Query 002982
Match_columns 861
No_of_seqs 411 out of 1977
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 14:40:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002982.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002982hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0245 Kinesin-like protein [ 100.0 1.3E-85 2.9E-90 762.4 21.4 327 66-394 3-375 (1221)
2 KOG0242 Kinesin-like protein [ 100.0 3.1E-83 6.7E-88 750.9 25.6 571 66-724 5-657 (675)
3 KOG4280 Kinesin-like protein [ 100.0 8.8E-83 1.9E-87 725.4 25.1 329 66-407 4-366 (574)
4 KOG0243 Kinesin-like protein [ 100.0 9.4E-82 2E-86 742.8 28.8 331 65-408 47-422 (1041)
5 PLN03188 kinesin-12 family pro 100.0 2.9E-79 6.3E-84 727.2 38.6 308 63-376 94-445 (1320)
6 KOG0240 Kinesin (SMY1 subfamil 100.0 1.4E-78 3E-83 676.7 40.9 337 65-406 5-371 (607)
7 cd01373 KISc_KLP2_like Kinesin 100.0 3.6E-76 7.7E-81 646.2 31.9 296 67-365 1-337 (337)
8 cd01370 KISc_KIP3_like Kinesin 100.0 3E-75 6.5E-80 639.1 31.9 297 68-365 1-338 (338)
9 KOG0241 Kinesin-like protein [ 100.0 9E-76 2E-80 668.7 24.0 321 66-388 3-372 (1714)
10 cd01368 KISc_KIF23_like Kinesi 100.0 1.3E-73 2.8E-78 627.8 32.2 297 67-363 1-345 (345)
11 cd01365 KISc_KIF1A_KIF1B Kines 100.0 1.7E-73 3.7E-78 628.8 32.9 306 67-372 1-356 (356)
12 cd01364 KISc_BimC_Eg5 Kinesin 100.0 1.3E-71 2.9E-76 612.5 32.3 305 67-373 2-351 (352)
13 cd01369 KISc_KHC_KIF5 Kinesin 100.0 3.1E-71 6.7E-76 603.3 31.8 295 67-365 2-325 (325)
14 cd01371 KISc_KIF3 Kinesin moto 100.0 3.8E-71 8.2E-76 605.3 32.5 298 67-365 1-333 (333)
15 cd01374 KISc_CENP_E Kinesin mo 100.0 5.7E-71 1.2E-75 600.6 33.2 296 68-365 1-321 (321)
16 cd01367 KISc_KIF2_like Kinesin 100.0 2.5E-71 5.5E-76 604.3 30.2 288 67-363 1-322 (322)
17 cd01376 KISc_KID_like Kinesin 100.0 3.8E-70 8.2E-75 594.2 32.6 289 68-363 1-319 (319)
18 cd01372 KISc_KIF4 Kinesin moto 100.0 2.4E-70 5.3E-75 599.6 31.2 296 68-366 2-341 (341)
19 cd01375 KISc_KIF9_like Kinesin 100.0 2.9E-69 6.3E-74 590.8 31.6 290 68-363 1-334 (334)
20 cd01366 KISc_C_terminal Kinesi 100.0 2.7E-68 5.7E-73 580.9 33.0 296 66-367 1-328 (329)
21 smart00129 KISc Kinesin motor, 100.0 2.2E-66 4.9E-71 566.3 33.2 303 68-372 1-335 (335)
22 KOG0239 Kinesin (KAR3 subfamil 100.0 1.3E-67 2.8E-72 617.5 20.6 306 61-372 308-647 (670)
23 cd00106 KISc Kinesin motor dom 100.0 2.6E-65 5.6E-70 555.7 33.1 294 68-363 1-328 (328)
24 KOG0246 Kinesin-like protein [ 100.0 3.2E-66 6.9E-71 575.9 26.0 293 65-366 206-542 (676)
25 PF00225 Kinesin: Kinesin moto 100.0 1.4E-66 3.1E-71 567.1 19.7 292 74-365 1-335 (335)
