~qIW~laD~d~DG~Ls~~EF~~Al~Li~~aQ~G 76 (861)
...+..+|+.+|. +++|+|+.+|++.+++. -| |+. ..+.+++..+|.|+||.|+++||+..|.-++.+..+
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~~~~~ 82 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAKAVKG 82 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 4578999999999 99999999999999987 44 777 899999999999999999999999999999888665
No 18
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.67 E-value=4.6e-08 Score=82.56 Aligned_cols=60 Identities=27% Similarity=0.425 Sum_probs=53.6
Q ss_pred HHHHHHHhhCCCCCCccCHHHHHHHHHhcCC------CHHHHHHHHHhhCCCCCCccCHHHHHHHH
Q 002980 408 KYSKVFMEVDTDRDGRITGEQARNLFMSWRL------PREVLKQVWDLSDQDSDSMLSLREFCFAL 467 (861)
Q Consensus 408 ~Y~~iF~~lD~d~dG~Isg~ea~~~f~ksgL------p~e~L~~IW~LaD~d~dG~LdkdEF~vAM 467 (861)
+++++|..+|+|++|+|+.+|++.++...+. ..+.+..||..+|.|+||.|+++||+.+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 5789999999999999999999999998764 24566677999999999999999999887
No 19
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.50 E-value=5.3e-07 Score=81.98 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=63.3
Q ss_pred HHHHHHHHHhhC-CCCCC-ccCHHHHHHHHHh-----CC--CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhcC
Q 002980 6 QDQFESFFRRAD-LDGDG-RISGAEAVAFFQG-----SN--LPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSK 76 (861)
Q Consensus 6 ~~~y~~iF~~~D-~DgDG-~ISg~E~~~~f~~-----Sg--Lp~~~L~qIW~laD~d~DG~Ls~~EF~~Al~Li~~aQ~G 76 (861)
...+.++|+.+| .|+|| +|+..|++.+|+. .| .++..+.++++.+|.|+||.|+++||+..+.-++.+..+
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~~~~~~ 86 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVTTACHE 86 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHhh
Confidence 457899999998 89999 5999999999987 55 578889999999999999999999999999888887543
No 20
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.47 E-value=6.9e-07 Score=81.05 Aligned_cols=71 Identities=21% Similarity=0.235 Sum_probs=63.1
Q ss_pred HHHHHHHHHhhC-CCCCCc-cCHHHHHHHHHh-C------CCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhcC
Q 002980 6 QDQFESFFRRAD-LDGDGR-ISGAEAVAFFQG-S------NLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSK 76 (861)
Q Consensus 6 ~~~y~~iF~~~D-~DgDG~-ISg~E~~~~f~~-S------gLp~~~L~qIW~laD~d~DG~Ls~~EF~~Al~Li~~aQ~G 76 (861)
...++++|+.+| .|++|+ |+..|++.+|+. . ..+...+.+|+..+|.|++|.|+++||+..|..++.+..+
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~~~~~ 87 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVACNN 87 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 357899999997 999995 999999999975 2 3478899999999999999999999999999999988765
No 21
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.45 E-value=6.2e-07 Score=81.89 Aligned_cols=70 Identities=20% Similarity=0.215 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhCC-CCCCccCHHHHHHHHHh-cC--CCH-HHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHh
Q 002980 405 DIQKYSKVFMEVDT-DRDGRITGEQARNLFMS-WR--LPR-EVLKQVWDLSDQDSDSMLSLREFCFALYLMERYR 474 (861)
Q Consensus 405 dk~~Y~~iF~~lD~-d~dG~Isg~ea~~~f~k-sg--Lp~-e~L~~IW~LaD~d~dG~LdkdEF~vAMhLI~~~~ 474 (861)
-+..+..+|..+|+ +++|+|+.++++.+|.+ .+ |.. +++..+..-+|.|+||+|+|+||+..|.-+..+-
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~~~ 80 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAKAV 80 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 35678999999999 99999999999999997 54 777 9999999999999999999999988887665543
No 22
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.42 E-value=1.1e-06 Score=80.46 Aligned_cols=69 Identities=23% Similarity=0.283 Sum_probs=60.4
Q ss_pred HHHHHHHHHhhC-CCCCC-ccCHHHHHHHHHh------C-CCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHh
Q 002980 6 QDQFESFFRRAD-LDGDG-RISGAEAVAFFQG------S-NLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQ 74 (861)
Q Consensus 6 ~~~y~~iF~~~D-~DgDG-~ISg~E~~~~f~~------S-gLp~~~L~qIW~laD~d~DG~Ls~~EF~~Al~Li~~aQ 74 (861)
...+.++|..+| .|+|| +|+.+|++.+|+. . ...+..+.+|++.+|.|+||.|+++||+..|.-++.+.
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~~~ 86 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTVAC 86 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 456888999999 78999 5999999999965 2 24778999999999999999999999999998888774
No 23
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.37 E-value=1.5e-06 Score=79.18 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhCC-CC-CCccCHHHHHHHHHh-------CCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHH
Q 002980 6 QDQFESFFRRADL-DG-DGRISGAEAVAFFQG-------SNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVA 73 (861)
Q Consensus 6 ~~~y~~iF~~~D~-Dg-DG~ISg~E~~~~f~~-------SgLp~~~L~qIW~laD~d~DG~Ls~~EF~~Al~Li~~a 73 (861)
...+..+|..+|. |+ ||+|+..|++.+|+. ..++...+..|++.+|.|+||.|+++||+.+|.-++++
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~~ 83 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSIA 83 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 3568899999997 97 699999999999874 25688999999999999999999999999999888877
No 24
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.34 E-value=1.7e-06 Score=78.77 Aligned_cols=67 Identities=21% Similarity=0.310 Sum_probs=59.8
Q ss_pred HHHHHHHHhhCC-CC-CCccCHHHHHHHHH-----hCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHH
Q 002980 7 DQFESFFRRADL-DG-DGRISGAEAVAFFQ-----GSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVA 73 (861)
Q Consensus 7 ~~y~~iF~~~D~-Dg-DG~ISg~E~~~~f~-----~SgLp~~~L~qIW~laD~d~DG~Ls~~EF~~Al~Li~~a 73 (861)
...-++|..+|. |+ +|+|+.+|++.+|. ...++++.+.+||+.+|.|+||.|+++||+..|.-++.|
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~~ 83 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALALI 83 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHH
Confidence 456789999998 77 89999999999996 234799999999999999999999999999998888776
No 25
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.30 E-value=3e-06 Score=77.33 Aligned_cols=70 Identities=27% Similarity=0.369 Sum_probs=61.8
Q ss_pred HHHHHHHHHh-hCCCCCC-ccCHHHHHHHHHhC-------CCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhc
Q 002980 6 QDQFESFFRR-ADLDGDG-RISGAEAVAFFQGS-------NLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQS 75 (861)
Q Consensus 6 ~~~y~~iF~~-~D~DgDG-~ISg~E~~~~f~~S-------gLp~~~L~qIW~laD~d~DG~Ls~~EF~~Al~Li~~aQ~ 75 (861)
......+|.. +|.|++| +|+.+|++.+|... ...+..+.+||..+|.|+||.|+++||+..|.-++.+-.
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~~~~ 86 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAVACH 86 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 4567889998 8888987 99999999999764 567899999999999999999999999999988887743
No 26
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.28 E-value=2e-06 Score=86.40 Aligned_cols=65 Identities=20% Similarity=0.303 Sum_probs=59.9
Q ss_pred ccHHHHHHHHHhhCCCCCCccCHHHHHHHHHhC--CCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHH
Q 002980 4 PNQDQFESFFRRADLDGDGRISGAEAVAFFQGS--NLPKQVLAQIWMHADHNHTSYLGRQEFYNALK 68 (861)
Q Consensus 4 ~e~~~y~~iF~~~D~DgDG~ISg~E~~~~f~~S--gLp~~~L~qIW~laD~d~DG~Ls~~EF~~Al~ 68 (861)
...+.++..|+.+|.|+||+|+..|++.+++.- .++++.+..++..+|.|+||+|++++|+.++.
T Consensus 89 ~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 89 DKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIK 155 (160)
T ss_pred CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHh
Confidence 456889999999999999999999999999864 58999999999999999999999999998753
No 27
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.26 E-value=4.5e-06 Score=75.94 Aligned_cols=67 Identities=18% Similarity=0.313 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhC-CCCCC-ccCHHHHHHHHHh-----cC--CCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHH
Q 002980 406 IQKYSKVFMEVD-TDRDG-RITGEQARNLFMS-----WR--LPREVLKQVWDLSDQDSDSMLSLREFCFALYLMER 472 (861)
Q Consensus 406 k~~Y~~iF~~lD-~d~dG-~Isg~ea~~~f~k-----sg--Lp~e~L~~IW~LaD~d~dG~LdkdEF~vAMhLI~~ 472 (861)
...+.++|..+| +|++| +|+.++++.+|.. .| .+.+++..++..+|.|+||+|+++||+..|.-+..
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~~ 82 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVTT 82 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 467899999998 89999 5999999999998 54 67888999999999999999999999876655443
No 28
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.23 E-value=4.9e-06 Score=74.56 Aligned_cols=69 Identities=17% Similarity=0.196 Sum_probs=59.5
Q ss_pred cHHHHHHHHHhhCC--CCCCccCHHHHHHHHHh-CC--C----CHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHH
Q 002980 5 NQDQFESFFRRADL--DGDGRISGAEAVAFFQG-SN--L----PKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVA 73 (861)
Q Consensus 5 e~~~y~~iF~~~D~--DgDG~ISg~E~~~~f~~-Sg--L----p~~~L~qIW~laD~d~DG~Ls~~EF~~Al~Li~~a 73 (861)
+...++.+|..+|. |++|+|+..|+..+|+. .| + ....+.+||..+|.+++|.|+++||+..|.-.+.+
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~~~ 83 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLAVA 83 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHHHH
Confidence 45678999999999 89999999999999965 33 3 48899999999999999999999999987766443
No 29
>PTZ00183 centrin; Provisional
Probab=98.23 E-value=5.4e-06 Score=80.20 Aligned_cols=71 Identities=20% Similarity=0.232 Sum_probs=65.9
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcC--CCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHH
Q 002980 400 KMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWR--LPREVLKQVWDLSDQDSDSMLSLREFCFALYLM 470 (861)
Q Consensus 400 ~ISpedk~~Y~~iF~~lD~d~dG~Isg~ea~~~f~ksg--Lp~e~L~~IW~LaD~d~dG~LdkdEF~vAMhLI 470 (861)
.++++++.++..+|..+|++++|+|+..+++.+|...| +....+..+|..+|.+++|.|+++||+.+++.+
T Consensus 10 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 82 (158)
T PTZ00183 10 GLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKK 82 (158)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHH
Confidence 58899999999999999999999999999999998754 788999999999999999999999999988754
No 30
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.23 E-value=6.9e-06 Score=73.58 Aligned_cols=69 Identities=14% Similarity=0.259 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhhCC--CCCCccCHHHHHHHHHh-cC--C----CHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHH
Q 002980 403 PSDIQKYSKVFMEVDT--DRDGRITGEQARNLFMS-WR--L----PREVLKQVWDLSDQDSDSMLSLREFCFALYLME 471 (861)
Q Consensus 403 pedk~~Y~~iF~~lD~--d~dG~Isg~ea~~~f~k-sg--L----p~e~L~~IW~LaD~d~dG~LdkdEF~vAMhLI~ 471 (861)
++++..+..+|..+|+ |++|+|+.++++.+|.. .| + ..+.+..||...|.+++|+|+++||+..|.-+.
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 4678889999999999 89999999999999975 33 3 489999999999999999999999988766543
No 31
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.18 E-value=5.1e-06 Score=79.47 Aligned_cols=60 Identities=15% Similarity=0.253 Sum_probs=53.4
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHH
Q 002980 6 QDQFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNAL 67 (861)
Q Consensus 6 ~~~y~~iF~~~D~DgDG~ISg~E~~~~f~~SgLp~~~L~qIW~laD~d~DG~Ls~~EF~~Al 67 (861)
.......|..+|.|+||+|+.+|+..++ ......-+..+++.+|.|+||+|+++||+..+
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR--LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH--ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 3457889999999999999999999887 45566778999999999999999999999986
No 32
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.16 E-value=6.9e-06 Score=74.53 Aligned_cols=67 Identities=12% Similarity=0.272 Sum_probs=58.6
Q ss_pred HHHHHHHHhhC-CCCCCc-cCHHHHHHHHHh-c------CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHH
Q 002980 407 QKYSKVFMEVD-TDRDGR-ITGEQARNLFMS-W------RLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMERY 473 (861)
Q Consensus 407 ~~Y~~iF~~lD-~d~dG~-Isg~ea~~~f~k-s------gLp~e~L~~IW~LaD~d~dG~LdkdEF~vAMhLI~~~ 473 (861)
..+.++|..+| ++++|+ |+..+++.+|.. . ..+.+.+.+|+..+|.|++|.|+++||+.+|..+..+
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~~ 84 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVA 84 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHH
Confidence 57899999997 999995 999999999975 3 2478999999999999999999999999888766544
No 33
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.16 E-value=6.7e-06 Score=75.00 Aligned_cols=66 Identities=12% Similarity=0.199 Sum_probs=57.5
Q ss_pred HHHHHHHHHhhCC-CC-CCccCHHHHHHHHHh-c------CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHH
Q 002980 406 IQKYSKVFMEVDT-DR-DGRITGEQARNLFMS-W------RLPREVLKQVWDLSDQDSDSMLSLREFCFALYLME 471 (861)
Q Consensus 406 k~~Y~~iF~~lD~-d~-dG~Isg~ea~~~f~k-s------gLp~e~L~~IW~LaD~d~dG~LdkdEF~vAMhLI~ 471 (861)
...+..+|..+|. |+ +|+|+.++++.+|.. . +++.+.+..|++.+|.+++|.|+++||+.+|.-+-
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 5678999999997 87 699999999999875 2 56889999999999999999999999997766543
No 34
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.16 E-value=8.3e-06 Score=80.36 Aligned_cols=71 Identities=20% Similarity=0.271 Sum_probs=63.3
Q ss_pred cHHHHHHHHHhhCCCCCCccCHHHHHHHHHhCC--CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhc
Q 002980 5 NQDQFESFFRRADLDGDGRISGAEAVAFFQGSN--LPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQS 75 (861)
Q Consensus 5 e~~~y~~iF~~~D~DgDG~ISg~E~~~~f~~Sg--Lp~~~L~qIW~laD~d~DG~Ls~~EF~~Al~Li~~aQ~ 75 (861)
+...|+.+|..+|.|+||+|+..|+..+++..| .+...+..|+..+|.|+||.|+++||+..|........
T Consensus 6 ~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~ 78 (151)
T KOG0027|consen 6 QILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKT 78 (151)
T ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccc
Confidence 457899999999999999999999999998765 56999999999999999999999999999876665533
No 35
>PTZ00184 calmodulin; Provisional
Probab=98.13 E-value=1.1e-05 Score=76.88 Aligned_cols=71 Identities=20% Similarity=0.318 Sum_probs=64.7
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcC--CCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHH
Q 002980 400 KMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWR--LPREVLKQVWDLSDQDSDSMLSLREFCFALYLM 470 (861)
Q Consensus 400 ~ISpedk~~Y~~iF~~lD~d~dG~Isg~ea~~~f~ksg--Lp~e~L~~IW~LaD~d~dG~LdkdEF~vAMhLI 470 (861)
.++.+++.++..+|..+|.+++|.|+..+++.++...+ +..+.+..+|+++|.+++|.|+++||+.+|+..
T Consensus 4 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARK 76 (149)
T ss_pred ccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHh
Confidence 46789999999999999999999999999999888654 678899999999999999999999999988764
No 36
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.12 E-value=1.3e-05 Score=73.35 Aligned_cols=68 Identities=10% Similarity=0.252 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhC-CCCCC-ccCHHHHHHHHHh------c-CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHH
Q 002980 406 IQKYSKVFMEVD-TDRDG-RITGEQARNLFMS------W-RLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMERY 473 (861)
Q Consensus 406 k~~Y~~iF~~lD-~d~dG-~Isg~ea~~~f~k------s-gLp~e~L~~IW~LaD~d~dG~LdkdEF~vAMhLI~~~ 473 (861)
...+.++|..+| +|++| +|+..|++.+|.+ . ......+.+|..-+|.|+||+|+++||+.+|.-+..+
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~~ 85 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTVA 85 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHH
Confidence 467888999998 78998 5999999999965 2 3477899999999999999999999998887655443
No 37
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.09 E-value=1.7e-05 Score=72.18 Aligned_cols=66 Identities=11% Similarity=0.223 Sum_probs=56.9
Q ss_pred HHHHHHHHhhCC-CC-CCccCHHHHHHHHHh---c--CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHH
Q 002980 407 QKYSKVFMEVDT-DR-DGRITGEQARNLFMS---W--RLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMER 472 (861)
Q Consensus 407 ~~Y~~iF~~lD~-d~-dG~Isg~ea~~~f~k---s--gLp~e~L~~IW~LaD~d~dG~LdkdEF~vAMhLI~~ 472 (861)
...-.+|.++|. ++ +|+|+.+|++.+|.+ . +++.+++.+|+.-+|.|++|+|+++||+..|.-+.+
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~ 82 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALAL 82 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHH
Confidence 456788999997 77 899999999999963 2 589999999999999999999999999877765544
No 38
>PTZ00183 centrin; Provisional
Probab=98.08 E-value=1e-05 Score=78.33 Aligned_cols=66 Identities=18% Similarity=0.281 Sum_probs=59.1
Q ss_pred ccHHHHHHHHHhhCCCCCCccCHHHHHHHHHhCC--CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHH
Q 002980 4 PNQDQFESFFRRADLDGDGRISGAEAVAFFQGSN--LPKQVLAQIWMHADHNHTSYLGRQEFYNALKL 69 (861)
Q Consensus 4 ~e~~~y~~iF~~~D~DgDG~ISg~E~~~~f~~Sg--Lp~~~L~qIW~laD~d~DG~Ls~~EF~~Al~L 69 (861)
.+...+..+|..+|.|++|+|+..|+..+|...| ++...+..+|..+|.+++|.|+++||+.++..
T Consensus 14 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 81 (158)
T PTZ00183 14 DQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTK 81 (158)
T ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence 3456789999999999999999999999998765 68889999999999999999999999988653
No 39
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.07 E-value=1.5e-05 Score=78.52 Aligned_cols=75 Identities=21% Similarity=0.301 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcC--CCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHhc
Q 002980 401 MKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWR--LPREVLKQVWDLSDQDSDSMLSLREFCFALYLMERYRE 475 (861)
Q Consensus 401 ISpedk~~Y~~iF~~lD~d~dG~Isg~ea~~~f~ksg--Lp~e~L~~IW~LaD~d~dG~LdkdEF~vAMhLI~~~~~ 475 (861)
++.++...|.++|..+|+|++|+|+..++..+|...| .+...|..|.+-+|.|++|.|+++||+..|........
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~ 78 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKT 78 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccc
Confidence 5778899999999999999999999999999999875 56999999999999999999999999998887665543
No 40
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.05 E-value=2.1e-05 Score=71.79 Aligned_cols=69 Identities=19% Similarity=0.205 Sum_probs=59.0
Q ss_pred HHHHHHHHHHh-hCCCCCC-ccCHHHHHHHHHhc-------CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHH
Q 002980 405 DIQKYSKVFME-VDTDRDG-RITGEQARNLFMSW-------RLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMERY 473 (861)
Q Consensus 405 dk~~Y~~iF~~-lD~d~dG-~Isg~ea~~~f~ks-------gLp~e~L~~IW~LaD~d~dG~LdkdEF~vAMhLI~~~ 473 (861)
-......+|.. .|++++| +|+.+|++.+|.+- +.....+.+||..+|.|+||.|+++||+..|.-+..+
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~~ 84 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAVA 84 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHH
Confidence 35678899999 7788876 99999999999864 5778999999999999999999999998877665443
No 41
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.05 E-value=9.7e-06 Score=81.56 Aligned_cols=65 Identities=25% Similarity=0.353 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHH
Q 002980 404 SDIQKYSKVFMEVDTDRDGRITGEQARNLFMSW--RLPREVLKQVWDLSDQDSDSMLSLREFCFALY 468 (861)
Q Consensus 404 edk~~Y~~iF~~lD~d~dG~Isg~ea~~~f~ks--gLp~e~L~~IW~LaD~d~dG~LdkdEF~vAMh 468 (861)
....++...|+.+|+|++|+|+..+++.++... +++.++++.+.+.+|.|+||+|++++|+-++.
T Consensus 89 ~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 89 DKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIK 155 (160)
T ss_pred CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHh
Confidence 446789999999999999999999999999976 69999999999999999999999999997653
No 42
>PRK09039 hypothetical protein; Validated
Probab=98.00 E-value=0.00028 Score=79.12 Aligned_cols=122 Identities=13% Similarity=0.102 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhH-------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 599 SREKIEFYRSKMQELVLYKSRCDNRLN-------EITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQE 671 (861)
Q Consensus 599 sree~e~LrsQlQEL~~~Ksr~e~~L~-------ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~ 671 (861)
++.++..++.++..++..+.+++..+. +...+...+..++...+..|.+...+|..+.+||..++..|..++.
T Consensus 79 l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~ 158 (343)
T PRK09039 79 LQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEA 158 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444466666666666666666655433 2334444455556666666666665565555555555555555555
Q ss_pred HHHHHHHHHHHHhccCcchhhHHHHHHHH----HHHHHHHHHHHHHHhH-----hcCcccc
Q 002980 672 RKMELHQAIVNMERGGSADGLLQVRADRI----QSDLEELLKALTERCK-----KHGIDVK 723 (861)
Q Consensus 672 EL~eLqqeIqkLe~~~~~n~~Lkera~~i----n~el~eL~~~L~e~~~-----~~g~~~~ 723 (861)
+|..+++... +.+.+.+.|+.+++.. ..+|+.++..+-.+.+ +.||+..
T Consensus 159 ~L~~ae~~~~---~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~~~l~~~~~~~~~iri~ 216 (343)
T PRK09039 159 ALDASEKRDR---ESQAKIADLGRRLNVALAQRVQELNRYRSEFFGRLREILGDREGIRIV 216 (343)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCcEEE
Confidence 5555555443 2223333444444443 3445555555533332 3455555
No 43
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.00 E-value=2.4e-05 Score=62.36 Aligned_cols=59 Identities=25% Similarity=0.396 Sum_probs=53.7
Q ss_pred HHHHHHhhCCCCCCccCHHHHHHHHHhC--CCCHHHHHHHHHHhCCCCCCCcCHHHHHHHH
Q 002980 9 FESFFRRADLDGDGRISGAEAVAFFQGS--NLPKQVLAQIWMHADHNHTSYLGRQEFYNAL 67 (861)
Q Consensus 9 y~~iF~~~D~DgDG~ISg~E~~~~f~~S--gLp~~~L~qIW~laD~d~DG~Ls~~EF~~Al 67 (861)
+..+|+.+|.|++|.|+..|+..++... ..+...+..+|..+|.+++|.|+++||+..+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4678999999999999999999999875 5788899999999999999999999998754
No 44
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.00 E-value=1.2e-05 Score=65.55 Aligned_cols=49 Identities=18% Similarity=0.365 Sum_probs=44.7
Q ss_pred CCCccCHHHHHHHHHhC--C-CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHH
Q 002980 20 GDGRISGAEAVAFFQGS--N-LPKQVLAQIWMHADHNHTSYLGRQEFYNALK 68 (861)
Q Consensus 20 gDG~ISg~E~~~~f~~S--g-Lp~~~L~qIW~laD~d~DG~Ls~~EF~~Al~ 68 (861)
.+|+|+.++++.+|... . ++++.+..|+..+|.|+||+|+++||+.+|.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 37999999999999653 5 8899999999999999999999999999875
No 45
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.99 E-value=2.1e-05 Score=75.27 Aligned_cols=65 Identities=20% Similarity=0.416 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHH
Q 002980 401 MKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCFAL 467 (861)
Q Consensus 401 ISpedk~~Y~~iF~~lD~d~dG~Isg~ea~~~f~ksgLp~e~L~~IW~LaD~d~dG~LdkdEF~vAM 467 (861)
+.+..+....-.|..+|+|+||+|+.+|+..++ ......-+..+...+|.|+||.|+++||+.++
T Consensus 42 ~~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 42 LYPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR--LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred hhHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 356778888999999999999999999999887 45557888999999999999999999999887
No 46
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.99 E-value=2.1e-05 Score=62.60 Aligned_cols=59 Identities=24% Similarity=0.394 Sum_probs=54.0
Q ss_pred HHHHHHhhCCCCCCccCHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCccCHHHHHHHH
Q 002980 409 YSKVFMEVDTDRDGRITGEQARNLFMSW--RLPREVLKQVWDLSDQDSDSMLSLREFCFAL 467 (861)
Q Consensus 409 Y~~iF~~lD~d~dG~Isg~ea~~~f~ks--gLp~e~L~~IW~LaD~d~dG~LdkdEF~vAM 467 (861)
...+|..+|.+++|.|+..+++.++... ..+.+.+..+|..+|.+++|.|+++||+..+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4678999999999999999999999876 6889999999999999999999999998754
No 47
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.96 E-value=1.5e-05 Score=82.11 Aligned_cols=76 Identities=25% Similarity=0.346 Sum_probs=67.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHH--HHHHHHhhCCCCCCccCHHHHHHHHHHH
Q 002980 393 NSQVPWPKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREV--LKQVWDLSDQDSDSMLSLREFCFALYLM 470 (861)
Q Consensus 393 ~~~~~Wp~ISpedk~~Y~~iF~~lD~d~dG~Isg~ea~~~f~ksgLp~e~--L~~IW~LaD~d~dG~LdkdEF~vAMhLI 470 (861)
...+.| .+..++..|..+|.++|.|.||||+..||+-+|.+.|.|+.- |+.++.-+|-|.||+|++.||++..+..
T Consensus 87 yteF~e--FsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 87 YTEFSE--FSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred hhhhhH--HHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 345667 899999999999999999999999999999999999999775 5789999999999999999998766554
No 48
>PTZ00184 calmodulin; Provisional
Probab=97.96 E-value=2.5e-05 Score=74.40 Aligned_cols=66 Identities=20% Similarity=0.261 Sum_probs=58.5
Q ss_pred cHHHHHHHHHhhCCCCCCccCHHHHHHHHHhCC--CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHH
Q 002980 5 NQDQFESFFRRADLDGDGRISGAEAVAFFQGSN--LPKQVLAQIWMHADHNHTSYLGRQEFYNALKLV 70 (861)
Q Consensus 5 e~~~y~~iF~~~D~DgDG~ISg~E~~~~f~~Sg--Lp~~~L~qIW~laD~d~DG~Ls~~EF~~Al~Li 70 (861)
+...++.+|..+|.|++|.|+..|+..++...+ +....+..+|..+|.+++|.|+++||+.+|..+
T Consensus 9 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 9 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARK 76 (149)
T ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHh
Confidence 456789999999999999999999999987654 577789999999999999999999999887653
No 49
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=97.93 E-value=2.8e-05 Score=80.26 Aligned_cols=65 Identities=25% Similarity=0.384 Sum_probs=53.9
Q ss_pred cHHHHHHHHHhhCCCCCCccCHHHHHHHHHh---CCCC--HH----HHHHHHHHhCCCCCCCcCHHHHHHHHHH
Q 002980 5 NQDQFESFFRRADLDGDGRISGAEAVAFFQG---SNLP--KQ----VLAQIWMHADHNHTSYLGRQEFYNALKL 69 (861)
Q Consensus 5 e~~~y~~iF~~~D~DgDG~ISg~E~~~~f~~---SgLp--~~----~L~qIW~laD~d~DG~Ls~~EF~~Al~L 69 (861)
...+.+-.|+.||.|+||+|+.+|+..++.. .+.+ ++ .+.+++..+|.|+||+|+++||+.++.-
T Consensus 102 ~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 102 KREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 3457888999999999999999999888764 4566 44 4566788999999999999999999643
No 50
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.91 E-value=0.00041 Score=77.18 Aligned_cols=139 Identities=14% Similarity=0.177 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 588 KVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALA----DRREAETLGKKYEEKYKQVAEIASKLTIED 663 (861)
Q Consensus 588 ela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~----~kreIesLr~k~ee~~kqv~elEsQL~~lE 663 (861)
.+..|......+.+..+.+...+.+|..++..+..++..+++...+ ...+++.+|+++.+...+|......|..++
T Consensus 157 ~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~ 236 (325)
T PF08317_consen 157 NLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQ 236 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444444444444444444444322221 134444555555555555554444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHH-HHHHHHHHHHHHHHHhHhcCccccccc
Q 002980 664 AKFRELQERKMELHQAIVNMERGGSADGLLQVRADR-IQSDLEELLKALTERCKKHGIDVKSHA 726 (861)
Q Consensus 664 a~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~-in~el~eL~~~L~e~~~~~g~~~~~~~ 726 (861)
.++..++.++.++.+++.+|...+++.+...++.+. ...++.+|+..+.-.|+.+|+++....
T Consensus 237 ~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~gw~~~~~~ 300 (325)
T PF08317_consen 237 EELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLTGWKIVSIS 300 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHCcEEEEEe
Confidence 444444444444444444444444433333333333 567888999999999999999885443
No 51
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.85 E-value=3.1e-05 Score=79.73 Aligned_cols=67 Identities=22% Similarity=0.284 Sum_probs=60.4
Q ss_pred ccHHHHHHHHHhhCCCCCCccCHHHHHHHHHhCCCCHHH--HHHHHHHhCCCCCCCcCHHHHHHHHHHH
Q 002980 4 PNQDQFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQV--LAQIWMHADHNHTSYLGRQEFYNALKLV 70 (861)
Q Consensus 4 ~e~~~y~~iF~~~D~DgDG~ISg~E~~~~f~~SgLp~~~--L~qIW~laD~d~DG~Ls~~EF~~Al~Li 70 (861)
+++..|..+|..+|.|.||+|+..|++.++.+-|.|..- |..++..+|-|.||.|++.||..-.+.+
T Consensus 96 kqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 96 KQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 467889999999999999999999999999999998876 6789999999999999999998765544
No 52
>PRK11637 AmiB activator; Provisional
Probab=97.79 E-value=0.0012 Score=75.92 Aligned_cols=14 Identities=21% Similarity=0.173 Sum_probs=8.0
Q ss_pred CccccCCcccCCCc
Q 002980 809 ERAFESESAYTHSE 822 (861)
Q Consensus 809 ~~~~~~~~~~~~~~ 822 (861)
+|+-+--+.|.|-.
T Consensus 366 ~hg~g~~t~Y~~~~ 379 (428)
T PRK11637 366 EHGKGDMSLYGYNQ 379 (428)
T ss_pred EeCCCcEEEccCCC
Confidence 45555556677643
No 53
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.75 E-value=5.4e-05 Score=61.71 Aligned_cols=49 Identities=29% Similarity=0.477 Sum_probs=44.8
Q ss_pred CCCccCHHHHHHHHHhc--C-CCHHHHHHHHHhhCCCCCCccCHHHHHHHHH
Q 002980 420 RDGRITGEQARNLFMSW--R-LPREVLKQVWDLSDQDSDSMLSLREFCFALY 468 (861)
Q Consensus 420 ~dG~Isg~ea~~~f~ks--g-Lp~e~L~~IW~LaD~d~dG~LdkdEF~vAMh 468 (861)
.+|+|+.++++.+|... + ++.+++..|+..+|.|++|+|+++||+.+|.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 37999999999999754 5 8899999999999999999999999999875
No 54
>PRK11637 AmiB activator; Provisional
Probab=97.74 E-value=0.0016 Score=74.98 Aligned_cols=19 Identities=11% Similarity=0.281 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 002980 691 GLLQVRADRIQSDLEELLK 709 (861)
Q Consensus 691 ~~Lkera~~in~el~eL~~ 709 (861)
..|+.....++..|++|+.
T Consensus 236 ~~l~~~~~~L~~~I~~l~~ 254 (428)
T PRK11637 236 SELRANESRLRDSIARAER 254 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 55
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.71 E-value=0.00015 Score=65.85 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhCCC--CCCccCHHHHHHHHHhC---CCC----HHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHH
Q 002980 6 QDQFESFFRRADLD--GDGRISGAEAVAFFQGS---NLP----KQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVA 73 (861)
Q Consensus 6 ~~~y~~iF~~~D~D--gDG~ISg~E~~~~f~~S---gLp----~~~L~qIW~laD~d~DG~Ls~~EF~~Al~Li~~a 73 (861)
......+|..++.+ .+|+|+.+|++.+|... .++ +..+..||..+|.|+||.|+++||+..|..++.+
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~~ 83 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGVA 83 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHH
Confidence 34567889988866 47999999999999742 244 8999999999999999999999999998877665
No 56
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.64 E-value=0.0015 Score=79.50 Aligned_cols=50 Identities=20% Similarity=0.361 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 610 MQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKL 659 (861)
Q Consensus 610 lQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL 659 (861)
+++|......+++++.++...+.+++..++.|++++.++.++-..+|.||
T Consensus 462 L~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL 511 (697)
T PF09726_consen 462 LSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQL 511 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555555555555555555555555555555555555
No 57
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.63 E-value=0.0017 Score=79.01 Aligned_cols=127 Identities=12% Similarity=0.178 Sum_probs=86.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHH---------HHHHHH-HHHH
Q 002980 584 TAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGK---------KYEEKY-KQVA 653 (861)
Q Consensus 584 elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~---------k~ee~~-kqv~ 653 (861)
+++.++.+|.+..+.=|..+..|+++|.+....|..++..|.+-+ +...+.+...-|. ++.+.. ....
T Consensus 471 ~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eEr--k~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~ 548 (697)
T PF09726_consen 471 QLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEER--KARKEEEEKAARALAQAQATRQECAESCRQRRR 548 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHhhhhccccchhccchhHHHHHHHHH
Confidence 333444444333333344477899999999999999999998643 3322222222232 555533 4667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CcchhhHHHHHHHHHHHHHHHHHHHH
Q 002980 654 EIASKLTIEDAKFRELQERKMELHQAIVNMERG----GSADGLLQVRADRIQSDLEELLKALT 712 (861)
Q Consensus 654 elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~----~~~n~~Lkera~~in~el~eL~~~L~ 712 (861)
++|..+..++.+|+.+++++..|+.++++|..- ..+.+.|-.-+..+|.+-..|++.|.
T Consensus 549 ~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLs 611 (697)
T PF09726_consen 549 QLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLS 611 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 888888888999999999999999888755443 34677888888899999888888884
No 58
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.62 E-value=0.0019 Score=81.79 Aligned_cols=95 Identities=17% Similarity=0.206 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 587 KKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKF 666 (861)
Q Consensus 587 kela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L 666 (861)
.++..+..++..++.++..++.+++.++....++..++.++..++...+.+++.+.+++++..++++.++.++..++..+
T Consensus 805 ~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 884 (1164)
T TIGR02169 805 EEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRL 884 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333344444333333334444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHH
Q 002980 667 RELQERKMELHQAIV 681 (861)
Q Consensus 667 ~d~Q~EL~eLqqeIq 681 (861)
..++.++.++..++.
T Consensus 885 ~~l~~~~~~l~~~~~ 899 (1164)
T TIGR02169 885 GDLKKERDELEAQLR 899 (1164)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 59
>PRK09039 hypothetical protein; Validated
Probab=97.62 E-value=0.0015 Score=73.44 Aligned_cols=66 Identities=15% Similarity=0.189 Sum_probs=31.3
Q ss_pred HHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 616 YKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (861)
Q Consensus 616 ~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIq 681 (861)
.-..+..+|.+.+...++..++|..|+++|+...+|+..++..|..+|....+++.++.+|+++|+
T Consensus 117 ~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 117 RAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLN 182 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444455555444444444444444444444444444444444444444
No 60
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.60 E-value=0.0022 Score=81.14 Aligned_cols=25 Identities=8% Similarity=0.008 Sum_probs=14.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Q 002980 689 ADGLLQVRADRIQSDLEELLKALTE 713 (861)
Q Consensus 689 ~n~~Lkera~~in~el~eL~~~L~e 713 (861)
+...|+.++..++.++++++..+.+
T Consensus 435 ~~~~l~~~~~~~~~~l~~l~~~~~~ 459 (1164)
T TIGR02169 435 KINELEEEKEDKALEIKKQEWKLEQ 459 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555666666665554
No 61
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.58 E-value=0.0051 Score=65.85 Aligned_cols=131 Identities=15% Similarity=0.209 Sum_probs=83.7
Q ss_pred hhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhH---------HHHHHHHHHHHHHHHH
Q 002980 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADR---------REAETLGKKYEEKYKQ 651 (861)
Q Consensus 581 E~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~k---------reIesLr~k~ee~~kq 651 (861)
.+....+.|+.+.+++...++.+..++..+++|.++.++.+.+|.++++++...+ +++..|..+++...++
T Consensus 25 ~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r 104 (239)
T COG1579 25 RIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKER 104 (239)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 3445556667777777777777778888888888888888888887777766543 3444566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--------chhhHHHHHHHHHHHHHHHHHHH
Q 002980 652 VAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGS--------ADGLLQVRADRIQSDLEELLKAL 711 (861)
Q Consensus 652 v~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~--------~n~~Lkera~~in~el~eL~~~L 711 (861)
..+++.+|..+...+..++.++..|+.++.+++.... +...+.+....+.++.++|+..|
T Consensus 105 ~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l 172 (239)
T COG1579 105 INSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKL 172 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6666666666655555566655555555555544333 33445555555566666776655
No 62
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=97.56 E-value=0.00013 Score=75.73 Aligned_cols=62 Identities=29% Similarity=0.490 Sum_probs=46.1
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHHh----CCC---------CHHHHHHHHHHhCCCCCCCcCHHHHHHHH
Q 002980 6 QDQFESFFRRADLDGDGRISGAEAVAFFQG----SNL---------PKQVLAQIWMHADHNHTSYLGRQEFYNAL 67 (861)
Q Consensus 6 ~~~y~~iF~~~D~DgDG~ISg~E~~~~f~~----SgL---------p~~~L~qIW~laD~d~DG~Ls~~EF~~Al 67 (861)
.+..+-.|+.+|.|+||+|+..|+..+++. .|- ++....+||+.+|.|+||.|+.+||..++
T Consensus 99 eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~ 173 (193)
T KOG0044|consen 99 EEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGC 173 (193)
T ss_pred HHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHh
Confidence 344555688888888888888887666542 232 56778888888888888888888888874
No 63
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.56 E-value=0.00033 Score=63.54 Aligned_cols=67 Identities=16% Similarity=0.279 Sum_probs=56.1
Q ss_pred HHHHHHHHHhhCCC--CCCccCHHHHHHHHHh-c--CCC----HHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHH
Q 002980 406 IQKYSKVFMEVDTD--RDGRITGEQARNLFMS-W--RLP----REVLKQVWDLSDQDSDSMLSLREFCFALYLMER 472 (861)
Q Consensus 406 k~~Y~~iF~~lD~d--~dG~Isg~ea~~~f~k-s--gLp----~e~L~~IW~LaD~d~dG~LdkdEF~vAMhLI~~ 472 (861)
......+|.+++.. .+|+|+.++++.+|.+ . .++ .+++..||..+|.|++|.|+++||+..|.-+..
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~ 82 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGV 82 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 45677889999854 4799999999999974 2 255 899999999999999999999999988775543
No 64
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=97.54 E-value=0.0024 Score=70.94 Aligned_cols=130 Identities=16% Similarity=0.211 Sum_probs=76.3
Q ss_pred hHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 583 TTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDN----RLNEITERALADRREAETLGKKYEEKYKQVAEIASK 658 (861)
Q Consensus 583 ~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~----~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQ 658 (861)
..+.+.++.++.-+-+++++.+.|+.++.+|..-+.++++ +|+.++++ |..+..+++.+.+++.+++.+
T Consensus 161 ~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~-------l~~~~~ei~~~~~~l~e~~~~ 233 (312)
T smart00787 161 KLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEK-------LKKLLQEIMIKVKKLEELEEE 233 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555556666666666555555432 44443333 344444444444666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhHhcCcccccc
Q 002980 659 LTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGIDVKSH 725 (861)
Q Consensus 659 L~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L~e~~~~~g~~~~~~ 725 (861)
|..++..+++...++.+++.+|++++.... +.=.=...|+..|+..+.-..+.+|+++...
T Consensus 234 l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~------~~r~~t~~Ei~~Lk~~~~~Le~l~g~~~~~~ 294 (312)
T smart00787 234 LQELESKIEDLTNKKSELNTEIAEAEKKLE------QCRGFTFKEIEKLKEQLKLLQSLTGWKITKL 294 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHhCCeeEec
Confidence 777777777777777777777775544221 1111234577788888888888899886644
No 65
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.52 E-value=0.0032 Score=79.35 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=9.6
Q ss_pred HHhCCCCCCCcCHHHHHHHHHHH
Q 002980 48 MHADHNHTSYLGRQEFYNALKLV 70 (861)
Q Consensus 48 ~laD~d~DG~Ls~~EF~~Al~Li 70 (861)
.++..||-| |.-++.||.++
T Consensus 27 ~i~G~NGsG---KS~ll~ai~~~ 46 (1179)
T TIGR02168 27 GIVGPNGCG---KSNIVDAIRWV 46 (1179)
T ss_pred EEECCCCCC---hhHHHHHHHHH
Confidence 344445544 44455554444
No 66
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.51 E-value=0.0038 Score=73.42 Aligned_cols=82 Identities=16% Similarity=0.216 Sum_probs=38.4
Q ss_pred hhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLT 660 (861)
Q Consensus 581 E~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~ 660 (861)
|-.+|.++...|+.++..++.+++.++..|........++.....++......+..+.+.|..++++..+.|.++|+.|.
T Consensus 151 E~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~ 230 (546)
T PF07888_consen 151 EKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIK 230 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455554444444444444444333333333333334333444445555555555555555555555554
Q ss_pred HH
Q 002980 661 IE 662 (861)
Q Consensus 661 ~l 662 (861)
.+
T Consensus 231 ~l 232 (546)
T PF07888_consen 231 TL 232 (546)
T ss_pred HH
Confidence 44
No 67
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.43 E-value=0.0052 Score=65.75 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=11.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH
Q 002980 689 ADGLLQVRADRIQSDLEELLKAL 711 (861)
Q Consensus 689 ~n~~Lkera~~in~el~eL~~~L 711 (861)
+...|++++.++...+.+++..+
T Consensus 125 ~i~~l~~~~~~~e~~~~e~~~~~ 147 (239)
T COG1579 125 EIEDLKERLERLEKNLAEAEARL 147 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555554444
No 68
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.42 E-value=0.0026 Score=78.81 Aligned_cols=138 Identities=15% Similarity=0.206 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHH-------HHHHH
Q 002980 592 REKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKY-EEKYKQVAEIASK-------LTIED 663 (861)
Q Consensus 592 Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~-ee~~kqv~elEsQ-------L~~lE 663 (861)
.+.+++..++.+..++..+.++.....++++++++++..+-.+++.|..++++. .+..+++.++|.+ +..+|
T Consensus 335 ~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e 414 (1074)
T KOG0250|consen 335 QDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLE 414 (1074)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344555566667777777777777777777777777766666666666555544 2233333444444 34444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc----cCcchhhHHHHHHHHHHHHHHHHHHHHHHhHhcCccccccceeec
Q 002980 664 AKFRELQERKMELHQAIVNMER----GGSADGLLQVRADRIQSDLEELLKALTERCKKHGIDVKSHAVIEL 730 (861)
Q Consensus 664 a~L~d~Q~EL~eLqqeIqkLe~----~~~~n~~Lkera~~in~el~eL~~~L~e~~~~~g~~~~~~~~~e~ 730 (861)
..++.++.|++++.+++...++ ...+...|+..|+.++.+|..|++.=..+...|| +-++..|.++
T Consensus 415 ~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG-~~m~~lL~~I 484 (1074)
T KOG0250|consen 415 EQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDKVSAFG-PNMPQLLRAI 484 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcc-hhhHHHHHHH
Confidence 4444444444444444442222 2234556777788888888888887788888888 6666555544
No 69
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.40 E-value=0.0052 Score=76.23 Aligned_cols=130 Identities=14% Similarity=0.156 Sum_probs=63.2
Q ss_pred hhhHHhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHH--HHH-HHHHHHHHHH
Q 002980 581 DSTTAGKKVDEREKVILD-------SREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRRE--AET-LGKKYEEKYK 650 (861)
Q Consensus 581 E~~elekela~Le~qi~~-------sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kre--Ies-Lr~k~ee~~k 650 (861)
++.+++.++.+++++|.. .+..++.++.++.+|.......+.+++...-++.+++.. ... =-.+|+++..
T Consensus 662 ~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ 741 (1074)
T KOG0250|consen 662 EIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLAR 741 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHH
Confidence 455555555555554444 444455555555555555555555554444344333331 000 0013444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 002980 651 QVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTE 713 (861)
Q Consensus 651 qv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L~e 713 (861)
.+.+.+.+|...|+.+.+++.++..++.+.+++++. -+..++.+...+..+++|+..|++
T Consensus 742 ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~---~~~~~~~l~~e~~~l~~l~~el~~ 801 (1074)
T KOG0250|consen 742 EIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEY---YAAGREKLQGEISKLDALKEELKL 801 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 555555566666666666666666666666644332 223334444444444444444443
No 70
>PF14658 EF-hand_9: EF-hand domain
Probab=97.40 E-value=0.00034 Score=60.82 Aligned_cols=59 Identities=12% Similarity=0.233 Sum_probs=53.7
Q ss_pred HHHHhhCCCCCCccCHHHHHHHHHhC---CCCHHHHHHHHHHhCCCCC-CCcCHHHHHHHHHH
Q 002980 11 SFFRRADLDGDGRISGAEAVAFFQGS---NLPKQVLAQIWMHADHNHT-SYLGRQEFYNALKL 69 (861)
Q Consensus 11 ~iF~~~D~DgDG~ISg~E~~~~f~~S---gLp~~~L~qIW~laD~d~D-G~Ls~~EF~~Al~L 69 (861)
..|+.||+++.|+|....++.+|+.. +..+..|..+.+.+|.++. |.|+++.|+..|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 47999999999999999999999864 4578889999999999888 99999999999974
No 71
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.39 E-value=0.0052 Score=68.49 Aligned_cols=78 Identities=28% Similarity=0.363 Sum_probs=37.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-hhhHHHHHHHHHHHHHHHHHH
Q 002980 633 ADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSA-DGLLQVRADRIQSDLEELLKA 710 (861)
Q Consensus 633 ~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~~-n~~Lkera~~in~el~eL~~~ 710 (861)
.++.++..+..+++...+.+.+++.++..++..++.+..++.+|+++|.+++....+ ..--..++..+..++..|+..
T Consensus 213 ~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 213 ALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKL 291 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 344444444444444445555555555555555555555555555555544433331 112334444444444444443
No 72
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.37 E-value=0.0011 Score=61.05 Aligned_cols=67 Identities=10% Similarity=0.180 Sum_probs=56.7
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHh-------CCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHh
Q 002980 7 DQFESFFRRADLDGDGRISGAEAVAFFQG-------SNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQ 74 (861)
Q Consensus 7 ~~y~~iF~~~D~DgDG~ISg~E~~~~f~~-------SgLp~~~L~qIW~laD~d~DG~Ls~~EF~~Al~Li~~aQ 74 (861)
...-.+|..+- ...|.++..|++.++.+ ..-.+..+.+|++.+|.|+||.|+|.||+..+.-+++|-
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~ac 81 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLIAC 81 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHH
Confidence 45667888887 34579999999999753 345789999999999999999999999999999888873
No 73
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.33 E-value=0.0013 Score=71.09 Aligned_cols=79 Identities=20% Similarity=0.273 Sum_probs=55.9
Q ss_pred HHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-chhhHHH
Q 002980 617 KSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGS-ADGLLQV 695 (861)
Q Consensus 617 Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~-~n~~Lke 695 (861)
....+..|+++..... .+..+++....+|+++.+++..++.++...+.++.+|+.+|..|++.|. +++.|++
T Consensus 33 i~~~ds~l~~~~~~~~-------~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~ 105 (265)
T COG3883 33 IQNQDSKLSELQKEKK-------NIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKK 105 (265)
T ss_pred HHhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556665544444 4444444444777777777777777777888888888888888877777 8899999
Q ss_pred HHHHHHH
Q 002980 696 RADRIQS 702 (861)
Q Consensus 696 ra~~in~ 702 (861)
|+|.++.
T Consensus 106 raRAmq~ 112 (265)
T COG3883 106 RARAMQV 112 (265)
T ss_pred HHHHHHH
Confidence 9999875
No 74
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.30 E-value=0.011 Score=69.76 Aligned_cols=12 Identities=25% Similarity=0.714 Sum_probs=7.3
Q ss_pred ccccccchhhhh
Q 002980 739 QEGAGVWDEDWD 750 (861)
Q Consensus 739 ~e~a~~w~e~wd 750 (861)
.|+.+.|+.+=-
T Consensus 349 ke~~~q~~qEk~ 360 (546)
T PF07888_consen 349 KEGRSQWAQEKQ 360 (546)
T ss_pred HHHHHHHHHHHH
Confidence 567777765433
No 75
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.30 E-value=0.013 Score=65.82 Aligned_cols=104 Identities=12% Similarity=0.114 Sum_probs=69.4
Q ss_pred hhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHH
Q 002980 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLG---KKYEEKYKQVAEIAS 657 (861)
Q Consensus 581 E~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr---~k~ee~~kqv~elEs 657 (861)
+...+..+++.+..|.++++.++..|..+..+|+.++..+.++-+++......++.++..|. ++|+++.+.+..-..