26 KOG0247 Kinesin-like protein [ 100.0 1E-62 2.3E-67 560.4 23.8 306 64-373 28-444 (809)
27 KOG0244 Kinesin-like protein [ 100.0 3.9E-60 8.4E-65 552.6 26.1 292 75-373 1-325 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 1.3E-57 2.8E-62 528.9 25.2 299 65-373 20-344 (568)
29 cd01363 Motor_domain Myosin an 100.0 8.2E-47 1.8E-51 381.8 13.9 178 124-344 8-186 (186)
30 COG5059 KIP1 Kinesin-like prot 97.5 1.1E-06 2.4E-11 103.9 -11.0 231 65-308 303-566 (568)
31 TIGR02169 SMC_prok_A chromosom 96.5 0.99 2.2E-05 57.6 28.0 45 799-843 458-502 (1164)
32 TIGR02169 SMC_prok_A chromosom 96.1 4.1 8.8E-05 52.1 30.5 15 145-159 27-41 (1164)
33 PF09726 Macoilin: Transmembra 96.0 0.7 1.5E-05 56.8 21.7 189 557-824 423-629 (697)
34 TIGR02168 SMC_prok_B chromosom 95.7 4.2 9E-05 51.8 28.1 16 143-158 25-40 (1179)
35 TIGR02168 SMC_prok_B chromosom 95.7 2.7 5.8E-05 53.6 26.3 25 729-753 867-891 (1179)
36 PRK09039 hypothetical protein; 95.6 0.74 1.6E-05 52.1 18.8 52 563-638 43-94 (343)
37 PRK11637 AmiB activator; Provi 95.5 1.5 3.3E-05 50.7 21.3 66 687-752 185-250 (428)
38 PRK11637 AmiB activator; Provi 95.5 4.9 0.00011 46.6 25.4 23 800-822 230-252 (428)
39 PRK02224 chromosome segregatio 95.3 11 0.00025 47.3 29.3 14 145-158 27-40 (880)
40 KOG0963 Transcription factor/C 95.1 0.94 2E-05 54.2 17.8 82 556-639 179-270 (629)
41 PF04849 HAP1_N: HAP1 N-termin 94.9 0.63 1.4E-05 51.8 15.0 127 681-822 169-295 (306)
42 COG1196 Smc Chromosome segrega 94.8 13 0.00028 48.7 28.8 52 784-835 858-909 (1163)
43 PHA02562 46 endonuclease subun 94.7 5.2 0.00011 47.4 23.1 68 517-586 180-247 (562)
44 PRK02224 chromosome segregatio 94.5 6.7 0.00015 49.3 24.7 29 517-545 418-446 (880)
45 COG4942 Membrane-bound metallo 94.1 7.9 0.00017 45.1 21.6 52 786-837 186-244 (420)
46 PF07888 CALCOCO1: Calcium bin 94.0 18 0.00039 43.5 26.2 85 729-838 372-463 (546)
47 TIGR00606 rad50 rad50. This fa 93.9 30 0.00064 46.0 29.4 24 813-836 1001-1024(1311)
48 PHA02562 46 endonuclease subun 93.7 3.1 6.8E-05 49.2 18.5 34 604-637 213-246 (562)
49 PF14662 CCDC155: Coiled-coil 93.7 3.1 6.8E-05 43.5 15.9 57 685-755 66-122 (193)
50 PF09726 Macoilin: Transmembra 93.0 17 0.00037 45.1 23.6 241 512-821 412-654 (697)
51 PRK03918 chromosome segregatio 93.0 19 0.00042 45.1 24.7 15 145-159 27-41 (880)
52 PF12128 DUF3584: Protein of u 92.9 33 0.00072 45.2 27.4 71 685-755 606-676 (1201)
53 PRK06893 DNA replication initi 92.5 0.099 2.1E-06 55.2 3.4 47 108-160 12-58 (229)
54 TIGR00606 rad50 rad50. This fa 92.5 19 0.00042 47.7 24.6 75 561-637 794-876 (1311)
55 KOG0980 Actin-binding protein 92.4 39 0.00084 42.6 29.1 123 681-821 419-551 (980)
56 PF00308 Bac_DnaA: Bacterial d 92.3 0.075 1.6E-06 56.0 2.1 50 108-160 4-53 (219)
57 COG3883 Uncharacterized protei 92.2 5.9 0.00013 43.5 16.2 142 551-733 72-233 (265)
58 KOG0996 Structural maintenance 92.0 50 0.0011 43.0 25.7 102 557-698 818-919 (1293)
59 COG0556 UvrB Helicase subunit 91.8 0.22 4.8E-06 58.7 5.3 68 108-180 4-101 (663)
60 COG1196 Smc Chromosome segrega 91.6 40 0.00086 44.3 25.6 30 726-755 402-431 (1163)
61 KOG4674 Uncharacterized conser 91.4 16 0.00034 49.3 21.5 197 560-818 1168-1389(1822)
62 KOG0161 Myosin class II heavy 91.1 20 0.00044 48.9 22.3 34 554-587 924-957 (1930)
63 PRK09039 hypothetical protein; 90.7 7.1 0.00015 44.3 15.7 42 783-824 138-179 (343)
64 PRK06620 hypothetical protein; 90.5 0.12 2.6E-06 54.4 1.4 49 107-159 11-62 (214)
65 PRK04863 mukB cell division pr 90.5 73 0.0016 43.1 26.5 212 608-848 394-620 (1486)
66 KOG0946 ER-Golgi vesicle-tethe 89.8 19 0.00042 44.8 18.8 113 515-640 703-828 (970)
67 PF00038 Filament: Intermediat 89.7 36 0.00078 37.5 25.0 59 783-844 224-282 (312)
68 COG2805 PilT Tfp pilus assembl 89.6 0.2 4.2E-06 55.8 2.1 31 129-159 113-143 (353)
69 KOG0976 Rho/Rac1-interacting s 89.5 67 0.0014 40.3 24.1 35 608-642 180-214 (1265)
70 COG2804 PulE Type II secretory 89.5 0.33 7.2E-06 57.1 4.1 30 130-159 247-276 (500)
71 PF05701 WEMBL: Weak chloropla 89.1 58 0.0013 39.1 25.4 35 608-642 120-154 (522)
72 PF15070 GOLGA2L5: Putative go 89.1 66 0.0014 39.6 23.1 107 720-837 278-387 (617)
73 PRK14088 dnaA chromosomal repl 88.7 0.28 6.1E-06 57.1 2.8 49 107-159 100-148 (440)
74 PRK14086 dnaA chromosomal repl 88.6 0.26 5.6E-06 59.6 2.3 51 107-160 283-333 (617)
75 PRK05642 DNA replication initi 88.5 0.33 7.1E-06 51.6 2.9 46 108-160 15-64 (234)
76 PRK09087 hypothetical protein; 88.4 0.26 5.6E-06 52.3 2.0 46 108-159 17-62 (226)
77 KOG0976 Rho/Rac1-interacting s 88.4 19 0.0004 44.8 17.2 117 689-826 183-307 (1265)
78 PRK06526 transposase; Provisio 88.1 0.27 5.8E-06 53.3 1.9 45 111-160 73-117 (254)
79 PRK12377 putative replication 87.9 0.39 8.4E-06 52.0 3.0 51 108-160 70-120 (248)
80 PRK08116 hypothetical protein; 87.2 0.37 8E-06 52.5 2.4 51 108-160 81-133 (268)
81 PRK08084 DNA replication initi 87.2 0.43 9.3E-06 50.7 2.8 46 108-159 18-63 (235)
82 PRK00149 dnaA chromosomal repl 87.1 0.41 8.9E-06 55.6 2.8 50 107-159 117-166 (450)
83 TIGR00362 DnaA chromosomal rep 86.9 0.42 9.2E-06 54.6 2.8 50 107-159 105-154 (405)
84 PRK03918 chromosome segregatio 86.9 97 0.0021 39.1 26.7 14 523-536 167-180 (880)
85 KOG0612 Rho-associated, coiled 86.8 57 0.0012 42.6 20.8 73 684-756 506-581 (1317)