T Consensus 131 n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~ 210 (499)
T COG4372 131 NLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRAN 210 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667788888888888888999999999998888888887777744555555554443 446666655555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002980 658 KLTIEDAKFRELQERKMELHQAIVNME 684 (861)
Q Consensus 658 QL~~lEa~L~d~Q~EL~eLqqeIqkLe 684 (861)
.+...+.+|...+..++++.++|+.++
T Consensus 211 a~q~r~~ela~r~aa~Qq~~q~i~qrd 237 (499)
T COG4372 211 AAQARTEELARRAAAAQQTAQAIQQRD 237 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666555555555555333
No 76
>PF14658 EF-hand_9: EF-hand domain
Probab=97.30 E-value=0.00055 Score=59.51 Aligned_cols=59 Identities=14% Similarity=0.186 Sum_probs=54.2
Q ss_pred HHHHhhCCCCCCccCHHHHHHHHHhc---CCCHHHHHHHHHhhCCCCC-CccCHHHHHHHHHH
Q 002980 411 KVFMEVDTDRDGRITGEQARNLFMSW---RLPREVLKQVWDLSDQDSD-SMLSLREFCFALYL 469 (861)
Q Consensus 411 ~iF~~lD~d~dG~Isg~ea~~~f~ks---gLp~e~L~~IW~LaD~d~d-G~LdkdEF~vAMhL 469 (861)
..|+.||+++.|.|.-..++.+|..- +-..+.|..+.+..|+++. |.|+++.||..|..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 47999999999999999999999964 5678999999999999999 99999999999964
No 77
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=97.29 E-value=0.0007 Score=70.32 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=64.6
Q ss_pred CccHHHHHHHHHhhCCCCCCccCHHHHHHHHHh--CCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhcC
Q 002980 3 GPNQDQFESFFRRADLDGDGRISGAEAVAFFQG--SNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSK 76 (861)
Q Consensus 3 ~~e~~~y~~iF~~~D~DgDG~ISg~E~~~~f~~--SgLp~~~L~qIW~laD~d~DG~Ls~~EF~~Al~Li~~aQ~G 76 (861)
|....+.+.+|+.+|.|+||.|+-.|+...|.. -|-..+-|.=.|++.|.|+||+|+++|++..++-|..-...
T Consensus 60 gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~ 135 (193)
T KOG0044|consen 60 GDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGS 135 (193)
T ss_pred CCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHccc
Confidence 455678899999999999999999998777753 47888889989999999999999999999999988877654
No 78
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.29 E-value=0.00051 Score=78.27 Aligned_cols=56 Identities=27% Similarity=0.344 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHH
Q 002980 6 QDQFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTV 72 (861)
Q Consensus 6 ~~~y~~iF~~~D~DgDG~ISg~E~~~~f~~SgLp~~~L~qIW~laD~d~DG~Ls~~EF~~Al~Li~~ 72 (861)
...++.+|+.+|.|+||+|+.+|+.. +..+|+.+|.|+||.|+++||..+|+-+..
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-----------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-----------SDAVFDALDLNHDGKITPEEMRAGLGAALR 388 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-----------HHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 46789999999999999999999842 578999999999999999999999876653
No 79
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.23 E-value=0.0035 Score=73.77 Aligned_cols=29 Identities=21% Similarity=0.180 Sum_probs=10.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 585 AGKKVDEREKVILDSREKIEFYRSKMQEL 613 (861)
Q Consensus 585 lekela~Le~qi~~sree~e~LrsQlQEL 613 (861)
+++++.++.+++..++.+++.++.++.+|
T Consensus 218 l~~e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 218 KQNKYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 80
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=97.19 E-value=0.013 Score=64.78 Aligned_cols=131 Identities=17% Similarity=0.172 Sum_probs=96.8
Q ss_pred hhHHhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002980 582 STTAGKKVDEREKVILDSREKIE-------FYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAE 654 (861)
Q Consensus 582 ~~elekela~Le~qi~~sree~e-------~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~e 654 (861)
...|++++..|+.+-..+|.+.. .|..+-+.|. .+|-..|.+.+.++..+..+|..-..++..+..+|..
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv---~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~ 238 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLV---LDCVKQLSEANQQIASLSEELARKTEENRRQQEEITS 238 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHH---HHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666665555555544 4444544443 3678888888888888888888888788888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CcchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 002980 655 IASKLTIEDAKFRELQERKMELHQAIVNMERG----GSADGLLQVRADRIQSDLEELLKALTERC 715 (861)
Q Consensus 655 lEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~----~~~n~~Lkera~~in~el~eL~~~L~e~~ 715 (861)
+-++|..++..++..=.|..+|.+-|.....- ..++..||+|+......|.+.++.|....
T Consensus 239 LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 239 LLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999988988888888844332 23778888888888888888888887643
No 81
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.19 E-value=0.00082 Score=76.03 Aligned_cols=69 Identities=23% Similarity=0.326 Sum_probs=61.7
Q ss_pred cHHHHHHHHHhhCCCCCCccCHHHHHHHHHh------CCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHH
Q 002980 5 NQDQFESFFRRADLDGDGRISGAEAVAFFQG------SNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVA 73 (861)
Q Consensus 5 e~~~y~~iF~~~D~DgDG~ISg~E~~~~f~~------SgLp~~~L~qIW~laD~d~DG~Ls~~EF~~Al~Li~~a 73 (861)
++..++.+|+++|.|..|.||.+|++..++- -.++++.+.++-+..|.|+||+|+..||..|.+|+..-
T Consensus 545 ~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvdr~ 619 (631)
T KOG0377|consen 545 NKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVDRR 619 (631)
T ss_pred chhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhcch
Confidence 4567889999999999999999999887652 35899999999999999999999999999999999874
No 82
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.17 E-value=0.00086 Score=75.88 Aligned_cols=70 Identities=23% Similarity=0.348 Sum_probs=61.5
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHH---h---cCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHhc
Q 002980 406 IQKYSKVFMEVDTDRDGRITGEQARNLFM---S---WRLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMERYRE 475 (861)
Q Consensus 406 k~~Y~~iF~~lD~d~dG~Isg~ea~~~f~---k---sgLp~e~L~~IW~LaD~d~dG~LdkdEF~vAMhLI~~~~~ 475 (861)
|..++.||+.+|.|+.|.|+-+|.+.... + --+.++.+.++-+..|.|+||+||+.||+-|.+|+.+.+.
T Consensus 546 ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvdr~~~ 621 (631)
T KOG0377|consen 546 KSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVDRRRS 621 (631)
T ss_pred hhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhcchhh
Confidence 45678899999999999999999887654 2 2588999999999999999999999999999999998653
No 83
>PRK02224 chromosome segregation protein; Provisional
Probab=97.16 E-value=0.017 Score=71.95 Aligned_cols=22 Identities=18% Similarity=0.042 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002980 662 EDAKFRELQERKMELHQAIVNM 683 (861)
Q Consensus 662 lEa~L~d~Q~EL~eLqqeIqkL 683 (861)
++....+++.++.+|+..|..|
T Consensus 618 l~~~~~~~~~~l~~~r~~i~~l 639 (880)
T PRK02224 618 LAELNDERRERLAEKRERKREL 639 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334445555555555544
No 84
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.15 E-value=0.023 Score=56.51 Aligned_cols=122 Identities=20% Similarity=0.204 Sum_probs=56.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 585 AGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDA 664 (861)
Q Consensus 585 lekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa 664 (861)
++.++..++....+...++..|+.+++.|+..-.+++..|.+++...... .......+...+.|..||.+|...+.
T Consensus 19 ~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~----~~~~~~~E~l~rriq~LEeele~ae~ 94 (143)
T PF12718_consen 19 LEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEES----EKRKSNAEQLNRRIQLLEEELEEAEK 94 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 34444444444444444445555555555554444444444443222211 11112222333555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 002980 665 KFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTE 713 (861)
Q Consensus 665 ~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L~e 713 (861)
.|+.+..+|.+.......++ ..-..|..+.......+++|..++.+
T Consensus 95 ~L~e~~ekl~e~d~~ae~~e---Rkv~~le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 95 KLKETTEKLREADVKAEHFE---RKVKALEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred HHHHHHHHHHHHHHHhHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 55555555555444444332 23334555556666666666666554
No 85
>PLN02964 phosphatidylserine decarboxylase
Probab=97.13 E-value=0.00099 Score=80.02 Aligned_cols=62 Identities=19% Similarity=0.219 Sum_probs=47.8
Q ss_pred HHHHHHHhhCCCCCCccCHHHHHHHHHhCC--CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHH
Q 002980 8 QFESFFRRADLDGDGRISGAEAVAFFQGSN--LPKQVLAQIWMHADHNHTSYLGRQEFYNALKL 69 (861)
Q Consensus 8 ~y~~iF~~~D~DgDG~ISg~E~~~~f~~Sg--Lp~~~L~qIW~laD~d~DG~Ls~~EF~~Al~L 69 (861)
+.+.+|+.+|.|+||.|+.+|+..++...+ .+++.+.++|+.+|.|+||+|+++||...|..
T Consensus 180 fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 180 FARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 467788888888888888888887776543 67777888888888888888888888776544
No 86
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=97.13 E-value=0.035 Score=58.16 Aligned_cols=139 Identities=15% Similarity=0.223 Sum_probs=78.9
Q ss_pred hhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLT 660 (861)
Q Consensus 581 E~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~ 660 (861)
++.++.+..+..+..+.+...+-..|+.-++.++....++...|.. ....+..+..++.++....+++..++-.-.
T Consensus 35 ei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~----y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~e 110 (201)
T PF13851_consen 35 EIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN----YEKDKQSLQNLKARLKELEKELKDLKWEHE 110 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433333334444444444344444444444444444444432 123344455555555555566665555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----hc-cCcchhhHHHHHHHHHHHHHHHHHHHHHHhHhcCcccc
Q 002980 661 IEDAKFRELQERKMELHQAIVNM----ER-GGSADGLLQVRADRIQSDLEELLKALTERCKKHGIDVK 723 (861)
Q Consensus 661 ~lEa~L~d~Q~EL~eLqqeIqkL----e~-~~~~n~~Lkera~~in~el~eL~~~L~e~~~~~g~~~~ 723 (861)
+++..+..++.|..+|+...... .+ ..-+|-.|+.++..+...++.-..+|++.....+++.-
T Consensus 111 vL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~nldp~ 178 (201)
T PF13851_consen 111 VLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAANLDPA 178 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 55555555555555555444411 11 12278899999999999999999999998888887754
No 87
>PRK03918 chromosome segregation protein; Provisional
Probab=97.09 E-value=0.018 Score=71.55 Aligned_cols=19 Identities=21% Similarity=0.046 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002980 599 SREKIEFYRSKMQELVLYK 617 (861)
Q Consensus 599 sree~e~LrsQlQEL~~~K 617 (861)
++.+++.++.+++.+....
T Consensus 205 l~~ei~~l~~e~~~l~~~~ 223 (880)
T PRK03918 205 VLREINEISSELPELREEL 223 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 88
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=97.07 E-value=0.0017 Score=67.23 Aligned_cols=64 Identities=25% Similarity=0.407 Sum_probs=52.0
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHhc---CCC--HH----HHHHHHHhhCCCCCCccCHHHHHHHHHHH
Q 002980 407 QKYSKVFMEVDTDRDGRITGEQARNLFMSW---RLP--RE----VLKQVWDLSDQDSDSMLSLREFCFALYLM 470 (861)
Q Consensus 407 ~~Y~~iF~~lD~d~dG~Isg~ea~~~f~ks---gLp--~e----~L~~IW~LaD~d~dG~LdkdEF~vAMhLI 470 (861)
.+.+=+|+-+|.+++|+|+.+++..++... +.. .+ .++++..-+|.|+||+|+++|||-++.-.
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 355557999999999999999999988864 455 44 45566677999999999999999988643
No 89
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.07 E-value=0.021 Score=69.46 Aligned_cols=84 Identities=21% Similarity=0.401 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 002980 598 DSREKIEFYRSKMQELVLYKSRCDNRL---NEITERALADRREAETLGKKYEE-------KYKQVAEIASKLTIEDAKFR 667 (861)
Q Consensus 598 ~sree~e~LrsQlQEL~~~Ksr~e~~L---~ei~e~~s~~kreIesLr~k~ee-------~~kqv~elEsQL~~lEa~L~ 667 (861)
+.+++-+.||.++.+|...+.++++.. .++..+....+..++.++.+|.+ ...+.+.+..|+.+.+....
T Consensus 383 e~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~ 462 (980)
T KOG0980|consen 383 ENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSID 462 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 455566788888888888888877666 44444433344444444443333 33444555555555544444
Q ss_pred HHHHHHHHHHHHHH
Q 002980 668 ELQERKMELHQAIV 681 (861)
Q Consensus 668 d~Q~EL~eLqqeIq 681 (861)
+..+++.+|...|+
T Consensus 463 ~~~~~~~~L~d~le 476 (980)
T KOG0980|consen 463 DVEEENTNLNDQLE 476 (980)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 90
>PRK03918 chromosome segregation protein; Provisional
Probab=97.06 E-value=0.02 Score=71.12 Aligned_cols=60 Identities=15% Similarity=0.283 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHH
Q 002980 650 KQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLK 709 (861)
Q Consensus 650 kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~ 709 (861)
+.++.++.++..++..+..++.++.+|+.+|.++++...+...+.+++..++..+..++.
T Consensus 666 ~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~l~~ 725 (880)
T PRK03918 666 EEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEE 725 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444333444444444444444444333
No 91
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.06 E-value=0.00052 Score=50.28 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCCCCCcCHHHHHHHHH
Q 002980 43 LAQIWMHADHNHTSYLGRQEFYNALK 68 (861)
Q Consensus 43 L~qIW~laD~d~DG~Ls~~EF~~Al~ 68 (861)
+.++|+..|.|+||+|+++||..+|+
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 56778888888888888888887765
No 92
>PRK02224 chromosome segregation protein; Provisional
Probab=97.04 E-value=0.016 Score=72.24 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=4.9
Q ss_pred CHHHH-HHHHHHH
Q 002980 402 KPSDI-QKYSKVF 413 (861)
Q Consensus 402 Spedk-~~Y~~iF 413 (861)
+|.++ ..++.||
T Consensus 147 ~p~~R~~ii~~l~ 159 (880)
T PRK02224 147 TPSDRQDMIDDLL 159 (880)
T ss_pred CHHHHHHHHHHHh
Confidence 44443 3344444
No 93
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.03 E-value=0.017 Score=76.36 Aligned_cols=109 Identities=20% Similarity=0.204 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002980 605 FYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (861)
Q Consensus 605 ~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe 684 (861)
.++.+.++|+..-.....++.+..++...++++...+.++|++..++++++|..+..++.+++.+..++..|+.+|+.++
T Consensus 898 ~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~ 977 (1930)
T KOG0161|consen 898 RLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLD 977 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444455555555666666666666666666666666666666666666666554
Q ss_pred ccCc----chhhHHHHHHHHHHHHHHHHHHHHH
Q 002980 685 RGGS----ADGLLQVRADRIQSDLEELLKALTE 713 (861)
Q Consensus 685 ~~~~----~n~~Lkera~~in~el~eL~~~L~e 713 (861)
+.+. +-..|+++++..+.++...++.++.
T Consensus 978 e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~ 1010 (1930)
T KOG0161|consen 978 ENISKLSKEKKELEERIRELQDDLQAEEEKAKS 1010 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 4445777777777777776665543
No 94
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=97.02 E-value=0.079 Score=51.84 Aligned_cols=88 Identities=11% Similarity=0.215 Sum_probs=41.1
Q ss_pred hhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLT 660 (861)
Q Consensus 581 E~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~ 660 (861)
++..++.++..+...+.+...++..++..++.....-.+++++...=-...+..-..|..||.++.+...++..+...+.
T Consensus 4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~ 83 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAE 83 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555554444444444444444444444444443221123333445555666555555455555554444
Q ss_pred HHHHHHHH
Q 002980 661 IEDAKFRE 668 (861)
Q Consensus 661 ~lEa~L~d 668 (861)
.+...|..
T Consensus 84 ~a~~~l~~ 91 (132)
T PF07926_consen 84 SAKAELEE 91 (132)
T ss_pred HHHHHHHH
Confidence 44444433
No 95
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.99 E-value=0.019 Score=57.14 Aligned_cols=49 Identities=12% Similarity=0.264 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHH
Q 002980 599 SREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEE 647 (861)
Q Consensus 599 sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee 647 (861)
..++++.+..++.+|.....+.++++..++.++..++.+|+.+..++.+
T Consensus 12 a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~ 60 (143)
T PF12718_consen 12 AQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKE 60 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555554444444444444444433333
No 96
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.99 E-value=0.023 Score=66.94 Aligned_cols=64 Identities=13% Similarity=0.213 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002980 623 RLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERG 686 (861)
Q Consensus 623 ~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~ 686 (861)
++.++++++.+.+..++++..+......++.++++.....+..|.++..++.+|..++.++++.
T Consensus 338 ~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke 401 (562)
T PHA02562 338 KLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE 401 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444444444444444445555555555555555544433
No 97
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=96.98 E-value=0.0023 Score=64.41 Aligned_cols=64 Identities=23% Similarity=0.346 Sum_probs=56.4
Q ss_pred cHHHHHHHHHhhCCCCCCccCHHHHHHHHHh--CCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHH
Q 002980 5 NQDQFESFFRRADLDGDGRISGAEAVAFFQG--SNLPKQVLAQIWMHADHNHTSYLGRQEFYNALK 68 (861)
Q Consensus 5 e~~~y~~iF~~~D~DgDG~ISg~E~~~~f~~--SgLp~~~L~qIW~laD~d~DG~Ls~~EF~~Al~ 68 (861)
........|+.+|.|++|+||..+++.+.+. -+|.++.|.++++-+|.|+||-|+-+||..-|+
T Consensus 104 t~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 104 TKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMK 169 (172)
T ss_pred cHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHh
Confidence 3456788899999999999999999998775 468999999999999999999999999988765
No 98
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.97 E-value=0.037 Score=67.89 Aligned_cols=71 Identities=13% Similarity=0.159 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--------chhhHHHHHHHHHHHHHHHHHHHHHHhHhcCc
Q 002980 650 KQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGS--------ADGLLQVRADRIQSDLEELLKALTERCKKHGI 720 (861)
Q Consensus 650 kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~--------~n~~Lkera~~in~el~eL~~~L~e~~~~~g~ 720 (861)
++++.++.+|..+.+.+++++.+++..+..+++=+..++ +.+.+++-+.+...+|++|.++++..-+++|+
T Consensus 639 ~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~~~~ 717 (717)
T PF10168_consen 639 KELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKKIVNF 717 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 334444455555555555555555544443331111111 33467777777888888888888887777664
No 99
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.96 E-value=0.027 Score=73.72 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002980 641 LGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMER 685 (861)
Q Consensus 641 Lr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~ 685 (861)
+..++++..+++++++.++..++..+..++.++.++++++..|+.
T Consensus 381 leeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~ 425 (1486)
T PRK04863 381 NEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALER 425 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444455555555555555555554433
No 100
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=96.96 E-value=0.055 Score=58.34 Aligned_cols=133 Identities=16% Similarity=0.149 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 589 VDEREKVILDSREKIEFYRSKMQELVLYKSR-CDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFR 667 (861)
Q Consensus 589 la~Le~qi~~sree~e~LrsQlQEL~~~Ksr-~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~ 667 (861)
|.++...+.+.+++.+.++.+.+++...... ......+++.++...+..+..|+.+++...+.++....+|..+...|.
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~ 101 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLE 101 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777777776661110 011112222233334444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHH----HHhccCcchhhHHHHHHHHHHHHHHHHHHH-HHHhHhcCcc
Q 002980 668 ELQERKMELHQAIV----NMERGGSADGLLQVRADRIQSDLEELLKAL-TERCKKHGID 721 (861)
Q Consensus 668 d~Q~EL~eLqqeIq----kLe~~~~~n~~Lkera~~in~el~eL~~~L-~e~~~~~g~~ 721 (861)
..+..+.......+ .+++.+.....+++++..+...+..-+..| .+.+..|.++
T Consensus 102 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ifpI~ 160 (302)
T PF10186_consen 102 QRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQELSEIFPIE 160 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCce
Confidence 44444431111111 122223344555666666666666555544 4577788885
No 101
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.96 E-value=0.036 Score=59.21 Aligned_cols=61 Identities=15% Similarity=0.162 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHH
Q 002980 586 GKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYE 646 (861)
Q Consensus 586 ekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~e 646 (861)
++.+..|++.....-++++.|..++.+....-...+.++.++.-++..+..+++....+++
T Consensus 77 er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e 137 (237)
T PF00261_consen 77 ERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAE 137 (237)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444433344444444444444444444444444444343333444443333333
No 102
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.96 E-value=0.025 Score=66.08 Aligned_cols=57 Identities=23% Similarity=0.208 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------CcchhhHHHHHHHHHHHHHHHHHHHHH
Q 002980 657 SKLTIEDAKFRELQERKMELHQAIVNMERG-------GSADGLLQVRADRIQSDLEELLKALTE 713 (861)
Q Consensus 657 sQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~-------~~~n~~Lkera~~in~el~eL~~~L~e 713 (861)
.++..+++++..++.++..|+.+++++++. +.+...|+.+++..+...+.|.+.+.+
T Consensus 317 ~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~ee 380 (498)
T TIGR03007 317 IELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRES 380 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555554444443 334555555555555555555555554
No 103
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=96.93 E-value=0.0054 Score=68.20 Aligned_cols=120 Identities=18% Similarity=0.241 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 589 VDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRE 668 (861)
Q Consensus 589 la~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d 668 (861)
+..++.++...+.+.+.|..=+++|.. .......+.++.+++..++.+.+.+.+++++..++.++++.++..+|.++.+
T Consensus 11 ~~~l~~~~~~~~~E~~~Y~~fL~~l~~-~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~ 89 (314)
T PF04111_consen 11 LEQLDKQLEQAEKERDTYQEFLKKLEE-ESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEE 89 (314)
T ss_dssp --------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555665677666666661 1112233343444444455555555555555555555555555555555544
Q ss_pred HHHHHHHHHHHHHHH----hccCcchhhHHHHHHHHHHHHHHHHH
Q 002980 669 LQERKMELHQAIVNM----ERGGSADGLLQVRADRIQSDLEELLK 709 (861)
Q Consensus 669 ~Q~EL~eLqqeIqkL----e~~~~~n~~Lkera~~in~el~eL~~ 709 (861)
++.+..++-.+...+ -+-+++...|+.+++..+..|+.|++
T Consensus 90 l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 90 LDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444443322 12333555666666666666666654
No 104
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.92 E-value=0.034 Score=72.87 Aligned_cols=72 Identities=18% Similarity=0.235 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 608 SKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQA 679 (861)
Q Consensus 608 sQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqe 679 (861)
.++++|.....+...++.++.+++...+.+++.+..++++..+++.+++..+..++..+...+..+..|+.+
T Consensus 355 ~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~ 426 (1486)
T PRK04863 355 ADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERA 426 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444445555555555555555555555555555555544444444444433
No 105
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.91 E-value=0.061 Score=61.76 Aligned_cols=69 Identities=10% Similarity=0.179 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccCcchhhHHHHHHHHHHHHHHHH
Q 002980 640 TLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV-NMERGGSADGLLQVRADRIQSDLEELL 708 (861)
Q Consensus 640 sLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIq-kLe~~~~~n~~Lkera~~in~el~eL~ 708 (861)
.++++|+.+.+++..+..+....+..|..++.|..++.++++ .|+.++++.+.|+.....+..+|..+.
T Consensus 175 ~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 175 AVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344455555555555555555556666666666666666666 555666677777777777777776666
No 106
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.91 E-value=0.042 Score=53.74 Aligned_cols=48 Identities=25% Similarity=0.261 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 634 DRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (861)
Q Consensus 634 ~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIq 681 (861)
..........+|+.+...-...-..|..+...+..++.++.+|+.+..
T Consensus 36 q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~ 83 (132)
T PF07926_consen 36 QAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAE 83 (132)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555556655544444444555555555555555555555544
No 107
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.90 E-value=0.079 Score=55.36 Aligned_cols=94 Identities=7% Similarity=0.164 Sum_probs=40.7
Q ss_pred hhhHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 581 DSTTAGKKVDEREKVILDSREKIEFYRS---KMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIAS 657 (861)
Q Consensus 581 E~~elekela~Le~qi~~sree~e~Lrs---QlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEs 657 (861)
.+.++..+|.++..++++++.|-..|+. ..+.-+.+-...+++|..+ +..-..+|..|+.++ .....
T Consensus 13 ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpql---l~~h~eEvr~Lr~~L-------R~~q~ 82 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQL---LQRHNEEVRVLRERL-------RKSQE 82 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH---HHHHHHHHHHHHHHH-------HHHHH
Confidence 4455555555555555554444222221 1111111112223333322 222345566666444 44444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002980 658 KLTIEDAKFRELQERKMELHQAIVNME 684 (861)
Q Consensus 658 QL~~lEa~L~d~Q~EL~eLqqeIqkLe 684 (861)
+...++..++++..++..++.++..|+
T Consensus 83 ~~r~~~~klk~~~~el~k~~~~l~~L~ 109 (194)
T PF15619_consen 83 QERELERKLKDKDEELLKTKDELKHLK 109 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555555555443
No 108
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.90 E-value=0.059 Score=56.26 Aligned_cols=118 Identities=18% Similarity=0.290 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 599 SREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEE-KYKQVAEIASKLTIEDAKFRELQERKMELH 677 (861)
Q Consensus 599 sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee-~~kqv~elEsQL~~lEa~L~d~Q~EL~eLq 677 (861)
-.+++..|+.+|-.....-.....++++..+++...+..+..|.+-.++ .....+++..+|..++..+.+...++..|+
T Consensus 66 h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Le 145 (194)
T PF15619_consen 66 HNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELE 145 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444667777777777777777888887777777777777777655443 224467788888888888888888888888
Q ss_pred HHHH--------HHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 002980 678 QAIV--------NMERGGSADGLLQVRADRIQSDLEELLKALTERCK 716 (861)
Q Consensus 678 qeIq--------kLe~~~~~n~~Lkera~~in~el~eL~~~L~e~~~ 716 (861)
..++ .|.........++..+..++.++..|...|.|+-+
T Consensus 146 k~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer 192 (194)
T PF15619_consen 146 KQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKER 192 (194)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8777 44444556667778888888888888888877644
No 109
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=96.89 E-value=0.03 Score=57.29 Aligned_cols=22 Identities=9% Similarity=0.172 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhH
Q 002980 604 EFYRSKMQELVLYKSRCDNRLN 625 (861)
Q Consensus 604 e~LrsQlQEL~~~Ksr~e~~L~ 625 (861)
..+.+++++++.+......++.
T Consensus 91 ~~l~~el~~l~~~~~~~~~~l~ 112 (191)
T PF04156_consen 91 QQLQEELDQLQERIQELESELE 112 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333333
No 110
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=96.89 E-value=0.0025 Score=66.94 Aligned_cols=65 Identities=18% Similarity=0.230 Sum_probs=58.4
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHHhC--CCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHH
Q 002980 6 QDQFESFFRRADLDGDGRISGAEAVAFFQGS--NLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLV 70 (861)
Q Consensus 6 ~~~y~~iF~~~D~DgDG~ISg~E~~~~f~~S--gLp~~~L~qIW~laD~d~DG~Ls~~EF~~Al~Li 70 (861)
...++.+|+.+|.|+.|.|+-.|++..|... .|+++.+..|+...|..+.|.|.+++|+.+|-.+
T Consensus 123 i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L 189 (221)
T KOG0037|consen 123 INQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL 189 (221)
T ss_pred HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH
Confidence 4568899999999999999999999999864 5999999999999998888999999999876443
No 111
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.87 E-value=0.058 Score=59.22 Aligned_cols=71 Identities=23% Similarity=0.350 Sum_probs=53.7
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 596 ILDSREKIE-FYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKF 666 (861)
Q Consensus 596 i~~sree~e-~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L 666 (861)
+.+.+.+++ +|+.+++++.....+....+..+++++...+..+.+|+.+++....+...++.+|..++..+
T Consensus 182 ~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~ 253 (312)
T PF00038_consen 182 AQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRL 253 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHH
Confidence 335666766 99999999999888888888888888877888888888777776666677776666554433
No 112
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.87 E-value=0.021 Score=73.58 Aligned_cols=77 Identities=22% Similarity=0.307 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 604 EFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAI 680 (861)
Q Consensus 604 e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeI 680 (861)
+.++..+.++.....+..+++..++.++..++..++.++.+++...+++..++.++..++..+.+++.++..|++.+
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (1163)
T COG1196 379 EALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQL 455 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444333333333333333333333
No 113
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.87 E-value=0.049 Score=61.43 Aligned_cols=62 Identities=21% Similarity=0.198 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 002980 650 KQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTE 713 (861)
Q Consensus 650 kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L~e 713 (861)
.++..++.++..+++.+..++.++.+++.++..++.. ....+++++..++.++.+++..|.+
T Consensus 203 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~--~~~~~~~~l~~~~~~l~~~~~~l~~ 264 (423)
T TIGR01843 203 RERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQT--FREEVLEELTEAQARLAELRERLNK 264 (423)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444422211 2334455566666666666665544
No 114
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=96.87 E-value=0.0039 Score=65.49 Aligned_cols=68 Identities=21% Similarity=0.352 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhhCCCCCCccCHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHH
Q 002980 405 DIQKYSKVFMEVDTDRDGRITGEQARNLFMSW--RLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMER 472 (861)
Q Consensus 405 dk~~Y~~iF~~lD~d~dG~Isg~ea~~~f~ks--gLp~e~L~~IW~LaD~d~dG~LdkdEF~vAMhLI~~ 472 (861)
-++.++++|..+|+|+.|.|+-.||+..|... .|+.+.+.-|.+-.|....|.|++|+|+.++-.+.+
T Consensus 122 ~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~ 191 (221)
T KOG0037|consen 122 YINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQR 191 (221)
T ss_pred HHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHH
Confidence 36788999999999999999999999999987 699999999999999888999999999776655444
No 115
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.86 E-value=0.051 Score=61.31 Aligned_cols=76 Identities=18% Similarity=0.199 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHH
Q 002980 635 RREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALT 712 (861)
Q Consensus 635 kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L~ 712 (861)
+.++...+.+|.+...++.+++.++..++..+..++.++..+..... .+...+...++.++..++..++.++..|.
T Consensus 195 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~--~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 195 RLELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFR--EEVLEELTEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566666666677777777777777777777776666655443 12223455667777777777777666654
No 116
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.74 E-value=0.1 Score=56.80 Aligned_cols=46 Identities=11% Similarity=0.221 Sum_probs=16.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 002980 585 AGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITER 630 (861)
Q Consensus 585 lekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~ 630 (861)
++++|..|.++|.+...+++.++.++.++...-.+.+.++.+++++
T Consensus 50 ~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~ 95 (265)
T COG3883 50 IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKEN 95 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333
No 117
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.73 E-value=0.052 Score=70.29 Aligned_cols=137 Identities=16% Similarity=0.261 Sum_probs=63.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 002980 586 GKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKY-KQVAEIASKLTIEDA 664 (861)
Q Consensus 586 ekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~-kqv~elEsQL~~lEa 664 (861)
+..|..+..+..++.+++..+.++++++......+..++.....++..++.+...++.++++.. .....++.+|..++.
T Consensus 613 ~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 692 (1201)
T PF12128_consen 613 EDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEE 692 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344445555555544444444554444444444455555555555433 223445555555555
Q ss_pred HHHHHHHHHHHHHHHHH----HH-----hccCcchhhHHHHHHHHH-----------HHHHHHHHHHHHHhHhcCccc
Q 002980 665 KFRELQERKMELHQAIV----NM-----ERGGSADGLLQVRADRIQ-----------SDLEELLKALTERCKKHGIDV 722 (861)
Q Consensus 665 ~L~d~Q~EL~eLqqeIq----kL-----e~~~~~n~~Lkera~~in-----------~el~eL~~~L~e~~~~~g~~~ 722 (861)
.+..++.++.++.+++. .+ ..-+...+.+.+++..|. .++.+|+++++...+.-||+.
T Consensus 693 ~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~ 770 (1201)
T PF12128_consen 693 ELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDP 770 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 55555555555555443 00 001113333333333333 344455555566666677775
No 118
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.72 E-value=0.076 Score=63.86 Aligned_cols=66 Identities=15% Similarity=0.250 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchh-------------hHHHHHHHHHHHHHHHHHHHHHH
Q 002980 649 YKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADG-------------LLQVRADRIQSDLEELLKALTER 714 (861)
Q Consensus 649 ~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~~n~-------------~Lkera~~in~el~eL~~~L~e~ 714 (861)
...|+++..++..++.+++.+.+.+.+|..++++|-++..+.. .-|+.|..|=.|+.+|++.+|..
T Consensus 446 ~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l 524 (594)
T PF05667_consen 446 LQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSL 524 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777788888888888888899988887777665543 33566667777777777777653
No 119
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=96.72 E-value=0.0041 Score=71.94 Aligned_cols=74 Identities=20% Similarity=0.377 Sum_probs=66.9
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCC-----HHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHH
Q 002980 399 PKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLP-----REVLKQVWDLSDQDSDSMLSLREFCFALYLMERY 473 (861)
Q Consensus 399 p~ISpedk~~Y~~iF~~lD~d~dG~Isg~ea~~~f~ksgLp-----~e~L~~IW~LaD~d~dG~LdkdEF~vAMhLI~~~ 473 (861)
+.+|.+|.....+.|.++| |++|+|+..++.++|.+.+++ +++++.+..-++.|.+|+++++||+.+++=+..+
T Consensus 11 ~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s~ 89 (627)
T KOG0046|consen 11 SQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKSK 89 (627)
T ss_pred ccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhhh
Confidence 3689999999999999999 999999999999999988655 7999999999999999999999999877665554
No 120
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.72 E-value=0.03 Score=65.37 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=15.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 629 ERALADRREAETLGKKYEEKYKQVAEIASKLTIE 662 (861)
Q Consensus 629 e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~l 662 (861)
.++.+++.++..++..|.+..-++..+..+|..+
T Consensus 254 ~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l 287 (498)
T TIGR03007 254 GRIEALEKQLDALRLRYTDKHPDVIATKREIAQL 287 (498)
T ss_pred HHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHH
Confidence 4444445555555555554444444444444333
No 121
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.69 E-value=0.01 Score=61.53 Aligned_cols=96 Identities=14% Similarity=0.210 Sum_probs=29.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhh
Q 002980 613 LVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGL 692 (861)
Q Consensus 613 L~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~~n~~ 692 (861)
+...+++..++|.+++.++.+++.++......+......+..++.+|..++..|+.++.-++.|+.|+..| +-+...
T Consensus 86 l~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L---~l~~~~ 162 (194)
T PF08614_consen 86 LYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQAL---QLQLNM 162 (194)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred cccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 33333333334443333333333333333333333334444444444444444444444444444444422 334445
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002980 693 LQVRADRIQSDLEELLKAL 711 (861)
Q Consensus 693 Lkera~~in~el~eL~~~L 711 (861)
|.++++.++.|=.+|.+-+
T Consensus 163 ~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 163 LEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555554443
No 122
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=96.65 E-value=0.059 Score=53.53 Aligned_cols=80 Identities=13% Similarity=0.197 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-chhhHHHHHHHHHHHHHHHHHHHH
Q 002980 634 DRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGS-ADGLLQVRADRIQSDLEELLKALT 712 (861)
Q Consensus 634 ~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~-~n~~Lkera~~in~el~eL~~~L~ 712 (861)
++..++.|+.++++....+..++.+...++..++.++..+..+++++++|....+ .-......++.-..+++.|++.|.
T Consensus 71 l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 71 LQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444444555555555555555555555555555555555544333 445677888888889999998886
Q ss_pred H
Q 002980 713 E 713 (861)
Q Consensus 713 e 713 (861)
+
T Consensus 151 q 151 (151)
T PF11559_consen 151 Q 151 (151)
T ss_pred C
Confidence 3
No 123
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.61 E-value=0.068 Score=70.99 Aligned_cols=72 Identities=17% Similarity=0.176 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 591 EREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIE 662 (861)
Q Consensus 591 ~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~l 662 (861)
+++.++.+.+.+++....+..+|+.++.+.+.++.++++.+..++..+..+..++.....+|++++..+..+
T Consensus 905 ~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~ 976 (1930)
T KOG0161|consen 905 ELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSL 976 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344344444444444455555555554444444444444444444444444444444444444444333
No 124
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=96.61 E-value=0.0021 Score=47.14 Aligned_cols=27 Identities=33% Similarity=0.511 Sum_probs=24.8
Q ss_pred HHHHHHhhCCCCCCccCHHHHHHHHHh
Q 002980 9 FESFFRRADLDGDGRISGAEAVAFFQG 35 (861)
Q Consensus 9 y~~iF~~~D~DgDG~ISg~E~~~~f~~ 35 (861)
++.+|+.+|+|+||+|+.+|++.++++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 578999999999999999999999864
No 125
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.58 E-value=0.058 Score=70.48 Aligned_cols=20 Identities=25% Similarity=0.627 Sum_probs=10.2
Q ss_pred CCCCCCCCCHHH-HHHHHHHH
Q 002980 394 SQVPWPKMKPSD-IQKYSKVF 413 (861)
Q Consensus 394 ~~~~Wp~ISped-k~~Y~~iF 413 (861)
.++.||...|.+ +..|+.||
T Consensus 159 ge~~~~~~~~~~rk~~~d~if 179 (1311)
T TIGR00606 159 EDSNWPLSEGKALKQKFDEIF 179 (1311)
T ss_pred cccccccCChHHHHHHHHHHh
Confidence 345575334433 45566666
No 126
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=96.57 E-value=0.0024 Score=46.88 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=19.3
Q ss_pred HHHHHHhhCCCCCCccCHHHHHHHHH
Q 002980 9 FESFFRRADLDGDGRISGAEAVAFFQ 34 (861)
Q Consensus 9 y~~iF~~~D~DgDG~ISg~E~~~~f~ 34 (861)
|+.+|+.+|.|+||+|+.+|++.+|+
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 56777777877788888777777776
No 127
>PLN02964 phosphatidylserine decarboxylase
Probab=96.57 E-value=0.0069 Score=72.99 Aligned_cols=70 Identities=16% Similarity=0.292 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcC--CCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHH
Q 002980 401 MKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWR--LPREVLKQVWDLSDQDSDSMLSLREFCFALYLM 470 (861)
Q Consensus 401 ISpedk~~Y~~iF~~lD~d~dG~Isg~ea~~~f~ksg--Lp~e~L~~IW~LaD~d~dG~LdkdEF~vAMhLI 470 (861)
.+.+++...+.+|..+|.|++|.|+.+|+..++...+ .+.++|..+.+++|.|++|.|+++||.-.|...
T Consensus 173 pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 173 PVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 3555666688999999999999999999998888654 788899999999999999999999998766553
No 128
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.56 E-value=0.097 Score=58.40 Aligned_cols=89 Identities=19% Similarity=0.204 Sum_probs=42.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHH
Q 002980 627 ITERALADRREAETLGKKYEEKY----KQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQS 702 (861)
Q Consensus 627 i~e~~s~~kreIesLr~k~ee~~----kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~ 702 (861)
+.++.+.++.++..|++-.++.. ..++.+.++|..+..++..++.++.++++++.+++ ...+.+.+++..++.
T Consensus 177 l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~---~~I~~~~~~k~e~~~ 253 (312)
T smart00787 177 LRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELE---SKIEDLTNKKSELNT 253 (312)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 33333444444444443333321 24444445555555555555555555555555332 233344445555555
Q ss_pred HHHHHHHHHHHHhHhcC
Q 002980 703 DLEELLKALTERCKKHG 719 (861)
Q Consensus 703 el~eL~~~L~e~~~~~g 719 (861)
+|.++++.+ +.|+.+.
T Consensus 254 ~I~~ae~~~-~~~r~~t 269 (312)
T smart00787 254 EIAEAEKKL-EQCRGFT 269 (312)
T ss_pred HHHHHHHHH-HhcCCCC
Confidence 555555433 3455444
No 129
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.56 E-value=0.22 Score=51.81 Aligned_cols=97 Identities=15% Similarity=0.138 Sum_probs=48.2
Q ss_pred hhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLT 660 (861)
Q Consensus 581 E~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~ 660 (861)
|-..+...|.-.+.--.++.+++..|+.+++-++ .+.+.-+-++++...++..+.+|..++.....+...+|..-.
T Consensus 23 en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Q----qal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q 98 (193)
T PF14662_consen 23 ENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQ----QALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQ 98 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444455666667777766664 222222333344444445555555455445555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002980 661 IEDAKFRELQERKMELHQAIV 681 (861)
Q Consensus 661 ~lEa~L~d~Q~EL~eLqqeIq 681 (861)
.+.+.+..+|++...|..+..
T Consensus 99 ~L~~~i~~Lqeen~kl~~e~~ 119 (193)
T PF14662_consen 99 SLVAEIETLQEENGKLLAERD 119 (193)
T ss_pred HHHHHHHHHHHHHhHHHHhhh
Confidence 555555555555555555444
No 130
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.55 E-value=0.039 Score=65.38 Aligned_cols=120 Identities=23% Similarity=0.276 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccCcchhhH
Q 002980 623 RLNEITERALADRREAETLGKKYEEKY--------KQVAEIASKLTIEDAKFRELQERKMELHQAIV-NMERGGSADGLL 693 (861)
Q Consensus 623 ~L~ei~e~~s~~kreIesLr~k~ee~~--------kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIq-kLe~~~~~n~~L 693 (861)
+|...+.++-.++++++.|+.+..... .+++.+...|.-.+..+..+-.+++.++.++. .+|.-..+...|
T Consensus 243 eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~l 322 (629)
T KOG0963|consen 243 ELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISAL 322 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566666666665554422 23344455555556666666666666666666 333444477778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCccccccceeecCCCCCCCcccccccch
Q 002980 694 QVRADRIQSDLEELLKALTERCKKHGIDVKSHAVIELPFGWQPGIQEGAGVWD 746 (861)
Q Consensus 694 kera~~in~el~eL~~~L~e~~~~~g~~~~~~~~~e~p~gw~~~~~e~a~~w~ 746 (861)
..+.......|++|+++|+.|.----+|-.-.+|.+|=||=- |.|-+||
T Consensus 323 e~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk~ief~~s----e~a~~~~ 371 (629)
T KOG0963|consen 323 EKELKAKISELEELKEKLNSRSDYEEIKKELSILKAIEFGDS----EEANDED 371 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhhcCCc----ccccccc
Confidence 888888888899999999888665567888889999888743 6777777
No 131
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.55 E-value=0.12 Score=51.42 Aligned_cols=14 Identities=14% Similarity=0.133 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 002980 657 SKLTIEDAKFRELQ 670 (861)
Q Consensus 657 sQL~~lEa~L~d~Q 670 (861)
.+|..+|....+..
T Consensus 94 ~kv~eLE~~~~~~~ 107 (140)
T PF10473_consen 94 EKVSELESLNSSLE 107 (140)
T ss_pred HHHHHHHHHhHHHH
Confidence 33333333333333
No 132
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.54 E-value=0.046 Score=68.47 Aligned_cols=113 Identities=22% Similarity=0.279 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 599 SREKIEFYRSKMQELVLYKSRCDNRLNEITERA----LADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKM 674 (861)
Q Consensus 599 sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~----s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~ 674 (861)
.+.+++.++++..+|...+.+|+.+|.++.... .....++..++++.....+++.+..+++.++|.+|..+....+
T Consensus 438 ~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~ 517 (1293)
T KOG0996|consen 438 ARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHE 517 (1293)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345555555555555555555555433221 1123333334444444445555666666666666665554444
Q ss_pred H-------HHHHHHH----HhccCcchhhHHHHHHHHHHHHHHHHHHH
Q 002980 675 E-------LHQAIVN----MERGGSADGLLQVRADRIQSDLEELLKAL 711 (861)
Q Consensus 675 e-------LqqeIqk----Le~~~~~n~~Lkera~~in~el~eL~~~L 711 (861)
. |+..|.. +++++.+...|++.+.+...++.+..+.|
T Consensus 518 ~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l 565 (1293)
T KOG0996|consen 518 TGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKEL 565 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhH
Confidence 3 3344432 34444455566666666555555555544
No 133
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.53 E-value=0.058 Score=65.11 Aligned_cols=142 Identities=18% Similarity=0.159 Sum_probs=80.5
Q ss_pred HhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHH
Q 002980 585 AGKKVDEREKVILD-SREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRR-------EAETLGKKYEEKYKQVAEIA 656 (861)
Q Consensus 585 lekela~Le~qi~~-sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kr-------eIesLr~k~ee~~kqv~elE 656 (861)
.++.+.+|+.++.+ .+..++......+.|+..-..|+.+|+++...+..... .-..|+.+|+.....+..+.
T Consensus 37 ~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr 116 (660)
T KOG4302|consen 37 RDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLR 116 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHH
Confidence 34555666666644 44455555555555555555556666555533321110 01135555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhHh
Q 002980 657 SKLTIEDAKFRELQERKMELHQAIV-------------------NMERGGSADGLLQVRADRIQSDLEELLKALTERCKK 717 (861)
Q Consensus 657 sQL~~lEa~L~d~Q~EL~eLqqeIq-------------------kLe~~~~~n~~Lkera~~in~el~eL~~~L~e~~~~ 717 (861)
.|...--++|.+++.++++|-.+|. +||+-..++..|+++.+.==.++.+++..+...|..
T Consensus 117 ~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~ 196 (660)
T KOG4302|consen 117 KQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSV 196 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555543 444445555556655555556677788888999999
Q ss_pred cCccccccc
Q 002980 718 HGIDVKSHA 726 (861)
Q Consensus 718 ~g~~~~~~~ 726 (861)
+|+++..++
T Consensus 197 Lg~~~~~~v 205 (660)
T KOG4302|consen 197 LGLDFSMTV 205 (660)
T ss_pred hCCCcccch
Confidence 999987554
No 134
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.53 E-value=0.086 Score=57.85 Aligned_cols=62 Identities=13% Similarity=0.258 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-chhhHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 002980 657 SKLTIEDAKFRELQERKMELHQAIVNMERGGS-ADGLLQVRADRIQSDLEELLKALTERCKKH 718 (861)
Q Consensus 657 sQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~-~n~~Lkera~~in~el~eL~~~L~e~~~~~ 718 (861)
.+|..++..|..++.+...|+..|..|+.... +...++..|..+..+|.+|+..+...++.|
T Consensus 223 ~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey 285 (312)
T PF00038_consen 223 RQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREY 285 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHH
Confidence 33344444444445555555555554444333 555666666666777777666665554433
No 135
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.51 E-value=0.0057 Score=69.89 Aligned_cols=56 Identities=27% Similarity=0.261 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHH
Q 002980 406 IQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMER 472 (861)
Q Consensus 406 k~~Y~~iF~~lD~d~dG~Isg~ea~~~f~ksgLp~e~L~~IW~LaD~d~dG~LdkdEF~vAMhLI~~ 472 (861)
+..++.+|..+|+|+||+|+.+|+.. +..+++..|.|+||+|+++||..+|.-+.+
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-----------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-----------SDAVFDALDLNHDGKITPEEMRAGLGAALR 388 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-----------HHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 56788899999999999999999831 588999999999999999999999887665
No 136
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=96.47 E-value=0.12 Score=55.24 Aligned_cols=112 Identities=17% Similarity=0.240 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHH
Q 002980 605 FYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKL----------------TIEDAKFRE 668 (861)
Q Consensus 605 ~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL----------------~~lEa~L~d 668 (861)
.|..++.+....-...+..|.+.+++......-.+.++..+.+....+.+|+.+| ..+++++.-
T Consensus 82 eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~ 161 (240)
T PF12795_consen 82 ELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAA 161 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHH
Confidence 3333333333333444444444444444444444445555555555555555554 444666666
Q ss_pred HHHHHHHHHHHHH---HHhccCc-chhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 002980 669 LQERKMELHQAIV---NMERGGS-ADGLLQVRADRIQSDLEELLKALTERCK 716 (861)
Q Consensus 669 ~Q~EL~eLqqeIq---kLe~~~~-~n~~Lkera~~in~el~eL~~~L~e~~~ 716 (861)
++.++..|+.++. .+.+..+ +-..++.++..++..+..|+..|++++.
T Consensus 162 l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~ 213 (240)
T PF12795_consen 162 LEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRR 213 (240)
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666 2222222 6667888899999999999999988665
No 137
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.46 E-value=0.09 Score=68.75 Aligned_cols=6 Identities=17% Similarity=0.119 Sum_probs=2.3
Q ss_pred hCCCCC
Q 002980 50 ADHNHT 55 (861)
Q Consensus 50 aD~d~D 55 (861)
+..||-
T Consensus 34 ~G~NGa 39 (1311)
T TIGR00606 34 VGPNGA 39 (1311)
T ss_pred ECCCCC
Confidence 333443
No 138
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=96.45 E-value=0.0092 Score=60.16 Aligned_cols=63 Identities=22% Similarity=0.342 Sum_probs=49.2
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHH
Q 002980 406 IQKYSKVFMEVDTDRDGRITGEQARNLFMSW--RLPREVLKQVWDLSDQDSDSMLSLREFCFALY 468 (861)
Q Consensus 406 k~~Y~~iF~~lD~d~dG~Isg~ea~~~f~ks--gLp~e~L~~IW~LaD~d~dG~LdkdEF~vAMh 468 (861)
+......|..+|-|++|.|+...++.+.... +|..++|..+..-+|.|+||-|+-+||+..|.
T Consensus 105 ~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 105 KEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMK 169 (172)
T ss_pred HHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHh
Confidence 4455666777788888888888888877765 58888888888888888888888888876653
No 139
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=96.43 E-value=0.071 Score=57.73 Aligned_cols=92 Identities=14% Similarity=0.184 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 587 KKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKF 666 (861)
Q Consensus 587 kela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L 666 (861)
.+|++|+.|+.+++.+-..-+-||+-|+.--.+..+...+-+.+.+.++|+...|...|+...+.-+.|.-.|.+.|..+
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv 97 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQV 97 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHH
Confidence 56788888888877775555555555544333333344444455668899999999777776665555544444444433
Q ss_pred HHHHHHHHHHHH
Q 002980 667 RELQERKMELHQ 678 (861)
Q Consensus 667 ~d~Q~EL~eLqq 678 (861)
+-+..+|...+.
T Consensus 98 ~~lEgQl~s~Kk 109 (307)
T PF10481_consen 98 NFLEGQLNSCKK 109 (307)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 140
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.42 E-value=0.2 Score=56.68 Aligned_cols=63 Identities=14% Similarity=0.165 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002980 592 REKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAE 654 (861)
Q Consensus 592 Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~e 654 (861)
...|+++.+.+.+..++++.++...+.+++++|..++++...+...+..|..+|.+...+.+.
T Consensus 107 ~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qs 169 (499)
T COG4372 107 ARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQS 169 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666666777777777777777777777777777777777777666666554444433
No 141
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.41 E-value=0.0015 Score=62.40 Aligned_cols=61 Identities=16% Similarity=0.195 Sum_probs=45.7
Q ss_pred cHHHHHHHHHhhCCCCCCccCHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCcCHHHHHH
Q 002980 5 NQDQFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYN 65 (861)
Q Consensus 5 e~~~y~~iF~~~D~DgDG~ISg~E~~~~f~~SgLp~~~L~qIW~laD~d~DG~Ls~~EF~~ 65 (861)
......-.|..+|.|+||+|+..|++.+...-.-++.=+...+..+|.|+||.|++.|+..
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3455667799999999999999999988664455555689999999999999999999975
No 142
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.41 E-value=0.12 Score=64.01 Aligned_cols=117 Identities=19% Similarity=0.175 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 602 KIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (861)
Q Consensus 602 e~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIq 681 (861)
+.+.|.-..++|..-....+..|..+..++..++.++..|+.++...+.+++..+.+|..+.+.+.+.-.++..+-.+.+
T Consensus 816 e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e 895 (1174)
T KOG0933|consen 816 EYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQE 895 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHH
Confidence 34444444555555555555555556666666677777777777777777777777777777777777766666665555
Q ss_pred HHhccCc----chhhHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 002980 682 NMERGGS----ADGLLQVRADRIQSDLEELLKALTERCKKH 718 (861)
Q Consensus 682 kLe~~~~----~n~~Lkera~~in~el~eL~~~L~e~~~~~ 718 (861)
++...+. +...|..+...+.++-..+.+.+....++|
T Consensus 896 ~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~ 936 (1174)
T KOG0933|consen 896 KCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKH 936 (1174)
T ss_pred HHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhc
Confidence 4433222 555677777777777777777776666654
No 143
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.41 E-value=0.061 Score=59.97 Aligned_cols=133 Identities=11% Similarity=0.102 Sum_probs=87.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 585 AGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDA 664 (861)
Q Consensus 585 lekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa 664 (861)
|..++.+|...+.+++.+...||.++.....-......+.. . .+...+=..++.++.+|++...++..+-+....+..
T Consensus 84 L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~-~-~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ 161 (319)
T PF09789_consen 84 LKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHF-P-HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVT 161 (319)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccccccc-c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555556666666655443332222211 1 223345667788888888888888887777777777
Q ss_pred HHHHHHHHHHHHHHHHH-----------HHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhHhcC
Q 002980 665 KFRELQERKMELHQAIV-----------NMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHG 719 (861)
Q Consensus 665 ~L~d~Q~EL~eLqqeIq-----------kLe~~~~~n~~Lkera~~in~el~eL~~~L~e~~~~~g 719 (861)
+-..-+.+...|..||. .++..+.+|..|++|+.+++.|.+-++..++-.-..+.
T Consensus 162 ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 162 ERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777888888887 24445569999999999999999999988866544443
No 144
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.39 E-value=0.1 Score=63.80 Aligned_cols=109 Identities=16% Similarity=0.221 Sum_probs=59.0
Q ss_pred HHhhhhHHHHHHHHHhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH
Q 002980 619 RCDNRLNEITERALADRREAETLGKKYEE-----------KYKQVAEIASKLTIEDAKFRE-----------LQERKMEL 676 (861)
Q Consensus 619 r~e~~L~ei~e~~s~~kreIesLr~k~ee-----------~~kqv~elEsQL~~lEa~L~d-----------~Q~EL~eL 676 (861)
.+++++.-+++++.+++.+++.|+.+.++ +.||++..+.+|...=-.|+| ++.|++.+
T Consensus 329 sLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k 408 (1243)
T KOG0971|consen 329 SLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKK 408 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 34555566666777777777777777766 346666666555433222222 22233333
Q ss_pred HHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhHhcCccccccceeecCCC
Q 002980 677 HQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGIDVKSHAVIELPFG 733 (861)
Q Consensus 677 qqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L~e~~~~~g~~~~~~~~~e~p~g 733 (861)
+.|+. +.+..-+.|+.+++++.+.|++|++|+-. .+|-+.|++.|-+.=|.
T Consensus 409 ~sE~~---eL~r~kE~Lsr~~d~aEs~iadlkEQVDA---AlGAE~MV~qLtdknln 459 (1243)
T KOG0971|consen 409 NSELE---ELRRQKERLSRELDQAESTIADLKEQVDA---ALGAEEMVEQLTDKNLN 459 (1243)
T ss_pred hhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhcHHHHHHHHHhhccC
Confidence 33333 22333345666666666666666666543 35666666666655554
No 145
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.38 E-value=0.11 Score=62.81 Aligned_cols=42 Identities=12% Similarity=-0.029 Sum_probs=20.4
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 002980 584 TAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLN 625 (861)
Q Consensus 584 elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ 625 (861)
.++.++..+++||..++.+...+..+++.|+...+.++..++
T Consensus 96 llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~k 137 (1265)
T KOG0976|consen 96 LLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKK 137 (1265)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444444444444444444444443
No 146
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.38 E-value=0.022 Score=52.68 Aligned_cols=66 Identities=9% Similarity=0.086 Sum_probs=54.2
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHh-------cCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHH
Q 002980 407 QKYSKVFMEVDTDRDGRITGEQARNLFMS-------WRLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMERY 473 (861)
Q Consensus 407 ~~Y~~iF~~lD~d~dG~Isg~ea~~~f~k-------sgLp~e~L~~IW~LaD~d~dG~LdkdEF~vAMhLI~~~ 473 (861)
...-.+|.++-.+ ++.++..|++.++.+ ..-....|++|+...|.|+||.|||.||+..+.-|..+
T Consensus 8 ~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~a 80 (91)
T cd05024 8 EKMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLIA 80 (91)
T ss_pred HHHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 4566789999744 669999999988853 34578999999999999999999999998877765543
No 147
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.37 E-value=0.1 Score=61.45 Aligned_cols=83 Identities=13% Similarity=0.185 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Q 002980 599 SREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEI----------ASKLTIEDAKFRE 668 (861)
Q Consensus 599 sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~el----------EsQL~~lEa~L~d 668 (861)
++..+.-|+.=+.++...+..-++.|+.+++++...+.+++.|+++.++..++|+.+ ......++.+|++
T Consensus 271 L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~ 350 (581)
T KOG0995|consen 271 LQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNK 350 (581)
T ss_pred HHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 333445555556666666666777777777777777777777777777666655433 2333344444444
Q ss_pred HHHHHHHHHHHHH
Q 002980 669 LQERKMELHQAIV 681 (861)
Q Consensus 669 ~Q~EL~eLqqeIq 681 (861)
++.++..|.+++-
T Consensus 351 i~~~~d~l~k~vw 363 (581)
T KOG0995|consen 351 IQSELDRLSKEVW 363 (581)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 148
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.35 E-value=0.19 Score=61.89 Aligned_cols=59 Identities=15% Similarity=0.061 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 002980 655 IASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTE 713 (861)
Q Consensus 655 lEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L~e 713 (861)
++.++..+.+..+.++.++.++++++.++-+...+...|+.+++..+.-.+.|...+.|
T Consensus 343 ~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e 401 (754)
T TIGR01005 343 LLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQ 401 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555544444456667777777777777777776666
No 149
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=96.27 E-value=0.004 Score=44.10 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=14.5
Q ss_pred HHHHHhhCCCCCCccCHHHHHHH
Q 002980 10 ESFFRRADLDGDGRISGAEAVAF 32 (861)
Q Consensus 10 ~~iF~~~D~DgDG~ISg~E~~~~ 32 (861)
+.+|+.+|.|+||+|+.+|+.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 45666666666666666666654
No 150
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=96.24 E-value=0.0053 Score=45.01 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=23.1
Q ss_pred HHHHHHHhhCCCCCCccCHHHHHHHHHh
Q 002980 408 KYSKVFMEVDTDRDGRITGEQARNLFMS 435 (861)
Q Consensus 408 ~Y~~iF~~lD~d~dG~Isg~ea~~~f~k 435 (861)
+|+.+|+.+|+|++|+|+.+|++.+|.+
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 5788899999999999999999988873
No 151
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=96.24 E-value=0.22 Score=53.72 Aligned_cols=69 Identities=22% Similarity=0.220 Sum_probs=31.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 613 LVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (861)
Q Consensus 613 L~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIq 681 (861)
+.....++..++..+++++...+.+++..+.++++....+....+.|.......+.....+.++..++.
T Consensus 61 ~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 129 (302)
T PF10186_consen 61 LKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELE 129 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444555555555444444444444444444333333344444444444444
No 152
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.22 E-value=0.17 Score=66.59 Aligned_cols=65 Identities=15% Similarity=0.239 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhHh
Q 002980 653 AEIASKLTIEDAKFRELQERKMELHQAIV-NMERGGSADGLLQVRADRIQSDLEELLKALTERCKK 717 (861)
Q Consensus 653 ~elEsQL~~lEa~L~d~Q~EL~eLqqeIq-kLe~~~~~n~~Lkera~~in~el~eL~~~L~e~~~~ 717 (861)
..++..|...|..+.++..++..|+..|. +|++...+-..|.+++.++..-...|..+++|.|++
T Consensus 1317 ~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1317 SRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQ 1382 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333332 233333333444444444444444455555554444
No 153
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=96.19 E-value=0.095 Score=56.13 Aligned_cols=47 Identities=13% Similarity=0.237 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 635 RREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (861)
Q Consensus 635 kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIq 681 (861)
+.+++.|..++..-..++..|...+..+|..+++++.+.++.+..|.
T Consensus 38 ~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~ 84 (230)
T PF10146_consen 38 RKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQ 84 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455556666666666666666666666666555
No 154
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.19 E-value=0.23 Score=61.44 Aligned_cols=97 Identities=15% Similarity=0.194 Sum_probs=65.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 585 AGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEI-------TERALADRREAETLGKKYEEKYKQVAEIAS 657 (861)
Q Consensus 585 lekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei-------~e~~s~~kreIesLr~k~ee~~kqv~elEs 657 (861)
+..++..+.-++.+...++..++++|+.+..+-..+..++.-+ ..++.-+..+++.||.++++...++.....
T Consensus 285 mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~ 364 (775)
T PF10174_consen 285 MKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQA 364 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3344666666676666667777777776666666555444433 345555667777788777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 658 KLTIEDAKFRELQERKMELHQAIV 681 (861)
Q Consensus 658 QL~~lEa~L~d~Q~EL~eLqqeIq 681 (861)
++..++.++...+.|+.+|+..+.
T Consensus 365 ~~~~~qeE~~~~~~Ei~~l~d~~d 388 (775)
T PF10174_consen 365 QIEKLQEEKSRLQGEIEDLRDMLD 388 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777776665
No 155
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=96.15 E-value=0.14 Score=59.63 Aligned_cols=129 Identities=16% Similarity=0.142 Sum_probs=80.5
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 585 AGKKVDEREKVILDSREKIEFYRSKMQELVLYK----SRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLT 660 (861)
Q Consensus 585 lekela~Le~qi~~sree~e~LrsQlQEL~~~K----sr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~ 660 (861)
|..+|..++.++..+|.+...|+..---...++ +.|.++|++++.++.....+|+...++....+..+..+.++|.
T Consensus 164 L~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~ 243 (596)
T KOG4360|consen 164 LQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLV 243 (596)
T ss_pred HHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444433322222222 3688899988888887777777777777777777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc----cCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 002980 661 IEDAKFRELQERKMELHQAIVNMER----GGSADGLLQVRADRIQSDLEELLKALTE 713 (861)
Q Consensus 661 ~lEa~L~d~Q~EL~eLqqeIqkLe~----~~~~n~~Lkera~~in~el~eL~~~L~e 713 (861)
.+..+++-+.-|+++|.+=|+.+.. ...+.+.|+++....-.++.|-++-|+.
T Consensus 244 d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~ 300 (596)
T KOG4360|consen 244 DLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKC 300 (596)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888887777777776663322 2335556666665555555555555543
No 156
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=96.11 E-value=0.17 Score=58.26 Aligned_cols=15 Identities=33% Similarity=0.271 Sum_probs=7.5
Q ss_pred HHHHHHHHHhhCCCC
Q 002980 440 REVLKQVWDLSDQDS 454 (861)
Q Consensus 440 ~e~L~~IW~LaD~d~ 454 (861)
+.++++|++-.+...
T Consensus 79 ~~v~~~Vi~~l~l~~ 93 (444)
T TIGR03017 79 DRVAKKVVDKLKLDE 93 (444)
T ss_pred HHHHHHHHHHcCCCC
Confidence 444555555554443
No 157
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.10 E-value=0.22 Score=60.25 Aligned_cols=122 Identities=17% Similarity=0.241 Sum_probs=60.6
Q ss_pred hhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH----------------HHHHHHHHhHHHHHHHHHH
Q 002980 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLN----------------EITERALADRREAETLGKK 644 (861)
Q Consensus 581 E~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~----------------ei~e~~s~~kreIesLr~k 644 (861)
+...+..++..+..++..++++.+....+.++|+..-.++.+.+. .+..++..+..+++.|..+
T Consensus 23 e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~q 102 (617)
T PF15070_consen 23 ESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQ 102 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555556666655555544444444444444333332222 1123333445555555555
Q ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-------chhhHHHHHHHHHH
Q 002980 645 YEEKYKQV-------AEIASKLTIEDAKFRELQERKMELHQAIVNMERGGS-------ADGLLQVRADRIQS 702 (861)
Q Consensus 645 ~ee~~kqv-------~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~-------~n~~Lkera~~in~ 702 (861)
++.+.++. .+.+++|..+|..|++.+.+..+...=++.|+.++. .|..||+++..++.
T Consensus 103 lqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~ 174 (617)
T PF15070_consen 103 LQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQD 174 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHH
Confidence 55443322 234455555566666655555444443444444332 67777777777655
No 158
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.09 E-value=0.26 Score=58.21 Aligned_cols=141 Identities=13% Similarity=0.165 Sum_probs=88.1
Q ss_pred hhhHHhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 581 DSTTAGKKVDEREKVILDSRE---KIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIAS 657 (861)
Q Consensus 581 E~~elekela~Le~qi~~sre---e~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEs 657 (861)
++..++++.++|..+|...+. +.+.++++...|+.--.+.+.-++.++.+.......++.|..+|+++..+++.|..
T Consensus 236 ~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~ 315 (581)
T KOG0995|consen 236 EIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQK 315 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777778777764222 36677777777766666666666666666666677777777777776666666665
Q ss_pred HHHHH----------HHHHHHHHHHHHHHHHHHHHHhcc----CcchhhHHHHHHHHHHHHHHHHHHHHHHhHhcCcc
Q 002980 658 KLTIE----------DAKFRELQERKMELHQAIVNMERG----GSADGLLQVRADRIQSDLEELLKALTERCKKHGID 721 (861)
Q Consensus 658 QL~~l----------Ea~L~d~Q~EL~eLqqeIqkLe~~----~~~n~~Lkera~~in~el~eL~~~L~e~~~~~g~~ 721 (861)
+...+ -++++....|.++|..+|.++... .++.-.++-.|+..=.++..+--.++....+.++.
T Consensus 316 ~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~ 393 (581)
T KOG0995|consen 316 ENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLG 393 (581)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444 355666677777777777744333 33344444444444444555555556666666665
No 159
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.09 E-value=0.34 Score=55.86 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHH
Q 002980 699 RIQSDLEELLKALTE 713 (861)
Q Consensus 699 ~in~el~eL~~~L~e 713 (861)
.+|+++...++.|.|
T Consensus 214 ~l~~~l~~~q~~l~e 228 (420)
T COG4942 214 QLNSELSADQKKLEE 228 (420)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555555
No 160
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.08 E-value=0.22 Score=61.95 Aligned_cols=22 Identities=23% Similarity=0.521 Sum_probs=8.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 002980 691 GLLQVRADRIQSDLEELLKALT 712 (861)
Q Consensus 691 ~~Lkera~~in~el~eL~~~L~ 712 (861)
..|.-.++.+..+..+++..|+
T Consensus 853 ~~l~~kv~~~~~~~~~~~~el~ 874 (1174)
T KOG0933|consen 853 GNLEAKVDKVEKDVKKAQAELK 874 (1174)
T ss_pred HHHHHHHHhHHhHHHHHHHHHH
Confidence 3333334444444444444443
No 161
>PRK01156 chromosome segregation protein; Provisional
Probab=96.08 E-value=0.17 Score=63.52 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=10.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Q 002980 689 ADGLLQVRADRIQSDLEELLKALT 712 (861)
Q Consensus 689 ~n~~Lkera~~in~el~eL~~~L~ 712 (861)
+...|+.++..++..+.+|++.+.
T Consensus 424 ~i~~l~~~i~~l~~~~~el~~~~~ 447 (895)
T PRK01156 424 KVSSLNQRIRALRENLDELSRNME 447 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 162
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.07 E-value=0.18 Score=59.77 Aligned_cols=97 Identities=19% Similarity=0.189 Sum_probs=43.6
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhhHHHHHHHHHhHHHHHH-------HHHHHHHHHH
Q 002980 585 AGKKVDEREKVILDSREKIEFYRSKMQELVLYKSR-------CDNRLNEITERALADRREAET-------LGKKYEEKYK 650 (861)
Q Consensus 585 lekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr-------~e~~L~ei~e~~s~~kreIes-------Lr~k~ee~~k 650 (861)
..++.+.++.+|.+++++++.|+.++.+.+.-... .+..|+++..+...+++.+.. |+++..-...
T Consensus 104 ~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~ 183 (546)
T KOG0977|consen 104 TARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLRE 183 (546)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 33444555556666666666666666555332222 223333333333333333333 3333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 651 QVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (861)
Q Consensus 651 qv~elEsQL~~lEa~L~d~Q~EL~eLqqeIq 681 (861)
++..+-.+|...-.-..+.+.+.+.|.++|.
T Consensus 184 ~l~~~r~~ld~Etllr~d~~n~~q~Lleel~ 214 (546)
T KOG0977|consen 184 ELARARKQLDDETLLRVDLQNRVQTLLEELA 214 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3333333333333333455556666666665
No 163
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.05 E-value=0.25 Score=60.64 Aligned_cols=45 Identities=24% Similarity=0.319 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002980 610 MQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAE 654 (861)
Q Consensus 610 lQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~e 654 (861)
.++++++..-.+++.+++++..+.+..+-..|-.||++.+||++.
T Consensus 412 ~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~ 456 (980)
T KOG0980|consen 412 VEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLES 456 (980)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555544455555555555554444444444455554444443
No 164
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=96.03 E-value=0.01 Score=59.06 Aligned_cols=57 Identities=21% Similarity=0.265 Sum_probs=48.3
Q ss_pred HHHHHhhCCCCCCccCHHHHHHHHH---hCCCCHHHH----HHHHHHhCCCCCCCcCHHHHHHH
Q 002980 10 ESFFRRADLDGDGRISGAEAVAFFQ---GSNLPKQVL----AQIWMHADHNHTSYLGRQEFYNA 66 (861)
Q Consensus 10 ~~iF~~~D~DgDG~ISg~E~~~~f~---~SgLp~~~L----~qIW~laD~d~DG~Ls~~EF~~A 66 (861)
.-.|+++|-|+|++|...++...+. +.+|+++.. .+|.+.+|.||||.|++.||-..
T Consensus 111 ~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~ 174 (189)
T KOG0038|consen 111 KYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHV 174 (189)
T ss_pred hheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Confidence 3468999999999999999877754 578998764 56788999999999999999765
No 165
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=96.03 E-value=0.18 Score=48.96 Aligned_cols=90 Identities=14% Similarity=0.133 Sum_probs=48.0
Q ss_pred hhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLT 660 (861)
Q Consensus 581 E~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~ 660 (861)
-+..+...|..++.++ ..++.++..|...|..+.++|-.+..+.. ++....+++....+++++++.+..
T Consensus 17 ~ve~L~s~lr~~E~E~-------~~l~~el~~l~~~r~~l~~Eiv~l~~~~e----~~~~~~~~~~~L~~el~~l~~ry~ 85 (120)
T PF12325_consen 17 LVERLQSQLRRLEGEL-------ASLQEELARLEAERDELREEIVKLMEENE----ELRALKKEVEELEQELEELQQRYQ 85 (120)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555 77777777777777777777765543332 233333333333344455555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002980 661 IEDAKFRELQERKMELHQAIV 681 (861)
Q Consensus 661 ~lEa~L~d~Q~EL~eLqqeIq 681 (861)
.+=.-|-.+-++.++|+..|+
T Consensus 86 t~LellGEK~E~veEL~~Dv~ 106 (120)
T PF12325_consen 86 TLLELLGEKSEEVEELRADVQ 106 (120)
T ss_pred HHHHHhcchHHHHHHHHHHHH
Confidence 444444444455555554444
No 166
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.02 E-value=0.21 Score=63.95 Aligned_cols=66 Identities=20% Similarity=0.184 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc----CcchhhHHHHHHHHHHHHHHHHHHHHH-HhHhcCcccccc
Q 002980 660 TIEDAKFRELQERKMELHQAIVNMERG----GSADGLLQVRADRIQSDLEELLKALTE-RCKKHGIDVKSH 725 (861)
Q Consensus 660 ~~lEa~L~d~Q~EL~eLqqeIqkLe~~----~~~n~~Lkera~~in~el~eL~~~L~e-~~~~~g~~~~~~ 725 (861)
..+++++.-++.++..|+.++....+. +.+-+.++.++.+.+..+..|++++|+ |.+..--.++.+
T Consensus 176 ~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~ 246 (1109)
T PRK10929 176 TALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALEST 246 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666667777777777622222 225567888999999999999999988 444444444333
No 167
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.02 E-value=0.23 Score=62.67 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHH
Q 002980 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLG 642 (861)
Q Consensus 603 ~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr 642 (861)
...++.++++++....+.+..|+.+..++.+++.+++..+
T Consensus 386 ~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~ 425 (1293)
T KOG0996|consen 386 FESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKAR 425 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555544444444444444333
No 168
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=95.99 E-value=0.2 Score=62.93 Aligned_cols=98 Identities=19% Similarity=0.208 Sum_probs=60.0
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----chhh
Q 002980 624 LNEITERALADRREAETLGKKYE-------EKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGS----ADGL 692 (861)
Q Consensus 624 L~ei~e~~s~~kreIesLr~k~e-------e~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~----~n~~ 692 (861)
|.++.+++...+.+|..++..|- ..+++++.++++|.....+|.+++.++.+++..|...+.-+. ....
T Consensus 450 ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~ 529 (1041)
T KOG0243|consen 450 IEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEK 529 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444445555555555554 445566666666666666666666666666666553333222 4457
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCcc
Q 002980 693 LQVRADRIQSDLEELLKALTERCKKHGID 721 (861)
Q Consensus 693 Lkera~~in~el~eL~~~L~e~~~~~g~~ 721 (861)
|.+|+..++..+++.+.-+...-+++|-+
T Consensus 530 l~~~a~~l~~~~~~s~~d~s~l~~kld~~ 558 (1041)
T KOG0243|consen 530 LVDRATKLRRSLEESQDDLSSLFEKLDRK 558 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 77788888888888888887766666543
No 169
>PRK11281 hypothetical protein; Provisional
Probab=95.99 E-value=0.15 Score=65.40 Aligned_cols=114 Identities=14% Similarity=0.176 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHH
Q 002980 606 YRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKL---------------TIEDAKFRELQ 670 (861)
Q Consensus 606 LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL---------------~~lEa~L~d~Q 670 (861)
+++++.+++...++.++.|.+.+.+....+...+..++.+.+....+.+++.+| ..+++++.-++
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~ 205 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLN 205 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444555555444 33344555555
Q ss_pred HHHHHHHHHHH---HHhc-cCcchhhHHHHHHHHHHHHHHHHHHHHH-HhHhcC
Q 002980 671 ERKMELHQAIV---NMER-GGSADGLLQVRADRIQSDLEELLKALTE-RCKKHG 719 (861)
Q Consensus 671 ~EL~eLqqeIq---kLe~-~~~~n~~Lkera~~in~el~eL~~~L~e-~~~~~g 719 (861)
.+..-+++++. .|.+ .+.+-..++.++.+++..++.|++++++ |.+..-
T Consensus 206 ~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se 259 (1113)
T PRK11281 206 AQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSE 259 (1113)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555554 1111 2225566788888888889999999988 444333
No 170
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=95.98 E-value=0.33 Score=54.24 Aligned_cols=145 Identities=17% Similarity=0.201 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 587 KKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKF 666 (861)
Q Consensus 587 kela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L 666 (861)
.++++++.++.+++.+-+.+.+++++|+..+.+.++++.++..+.. .|..+.++..++...++-++...+.++
T Consensus 43 ~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~-------~l~~eE~~~~~~~n~~~~~l~~~~~e~ 115 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELE-------ELDEEEEEYWREYNELQLELIEFQEER 115 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666577777777777777766666665444433 333333333345555555555555556
Q ss_pred HHHHHHHHHHHHHHHHHhcc------------C-----c--c---hhhHHHHHHHHHHHHHHHHHHHHHHhHhcCccccc
Q 002980 667 RELQERKMELHQAIVNMERG------------G-----S--A---DGLLQVRADRIQSDLEELLKALTERCKKHGIDVKS 724 (861)
Q Consensus 667 ~d~Q~EL~eLqqeIqkLe~~------------~-----~--~---n~~Lkera~~in~el~eL~~~L~e~~~~~g~~~~~ 724 (861)
..++.++.-+...|.+|++- . . + ....+..-+.||+-+-++.=.|.-.++++|+++..
T Consensus 116 ~sl~~q~~~~~~~L~~L~ktNv~n~~F~I~hdG~fGTINGlRLGrl~~~~V~W~EINAA~Gq~~LLL~~la~~l~~~f~~ 195 (314)
T PF04111_consen 116 DSLKNQYEYASNQLDRLRKTNVYNDTFHIWHDGPFGTINGLRLGRLPNVPVEWNEINAAWGQTALLLQTLAKKLNFKFQR 195 (314)
T ss_dssp HHHHHHHHHHHHHHHCHHT--TTTTT--EEEETTEEEETTEEE--BTTB---HHHHHHHHHHHHHHHHHHHHHCT---SS
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhceeeEeecCCeeeECCeeeccCCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 66666666666666655541 1 1 2 33467889999999999999999999999999876
Q ss_pred cceeecCCCCCCCccc
Q 002980 725 HAVIELPFGWQPGIQE 740 (861)
Q Consensus 725 ~~~~e~p~gw~~~~~e 740 (861)
-.+| |+|=.--|..
T Consensus 196 y~l~--P~Gs~S~I~~ 209 (314)
T PF04111_consen 196 YRLV--PMGSFSKIEK 209 (314)
T ss_dssp EEEE----GGG-EEEE
T ss_pred ceeE--ecCCCCEEEE
Confidence 5543 6664444433
No 171
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.93 E-value=0.25 Score=51.86 Aligned_cols=86 Identities=15% Similarity=0.191 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 598 DSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYK---QVAEIASKLTIEDAKFRELQERKM 674 (861)
Q Consensus 598 ~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~k---qv~elEsQL~~lEa~L~d~Q~EL~ 674 (861)
.++++++.++.+.+.....-.+...+...+.+-+.....+++.|++++..-.+ .+..+..++..++.+|++++.+.+
T Consensus 31 sLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~e 110 (201)
T PF13851_consen 31 SLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHE 110 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555544444444444444444444444444444444444443333222 222333344444444444444444
Q ss_pred HHHHHHHHH
Q 002980 675 ELHQAIVNM 683 (861)
Q Consensus 675 eLqqeIqkL 683 (861)
.|++.+.+|
T Consensus 111 vL~qr~~kl 119 (201)
T PF13851_consen 111 VLEQRFEKL 119 (201)
T ss_pred HHHHHHHHH
Confidence 444444433
No 172
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.93 E-value=0.37 Score=59.74 Aligned_cols=130 Identities=20% Similarity=0.243 Sum_probs=64.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 586 GKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAK 665 (861)
Q Consensus 586 ekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~ 665 (861)
+.++..|..++......++-.+.+++.++..+++...+|.+++++.-..+++|..|.++|+....++.+=+.+|..+..-
T Consensus 342 qsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~R 421 (775)
T PF10174_consen 342 QSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKER 421 (775)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333455555555566666666666666666666566666666666655444333333333222222
Q ss_pred HH----------------HHHHHHHHHHHHHHHH----h-ccCcchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 002980 666 FR----------------ELQERKMELHQAIVNM----E-RGGSADGLLQVRADRIQSDLEELLKALTERC 715 (861)
Q Consensus 666 L~----------------d~Q~EL~eLqqeIqkL----e-~~~~~n~~Lkera~~in~el~eL~~~L~e~~ 715 (861)
|. ....++..+...|..+ + +...+...++..+..+..+++.|++.|.|+.
T Consensus 422 l~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~ 492 (775)
T PF10174_consen 422 LSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKE 492 (775)
T ss_pred HhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 22 2222222233322211 1 1123555666666677777777777777765
No 173
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.91 E-value=0.22 Score=60.32 Aligned_cols=102 Identities=13% Similarity=0.191 Sum_probs=54.5
Q ss_pred hhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 580 QDSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKL 659 (861)
Q Consensus 580 qE~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL 659 (861)
|++..+.+.+-.++.++...+.++..|+.+.++|+.+|...+.-+....+.+.+.+.+|+.++.+..++.+.+..-...|
T Consensus 85 qetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eI 164 (1265)
T KOG0976|consen 85 QETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDI 164 (1265)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHH
Confidence 44444555555555555555566666666666666666666666665555555566666666655555544444333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002980 660 TIEDAKFRELQERKMELHQAIV 681 (861)
Q Consensus 660 ~~lEa~L~d~Q~EL~eLqqeIq 681 (861)
.+.-..|+++-.+|.+++.+++
T Consensus 165 f~~~~~L~nk~~~lt~~~~q~~ 186 (1265)
T KOG0976|consen 165 FMIGEDLHDKNEELNEFNMEFQ 186 (1265)
T ss_pred HHHHHHHhhhhhHHhHHHHHHH
Confidence 3333344444444444443333
No 174
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.90 E-value=0.19 Score=56.20 Aligned_cols=97 Identities=21% Similarity=0.251 Sum_probs=61.4
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhccCcchhhHHHHHHH
Q 002980 622 NRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERK--MELHQAIVNMERGGSADGLLQVRADR 699 (861)
Q Consensus 622 ~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL--~eLqqeIqkLe~~~~~n~~Lkera~~ 699 (861)
..|.+.+++...++.+++.|++++.+...|++-+..+++..+......-... .+=+.-|.+||+...++..|+..++.
T Consensus 72 ~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs 151 (319)
T PF09789_consen 72 QLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQS 151 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777787888999999999999999999988888866644333322222 33334444555556666666666666
Q ss_pred HHHHHHHHHHHHHH-HhHhc
Q 002980 700 IQSDLEELLKALTE-RCKKH 718 (861)
Q Consensus 700 in~el~eL~~~L~e-~~~~~ 718 (861)
+=.+.+||+..-.. +||.+
T Consensus 152 ~lDEkeEl~~ERD~yk~K~~ 171 (319)
T PF09789_consen 152 LLDEKEELVTERDAYKCKAH 171 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 65555555543322 44443
No 175
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.90 E-value=0.27 Score=58.38 Aligned_cols=132 Identities=13% Similarity=0.162 Sum_probs=74.4
Q ss_pred hhhhHHhhhHHHHHHHHHHH-------HHH-------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHH
Q 002980 580 QDSTTAGKKVDEREKVILDS-------REK-------IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKY 645 (861)
Q Consensus 580 qE~~elekela~Le~qi~~s-------ree-------~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ 645 (861)
.++..+..+++++...+.+. +++ +..+..++.-+..-...|+.++..++.+...+..+|..+|+++
T Consensus 113 ~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 113 IEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 45555666666665555543 222 2233344444444455566666666666666666777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccC-cc-----hhhHHHHHHHHHHHHHHHHHHH
Q 002980 646 EEKYKQVAEIASKLTIEDAKFRELQERK-MELHQAIVNMERGG-SA-----DGLLQVRADRIQSDLEELLKAL 711 (861)
Q Consensus 646 ee~~kqv~elEsQL~~lEa~L~d~Q~EL-~eLqqeIqkLe~~~-~~-----n~~Lkera~~in~el~eL~~~L 711 (861)
+++.----..+.+++++..+|+-++... .+|.+++.+...+- .+ -..|+.-|+.|..+-+.....=
T Consensus 193 d~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~n 265 (546)
T KOG0977|consen 193 DDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQN 265 (546)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666667777777777777776332 22333333333333 11 1256777777777766655443
No 176
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=95.90 E-value=0.33 Score=55.83 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 002980 660 TIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTE 713 (861)
Q Consensus 660 ~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L~e 713 (861)
..+...+++++..+.++++++.++.....+...|+.+++....-.+.|...+.|
T Consensus 314 ~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e 367 (444)
T TIGR03017 314 RILKQREAELREALENQKAKVLELNRQRDEMSVLQRDVENAQRAYDAAMQRYTQ 367 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555544444445555555555555555555554444
No 177
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.89 E-value=0.2 Score=60.61 Aligned_cols=16 Identities=13% Similarity=0.298 Sum_probs=6.9
Q ss_pred hhhHHhhhHHHHHHHH
Q 002980 581 DSTTAGKKVDEREKVI 596 (861)
Q Consensus 581 E~~elekela~Le~qi 596 (861)
++..|.+++.+|..++
T Consensus 88 E~~~L~kElE~L~~ql 103 (617)
T PF15070_consen 88 EAEHLRKELESLEEQL 103 (617)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 178
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=95.89 E-value=0.027 Score=56.61 Aligned_cols=62 Identities=16% Similarity=0.367 Sum_probs=56.8
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHH
Q 002980 407 QKYSKVFMEVDTDRDGRITGEQARNLFMSW--RLPREVLKQVWDLSDQDSDSMLSLREFCFALY 468 (861)
Q Consensus 407 ~~Y~~iF~~lD~d~dG~Isg~ea~~~f~ks--gLp~e~L~~IW~LaD~d~dG~LdkdEF~vAMh 468 (861)
.-....|..+|.+++|+|..+.+|++|+.. ++..+++.++|+.+-+|..|.|++.+||.+|.
T Consensus 101 ~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 101 EVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 346788999999999999999999999976 69999999999999999999999999998764
No 179
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.87 E-value=0.25 Score=60.49 Aligned_cols=140 Identities=16% Similarity=0.163 Sum_probs=56.4
Q ss_pred hhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLT 660 (861)
Q Consensus 581 E~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~ 660 (861)
.+.+++.+|..+..++...+.+.+.|....++|..-....+.+-..+++.+.+.+..-..|-+.|.+....-=.++.||.
T Consensus 35 ~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs 114 (717)
T PF09730_consen 35 RILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVS 114 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 34444555555544444444444444444444333333333332222222222222222233333332222222333333
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHH-HHHhHhcCcccc
Q 002980 661 IE---DAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKAL-TERCKKHGIDVK 723 (861)
Q Consensus 661 ~l---Ea~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L-~e~~~~~g~~~~ 723 (861)
++ ..+|..++.|+..|++++.-|.....+...||+-+. ..|+|--+.| .||=+++.||--
T Consensus 115 ~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae---~qleEALesl~~EReqk~~LrkE 178 (717)
T PF09730_consen 115 VLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAE---KQLEEALESLKSEREQKNALRKE 178 (717)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 445555555555555555544333333333333221 2222222222 456666666643
No 180
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.86 E-value=0.12 Score=64.42 Aligned_cols=111 Identities=12% Similarity=0.226 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 599 SREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQ 678 (861)
Q Consensus 599 sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqq 678 (861)
++...+.|..++.+|+. ++. ++.++..++.-++..+..++-+++....++...+.+|.-.++.+...+-++.+++.
T Consensus 657 L~~~k~rl~eel~ei~~-~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r 732 (1141)
T KOG0018|consen 657 LKEKKERLLEELKEIQK-RRK---EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKR 732 (1141)
T ss_pred HHHHHHHHHHHHHHHHH-hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHH
Confidence 44444566666666666 333 55555555655666666666555555555555555555555555555555555555
Q ss_pred HHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhHhcCccc
Q 002980 679 AIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGIDV 722 (861)
Q Consensus 679 eIqkLe~~~~~n~~Lkera~~in~el~eL~~~L~e~~~~~g~~~ 722 (861)
.|+.. ..+-..|++|++.+...+ ..+.|++.||+.
T Consensus 733 ~l~~~---e~~~~~L~~~~n~ved~i------f~~f~~~igv~i 767 (1141)
T KOG0018|consen 733 KLQNR---EGEMKELEERMNKVEDRI------FKGFCRRIGVRI 767 (1141)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHH------HHHhhhhcCeee
Confidence 44422 223334444444443322 356888888873
No 181
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.85 E-value=0.38 Score=59.70 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=68.5
Q ss_pred hhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLT 660 (861)
Q Consensus 581 E~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~ 660 (861)
+..+++..|+.+.++|.+.-.+++.+..+||.++++...+..+...++..+...+.+...+...++-+.+.+..+...+.
T Consensus 679 ~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~ 758 (1200)
T KOG0964|consen 679 ELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLH 758 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 66778888888888888888888999999999999988888888888777777777777777666666666666665555
Q ss_pred HHHHHHHHHHHH
Q 002980 661 IEDAKFRELQER 672 (861)
Q Consensus 661 ~lEa~L~d~Q~E 672 (861)
.+++..+..+.+
T Consensus 759 ~~~~~~~~~e~e 770 (1200)
T KOG0964|consen 759 KLESQSNYFESE 770 (1200)
T ss_pred HHHHHHHhHHHH
Confidence 555444444443
No 182
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=95.85 E-value=0.0074 Score=42.73 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=22.2
Q ss_pred HHHHHHHhCCCCCCCcCHHHHHHHH
Q 002980 43 LAQIWMHADHNHTSYLGRQEFYNAL 67 (861)
Q Consensus 43 L~qIW~laD~d~DG~Ls~~EF~~Al 67 (861)
|.++|..+|.|+||.|+++||...|
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 5678999999999999999998753
No 183
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=95.84 E-value=0.45 Score=52.53 Aligned_cols=104 Identities=23% Similarity=0.266 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 593 EKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQER 672 (861)
Q Consensus 593 e~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~E 672 (861)
-.++..++.+...|+.+.++|-++-+.|-+.+ .+.-.+...+|++.++.-.++-+...++..+...+..++.+
T Consensus 164 ~aei~~lk~~~~e~~eki~~la~eaqe~he~m-------~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~e 236 (294)
T COG1340 164 KAEIDELKKKAREIHEKIQELANEAQEYHEEM-------IKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNE 236 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33343444444444444444444444444444 44555566666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhccCc------chhhHHHHHHHHHHH
Q 002980 673 KMELHQAIVNMERGGS------ADGLLQVRADRIQSD 703 (861)
Q Consensus 673 L~eLqqeIqkLe~~~~------~n~~Lkera~~in~e 703 (861)
|.+|+..|..|..... ....|++|+..|.-.
T Consensus 237 lre~~k~ik~l~~~~~~~~~~~~~ee~kera~ei~EK 273 (294)
T COG1340 237 LRELEKKIKALRAKEKAAKRREKREELKERAEEIYEK 273 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666664422111 223555555555443
No 184
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.83 E-value=0.16 Score=62.68 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHH---HhHhcCcc
Q 002980 663 DAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTE---RCKKHGID 721 (861)
Q Consensus 663 Ea~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L~e---~~~~~g~~ 721 (861)
+.++...+.+...|+.++.++++...+....+.++++++.+.+-.++.+.. |.+...+.
T Consensus 344 ~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~ 405 (754)
T TIGR01005 344 LMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQAASR 405 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555556666667777777666666666677777777777666665544 55554443
No 185
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.83 E-value=0.21 Score=60.77 Aligned_cols=61 Identities=11% Similarity=0.153 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHH
Q 002980 586 GKKVDEREKVILDSR-------EKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYE 646 (861)
Q Consensus 586 ekela~Le~qi~~sr-------ee~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~e 646 (861)
++.++.+.+.+.+.+ -+++.++++.++|.....+++.++.+..+.+++++++++.|+.++.
T Consensus 649 ~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 649 EKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444455555555433 3456666666667777777777777666777777777777776665
No 186
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.79 E-value=0.52 Score=56.10 Aligned_cols=59 Identities=14% Similarity=0.206 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 623 RLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (861)
Q Consensus 623 ~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIq 681 (861)
+|..+++.+..++..+++|+.+++.....+..+..+..........++.+|..++.+|.
T Consensus 296 ~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLe 354 (522)
T PF05701_consen 296 ELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELE 354 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Confidence 34444455556667777777777777777777776666666666666666666666665
No 187
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=95.77 E-value=0.026 Score=55.91 Aligned_cols=74 Identities=18% Similarity=0.382 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCC--HHHHHHHHHhhCCCCC----CccCHHHHHHHHHHHHHHh
Q 002980 401 MKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLP--REVLKQVWDLSDQDSD----SMLSLREFCFALYLMERYR 474 (861)
Q Consensus 401 ISpedk~~Y~~iF~~lD~d~dG~Isg~ea~~~f~ksgLp--~e~L~~IW~LaD~d~d----G~LdkdEF~vAMhLI~~~~ 474 (861)
.+++...+|+++|.-+|+.+||+|++.++-++|...|+. ..++.+. |-..+.+ -+|+|++|+-.+.-|...+
T Consensus 5 ~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~--l~~~~~~~~~~~rl~FE~fLpm~q~vaknk 82 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKV--LGQPKRREMNVKRLDFEEFLPMYQQVAKNK 82 (152)
T ss_pred cCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHH--HcCcccchhhhhhhhHHHHHHHHHHHHhcc
Confidence 467888999999999999999999999999999988765 4555554 4455555 8999999987766665554
Q ss_pred cC
Q 002980 475 EG 476 (861)
Q Consensus 475 ~G 476 (861)
.+
T Consensus 83 ~q 84 (152)
T KOG0030|consen 83 DQ 84 (152)
T ss_pred cc
Confidence 43
No 188
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.76 E-value=0.27 Score=59.06 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=11.9
Q ss_pred HHhhhhHHHHHHHHHhHHHHHHHHHH
Q 002980 619 RCDNRLNEITERALADRREAETLGKK 644 (861)
Q Consensus 619 r~e~~L~ei~e~~s~~kreIesLr~k 644 (861)
++...|..++++...+..+++.|+..
T Consensus 314 ~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 314 TLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444444444444444444444444
No 189
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.74 E-value=0.35 Score=53.76 Aligned_cols=124 Identities=15% Similarity=0.178 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 587 KKVDEREKVILDSREKIEFYRSKMQELV----LYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIE 662 (861)
Q Consensus 587 kela~Le~qi~~sree~e~LrsQlQEL~----~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~l 662 (861)
-.++.|...+..+.++-..||.+...|. .|-.+-.+-+.+.-.+....+..|..|..++..+..+....+.+|..+
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~L 239 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSL 239 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346666667667777667777766666 332232222333333444444555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 002980 663 DAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTE 713 (861)
Q Consensus 663 Ea~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L~e 713 (861)
-+.+-++|.++.++-.+=.+| +......|+.=+.++.+|.+|+....|
T Consensus 240 lsqivdlQ~r~k~~~~EnEeL---~q~L~~ske~Q~~L~aEL~elqdkY~E 287 (306)
T PF04849_consen 240 LSQIVDLQQRCKQLAAENEEL---QQHLQASKESQRQLQAELQELQDKYAE 287 (306)
T ss_pred HHHHHHHHHHHHHHhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555554443322 333444444445555555555555443
No 190
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=95.71 E-value=0.66 Score=48.42 Aligned_cols=101 Identities=17% Similarity=0.247 Sum_probs=55.0
Q ss_pred hhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHH--------------HHHH
Q 002980 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLG--------------KKYE 646 (861)
Q Consensus 581 E~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr--------------~k~e 646 (861)
++..+..+|..|+-++.+.++++..++.|+.++..-.-+.++..+-+.++..++...++.+. .+|+
T Consensus 5 ~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~e 84 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYE 84 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777888888888888888888888888776544444444434333333333333322 2444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 647 EKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (861)
Q Consensus 647 e~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIq 681 (861)
+....+.-+|..|..+|....-...+..+|..++.
T Consensus 85 EVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~ 119 (205)
T KOG1003|consen 85 EVARKLVIIEGELERAEERAEAAESQSEELEEDLR 119 (205)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443333333333344444444444
No 191
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.71 E-value=0.27 Score=56.57 Aligned_cols=64 Identities=11% Similarity=0.117 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--------chhhHHHHHHHHHHHHHHHHHHHHH
Q 002980 650 KQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGS--------ADGLLQVRADRIQSDLEELLKALTE 713 (861)
Q Consensus 650 kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~--------~n~~Lkera~~in~el~eL~~~L~e 713 (861)
+..+.+|.++..+...+++.+.||+.++++-..|-+.+. .++.+++..+....++++|++||+.
T Consensus 375 ~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 375 AEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444566666666666666666666666644444444433 2334444455555666666666655
No 192
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.70 E-value=0.52 Score=49.09 Aligned_cols=67 Identities=15% Similarity=0.052 Sum_probs=32.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchh
Q 002980 625 NEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADG 691 (861)
Q Consensus 625 ~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~~n~ 691 (861)
..+.++..++..+.+.|.+++.+.......+.-||-..|.-+......+++-...|..|..-+.+-.
T Consensus 105 ~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~ 171 (193)
T PF14662_consen 105 ETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYR 171 (193)
T ss_pred HHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333333334444444555555555555555555555555555555555555555544433333333
No 193
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=95.70 E-value=0.4 Score=50.39 Aligned_cols=131 Identities=17% Similarity=0.233 Sum_probs=81.5
Q ss_pred chhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 579 LQDSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASK 658 (861)
Q Consensus 579 ~qE~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQ 658 (861)
++...+.+.++..+.++|-.+|.++...+.++.........+...+. .-..+++....++......++-+..+
T Consensus 16 KqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~-------~K~~ELE~ce~ELqr~~~Ea~lLrek 88 (202)
T PF06818_consen 16 KQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLR-------TKQLELEVCENELQRKKNEAELLREK 88 (202)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-------HhhHhHHHhHHHHHHHhCHHHHhhhh
Confidence 45666777777777777766666666666666665555444444333 33455555555555555667777777
Q ss_pred HHHHHHHHHHHHHHHHHH---HHH--------HHHHhc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 002980 659 LTIEDAKFRELQERKMEL---HQA--------IVNMER--GGSADGLLQVRADRIQSDLEELLKALTERCK 716 (861)
Q Consensus 659 L~~lEa~L~d~Q~EL~eL---qqe--------IqkLe~--~~~~n~~Lkera~~in~el~eL~~~L~e~~~ 716 (861)
|..+|.++..++..+..+ ... -.++.. +......|+.++..+..+|..+.....++..