86 TIGR02928 orc1/cdc6 family rep 86.4 0.62 1.3E-05 51.8 3.6 22 138-159 37-58 (365)
87 KOG0612 Rho-associated, coiled 86.3 65 0.0014 42.1 20.9 76 681-756 576-651 (1317)
88 KOG0250 DNA repair protein RAD 86.0 1.2E+02 0.0026 39.4 23.1 174 517-755 254-428 (1074)
89 PRK00411 cdc6 cell division co 85.6 0.7 1.5E-05 52.0 3.6 22 138-159 52-73 (394)
90 PRK07952 DNA replication prote 85.6 0.62 1.3E-05 50.3 3.0 51 108-160 68-118 (244)
91 PF05483 SCP-1: Synaptonemal c 85.5 1E+02 0.0023 38.1 24.8 112 680-845 637-760 (786)
92 PRK14087 dnaA chromosomal repl 85.0 0.57 1.2E-05 54.8 2.6 50 108-160 111-160 (450)
93 TIGR03420 DnaA_homol_Hda DnaA 84.9 0.69 1.5E-05 47.7 2.9 46 108-159 11-56 (226)
94 cd00009 AAA The AAA+ (ATPases 84.6 0.77 1.7E-05 42.2 2.8 28 132-159 10-37 (151)
95 PRK08181 transposase; Validate 84.5 0.86 1.9E-05 49.9 3.5 46 110-160 79-125 (269)
96 PF09730 BicD: Microtubule-ass 84.4 1.2E+02 0.0026 38.0 24.6 60 683-756 262-321 (717)
97 KOG0977 Nuclear envelope prote 84.1 13 0.00029 44.6 13.2 103 685-806 41-172 (546)
98 PF04851 ResIII: Type III rest 84.0 0.74 1.6E-05 45.0 2.5 21 140-160 24-44 (184)
99 PRK04863 mukB cell division pr 84.0 1.8E+02 0.0039 39.6 25.3 66 785-850 1063-1131(1486)
100 PRK08727 hypothetical protein; 83.8 0.69 1.5E-05 49.1 2.4 44 108-159 15-59 (233)
101 KOG4360 Uncharacterized coiled 83.6 13 0.00028 44.1 12.4 119 685-822 172-294 (596)
102 KOG0933 Structural maintenance 83.6 72 0.0016 41.0 19.3 58 561-634 267-324 (1174)
103 PRK06835 DNA replication prote 83.6 0.51 1.1E-05 53.0 1.4 36 123-160 167-202 (329)
104 KOG0977 Nuclear envelope prote 83.4 1.2E+02 0.0025 37.0 20.7 120 517-638 69-196 (546)
105 TIGR02538 type_IV_pilB type IV 83.0 1.1 2.4E-05 53.8 4.0 28 132-159 307-334 (564)
106 KOG0946 ER-Golgi vesicle-tethe 83.0 41 0.00088 42.2 16.6 64 555-635 653-716 (970)
107 PF09738 DUF2051: Double stran 82.9 45 0.00098 37.5 16.0 118 514-637 108-245 (302)
108 PRK08903 DnaA regulatory inact 82.8 1 2.2E-05 46.9 3.2 48 107-159 13-60 (227)
109 PTZ00112 origin recognition co 82.5 1.3 2.8E-05 55.7 4.2 22 138-159 778-799 (1164)
110 PF12325 TMF_TATA_bd: TATA ele 82.1 16 0.00034 35.8 10.6 64 731-824 47-110 (120)
111 PF05667 DUF812: Protein of un 82.1 42 0.00092 41.1 16.6 29 608-636 318-346 (594)
112 PRK08939 primosomal protein Dn 81.8 0.91 2E-05 50.5 2.4 51 109-160 124-175 (306)
113 COG0593 DnaA ATPase involved i 81.1 0.98 2.1E-05 52.3 2.4 50 107-159 82-131 (408)
114 TIGR02533 type_II_gspE general 80.9 1.6 3.6E-05 51.6 4.3 28 132-159 233-260 (486)
115 PF07888 CALCOCO1: Calcium bin 79.9 1.5E+02 0.0033 36.0 28.4 18 488-505 90-107 (546)