T Consensus 89 l~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~ 159 (202)
T PF06818_consen 89 LGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRS 159 (202)
T ss_pred hhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 777788887777777775 111 112212 1235667888888888888877776655443
No 194
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=95.70 E-value=0.37 Score=49.41 Aligned_cols=41 Identities=7% Similarity=0.084 Sum_probs=25.3
Q ss_pred HHHHHHHHHhccCc-chhhHHHHHHHHHHHHHHHHHHHHHHh
Q 002980 675 ELHQAIVNMERGGS-ADGLLQVRADRIQSDLEELLKALTERC 715 (861)
Q Consensus 675 eLqqeIqkLe~~~~-~n~~Lkera~~in~el~eL~~~L~e~~ 715 (861)
+.+++..+++..++ -+..+...+..+.++++.++-.+-.||
T Consensus 117 ~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~lr~~ 158 (177)
T PF07798_consen 117 RIREEQAKQELKIQELNNKIDTEIANLRTEIESLKWDTLRWL 158 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444 334566677788888888888777765
No 195
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.67 E-value=0.47 Score=61.77 Aligned_cols=18 Identities=11% Similarity=0.318 Sum_probs=7.8
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 002980 690 DGLLQVRADRIQSDLEEL 707 (861)
Q Consensus 690 n~~Lkera~~in~el~eL 707 (861)
...|++++..++.+|...
T Consensus 773 I~~l~~~i~~L~~~l~~i 790 (1201)
T PF12128_consen 773 IQQLKQEIEQLEKELKRI 790 (1201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 196
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.66 E-value=0.22 Score=61.08 Aligned_cols=17 Identities=29% Similarity=0.284 Sum_probs=11.2
Q ss_pred cccccccchhhhhhccc
Q 002980 738 IQEGAGVWDEDWDKFED 754 (861)
Q Consensus 738 ~~e~a~~w~e~wd~~~d 754 (861)
-||.+++.|----||-|
T Consensus 516 aqet~yDrdqTI~KfRe 532 (1243)
T KOG0971|consen 516 AQETVYDRDQTIKKFRE 532 (1243)
T ss_pred HHHHHHhHHHHHHHHHH
Confidence 46777777766666644
No 197
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.65 E-value=0.18 Score=52.35 Aligned_cols=76 Identities=20% Similarity=0.205 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 604 EFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQA 679 (861)
Q Consensus 604 e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqe 679 (861)
-.+..+++++...-.....+|.++..++..++.++..|..++.++.+.+..+.+.+..+.-+++-++.++..|+.|
T Consensus 98 ~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~E 173 (194)
T PF08614_consen 98 VELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEE 173 (194)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444433333344444444444444444444444444444444444444444444444444444444433
No 198
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=95.64 E-value=0.41 Score=51.83 Aligned_cols=55 Identities=9% Similarity=0.140 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcch-hhHHHHHHHHHHHHHHHHHHHHH
Q 002980 659 LTIEDAKFRELQERKMELHQAIVNMERGGSAD-GLLQVRADRIQSDLEELLKALTE 713 (861)
Q Consensus 659 L~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~~n-~~Lkera~~in~el~eL~~~L~e 713 (861)
...++.++..++.=|...+..+++..+..+.. ..+++++...+.+|..|+..|++
T Consensus 148 ~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~e 203 (264)
T PF06008_consen 148 RQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNE 203 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554332222222 45677778888888888888876
No 199
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=95.63 E-value=0.15 Score=58.09 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 653 AEIASKLTIEDAKFRELQERKMELHQAI 680 (861)
Q Consensus 653 ~elEsQL~~lEa~L~d~Q~EL~eLqqeI 680 (861)
+.+-.+++..|.+|+++|+|..+|.++.
T Consensus 44 ~ai~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 44 RAIKAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444333
No 200
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.63 E-value=0.35 Score=57.95 Aligned_cols=71 Identities=17% Similarity=0.168 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------CcchhhHHHHHHHHHHHHHHHHHHH--HHHhHh
Q 002980 651 QVAEIASKLTIEDAKFRELQERKMELHQAIVNMERG-----------GSADGLLQVRADRIQSDLEELLKAL--TERCKK 717 (861)
Q Consensus 651 qv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~-----------~~~n~~Lkera~~in~el~eL~~~L--~e~~~~ 717 (861)
+|..+++.+..++.-|+++.+--..+++.|.+|..- +..-..|+.+++.+|..++++..-| ..|.|+
T Consensus 496 ~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQ 575 (961)
T KOG4673|consen 496 LITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQ 575 (961)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhh
Confidence 455555555555555555544444444455433221 1133456677777777777777633 445553
Q ss_pred cCcc
Q 002980 718 HGID 721 (861)
Q Consensus 718 ~g~~ 721 (861)
-..|
T Consensus 576 dear 579 (961)
T KOG4673|consen 576 DEAR 579 (961)
T ss_pred hHHH
Confidence 3333
No 201
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=95.63 E-value=0.43 Score=47.43 Aligned_cols=92 Identities=17% Similarity=0.202 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh
Q 002980 606 YRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV-NME 684 (861)
Q Consensus 606 LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIq-kLe 684 (861)
+..++..+.....++...+..+++++.+.++++..+..+.....+++..++..+..+..+++.++.-+++...+.. .+.
T Consensus 57 l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~r 136 (151)
T PF11559_consen 57 LSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELR 136 (151)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444444444444444444444444444444444444444444444444444443333 222
Q ss_pred ccCcchhhHHHHH
Q 002980 685 RGGSADGLLQVRA 697 (861)
Q Consensus 685 ~~~~~n~~Lkera 697 (861)
..-.+...||+|+
T Consensus 137 kke~E~~kLk~rL 149 (151)
T PF11559_consen 137 KKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHh
Confidence 2223444555544
No 202
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.63 E-value=0.5 Score=59.45 Aligned_cols=27 Identities=15% Similarity=0.073 Sum_probs=12.1
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHH
Q 002980 621 DNRLNEITERALADRREAETLGKKYEE 647 (861)
Q Consensus 621 e~~L~ei~e~~s~~kreIesLr~k~ee 647 (861)
+..+....+++.++.+.++.|+.++.+
T Consensus 1611 E~~~~~a~q~~~eL~~~~e~lk~~~~q 1637 (1758)
T KOG0994|consen 1611 EKLATSATQQLGELETRMEELKHKAAQ 1637 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444443
No 203
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=95.60 E-value=0.24 Score=53.18 Aligned_cols=105 Identities=17% Similarity=0.219 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 604 EFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNM 683 (861)
Q Consensus 604 e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkL 683 (861)
..++.+..+|+..|.+..+++..++ ....-|+.++ +..+.|.+.=....++|+++.+.++.|+..|.++
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~~~e----~ee~~L~e~~-------kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa 72 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVESLE----NEEKCLEEYR-------KEMEELLQERMAHVEELRQINQDINTLENIIKQA 72 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666665555554433 2233344444 3444444444444555555555555555555533
Q ss_pred hccCcchhhHHHHHHHHHHHHHHHHHHHHHHhHh-cCccc
Q 002980 684 ERGGSADGLLQVRADRIQSDLEELLKALTERCKK-HGIDV 722 (861)
Q Consensus 684 e~~~~~n~~Lkera~~in~el~eL~~~L~e~~~~-~g~~~ 722 (861)
..+....++.|.+...++..|+.++++.-+. +||..
T Consensus 73 ---~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl~~ 109 (230)
T PF10146_consen 73 ---ESERNKRQEKIQRLYEEYKPLKDEINELRKEYLGLEP 109 (230)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 2233446666666666777777777774444 67654
No 204
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.59 E-value=0.2 Score=57.73 Aligned_cols=136 Identities=15% Similarity=0.160 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002980 606 YRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMER 685 (861)
Q Consensus 606 LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~ 685 (861)
|..-+..|..++++--..+..++.+|...+.+|+.|+.++++..+||...- +--+.+....+|..+|-.+|.++.-
T Consensus 314 ~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~----Is~e~fe~mn~Ere~L~reL~~i~~ 389 (622)
T COG5185 314 YENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQG----ISTEQFELMNQEREKLTRELDKINI 389 (622)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333333333334444444444444444444444444444433333332211 0022333334444455555553322
Q ss_pred cCcch-hhHHHHHHHHHHHHHHHHHHH---HHHhHhcCcc----------ccccceeecCCCCCCCcccccccc
Q 002980 686 GGSAD-GLLQVRADRIQSDLEELLKAL---TERCKKHGID----------VKSHAVIELPFGWQPGIQEGAGVW 745 (861)
Q Consensus 686 ~~~~n-~~Lkera~~in~el~eL~~~L---~e~~~~~g~~----------~~~~~~~e~p~gw~~~~~e~a~~w 745 (861)
...++ ...++|-..+|...++|.+.| +...+..|++ +--.+-+|.||--.-||=+.---.
T Consensus 390 ~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~~i~~~~nd~~l~iN~E~~~~~~sg~~~~I~~~ 463 (622)
T COG5185 390 QSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKS 463 (622)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhhcCCCCceeeccccCCccccCchHhHHHH
Confidence 22211 233444444444444444433 3334444443 333445577777666665544333
No 205
>PF13514 AAA_27: AAA domain
Probab=95.59 E-value=0.54 Score=60.70 Aligned_cols=90 Identities=20% Similarity=0.234 Sum_probs=66.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHH
Q 002980 633 ADRREAETLGKKYEEKYKQVAEIASKLTIE-------------DAKFRELQERKMELHQAIVNMERGGSADGLLQVRADR 699 (861)
Q Consensus 633 ~~kreIesLr~k~ee~~kqv~elEsQL~~l-------------Ea~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~ 699 (861)
...+++..++.+++...+++...+.++..+ +..+..++..+.+.++...+++....+...+++++..
T Consensus 740 ~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~ 819 (1111)
T PF13514_consen 740 EALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERERLQEQLEELEEELEQ 819 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666433 3567777777777777777777777788888888889
Q ss_pred HHHHHHHHHHHHHHHhHhcCccc
Q 002980 700 IQSDLEELLKALTERCKKHGIDV 722 (861)
Q Consensus 700 in~el~eL~~~L~e~~~~~g~~~ 722 (861)
+..++.+++..+.+.|...|+..
T Consensus 820 ~~~~l~~~~~~l~~L~~~a~~~~ 842 (1111)
T PF13514_consen 820 AEEELEELEAELAELLEQAGVED 842 (1111)
T ss_pred HHHHHHHHHHHHHHHHHhccCCC
Confidence 99999999999999998888754
No 206
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=95.57 E-value=0.0048 Score=58.89 Aligned_cols=64 Identities=19% Similarity=0.306 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHH
Q 002980 402 KPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCF 465 (861)
Q Consensus 402 Spedk~~Y~~iF~~lD~d~dG~Isg~ea~~~f~ksgLp~e~L~~IW~LaD~d~dG~LdkdEF~v 465 (861)
....+....=.|..+|+|+||+|+..|++.+.....-++.=+....+-||.|+||.|++.|++.
T Consensus 49 ~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 49 YSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 4455566666799999999999999999988776666666789999999999999999999874
No 207
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.55 E-value=1.2 Score=47.25 Aligned_cols=23 Identities=17% Similarity=0.123 Sum_probs=11.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH
Q 002980 689 ADGLLQVRADRIQSDLEELLKAL 711 (861)
Q Consensus 689 ~n~~Lkera~~in~el~eL~~~L 711 (861)
+...|+..++..+..+..|.++|
T Consensus 162 e~~aLqa~lkk~e~~~~SLe~~L 184 (207)
T PF05010_consen 162 ELLALQASLKKEEMKVQSLEESL 184 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555444444
No 208
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=95.53 E-value=0.66 Score=47.37 Aligned_cols=37 Identities=14% Similarity=0.079 Sum_probs=17.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHhcCcccccc
Q 002980 689 ADGLLQVRADRIQSDLEELLKALTERCKKHGIDVKSH 725 (861)
Q Consensus 689 ~n~~Lkera~~in~el~eL~~~L~e~~~~~g~~~~~~ 725 (861)
....+++++..+..+.+.+.+.+.+.-.+.|+-..|.
T Consensus 106 ~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ 142 (177)
T PF13870_consen 106 ELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPA 142 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH
Confidence 3334455555555555555555555444444444433
No 209
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.52 E-value=0.55 Score=58.50 Aligned_cols=40 Identities=23% Similarity=0.279 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 642 GKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (861)
Q Consensus 642 r~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIq 681 (861)
.+++++...+++++...|..-.-++..+..++.+|+.+++
T Consensus 480 ~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~k 519 (1195)
T KOG4643|consen 480 EAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYK 519 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444443333334444444444444333
No 210
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=95.51 E-value=0.67 Score=49.91 Aligned_cols=66 Identities=9% Similarity=0.075 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 606 YRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQE 671 (861)
Q Consensus 606 LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~ 671 (861)
.+++..++...+.+...++..++.++..++...+.+.+.++++.+.+++++.++...+...+.+.-
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p 105 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP 105 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445544444443444444444444444444444444444444444444433
No 211
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=95.47 E-value=0.51 Score=56.56 Aligned_cols=60 Identities=17% Similarity=0.296 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHH
Q 002980 652 VAEIASKLTIEDA-------KFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKAL 711 (861)
Q Consensus 652 v~elEsQL~~lEa-------~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L 711 (861)
+++++++|..++. .+.++...+.+++.+|..|+....+.+.|++++..+..++.++-..|
T Consensus 303 L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~L 369 (563)
T TIGR00634 303 LNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVAL 369 (563)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555544 45556666666777777666666666666666666666665444433
No 212
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.47 E-value=0.53 Score=59.48 Aligned_cols=54 Identities=20% Similarity=0.212 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 002980 663 DAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCK 716 (861)
Q Consensus 663 Ea~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L~e~~~ 716 (861)
+..|...+.+|..+...+..+++.+......+.+++....+++++.+++..++.
T Consensus 694 ~~el~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (908)
T COG0419 694 EEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALELLEE 747 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444434445556666666666666666655544433
No 213
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=95.47 E-value=0.86 Score=47.62 Aligned_cols=88 Identities=16% Similarity=0.184 Sum_probs=49.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----chhhHHHHHHHH
Q 002980 625 NEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGS----ADGLLQVRADRI 700 (861)
Q Consensus 625 ~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~----~n~~Lkera~~i 700 (861)
.++.+...-+..++.+|.++-+.-..+.+..+.+|..+...|+....+-......+++|+.-+. .+...++++..+
T Consensus 112 ~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~ 191 (205)
T KOG1003|consen 112 EELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEA 191 (205)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHH
Confidence 3333344444555555555555555555555555555555555555555555555666655444 444566666677
Q ss_pred HHHHHHHHHHHH
Q 002980 701 QSDLEELLKALT 712 (861)
Q Consensus 701 n~el~eL~~~L~ 712 (861)
..+|++....|+
T Consensus 192 ~~eLD~~~~~L~ 203 (205)
T KOG1003|consen 192 KKELDETLQELE 203 (205)
T ss_pred HHHHHHHHHHhh
Confidence 777776665554
No 214
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.46 E-value=0.5 Score=59.26 Aligned_cols=113 Identities=15% Similarity=0.274 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH------------HH-HHHH
Q 002980 599 SREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKL------------TI-EDAK 665 (861)
Q Consensus 599 sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL------------~~-lEa~ 665 (861)
++.+++.++..+.++++..++.++.++++..+++.++++|........+..+.+.++|+.| .. .|..
T Consensus 695 ~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~ 774 (1141)
T KOG0018|consen 695 SKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEERE 774 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHH
Confidence 4445666667777777777777788887778888888999988888888888888888887 11 1333
Q ss_pred H-HHHHHHHHHHHHHHHHHhccCc--chhhHHHHHHHHHHHHHHHHHHH
Q 002980 666 F-RELQERKMELHQAIVNMERGGS--ADGLLQVRADRIQSDLEELLKAL 711 (861)
Q Consensus 666 L-~d~Q~EL~eLqqeIqkLe~~~~--~n~~Lkera~~in~el~eL~~~L 711 (861)
+ +..-.++.+++.++.+|+-.++ .+..++.|+..+..+++.+++.+
T Consensus 775 ~~~~~a~k~~ef~~q~~~l~~~l~fe~~~d~~~~ve~~~~~v~~~~~~~ 823 (1141)
T KOG0018|consen 775 LQQEFAKKRLEFENQKAKLENQLDFEKQKDTQRRVERWERSVEDLEKEI 823 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhheecccHHHHHHHHHHHHHHHHHhH
Confidence 3 2223456677777777776555 55666666666666655555544
No 215
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=95.44 E-value=0.026 Score=64.12 Aligned_cols=67 Identities=21% Similarity=0.364 Sum_probs=59.8
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHhC--CCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHH
Q 002980 7 DQFESFFRRADLDGDGRISGAEAVAFFQGS--NLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVA 73 (861)
Q Consensus 7 ~~y~~iF~~~D~DgDG~ISg~E~~~~f~~S--gLp~~~L~qIW~laD~d~DG~Ls~~EF~~Al~Li~~a 73 (861)
.....+|..+|.+.||+|+.+|+.+.|+.. .|+++.+.+|++.+|.|+++.|+.+||..-+.|.-.+
T Consensus 82 ~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~s 150 (463)
T KOG0036|consen 82 LELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYPES 150 (463)
T ss_pred HHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCChh
Confidence 345678999999999999999999999875 5799999999999999999999999999998887754
No 216
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.40 E-value=0.2 Score=60.92 Aligned_cols=28 Identities=4% Similarity=0.185 Sum_probs=12.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 584 TAGKKVDEREKVILDSREKIEFYRSKMQ 611 (861)
Q Consensus 584 elekela~Le~qi~~sree~e~LrsQlQ 611 (861)
+++.++.+...+..+++++.+.|+.|+.
T Consensus 689 eL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 689 ELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333444433333344445555555554
No 217
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=95.39 E-value=1.2 Score=49.39 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=22.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 629 ERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (861)
Q Consensus 629 e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIq 681 (861)
.++..++.....+..++.+...++.++-.++..+=.....++.+..++.+++.
T Consensus 165 aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~v 217 (294)
T COG1340 165 AEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFV 217 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444444444444
No 218
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.38 E-value=0.02 Score=63.33 Aligned_cols=60 Identities=30% Similarity=0.417 Sum_probs=50.0
Q ss_pred HHHHHHhhCCCCCCccCHHHHHHHHHh---CCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHH
Q 002980 9 FESFFRRADLDGDGRISGAEAVAFFQG---SNLPKQVLAQIWMHADHNHTSYLGRQEFYNALK 68 (861)
Q Consensus 9 y~~iF~~~D~DgDG~ISg~E~~~~f~~---SgLp~~~L~qIW~laD~d~DG~Ls~~EF~~Al~ 68 (861)
-+.-|+.+|.|+||.++.+|+..||-= -.+-.-++.+-..-.|.|+||+|+.+||+.=|.
T Consensus 165 De~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~ 227 (325)
T KOG4223|consen 165 DEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLY 227 (325)
T ss_pred HHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHh
Confidence 456799999999999999999999852 245667788888999999999999999987643
No 219
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=95.38 E-value=0.31 Score=56.06 Aligned_cols=12 Identities=25% Similarity=0.468 Sum_probs=5.1
Q ss_pred HHHHHHHHHhhC
Q 002980 406 IQKYSKVFMEVD 417 (861)
Q Consensus 406 k~~Y~~iF~~lD 417 (861)
+..|-++-++.|
T Consensus 31 v~eyLkl~~~aD 42 (395)
T PF10267_consen 31 VAEYLKLASNAD 42 (395)
T ss_pred HHHHHHHhhhcc
Confidence 344444444433
No 220
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=95.36 E-value=0.73 Score=44.54 Aligned_cols=118 Identities=14% Similarity=0.226 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 590 DEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFREL 669 (861)
Q Consensus 590 a~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~ 669 (861)
.....++...+.+.+....++++|..|+....+.+.+...... .-..+.....=+......|..++..|..++..+..+
T Consensus 16 d~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~-~~~~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~ 94 (141)
T TIGR02473 16 EQAKLELAKAQAEFERLETQLQQLIKYREEYEQQALEKVGAGT-SALELSNYQRFIRQLDQRIQQQQQELALLQQEVEAK 94 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666688888888888888888777764322211 011222233333334466677777777777777777
Q ss_pred HHHHHHHHHHHHHHhccCc--chhhHHHHHHHHHHHHHHHH
Q 002980 670 QERKMELHQAIVNMERGGS--ADGLLQVRADRIQSDLEELL 708 (861)
Q Consensus 670 Q~EL~eLqqeIqkLe~~~~--~n~~Lkera~~in~el~eL~ 708 (861)
+.++.+-..+...||.... .....++..+.=+..+||+-
T Consensus 95 r~~l~~a~~~~k~lekL~ek~~~~~~~~~~r~EQk~lDE~a 135 (141)
T TIGR02473 95 RERLLEARRELKALEKLKEKKQKEYRAEEAKREQKEMDELA 135 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 7777777777776666554 55566666666677777764
No 221
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=95.35 E-value=1 Score=53.63 Aligned_cols=69 Identities=10% Similarity=0.130 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 611 QELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQA 679 (861)
Q Consensus 611 QEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqe 679 (861)
+++..+|.++++++++...++.+.+..+..-...++.+.+.++.-+.+|...+..|.+++.++.++.++
T Consensus 58 eE~~~~R~Ele~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e 126 (514)
T TIGR03319 58 EEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEE 126 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544433333333333332222233333333333344444444444444444333333
No 222
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=95.32 E-value=0.88 Score=43.33 Aligned_cols=19 Identities=11% Similarity=0.240 Sum_probs=9.4
Q ss_pred HHhhhHHHHHHHHHHHHHH
Q 002980 584 TAGKKVDEREKVILDSREK 602 (861)
Q Consensus 584 elekela~Le~qi~~sree 602 (861)
+++..++.|+..+++.+..
T Consensus 13 el~n~La~Le~slE~~K~S 31 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTS 31 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3455556666666443333
No 223
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=95.32 E-value=0.47 Score=51.81 Aligned_cols=80 Identities=20% Similarity=0.241 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 601 EKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAI 680 (861)
Q Consensus 601 ee~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeI 680 (861)
-++++||++|.++...+...++ -.....++....++++..+.+.+....+++..|..+..+...+.+++.+|.+|+.+-
T Consensus 166 vkV~WLR~~L~Ei~Ea~e~~~~-~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~ 244 (269)
T PF05278_consen 166 VKVDWLRSKLEEILEAKEIYDQ-HETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMES 244 (269)
T ss_pred cchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999877664432 111123333445666666655555555555554444444444444444444444444
Q ss_pred H
Q 002980 681 V 681 (861)
Q Consensus 681 q 681 (861)
.
T Consensus 245 ~ 245 (269)
T PF05278_consen 245 T 245 (269)
T ss_pred H
Confidence 3
No 224
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=95.31 E-value=0.86 Score=53.11 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH---HhHhcCccccccceeecCC
Q 002980 692 LLQVRADRIQSDLEELLKALTE---RCKKHGIDVKSHAVIELPF 732 (861)
Q Consensus 692 ~Lkera~~in~el~eL~~~L~e---~~~~~g~~~~~~~~~e~p~ 732 (861)
.++++++.++.++++++..|.. +..++-|++--.-.|-+-+
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~~I~AP~dG~V~~~~ 331 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDSQKGVIKAPEDGVLHLNP 331 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCEEECCCCeEEEecc
Confidence 4566666666777777666643 3444555555544454433
No 225
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.31 E-value=0.44 Score=58.03 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 638 AETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (861)
Q Consensus 638 IesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIq 681 (861)
++.|..++++..+++++++.++..++..+..++.++.+|+.++.
T Consensus 423 i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (650)
T TIGR03185 423 IAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLD 466 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444444444444444444443
No 226
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.30 E-value=0.5 Score=56.78 Aligned_cols=73 Identities=23% Similarity=0.264 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----chhhHHHHHHHHHHHHHHHHHHHH
Q 002980 640 TLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGS----ADGLLQVRADRIQSDLEELLKALT 712 (861)
Q Consensus 640 sLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~----~n~~Lkera~~in~el~eL~~~L~ 712 (861)
.+.+++++..++++.++..+......+..++.++.+|.+.+..+++.+. ....|+.....+...|.++++.|.
T Consensus 352 ~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~ 428 (569)
T PRK04778 352 QLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLH 428 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433333344444555555555543333222 222333333333444444444444
No 227
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=95.29 E-value=0.65 Score=42.68 Aligned_cols=103 Identities=12% Similarity=0.150 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVN 682 (861)
Q Consensus 603 ~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqk 682 (861)
.+.+..+++.|..++.++...+.... . .-.-..+.....-+......|..++.+|..++..+..++..+.+...+...
T Consensus 14 ~~~~~~~l~~L~~~~~~~~~~~~~~~-~-~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~ 91 (123)
T PF02050_consen 14 LQEAEEQLEQLQQERQEYQEQLSESQ-Q-GVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKK 91 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT------S-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555544444332 0 001122222332233333555555566666666666666666666666665
Q ss_pred HhccCc--chhhHHHHHHHHHHHHHHH
Q 002980 683 MERGGS--ADGLLQVRADRIQSDLEEL 707 (861)
Q Consensus 683 Le~~~~--~n~~Lkera~~in~el~eL 707 (861)
|+.... .....++..+.=+..++|+
T Consensus 92 ~e~L~e~~~~~~~~~~~r~Eq~~lDE~ 118 (123)
T PF02050_consen 92 LEKLKERRREEYQQEEERREQKELDEI 118 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544333 4445555555555555554
No 228
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.29 E-value=0.5 Score=58.76 Aligned_cols=90 Identities=19% Similarity=0.312 Sum_probs=51.5
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CcchhhHHHHHHH
Q 002980 624 LNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERG----GSADGLLQVRADR 699 (861)
Q Consensus 624 L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~----~~~n~~Lkera~~ 699 (861)
+++.+++.+.+..++++++.++.+...++.+++..|...+..+.+.-.+..+|.+++..|-.. =.+...|+.-|..
T Consensus 406 i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~ 485 (1200)
T KOG0964|consen 406 INDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIAN 485 (1200)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556666666666666666666666666544444444433333333333322111 2266678888888
Q ss_pred HHHHHHHHHHHHHH
Q 002980 700 IQSDLEELLKALTE 713 (861)
Q Consensus 700 in~el~eL~~~L~e 713 (861)
+..+|..-++.|+.
T Consensus 486 ~~~dl~~~~~~L~~ 499 (1200)
T KOG0964|consen 486 LEEDLSRAEKNLRA 499 (1200)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888754
No 229
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=95.25 E-value=0.66 Score=50.02 Aligned_cols=30 Identities=10% Similarity=-0.075 Sum_probs=13.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 632 LADRREAETLGKKYEEKYKQVAEIASKLTI 661 (861)
Q Consensus 632 s~~kreIesLr~k~ee~~kqv~elEsQL~~ 661 (861)
+.+++++..+++.+++..|-|.++|+.-.+
T Consensus 94 s~Leddlsqt~aikeql~kyiReLEQaNDd 123 (333)
T KOG1853|consen 94 SQLEDDLSQTHAIKEQLRKYIRELEQANDD 123 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 334444444444444444545554444333
No 230
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.25 E-value=0.63 Score=61.64 Aligned_cols=102 Identities=11% Similarity=0.186 Sum_probs=73.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 584 TAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIED 663 (861)
Q Consensus 584 elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lE 663 (861)
+..+.+..++.++.+++.++..++.++..+..++.=+..+++-+.+.+...++++.+|++.+....+.|...+..+..+-
T Consensus 651 E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s 730 (1822)
T KOG4674|consen 651 EKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLS 730 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777777778888888888888888778888888888888888888888888877777776666665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 002980 664 AKFRELQERKMELHQAIVNMER 685 (861)
Q Consensus 664 a~L~d~Q~EL~eLqqeIqkLe~ 685 (861)
.+|.....++..|..++..|.+
T Consensus 731 ~eL~~a~~k~~~le~ev~~LKq 752 (1822)
T KOG4674|consen 731 QELLSANEKLEKLEAELSNLKQ 752 (1822)
T ss_pred HHHHhhhHHHHHHHHHHHHHHH
Confidence 5555555555555555554433
No 231
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.17 E-value=1 Score=52.14 Aligned_cols=17 Identities=18% Similarity=0.473 Sum_probs=14.7
Q ss_pred CCCHHHHHHHHHHHHhh
Q 002980 400 KMKPSDIQKYSKVFMEV 416 (861)
Q Consensus 400 ~ISpedk~~Y~~iF~~l 416 (861)
+|+..|.-+|-.+|...
T Consensus 85 ~mt~~Dll~F~~~~~~~ 101 (493)
T KOG0804|consen 85 YMTSHDLLRFCASFIKQ 101 (493)
T ss_pred cccHHHHHHHHHHHhhh
Confidence 79999999999988753
No 232
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.16 E-value=0.72 Score=57.18 Aligned_cols=91 Identities=13% Similarity=0.194 Sum_probs=40.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 584 TAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIED 663 (861)
Q Consensus 584 elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lE 663 (861)
.++.+..+++..+.+..++++.++.++++++..-..+..+|...++.....+..+...+ .....++.++..+|
T Consensus 600 ~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~-------e~~e~le~~~~~~e 672 (769)
T PF05911_consen 600 KLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMK-------ESYESLETRLKDLE 672 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhhHHH
Confidence 33333444444444445555555555555555544444444444433333333333333 23333444444444
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002980 664 AKFRELQERKMELHQAIV 681 (861)
Q Consensus 664 a~L~d~Q~EL~eLqqeIq 681 (861)
++++.++.++..|+.+|+
T Consensus 673 ~E~~~l~~Ki~~Le~Ele 690 (769)
T PF05911_consen 673 AEAEELQSKISSLEEELE 690 (769)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444444
No 233
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=95.15 E-value=0.49 Score=50.93 Aligned_cols=27 Identities=37% Similarity=0.711 Sum_probs=13.9
Q ss_pred CCCCcccccccchhh---hhhcccCCCCccc
Q 002980 734 WQPGIQEGAGVWDED---WDKFEDAGFGNEI 761 (861)
Q Consensus 734 w~~~~~e~a~~w~e~---wd~~~d~~f~~~~ 761 (861)
++-.=-..+..||-. |..+.+ .|.++|
T Consensus 196 ~~t~Dg~~~g~~~~~~~~W~~l~~-~~~~~i 225 (251)
T PF11932_consen 196 YQTLDGSQAGVWDPATGQWQWLPD-SYRREI 225 (251)
T ss_pred eECCCccceeeecCCCCCCeECCH-HHHHHH
Confidence 333334455666643 777655 554433
No 234
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.13 E-value=1.6 Score=52.97 Aligned_cols=48 Identities=19% Similarity=0.240 Sum_probs=29.7
Q ss_pred hhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 002980 580 QDSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEI 627 (861)
Q Consensus 580 qE~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei 627 (861)
+|+.+++++|.++..+++...++++.++..+.++.....+...+..++
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~l 375 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEEL 375 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666677777777776666666666666666665555544444444
No 235
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=95.12 E-value=0.14 Score=54.15 Aligned_cols=75 Identities=23% Similarity=0.299 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 598 DSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELH 677 (861)
Q Consensus 598 ~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLq 677 (861)
++|+..+.++.+|++++.-|.++.. +++.|.++|++....++.++-..+.+|..|+.+-.+...|+
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~--------------eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~ 197 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLK--------------ELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLK 197 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Confidence 4444444555555555444443333 33344444444444445555455555555555555555555
Q ss_pred HHHHHHhcc
Q 002980 678 QAIVNMERG 686 (861)
Q Consensus 678 qeIqkLe~~ 686 (861)
.....|+.+
T Consensus 198 ~r~~ELe~~ 206 (290)
T COG4026 198 KRWDELEPG 206 (290)
T ss_pred HHHHHhccc
Confidence 555444443
No 236
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=95.11 E-value=0.82 Score=52.12 Aligned_cols=51 Identities=14% Similarity=0.118 Sum_probs=27.5
Q ss_pred hhHHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 002980 582 STTAGKKVDEREKVIL-DSREKIEFYRSKMQELVLYKSRCDNRLNEITERAL 632 (861)
Q Consensus 582 ~~elekela~Le~qi~-~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s 632 (861)
..+=..+++++--++. ..+......|..++++..++..+...+.+++....
T Consensus 193 ~~eWklEvERV~PqLKv~~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~ 244 (359)
T PF10498_consen 193 PAEWKLEVERVLPQLKVTIRADAKDWRSHLEQMKQHKKSIESALPETKSQLD 244 (359)
T ss_pred HHHHHHHHHHHhhhheeeccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3344455555544442 12333456677777777777766666665554433
No 237
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=95.10 E-value=0.59 Score=45.86 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 589 VDEREKVILDSREKIEFYRSKMQELVLYKSRC 620 (861)
Q Consensus 589 la~Le~qi~~sree~e~LrsQlQEL~~~Ksr~ 620 (861)
+..+..++..++.+++.+..++..|.....+.
T Consensus 8 l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~ 39 (140)
T PRK03947 8 LEELAAQLQALQAQIEALQQQLEELQASINEL 39 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555544444433
No 238
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=95.10 E-value=1.1 Score=45.67 Aligned_cols=71 Identities=15% Similarity=0.234 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--chhhHHHHHHHHHHHHHHHHHHHHHH
Q 002980 644 KYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGS--ADGLLQVRADRIQSDLEELLKALTER 714 (861)
Q Consensus 644 k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~--~n~~Lkera~~in~el~eL~~~L~e~ 714 (861)
++.....++...+..+..++..|...+.+...++..+.+|..... ..-.|=.-+.....++.+|++.+..|
T Consensus 92 ~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l 164 (177)
T PF13870_consen 92 ELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKEL 164 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444555555555555555555555555555555543222 33334333555666666666665553
No 239
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.08 E-value=1.1 Score=56.67 Aligned_cols=26 Identities=12% Similarity=0.181 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 590 DEREKVILDSREKIEFYRSKMQELVL 615 (861)
Q Consensus 590 a~Le~qi~~sree~e~LrsQlQEL~~ 615 (861)
++|..+-.+.+++.+.++.++++++.
T Consensus 1545 ~~L~s~A~~a~~~A~~v~~~ae~V~e 1570 (1758)
T KOG0994|consen 1545 ENLQSEAERARSRAEDVKGQAEDVVE 1570 (1758)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44444444444444444444444433
No 240
>PF15294 Leu_zip: Leucine zipper
Probab=95.04 E-value=0.68 Score=50.90 Aligned_cols=124 Identities=14% Similarity=0.193 Sum_probs=66.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH----------------HHHhHHHHHHHHHHHHHH
Q 002980 585 AGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITER----------------ALADRREAETLGKKYEEK 648 (861)
Q Consensus 585 lekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~----------------~s~~kreIesLr~k~ee~ 648 (861)
+.++|..|..+.+++|+++..+..+.-....-|.+++..|++++.. +..++..+..++.+++
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~e-- 207 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELE-- 207 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHH--
Confidence 3556666666666677777777777777777777777777766541 1122333333332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhccCc---chhhHHHHHHHHHHHHHHHHHHH
Q 002980 649 YKQVAEIASKLTIEDAKFRELQERKMELHQAIV----NMERGGS---ADGLLQVRADRIQSDLEELLKAL 711 (861)
Q Consensus 649 ~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIq----kLe~~~~---~n~~Lkera~~in~el~eL~~~L 711 (861)
+.+...+++...++.+|...+.++-.++..+. .||..-. .-..+++-+..-|..+.+|.+.|
T Consensus 208 -k~~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqqT~ay~NMk~~ltkKn~QiKeLRkrl 276 (278)
T PF15294_consen 208 -KALQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQTAAYRNMKEILTKKNEQIKELRKRL 276 (278)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCccHHHHHhHHHHHhccHHHHHHHHHh
Confidence 22334444555555566665555555555543 3333222 23345555555555565555544
No 241
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=95.01 E-value=0.49 Score=54.35 Aligned_cols=128 Identities=20% Similarity=0.234 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 002980 604 EFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV-- 681 (861)
Q Consensus 604 e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIq-- 681 (861)
+.|-+++++|+.....|...|.+++.++.++..+....-.+|-....++=+.+..|..+|+.+.=.+.++..|...+.
T Consensus 193 ~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ktNv~n 272 (447)
T KOG2751|consen 193 ERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKTNVFN 272 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 456677777888888888888888777776666666666677666667777778888888888888888888888776
Q ss_pred ---------HHhccCc-chh---hHHHHHHHHHHHHHHHHHHHHHHhHhcCccccccceeecCCC
Q 002980 682 ---------NMERGGS-ADG---LLQVRADRIQSDLEELLKALTERCKKHGIDVKSHAVIELPFG 733 (861)
Q Consensus 682 ---------kLe~~~~-~n~---~Lkera~~in~el~eL~~~L~e~~~~~g~~~~~~~~~e~p~g 733 (861)
.+-+... +.+ .....-+.||.-+.++.--|.-.|++.||.+-.-.+| |||
T Consensus 273 ~~F~I~~~G~fgtIN~FRLG~lp~~pVew~EINAA~GQ~vLLL~~l~~kig~~~~~y~lv--p~G 335 (447)
T KOG2751|consen 273 ATFHIWHDGEFGTINNFRLGRLPSVPVEWDEINAAWGQTVLLLHTLANKIGLNFVRYRLV--PMG 335 (447)
T ss_pred heeeEeecccccccccceeccccCCCcCHHHHHHHhhhHHHHHHHHHHhcCcccceeeee--ccc
Confidence 1111111 444 3446788999999999999999999999987655443 555
No 242
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.01 E-value=0.44 Score=58.76 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 587 KKVDEREKVILDSREK-IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLT 660 (861)
Q Consensus 587 kela~Le~qi~~sree-~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~ 660 (861)
+-++.+..++..-... -+.++.+...|..++.++..+|.++.+++..++..-+.|+.+|++-.+.-+.|..++.
T Consensus 543 ~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~ 617 (717)
T PF10168_consen 543 QATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVD 617 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555554332222 3466666666777777777777777776666666666666666555444444444443
No 243
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.99 E-value=0.67 Score=54.56 Aligned_cols=132 Identities=15% Similarity=0.151 Sum_probs=65.8
Q ss_pred hhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002980 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELV-------LYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVA 653 (861)
Q Consensus 581 E~~elekela~Le~qi~~sree~e~LrsQlQEL~-------~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~ 653 (861)
.|-+++.+|..+..++...+++.+.+.+.-+++. .++.+.-.+|++.+.+-+ .|-.+|.+....-=
T Consensus 108 kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~-------RllseYSELEEENI 180 (772)
T KOG0999|consen 108 KILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREA-------RLLSEYSELEEENI 180 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcc
Confidence 4556666666666666666666565555555443 344444444444443333 23333333222222
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHH-HHHHHHHHHhHhcCccc
Q 002980 654 EIASKLTIE---DAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLE-ELLKALTERCKKHGIDV 722 (861)
Q Consensus 654 elEsQL~~l---Ea~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~-eL~~~L~e~~~~~g~~~ 722 (861)
.++.+|..+ .-++..++.++..|++++.-|.....+...||+-+.. .|+ -|...-.||-+++.+|-
T Consensus 181 sLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAek---QlEEALeTlq~EReqk~alkk 250 (772)
T KOG0999|consen 181 SLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEK---QLEEALETLQQEREQKNALKK 250 (772)
T ss_pred hHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHH
Confidence 233333322 4456666777777777776554444455556554432 111 12223356666666653
No 244
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=94.98 E-value=0.82 Score=54.50 Aligned_cols=17 Identities=6% Similarity=0.098 Sum_probs=6.4
Q ss_pred hHHHHHHHHHHHHHHHH
Q 002980 692 LLQVRADRIQSDLEELL 708 (861)
Q Consensus 692 ~Lkera~~in~el~eL~ 708 (861)
.++..+.++...+..++
T Consensus 397 ~~k~E~e~~ka~i~t~E 413 (522)
T PF05701_consen 397 KAKEEAEQTKAAIKTAE 413 (522)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 245
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=94.98 E-value=0.58 Score=58.31 Aligned_cols=8 Identities=38% Similarity=0.796 Sum_probs=3.5
Q ss_pred eecCCCCC
Q 002980 728 IELPFGWQ 735 (861)
Q Consensus 728 ~e~p~gw~ 735 (861)
++||--|+
T Consensus 657 ~~lp~~fk 664 (1195)
T KOG4643|consen 657 RELPLEFK 664 (1195)
T ss_pred HhCchhhc
Confidence 34444443
No 246
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=94.97 E-value=0.66 Score=55.31 Aligned_cols=128 Identities=20% Similarity=0.256 Sum_probs=77.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 586 GKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAK 665 (861)
Q Consensus 586 ekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~ 665 (861)
-.+|.+|+.-|+.-++++..-...||+=..-. .++..++-.+-.+|..|+=+|.-..|+-.+.|.++...|..
T Consensus 138 gEKIrDLE~cie~kr~kLnatEEmLQqellsr-------tsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l 210 (861)
T KOG1899|consen 138 GEKIRDLETCIEEKRNKLNATEEMLQQELLSR-------TSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENL 210 (861)
T ss_pred hhhHHHHHHHHHHHHhhhchHHHHHHHHHHhh-------hhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHH
Confidence 35677777777766666555444444322222 22223334444555555555555555556666666555555
Q ss_pred HHHHH-HHHHHHHHHHH----HHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhHhcCc
Q 002980 666 FRELQ-ERKMELHQAIV----NMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGI 720 (861)
Q Consensus 666 L~d~Q-~EL~eLqqeIq----kLe~~~~~n~~Lkera~~in~el~eL~~~L~e~~~~~g~ 720 (861)
++.+. .+..++.+|-. +|...+.+...|+|+...-+.++..|..+|-.+....|.
T Consensus 211 ~qevn~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~~d~e 270 (861)
T KOG1899|consen 211 MQEVNQSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTLVQRLMADGE 270 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHHHHHHHHhhccc
Confidence 55543 33334433333 666666688888888888888888888888888777776
No 247
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.95 E-value=0.97 Score=44.02 Aligned_cols=89 Identities=12% Similarity=0.162 Sum_probs=48.6
Q ss_pred hhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLT 660 (861)
Q Consensus 581 E~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~ 660 (861)
.+..++.++..+..++.++..+.+.++.++=.|..... ++.....++..++.+++.|.++|+....-+.+-.+++.
T Consensus 24 ~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e----~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~ve 99 (120)
T PF12325_consen 24 QLRRLEGELASLQEELARLEAERDELREEIVKLMEENE----ELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVE 99 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 55556666666666665555544445444444443322 22222334445666666666666666666666666666
Q ss_pred HHHHHHHHHHHHH
Q 002980 661 IEDAKFRELQERK 673 (861)
Q Consensus 661 ~lEa~L~d~Q~EL 673 (861)
.+++.+.|++.-.
T Consensus 100 EL~~Dv~DlK~my 112 (120)
T PF12325_consen 100 ELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665543
No 248
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=94.92 E-value=0.48 Score=53.94 Aligned_cols=74 Identities=14% Similarity=0.258 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhc---cCcchhhHHHHHHHHHHH
Q 002980 634 DRREAETLGKKYEEKYKQVAEIASKL-------TIEDAKFRELQERKMELHQAIVNMER---GGSADGLLQVRADRIQSD 703 (861)
Q Consensus 634 ~kreIesLr~k~ee~~kqv~elEsQL-------~~lEa~L~d~Q~EL~eLqqeIqkLe~---~~~~n~~Lkera~~in~e 703 (861)
+...++.+.++|......+.+++.+. .....+|+++.++|++.+++++.-.. +..-.-.+|+-+..+..|
T Consensus 264 iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~E 343 (359)
T PF10498_consen 264 INNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQE 343 (359)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 34555556666666666666655555 44455555555555555555551111 122333555556666666
Q ss_pred HHHH
Q 002980 704 LEEL 707 (861)
Q Consensus 704 l~eL 707 (861)
+.+|
T Consensus 344 I~qM 347 (359)
T PF10498_consen 344 IKQM 347 (359)
T ss_pred HHHh
Confidence 6554
No 249
>PRK00106 hypothetical protein; Provisional
Probab=94.92 E-value=1.7 Score=52.01 Aligned_cols=11 Identities=18% Similarity=0.368 Sum_probs=6.1
Q ss_pred cccceeecCCC
Q 002980 723 KSHAVIELPFG 733 (861)
Q Consensus 723 ~~~~~~e~p~g 733 (861)
.-...|.||-.
T Consensus 224 ~tvs~v~lp~d 234 (535)
T PRK00106 224 QTITTVHLPDD 234 (535)
T ss_pred heeeeEEcCCh
Confidence 34456666653
No 250
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=94.91 E-value=0.77 Score=56.40 Aligned_cols=126 Identities=14% Similarity=0.124 Sum_probs=71.8
Q ss_pred hhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-H
Q 002980 580 QDSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIAS-K 658 (861)
Q Consensus 580 qE~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEs-Q 658 (861)
.|+..++.++.+...+..++......+++..+.|+.++.+.-.++++.+.+-..+-.+...|..+.=..+|+|..+-+ |
T Consensus 41 ~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQ 120 (717)
T PF09730_consen 41 NELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQ 120 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 355555555566666665555555566666666666666666666666555444444444555554455566665542 3
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHhccCc-chhhHHHHHHHHHHHHH
Q 002980 659 L--TIEDAKFRELQERKMELHQAIVNMERGGS-ADGLLQVRADRIQSDLE 705 (861)
Q Consensus 659 L--~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~-~n~~Lkera~~in~el~ 705 (861)
| ..+..+++.+.+|+.-|+.+++.+..... ....|.|=+..++.+-+
T Consensus 121 vefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~ERe 170 (717)
T PF09730_consen 121 VEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSERE 170 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 34456666666666666666665544444 45556666666665544
No 251
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=94.90 E-value=0.055 Score=68.82 Aligned_cols=68 Identities=21% Similarity=0.494 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhc--CC-------CHHHHHHHHHhhCCCCCCccCHHHHHHHHH
Q 002980 401 MKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSW--RL-------PREVLKQVWDLSDQDSDSMLSLREFCFALY 468 (861)
Q Consensus 401 ISpedk~~Y~~iF~~lD~d~dG~Isg~ea~~~f~ks--gL-------p~e~L~~IW~LaD~d~dG~LdkdEF~vAMh 468 (861)
+|.+....|.-+|+-+|++.+|.++..+.+.+|... .| |...++.|.+++|++.+|++++.+|+.+|-
T Consensus 2247 VtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi 2323 (2399)
T KOG0040|consen 2247 VTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMI 2323 (2399)
T ss_pred CCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHH
Confidence 688999999999999999999999999999999864 34 455899999999999999999999998874
No 252
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=94.90 E-value=0.58 Score=44.52 Aligned_cols=18 Identities=33% Similarity=0.206 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002980 696 RADRIQSDLEELLKALTE 713 (861)
Q Consensus 696 ra~~in~el~eL~~~L~e 713 (861)
|....+.+.+.|.-.|.|
T Consensus 87 r~~k~~~dka~lel~l~e 104 (107)
T PF09304_consen 87 RLLKAQKDKAILELKLAE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHh
Confidence 333334444444444443
No 253
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=94.90 E-value=2 Score=45.17 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=60.7
Q ss_pred hhhhHHhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhh----hh-HHHHHHHHHhHHHHHHHHHHHHH
Q 002980 580 QDSTTAGKKVDEREKVILD-------SREKIEFYRSKMQELVLYKSRCDN----RL-NEITERALADRREAETLGKKYEE 647 (861)
Q Consensus 580 qE~~elekela~Le~qi~~-------sree~e~LrsQlQEL~~~Ksr~e~----~L-~ei~e~~s~~kreIesLr~k~ee 647 (861)
|.+.+++..|..+...+.. ++.+++.+..+.+++..+-..+.. .| .+.-.++...+..+..|.+.|+.
T Consensus 30 q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~ 109 (221)
T PF04012_consen 30 QAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQ 109 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554443 333344444444444444333321 11 22224455566777778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 648 KYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (861)
Q Consensus 648 ~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIq 681 (861)
...++..+..+|..++..|.+++.+...|.....
T Consensus 110 ~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~ 143 (221)
T PF04012_consen 110 AEAQVEKLKEQLEELEAKLEELKSKREELKAREN 143 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888887766554
No 254
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=94.89 E-value=2.1 Score=45.03 Aligned_cols=43 Identities=7% Similarity=0.112 Sum_probs=20.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 002980 585 AGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEI 627 (861)
Q Consensus 585 lekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei 627 (861)
++..|.+++.+|.+.+..+.........|..+..++...+.+.
T Consensus 28 l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~ 70 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKW 70 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555544444444444444444444444333
No 255
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=94.87 E-value=0.49 Score=49.74 Aligned_cols=94 Identities=16% Similarity=0.213 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 604 EFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNM 683 (861)
Q Consensus 604 e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkL 683 (861)
..|++||.+.+. +++. --.+|=+||..+-+....+...+.++..++..++.+.-++...+.+++
T Consensus 13 sLLKqQLke~q~-------E~~~-------K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELq-- 76 (202)
T PF06818_consen 13 SLLKQQLKESQA-------EVNQ-------KDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQ-- 76 (202)
T ss_pred HHHHHHHHHHHH-------HHHH-------HHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHH--
Confidence 777777777664 2221 123333444444444466667777777777777777777777777777
Q ss_pred hccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 002980 684 ERGGSADGLLQVRADRIQSDLEELLKALTER 714 (861)
Q Consensus 684 e~~~~~n~~Lkera~~in~el~eL~~~L~e~ 714 (861)
....+...|++.+..+..++.+|+..|...
T Consensus 77 -r~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 77 -RKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred -HHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 445566789999999999999999988775
No 256
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.87 E-value=2 Score=50.83 Aligned_cols=127 Identities=19% Similarity=0.162 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 002980 591 EREKVILDSREKI-EFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIE------- 662 (861)
Q Consensus 591 ~Le~qi~~sree~-e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~l------- 662 (861)
-+..||.+....+ +.++.....|..+|.++.++|.+.+++...++.+-+.|.+.||+-...-+.++.+++.+
T Consensus 570 vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~ 649 (741)
T KOG4460|consen 570 VFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSE 649 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccccc
Confidence 3444444444433 37777888888888888999988888888888888888888888666666666666433
Q ss_pred -------H----HHHHHHHHHHHHHHHHHHHHh---------------ccCc-chhhHHHHHHHHHHHHHHHHHHHHHHh
Q 002980 663 -------D----AKFRELQERKMELHQAIVNME---------------RGGS-ADGLLQVRADRIQSDLEELLKALTERC 715 (861)
Q Consensus 663 -------E----a~L~d~Q~EL~eLqqeIqkLe---------------~~~~-~n~~Lkera~~in~el~eL~~~L~e~~ 715 (861)
| .+|..+-.+++.|...|+-+. ..++ .-..-..+.+.||+-|++|-....+..
T Consensus 650 lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~~~Q~~~iqsiL~~L~~~i~~~~ 729 (741)
T KOG4460|consen 650 LPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYILSAYQRKCIQSILKELGEHIREMV 729 (741)
T ss_pred CCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 223333344444444444111 1111 111113466777777777777776655
Q ss_pred Hh
Q 002980 716 KK 717 (861)
Q Consensus 716 ~~ 717 (861)
|+
T Consensus 730 k~ 731 (741)
T KOG4460|consen 730 KQ 731 (741)
T ss_pred HH
Confidence 54
No 257
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.86 E-value=0.4 Score=50.62 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=7.9
Q ss_pred hhhHHHHHHHHHHHHHH
Q 002980 586 GKKVDEREKVILDSREK 602 (861)
Q Consensus 586 ekela~Le~qi~~sree 602 (861)
...+..++.|+.+++++
T Consensus 92 ~~rlp~le~el~~l~~~ 108 (206)
T PRK10884 92 RTRVPDLENQVKTLTDK 108 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555444433
No 258
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.84 E-value=1 Score=56.40 Aligned_cols=93 Identities=17% Similarity=0.200 Sum_probs=44.8
Q ss_pred HHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHH
Q 002980 619 RCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRAD 698 (861)
Q Consensus 619 r~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~ 698 (861)
++-.+++.+.+.+......++.|+.+.++..++++.....+...-..++.+..++.+.+++++ +.+..++.||.++.
T Consensus 259 r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~---~~~~~le~lk~~~~ 335 (1072)
T KOG0979|consen 259 RAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVE---EKKNKLESLKKAAE 335 (1072)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 333344444333333333333444333333444444444444444444444444444444443 45666677777777
Q ss_pred HHHHHHHHHHHHHHHH
Q 002980 699 RIQSDLEELLKALTER 714 (861)
Q Consensus 699 ~in~el~eL~~~L~e~ 714 (861)
.-+..+...++-|.+.
T Consensus 336 ~rq~~i~~~~k~i~~~ 351 (1072)
T KOG0979|consen 336 KRQKRIEKAKKMILDA 351 (1072)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7776666666666443
No 259
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=94.83 E-value=0.73 Score=57.12 Aligned_cols=137 Identities=17% Similarity=0.214 Sum_probs=83.1
Q ss_pred hhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLT 660 (861)
Q Consensus 581 E~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~ 660 (861)
+....+.++..+.+++.++...+..|+.+++-+..-++..+..|.-.++....+...+..+..++.+....|..|+.+|.
T Consensus 611 ~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele 690 (769)
T PF05911_consen 611 ELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELE 690 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666777776777777777777777777777777777766666665666666666666666667777777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCc-------chhhHHH-HHHHHHHHHHHHHHHHHHHhHh
Q 002980 661 IEDAKFRELQERKMELHQAIVNMERGGS-------ADGLLQV-RADRIQSDLEELLKALTERCKK 717 (861)
Q Consensus 661 ~lEa~L~d~Q~EL~eLqqeIqkLe~~~~-------~n~~Lke-ra~~in~el~eL~~~L~e~~~~ 717 (861)
.....-.+.-.+-.+|+.+|...+.... ....-++ .|...-.+|+|=++-+....|+
T Consensus 691 ~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAECQeTI~sLGkQ 755 (769)
T PF05911_consen 691 KERALSEELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAECQETIASLGKQ 755 (769)
T ss_pred HHHhcchhhhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655555555666666666664433221 1122223 4555555566666655554443
No 260
>PRK09343 prefoldin subunit beta; Provisional
Probab=94.79 E-value=0.88 Score=44.13 Aligned_cols=44 Identities=11% Similarity=0.146 Sum_probs=27.5
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 002980 585 AGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEIT 628 (861)
Q Consensus 585 lekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~ 628 (861)
+..++.++-.+++.++.++..+..+.+.|+..+.+++.-++|+.
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~ 48 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELE 48 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666667777777777666666655555543
No 261
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=94.78 E-value=0.73 Score=51.49 Aligned_cols=55 Identities=11% Similarity=0.015 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHH
Q 002980 650 KQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKAL 711 (861)
Q Consensus 650 kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L 711 (861)
.++++.+.++..++..|+..+.++..++..+. ....++.++...+.+++..+..|
T Consensus 152 ~~~~~a~~~~~~a~~~l~~a~~~~~~~~~~~~-------~~~~~~a~~~~~~a~l~~a~~~l 206 (346)
T PRK10476 152 QQVDQARTAQRDAEVSLNQALLQAQAAAAAVG-------GVDALVAQRAAREAALAIAELHL 206 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhhhhHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555555555444444333 22334445555555555544443
No 262
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=94.78 E-value=1 Score=51.82 Aligned_cols=19 Identities=11% Similarity=0.247 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002980 695 VRADRIQSDLEELLKALTE 713 (861)
Q Consensus 695 era~~in~el~eL~~~L~e 713 (861)
+++..++.++.+++.+|.+
T Consensus 227 ~~~~~~~~~l~~~~~~l~~ 245 (421)
T TIGR03794 227 KELETVEARIKEARYEIEE 245 (421)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544
No 263
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=94.75 E-value=1.1 Score=53.47 Aligned_cols=78 Identities=17% Similarity=0.247 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-----chhhHHHHHHHHHHHHHHHH-HHHHHHhHhcCcccc
Q 002980 650 KQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGS-----ADGLLQVRADRIQSDLEELL-KALTERCKKHGIDVK 723 (861)
Q Consensus 650 kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~-----~n~~Lkera~~in~el~eL~-~~L~e~~~~~g~~~~ 723 (861)
+.+...+..+..++-+|.+.+.+..+|+..|.+|++... +-..+ ..++.|. ..+.+.|-.||++.-
T Consensus 474 rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~lE~sG~g~pv--------k~ve~~t~~~Ie~~e~~~gik~G 545 (652)
T COG2433 474 REIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLELSGKGTPV--------KVVEKLTLEAIEEAEEEYGIKEG 545 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcce--------ehhhhhhHHHHHhHHHhhccccC
Confidence 455566677777777777777777777777775542211 00001 1123332 345678899999999
Q ss_pred ccceeecCCCCC
Q 002980 724 SHAVIELPFGWQ 735 (861)
Q Consensus 724 ~~~~~e~p~gw~ 735 (861)
--.+||=|-|=.
T Consensus 546 Dvi~v~~~sG~g 557 (652)
T COG2433 546 DVILVEDPSGGG 557 (652)
T ss_pred cEEEEEcCCCcc
Confidence 999999998743
No 264
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=94.72 E-value=0.068 Score=44.49 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=38.4
Q ss_pred ccCHHHHHHHHHhCC--CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHH
Q 002980 23 RISGAEAVAFFQGSN--LPKQVLAQIWMHADHNHTSYLGRQEFYNALKL 69 (861)
Q Consensus 23 ~ISg~E~~~~f~~Sg--Lp~~~L~qIW~laD~d~DG~Ls~~EF~~Al~L 69 (861)
+++-.|++.+|+.-+ +++..+..+|+.+|.+++|.|+.+||..-++.
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 467889999998765 58888999999999999999999999877664
No 265
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=94.72 E-value=1.4 Score=43.52 Aligned_cols=119 Identities=13% Similarity=0.115 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 590 DEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFREL 669 (861)
Q Consensus 590 a~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~ 669 (861)
.....++...+.+.+..+.+++.|..|+.+..+.+.......- .-..+.....=++.....|..+...|..++..+...
T Consensus 19 e~a~~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~~g~-~~~~l~~~~~fi~~L~~~I~~q~~~v~~~~~~ve~~ 97 (147)
T PRK05689 19 EQAALQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGSAGM-TSSWWINYQQFLQQLEKAITQQRQQLTQWTQKVDNA 97 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667777789999999999999988887764321100 011111222223333355555556666666666666
Q ss_pred HHHHHHHHHHHHHHhccCc--chhhHHHHHHHHHHHHHHHHH
Q 002980 670 QERKMELHQAIVNMERGGS--ADGLLQVRADRIQSDLEELLK 709 (861)
Q Consensus 670 Q~EL~eLqqeIqkLe~~~~--~n~~Lkera~~in~el~eL~~ 709 (861)
+.++.+-..+...||..++ ......+..+.=|..+||+--
T Consensus 98 r~~~~~a~~~~k~lEkL~ek~~~~~~~~e~r~EQk~~DE~a~ 139 (147)
T PRK05689 98 RKYWQEKKQRLEALETLQERYQTEARLAENKREQKQMDEFAQ 139 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 6666666666655554444 444455555555666666543
No 266
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=94.72 E-value=0.021 Score=60.98 Aligned_cols=63 Identities=24% Similarity=0.471 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhhCCCCCCccCHHHHHHHHH--hcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHH
Q 002980 405 DIQKYSKVFMEVDTDRDGRITGEQARNLFM--SWRLPREVLKQVWDLSDQDSDSMLSLREFCFALYLM 470 (861)
Q Consensus 405 dk~~Y~~iF~~lD~d~dG~Isg~ea~~~f~--ksgLp~e~L~~IW~LaD~d~dG~LdkdEF~vAMhLI 470 (861)
.+..|.++ +|.+.||.+|..|+..+.. .+.+.-.....|+.+.|-+++.+|+++|.+---+|+
T Consensus 282 RkkEFeEl---IDsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~eell~r~~~~ 346 (362)
T KOG4251|consen 282 RKKEFEEL---IDSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLEELLERDWLL 346 (362)
T ss_pred HHHHHHHH---hhcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHHHHHHHHhhh
Confidence 33445444 4779999999999999875 567888899999999999999999999976655554
No 267
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.69 E-value=2.1 Score=47.73 Aligned_cols=81 Identities=19% Similarity=0.216 Sum_probs=47.6
Q ss_pred HhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCc-chhhHHHHHHHHHHHHHH
Q 002980 633 ADRREAETLGKKYEEKY-KQVAEIASKLTIEDAKFRELQERKMELHQAIVNME----RGGS-ADGLLQVRADRIQSDLEE 706 (861)
Q Consensus 633 ~~kreIesLr~k~ee~~-kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe----~~~~-~n~~Lkera~~in~el~e 706 (861)
++..+--.|...++.+. -.|..|..+|..++.+...++.+|.+|..+-..|| +-|. =.-.|..|++.+..+--.
T Consensus 117 qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~ 196 (310)
T PF09755_consen 117 QLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRR 196 (310)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444322 23455556666666666666666666666665333 3333 334788888888888888
Q ss_pred HHHHHHH
Q 002980 707 LLKALTE 713 (861)
Q Consensus 707 L~~~L~e 713 (861)
|+..|..
T Consensus 197 Lq~~l~~ 203 (310)
T PF09755_consen 197 LQEKLEQ 203 (310)
T ss_pred HHHHHcc
Confidence 8877754
No 268
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=94.64 E-value=0.55 Score=55.30 Aligned_cols=93 Identities=10% Similarity=0.136 Sum_probs=59.5
Q ss_pred hhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 582 STTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTI 661 (861)
Q Consensus 582 ~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~ 661 (861)
+.+|..+++..+.......++-+.|..++...+..|..+..+|+++..++..++.+++.-| .+.|+||.+
T Consensus 422 I~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr----------~NYE~QLs~ 491 (518)
T PF10212_consen 422 IEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTR----------RNYEEQLSM 491 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhHHHHHHH
Confidence 3333333333333333344455677777777777777777777777777777777777776 556667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 002980 662 EDAKFRELQERKMELHQAIVNME 684 (861)
Q Consensus 662 lEa~L~d~Q~EL~eLqqeIqkLe 684 (861)
+-+.|-.+..+|...+++|+.|+
T Consensus 492 MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 492 MSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777777777777777554
No 269
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=94.64 E-value=1.5 Score=51.07 Aligned_cols=102 Identities=17% Similarity=0.195 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 002980 605 FYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV--- 681 (861)
Q Consensus 605 ~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIq--- 681 (861)
.+.+..+.|..++......++ ....-+..+++|-++-...++.+.+.|...|++++.+|.+..+|+.+|.
T Consensus 292 k~s~~i~~l~ek~r~l~~D~n-------k~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~ 364 (622)
T COG5185 292 KISQKIKTLREKWRALKSDSN-------KYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQG 364 (622)
T ss_pred HHHHHHHHHHHHHHHHhhhHH-------HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcC
Confidence 334444444444444433333 2333344455555555566667777777777788888888888887776
Q ss_pred ----HHhccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 002980 682 ----NMERGGSADGLLQVRADRIQSDLEELLKALTE 713 (861)
Q Consensus 682 ----kLe~~~~~n~~Lkera~~in~el~eL~~~L~e 713 (861)
+.|.-.++-+.|-..++.|+.+.++|.+..-+
T Consensus 365 Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~ 400 (622)
T COG5185 365 ISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKS 400 (622)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 44445556678888899999999999887644
No 270
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.63 E-value=1.4 Score=47.57 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHH
Q 002980 605 FYRSKMQELVLYKSRCDNRLNEIT 628 (861)
Q Consensus 605 ~LrsQlQEL~~~Ksr~e~~L~ei~ 628 (861)
.|.+||++|+....+++.+.+.++
T Consensus 49 elesqL~q~etrnrdl~t~nqrl~ 72 (333)
T KOG1853|consen 49 ELESQLDQLETRNRDLETRNQRLT 72 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777776666666555443
No 271
>PRK12705 hypothetical protein; Provisional
Probab=94.61 E-value=1.3 Score=52.68 Aligned_cols=66 Identities=8% Similarity=0.106 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 611 QELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMEL 676 (861)
Q Consensus 611 QEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eL 676 (861)
+++..++.++++++++.+.+....+..+......++.+.+.++..+.+|...+..|...+.++.++
T Consensus 59 ~~~~~~~~~~e~e~~~~~~~~~~~e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~ 124 (508)
T PRK12705 59 ELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEEL 124 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666655555544444444444455555555555566655555555555555554
No 272
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=94.52 E-value=1.8 Score=47.53 Aligned_cols=109 Identities=13% Similarity=0.171 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002980 605 FYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (861)
Q Consensus 605 ~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe 684 (861)
..+..-++|-..=..++..|++|.+++..+--++..+...|-..+.+....=..|-..|+.|...+.....|..+|++|+
T Consensus 79 e~~~~A~~L~~WG~~edddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I~kLk 158 (271)
T PF13805_consen 79 ERKAAAKQLSEWGEQEDDDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNREESLQPSRDRRRKLQDEIAKLK 158 (271)
T ss_dssp HHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHH
Confidence 44455555666666678899999999998888888888888877766666666667777788888888888888888776
Q ss_pred ccCc---chhhHHHHHHHHHHHHHHHHHHHHH
Q 002980 685 RGGS---ADGLLQVRADRIQSDLEELLKALTE 713 (861)
Q Consensus 685 ~~~~---~n~~Lkera~~in~el~eL~~~L~e 713 (861)
...- +...|++++.+...+..-.+.+|.+
T Consensus 159 ~k~P~s~kl~~LeqELvraEae~lvaEAqL~n 190 (271)
T PF13805_consen 159 YKDPQSPKLVVLEQELVRAEAENLVAEAQLSN 190 (271)
T ss_dssp HH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5332 5667788877777766666666644
No 273
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=1 Score=43.77 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHH
Q 002980 604 EFYRSKMQELVLYKSRCDNRLNEIT 628 (861)
Q Consensus 604 e~LrsQlQEL~~~Ksr~e~~L~ei~ 628 (861)
..|+.+++.+..+|...+..|+|+.
T Consensus 16 QqLq~ql~~~~~qk~~le~qL~E~~ 40 (119)
T COG1382 16 QQLQQQLQKVILQKQQLEAQLKEIE 40 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666654
No 274
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.50 E-value=2.3 Score=51.66 Aligned_cols=52 Identities=19% Similarity=0.301 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 608 SKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKL 659 (861)
Q Consensus 608 sQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL 659 (861)
.++.++...+.+.+..+.+++.++--.+.++..+-..+..+.|.++.+..+|
T Consensus 151 ~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql 202 (716)
T KOG4593|consen 151 DKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQL 202 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444334444433333333333333333333
No 275
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=94.49 E-value=0.13 Score=51.77 Aligned_cols=62 Identities=11% Similarity=0.239 Sum_probs=56.5
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHhC--CCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHH
Q 002980 7 DQFESFFRRADLDGDGRISGAEAVAFFQGS--NLPKQVLAQIWMHADHNHTSYLGRQEFYNALK 68 (861)
Q Consensus 7 ~~y~~iF~~~D~DgDG~ISg~E~~~~f~~S--gLp~~~L~qIW~laD~d~DG~Ls~~EF~~Al~ 68 (861)
......|..+|.+++|.|..+.++.+|..- .++++++.++|+.+=.|..|.+++.+|+-.|.
T Consensus 101 ~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 101 EVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 467889999999999999999999999864 58999999999999999999999999988754
No 276
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=94.45 E-value=0.11 Score=51.65 Aligned_cols=60 Identities=17% Similarity=0.387 Sum_probs=49.8
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCccCHHHHHHHH
Q 002980 407 QKYSKVFMEVDTDRDGRITGEQARNLFMSW--RLPREVLKQVWDLSDQDSDSMLSLREFCFAL 467 (861)
Q Consensus 407 ~~Y~~iF~~lD~d~dG~Isg~ea~~~f~ks--gLp~e~L~~IW~LaD~d~dG~LdkdEF~vAM 467 (861)
..|-+-++.+|++++|+|.+.|+|.+|... +|..+++..+..=.- |.+|+|+++.|+-.+
T Consensus 88 edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 88 EDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYEAFVKHI 149 (152)
T ss_pred HHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHHHHHHHH
Confidence 456666777799999999999999999987 699999999876654 778999999998643
No 277
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=94.44 E-value=0.88 Score=56.22 Aligned_cols=49 Identities=16% Similarity=0.134 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 002980 665 KFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTE 713 (861)
Q Consensus 665 ~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L~e 713 (861)
.++.++.++.+|++++.++-+.+.+...|+.+.+..+.-.+.|.....|
T Consensus 347 ~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e 395 (726)
T PRK09841 347 KRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQE 395 (726)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333334445555555555555555554444
No 278
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=94.43 E-value=1.8 Score=42.69 Aligned_cols=117 Identities=10% Similarity=0.056 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 592 REKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQE 671 (861)
Q Consensus 592 Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~ 671 (861)
...++.+.+.+++....++++|..|+.+..+.+.+.....- .-..+.....=++.....|..+...|..++..+...+.
T Consensus 21 a~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~g~-~~~~l~~~~~fl~~L~~~i~~q~~~v~~~~~~ve~~r~ 99 (146)
T PRK07720 21 ALGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEEKLQSGL-SIQEIRHYQQFVTNLERTIDHYQLLVMQAREQMNRKQQ 99 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666788888999999999988888865321111 01111222222233345666666666777777777777
Q ss_pred HHHHHHHHHHHHhccCc--chhhHHHHHHHHHHHHHHHHH
Q 002980 672 RKMELHQAIVNMERGGS--ADGLLQVRADRIQSDLEELLK 709 (861)
Q Consensus 672 EL~eLqqeIqkLe~~~~--~n~~Lkera~~in~el~eL~~ 709 (861)
++.+-..+...||..++ .....++..+.=|..+||+-.
T Consensus 100 ~~~ea~~~~k~~ekLker~~~~~~~~e~r~EQk~~DE~a~ 139 (146)
T PRK07720 100 DLTEKNIEVKKYEKMKEKKQEMFALEEKAAEMKEMDEISI 139 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777666666655554 455566666666777777654
No 279
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=94.43 E-value=1.6 Score=57.71 Aligned_cols=60 Identities=17% Similarity=0.059 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcch-hhHHHHHHHHHHHHHHHHHHHHHHhHhcCccc
Q 002980 663 DAKFRELQERKMELHQAIVNMERGGSAD-GLLQVRADRIQSDLEELLKALTERCKKHGIDV 722 (861)
Q Consensus 663 Ea~L~d~Q~EL~eLqqeIqkLe~~~~~n-~~Lkera~~in~el~eL~~~L~e~~~~~g~~~ 722 (861)
+..+.+.+.++.++++++++++...... ..++..+..|..+|+++...|.+.-+.+|--.
T Consensus 888 e~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~ 948 (1353)
T TIGR02680 888 ESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLA 948 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333222211 12333356667777777777777666666433
No 280
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.42 E-value=1.9 Score=51.04 Aligned_cols=28 Identities=11% Similarity=0.262 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002980 657 SKLTIEDAKFRELQERKMELHQAIVNME 684 (861)
Q Consensus 657 sQL~~lEa~L~d~Q~EL~eLqqeIqkLe 684 (861)
.+|..+|++|++++.+|...+.|...|+
T Consensus 107 ~kI~eleneLKq~r~el~~~q~E~erl~ 134 (772)
T KOG0999|consen 107 QKILELENELKQLRQELTNVQEENERLE 134 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555443
No 281
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.37 E-value=3.3 Score=46.23 Aligned_cols=8 Identities=50% Similarity=0.800 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 002980 635 RREAETLG 642 (861)
Q Consensus 635 kreIesLr 642 (861)
+.+.+.|.
T Consensus 90 ~keKe~L~ 97 (310)
T PF09755_consen 90 KKEKETLA 97 (310)
T ss_pred HHHHHHHH
Confidence 33333333
No 282
>PRK12704 phosphodiesterase; Provisional
Probab=94.35 E-value=1.8 Score=51.68 Aligned_cols=13 Identities=23% Similarity=0.294 Sum_probs=7.3
Q ss_pred cccceeecCCCCC
Q 002980 723 KSHAVIELPFGWQ 735 (861)
Q Consensus 723 ~~~~~~e~p~gw~ 735 (861)
.....|.||-.=+
T Consensus 209 ~~~~~v~lp~d~m 221 (520)
T PRK12704 209 TTVSVVNLPNDEM 221 (520)
T ss_pred hceeeeecCCchh
Confidence 3455677776433
No 283
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=94.33 E-value=0.092 Score=59.87 Aligned_cols=63 Identities=21% Similarity=0.398 Sum_probs=57.4
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHH
Q 002980 407 QKYSKVFMEVDTDRDGRITGEQARNLFMSW--RLPREVLKQVWDLSDQDSDSMLSLREFCFALYL 469 (861)
Q Consensus 407 ~~Y~~iF~~lD~d~dG~Isg~ea~~~f~ks--gLp~e~L~~IW~LaD~d~dG~LdkdEF~vAMhL 469 (861)
.+..++|.++|.++||.|...|+.+.|.+. +|..+.+++|..-.|.|+++.|+++||--.|-|
T Consensus 82 ~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll 146 (463)
T KOG0036|consen 82 LELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLL 146 (463)
T ss_pred HHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhc
Confidence 345678999999999999999999999987 589999999999999999999999999877665
No 284
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=94.32 E-value=0.8 Score=45.57 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhH
Q 002980 692 LLQVRADRIQSDLEELLKALTERCK 716 (861)
Q Consensus 692 ~Lkera~~in~el~eL~~~L~e~~~ 716 (861)
.++.++..++...+.|...+.+|++
T Consensus 183 ~~~~~l~~l~~~~~~l~~~~~~~~~ 207 (213)
T cd00176 183 EIEEKLEELNERWEELLELAEERQK 207 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443
No 285
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=94.32 E-value=3.3 Score=44.95 Aligned_cols=73 Identities=18% Similarity=0.281 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----chhhHHHHHHHHHHHHHHHHHHHHHHhHhcCcccc
Q 002980 651 QVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGS----ADGLLQVRADRIQSDLEELLKALTERCKKHGIDVK 723 (861)
Q Consensus 651 qv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~----~n~~Lkera~~in~el~eL~~~L~e~~~~~g~~~~ 723 (861)
.|.++|-.|++...+-..++..-.+|+.=+++|.+++. -.-.||+++.....+|..|++-+.-..+..|=+.-
T Consensus 237 ria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~d~~~ 313 (330)
T KOG2991|consen 237 RIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVGDKKD 313 (330)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 35677778888766666666666666666666667665 44579999999999999999988877777765543
No 286
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.31 E-value=1.2 Score=53.62 Aligned_cols=144 Identities=19% Similarity=0.218 Sum_probs=77.6
Q ss_pred hHHhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002980 583 TTAGKKVDEREKVILDSREKIE-------FYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEI 655 (861)
Q Consensus 583 ~elekela~Le~qi~~sree~e-------~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~el 655 (861)
..++++|..++..+......++ .+...++++...-..++.+..++.+.+..+..+-...|.+++.....+.++
T Consensus 347 ~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~i 426 (560)
T PF06160_consen 347 RELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREI 426 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544433322 333333333333333333333333444444444444444444444555555
Q ss_pred HHHH---------HHHHHHHHHHHHHHHHHHHHHH----HHhccCcchhhHHHHHHHHHHHHHHHHH--HHHHHhHhcCc
Q 002980 656 ASKL---------TIEDAKFRELQERKMELHQAIV----NMERGGSADGLLQVRADRIQSDLEELLK--ALTERCKKHGI 720 (861)
Q Consensus 656 EsQL---------~~lEa~L~d~Q~EL~eLqqeIq----kLe~~~~~n~~Lkera~~in~el~eL~~--~L~e~~~~~g~ 720 (861)
.-.| ......|.....++..|..++. .|+.-.+.....+.-+..+..++.+|.. .|.|++=+||=
T Consensus 427 kR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L~E~~iQYaN 506 (560)
T PF06160_consen 427 KRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELIDNATLAEQLIQYAN 506 (560)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5444 4446677888888888888887 4434344455555555555555555554 57899999999
Q ss_pred cccccc
Q 002980 721 DVKSHA 726 (861)
Q Consensus 721 ~~~~~~ 726 (861)
|.+.+-
T Consensus 507 RYR~~~ 512 (560)
T PF06160_consen 507 RYRSDN 512 (560)
T ss_pred cccCCC
Confidence 987653
No 287
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=94.30 E-value=1.1 Score=50.90 Aligned_cols=7 Identities=29% Similarity=0.311 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 002980 636 REAETLG 642 (861)
Q Consensus 636 reIesLr 642 (861)
.+|..|+
T Consensus 324 nEi~nLK 330 (455)
T KOG3850|consen 324 NEIANLK 330 (455)
T ss_pred HHHHHHH
Confidence 3444444
No 288
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.28 E-value=1.5 Score=53.50 Aligned_cols=41 Identities=12% Similarity=0.095 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 636 REAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMEL 676 (861)
Q Consensus 636 reIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eL 676 (861)
.+++.+.+++.+...++..++.++..++..+..++.++.++
T Consensus 428 e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 428 EELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333334433333333333333333
No 289
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=94.24 E-value=2.1 Score=54.21 Aligned_cols=48 Identities=15% Similarity=0.211 Sum_probs=27.8
Q ss_pred HHHHHHHHhhCCCCCC---ccCH-----HHHHHHHHhcCCCHHHHHHHHHhhCC---CCCCc
Q 002980 407 QKYSKVFMEVDTDRDG---RITG-----EQARNLFMSWRLPREVLKQVWDLSDQ---DSDSM 457 (861)
Q Consensus 407 ~~Y~~iF~~lD~d~dG---~Isg-----~ea~~~f~ksgLp~e~L~~IW~LaD~---d~dG~ 457 (861)
....+||+.++.++.- +||+ +|+.++|....... +.+|..-|. |+.|.
T Consensus 166 Ral~~IFd~Le~~~~EYsvKVSfLELYNEEl~DLLa~~~~~~---~~~~~k~~~~~~~~kgg 224 (1041)
T KOG0243|consen 166 RALRQIFDTLEAQGAEYSVKVSFLELYNEELTDLLASEDTSD---KKLRIKDDSTIVDGKGG 224 (1041)
T ss_pred HHHHHHHHHHHhcCCeEEEEEEehhhhhHHHHHhcCCccccc---cccccccCCcccCCcCc
Confidence 3567899999755422 3444 56666665332222 666766676 45443
No 290
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=94.23 E-value=1.7 Score=52.03 Aligned_cols=16 Identities=19% Similarity=0.328 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 002980 666 FRELQERKMELHQAIV 681 (861)
Q Consensus 666 L~d~Q~EL~eLqqeIq 681 (861)
|.+.|.++..|+.++.
T Consensus 244 Le~aq~ri~~lE~e~e 259 (629)
T KOG0963|consen 244 LEDAQQRIVFLEREVE 259 (629)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 291
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=94.23 E-value=1.5 Score=50.50 Aligned_cols=17 Identities=0% Similarity=0.108 Sum_probs=8.8
Q ss_pred CCCHHHHHHHHHhhCCC
Q 002980 437 RLPREVLKQVWDLSDQD 453 (861)
Q Consensus 437 gLp~e~L~~IW~LaD~d 453 (861)
+-++..+.+|-..++-.
T Consensus 40 ~aDk~Q~~rIkq~Fekk 56 (395)
T PF10267_consen 40 NADKQQAARIKQVFEKK 56 (395)
T ss_pred hccHHHHHHHHHHHHHH
Confidence 45555555555555443
No 292
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=94.22 E-value=1.1 Score=42.43 Aligned_cols=40 Identities=10% Similarity=0.195 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 002980 589 VDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEIT 628 (861)
Q Consensus 589 la~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~ 628 (861)
+.++-++++.++.++..+..+++.|+..+.++..-++++.
T Consensus 5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~ 44 (110)
T TIGR02338 5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELE 44 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666777777777888888777777766666654
No 293
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=2.3 Score=52.04 Aligned_cols=98 Identities=17% Similarity=0.209 Sum_probs=39.4
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 584 TAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIED 663 (861)
Q Consensus 584 elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lE 663 (861)
.|..+...|+.++..+....+.+......|+.+-..|......+..+.......++.++++..+..+-++.+..++...+
T Consensus 500 ~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~ 579 (698)
T KOG0978|consen 500 LLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSE 579 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333333333333333333333333333222222222333333333333333344444444444445
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002980 664 AKFRELQERKMELHQAIV 681 (861)
Q Consensus 664 a~L~d~Q~EL~eLqqeIq 681 (861)
+.|.+++....++..+|.
T Consensus 580 ~~le~i~~~~~e~~~ele 597 (698)
T KOG0978|consen 580 AKLEQIQEQYAELELELE 597 (698)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555555544
No 294
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=94.12 E-value=0.31 Score=57.69 Aligned_cols=100 Identities=11% Similarity=0.161 Sum_probs=52.0
Q ss_pred hhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLT 660 (861)
Q Consensus 581 E~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~ 660 (861)
++.+++++|+.++.++.+.+++++.++.++.-|+.........+.+ .+......+..+++-.+-..+++.++..++.
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKD---SAKRNEPDLKEWFQAFDFNGSEIERLLTEDR 148 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc---ccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777777777777776665554322211110 0000112333444333333344455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002980 661 IEDAKFRELQERKMELHQAIVNM 683 (861)
Q Consensus 661 ~lEa~L~d~Q~EL~eLqqeIqkL 683 (861)
.++..+++++.++.+|+.++.+|
T Consensus 149 ~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 149 EAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555555555555555555544
No 295
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=94.07 E-value=2.1 Score=56.60 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=13.3
Q ss_pred CccCHHHHHHHHHHHHHHh
Q 002980 456 SMLSLREFCFALYLMERYR 474 (861)
Q Consensus 456 G~LdkdEF~vAMhLI~~~~ 474 (861)
|.++.+.|.-.++++.+.+
T Consensus 175 G~~~~~ry~~l~~~l~~lr 193 (1353)
T TIGR02680 175 GFLGEERYAALLDLLIQLR 193 (1353)
T ss_pred CCCChHHHHHHHHHHHHHc
Confidence 6666678888777776543
No 296
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=94.05 E-value=1.1 Score=42.17 Aligned_cols=36 Identities=11% Similarity=0.171 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 002980 592 REKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEI 627 (861)
Q Consensus 592 Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei 627 (861)
+-.++.++++++..+..+.+.|+....++..-++++
T Consensus 4 ~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL 39 (105)
T cd00632 4 QLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEEL 39 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334454455555555555555555555554444444
No 297
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=94.02 E-value=5.1 Score=43.06 Aligned_cols=103 Identities=15% Similarity=0.180 Sum_probs=58.9
Q ss_pred chhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------hHHHHHHHHHhHHHHHHHHHHHH
Q 002980 579 LQDSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNR------------LNEITERALADRREAETLGKKYE 646 (861)
Q Consensus 579 ~qE~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~------------L~ei~e~~s~~kreIesLr~k~e 646 (861)
.|.+.+.+.++.++...+.+.......+..++.++..+..+.+.+ .++.-+++..++..+..+++.|.
T Consensus 30 ~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~ 109 (225)
T COG1842 30 EQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQ 109 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777776666654443333333443333333322222 12333555556666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 647 EKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (861)
Q Consensus 647 e~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIq 681 (861)
+....++.++.+|..+|..+.+++.+++.|.....
T Consensus 110 ~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~ 144 (225)
T COG1842 110 QAEEQVEKLKKQLAALEQKIAELRAKKEALKARKA 144 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667777777777777777777766666554
No 298
>PRK10698 phage shock protein PspA; Provisional
Probab=94.02 E-value=5.3 Score=42.69 Aligned_cols=44 Identities=16% Similarity=0.137 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 635 RREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQ 678 (861)
Q Consensus 635 kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqq 678 (861)
...+..|+.+|+.....+..++.+|..++..|.+.+.+...|..
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~a 141 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALML 141 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555554443
No 299
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=93.95 E-value=0.58 Score=57.68 Aligned_cols=85 Identities=20% Similarity=0.280 Sum_probs=49.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHH
Q 002980 629 ERALADRREAETLGKKYEEKYKQVAEIASKL----------------------------TIEDAKFRELQERKMELHQAI 680 (861)
Q Consensus 629 e~~s~~kreIesLr~k~ee~~kqv~elEsQL----------------------------~~lEa~L~d~Q~EL~eLqqeI 680 (861)
++...++.++..|+.+++...++++.++.+| .+...+|..++.|...|.+.+
T Consensus 503 e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l 582 (722)
T PF05557_consen 503 EELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARL 582 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555556666666555 223578888888888888888
Q ss_pred HHHhccCcc----------------hhhHHHHHHHHHHHHHHHHHHHHH
Q 002980 681 VNMERGGSA----------------DGLLQVRADRIQSDLEELLKALTE 713 (861)
Q Consensus 681 qkLe~~~~~----------------n~~Lkera~~in~el~eL~~~L~e 713 (861)
..|+.+... ...|+.++...+.....|++....
T Consensus 583 ~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ 631 (722)
T PF05557_consen 583 RSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKA 631 (722)
T ss_dssp HHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777765442 234455555555555555554433
No 300
>PRK11519 tyrosine kinase; Provisional
Probab=93.91 E-value=0.59 Score=57.64 Aligned_cols=47 Identities=19% Similarity=0.192 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 002980 667 RELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTE 713 (861)
Q Consensus 667 ~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L~e 713 (861)
+.++.++.+|+.++..|-+.+.+...|+.+.+..+.-.+.|...+.|
T Consensus 349 ~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e 395 (719)
T PRK11519 349 KALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQE 395 (719)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444433333334444555555444444555554444
No 301
>PF13514 AAA_27: AAA domain
Probab=93.88 E-value=2.2 Score=55.27 Aligned_cols=70 Identities=19% Similarity=0.280 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHhccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 002980 650 KQVAEIASKLTIEDAKFRELQERKMELHQAIV----------------NMERGGSADGLLQVRADRIQSDLEELLKALTE 713 (861)
Q Consensus 650 kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIq----------------kLe~~~~~n~~Lkera~~in~el~eL~~~L~e 713 (861)
.++..++.++..++..+..++.++..|++++. .|.+....-...+..+..++.++.+++..+.+
T Consensus 242 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~~~~~~~~~~~dl~~~~~e~~~~~~~~~~ 321 (1111)
T PF13514_consen 242 ERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEEQRGEYRKARQDLPRLEAELAELEAELRA 321 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555444 44444445556667777788888888888888
Q ss_pred HhHhcC
Q 002980 714 RCKKHG 719 (861)
Q Consensus 714 ~~~~~g 719 (861)
.+..+|
T Consensus 322 ~~~~lg 327 (1111)
T PF13514_consen 322 LLAQLG 327 (1111)
T ss_pred HHHhcC
Confidence 888888
No 302
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=93.84 E-value=3.1 Score=46.16 Aligned_cols=41 Identities=20% Similarity=0.086 Sum_probs=32.4
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHhHhcCccccccc
Q 002980 686 GGSADGLLQVRADRIQSDLEELLKALTERCKKHGIDVKSHA 726 (861)
Q Consensus 686 ~~~~n~~Lkera~~in~el~eL~~~L~e~~~~~g~~~~~~~ 726 (861)
-...-+.|++|+.+++++--=|..+|.+-+++...+.|-.+
T Consensus 212 ~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~Vi 252 (305)
T PF14915_consen 212 YIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVI 252 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33466789999999999999999999998887665555433
No 303
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=93.82 E-value=3.3 Score=47.54 Aligned_cols=60 Identities=15% Similarity=0.204 Sum_probs=47.4
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 600 REKIE-FYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKL 659 (861)
Q Consensus 600 ree~e-~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL 659 (861)
....+ .++....+++.-|.+.+..|.++..++...+++|..|++-+.++..-++-.+..|
T Consensus 242 ~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL 302 (384)
T PF03148_consen 242 ADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRL 302 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33344 7888888888888889888888888888888888888888877777666666555
No 304
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=93.79 E-value=4.2 Score=44.51 Aligned_cols=66 Identities=14% Similarity=0.197 Sum_probs=41.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002980 586 GKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAE 654 (861)
Q Consensus 586 ekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~e 654 (861)
+.++..|+.|+..+..++...+.++.-|..||- .+=-++ .-+|+.+.++|+.|+..-+++..++.+
T Consensus 80 e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD-~EYPvK--~vqIa~L~rqlq~lk~~qqdEldel~e 145 (258)
T PF15397_consen 80 ESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKD-HEYPVK--AVQIANLVRQLQQLKDSQQDELDELNE 145 (258)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666677776677777777777777777776 222222 235777777787777555555544443
No 305
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=93.76 E-value=1.5 Score=51.26 Aligned_cols=25 Identities=12% Similarity=0.076 Sum_probs=17.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Q 002980 689 ADGLLQVRADRIQSDLEELLKALTE 713 (861)
Q Consensus 689 ~n~~Lkera~~in~el~eL~~~L~e 713 (861)
+...++.++..++..++.++..|..
T Consensus 292 ~l~~~~~~l~~~~~~l~~a~~~l~~ 316 (457)
T TIGR01000 292 EITDLNQKLLELESKIKSLKEDSQK 316 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5556677777777777777777744
No 306
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=93.76 E-value=0.6 Score=51.99 Aligned_cols=36 Identities=25% Similarity=0.382 Sum_probs=26.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH---hHhcCccccc
Q 002980 689 ADGLLQVRADRIQSDLEELLKALTER---CKKHGIDVKS 724 (861)
Q Consensus 689 ~n~~Lkera~~in~el~eL~~~L~e~---~~~~g~~~~~ 724 (861)
+.+.+|+-++.++.++++|+.+|.+| .++|||-.-+
T Consensus 141 elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~ 179 (302)
T PF09738_consen 141 ELERQKRAHDSLREELDELREQLKQRDELIEKHGLVLVP 179 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCC
Confidence 34566777788888888888888775 4678875544
No 307
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=93.72 E-value=3.4 Score=45.56 Aligned_cols=21 Identities=10% Similarity=0.101 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002980 651 QVAEIASKLTIEDAKFRELQE 671 (861)
Q Consensus 651 qv~elEsQL~~lEa~L~d~Q~ 671 (861)
++++.+.++..+++.|+..+.
T Consensus 147 ~~~~a~~~~~~a~~~l~~~~~ 167 (334)
T TIGR00998 147 ELDHARKALLSAKAALNAAIQ 167 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444
No 308
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.72 E-value=0.09 Score=50.62 Aligned_cols=58 Identities=22% Similarity=0.303 Sum_probs=44.6
Q ss_pred HHHHHhhCCCCCCccCHHHHHHHHHh------CC-----C-CHHHHHHHH----HHhCCCCCCCcCHHHHHHHH
Q 002980 10 ESFFRRADLDGDGRISGAEAVAFFQG------SN-----L-PKQVLAQIW----MHADHNHTSYLGRQEFYNAL 67 (861)
Q Consensus 10 ~~iF~~~D~DgDG~ISg~E~~~~f~~------Sg-----L-p~~~L~qIW----~laD~d~DG~Ls~~EF~~Al 67 (861)
-.+|++.|.|++|+|+|-|+...+.- +| | ++..|..|. +--|-|+||+|++.||..+.
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~q 143 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKRQ 143 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhhc
Confidence 36899999999999999998777642 33 2 445565554 45678999999999998863
No 309
>PRK12704 phosphodiesterase; Provisional
Probab=93.70 E-value=2.3 Score=50.87 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002980 693 LQVRADRIQSDLEELLKALTE 713 (861)
Q Consensus 693 Lkera~~in~el~eL~~~L~e 713 (861)
|++=-..+..+...+.+...+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~ 180 (520)
T PRK12704 160 LEKVEEEARHEAAVLIKEIEE 180 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444433
No 310
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.63 E-value=2.5 Score=50.75 Aligned_cols=45 Identities=16% Similarity=0.276 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 002980 669 LQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTE 713 (861)
Q Consensus 669 ~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L~e 713 (861)
+-....+++++++.|+..-...+.|+.++..+..++.+.=..|..
T Consensus 323 l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~ 367 (557)
T COG0497 323 LLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSA 367 (557)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555556666666666666555555544
No 311
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=93.62 E-value=0.11 Score=66.17 Aligned_cols=79 Identities=16% Similarity=0.343 Sum_probs=62.5
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHhC---------CCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhcCC
Q 002980 7 DQFESFFRRADLDGDGRISGAEAVAFFQGS---------NLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSKR 77 (861)
Q Consensus 7 ~~y~~iF~~~D~DgDG~ISg~E~~~~f~~S---------gLp~~~L~qIW~laD~d~DG~Ls~~EF~~Al~Li~~aQ~G~ 77 (861)
..|.-+|+.||.+.+|+++-.+++.+|+.- |-|+..+.+|..++|+++|||+++.+|+..|- ..- ..+
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi--~~E-TeN 2329 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMI--SKE-TEN 2329 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHH--hcc-ccc
Confidence 468889999999999999999999999863 33566899999999999999999999988642 221 224
Q ss_pred CCCHHHHhhhh
Q 002980 78 ELTPDIVKAAL 88 (861)
Q Consensus 78 ~lspdll~~~l 88 (861)
-++.+.+.++|
T Consensus 2330 I~s~~eIE~Af 2340 (2399)
T KOG0040|consen 2330 ILSSEEIEDAF 2340 (2399)
T ss_pred ccchHHHHHHH
Confidence 45556666653
No 312
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=93.60 E-value=6.3 Score=40.28 Aligned_cols=111 Identities=17% Similarity=0.299 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAET-LGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (861)
Q Consensus 603 ~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIes-Lr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIq 681 (861)
++.++.+..++...--+++.+-...+.+.....+++.. -..++-+-|.....++-+|.+....-..++.+-.+|+..|.
T Consensus 36 L~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~ 115 (159)
T PF05384_consen 36 LEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLR 115 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333344344455532 12233344467778888888887777777777778887777
Q ss_pred HHhccCcchhhHHHHH----HHHHHHHHHHHHHHHH
Q 002980 682 NMERGGSADGLLQVRA----DRIQSDLEELLKALTE 713 (861)
Q Consensus 682 kLe~~~~~n~~Lkera----~~in~el~eL~~~L~e 713 (861)
.|+.-+.+-+.|=-++ +=+..+|.++-..|.+
T Consensus 116 ~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~ 151 (159)
T PF05384_consen 116 NLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIED 151 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7766665433333322 2234444444444443
No 313
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=93.59 E-value=0.044 Score=61.03 Aligned_cols=122 Identities=8% Similarity=0.147 Sum_probs=15.2
Q ss_pred hhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 582 STTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTI 661 (861)
Q Consensus 582 ~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~ 661 (861)
...+..+|..||.-+..+++.+..+..++.+|.. +|+++...+.+.+.+|..|..++......|..++..|..
T Consensus 30 Ls~I~eRLsaLEssv~sL~~SVs~lss~iSdLss-------~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~ 102 (326)
T PF04582_consen 30 LSPIRERLSALESSVASLSDSVSSLSSTISDLSS-------DLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSS 102 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence 3334444445555554444444444444444443 333333333333344444443333333444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 002980 662 EDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTE 713 (861)
Q Consensus 662 lEa~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L~e 713 (861)
+-..+.+.+..+..|+..+..|+. +...||-.+..+...|..|+..++.
T Consensus 103 lS~~ls~h~ssIS~Lqs~v~~lsT---dvsNLksdVSt~aL~ItdLe~RV~~ 151 (326)
T PF04582_consen 103 LSSTLSDHSSSISDLQSSVSALST---DVSNLKSDVSTQALNITDLESRVKA 151 (326)
T ss_dssp ---------------HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHhhhhhhh---hhhhhhhhhhhhcchHhhHHHHHHH
Confidence 433333344444444444332211 2234455555555555555555544
No 314
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=93.58 E-value=3.7 Score=49.33 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002980 696 RADRIQSDLEELLKALTE 713 (861)
Q Consensus 696 ra~~in~el~eL~~~L~e 713 (861)
++..++..|..|.+.+..
T Consensus 379 ~l~~~~~~~~~le~~~~~ 396 (582)
T PF09731_consen 379 KLAELNSRLKALEEALDA 396 (582)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 315
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=93.56 E-value=4.1 Score=49.47 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhH
Q 002980 692 LLQVRADRIQSDLEELLKALTERCK 716 (861)
Q Consensus 692 ~Lkera~~in~el~eL~~~L~e~~~ 716 (861)
.+.-+++.++.+++.++++..|.-.
T Consensus 633 ~~eikVn~L~~E~e~~kk~~eE~~~ 657 (786)
T PF05483_consen 633 VYEIKVNKLQEELENLKKKHEEETD 657 (786)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444555566666666666655333
No 316
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.54 E-value=1.4 Score=56.13 Aligned_cols=18 Identities=11% Similarity=0.392 Sum_probs=9.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHH
Q 002980 393 NSQVPWPKMKPSDIQKYSKVF 413 (861)
Q Consensus 393 ~~~~~Wp~ISpedk~~Y~~iF 413 (861)
...+||=. -=+--|+-||
T Consensus 259 G~ecDwWS---lGV~~YEMly 276 (1317)
T KOG0612|consen 259 GRECDWWS---LGVFMYEMLY 276 (1317)
T ss_pred CCccchhh---hHHHHHHHHc
Confidence 34677722 2244566665
No 317
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=93.51 E-value=2.4 Score=45.86 Aligned_cols=50 Identities=22% Similarity=0.205 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 002980 662 EDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTER 714 (861)
Q Consensus 662 lEa~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L~e~ 714 (861)
++..+..++.++..|..+.. ..-.+...|+.++...+..+.+-+..|.+.
T Consensus 80 Le~e~~e~~~~i~~l~ee~~---~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~ 129 (246)
T PF00769_consen 80 LEQELREAEAEIARLEEESE---RKEEEAEELQEELEEAREDEEEAKEELLEV 129 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444 222355577777777877777777777653
No 318
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=93.47 E-value=0.97 Score=44.39 Aligned_cols=15 Identities=7% Similarity=0.306 Sum_probs=6.3
Q ss_pred hhHHhhhHHHHHHHH
Q 002980 582 STTAGKKVDEREKVI 596 (861)
Q Consensus 582 ~~elekela~Le~qi 596 (861)
.+.+-+.|+++...+
T Consensus 45 ~~~v~kql~~vs~~l 59 (126)
T PF07889_consen 45 VASVSKQLEQVSESL 59 (126)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444444
No 319
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=93.46 E-value=2 Score=54.12 Aligned_cols=71 Identities=18% Similarity=0.252 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-cchhhHHHHHHHHHHHHHHHHHHHHHHhHhcCccc
Q 002980 650 KQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGG-SADGLLQVRADRIQSDLEELLKALTERCKKHGIDV 722 (861)
Q Consensus 650 kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~-~~n~~Lkera~~in~el~eL~~~L~e~~~~~g~~~ 722 (861)
.+|+.||.||..+...|-+.= +.+.-.+|..||+.+ +.+..+|..+..++..+++++-.-+||-|+||-.-
T Consensus 1160 SDIEkLE~qLq~~~~kL~dAy--l~eitKqIsaLe~e~PKnltdvK~missf~d~laeiE~LrnErIKkHGaSk 1231 (1439)
T PF12252_consen 1160 SDIEKLEKQLQVIHTKLYDAY--LVEITKQISALEKEKPKNLTDVKSMISSFNDRLAEIEFLRNERIKKHGASK 1231 (1439)
T ss_pred HHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHHHhhCCCchhhHHHHHHHHHhhhhHHHHHHHHHhhccCCCC
Confidence 466777777766655544432 234445666776633 36669999999999999999998899999999643
No 320
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=93.45 E-value=10 Score=38.95 Aligned_cols=85 Identities=18% Similarity=0.212 Sum_probs=43.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHH
Q 002980 630 RALADRREAETLGKKYEEKYKQ-VAEI-ASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEEL 707 (861)
Q Consensus 630 ~~s~~kreIesLr~k~ee~~kq-v~el-EsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL 707 (861)
.+.++++++..+.+..++.+.+ ++.+ ......+...+++.+.++++|...|.+|- ....+..=+-+.+++..++|.