116 smart00053 DYNc Dynamin, GTPas 79.9 5.6 0.00012 43.0 7.5 53 208-277 85-137 (240)
117 cd00046 DEXDc DEAD-like helica 79.8 0.78 1.7E-05 41.7 0.9 16 144-159 3-18 (144)
118 COG1579 Zn-ribbon protein, pos 79.7 43 0.00093 36.5 14.0 54 784-837 91-144 (239)
119 PF06005 DUF904: Protein of un 79.7 6.4 0.00014 35.1 6.5 32 685-716 24-55 (72)
120 KOG0250 DNA repair protein RAD 79.6 1.3E+02 0.0029 39.0 19.9 125 685-824 779-906 (1074)
121 PF10186 Atg14: UV radiation r 78.8 42 0.00091 36.2 13.9 68 688-755 22-90 (302)
122 PRK03992 proteasome-activating 78.7 1.7 3.7E-05 49.8 3.4 51 109-159 128-183 (389)
123 PRK13169 DNA replication intia 78.5 3 6.4E-05 40.2 4.3 35 681-715 17-51 (110)
124 COG1474 CDC6 Cdc6-related prot 78.4 1.7 3.7E-05 49.6 3.3 22 138-159 39-60 (366)
125 PRK04778 septation ring format 77.9 1.3E+02 0.0028 36.6 18.9 138 685-845 274-411 (569)
126 KOG4674 Uncharacterized conser 77.8 3E+02 0.0064 38.1 28.4 288 520-843 286-598 (1822)
127 PF13401 AAA_22: AAA domain; P 76.9 0.87 1.9E-05 42.6 0.3 19 141-159 4-22 (131)
128 COG4942 Membrane-bound metallo 76.9 1.6E+02 0.0035 34.7 19.9 30 684-713 159-188 (420)
129 PRK06921 hypothetical protein; 76.7 1.8 3.9E-05 47.2 2.7 36 124-160 98-136 (266)
130 TIGR01242 26Sp45 26S proteasom 76.6 3.3 7.1E-05 46.8 4.8 91 69-159 66-174 (364)
131 smart00382 AAA ATPases associa 76.5 1.1 2.3E-05 40.6 0.8 18 142-159 3-20 (148)
132 PF06156 DUF972: Protein of un 76.3 3.7 8E-05 39.3 4.3 34 681-714 17-50 (107)
133 KOG0249 LAR-interacting protei 76.0 2.1E+02 0.0046 35.8 19.4 135 692-845 117-258 (916)
134 PF13245 AAA_19: Part of AAA d 76.0 1.5 3.2E-05 39.0 1.5 26 133-159 3-28 (76)
135 PF05667 DUF812: Protein of un 76.0 59 0.0013 39.9 15.3 39 712-750 445-483 (594)
136 PRK10436 hypothetical protein; 75.9 1.5 3.3E-05 51.5 2.0 28 132-159 209-236 (462)
137 PF04849 HAP1_N: HAP1 N-termin 75.5 1.4E+02 0.003 33.8 16.7 31 607-637 216-246 (306)
138 PRK12422 chromosomal replicati 75.5 2.1 4.4E-05 50.2 2.9 51 107-160 106-160 (445)
139 PF00270 DEAD: DEAD/DEAH box h 75.0 1.6 3.5E-05 42.4 1.6 25 133-159 8-32 (169)
140 PTZ00454 26S protease regulato 74.9 1.9 4.2E-05 49.7 2.5 52 108-159 141-197 (398)
141 PF13514 AAA_27: AAA domain 74.9 2.6E+02 0.0056 36.8 21.7 31 725-755 893-923 (1111)
142 PF00437 T2SE: Type II/IV secr 74.7 1.2 2.5E-05 47.9 0.6 19 141-159 127-145 (270)
143 KOG0161 Myosin class II heavy 74.6 3.7E+02 0.008 37.7 26.3 159 685-846 956-1126(1930)
144 PF03915 AIP3: Actin interacti 74.6 35 0.00076 40.1 12.4 124 512-635 79-237 (424)
145 PF10186 Atg14: UV radiation r 73.9 1.1E+02 0.0024 33.0 15.5 31 560-590 21-51 (302)