T Consensus 49 ~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l~d~inE~t~k~~El~~~i~el~--~~~~Ks~~~~l~q~~~~~eEt 126 (165)
T PF09602_consen 49 QVEELEKELKQFKREFSDLYEEYVKQLRKATGNSLNDSINEWTDKLNELSAKIQELL--LSPSKSSFSLLSQISKQYEET 126 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cchHHHHHHHHHHHHhhHHHH
Confidence 3333444444444333333333 2222 13445556666666666666666666442 223334444556666677777
Q ss_pred HHHHHHHhH
Q 002980 708 LKALTERCK 716 (861)
Q Consensus 708 ~~~L~e~~~ 716 (861)
.++|-+..+
T Consensus 127 v~~~ieqqk 135 (165)
T PF09602_consen 127 VKQLIEQQK 135 (165)
T ss_pred HHHHHHHHH
Confidence 766655433
No 321
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=93.42 E-value=1.8 Score=51.54 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 605 FYRSKMQELVLYKSRCDNRLNEITERALADRR--------------EAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQ 670 (861)
Q Consensus 605 ~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kr--------------eIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q 670 (861)
.++..-++|..||.++..-|......++.++. +++.|+.+.+....++..++.||..++.++++++
T Consensus 229 ~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e 308 (511)
T PF09787_consen 229 EGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLE 308 (511)
T ss_pred HhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667888886665555544444444444 1455666666666666666666655555555554
Q ss_pred HHH
Q 002980 671 ERK 673 (861)
Q Consensus 671 ~EL 673 (861)
.++
T Consensus 309 ~~~ 311 (511)
T PF09787_consen 309 AQL 311 (511)
T ss_pred HHH
Confidence 443
No 322
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=93.41 E-value=0.59 Score=52.55 Aligned_cols=57 Identities=16% Similarity=0.298 Sum_probs=42.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHH
Q 002980 586 GKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLG 642 (861)
Q Consensus 586 ekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr 642 (861)
++|.++|+.+.+++++.-..|..+++|+..-...|-..++.-+.+..+++..++.++
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~ 59 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCK 59 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466778888888888888899999999999999898888755544444444444443
No 323
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=93.32 E-value=2.7 Score=47.18 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002980 664 AKFRELQERKMELHQAIV 681 (861)
Q Consensus 664 a~L~d~Q~EL~eLqqeIq 681 (861)
+++..++.+.++|..||.
T Consensus 201 ~yI~~LEsKVqDLm~Eir 218 (401)
T PF06785_consen 201 AYIGKLESKVQDLMYEIR 218 (401)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444444
No 324
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=93.31 E-value=3.4 Score=46.24 Aligned_cols=51 Identities=8% Similarity=-0.015 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 002980 663 DAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTE 713 (861)
Q Consensus 663 Ea~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L~e 713 (861)
+.+|.+.+.++...+.++..++............+...+..+..++..|..
T Consensus 151 ~~~~~~a~~~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~l~~ 201 (346)
T PRK10476 151 AQQVDQARTAQRDAEVSLNQALLQAQAAAAAVGGVDALVAQRAAREAALAI 201 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 444444554444444444422221111111122333445555555555544
No 325
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=93.30 E-value=4.5 Score=44.64 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002980 651 QVAEIASKLTIEDAKFRELQERK 673 (861)
Q Consensus 651 qv~elEsQL~~lEa~L~d~Q~EL 673 (861)
++++.+.++..++..|..++.++
T Consensus 136 ~~d~~~~~~~~a~~~l~~~~~~~ 158 (327)
T TIGR02971 136 DLDSKALKLRTAEEELEEALASR 158 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444544444444444443
No 326
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=93.29 E-value=2.6 Score=45.74 Aligned_cols=134 Identities=15% Similarity=0.133 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---H--HHHH
Q 002980 588 KVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIAS---K--LTIE 662 (861)
Q Consensus 588 ela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEs---Q--L~~l 662 (861)
.+..++.++..+..+++.|..+.......-........++..+...+...|..|...|.+...++..+.. . -..+
T Consensus 46 ~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l 125 (264)
T PF06008_consen 46 QLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDL 125 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHH
Confidence 3445555555555555667777776666666666777777677777777777777777666666655544 1 1222
Q ss_pred HHHHHHHHHHHHHHHH-------HHH--HHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhHhcCcc
Q 002980 663 DAKFRELQERKMELHQ-------AIV--NMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGID 721 (861)
Q Consensus 663 Ea~L~d~Q~EL~eLqq-------eIq--kLe~~~~~n~~Lkera~~in~el~eL~~~L~e~~~~~g~~ 721 (861)
...|.+++.-|.+++. +.. +|++-..-....+......+.+...|.+.+.++...|.-+
T Consensus 126 ~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~k 193 (264)
T PF06008_consen 126 QRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAK 193 (264)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHH
Confidence 2222333322222211 111 2222222222334444455566677777777776666544
No 327
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.28 E-value=0.12 Score=57.39 Aligned_cols=72 Identities=21% Similarity=0.394 Sum_probs=61.0
Q ss_pred CCHHH-HHHHHHHHHhhCCCCCCccCHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHH
Q 002980 401 MKPSD-IQKYSKVFMEVDTDRDGRITGEQARNLFMSW--RLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMER 472 (861)
Q Consensus 401 ISped-k~~Y~~iF~~lD~d~dG~Isg~ea~~~f~ks--gLp~e~L~~IW~LaD~d~dG~LdkdEF~vAMhLI~~ 472 (861)
+++++ +.+...||.++|.++||+|+-.+++...+.+ +.-.....+-|...|.|+||.|+++|+..++|-.+.
T Consensus 70 l~~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~ 144 (325)
T KOG4223|consen 70 LTPEESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVD 144 (325)
T ss_pred hCcchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhccc
Confidence 44444 5788899999999999999999999988755 667778888899999999999999999998886543
No 328
>PRK11281 hypothetical protein; Provisional
Probab=93.20 E-value=1.2 Score=57.59 Aligned_cols=48 Identities=13% Similarity=0.093 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 002980 634 DRREAETLGKKYEEKYKQVAEIASKLTIE-------DAKFRELQERKMELHQAIV 681 (861)
Q Consensus 634 ~kreIesLr~k~ee~~kqv~elEsQL~~l-------Ea~L~d~Q~EL~eLqqeIq 681 (861)
++..+..+..+.++.++++.+++++|..+ .+.+.+.+.++++++.++.
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~ 180 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLK 180 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444445555555554333 4444444444555544443
No 329
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.20 E-value=3.6 Score=47.82 Aligned_cols=133 Identities=15% Similarity=0.123 Sum_probs=75.8
Q ss_pred hhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVL--YKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASK 658 (861)
Q Consensus 581 E~~elekela~Le~qi~~sree~e~LrsQlQEL~~--~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQ 658 (861)
.+.+++.+|.-+..++.+..+..+.|+++++.|-. .+-.-.+++.|+..++-+.+.+|..+-.+--+.+|++..+..+
T Consensus 346 ~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~ 425 (521)
T KOG1937|consen 346 RIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEA 425 (521)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677777777776555555566666666544 2333466777776666666666665555555555555555555
Q ss_pred H----------------------------HHHHHHHH----------HHHHHHHHHHHHHHH--HhccCcchhhHHHHHH
Q 002980 659 L----------------------------TIEDAKFR----------ELQERKMELHQAIVN--MERGGSADGLLQVRAD 698 (861)
Q Consensus 659 L----------------------------~~lEa~L~----------d~Q~EL~eLqqeIqk--Le~~~~~n~~Lkera~ 698 (861)
| +.+..+.. .++.+..+|+.+|-- +.+-....+.|.+-++
T Consensus 426 L~Rsfavtdellf~sakhddhvR~aykllt~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~E~~k~~l~slEkl~~Dyq 505 (521)
T KOG1937|consen 426 LNRSFAVTDELLFMSAKHDDHVRLAYKLLTRIHLNCMEILEMIRETGALKREVRDLESQIYVEEQKQYLKSLEKLHQDYQ 505 (521)
T ss_pred HhhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 4 11111111 233444455555541 2223336677778888
Q ss_pred HHHHHHHHHHHHHHH
Q 002980 699 RIQSDLEELLKALTE 713 (861)
Q Consensus 699 ~in~el~eL~~~L~e 713 (861)
.|..+.++|++.+++
T Consensus 506 airqen~~L~~~iR~ 520 (521)
T KOG1937|consen 506 AIRQENDQLFSEIRL 520 (521)
T ss_pred HHHHHHHHHHHHHhc
Confidence 888888888777653
No 330
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=93.18 E-value=3.2 Score=41.79 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 002980 588 KVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEI 627 (861)
Q Consensus 588 ela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei 627 (861)
++.+|..+++-++++++.|+.++..|..-++++..-+..+
T Consensus 7 ~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl 46 (145)
T COG1730 7 ELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETL 46 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666665666666777777777776666555544433
No 331
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=93.16 E-value=0.9 Score=51.22 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 002980 692 LLQVRADRIQSDLEELLKALT 712 (861)
Q Consensus 692 ~Lkera~~in~el~eL~~~L~ 712 (861)
.|+.+.+..+...+.+...+.
T Consensus 282 ~L~re~~~a~~~y~~~l~r~~ 302 (362)
T TIGR01010 282 RLVLQNELAQQQLKAALTSLQ 302 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444333
No 332
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.11 E-value=3.5 Score=50.17 Aligned_cols=28 Identities=32% Similarity=0.405 Sum_probs=15.5
Q ss_pred HHhccCcchhhHHHHHHHHHHHHHHHHH
Q 002980 682 NMERGGSADGLLQVRADRIQSDLEELLK 709 (861)
Q Consensus 682 kLe~~~~~n~~Lkera~~in~el~eL~~ 709 (861)
.|.+-..-...||++...+++++-++.+
T Consensus 269 ~~re~~~tv~~LqeE~e~Lqskl~~~~~ 296 (716)
T KOG4593|consen 269 TLRENRETVGLLQEELEGLQSKLGRLEK 296 (716)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3334444555666666666666655544
No 333
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=93.10 E-value=1.7 Score=53.85 Aligned_cols=46 Identities=24% Similarity=0.223 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHH
Q 002980 666 FRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKAL 711 (861)
Q Consensus 666 L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L 711 (861)
+..++.++.+|++++.+++....+.-..+.++.+++.+.+-.+..+
T Consensus 341 v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY 386 (726)
T PRK09841 341 YRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVY 386 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666655566666666666666665544433
No 334
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=93.07 E-value=1.9 Score=52.96 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=11.3
Q ss_pred hhhhcccCCCC-cccccccc
Q 002980 748 DWDKFEDAGFG-NEITFDVK 766 (861)
Q Consensus 748 ~wd~~~d~~f~-~~~~~~~~ 766 (861)
-|||..+..++ .|+-.+++
T Consensus 363 ~fdkVf~p~~sQ~~VF~e~~ 382 (670)
T KOG0239|consen 363 KFDKVFGPLASQDDVFEEVS 382 (670)
T ss_pred eeeeecCCcccHHHHHHHHH
Confidence 37778888777 44433433
No 335
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=93.07 E-value=0.18 Score=58.92 Aligned_cols=62 Identities=18% Similarity=0.307 Sum_probs=55.1
Q ss_pred cHHHHHHHHHhhCCCCCCccCHHHHHHHHHhCCCC-----HHHHHHHHHHhCCCCCCCcCHHHHHHHH
Q 002980 5 NQDQFESFFRRADLDGDGRISGAEAVAFFQGSNLP-----KQVLAQIWMHADHNHTSYLGRQEFYNAL 67 (861)
Q Consensus 5 e~~~y~~iF~~~D~DgDG~ISg~E~~~~f~~SgLp-----~~~L~qIW~laD~d~DG~Ls~~EF~~Al 67 (861)
|.....+.|..+| |++|+|+..|+...|...+++ .+.+.+|....+.|.+|.++++||+.++
T Consensus 17 El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~ 83 (627)
T KOG0046|consen 17 ELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIF 83 (627)
T ss_pred HHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHH
Confidence 4456788999999 999999999999999987654 6889999999999999999999999853
No 336
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=93.07 E-value=2.1 Score=40.18 Aligned_cols=29 Identities=14% Similarity=0.361 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 002980 600 REKIEFYRSKMQELVLYKSRCDNRLNEIT 628 (861)
Q Consensus 600 ree~e~LrsQlQEL~~~Ksr~e~~L~ei~ 628 (861)
..+...|+.+++.|...++..+..++|..
T Consensus 5 ~~~~q~l~~~~~~l~~~~~~l~~~~~E~~ 33 (105)
T cd00632 5 LAQLQQLQQQLQAYIVQRQKVEAQLNENK 33 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777766666666666543
No 337
>PRK09343 prefoldin subunit beta; Provisional
Probab=93.06 E-value=2.6 Score=40.89 Aligned_cols=36 Identities=19% Similarity=0.257 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 002980 592 REKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEI 627 (861)
Q Consensus 592 Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei 627 (861)
+..+++..-.+...++.+++.+..++...+..+++.
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~ 40 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREI 40 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555566666666666666666655543
No 338
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=93.03 E-value=1.9 Score=51.34 Aligned_cols=43 Identities=30% Similarity=0.459 Sum_probs=19.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHhcCccccccceeecCC
Q 002980 689 ADGLLQVRADRIQSDLEELLKALTERCKKHGIDVKSHAVIELPF 732 (861)
Q Consensus 689 ~n~~Lkera~~in~el~eL~~~L~e~~~~~g~~~~~~~~~e~p~ 732 (861)
+...-|.++..|-+..+.|...|.+.|-..|+...... ||||+
T Consensus 236 el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~-~el~~ 278 (511)
T PF09787_consen 236 ELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNS-IELEE 278 (511)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccch-hcchh
Confidence 33344444444445555555555554444444433222 45544
No 339
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.02 E-value=4.3 Score=51.53 Aligned_cols=63 Identities=24% Similarity=0.384 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-cchhhHHHHHHHHHHHHHHHHHHHH
Q 002980 650 KQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGG-SADGLLQVRADRIQSDLEELLKALT 712 (861)
Q Consensus 650 kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~-~~n~~Lkera~~in~el~eL~~~L~ 712 (861)
++++++.+++..++..+..++.++..|...+..|.... +....++++.+.++..+++|++.+.
T Consensus 315 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 378 (908)
T COG0419 315 EELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELE 378 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555555555555442222 2333444555555555455444443
No 340
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=92.99 E-value=5.6 Score=40.21 Aligned_cols=90 Identities=14% Similarity=0.154 Sum_probs=56.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 586 GKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITE------RALADRREAETLGKKYEEKYKQVAEIASKL 659 (861)
Q Consensus 586 ekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e------~~s~~kreIesLr~k~ee~~kqv~elEsQL 659 (861)
.++++++..++.+.+.+.+.+.+|+..|..|+.+..+++++.-. +......=|..|...|++..+.+.....+|
T Consensus 15 ~k~~e~a~~el~k~~~~~~~~~~qL~~l~~y~~ey~q~~~~k~~~G~s~~q~~nyq~fI~~Le~~I~q~~~~~~~~~~~v 94 (148)
T COG2882 15 KKEEEEAAIELSKIRSEKENAEEQLKMLSGYRNEYEQNLNEKLKSGVSAAQWQNYQQFISQLEVAIDQQQSQLSKLRKQV 94 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777778888888899999999999999998888764321 111123334455555555555555555555
Q ss_pred HHHHHHHHHHHHHHHH
Q 002980 660 TIEDAKFRELQERKME 675 (861)
Q Consensus 660 ~~lEa~L~d~Q~EL~e 675 (861)
......+..++.++..
T Consensus 95 e~~r~~w~ek~~~~k~ 110 (148)
T COG2882 95 EQKREIWQEKQIELKA 110 (148)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555444433
No 341
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=92.97 E-value=4 Score=44.69 Aligned_cols=127 Identities=16% Similarity=0.232 Sum_probs=61.7
Q ss_pred hhhhHHhhhHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHH
Q 002980 580 QDSTTAGKKVDEREKVILDSREKIEFYRSKM---------------QELVLYKSRCDNRLNEITERALADRREAETLGKK 644 (861)
Q Consensus 580 qE~~elekela~Le~qi~~sree~e~LrsQl---------------QEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k 644 (861)
..+..|+.++..|+.+|.+.++++.+|++=+ -+|+.-|.+.+.+|.++.+.+. .++.+|..+
T Consensus 81 ~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~---~el~~l~~~ 157 (258)
T PF15397_consen 81 SKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQ---MELASLSRK 157 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 4577788888888888887777755443311 1222233344455554444433 344444444
Q ss_pred HHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHH
Q 002980 645 YEEKYKQVAE-IASKL-TIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALT 712 (861)
Q Consensus 645 ~ee~~kqv~e-lEsQL-~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L~ 712 (861)
++++.++|-. +-.+. .-....+...=.+-..+..+|. .-......|+++|..+..++.+|..+..
T Consensus 158 ~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~---~~re~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 158 IQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIV---QFREEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444333321 11111 1112222222233333444443 2233555667777777777777666544
No 342
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=92.94 E-value=5.5 Score=37.05 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002980 662 EDAKFRELQERKMELHQAIV 681 (861)
Q Consensus 662 lEa~L~d~Q~EL~eLqqeIq 681 (861)
++..+..++..+.+|...+.
T Consensus 77 l~~q~~~l~~~l~~l~~~~~ 96 (127)
T smart00502 77 LEQQLESLTQKQEKLSHAIN 96 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444443333
No 343
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=92.94 E-value=2.9 Score=43.79 Aligned_cols=95 Identities=24% Similarity=0.340 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVN 682 (861)
Q Consensus 603 ~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqk 682 (861)
+..++..+.+|+.-|.++.+.+.+. ..+.+++.+......++++.+..+|..+-.+|.+...+...-+
T Consensus 88 V~~l~~RL~kLL~lk~~~~~~~e~~-----------k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke- 155 (190)
T PF05266_consen 88 VKFLRSRLNKLLSLKDDQEKLLEER-----------KKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKE- 155 (190)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHH-----------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4566666666666666555544432 2233333333233344444444444444444444333333322
Q ss_pred HhccCcchhhHHHHHHHHHHHHHHHHHHH
Q 002980 683 MERGGSADGLLQVRADRIQSDLEELLKAL 711 (861)
Q Consensus 683 Le~~~~~n~~Lkera~~in~el~eL~~~L 711 (861)
....++..||..++.|+.++..++-..
T Consensus 156 --~~~~ei~~lks~~~~l~~~~~~~e~~F 182 (190)
T PF05266_consen 156 --AKDKEISRLKSEAEALKEEIENAELEF 182 (190)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223456666777777776666665444
No 344
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=92.93 E-value=0.087 Score=56.41 Aligned_cols=62 Identities=23% Similarity=0.356 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhhCCCCCCccCHHHHHHHHHh-----cCCCHHHHHHHHHhhCCCCCCccCHHHHHH
Q 002980 404 SDIQKYSKVFMEVDTDRDGRITGEQARNLFMS-----WRLPREVLKQVWDLSDQDSDSMLSLREFCF 465 (861)
Q Consensus 404 edk~~Y~~iF~~lD~d~dG~Isg~ea~~~f~k-----sgLp~e~L~~IW~LaD~d~dG~LdkdEF~v 465 (861)
.-+.++..||.++|.+.||+|+..|++.-.++ +.-..++-+-.++.+|+|+||.+..+||-+
T Consensus 98 rsrrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykv 164 (362)
T KOG4251|consen 98 RSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKV 164 (362)
T ss_pred HHHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhh
Confidence 55678999999999999999999999876653 244556667778999999999999999965
No 345
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=92.89 E-value=9 Score=40.63 Aligned_cols=51 Identities=18% Similarity=0.183 Sum_probs=32.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 631 ALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (861)
Q Consensus 631 ~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIq 681 (861)
+......+..|..+|+.....|..++.+|..++..|...+.+...|....+
T Consensus 94 k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~ 144 (219)
T TIGR02977 94 KQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQ 144 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455566677777777777777777777777777777776665554443
No 346
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=92.86 E-value=8.6 Score=45.51 Aligned_cols=47 Identities=9% Similarity=0.065 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-cchhhHHHHHHHHHHHHHHHHH
Q 002980 663 DAKFRELQERKMELHQAIVNMERGG-SADGLLQVRADRIQSDLEELLK 709 (861)
Q Consensus 663 Ea~L~d~Q~EL~eLqqeIqkLe~~~-~~n~~Lkera~~in~el~eL~~ 709 (861)
+.-|+=++++|...+..+++++... ++...|+++|+++..--.+|..
T Consensus 139 ~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ 186 (475)
T PRK10361 139 NSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQ 186 (475)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666555433 3556777777766544444443
No 347
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=92.84 E-value=1.5 Score=44.38 Aligned_cols=52 Identities=15% Similarity=0.329 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 002980 663 DAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCK 716 (861)
Q Consensus 663 Ea~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L~e~~~ 716 (861)
...+..++.|+.+|+..|..|..+... .-.+.+..+..+...+.+....|-+
T Consensus 115 ~~~i~~l~~e~~~l~~kL~~l~~~~~~--vs~ee~~~~~~~~~~~~k~w~kRKr 166 (169)
T PF07106_consen 115 REEIEELEEEIEELEEKLEKLRSGSKP--VSPEEKEKLEKEYKKWRKEWKKRKR 166 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444432222 2244555555555555555554433
No 348
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=92.84 E-value=6.3 Score=39.62 Aligned_cols=44 Identities=18% Similarity=0.152 Sum_probs=31.1
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002980 641 LGKKY-EEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (861)
Q Consensus 641 Lr~k~-ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe 684 (861)
|++.+ .-..+-+..++++|..|..-+++...++.+|+..|..++
T Consensus 87 l~~~~~~~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~ 131 (146)
T PF08702_consen 87 LRKMIIYILETKIINQPSNIRVLQNILRSNRQKIQRLEQDIDQQE 131 (146)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 444466777888888888888888888888888887443
No 349
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=92.80 E-value=3.3 Score=51.79 Aligned_cols=50 Identities=8% Similarity=0.131 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHH
Q 002980 660 TIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKA 710 (861)
Q Consensus 660 ~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~ 710 (861)
..++..+++++.+..++-.++.++.. +......++.++.+...+.++.+.
T Consensus 573 ~~a~~~l~~a~~~~~~~i~~lk~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 622 (782)
T PRK00409 573 KEAQQAIKEAKKEADEIIKELRQLQK-GGYASVKAHELIEARKRLNKANEK 622 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-cccchhhHHHHHHHHHHHHHhhhh
Confidence 44566777777777776666664321 111112344445555555555544
No 350
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=92.79 E-value=6.7 Score=41.61 Aligned_cols=34 Identities=15% Similarity=0.265 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 650 KQVAEIASKLTIEDAKFRELQERKMELHQAIVNM 683 (861)
Q Consensus 650 kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkL 683 (861)
.++..++.++..++..+..++.++.+|+..|..+
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~ 132 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEA 132 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555533
No 351
>PRK11519 tyrosine kinase; Provisional
Probab=92.79 E-value=2.6 Score=52.15 Aligned_cols=43 Identities=21% Similarity=0.188 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHH
Q 002980 667 RELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLK 709 (861)
Q Consensus 667 ~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~ 709 (861)
..++.++..|++++.+++......-..+.++.+++.+.+-.++
T Consensus 342 ~~l~~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~ 384 (719)
T PRK11519 342 RTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQ 384 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3445555556666665555555555555555555555544443
No 352
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=92.71 E-value=0.039 Score=54.39 Aligned_cols=94 Identities=15% Similarity=0.229 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 002980 636 REAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERC 715 (861)
Q Consensus 636 reIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L~e~~ 715 (861)
..+..+..++++..+.+.....+|..++..+.++...+..|...+..|+.....+..|.+.|.+|...|++-..+ ..+-
T Consensus 31 ~~~~~~~~~v~~t~~~~~~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~~~~~~~ls~nI~~IrelI~qAR~~-An~I 109 (138)
T PF06009_consen 31 ENLGEINSDVEETNQDISDANKALDDANNSVKNLEQLAPDLLDKLKPLENLSENNSNLSRNISRIRELIAQARDA-ANRI 109 (138)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH-Hhhe
Confidence 334444433333334444444444444444444444444444444444333333333444444444333333333 2233
Q ss_pred HhcCccccccceeecC
Q 002980 716 KKHGIDVKSHAVIELP 731 (861)
Q Consensus 716 ~~~g~~~~~~~~~e~p 731 (861)
++|++|.....|||.
T Consensus 110 -kV~m~F~g~s~velr 124 (138)
T PF06009_consen 110 -KVSMKFNGNSGVELR 124 (138)
T ss_dssp ---B-------EEEE-
T ss_pred -eeeeEECCCceeeeC
Confidence 389999999999874
No 353
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=92.70 E-value=3.1 Score=53.93 Aligned_cols=71 Identities=14% Similarity=0.206 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 002980 644 KYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV----NMERGGSADGLLQVRADRIQSDLEELLKALTER 714 (861)
Q Consensus 644 k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIq----kLe~~~~~n~~Lkera~~in~el~eL~~~L~e~ 714 (861)
++.+...++.++++++..+...+..+..++.+|.+.++ .|++.+.+...++.+.+..+....+....++||
T Consensus 872 ~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~ 946 (1294)
T KOG0962|consen 872 KIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEK 946 (1294)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555555555555555 333444444444444333333333333444443
No 354
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=92.69 E-value=4.1 Score=49.42 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=46.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--------------HHhccCcc
Q 002980 626 EITERALADRREAETLGKKYEEKYKQVAEIASKLTIE--DAKFRELQERKMELHQAIV--------------NMERGGSA 689 (861)
Q Consensus 626 ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~l--Ea~L~d~Q~EL~eLqqeIq--------------kLe~~~~~ 689 (861)
+-..++++++++++.+.++-+-..+++++|...|+.. ..+|..+-+.+..|..|=+ ||...+++
T Consensus 406 e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke 485 (961)
T KOG4673|consen 406 EYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKE 485 (961)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Confidence 3446777777777777777777667777666555322 3344444444444444322 55555554
Q ss_pred hhhH----HHHHHHHHHHHHHHHHHH
Q 002980 690 DGLL----QVRADRIQSDLEELLKAL 711 (861)
Q Consensus 690 n~~L----kera~~in~el~eL~~~L 711 (861)
++.| -+.|..+++++..|+..|
T Consensus 486 ~etl~~K~ge~i~~L~sE~~~lk~il 511 (961)
T KOG4673|consen 486 AETLEEKKGELITKLQSEENKLKSIL 511 (961)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 4432 234445555555554433
No 355
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=92.69 E-value=2.2 Score=51.82 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 002980 655 IASKLTIEDAKFRELQERKMELHQAIVNMERGGS 688 (861)
Q Consensus 655 lEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~ 688 (861)
+++.|+..-.++..+.++++.|.+++..+++...
T Consensus 200 vdErlqlhlkermaAle~kn~L~~e~~s~kk~l~ 233 (916)
T KOG0249|consen 200 VDERLQLHLKERMAALEDKNRLEQELESVKKQLE 233 (916)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555556666666666666664443333
No 356
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=92.67 E-value=5.6 Score=39.49 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=11.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 584 TAGKKVDEREKVILDSREKIEFYRSKMQEL 613 (861)
Q Consensus 584 elekela~Le~qi~~sree~e~LrsQlQEL 613 (861)
++.+++..+..++...+..++.+...-+.|
T Consensus 37 ~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L 66 (213)
T cd00176 37 ALLKKHEALEAELAAHEERVEALNELGEQL 66 (213)
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 333334444444443333333333333333
No 357
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=92.67 E-value=3.6 Score=52.77 Aligned_cols=11 Identities=27% Similarity=0.516 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 002980 404 SDIQKYSKVFM 414 (861)
Q Consensus 404 edk~~Y~~iF~ 414 (861)
.=...|.+|-+
T Consensus 285 slveTY~KIm~ 295 (1317)
T KOG0612|consen 285 SLVETYGKIMN 295 (1317)
T ss_pred HHHHHHHHHhc
Confidence 33445555543
No 358
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=92.64 E-value=1.1 Score=39.96 Aligned_cols=12 Identities=33% Similarity=0.518 Sum_probs=7.1
Q ss_pred HhhhHHHHHHHH
Q 002980 585 AGKKVDEREKVI 596 (861)
Q Consensus 585 lekela~Le~qi 596 (861)
+++.|++.+.+|
T Consensus 3 l~~~l~EKDe~I 14 (74)
T PF12329_consen 3 LEKKLAEKDEQI 14 (74)
T ss_pred HHHHHHhHHHHH
Confidence 345566666666
No 359
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=92.61 E-value=3.8 Score=46.76 Aligned_cols=48 Identities=29% Similarity=0.400 Sum_probs=28.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 630 RALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELH 677 (861)
Q Consensus 630 ~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLq 677 (861)
.+..++|+++.|..+|.++.-.+.-+..++...+..|+..|.|-++|.
T Consensus 422 elqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELn 469 (593)
T KOG4807|consen 422 ELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELN 469 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 334455666666666666655556666666666666666666555554
No 360
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=92.52 E-value=1.3 Score=54.35 Aligned_cols=44 Identities=16% Similarity=0.198 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 638 AETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (861)
Q Consensus 638 IesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIq 681 (861)
+..|....+...+.+..+..+|..++.++.+++.+...|+.+++
T Consensus 229 ~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~ 272 (670)
T KOG0239|consen 229 IKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQ 272 (670)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444444444444444444443
No 361
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=92.52 E-value=2.3 Score=44.93 Aligned_cols=117 Identities=13% Similarity=0.190 Sum_probs=77.0
Q ss_pred hhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 580 QDSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALA-DRREAETLGKKYEEKYKQVAEIASK 658 (861)
Q Consensus 580 qE~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~-~kreIesLr~k~ee~~kqv~elEsQ 658 (861)
.+|+.+.+.|..++.++...+.++...+..+......++..+.+++++-.++.. -..+++....-| +.=...+..
T Consensus 32 s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs~~DleRFT~Ly----r~dH~~e~~ 107 (207)
T PF05546_consen 32 SEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSWSPADLERFTELY----RNDHENEQA 107 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHH----HhhhhhHHH
Confidence 478899999999999999999999999999999999999999999998877654 355666544333 333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hccCcchhhHHHHHHHH
Q 002980 659 LTIEDAKFRELQERKMELHQAIVNM-ERGGSADGLLQVRADRI 700 (861)
Q Consensus 659 L~~lEa~L~d~Q~EL~eLqqeIqkL-e~~~~~n~~Lkera~~i 700 (861)
+..+...|.++..+.+++...|.+- -..-.+...=-++||++
T Consensus 108 e~~ak~~l~~aE~~~e~~~~~L~~~Il~RYHEEQiWSDKIRr~ 150 (207)
T PF05546_consen 108 EEEAKEALEEAEEKVEEAFDDLMRAILTRYHEEQIWSDKIRRA 150 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4444444444444444444444300 02222444555556554
No 362
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=92.51 E-value=2.1 Score=44.55 Aligned_cols=108 Identities=19% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-chhhH
Q 002980 615 LYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGS-ADGLL 693 (861)
Q Consensus 615 ~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~-~n~~L 693 (861)
.......+.+.+++.++...+.++..|+.+++.....-.+-+++.. +-+.|+.++.++.+|+.++.++...-- ....+
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~-~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~ 140 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREE-LLEELEELKKELKELKKELEKYSENDPEKIEKL 140 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHhHh-cCcccc
Q 002980 694 QVRADRIQSDLEELLK---ALTERCKK-HGIDVK 723 (861)
Q Consensus 694 kera~~in~el~eL~~---~L~e~~~~-~g~~~~ 723 (861)
++.+......++.-.. .|..+|++ +|+..+
T Consensus 141 ~~~~~~~~~~anrwTDNI~~l~~~~~~k~~~~~~ 174 (188)
T PF03962_consen 141 KEEIKIAKEAANRWTDNIFSLKSYLKKKFGMDEE 174 (188)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCHH
No 363
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=92.46 E-value=0.23 Score=55.46 Aligned_cols=97 Identities=10% Similarity=0.150 Sum_probs=17.5
Q ss_pred hhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLT 660 (861)
Q Consensus 581 E~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~ 660 (861)
.+.+++.+|.++...|.+.+.++..++.+...|+..-..+...+..+...+......|..|+..|....-+|.++...|.
T Consensus 57 ~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVS 136 (326)
T PF04582_consen 57 TISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVS 136 (326)
T ss_dssp -------------------------------------------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhh
Confidence 34444555555555554455555555555555554444444444444444444444444555444444455555555554
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002980 661 IEDAKFRELQERKMELH 677 (861)
Q Consensus 661 ~lEa~L~d~Q~EL~eLq 677 (861)
.....+.+++.+++.|+
T Consensus 137 t~aL~ItdLe~RV~~LE 153 (326)
T PF04582_consen 137 TQALNITDLESRVKALE 153 (326)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhcchHhhHHHHHHHHh
Confidence 44444444444444444
No 364
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.44 E-value=0.91 Score=55.22 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 650 KQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (861)
Q Consensus 650 kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIq 681 (861)
+.++++..+|..++.+..+.-++..++..+|.
T Consensus 160 ~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~ 191 (660)
T KOG4302|consen 160 EKLEELREHLNELQKEKSDRLEKVLELKEEIK 191 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555
No 365
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=92.42 E-value=1.2 Score=47.25 Aligned_cols=61 Identities=18% Similarity=0.183 Sum_probs=39.3
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 621 DNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (861)
Q Consensus 621 e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIq 681 (861)
+.+...++++...++.++++..++++...++++.+..|......++..+-+|.+.|+.+|+
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 3344444455556666666666666666667777777776666777777777777776665
No 366
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=92.40 E-value=0.038 Score=67.83 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002980 603 IEFYRSKMQELVLYKSR 619 (861)
Q Consensus 603 ~e~LrsQlQEL~~~Ksr 619 (861)
++.|++|++++..||.+
T Consensus 317 ve~YKkKLed~~~lk~q 333 (713)
T PF05622_consen 317 VEKYKKKLEDLEDLKRQ 333 (713)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555443
No 367
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=92.40 E-value=0.18 Score=33.70 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=17.5
Q ss_pred HHHHHHHhCCCCCCCcCHHHHHHHHH
Q 002980 43 LAQIWMHADHNHTSYLGRQEFYNALK 68 (861)
Q Consensus 43 L~qIW~laD~d~DG~Ls~~EF~~Al~ 68 (861)
+..+|..+|.+++|+|++.||..+++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 45567777777777777777766654
No 368
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=92.35 E-value=3.1 Score=44.37 Aligned_cols=72 Identities=25% Similarity=0.238 Sum_probs=46.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----chhhHHHHHHHHHHHH
Q 002980 633 ADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGS----ADGLLQVRADRIQSDL 704 (861)
Q Consensus 633 ~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~----~n~~Lkera~~in~el 704 (861)
.+++..+.++.|+++.++.-.++-..+..+|++++..|.+|..|+-+...|++.-+ +-..|+.|.+.+.-.+
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccc
Confidence 45666777777777777777777777777777777777777777777665544322 3334555555444443
No 369
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=92.35 E-value=10 Score=40.77 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002980 663 DAKFRELQERKMELHQAIV 681 (861)
Q Consensus 663 Ea~L~d~Q~EL~eLqqeIq 681 (861)
|.....+..++.+|...+.
T Consensus 120 e~~~~~l~~~l~~l~~~~~ 138 (247)
T PF06705_consen 120 EELNQELVRELNELQEAFE 138 (247)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444
No 370
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=92.33 E-value=12 Score=39.94 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHH--------HHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 002980 663 DAKFRELQERKMELHQAIV--------NMERGGSADGLLQVRADRIQSDLEELLKALTERCK 716 (861)
Q Consensus 663 Ea~L~d~Q~EL~eLqqeIq--------kLe~~~~~n~~Lkera~~in~el~eL~~~L~e~~~ 716 (861)
+..|+.+..++.+++...+ +|...+-+...|++.+.+-..+.+||.+---|.-.
T Consensus 142 eekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~ 203 (207)
T PF05010_consen 142 EEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELIS 203 (207)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554432 23233336667777777777777766654444333
No 371
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=92.32 E-value=3.6 Score=40.49 Aligned_cols=47 Identities=11% Similarity=0.207 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 637 EAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNM 683 (861)
Q Consensus 637 eIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkL 683 (861)
.|+.|-.++|+...-.+.+.++|..+...+.+++.++..++..+..|
T Consensus 69 RId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~L 115 (126)
T PF07889_consen 69 RIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGL 115 (126)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444433
No 372
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.31 E-value=6.5 Score=46.31 Aligned_cols=59 Identities=25% Similarity=0.209 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 002980 623 RLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKF---RELQERKMELHQAIV 681 (861)
Q Consensus 623 ~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L---~d~Q~EL~eLqqeIq 681 (861)
++.++..|+-.+-+.++.||+.=-....+-++|+.||..+-+.+ ++++.+|.+|.+.+.
T Consensus 384 r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kldtll~~ln~Pnq~k~Rl~~L~e~~r 445 (508)
T KOG3091|consen 384 RHVELSHRILRVMIKQEILRKRGYALTPDEEELRAKLDTLLAQLNAPNQLKARLDELYEILR 445 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 34444444444444444444322122233334444443332222 445555555555444
No 373
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.26 E-value=3.3 Score=48.12 Aligned_cols=117 Identities=15% Similarity=0.113 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH------------------------H
Q 002980 602 KIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIA------------------------S 657 (861)
Q Consensus 602 e~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elE------------------------s 657 (861)
+.......++.|+.+|.|+-.-|.+-....+++...|..+++++.+..+|.+... .
T Consensus 266 q~~e~~selE~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~ 345 (521)
T KOG1937|consen 266 QFEEQNSELEKLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIR 345 (521)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHH
Confidence 3556667777788888877666665555555555555555555555444433221 1
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHhcc---------Cc----chhhHHHHHHHHHHHHHHHHHHHHHHhHh
Q 002980 658 KLTIEDAKFRELQERKM-------ELHQAIVNMERG---------GS----ADGLLQVRADRIQSDLEELLKALTERCKK 717 (861)
Q Consensus 658 QL~~lEa~L~d~Q~EL~-------eLqqeIqkLe~~---------~~----~n~~Lkera~~in~el~eL~~~L~e~~~~ 717 (861)
+|..+|..|..+-+|++ .|+.++++|..+ +. -...+++.|-.|..+.-+|++++|.-.-+
T Consensus 346 ~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~ 425 (521)
T KOG1937|consen 346 RIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEA 425 (521)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333444444444443 344444433221 11 22356667777888888888888764443
Q ss_pred c
Q 002980 718 H 718 (861)
Q Consensus 718 ~ 718 (861)
+
T Consensus 426 L 426 (521)
T KOG1937|consen 426 L 426 (521)
T ss_pred H
Confidence 3
No 374
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=92.25 E-value=0.34 Score=40.42 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=38.4
Q ss_pred ccCHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHH
Q 002980 423 RITGEQARNLFMSW--RLPREVLKQVWDLSDQDSDSMLSLREFCFALYLM 470 (861)
Q Consensus 423 ~Isg~ea~~~f~ks--gLp~e~L~~IW~LaD~d~dG~LdkdEF~vAMhLI 470 (861)
+++..|++.+|..- .+..+-...+..-||.+++|+|+.+||.-+.+.+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 36889999999976 5778888999999999999999999998877654
No 375
>PRK00106 hypothetical protein; Provisional
Probab=92.25 E-value=7.2 Score=46.87 Aligned_cols=71 Identities=7% Similarity=0.109 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 611 QELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (861)
Q Consensus 611 QEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIq 681 (861)
+++..++.++++++++-+.++.+.++.+..-...++.+.+.++.-+.+|...+..|..++.++.+++.++.
T Consensus 79 eEi~~~R~ElEkel~eEr~rL~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~ 149 (535)
T PRK00106 79 EEARKYREEIEQEFKSERQELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVE 149 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555444322222222222232222223333344444444444444444444444444444433
No 376
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=92.19 E-value=6.5 Score=46.61 Aligned_cols=116 Identities=11% Similarity=0.194 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 604 EFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAE-IASKLTIEDAKFRELQERKMELHQAIVN 682 (861)
Q Consensus 604 e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~e-lEsQL~~lEa~L~d~Q~EL~eLqqeIqk 682 (861)
+..++.++.|..-..+.+..|+++.+++..+..+|+.|..+|+-...+++. |-..=...+-++...+++|..|-..++-
T Consensus 394 ~~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdtE~k~R~~eV~~vRqELa~lLssvQ~ 473 (531)
T PF15450_consen 394 SDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDTEGKAREREVGAVRQELATLLSSVQL 473 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677777777777777777777777776677777766555544443331 1111123344455555555555555553
Q ss_pred HhccCcchhhHHHHHHHHHHHHH-----HHHHHHHHHhHhcCccccc
Q 002980 683 MERGGSADGLLQVRADRIQSDLE-----ELLKALTERCKKHGIDVKS 724 (861)
Q Consensus 683 Le~~~~~n~~Lkera~~in~el~-----eL~~~L~e~~~~~g~~~~~ 724 (861)
|.++-. -..|..|+.+|+ .|...+..-....++||..
T Consensus 474 ~~e~~~-----~rkiaeiqg~l~~~qi~kle~siq~nKtiqn~kfnt 515 (531)
T PF15450_consen 474 LKEDNP-----GRKIAEIQGKLATNQIMKLENSIQTNKTIQNLKFNT 515 (531)
T ss_pred hcCCCh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 322222 122444444444 3444444444455666543
No 377
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=92.17 E-value=5.5 Score=41.72 Aligned_cols=89 Identities=15% Similarity=0.143 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhccCcchhhHHHHHH
Q 002980 623 RLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV----NMERGGSADGLLQVRAD 698 (861)
Q Consensus 623 ~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIq----kLe~~~~~n~~Lkera~ 698 (861)
-+.+....+..-+.+++.......+-..++..|..-|......+..++.-....+.++. -|+.-+.+.+.|..++.
T Consensus 82 vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~ 161 (188)
T PF05335_consen 82 VVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQ 161 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444455555555555555555544444444444444 24455667777888888
Q ss_pred HHHHHHHHHHHHH
Q 002980 699 RIQSDLEELLKAL 711 (861)
Q Consensus 699 ~in~el~eL~~~L 711 (861)
....|++..++.-
T Consensus 162 ~Ar~D~~~tk~aA 174 (188)
T PF05335_consen 162 AARADYEKTKKAA 174 (188)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888777654
No 378
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=92.15 E-value=5.8 Score=45.71 Aligned_cols=47 Identities=19% Similarity=0.148 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002980 603 IEFYRSKMQELVLYKSRC-DNRLNEITERALADRREAETLGKKYEEKY 649 (861)
Q Consensus 603 ~e~LrsQlQEL~~~Ksr~-e~~L~ei~e~~s~~kreIesLr~k~ee~~ 649 (861)
++.||..+=+|+++-..- +.-.|.+=.++.+++.+-..|.+|||+..
T Consensus 181 leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpv 228 (552)
T KOG2129|consen 181 LEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPV 228 (552)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 455555555554433322 22224444555566666777777776643
No 379
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=92.15 E-value=2.9 Score=45.78 Aligned_cols=95 Identities=12% Similarity=0.138 Sum_probs=47.9
Q ss_pred hhhhHHhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH---hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002980 580 QDSTTAGKKVDEREKVILDSREKIEFYRS----KMQELVLYKSRC---DNRLNEITERALADRREAETLGKKYEEKYKQV 652 (861)
Q Consensus 580 qE~~elekela~Le~qi~~sree~e~Lrs----QlQEL~~~Ksr~---e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv 652 (861)
+.|.+++..++.|..+-..-+=+++.|.. |.+..+..|.+. ..+...+.+.|..+++.-+.|. -++
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKls-------hdl 90 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLS-------HDL 90 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhh-------HHH
Confidence 56777777777776655443334444333 333232222211 1111111222332233333333 455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 653 AEIASKLTIEDAKFRELQERKMELHQAIV 681 (861)
Q Consensus 653 ~elEsQL~~lEa~L~d~Q~EL~eLqqeIq 681 (861)
..=|.+|..+|+.|+..+..+..|+++|.
T Consensus 91 q~Ke~qv~~lEgQl~s~Kkqie~Leqelk 119 (307)
T PF10481_consen 91 QVKESQVNFLEGQLNSCKKQIEKLEQELK 119 (307)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777777777777776
No 380
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.12 E-value=4.2 Score=51.26 Aligned_cols=107 Identities=12% Similarity=0.150 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVN 682 (861)
Q Consensus 603 ~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqk 682 (861)
+..+.+..+.++..+..++++..+++++|+...+++.....++.+....+.+++..+..+-.++..++.+-...+..|++
T Consensus 264 ~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~ 343 (1072)
T KOG0979|consen 264 LRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEK 343 (1072)
T ss_pred HHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555566666666666777777777777666676666666666666655555444444444444444442
Q ss_pred Hhcc----Cc------chhhHHHHHHHHHHHHHHHHH
Q 002980 683 MERG----GS------ADGLLQVRADRIQSDLEELLK 709 (861)
Q Consensus 683 Le~~----~~------~n~~Lkera~~in~el~eL~~ 709 (861)
..+. |. --..+++.+..+..++.+.+.
T Consensus 344 ~~k~i~~~q~el~~~~~~e~~~~~~~ei~~~~~~~~~ 380 (1072)
T KOG0979|consen 344 AKKMILDAQAELQETEDPENPVEEDQEIMKEVLQKKS 380 (1072)
T ss_pred HHHHHHHHHhhhhhcCCccccchhHHHHHHHHHHHHh
Confidence 2221 11 112455666666666665554
No 381
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=92.10 E-value=7.4 Score=46.93 Aligned_cols=55 Identities=11% Similarity=0.100 Sum_probs=31.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002980 632 LADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERG 686 (861)
Q Consensus 632 s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~ 686 (861)
.....+|+.|-..++.+.+.-..++..+..+..+|..++.+..+|..++..+.+.
T Consensus 281 ~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~s 335 (560)
T PF06160_consen 281 EEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQS 335 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444445566666666777777777777777777755543
No 382
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=92.03 E-value=6.6 Score=43.68 Aligned_cols=68 Identities=12% Similarity=0.118 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 599 SREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKF 666 (861)
Q Consensus 599 sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L 666 (861)
+++.-+.|..||.+.+.+-..++.+|..++...-+-.--++.+.....+.+-+++++|.-....++.+
T Consensus 142 lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv 209 (305)
T PF14915_consen 142 LKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKV 209 (305)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44444555555555555555555555444433332223344444444444444444444443333333
No 383
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=92.00 E-value=3.1 Score=38.72 Aligned_cols=11 Identities=27% Similarity=0.169 Sum_probs=5.0
Q ss_pred HHHHHHHHHhH
Q 002980 706 ELLKALTERCK 716 (861)
Q Consensus 706 eL~~~L~e~~~ 716 (861)
...+.+.+||.
T Consensus 112 ~~~~~i~~rl~ 122 (127)
T smart00502 112 LSKKLIIERLQ 122 (127)
T ss_pred HHHHHHHHHHH
Confidence 34444445443
No 384
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=91.97 E-value=4.1 Score=38.64 Aligned_cols=23 Identities=13% Similarity=0.336 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhH
Q 002980 603 IEFYRSKMQELVLYKSRCDNRLN 625 (861)
Q Consensus 603 ~e~LrsQlQEL~~~Ksr~e~~L~ 625 (861)
...|+.+++.+..++...+..++
T Consensus 12 ~q~~q~~~~~l~~q~~~le~~~~ 34 (110)
T TIGR02338 12 LQQLQQQLQAVATQKQQVEAQLK 34 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443333333
No 385
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=91.94 E-value=11 Score=39.89 Aligned_cols=146 Identities=18% Similarity=0.129 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 002980 604 EFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKY---KQVAEIASKLTIEDAKF----RELQERKMEL 676 (861)
Q Consensus 604 e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~---kqv~elEsQL~~lEa~L----~d~Q~EL~eL 676 (861)
..|+.++++|-. +.-++|+..+ .+=.+--.|=.||.+.. ++...++..|..+|..| -++..++..|
T Consensus 40 ~~~~~KY~~lR~---ElI~ELkqsK----klydnYYkL~~KY~~LK~~~~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~ 112 (196)
T PF15272_consen 40 TSYKEKYQQLRQ---ELINELKQSK----KLYDNYYKLYSKYQELKKSSKQSEDLQSRISNLEKQLVDQMIEKDREIRTL 112 (196)
T ss_pred hHHHHHHHHHHH---HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 356666666542 3333333211 23334444555555543 34445555665555555 3344555566
Q ss_pred HHHHHHHhccCcchh--hHHHHHHHHHHHHHHHHHHHHHHhHhcCccccccceeecCCCCCCCcccccccchhhhhhccc
Q 002980 677 HQAIVNMERGGSADG--LLQVRADRIQSDLEELLKALTERCKKHGIDVKSHAVIELPFGWQPGIQEGAGVWDEDWDKFED 754 (861)
Q Consensus 677 qqeIqkLe~~~~~n~--~Lkera~~in~el~eL~~~L~e~~~~~g~~~~~~~~~e~p~gw~~~~~e~a~~w~e~wd~~~d 754 (861)
+++|..++-..++.+ --.+++ ..++.|.+|+.+|+.+-...+-..-.+.. +-++..+--++.+ -|-.|.+.-.|
T Consensus 113 ~~~l~~~~~r~~el~~~r~~e~~-~YesRI~dLE~~L~~~n~~~~~~~~~s~~--~s~~~~~~~~~~~-~~~~d~n~s~d 188 (196)
T PF15272_consen 113 QDELLSLELRNKELQNERERERI-AYESRIADLERQLNSRNNSSNDNYVSSNS--YSTSSYSIPYETN-SPLSDYNDSID 188 (196)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHhcccCCCCCccccc--cCCCcCCcchhcc-cccccccchhh
Confidence 666665544333222 233444 78999999999999766544433322222 2335555556666 56555555555
Q ss_pred CCCCcc
Q 002980 755 AGFGNE 760 (861)
Q Consensus 755 ~~f~~~ 760 (861)
.-|.|+
T Consensus 189 t~flkn 194 (196)
T PF15272_consen 189 TQFLKN 194 (196)
T ss_pred HHHHhc
Confidence 555544
No 386
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=91.93 E-value=5.6 Score=47.55 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 647 EKYKQVAEIASKLTIEDAKFRELQERKMELHQAI 680 (861)
Q Consensus 647 e~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeI 680 (861)
...++++..+.+|...+.+|.+++.++.++.++.
T Consensus 101 kre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~ 134 (514)
T TIGR03319 101 KKEENLEKKEKELSNKEKNLDEKEEELEELIAEQ 134 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555544444433
No 387
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=91.92 E-value=8.2 Score=45.14 Aligned_cols=80 Identities=16% Similarity=0.099 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 605 FYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKY-------KQVAEIASKLTIEDAKFRELQERKMELH 677 (861)
Q Consensus 605 ~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~-------kqv~elEsQL~~lEa~L~d~Q~EL~eLq 677 (861)
.+.+.++.|+.--...+..|.|.+..+..+.-+++.+++.|-..+ .+-...-++....+..|..+.+++..|+
T Consensus 387 d~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ 466 (527)
T PF15066_consen 387 DIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQ 466 (527)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHH
Confidence 334444444444444455555555555556666665555544322 2222222333444555555555554444
Q ss_pred HHHHHHh
Q 002980 678 QAIVNME 684 (861)
Q Consensus 678 qeIqkLe 684 (861)
+.--+||
T Consensus 467 ~lkgelE 473 (527)
T PF15066_consen 467 QLKGELE 473 (527)
T ss_pred HHHHHHH
Confidence 4333333
No 388
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=91.92 E-value=3.3 Score=48.31 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 002980 663 DAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTE 713 (861)
Q Consensus 663 Ea~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L~e 713 (861)
..++.-++.+.+.|.+++..|+........++.++++++.+++-.+..+..
T Consensus 341 ~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~ 391 (458)
T COG3206 341 PNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYET 391 (458)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHH
Confidence 444555555555666666655555555566666666666666555554443
No 389
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=91.92 E-value=7.6 Score=39.16 Aligned_cols=120 Identities=12% Similarity=0.162 Sum_probs=0.0
Q ss_pred hhHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 582 STTAGKKVDEREKVILD-SREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLT 660 (861)
Q Consensus 582 ~~elekela~Le~qi~~-sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~ 660 (861)
....+.+|+.+..+|.+ .+.++..+......|...+..++..-.-++ ++|+.||++||...++++-+-.-+.
T Consensus 36 f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~R-------kEv~~vRkkID~vNreLkpl~~~cq 108 (159)
T PF04949_consen 36 FRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMR-------KEVEMVRKKIDSVNRELKPLGQSCQ 108 (159)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchH-------HHHHHHHHHHHHHHHHhhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCc-chhhHHHHHHHHHHHHHHHHHHH
Q 002980 661 IEDAKFRELQERKMELHQAIVNMERGGS-ADGLLQVRADRIQSDLEELLKAL 711 (861)
Q Consensus 661 ~lEa~L~d~Q~EL~eLqqeIqkLe~~~~-~n~~Lkera~~in~el~eL~~~L 711 (861)
..|.+|.....-.++...+=. ..+. -.+.+.+-.+.==..|++|-+.+
T Consensus 109 KKEkEykealea~nEknkeK~---~Lv~~L~eLv~eSE~~rmKKLEELsk~i 157 (159)
T PF04949_consen 109 KKEKEYKEALEAFNEKNKEKA---QLVTRLMELVSESERLRMKKLEELSKEI 157 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 390
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=91.92 E-value=2.2 Score=46.81 Aligned_cols=104 Identities=14% Similarity=0.170 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002980 605 FYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (861)
Q Consensus 605 ~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe 684 (861)
-|+++|+|-+..-.+-+.++.| ++..+..+|... ....+..+|.||+ |++++.|+.+|++-|+-|.
T Consensus 72 HLkakLkes~~~l~dRetEI~e-------LksQL~RMrEDW--IEEECHRVEAQLA-----LKEARkEIkQLkQvieTmr 137 (305)
T PF15290_consen 72 HLKAKLKESENRLHDRETEIDE-------LKSQLARMREDW--IEEECHRVEAQLA-----LKEARKEIKQLKQVIETMR 137 (305)
T ss_pred HHHHHHHHHHHHHHhhHHHHHH-------HHHHHHHHHHHH--HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 4455555554433333334443 333344444111 1134455555554 5666778888888888665
Q ss_pred ccCc-chhhHHHHHHHHHHHHHHHHHHHH--HHhHhcCccc
Q 002980 685 RGGS-ADGLLQVRADRIQSDLEELLKALT--ERCKKHGIDV 722 (861)
Q Consensus 685 ~~~~-~n~~Lkera~~in~el~eL~~~L~--e~~~~~g~~~ 722 (861)
..-. .++-+|.=--.||..--+|+..|. |.++.-++|-
T Consensus 138 ssL~ekDkGiQKYFvDINiQN~KLEsLLqsMElAq~g~~rd 178 (305)
T PF15290_consen 138 SSLAEKDKGIQKYFVDINIQNKKLESLLQSMELAQSGSLRD 178 (305)
T ss_pred hhhchhhhhHHHHHhhhhhhHhHHHHHHHHHHHHHhccccc
Confidence 5333 666777755555555555555554 4555444443
No 391
>PF14992 TMCO5: TMCO5 family
Probab=91.91 E-value=1.3 Score=48.66 Aligned_cols=17 Identities=12% Similarity=0.100 Sum_probs=10.1
Q ss_pred hhhHHhhhHHHHHHHHH
Q 002980 581 DSTTAGKKVDEREKVIL 597 (861)
Q Consensus 581 E~~elekela~Le~qi~ 597 (861)
-+.+++..+.+|+++|.
T Consensus 26 ki~~~E~~iq~Le~Eit 42 (280)
T PF14992_consen 26 KIQEKEGAIQSLEREIT 42 (280)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555566666666665
No 392
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=91.87 E-value=7 Score=45.13 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=24.0
Q ss_pred hhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 002980 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEIT 628 (861)
Q Consensus 581 E~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~ 628 (861)
++.+-++....+..|...++.+.+.++.+|++.+.--.+++.++..++
T Consensus 21 ~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~ 68 (459)
T KOG0288|consen 21 ELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLN 68 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444555556666666666554444444444333
No 393
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=91.84 E-value=4.1 Score=45.72 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhH
Q 002980 600 REKIEFYRSKMQELVLYKSRCDNRLN 625 (861)
Q Consensus 600 ree~e~LrsQlQEL~~~Ksr~e~~L~ 625 (861)
++.++.-+..+++|..+..++.+.|-
T Consensus 91 ~es~~e~q~e~~qL~~qnqkL~nqL~ 116 (401)
T PF06785_consen 91 RESVEERQQESEQLQSQNQKLKNQLF 116 (401)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33333444444444444444444443
No 394
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=91.82 E-value=0.048 Score=68.26 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 002980 690 DGLLQVRADRIQSDLEELLKALT 712 (861)
Q Consensus 690 n~~Lkera~~in~el~eL~~~L~ 712 (861)
-..|..+++.+..+++.|+.+|.
T Consensus 259 k~~L~~~l~~le~e~~~L~eqle 281 (859)
T PF01576_consen 259 KQALEKQLRQLEHELEQLREQLE 281 (859)
T ss_dssp -----------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHh
Confidence 33444455555555555555543
No 395
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=91.81 E-value=4.8 Score=46.62 Aligned_cols=146 Identities=14% Similarity=0.196 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 002980 589 VDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEK---YKQVAEIASKLTIEDAK 665 (861)
Q Consensus 589 la~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~---~kqv~elEsQL~~lEa~ 665 (861)
++.++.|+....++.+.|++=++.|+.+.... ... .+..+++.|..+-+.. .+.+..-+.+|+-+..+
T Consensus 145 ~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~--~~~-------~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e 215 (447)
T KOG2751|consen 145 LNKLDKEVEDAEDEVDTYKACLQRLEQQNQDV--SEE-------DLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKE 215 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc--chH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666677777666666544332 111 1122222222222222 23333344445555555
Q ss_pred HHHHHHHHHHHHHHHH--------HHhccCcchhhHHHHHHHHHHHHHHHHHHHH-HHhHhcCc--------ccccccee
Q 002980 666 FRELQERKMELHQAIV--------NMERGGSADGLLQVRADRIQSDLEELLKALT-ERCKKHGI--------DVKSHAVI 728 (861)
Q Consensus 666 L~d~Q~EL~eLqqeIq--------kLe~~~~~n~~Lkera~~in~el~eL~~~L~-e~~~~~g~--------~~~~~~~~ 728 (861)
++.++.++.+.+.+.- ++=+.+.+...|+-++.-.+..++.|.+--. .+|=+.-+ .+....+-
T Consensus 216 ~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ktNv~n~~F~I~~~G~fgtIN~FRLG~lp 295 (447)
T KOG2751|consen 216 LEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKTNVFNATFHIWHDGEFGTINNFRLGRLP 295 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhhhhhheeeEeecccccccccceecccc
Confidence 5555555555554443 3335666778888888888888888877432 23322111 23344566
Q ss_pred ecCCCCCCCcccccccchh
Q 002980 729 ELPFGWQPGIQEGAGVWDE 747 (861)
Q Consensus 729 e~p~gw~~~~~e~a~~w~e 747 (861)
+.|++|+ |=-|.|+.
T Consensus 296 ~~pVew~----EINAA~GQ 310 (447)
T KOG2751|consen 296 SVPVEWD----EINAAWGQ 310 (447)
T ss_pred CCCcCHH----HHHHHhhh
Confidence 7788886 44555654
No 396
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=91.74 E-value=17 Score=40.87 Aligned_cols=124 Identities=18% Similarity=0.231 Sum_probs=62.2
Q ss_pred hhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 002980 582 STTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKL-T 660 (861)
Q Consensus 582 ~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL-~ 660 (861)
+..+.++..++..+......++..+++++..|..-+.....+++... ..+..+++|..++....+.+.+-.-++ .
T Consensus 24 ~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~----~~k~KLE~LCRELQk~Nk~lkeE~~~~~~ 99 (309)
T PF09728_consen 24 LEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAI----LAKSKLESLCRELQKQNKKLKEESKRRAR 99 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666555555666667777777777777777766665332 345666666655555555554433333 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhccCcchhhHHHHHHHHHHHHHHHHH
Q 002980 661 IEDAKFRELQERKMELHQAIV-NMERGGSADGLLQVRADRIQSDLEELLK 709 (861)
Q Consensus 661 ~lEa~L~d~Q~EL~eLqqeIq-kLe~~~~~n~~Lkera~~in~el~eL~~ 709 (861)
..+..-.++..+.+..-..|+ +|++....+..+.+.-..+...+..|..
T Consensus 100 eee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~e 149 (309)
T PF09728_consen 100 EEEEKRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIE 149 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Confidence 223333333444433333443 4444444333333333333333333333
No 397
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=91.74 E-value=4.1 Score=45.22 Aligned_cols=54 Identities=11% Similarity=0.065 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--chhhHHHHHHHHHHHHHHHHHHH
Q 002980 658 KLTIEDAKFRELQERKMELHQAIVNMERGGS--ADGLLQVRADRIQSDLEELLKAL 711 (861)
Q Consensus 658 QL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~--~n~~Lkera~~in~el~eL~~~L 711 (861)
++..++..+..++.+++.++..+..+..+.. +...++.++.....++++++..|
T Consensus 146 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~a~~~l 201 (331)
T PRK03598 146 DLENARSSRDQAQATLKSAQDKLSQYREGNRPQDIAQAKASLAQAQAALAQAELNL 201 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555666666655554443322 22233334444444444444333
No 398
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=91.74 E-value=0.23 Score=33.15 Aligned_cols=27 Identities=33% Similarity=0.504 Sum_probs=24.3
Q ss_pred HHHHHHhhCCCCCCccCHHHHHHHHHh
Q 002980 9 FESFFRRADLDGDGRISGAEAVAFFQG 35 (861)
Q Consensus 9 y~~iF~~~D~DgDG~ISg~E~~~~f~~ 35 (861)
++.+|+.+|.+++|+|+..++..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 578999999999999999999998863
No 399
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=91.74 E-value=6.7 Score=41.11 Aligned_cols=102 Identities=13% Similarity=0.113 Sum_probs=57.8
Q ss_pred hhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 580 QDSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKL 659 (861)
Q Consensus 580 qE~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL 659 (861)
++...+|....+...+-.+ +....-.-.+|+.+|...+..+.+..++...+..++..-+++-.+....-.....++
T Consensus 81 ~d~~~AE~~Y~~F~~Qt~~----LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea 156 (192)
T PF11180_consen 81 QDEARAEAIYRDFAQQTAR----LADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEA 156 (192)
T ss_pred CChhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555444322 233333444566666666666666666666666666666655444444445555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002980 660 TIEDAKFRELQERKMELHQAIVNMER 685 (861)
Q Consensus 660 ~~lEa~L~d~Q~EL~eLqqeIqkLe~ 685 (861)
..++.+-...+.+|.+|+..|..|+.
T Consensus 157 ~aL~~e~~aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 157 QALEAERRAAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666665543
No 400
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=91.67 E-value=3.2 Score=36.61 Aligned_cols=61 Identities=20% Similarity=0.231 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-chhhHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 002980 658 KLTIEDAKFRELQERKMELHQAIVNMERGGS-ADGLLQVRADRIQSDLEELLKALTERCKKH 718 (861)
Q Consensus 658 QL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~-~n~~Lkera~~in~el~eL~~~L~e~~~~~ 718 (861)
++...+.++...+.++..|.+.-..|..... ....++++++.|+..-+.|...+.+|++++
T Consensus 42 ~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L 103 (105)
T PF00435_consen 42 KHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRWEALCELVEERRQKL 103 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4445555666666666666666666644333 567999999999999999999999998864
No 401
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=91.62 E-value=8.2 Score=49.92 Aligned_cols=65 Identities=9% Similarity=0.049 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccC--------------cchhhHHHHHHHHHHHHHHHHHHHHHH
Q 002980 650 KQVAEIASKLTIEDAKFRELQERKMELHQAIVN-MERGG--------------SADGLLQVRADRIQSDLEELLKALTER 714 (861)
Q Consensus 650 kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqk-Le~~~--------------~~n~~Lkera~~in~el~eL~~~L~e~ 714 (861)
+++..++.++..++..+..++.++..++..+.. |.+.. .+...|+++|+..+..+..+...|.++
T Consensus 724 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~f~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ 803 (1047)
T PRK10246 724 EQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTALQASVFDDQQAFLAALLDEETLTQLEQLKQNLENQRQQAQTLVTQT 803 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555555555542 22211 123345566666666666665555444
No 402
>PRK10698 phage shock protein PspA; Provisional
Probab=91.57 E-value=16 Score=39.17 Aligned_cols=31 Identities=16% Similarity=0.322 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 651 QVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (861)
Q Consensus 651 qv~elEsQL~~lEa~L~d~Q~EL~eLqqeIq 681 (861)
++..++.++...+..+..++..+.+|+..|.
T Consensus 100 ~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~ 130 (222)
T PRK10698 100 LIATLEHEVTLVDETLARMKKEIGELENKLS 130 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444
No 403
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=91.52 E-value=8.1 Score=44.93 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 002980 650 KQVAEIASKLTI-EDAKFRELQERKMELHQAI 680 (861)
Q Consensus 650 kqv~elEsQL~~-lEa~L~d~Q~EL~eLqqeI 680 (861)
.+++.++.+|.. ....|++.+.++..|.+.+
T Consensus 312 q~L~~l~~rL~~a~~~~L~~~~~~L~~l~~rL 343 (438)
T PRK00286 312 QRLDRLQQRLQRALERRLRLAKQRLERLSQRL 343 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444422 2444444444444444444
No 404
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=91.50 E-value=4.3 Score=38.01 Aligned_cols=61 Identities=25% Similarity=0.335 Sum_probs=29.7
Q ss_pred HHhhhhHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 619 RCDNRLNEITERALADRREAETLGKKYEEK---YKQVAEIASKLTIEDAKFRELQERKMELHQA 679 (861)
Q Consensus 619 r~e~~L~ei~e~~s~~kreIesLr~k~ee~---~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqe 679 (861)
..-.+-.++......+++.++.|..+|++. .++|+.|+.+|..+|..-..+-+=..+|+..
T Consensus 32 ~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k 95 (99)
T PF10046_consen 32 ATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESK 95 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444445555555555555442 2455555555555555554444444444433
No 405
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=91.46 E-value=5.1 Score=36.83 Aligned_cols=85 Identities=12% Similarity=0.195 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 594 KVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALA-----------DRREAETLGKKYEEKYKQVAEIASKLTIE 662 (861)
Q Consensus 594 ~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~-----------~kreIesLr~k~ee~~kqv~elEsQL~~l 662 (861)
+++.+++.++..+..+++.|...+.++..-++++..--.. +......+. +...++++.++..|..+
T Consensus 5 ~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~---~~L~~~~~~~~~~i~~l 81 (106)
T PF01920_consen 5 NKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAI---EELEERIEKLEKEIKKL 81 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3444455555666666666666666555555554411100 011111111 22224445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002980 663 DAKFRELQERKMELHQAIV 681 (861)
Q Consensus 663 Ea~L~d~Q~EL~eLqqeIq 681 (861)
+..++.+..++.+++..+.
T Consensus 82 ~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 82 EKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554
No 406
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=91.41 E-value=13 Score=40.51 Aligned_cols=50 Identities=10% Similarity=0.103 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHhccCc-chhhHHHHHHHHH-HHHHHHHHHHHHHhH
Q 002980 667 RELQERKMELHQAIVNMERGGS-ADGLLQVRADRIQ-SDLEELLKALTERCK 716 (861)
Q Consensus 667 ~d~Q~EL~eLqqeIqkLe~~~~-~n~~Lkera~~in-~el~eL~~~L~e~~~ 716 (861)
.-+++++..|+.+|++++...+ =|+.+++++...+ .+..+|+.+|.+.|+
T Consensus 170 ~~rre~~~kLe~~ie~~~~~ve~f~~~~~~E~~~Fe~~K~~e~k~~l~~~Ad 221 (240)
T cd07667 170 ALRKEERPKVPTDVEKCQDRVECFNADLKADMERWQNNKRQDFRQLLMGMAD 221 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555554444433 3333333333332 334455555555444
No 407
>PF13166 AAA_13: AAA domain
Probab=91.40 E-value=5.8 Score=48.56 Aligned_cols=30 Identities=20% Similarity=0.381 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHH----------HHHHHHhHhcCcc
Q 002980 692 LLQVRADRIQSDLEELL----------KALTERCKKHGID 721 (861)
Q Consensus 692 ~Lkera~~in~el~eL~----------~~L~e~~~~~g~~ 721 (861)
.++..++.++.++.+|+ ..+|+.++.+|..
T Consensus 435 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~g~~ 474 (712)
T PF13166_consen 435 KAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRLGFS 474 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence 44444444444444444 4557788888743
No 408
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=91.39 E-value=3.8 Score=45.28 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHHHHH
Q 002980 692 LLQVRADRIQSDLEELL 708 (861)
Q Consensus 692 ~Lkera~~in~el~eL~ 708 (861)
-.++++..++.+|.+|+
T Consensus 281 ~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 281 GFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp T-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 34555555555555553
No 409
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.38 E-value=11 Score=43.90 Aligned_cols=35 Identities=20% Similarity=0.137 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCccccccce
Q 002980 693 LQVRADRIQSDLEELLKALTERCKKHGIDVKSHAV 727 (861)
Q Consensus 693 Lkera~~in~el~eL~~~L~e~~~~~g~~~~~~~~ 727 (861)
.+++-..++.-+++|.++|.-....-++..+++.-
T Consensus 365 fq~ekeatqELieelrkelehlr~~kl~~a~p~rg 399 (502)
T KOG0982|consen 365 FQEEKEATQELIEELRKELEHLRRRKLVLANPVRG 399 (502)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 44444555556666666665554455555555543
No 410
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=91.37 E-value=1.9 Score=38.54 Aligned_cols=63 Identities=21% Similarity=0.313 Sum_probs=36.0
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 621 DNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNM 683 (861)
Q Consensus 621 e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkL 683 (861)
+..|.+.+++|+.+..+-+.|.++.-.....|+.+..++...|..+..++.++..+..++..|
T Consensus 4 ~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l 66 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESL 66 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555566666666666666666555555555544
No 411
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=91.35 E-value=4.6 Score=52.11 Aligned_cols=54 Identities=6% Similarity=0.047 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 002980 663 DAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCK 716 (861)
Q Consensus 663 Ea~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L~e~~~ 716 (861)
++.+..++.++..++..+..++.....+.....++..+...+.++...+..|..
T Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 881 (1047)
T PRK10246 828 QQELAQLAQQLRENTTRQGEIRQQLKQDADNRQQQQALMQQIAQATQQVEDWGY 881 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444445555555555555566555554444433
No 412
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=91.35 E-value=3.3 Score=49.70 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHhcCccc
Q 002980 691 GLLQVRADRIQSDLEELLKALTERCKKHGIDV 722 (861)
Q Consensus 691 ~~Lkera~~in~el~eL~~~L~e~~~~~g~~~ 722 (861)
..|+.++.+-...+++|+..|++.-|.+++..
T Consensus 484 ~~L~~~L~e~~~~ve~L~~~l~~l~k~~~lE~ 515 (652)
T COG2433 484 ERLEKELEEKKKRVEELERKLAELRKMRKLEL 515 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34455555556667777777777665555443
No 413
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=91.34 E-value=9.7 Score=46.90 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=11.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH
Q 002980 689 ADGLLQVRADRIQSDLEELLKAL 711 (861)
Q Consensus 689 ~n~~Lkera~~in~el~eL~~~L 711 (861)
....||.++...+..+++++.++
T Consensus 567 ~~~~Lq~~~ek~~~~le~i~~~~ 589 (698)
T KOG0978|consen 567 SLEDLQIELEKSEAKLEQIQEQY 589 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444
No 414
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=91.30 E-value=1.7 Score=49.07 Aligned_cols=10 Identities=20% Similarity=0.129 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 002980 696 RADRIQSDLE 705 (861)
Q Consensus 696 ra~~in~el~ 705 (861)
+...++.+.+
T Consensus 279 ~~~~L~re~~ 288 (362)
T TIGR01010 279 DYQRLVLQNE 288 (362)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 415
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=91.26 E-value=8.2 Score=42.65 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002980 696 RADRIQSDLEELLKALTE 713 (861)
Q Consensus 696 ra~~in~el~eL~~~L~e 713 (861)
++...+.++..++.+|..
T Consensus 180 ~~~~~~~~~~~~~~~l~~ 197 (327)
T TIGR02971 180 DVDLAQAEVKSALEAVQQ 197 (327)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555555544
No 416
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=91.19 E-value=0.11 Score=59.74 Aligned_cols=56 Identities=16% Similarity=0.245 Sum_probs=49.5
Q ss_pred hCCCCCCccCHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHH
Q 002980 16 ADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVT 71 (861)
Q Consensus 16 ~D~DgDG~ISg~E~~~~f~~SgLp~~~L~qIW~laD~d~DG~Ls~~EF~~Al~Li~ 71 (861)
+|.+.+|.||-.||.=++.--..|....+-.|.++|.||||.|+++||...+.||.
T Consensus 208 ~~lg~~GLIsfSdYiFLlTlLS~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~ 263 (489)
T KOG2643|consen 208 YKLGESGLISFSDYIFLLTLLSIPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIR 263 (489)
T ss_pred EEcCCCCeeeHHHHHHHHHHHccCcccceeeeeeeecCCCCcccHHHHHHHHHHHH
Confidence 35668999999999877777788999999999999999999999999999887774
No 417
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=91.16 E-value=11 Score=44.70 Aligned_cols=52 Identities=10% Similarity=0.020 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhccCcchhhHHHHHHHHHHHHHHHHHHH
Q 002980 660 TIEDAKFRELQERKMELHQAIV-NMERGGSADGLLQVRADRIQSDLEELLKAL 711 (861)
Q Consensus 660 ~~lEa~L~d~Q~EL~eLqqeIq-kLe~~~~~n~~Lkera~~in~el~eL~~~L 711 (861)
.=+.+.|..-+.++++++.+-. .-.....+...|++.-.+|..+...|.++|
T Consensus 143 ~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~AL 195 (475)
T PRK10361 143 SPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRAL 195 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555555555443322 111122234444444455555555555555
No 418
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.13 E-value=4.8 Score=41.87 Aligned_cols=99 Identities=13% Similarity=0.179 Sum_probs=59.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcch-----hhHHHHHHH
Q 002980 625 NEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSAD-----GLLQVRADR 699 (861)
Q Consensus 625 ~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~~n-----~~Lkera~~ 699 (861)
.++.++++..++.+.+|+..++.........|..-..++..|+.++.+++.|+.++.++++...+. +.-|+-+..
T Consensus 84 qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~~~K~~~ea 163 (203)
T KOG3433|consen 84 QELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVHLEKTMAEA 163 (203)
T ss_pred HHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 333455555666667777777776677677777766777777878778888888888665533322 222222333
Q ss_pred HHHHHHHHHHHHHHHhHhcCcccc
Q 002980 700 IQSDLEELLKALTERCKKHGIDVK 723 (861)
Q Consensus 700 in~el~eL~~~L~e~~~~~g~~~~ 723 (861)
.|.=++.+.--..=.|+++|++..
T Consensus 164 anrwtDnI~il~dy~~rkf~~e~n 187 (203)
T KOG3433|consen 164 ANRWTDNIFILIDYLYRKFGLEPN 187 (203)
T ss_pred HhhhhhhHHHHHHHHHHhcCCCHH
Confidence 333344444333334588888754
No 419
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=91.11 E-value=14 Score=35.26 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 640 TLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (861)
Q Consensus 640 sLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIq 681 (861)
...++++++.+.....+..|..+.+.|..++.++..|+..|.
T Consensus 64 rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~ 105 (126)
T PF13863_consen 64 RAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLE 105 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555555555555555544
No 420
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=91.10 E-value=0.064 Score=65.93 Aligned_cols=8 Identities=13% Similarity=0.721 Sum_probs=0.0
Q ss_pred hhhhcccC
Q 002980 748 DWDKFEDA 755 (861)
Q Consensus 748 ~wd~~~d~ 755 (861)
.|..|...
T Consensus 323 sW~sl~~~ 330 (722)
T PF05557_consen 323 SWESLLQD 330 (722)
T ss_dssp --------
T ss_pred HHHHHHhc
Confidence 47776654
No 421
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=91.04 E-value=20 Score=36.68 Aligned_cols=21 Identities=10% Similarity=0.169 Sum_probs=13.0
Q ss_pred chhhHHHHHHHHHHHHHHHHH
Q 002980 689 ADGLLQVRADRIQSDLEELLK 709 (861)
Q Consensus 689 ~n~~Lkera~~in~el~eL~~ 709 (861)
....|.-.+..+...++.++.
T Consensus 134 vl~yL~~dl~~v~~~~e~~~~ 154 (159)
T PF05384_consen 134 VLNYLSGDLQQVSEQIEDAQQ 154 (159)
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 344666666666666666654
No 422
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=91.02 E-value=0.065 Score=67.12 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 002980 692 LLQVRADRIQSDLEELLKAL 711 (861)
Q Consensus 692 ~Lkera~~in~el~eL~~~L 711 (861)
.|+.++..+|.+|..+++.+
T Consensus 289 ~l~~qlsk~~~El~~~k~K~ 308 (859)
T PF01576_consen 289 ELERQLSKLNAELEQWKKKY 308 (859)
T ss_dssp --------------------
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 34444444455554444444
No 423
>PF15294 Leu_zip: Leucine zipper
Probab=90.97 E-value=2.6 Score=46.50 Aligned_cols=73 Identities=11% Similarity=0.115 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHH---------HHHHHHHHHHHHHH
Q 002980 590 DEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYE---------EKYKQVAEIASKLT 660 (861)
Q Consensus 590 a~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~e---------e~~kqv~elEsQL~ 660 (861)
+-|..+|.++++|-+.|+.++..++..-..+..+-. ++++.|..|+.... -...++..+|.+++
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~-------kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a 200 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKS-------KLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMA 200 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhccccccccccchhhHHHHHH
Confidence 778889999999999999999999875555444433 34555555554111 13346667777776
Q ss_pred HHHHHHHHH
Q 002980 661 IEDAKFREL 669 (861)
Q Consensus 661 ~lEa~L~d~ 669 (861)
.+..+|...
T Consensus 201 ~lK~e~ek~ 209 (278)
T PF15294_consen 201 ALKSELEKA 209 (278)
T ss_pred HHHHHHHHH
Confidence 665444443
No 424
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=90.96 E-value=13 Score=46.07 Aligned_cols=14 Identities=0% Similarity=0.100 Sum_probs=5.4
Q ss_pred hHHhhhHHHHHHHH
Q 002980 583 TTAGKKVDEREKVI 596 (861)
Q Consensus 583 ~elekela~Le~qi 596 (861)
..|.+.|..|+.++
T Consensus 397 aqLrRrLrilnqql 410 (861)
T PF15254_consen 397 AQLRRRLRILNQQL 410 (861)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444443333
No 425
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=90.90 E-value=11 Score=46.06 Aligned_cols=78 Identities=24% Similarity=0.345 Sum_probs=56.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-chhhHHHHHHHHHH----HHHHH
Q 002980 633 ADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGS-ADGLLQVRADRIQS----DLEEL 707 (861)
Q Consensus 633 ~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~-~n~~Lkera~~in~----el~eL 707 (861)
.+......|+.++.+..+.+++++.+|..++..+.....+-..|+.++. ..+. -...|+++...+-+ .|.++
T Consensus 518 ~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~---~QQ~~y~~alqekvsevEsrl~E~L~~~ 594 (739)
T PF07111_consen 518 QLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELT---QQQEVYERALQEKVSEVESRLREQLSEM 594 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555677777777888889999999999999988888888888887 2232 34466666655443 45677
Q ss_pred HHHHHH
Q 002980 708 LKALTE 713 (861)
Q Consensus 708 ~~~L~e 713 (861)
.+.|||
T Consensus 595 E~rLNe 600 (739)
T PF07111_consen 595 EKRLNE 600 (739)
T ss_pred HHHHHH
Confidence 778877
No 426
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=90.87 E-value=9.4 Score=46.72 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhHhcCccccccceeecCC
Q 002980 671 ERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGIDVKSHAVIELPF 732 (861)
Q Consensus 671 ~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L~e~~~~~g~~~~~~~~~e~p~ 732 (861)
.|..+|.+.++.|+++.. .|+--+.-+|..+..|..-|.=+=+.++=++-++.++|=.|
T Consensus 242 ~Er~~L~~tVq~L~edR~---~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d~Le~e~ 300 (739)
T PF07111_consen 242 PEREELLETVQHLQEDRD---ALQATAELLQVRVQSLTDILTLQEEELCRKVQPSDPLEPEF 300 (739)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchh
Confidence 455666666666654433 33333333344444433333222233333455555555444
No 427
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=90.85 E-value=3.6 Score=47.22 Aligned_cols=49 Identities=12% Similarity=0.262 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHH
Q 002980 657 SKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKAL 711 (861)
Q Consensus 657 sQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L 711 (861)
..|..+|....+++..+...++.|.++++. +++.+..|+..+..|...+
T Consensus 336 ~~l~~le~~q~~l~~~l~~~~~~L~~ve~~------~~~N~~~i~~n~~~le~Ri 384 (388)
T PF04912_consen 336 QTLSELESQQSDLQSQLKKWEELLNKVEEK------FKENMETIEKNVKKLEERI 384 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555444 4444444554444444433
No 428
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=90.85 E-value=4.8 Score=50.33 Aligned_cols=21 Identities=5% Similarity=0.150 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002980 661 IEDAKFRELQERKMELHQAIV 681 (861)
Q Consensus 661 ~lEa~L~d~Q~EL~eLqqeIq 681 (861)
.++..+++++.+..++-.++.
T Consensus 569 ea~~~~~~a~~~~~~~i~~lk 589 (771)
T TIGR01069 569 EAQEALKALKKEVESIIRELK 589 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554
No 429
>PTZ00464 SNF-7-like protein; Provisional
Probab=90.82 E-value=9 Score=40.79 Aligned_cols=31 Identities=10% Similarity=0.133 Sum_probs=15.2
Q ss_pred hHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 583 TTAGKKVDEREKVILDSREKIEFYRSKMQEL 613 (861)
Q Consensus 583 ~elekela~Le~qi~~sree~e~LrsQlQEL 613 (861)
..+++.+..++.+|.++..++..++.++...
T Consensus 21 ~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~ 51 (211)
T PTZ00464 21 KRIGGRSEVVDARINKIDAELMKLKEQIQRT 51 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555544444445555555443
No 430
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.78 E-value=5.5 Score=47.33 Aligned_cols=50 Identities=12% Similarity=0.194 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 002980 663 DAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTE 713 (861)
Q Consensus 663 Ea~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L~e 713 (861)
|..+.+-+ ++.+.++.|..||.-.++....+.|...+++.++|-...|..
T Consensus 504 ed~~~d~s-qhlq~eel~~alektkQel~~tkarl~stqqslaEke~HL~n 553 (654)
T KOG4809|consen 504 EDSMADNS-QHLQIEELMNALEKTKQELDATKARLASTQQSLAEKEAHLAN 553 (654)
T ss_pred HhhhcchH-HHHHHHHHHHHHHHHhhChhhhhhHHHHHHHHHHHHHHHHHH
Confidence 44444444 444588888899999999999999999999999987777743
No 431
>PRK10869 recombination and repair protein; Provisional
Probab=90.76 E-value=3.1 Score=50.08 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhHhcCcc
Q 002980 704 LEELLKALTERCKKHGID 721 (861)
Q Consensus 704 l~eL~~~L~e~~~~~g~~ 721 (861)
..+|.+.+.+..+.+|+.
T Consensus 372 A~~l~~~v~~~L~~L~m~ 389 (553)
T PRK10869 372 AKELAQLITESMHELSMP 389 (553)
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 456777777777777774
No 432
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=90.72 E-value=5.9 Score=40.41 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHH
Q 002980 603 IEFYRSKMQELVLYK 617 (861)
Q Consensus 603 ~e~LrsQlQEL~~~K 617 (861)
++.|+...+.|+.++
T Consensus 52 ~~~L~~d~e~L~~q~ 66 (158)
T PF09744_consen 52 LELLREDNEQLETQY 66 (158)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555443
No 433
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=90.70 E-value=6.4 Score=40.76 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 002980 700 IQSDLEELLKALTERC 715 (861)
Q Consensus 700 in~el~eL~~~L~e~~ 715 (861)
|.+.=++|+-+|-|++
T Consensus 155 ~~~~~~~~~~~~~~~~ 170 (189)
T TIGR02132 155 IKTQGEQLQAQLLEKQ 170 (189)
T ss_pred HhhhHHHHHHHHHHHH
Confidence 3333444444444433
No 434
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=90.68 E-value=7.8 Score=44.70 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=20.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Q 002980 689 ADGLLQVRADRIQSDLEELLKALT 712 (861)
Q Consensus 689 ~n~~Lkera~~in~el~eL~~~L~ 712 (861)
+...++.++...+.++++++..|.
T Consensus 228 ~~~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 228 ELETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888899999999999999885
No 435
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=90.56 E-value=23 Score=38.58 Aligned_cols=100 Identities=10% Similarity=0.069 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 002980 604 EFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQV-AEIASKLTIEDAKFRELQERKMELHQAIV- 681 (861)
Q Consensus 604 e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv-~elEsQL~~lEa~L~d~Q~EL~eLqqeIq- 681 (861)
..|-.+++.+..-..+....|+... .-+....+-+++..+.. ...-..|...+.|...+++ +-.+++.+|
T Consensus 89 ~e~~~~f~~ws~lE~~l~~~L~~~a-------~~~~~~s~~l~~l~~~~~~~yl~~Lke~~~Y~~slk~-vlK~RdqkQ~ 160 (240)
T cd07667 89 REYGPVYSTWSGLEGELAEPLEGVS-------ACIGNCSTALEELTEDMTEDFLPVLREYILYSESMKN-VLKKRDQVQA 160 (240)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3444555555444344444444333 33333333333333444 2344555666666555555 444444444
Q ss_pred HHhccCcchhhHHHHHHHHHHHHHHHHHHH
Q 002980 682 NMERGGSADGLLQVRADRIQSDLEELLKAL 711 (861)
Q Consensus 682 kLe~~~~~n~~Lkera~~in~el~eL~~~L 711 (861)
..|+..+.+...++|++.+..++++++...
T Consensus 161 d~E~l~E~l~~rre~~~kLe~~ie~~~~~v 190 (240)
T cd07667 161 EYEAKLEAVALRKEERPKVPTDVEKCQDRV 190 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333457778888888888887755
No 436
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=90.55 E-value=9 Score=41.58 Aligned_cols=62 Identities=16% Similarity=0.246 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhHh
Q 002980 653 AEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKK 717 (861)
Q Consensus 653 ~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L~e~~~~ 717 (861)
..|+.+..+.+.+-..+..++.++...|..|+ .+.......+..++.++.+.+..+.+-+.+
T Consensus 64 ~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~---ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~ 125 (246)
T PF00769_consen 64 QRLEEEAEMQEEEKEQLEQELREAEAEIARLE---EESERKEEEAEELQEELEEAREDEEEAKEE 125 (246)
T ss_dssp HHHHH------------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555555442 233445556666667777777666664333
No 437
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=90.52 E-value=6.5 Score=48.45 Aligned_cols=49 Identities=16% Similarity=0.115 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 635 RREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNM 683 (861)
Q Consensus 635 kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkL 683 (861)
..+...|+.++++-...++.+.-+|...|.+-.-+...|.+-.+||..|
T Consensus 493 d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL 541 (861)
T PF15254_consen 493 DIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERL 541 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHH
Confidence 3444456666666666666666666666666666666666666666644
No 438
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=90.51 E-value=9.8 Score=35.48 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 002980 588 KVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLN 625 (861)
Q Consensus 588 ela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ 625 (861)
+|..++....+..+.+.....++..++..+.++..+..
T Consensus 4 EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~ 41 (96)
T PF08647_consen 4 ELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKA 41 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555555555555554444444
No 439
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=90.48 E-value=2.1 Score=46.50 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHH
Q 002980 650 KQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQS 702 (861)
Q Consensus 650 kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~ 702 (861)
+|=+-...+...+|++++..++++..|+.|+.+| ++.|-.|=|++|=+|+
T Consensus 86 sQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L---~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 86 SQRDRFRQRNAELEEELRKQQQTISSLRREVESL---RADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhh
Confidence 7777888888888999999999999999999866 5667778788776654
No 440
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=90.39 E-value=1.1 Score=45.51 Aligned_cols=49 Identities=24% Similarity=0.255 Sum_probs=23.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 002980 633 ADRREAETLGKKYEEKYKQVAEIASKLTIEDAKF--RELQERKMELHQAIV 681 (861)
Q Consensus 633 ~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L--~d~Q~EL~eLqqeIq 681 (861)
++..+|..|+.++.+..++++.++.+|+.+...+ .+++.++.+|++++.
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~ 126 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIE 126 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3444455555444444455555555554443333 344444444444444
No 441
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=90.36 E-value=8.9 Score=42.51 Aligned_cols=113 Identities=14% Similarity=0.196 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 599 SREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQ 678 (861)
Q Consensus 599 sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqq 678 (861)
+|.....-|..++++..-+...++.+.++.-....+-. .+.+.+|.-...-+.|..||+-+=..++.++.++.+|+.
T Consensus 218 ~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~---eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e 294 (384)
T KOG0972|consen 218 LKQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHK---EITKALEKIASREKSLNNQLASLMQKFRRATDTLSELRE 294 (384)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445677777888877777777766654432222222 222222222233345556666666666666666666666
Q ss_pred HHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhHh
Q 002980 679 AIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKK 717 (861)
Q Consensus 679 eIqkLe~~~~~n~~Lkera~~in~el~eL~~~L~e~~~~ 717 (861)
..+++..+.. .--+.++.+-.+++.++....||..+
T Consensus 295 ~y~q~~~gv~---~rT~~L~eVm~e~E~~KqemEe~G~~ 330 (384)
T KOG0972|consen 295 KYKQASVGVS---SRTETLDEVMDEIEQLKQEMEEQGAK 330 (384)
T ss_pred HHHHhcccHH---HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6664433333 12223334444555555555555443
No 442
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=90.34 E-value=3.1 Score=40.62 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=20.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH
Q 002980 689 ADGLLQVRADRIQSDLEELLKALTER 714 (861)
Q Consensus 689 ~n~~Lkera~~in~el~eL~~~L~e~ 714 (861)
+...|..+++.|.+.+++||+.|..+
T Consensus 96 ~i~~les~~e~I~~~m~~LK~~LYaK 121 (131)
T KOG1760|consen 96 EIEELESELESISARMDELKKVLYAK 121 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466778888999999999998764
No 443
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=90.33 E-value=18 Score=37.90 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=12.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH
Q 002980 689 ADGLLQVRADRIQSDLEELLKALTER 714 (861)
Q Consensus 689 ~n~~Lkera~~in~el~eL~~~L~e~ 714 (861)
+...|+.=-..+..+...+.+...+.
T Consensus 152 k~~Ll~~le~e~~~e~a~~ir~~eee 177 (201)
T PF12072_consen 152 KEILLEKLEEEARREAAALIRRIEEE 177 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555443
No 444
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=90.24 E-value=10 Score=38.06 Aligned_cols=35 Identities=20% Similarity=0.159 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 002980 653 AEIASKLTIEDAKFRELQERKMELHQAIVNMERGG 687 (861)
Q Consensus 653 ~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~ 687 (861)
--+|..+...+..++.+|+-+..++..|++||.++
T Consensus 93 ~~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i 127 (146)
T PF08702_consen 93 YILETKIINQPSNIRVLQNILRSNRQKIQRLEQDI 127 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666667777777777777777776665544
No 445
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=90.18 E-value=12 Score=34.37 Aligned_cols=35 Identities=6% Similarity=0.243 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 638 AETLGKKYEEKYKQVAEIASKLTIEDAKFRELQER 672 (861)
Q Consensus 638 IesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~E 672 (861)
+..|...|......+..++.++..+...|..+..+
T Consensus 54 ~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~ 88 (123)
T PF02050_consen 54 ISALEQAIQQQQQELERLEQEVEQAREELQEARRE 88 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444443333333333
No 446
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=90.17 E-value=10 Score=45.50 Aligned_cols=90 Identities=16% Similarity=0.237 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhccCcchhhHHHHHHHHHHHHHHHHHHH
Q 002980 636 REAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV----NMERGGSADGLLQVRADRIQSDLEELLKAL 711 (861)
Q Consensus 636 reIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIq----kLe~~~~~n~~Lkera~~in~el~eL~~~L 711 (861)
.+...+..+|+..++|+++-..++..+......++.++.+-.+-+. .++..+.+...+|+.......+..++.++|
T Consensus 414 ~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al 493 (607)
T KOG0240|consen 414 EEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLTAL 493 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666666666666666655555555444333332 444444566666776666667777888888
Q ss_pred HHHhHhcCcccccc
Q 002980 712 TERCKKHGIDVKSH 725 (861)
Q Consensus 712 ~e~~~~~g~~~~~~ 725 (861)
+|.|..|+.+....
T Consensus 494 ~el~~~~~~~~~~~ 507 (607)
T KOG0240|consen 494 EELAVNYDQKSEEK 507 (607)
T ss_pred HHHHHhhhHHHHHH
Confidence 88888888765543
No 447
>PF15456 Uds1: Up-regulated During Septation
Probab=90.14 E-value=4.5 Score=39.69 Aligned_cols=87 Identities=18% Similarity=0.297 Sum_probs=46.6
Q ss_pred hhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-----------HHHHHhHHHHHHHHHHHHHHH
Q 002980 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEIT-----------ERALADRREAETLGKKYEEKY 649 (861)
Q Consensus 581 E~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~-----------e~~s~~kreIesLr~k~ee~~ 649 (861)
|+.++.+++.-|++.| ++++.++. |+.+-.++-..|..+. +...+...++..+.
T Consensus 23 EVe~LKkEl~~L~~R~-------~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~------- 87 (124)
T PF15456_consen 23 EVEELKKELRSLDSRL-------EYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESD------- 87 (124)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHH-------
Confidence 5666666666666665 77777776 5555555555554431 11122233333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 650 KQVAEIASKLTIEDAKFRELQERKMELHQAIVN 682 (861)
Q Consensus 650 kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqk 682 (861)
+.|+++..+|-.+|..+.+++.+|-+=..++-.
T Consensus 88 rk~ee~~~eL~~le~R~~~~~~rLLeH~AavL~ 120 (124)
T PF15456_consen 88 RKCEELAQELWKLENRLAEVRQRLLEHTAAVLQ 120 (124)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555566666666666555555443
No 448
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=90.07 E-value=15 Score=39.15 Aligned_cols=50 Identities=14% Similarity=0.202 Sum_probs=28.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 614 VLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIED 663 (861)
Q Consensus 614 ~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lE 663 (861)
...+.++......+.......-.+++..+++|+...++.+..+.++..++
T Consensus 104 ~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~ 153 (251)
T cd07653 104 RQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKAD 153 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444444444445555566677777777777777666666654443
No 449
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=90.05 E-value=4.8 Score=38.35 Aligned_cols=32 Identities=16% Similarity=0.376 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 650 KQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (861)
Q Consensus 650 kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIq 681 (861)
+.++.++.++..++..+..++.++.+|+..++
T Consensus 94 ~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 94 KRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555554
No 450
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=90.03 E-value=10 Score=36.47 Aligned_cols=36 Identities=17% Similarity=0.280 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002980 649 YKQVAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (861)
Q Consensus 649 ~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe 684 (861)
.|.++=|...|...|..+++++.+..+-+.++.+|.
T Consensus 75 ~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q 110 (120)
T KOG3478|consen 75 GKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQ 110 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777777777777777777777777777664
No 451
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=90.02 E-value=21 Score=42.42 Aligned_cols=93 Identities=14% Similarity=0.129 Sum_probs=45.3
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHH-------HHHHHHHHHHHH
Q 002980 584 TAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKK-------YEEKYKQVAEIA 656 (861)
Q Consensus 584 elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k-------~ee~~kqv~elE 656 (861)
...+++.+.+.++...+++++...+++..+.+--+++.+.|-+++.++.....+.+.+..- .++.....+++|
T Consensus 202 ~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~Ele 281 (596)
T KOG4360|consen 202 DCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELE 281 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3455666666666655555555555555555555555555555554444444444433211 112223334444
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002980 657 SKLTIEDAKFRELQERKMEL 676 (861)
Q Consensus 657 sQL~~lEa~L~d~Q~EL~eL 676 (861)
++-+..++.|...++||+.|
T Consensus 282 DkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 282 DKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44444555555555554444
No 452
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=90.02 E-value=14 Score=36.18 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 648 KYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNM 683 (861)
Q Consensus 648 ~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkL 683 (861)
..+.++.+|-+|.++|..-+++++++.+|+.+|+++
T Consensus 75 L~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 75 LEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335556666666777777777777777777777643
No 453
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=90.01 E-value=9.1 Score=47.34 Aligned_cols=65 Identities=17% Similarity=0.131 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 600 REKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAK 665 (861)
Q Consensus 600 ree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~ 665 (861)
+++++.++.++++|+.+.-+|...-.-++..+ +.+.+...+|.+.+++.|.+..+-.++..+|+.
T Consensus 967 daeLe~~~ael~eleqk~le~~eDea~aRh~k-efE~~mrdhrselEe~kKe~eaiineiee~eae 1031 (1424)
T KOG4572|consen 967 DAELEKEFAELIELEQKALECKEDEAFARHEK-EFEIEMRDHRSELEEKKKELEAIINEIEELEAE 1031 (1424)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666777777665555533322222211 234444445555555444444444444444433
No 454
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=89.99 E-value=19 Score=42.30 Aligned_cols=34 Identities=26% Similarity=0.248 Sum_probs=16.5
Q ss_pred HhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 002980 585 AGKKVDEREKVILDSRE---KIEFYRSKMQELVLYKS 618 (861)
Q Consensus 585 lekela~Le~qi~~sre---e~e~LrsQlQEL~~~Ks 618 (861)
|++++.+|...+.+.+- =+..|+.++++|..-|-
T Consensus 343 Le~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY 379 (527)
T PF15066_consen 343 LEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKY 379 (527)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHh
Confidence 45666666555543222 13455555555554443
No 455
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=89.98 E-value=3.5 Score=46.07 Aligned_cols=70 Identities=16% Similarity=0.158 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 612 ELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (861)
Q Consensus 612 EL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIq 681 (861)
+|.+-|+.+.-++.-++.++.+++..+..++++|.++.++++-+-..+..+..++..++.+|.+..+-|+
T Consensus 102 QLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~ 171 (302)
T PF09738_consen 102 QLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIE 171 (302)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666777777777778777777777777777778888888888877777776
No 456
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=89.91 E-value=10 Score=41.86 Aligned_cols=94 Identities=16% Similarity=0.191 Sum_probs=57.4
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 002980 584 TAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKL---- 659 (861)
Q Consensus 584 elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL---- 659 (861)
-|..+|.+-++.+.+-..|++.|+.||--+.+- =+.|=.-++. .+--++..|++|.+...=|+.+.+.|
T Consensus 72 HLkakLkes~~~l~dRetEI~eLksQL~RMrED------WIEEECHRVE-AQLALKEARkEIkQLkQvieTmrssL~ekD 144 (305)
T PF15290_consen 72 HLKAKLKESENRLHDRETEIDELKSQLARMRED------WIEEECHRVE-AQLALKEARKEIKQLKQVIETMRSSLAEKD 144 (305)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhchhh
Confidence 356666777777777666777888887766542 1221111111 12234556666655556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 002980 660 TIEDAKFRELQERKMELHQAIVNME 684 (861)
Q Consensus 660 ~~lEa~L~d~Q~EL~eLqqeIqkLe 684 (861)
.-...||.|+..+-..|+.=|+.||
T Consensus 145 kGiQKYFvDINiQN~KLEsLLqsME 169 (305)
T PF15290_consen 145 KGIQKYFVDINIQNKKLESLLQSME 169 (305)
T ss_pred hhHHHHHhhhhhhHhHHHHHHHHHH
Confidence 3447888888888888888777665
No 457
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=89.90 E-value=0.41 Score=48.00 Aligned_cols=53 Identities=30% Similarity=0.325 Sum_probs=44.6
Q ss_pred HHHhhCCCCCCccCHHHHHHHHHh---cCCCHHHHH----HHHHhhCCCCCCccCHHHHH
Q 002980 412 VFMEVDTDRDGRITGEQARNLFMS---WRLPREVLK----QVWDLSDQDSDSMLSLREFC 464 (861)
Q Consensus 412 iF~~lD~d~dG~Isg~ea~~~f~k---sgLp~e~L~----~IW~LaD~d~dG~LdkdEF~ 464 (861)
.|..+|-|+|++|..+.+...+.+ .+|+.+++. +|..-+|.|+||+|++.||-
T Consensus 113 AFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe 172 (189)
T KOG0038|consen 113 AFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFE 172 (189)
T ss_pred eeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHH
Confidence 588889999999999998887764 589988765 55667999999999999884
No 458
>PF13166 AAA_13: AAA domain
Probab=89.89 E-value=9.6 Score=46.70 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=9.9
Q ss_pred CCCCCccCHHHHHHHHHHH
Q 002980 452 QDSDSMLSLREFCFALYLM 470 (861)
Q Consensus 452 ~d~dG~LdkdEF~vAMhLI 470 (861)
.+....++.++..-.+-.+
T Consensus 175 ~~~~~~~~~~~l~~~~~~l 193 (712)
T PF13166_consen 175 PEESSLLSLEELEERIKIL 193 (712)
T ss_pred cccccccCHHHHHHHHHHh
Confidence 3445566666655444443
No 459
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=89.88 E-value=0.4 Score=54.77 Aligned_cols=48 Identities=21% Similarity=0.281 Sum_probs=0.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002980 608 SKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEI 655 (861)
Q Consensus 608 sQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~el 655 (861)
++++.+.....++..++.++...+.+++.+++.|++.+.+...++.++
T Consensus 84 K~~~~~~e~~ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~ 131 (370)
T PF02994_consen 84 KNLEVLKEEKEKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIENL 131 (370)
T ss_dssp ----------------------------------H-------------
T ss_pred hhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333344445555555566655555566677777765554444444333
No 460
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=89.88 E-value=11 Score=43.18 Aligned_cols=85 Identities=15% Similarity=0.184 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------hccCcchhhHHHHHHHHHHHHHHHHH---HHHHHhHhcCcccccccee
Q 002980 660 TIEDAKFRELQERKMELHQAIVNM--------ERGGSADGLLQVRADRIQSDLEELLK---ALTERCKKHGIDVKSHAVI 728 (861)
Q Consensus 660 ~~lEa~L~d~Q~EL~eLqqeIqkL--------e~~~~~n~~Lkera~~in~el~eL~~---~L~e~~~~~g~~~~~~~~~ 728 (861)
..++..|+++..++..|++.++.| |....++-.|..++..+--++-.|++ +..+|.+..|++-|.+.++
T Consensus 226 ~~~ks~i~ei~~sl~~l~d~lk~~~q~~~~~~enr~~e~m~l~k~~nslkp~l~~lr~~~d~y~~~l~~~~~~~k~l~~~ 305 (464)
T KOG4637|consen 226 DKLKSRIREIHDSLTRLEDDLKALIQALRSNSENRLCELMELDKAMNSLKPDLIQLRKIRDQYLVWLMIKGVRQKVLNLW 305 (464)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 344555566666666666555532 11112333466667766666666655 5678999999999987653
Q ss_pred ecCCCCCCCcccccccchhhhhhccc
Q 002980 729 ELPFGWQPGIQEGAGVWDEDWDKFED 754 (861)
Q Consensus 729 e~p~gw~~~~~e~a~~w~e~wd~~~d 754 (861)
= |+ --+|-++|--+-.
T Consensus 306 ------l-~~---~~~~t~~qy~l~e 321 (464)
T KOG4637|consen 306 ------L-GM---ENEWTDAQYLLCE 321 (464)
T ss_pred ------H-hh---hhcCCHHHHHHhc
Confidence 1 11 1257777766543
No 461
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.87 E-value=17 Score=43.46 Aligned_cols=131 Identities=12% Similarity=0.097 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHH------------------HHHHHHHH
Q 002980 589 VDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLG------------------KKYEEKYK 650 (861)
Q Consensus 589 la~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr------------------~k~ee~~k 650 (861)
+.++..++.+.-.++.+++++.+-+.+-.+++..|..++.++...+.+.++.|+ +++.-.-+
T Consensus 590 ~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq~~~~ 669 (741)
T KOG4460|consen 590 VKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKELQLIPD 669 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhHH
Confidence 333333333333344555555555555555556666665555555555444432 22222336
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhHhcC
Q 002980 651 QVAEIASKLTIEDAKFRELQERKMELHQAIVN--MERGGSADGLLQVRADRIQSDLEELLKALTERCKKHG 719 (861)
Q Consensus 651 qv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqk--Le~~~~~n~~Lkera~~in~el~eL~~~L~e~~~~~g 719 (861)
+++.+.+-|.++.+.++.-|.-+.+..++++| -+..-.+-..+++-+..+--+++++.++...--+++|
T Consensus 670 ~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~~~Q~~~iqsiL~~L~~~i~~~~k~VK~i~~~v~ 740 (741)
T KOG4460|consen 670 QLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYILSAYQRKCIQSILKELGEHIREMVKQVKDIRNHVN 740 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77788888888888888877778888888872 1112225567777777777788887777665444443
No 462
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=89.86 E-value=11 Score=47.17 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=28.4
Q ss_pred hhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 580 QDSTTAGKKVDEREKVILDSREKIEFYRSKMQELVL 615 (861)
Q Consensus 580 qE~~elekela~Le~qi~~sree~e~LrsQlQEL~~ 615 (861)
++..++.+++++|+-++..++++...|......|..
T Consensus 620 kd~~~~~q~~~EL~~q~~~L~ee~~af~~~v~~l~~ 655 (984)
T COG4717 620 KDLKKLMQKKAELTHQVARLREEQAAFEERVEGLLA 655 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 577788888999999999888887777776666544
No 463
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=89.71 E-value=16 Score=44.65 Aligned_cols=64 Identities=17% Similarity=0.115 Sum_probs=35.5
Q ss_pred hhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHH
Q 002980 582 STTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKY 645 (861)
Q Consensus 582 ~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ 645 (861)
+..|..++.+.++.+.++.-.+...+.+..+|+..+..+...|.+.+.+...+..+++.++..+
T Consensus 242 vs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~sl 305 (786)
T PF05483_consen 242 VSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSL 305 (786)
T ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Confidence 3344444455555555555556666666666666666666666655555554555555443333
No 464
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.68 E-value=12 Score=39.40 Aligned_cols=96 Identities=13% Similarity=0.147 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----CcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 002980 643 KKYEEKYKQVAEIA---SKLTIEDAKFRELQERKMELHQAIVNMERG-----GSADGLLQVRADRIQSDLEELLKALTER 714 (861)
Q Consensus 643 ~k~ee~~kqv~elE---sQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~-----~~~n~~Lkera~~in~el~eL~~~L~e~ 714 (861)
+.||.+...+..+. +|.+..-.-|++.+.-..-|+.....|+.. |...+.||.++..+=..-+||++.|.
T Consensus 73 K~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lg-- 150 (218)
T KOG1655|consen 73 KMYENQKDSLDQQSFNMEQANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLG-- 150 (218)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 34555444444433 334445556666666666666666655432 22444555555544444445444442
Q ss_pred hHhcCccccccceeecCCCCCCCcccccccchhhhhhcccCCCC
Q 002980 715 CKKHGIDVKSHAVIELPFGWQPGIQEGAGVWDEDWDKFEDAGFG 758 (861)
Q Consensus 715 ~~~~g~~~~~~~~~e~p~gw~~~~~e~a~~w~e~wd~~~d~~f~ 758 (861)
..||.- .| .-++-+-+-|.+.+|.|.
T Consensus 151 -r~y~~p---------------ei--de~dL~aELdaL~~E~d~ 176 (218)
T KOG1655|consen 151 -RNYNTP---------------DI--DEADLDAELDALGQELDM 176 (218)
T ss_pred -hccCCC---------------Cc--CHHHHHHHHHHHHhHhhc
Confidence 233321 12 123444457788777776
No 465
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=89.67 E-value=12 Score=39.34 Aligned_cols=70 Identities=10% Similarity=0.164 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 612 ELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (861)
Q Consensus 612 EL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIq 681 (861)
++..++..++.++++-+..+...++.+..-...++.....++.-+..|...+..|+..+..+.+++.++.
T Consensus 61 e~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~ 130 (201)
T PF12072_consen 61 EAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELE 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544433333333333333333333333333344444444444444433444444443
No 466
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=89.65 E-value=24 Score=40.59 Aligned_cols=73 Identities=15% Similarity=0.213 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-chhhHH---HHHHH----HHHHHHHHHHHHHHHhHhcCcc
Q 002980 650 KQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGS-ADGLLQ---VRADR----IQSDLEELLKALTERCKKHGID 721 (861)
Q Consensus 650 kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~-~n~~Lk---era~~----in~el~eL~~~L~e~~~~~g~~ 721 (861)
++.=++|-=|.+.|.+++=++.|+..|+.||+-+-.+++ .-..-| .++.. ..-+|+.|+++|.----.+|-+
T Consensus 505 kdayELEVLLRVKEsEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYtELSiaKakadcdIsrLKEqLkaAteALgEK 584 (593)
T KOG4807|consen 505 KDAYELEVLLRVKESEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELSIAKAKADCDISRLKEQLKAATEALGEK 584 (593)
T ss_pred cchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHhccc
Confidence 444567777788899999999999999999995545444 111111 12222 1246788888887766666655
Q ss_pred c
Q 002980 722 V 722 (861)
Q Consensus 722 ~ 722 (861)
.
T Consensus 585 s 585 (593)
T KOG4807|consen 585 S 585 (593)
T ss_pred C
Confidence 4
No 467
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=89.61 E-value=10 Score=43.81 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHH
Q 002980 609 KMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKL------------------------TIEDA 664 (861)
Q Consensus 609 QlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL------------------------~~lEa 664 (861)
.|++|-.-+-+.++.|.. +.+--+.+|=+++++...+.+-++.+| +....
T Consensus 180 ~leQLRre~V~lentlEQ------EqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~ 253 (552)
T KOG2129|consen 180 TLEQLRREAVQLENTLEQ------EQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKL 253 (552)
T ss_pred hHHHHHHHHHHHhhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHH
Confidence 345665555555555432 223345566667766666666666665 22244
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc-CcchhhHHHHHHHHHHHHHHHHHHHH------H-HhHhcCccccc
Q 002980 665 KFRELQERKMELHQAIVNMERG-GSADGLLQVRADRIQSDLEELLKALT------E-RCKKHGIDVKS 724 (861)
Q Consensus 665 ~L~d~Q~EL~eLqqeIqkLe~~-~~~n~~Lkera~~in~el~eL~~~L~------e-~~~~~g~~~~~ 724 (861)
.++.+|.|+..|+..+..-+.. +.+...+.++-+.+..+.+.|+..|. | .|+.+.-..++
T Consensus 254 hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEsess 321 (552)
T KOG2129|consen 254 HIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELERREALCRMLSESESS 321 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 5556688888888887733222 22445555666677778888877772 2 58877654443
No 468
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=89.59 E-value=2.5 Score=49.55 Aligned_cols=13 Identities=38% Similarity=0.629 Sum_probs=9.3
Q ss_pred ccccchhhhhhcc
Q 002980 741 GAGVWDEDWDKFE 753 (861)
Q Consensus 741 ~a~~w~e~wd~~~ 753 (861)
+...|.|.=|...
T Consensus 171 ~~~~Wv~P~D~~~ 183 (472)
T TIGR03752 171 GGVVWVEPQDALP 183 (472)
T ss_pred CceEeeccccccc
Confidence 5567888777664
No 469
>PRK10869 recombination and repair protein; Provisional
Probab=89.52 E-value=7.3 Score=46.93 Aligned_cols=63 Identities=14% Similarity=0.202 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 002980 651 QVAEIASKLTIEDA-------KFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTE 713 (861)
Q Consensus 651 qv~elEsQL~~lEa-------~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L~e 713 (861)
.++++|++|..+.. .+.++-....++++++..|+......+.|++++..+..++.++-..|.+
T Consensus 297 ~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~ 366 (553)
T PRK10869 297 RLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQ 366 (553)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666543311 3344445555666666666666666666666666666666666666665
No 470
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=89.50 E-value=1.3 Score=52.46 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 002980 692 LLQVRADRIQSDLEELLK 709 (861)
Q Consensus 692 ~Lkera~~in~el~eL~~ 709 (861)
.|++++..++.+|+.|..
T Consensus 156 ~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 156 ELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 344444444444444433
No 471
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=89.50 E-value=4.4 Score=37.95 Aligned_cols=67 Identities=18% Similarity=0.331 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 002980 650 KQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCK 716 (861)
Q Consensus 650 kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L~e~~~ 716 (861)
.++-++-.+...+..++..++.+.+.+..+|.++......-+.|+++++.+..++.+|.+++.+...
T Consensus 29 d~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~ 95 (108)
T PF02403_consen 29 DEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEE 95 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666677777888888888888888877666666677777777777777777777766443
No 472
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=89.48 E-value=14 Score=39.75 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=11.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q 002980 633 ADRREAETLGKKYEEKYKQVAEIA 656 (861)
Q Consensus 633 ~~kreIesLr~k~ee~~kqv~elE 656 (861)
..+++.+.|+.++++..++...-.
T Consensus 68 ~reK~~~~I~ssL~eTtkdf~~~~ 91 (230)
T PF03904_consen 68 IREKNLKEIKSSLEETTKDFIDKT 91 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555544443
No 473
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=89.47 E-value=5.3 Score=48.01 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhHhcCcc
Q 002980 704 LEELLKALTERCKKHGID 721 (861)
Q Consensus 704 l~eL~~~L~e~~~~~g~~ 721 (861)
..+|.+.+++.++.+|+.
T Consensus 377 a~~l~~~v~~~l~~L~m~ 394 (563)
T TIGR00634 377 AERLAKRVEQELKALAME 394 (563)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 456778888889988886
No 474
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=89.47 E-value=4.3 Score=38.03 Aligned_cols=65 Identities=25% Similarity=0.280 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 612 ELVLYKSRCDNRLNEITERALADRREAETLGK---KYEEKYKQVAEIASKLTIEDAKFRELQERKMEL 676 (861)
Q Consensus 612 EL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~---k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eL 676 (861)
+|...+.++..++++++.+.+.+..+|..+.+ ..++...+++++-.+|..+|..+..++.++..+
T Consensus 33 ~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 33 ELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443334444443333 233333444444444444444444444444433
No 475
>COG5283 Phage-related tail protein [Function unknown]
Probab=89.46 E-value=8.9 Score=49.38 Aligned_cols=103 Identities=15% Similarity=0.118 Sum_probs=63.0
Q ss_pred hhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLT 660 (861)
Q Consensus 581 E~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~ 660 (861)
-+.+-++....++.|....++-+..-..+|++|.+--.++-.-+.+++++..++.+.+...++.|.+..++...+|..+.
T Consensus 30 si~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tqae~~~~ 109 (1213)
T COG5283 30 SIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAENKLR 109 (1213)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666644444445555666777766666666666666666667778888888888777777777776654
Q ss_pred HH-------HHHHHHHHHHHHHHHHHHHHH
Q 002980 661 IE-------DAKFRELQERKMELHQAIVNM 683 (861)
Q Consensus 661 ~l-------Ea~L~d~Q~EL~eLqqeIqkL 683 (861)
.+ -..|.--|.+++.|+.+|..+
T Consensus 110 sas~q~~~a~~q~~~~~~~iq~~~~~is~t 139 (1213)
T COG5283 110 SLSGQFGVASEQLMLQQKEIQRLQYAISTL 139 (1213)
T ss_pred HHHhhhchhhHHHHHHHHHHHHHHHHHHhh
Confidence 33 334444455555555555533
No 476
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=89.36 E-value=16 Score=38.40 Aligned_cols=118 Identities=19% Similarity=0.243 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 597 LDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMEL 676 (861)
Q Consensus 597 ~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eL 676 (861)
.+.+...+.+-+.+.+|+. ..=+..-+..++.+ +=+|+..+.+.....+.++.++...++.+..+..++.+|
T Consensus 65 dd~~~~f~~~~~tl~~LE~----~GFnV~~l~~RL~k----LL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~L 136 (190)
T PF05266_consen 65 DDSRSSFESLMKTLSELEE----HGFNVKFLRSRLNK----LLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKEL 136 (190)
T ss_pred CCcHHHHHHHHHHHHHHHH----cCCccHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3455566677777777764 23333333333321 333444444444555666666665555555555555555
Q ss_pred HHHHHHHhccCcchhhHHHHHHHHHHHHHHHHH---HHHHHhHhcCcccccc
Q 002980 677 HQAIVNMERGGSADGLLQVRADRIQSDLEELLK---ALTERCKKHGIDVKSH 725 (861)
Q Consensus 677 qqeIqkLe~~~~~n~~Lkera~~in~el~eL~~---~L~e~~~~~g~~~~~~ 725 (861)
+..|.+| +.+...+++.......++..|+. .|++.|..+-++|..+
T Consensus 137 e~ki~el---~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 137 EMKILEL---QRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544 22223333333333455555543 4455666665555443
No 477
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=89.34 E-value=5.5 Score=43.06 Aligned_cols=138 Identities=14% Similarity=0.128 Sum_probs=0.0
Q ss_pred ccCCCcccccccchhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHH
Q 002980 567 QLDNGEYSADSKLQDSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYE 646 (861)
Q Consensus 567 ~l~~~~~~s~~~~qE~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~e 646 (861)
++..|++.-.....-|..|-.++..++--..++-.+++++.+|.+||+..-...+.++....--.-....++++.+
T Consensus 100 qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~~~g~~~~~~~D~eR~q---- 175 (254)
T KOG2196|consen 100 QVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLELQSGHTYLSRADVEREQ---- 175 (254)
T ss_pred HHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhHHHHH----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhccCc-chhhHHHHHHHHHHHHHHHHH
Q 002980 647 EKYKQVAEIASKLTIEDAKFRELQERKMEL---------HQAIVNMERGGS-ADGLLQVRADRIQSDLEELLK 709 (861)
Q Consensus 647 e~~kqv~elEsQL~~lEa~L~d~Q~EL~eL---------qqeIqkLe~~~~-~n~~Lkera~~in~el~eL~~ 709 (861)
-++-..+|-+||..+-..|.++=.+|+.. ..+|.|.....- .+.-|..+..++...+++++|
T Consensus 176 -ty~~a~nidsqLk~l~~dL~~ii~~lN~~~~~~d~t~~~~qi~Kilnah~~sLqwl~d~st~~e~k~d~i~K 247 (254)
T KOG2196|consen 176 -TYKMAENIDSQLKRLSEDLKQIIKSLNTMSKTVDKTDPIIQIEKILNAHMDSLQWLDDNSTQLEKKLDKIKK 247 (254)
T ss_pred -HHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccccCCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
No 478
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=89.31 E-value=5.2 Score=43.53 Aligned_cols=105 Identities=17% Similarity=0.239 Sum_probs=57.9
Q ss_pred chhhhHHhhhHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHH
Q 002980 579 LQDSTTAGKKVDEREKVIL------------DSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYE 646 (861)
Q Consensus 579 ~qE~~elekela~Le~qi~------------~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~e 646 (861)
+.++.+..++|+++.++|. .+-.+--.|...-+||-.+ -.+.+|.++..+.+=.+.--+.|+...+
T Consensus 183 K~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q--~s~Gria~Le~eLAmQKs~seElkssq~ 260 (330)
T KOG2991|consen 183 KGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQ--ASEGRIAELEIELAMQKSQSEELKSSQE 260 (330)
T ss_pred HHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhh--hhcccHHHHHHHHHHHHhhHHHHHHhHH
Confidence 4467777778888888776 1333334455555555433 2345555554444433333344555555
Q ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002980 647 EKYK-------QVAEIASKLTIEDAKFRELQERKMELHQAIVNMER 685 (861)
Q Consensus 647 e~~k-------qv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~ 685 (861)
+.++ +|+..++-|-++...|+.++.+++.|...++.+.+
T Consensus 261 eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sq 306 (330)
T KOG2991|consen 261 ELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQ 306 (330)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444 44444555566666666666666666666664433
No 479
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=89.31 E-value=0.26 Score=56.22 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 655 IASKLTIEDAKFRELQERKMELHQAIV 681 (861)
Q Consensus 655 lEsQL~~lEa~L~d~Q~EL~eLqqeIq 681 (861)
+.++|..+|..+.+++.++.++.+.++
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i~~~~~ 168 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEIEQAIK 168 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHH
Confidence 444555555555555555555555544
No 480
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=89.29 E-value=0.68 Score=54.96 Aligned_cols=80 Identities=18% Similarity=0.285 Sum_probs=71.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHH
Q 002980 391 PDNSQVPWPKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSW--RLPREVLKQVWDLSDQDSDSMLSLREFCFALY 468 (861)
Q Consensus 391 ~~~~~~~Wp~ISpedk~~Y~~iF~~lD~d~dG~Isg~ea~~~f~ks--gLp~e~L~~IW~LaD~d~dG~LdkdEF~vAMh 468 (861)
.....++. .++++|..+|..-|..+|.|+.|+++-+.+..+|.+- +.+.+.+.++..-+|.+-.|.....||...|-
T Consensus 578 ~~~~~~~i-~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s 656 (680)
T KOG0042|consen 578 TSQMSIPI-KLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMS 656 (680)
T ss_pred cccccccc-ccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHH
Confidence 34556777 8999999999999999999999999999999999954 79999999999999999999999999877766
Q ss_pred HHH
Q 002980 469 LME 471 (861)
Q Consensus 469 LI~ 471 (861)
-+.
T Consensus 657 ~~~ 659 (680)
T KOG0042|consen 657 AIK 659 (680)
T ss_pred HHh
Confidence 554
No 481
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=89.28 E-value=21 Score=38.90 Aligned_cols=79 Identities=23% Similarity=0.258 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHH
Q 002980 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYE-------------EKYKQVAEIASKLTIEDAKFREL 669 (861)
Q Consensus 603 ~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~e-------------e~~kqv~elEsQL~~lEa~L~d~ 669 (861)
++.+...+++|..-..+|...|+++.+......++-+.+|.+|- ...+++..++.-|..+...-..+
T Consensus 24 ~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~~~l~~~~~~L~~A~~sD~~~ 103 (296)
T PF13949_consen 24 IEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLRKELQKYREYLEQASESDSQL 103 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 57788888888888888888888888888888888888888882 34455555555554444444444
Q ss_pred HHHHHHHHHHHH
Q 002980 670 QERKMELHQAIV 681 (861)
Q Consensus 670 Q~EL~eLqqeIq 681 (861)
..++..-..-|.
T Consensus 104 ~~~~~~~~~~l~ 115 (296)
T PF13949_consen 104 RSKLESIEENLE 115 (296)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 482
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=89.25 E-value=15 Score=43.74 Aligned_cols=96 Identities=17% Similarity=0.141 Sum_probs=61.5
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHH
Q 002980 624 LNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSD 703 (861)
Q Consensus 624 L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~e 703 (861)
|++..+.+.....+|++|=..++.+++.-..++..+.++-.+|...+.....|..+|..+.+.-.-.+.=.--.+.++.+
T Consensus 276 ld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~e 355 (570)
T COG4477 276 LDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKE 355 (570)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHH
Confidence 34444555555666667666666777777788888888888999999999999999886655444222222233455666
Q ss_pred HHHHHHHHHHHhHhcC
Q 002980 704 LEELLKALTERCKKHG 719 (861)
Q Consensus 704 l~eL~~~L~e~~~~~g 719 (861)
|.+|...+.+-....+
T Consensus 356 L~el~~~~~~i~~~~~ 371 (570)
T COG4477 356 LKELESVLDEILENIE 371 (570)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6666666655544433
No 483
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=89.11 E-value=5.2 Score=46.75 Aligned_cols=109 Identities=14% Similarity=0.154 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 605 FYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVA-EIASKLTIEDAKFRELQERKMELHQAIVNM 683 (861)
Q Consensus 605 ~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~-elEsQL~~lEa~L~d~Q~EL~eLqqeIqkL 683 (861)
.||+++..+...-.+...++.....+...++..+..+++.+.++.+++- ....++..++...+.+..++..|+.++.++
T Consensus 289 ~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~ 368 (458)
T COG3206 289 DLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKL 368 (458)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444443333333334444444444556666666666666555443 233345555666666666666666666655
Q ss_pred hccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 002980 684 ERGGSADGLLQVRADRIQSDLEELLKALTE 713 (861)
Q Consensus 684 e~~~~~n~~Lkera~~in~el~eL~~~L~e 713 (861)
-+.+.+...|+.++...+..++.|-....|
T Consensus 369 ~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe 398 (458)
T COG3206 369 PKLQVQLRELEREAEAARSLYETLLQRYQE 398 (458)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556667777777777777777666655
No 484
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=89.06 E-value=25 Score=36.26 Aligned_cols=33 Identities=6% Similarity=0.265 Sum_probs=16.6
Q ss_pred hhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 582 STTAGKKVDEREKVILDSREKIEFYRSKMQELV 614 (861)
Q Consensus 582 ~~elekela~Le~qi~~sree~e~LrsQlQEL~ 614 (861)
+.++......+...+.+..++++.+.+.++.+.
T Consensus 5 ~~el~~~~~~~~~~~~~~~~~l~~l~~ai~~~~ 37 (204)
T PF04740_consen 5 VSELHSQAESTNSSLKELKEQLESLQKAINQFI 37 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555455555555555555544
No 485
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=89.06 E-value=29 Score=35.53 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCcchhhHHHHHHHHHHHHH
Q 002980 651 QVAEIASKLTIEDAKFRELQERKMELHQAIVNME----RGGSADGLLQVRADRIQSDLE 705 (861)
Q Consensus 651 qv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe----~~~~~n~~Lkera~~in~el~ 705 (861)
=++.++.++..+|.++..++..+.....+|.... ....+.....+||+.++..++
T Consensus 80 ~r~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~r~~e 138 (158)
T PF09486_consen 80 YRDVLEERVRAAEAELAALRQALRAAEDEIAATRRAIARNDARIDVCRERIDRLRRAAE 138 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555554221 123344455555555554443
No 486
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=89.00 E-value=4.9 Score=42.75 Aligned_cols=30 Identities=20% Similarity=0.418 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002980 655 IASKLTIEDAKFRELQERKMELHQAIVNME 684 (861)
Q Consensus 655 lEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe 684 (861)
...+|..+|....+.-.+.-+++.++.+||
T Consensus 173 ~~~~L~~Le~~W~~~v~kn~eie~a~~~Le 202 (221)
T PF05700_consen 173 AGEELRYLEQRWKELVSKNLEIEVACEELE 202 (221)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555443
No 487
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=88.96 E-value=13 Score=43.03 Aligned_cols=130 Identities=15% Similarity=0.230 Sum_probs=0.0
Q ss_pred hHHhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 002980 583 TTAGKKVDEREKVILDSREKIE-FYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKL-- 659 (861)
Q Consensus 583 ~elekela~Le~qi~~sree~e-~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL-- 659 (861)
..+...|.+..+++......++ .+++...+++.-|.+++..|..+.+++.+.+.+|+.|+..|-.+..-++--+..|
T Consensus 252 ~~l~~~l~~tan~lr~Q~~~ve~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTRle~ 331 (421)
T KOG2685|consen 252 EALDQTLRETANDLRTQADAVELAFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRLEN 331 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHHHHH
Q ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHH---HHHh
Q 002980 660 ---------------TIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKAL---TERC 715 (861)
Q Consensus 660 ---------------~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L---~e~~ 715 (861)
-.+-.+...++.-+..|+..|. +-++....|-+.-..++.+|+=....| +|+|
T Consensus 332 Rt~RPnvELCrD~AQ~~L~~EV~~l~~t~~~L~~kL~---eA~~~l~~L~~~~~rLe~di~~k~nsL~ID~ekc 402 (421)
T KOG2685|consen 332 RTYRPNVELCRDQAQYRLVDEVHELDDTVAALKEKLD---EAEDSLKLLVNHRARLERDIAIKANSLFIDREKC 402 (421)
T ss_pred cccCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhcchhccHHHH
No 488
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=88.95 E-value=5 Score=47.61 Aligned_cols=92 Identities=10% Similarity=0.137 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-chhhHHHHHHH
Q 002980 621 DNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGS-ADGLLQVRADR 699 (861)
Q Consensus 621 e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~-~n~~Lkera~~ 699 (861)
..++.++..++....-+...+..+|+...+.++..|.+...++.+|+.+++++..|++|+.--+..-+ +...|=|++-+
T Consensus 419 ~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLas 498 (518)
T PF10212_consen 419 MSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLAS 498 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q 002980 700 IQSDLEELLKALT 712 (861)
Q Consensus 700 in~el~eL~~~L~ 712 (861)
+|..|.+-.+.+.
T Consensus 499 mNeqL~~Q~eeI~ 511 (518)
T PF10212_consen 499 MNEQLAKQREEIQ 511 (518)
T ss_pred HHHHHHHHHHHHH
No 489
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=88.89 E-value=26 Score=37.77 Aligned_cols=125 Identities=15% Similarity=0.162 Sum_probs=0.0
Q ss_pred hhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHH------------HHHHHHHHH
Q 002980 582 STTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAET------------LGKKYEEKY 649 (861)
Q Consensus 582 ~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIes------------Lr~k~ee~~ 649 (861)
+..++.-...|+--|.+.+.++..++....++...+.+.+.++++...++.+.+..... +-.++....
T Consensus 19 ~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le 98 (225)
T COG1842 19 LDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLE 98 (225)
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHH
Q 002980 650 KQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEEL 707 (861)
Q Consensus 650 kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL 707 (861)
++++.++.++..++.....++..+..|+..|.++ ..+..--.........+..+.++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~-~~~~~~l~ar~~~akA~~~v~~~ 155 (225)
T COG1842 99 DLAKALEAELQQAEEQVEKLKKQLAALEQKIAEL-RAKKEALKARKAAAKAQEKVNRS 155 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
No 490
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=88.87 E-value=14 Score=37.50 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=0.0
Q ss_pred ccchhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002980 577 SKLQDSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIA 656 (861)
Q Consensus 577 ~~~qE~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elE 656 (861)
+..+-+.+....|.++...+......++..+..+.+....-.+....+.++.+........+..+....++...-+.++.
T Consensus 90 ~t~~~~~~I~~~i~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~i~~~~~~i~~~i~~i~~~~~~~~~~~~~i~ 169 (213)
T PF00015_consen 90 QTSESAKEISEIIEEIQEQISQVVESMEESREQIEEGSESVEETSESLEEIAESVEEISDSIEEISESAEEQSESIEQIN 169 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhcccchhcchhhhhhhhhhhHHhhhhHHHHhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhH
Q 002980 657 SKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLL 693 (861)
Q Consensus 657 sQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~~n~~L 693 (861)
..+........+.....+++......|.+...++..+
T Consensus 170 ~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~a~~L~~~ 206 (213)
T PF00015_consen 170 ESIEEISEISEQISASSEEIAEAAEELSESAEELQEL 206 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=88.86 E-value=8.8 Score=42.21 Aligned_cols=141 Identities=18% Similarity=0.132 Sum_probs=0.0
Q ss_pred cccccccc-hhhhHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002980 572 EYSADSKL-QDSTTAGKKVDEREKVILD-SREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKY 649 (861)
Q Consensus 572 ~~~s~~~~-qE~~elekela~Le~qi~~-sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~ 649 (861)
++.-+|.+ +++-....++.+.+..+.+ ...+-...++++++|+....+...++.+.. +-.+--+.-+++.++..
T Consensus 293 eeeelnikk~e~~kikqe~ddkdk~~ed~e~kkrqlerqekqeleqmaeeekkr~eeae----erqraeekeq~eaee~~ 368 (445)
T KOG2891|consen 293 EEEELNIKKAEACKIKQEFDDKDKHLEDAEIKKRQLERQEKQELEQMAEEEKKREEEAE----ERQRAEEKEQKEAEELE 368 (445)
T ss_pred hHhhhhhhHHHhhchhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhhHHHHHHHHHHHH
Q ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--chhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 002980 650 KQVAEIA-------SKLTIEDAKFRELQERKMELHQAIVNMERGGS--ADGLLQVRADRIQSDLEELLKALTERCK 716 (861)
Q Consensus 650 kqv~elE-------sQL~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~--~n~~Lkera~~in~el~eL~~~L~e~~~ 716 (861)
...+..+ ..-.+.-.+++..|.++..|+.+++++.+... ..+.-.-+...+|..--.|...|.++.|
T Consensus 369 ra~kr~egvkllkf~fekieareerrkqkeeeklk~e~qkikeleek~~eeedal~~all~~qeirl~~~lkek~k 444 (445)
T KOG2891|consen 369 RARKREEGVKLLKFEFEKIEAREERRKQKEEEKLKAEEQKIKELEEKIKEEEDALLLALLNLQEIRLIAELKEKAK 444 (445)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
No 492
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=88.81 E-value=19 Score=41.50 Aligned_cols=133 Identities=15% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHH---HHHHHH-HHHHHHHHHHHHHHHH----hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 589 VDEREKVILD---SREKIE-FYRSKMQELVLYKSRC----DNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLT 660 (861)
Q Consensus 589 la~Le~qi~~---sree~e-~LrsQlQEL~~~Ksr~----e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~ 660 (861)
|..-++++.+ +|+.++ .+..-..+|..+.... .+++.++.+-+.+++-.+..+..+|.+..+.|..|+.-|.
T Consensus 210 i~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~ 289 (384)
T PF03148_consen 210 IQRAEKERQSSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIR 289 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH-----------------HHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhHhcCcccc
Q 002980 661 IEDAKFRELQERKM-----------------ELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGIDVK 723 (861)
Q Consensus 661 ~lEa~L~d~Q~EL~-----------------eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L~e~~~~~g~~~~ 723 (861)
..++.|+=++++|. .|..|+.+| ......|+++++..+..+..|........+...+|.+
T Consensus 290 ~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l---~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~~ 366 (384)
T PF03148_consen 290 DKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKEL---RESIEALQEKLDEAEASLQKLERTRLRLEEDIAVKNN 366 (384)
T ss_pred HHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred c
Q 002980 724 S 724 (861)
Q Consensus 724 ~ 724 (861)
+
T Consensus 367 s 367 (384)
T PF03148_consen 367 S 367 (384)
T ss_pred H
No 493
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=88.80 E-value=0.13 Score=63.33 Aligned_cols=147 Identities=14% Similarity=0.222 Sum_probs=0.0
Q ss_pred hhhccCCCcccccccchhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHH
Q 002980 564 LANQLDNGEYSADSKLQDSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGK 643 (861)
Q Consensus 564 ~~~~l~~~~~~s~~~~qE~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~ 643 (861)
+...+.+-......++.+......++..++.++.+++..+.....+.++....|.+.+..+.++. +.+.++..++.
T Consensus 486 L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~~l~~~~~~~~d~~~lk~~le~~~~~l~----e~~~e~~~~~~ 561 (713)
T PF05622_consen 486 LQSQLEDANRRKEKLEEENREANEKILELQSQLEELQKSLQEQGSKSEDSSELKQKLEEHLEKLR----ELKDELQKKRE 561 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 002980 644 KYEEKYKQVAEI-ASKLTIEDAKFRELQERKMELHQAIV-NMERGGSADGLLQVRADRIQSDLEELLKALTER 714 (861)
Q Consensus 644 k~ee~~kqv~el-EsQL~~lEa~L~d~Q~EL~eLqqeIq-kLe~~~~~n~~Lkera~~in~el~eL~~~L~e~ 714 (861)
.+++...++... +.+|..++..|..+..++...++-+. -||+...-...|..+.+....++.-|+++|.|+
T Consensus 562 ~le~l~~~~~~~~~~ki~~Le~~L~~k~~e~~~~eer~k~~lekak~vi~~Ld~k~~~~~~e~~~L~~ql~e~ 634 (713)
T PF05622_consen 562 QLEELEQELNQSLSQKIEELEEALQKKEEEMRAMEERYKKYLEKAKEVIKTLDPKQNPSSPEIQALKKQLQEK 634 (713)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHhhccChhccCChHHHHHHHHHHHHH
No 494
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=88.69 E-value=9.9 Score=43.69 Aligned_cols=142 Identities=14% Similarity=0.260 Sum_probs=0.0
Q ss_pred hhhHHhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002980 581 DSTTAGKKVDEREKVILDSREK--IEFYRSKMQELVLYKSRCD-----NRLNEITERALADRREAETLGKKYEEKYKQVA 653 (861)
Q Consensus 581 E~~elekela~Le~qi~~sree--~e~LrsQlQEL~~~Ksr~e-----~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~ 653 (861)
.+.++.+++.++.+.+..+..- ++.++.++.+|+..-++.. .+..++..+.+.++.-++.++ +|.+..++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~~~-~l~~~~~e~~ 79 (367)
T PRK00578 1 MINEISERLKDLDEKLENIRGVLDVDALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKAKLDTLE-ELRQRLDDLE 79 (367)
T ss_pred CchHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHh-------ccCcchhhHHHHH----HHHHHHHHHHHHHHHHHhHhcCc
Q 002980 654 EIASKLTI--EDAKFRELQERKMELHQAIVNME-------RGGSADGLLQVRA----DRIQSDLEELLKALTERCKKHGI 720 (861)
Q Consensus 654 elEsQL~~--lEa~L~d~Q~EL~eLqqeIqkLe-------~~~~~n~~Lkera----~~in~el~eL~~~L~e~~~~~g~ 720 (861)
++.+=+.. -+.-+..++.++.+|+..+.+|+ .....+..|+-++ ....-=..+|-+-+..+|.+.|.
T Consensus 80 ~~~ell~~e~D~el~~~a~~e~~~l~~~l~~le~~~ll~~~~D~~~~~leI~aG~GG~Ea~lfa~~L~~mY~~~a~~~g~ 159 (367)
T PRK00578 80 ELLELAEEEDDEETLAEAEAELKALEKKLAALELERLLSGEYDANNAILTIHAGAGGTEAQDWASMLLRMYLRWAERHGF 159 (367)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCeEEEEecCCCcHHHHHHHHHHHHHHHHHHHHcCC
Q ss_pred ccc
Q 002980 721 DVK 723 (861)
Q Consensus 721 ~~~ 723 (861)
++.
T Consensus 160 ~~e 162 (367)
T PRK00578 160 KVE 162 (367)
T ss_pred EEE
No 495
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=88.69 E-value=7.1 Score=42.77 Aligned_cols=190 Identities=15% Similarity=0.014 Sum_probs=0.0
Q ss_pred CccchhhhhccCCCcccccccchhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHH
Q 002980 558 PVLDDNLANQLDNGEYSADSKLQDSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRRE 637 (861)
Q Consensus 558 p~~d~~~~~~l~~~~~~s~~~~qE~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kre 637 (861)
|..+..-+.+-+.|.+.+..+...+.++ ++..+|..++...-.-+-.+-++-.=.-....++-++--++.+--..++.-
T Consensus 35 ~~~~~~~~d~~~~~~q~~~~i~~k~~e~-r~~r~lat~l~~~g~~i~e~ls~~~~~~~~~~~aa~Rplel~e~Ekvlk~a 113 (338)
T KOG3647|consen 35 PGQNEADNDEEDQRDQYRSLIGDKIEEL-RKARELATDLTQRGTTICEMLSKELLHKESLMSAAQRPLELLEVEKVLKSA 113 (338)
T ss_pred cCcCCCCCCcchHHHHHHHHHHHHHHHH-HHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhccCcchhhHHHHHHHHHHHHHH
Q 002980 638 AETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV-----------NMERGGSADGLLQVRADRIQSDLEE 706 (861)
Q Consensus 638 IesLr~k~ee~~kqv~elEsQL~~lEa~L~d~Q~EL~eLqqeIq-----------kLe~~~~~n~~Lkera~~in~el~e 706 (861)
|+.+..+.++...++.++.+..+.+++.+...+.||+++++-++ +.|..-+++..|=+++=.-=.-|+-
T Consensus 114 Iq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~l~f~nl~y 193 (338)
T KOG3647|consen 114 IQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRYFLRFHNLDY 193 (338)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q ss_pred HHHHHHHHhHhcCccccccceeecCCCCCCCcccccccchhhhhhccc
Q 002980 707 LLKALTERCKKHGIDVKSHAVIELPFGWQPGIQEGAGVWDEDWDKFED 754 (861)
Q Consensus 707 L~~~L~e~~~~~g~~~~~~~~~e~p~gw~~~~~e~a~~w~e~wd~~~d 754 (861)
|+++|..+.+ ..-+.-|==-.-++=|||+-.+=+++-|+-.|
T Consensus 194 L~~qldd~~r------se~~rqeeaensm~~i~ekl~ee~~~~d~~g~ 235 (338)
T KOG3647|consen 194 LKSQLDDRTR------SEPIRQEEAENSMPFIPEKLIEEDDDDDDEGD 235 (338)
T ss_pred HHHHHHHHhh------hhHHHHHHHHhcchhhHHHhhhhhhhcccccc
No 496
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=88.67 E-value=8.1 Score=40.31 Aligned_cols=98 Identities=19% Similarity=0.219 Sum_probs=0.0
Q ss_pred hhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---
Q 002980 580 QDSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIA--- 656 (861)
Q Consensus 580 qE~~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elE--- 656 (861)
++...++.++..|..++.+.+.+++.++.+++.+..-+...+.|.. +-.+++.|++++.+..++++...
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~--------~l~~l~~l~~~~~~l~~el~~~~~~D 133 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREE--------LLEELEELKKELKELKKELEKYSEND 133 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhcC
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002980 657 -SKLTIEDAKFRELQERKMELHQAIVNMER 685 (861)
Q Consensus 657 -sQL~~lEa~L~d~Q~EL~eLqqeIqkLe~ 685 (861)
..|..+..++..++...+.-..-|.-|+.
T Consensus 134 p~~i~~~~~~~~~~~~~anrwTDNI~~l~~ 163 (188)
T PF03962_consen 134 PEKIEKLKEEIKIAKEAANRWTDNIFSLKS 163 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
No 497
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=88.67 E-value=5.8 Score=39.96 Aligned_cols=107 Identities=19% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHH-----------------
Q 002980 600 REKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIA---SKL----------------- 659 (861)
Q Consensus 600 ree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elE---sQL----------------- 659 (861)
..+++.+-.+++.|+.+-+.++.++..++..++++..-++.|+ .++..+ +-|
T Consensus 5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~--------~lk~~~~g~E~LVpvGag~fv~~kv~~~~ 76 (145)
T COG1730 5 QQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLE--------NLKGAGEGKEVLVPVGAGLFVKAKVKDMD 76 (145)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhcCCCceEEEEcCCCceEEEEeccCc
Q ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhHh
Q 002980 660 -------------TIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKK 717 (861)
Q Consensus 660 -------------~~lEa~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L~e~~~~ 717 (861)
...++.+..++.++.+|...+++| ++....|-.++..+...+.++........++
T Consensus 77 kviV~iGsg~~ae~~~~eAie~l~k~~~~l~~~~~~l---~~~l~~l~~~~~~l~~~~q~~~q~~~~~~~~ 144 (145)
T COG1730 77 KVIVSIGSGYYAEKSADEAIEFLKKRIEELEKAIEKL---QQALAELAQRIEQLEQEAQQLQQKQAAAQKK 144 (145)
T ss_pred eEEEEcCCceeeeecHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
No 498
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=88.66 E-value=19 Score=39.68 Aligned_cols=130 Identities=15% Similarity=0.106 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 587 KKVDEREKVILDSREKIE-FYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAK 665 (861)
Q Consensus 587 kela~Le~qi~~sree~e-~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~lEa~ 665 (861)
+....|.++|.+.=..+= .|.+.+ ++-.-+.++-.+--|+.+--..++.-|..+..++++..+++.++++..+.+++.
T Consensus 120 k~~R~Laseit~~GA~LydlL~kE~-~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~K 198 (267)
T PF10234_consen 120 KAARQLASEITQRGASLYDLLGKEV-ELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAK 198 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchH-hHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH-----------HHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhHh
Q 002980 666 FRELQERKMELHQAIV-----------NMERGGSADGLLQVRADRIQSDLEELLKALTERCKK 717 (861)
Q Consensus 666 L~d~Q~EL~eLqqeIq-----------kLe~~~~~n~~Lkera~~in~el~eL~~~L~e~~~~ 717 (861)
++.++.||+..+.-|+ +.|+...++..|=+..-.==.-++=|+.+|.++-+.
T Consensus 199 Iekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~~~~~ 261 (267)
T PF10234_consen 199 IEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQLEEYNRR 261 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
No 499
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=88.54 E-value=15 Score=38.23 Aligned_cols=120 Identities=13% Similarity=0.184 Sum_probs=0.0
Q ss_pred hHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002980 583 TTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIE 662 (861)
Q Consensus 583 ~elekela~Le~qi~~sree~e~LrsQlQEL~~~Ksr~e~~L~ei~e~~s~~kreIesLr~k~ee~~kqv~elEsQL~~l 662 (861)
.++.+.-.++..++......-..|.+||+-+-.--..++.+=+.+-++-..+.++-..=..++..+..+++-+|.....+
T Consensus 53 ~e~~~q~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rL 132 (178)
T PF14073_consen 53 QELSKQNQDLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRL 132 (178)
T ss_pred chhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHH
Q 002980 663 DAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLE 705 (861)
Q Consensus 663 Ea~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~ 705 (861)
-+.-.-...++.+|++-|. +...+-..+|+++.++|+.++
T Consensus 133 t~~Q~~ae~Ki~~LE~KL~---eEehqRKlvQdkAaqLQt~lE 172 (178)
T PF14073_consen 133 TATQSLAETKIKELEEKLQ---EEEHQRKLVQDKAAQLQTGLE 172 (178)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHH
No 500
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=88.48 E-value=1.5 Score=45.16 Aligned_cols=66 Identities=20% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHH
Q 002980 646 EEKYKQVAEIASKLTIE-DAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKAL 711 (861)
Q Consensus 646 ee~~kqv~elEsQL~~l-Ea~L~d~Q~EL~eLqqeIqkLe~~~~~n~~Lkera~~in~el~eL~~~L 711 (861)
.+.+.+++..-.+|..+ +...++++.|+.+|+.+|+.||..+.+.+.|+.++..+..+|+..+++.
T Consensus 101 ~QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 101 HQVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Done!