146 PF12846 AAA_10: AAA-like doma 73.8 1.3 2.9E-05 46.9 0.7 19 141-159 1-19 (304)
147 cd01131 PilT Pilus retraction 73.8 1.4 3E-05 45.6 0.9 19 141-159 1-19 (198)
148 PRK09183 transposase/IS protei 73.5 1.8 3.9E-05 46.9 1.7 44 111-159 77-120 (259)
149 TIGR01420 pilT_fam pilus retra 73.4 1.8 4E-05 48.7 1.8 28 132-159 113-140 (343)
150 PF09730 BicD: Microtubule-ass 73.2 2.6E+02 0.0056 35.3 26.3 174 518-741 265-460 (717)
151 PF13604 AAA_30: AAA domain; P 73.2 2 4.2E-05 44.5 1.8 28 132-159 9-36 (196)
152 TIGR02525 plasmid_TraJ plasmid 73.0 2 4.4E-05 49.2 2.0 20 140-159 148-167 (372)
153 PF10211 Ax_dynein_light: Axon 72.9 90 0.002 32.7 13.9 65 688-752 122-187 (189)
154 PF01935 DUF87: Domain of unkn 72.8 1.6 3.4E-05 45.6 1.0 16 144-159 26-41 (229)
155 PTZ00361 26 proteosome regulat 71.8 4.6 9.9E-05 47.4 4.6 90 70-159 128-235 (438)
156 PF10174 Cast: RIM-binding pro 71.5 2.9E+02 0.0063 35.2 20.3 63 684-749 526-588 (775)
157 PF00769 ERM: Ezrin/radixin/mo 71.2 54 0.0012 35.7 12.3 69 687-755 48-116 (246)
158 TIGR02524 dot_icm_DotB Dot/Icm 71.2 2.3 4.9E-05 48.5 1.9 20 140-159 133-152 (358)
159 PF14197 Cep57_CLD_2: Centroso 71.0 20 0.00042 31.9 7.2 65 563-637 2-66 (69)
160 PF01637 Arch_ATPase: Archaeal 70.1 2.5 5.4E-05 42.9 1.8 30 130-159 9-38 (234)
161 KOG0933 Structural maintenance 70.1 3.4E+02 0.0074 35.4 21.7 42 801-846 894-935 (1174)
162 PF01695 IstB_IS21: IstB-like 69.9 3 6.4E-05 42.8 2.2 18 142-159 48-65 (178)
163 TIGR03015 pepcterm_ATPase puta 69.6 3.1 6.6E-05 44.2 2.4 23 137-159 39-61 (269)
164 COG1484 DnaC DNA replication p 69.6 3.7 7.9E-05 44.6 3.0 50 108-160 75-124 (254)
165 PF12128 DUF3584: Protein of u 69.5 3.8E+02 0.0083 35.7 25.8 17 143-159 19-35 (1201)
166 cd01129 PulE-GspE PulE/GspE Th 69.4 2.9 6.3E-05 45.5 2.2 27 133-159 72-98 (264)
167 TIGR00631 uvrb excinuclease AB 68.8 3.8 8.3E-05 50.3 3.2 66 109-179 2-97 (655)
168 KOG0989 Replication factor C, 68.2 4.1 9E-05 45.7 3.0 36 124-159 39-75 (346)
169 PF05970 PIF1: PIF1-like helic 67.8 3.7 8E-05 46.6 2.7 37 119-159 4-40 (364)
170 TIGR02782 TrbB_P P-type conjug 67.6 2.8 6.1E-05 46.5 1.6 28 131-159 123-150 (299)
171 COG1579 Zn-ribbon protein, pos 67.3 1.8E+02 0.0038 31.9 14.9 49 525-583 28-76 (239)
172 COG5008 PilU Tfp pilus assembl 67.2 3.9 8.5E-05 45.2 2.5 31 129-159 115-145 (375)
173 PF00004 AAA: ATPase family as 66.6 2.2 4.7E-05 39.6 0.4 16 144-159 1-16 (132)
174 PTZ00121 MAEBL; Provisional 66.5 44 0.00096 44.3 11.5 101 719-829 1575-1680(2084)
175 PF13851 GAS: Growth-arrest sp 66.5 1.2E+02 0.0027 32.0 13.4 142 560-756 28-171 (201)
176 PLN00020 ribulose bisphosphate 66.4 4.7 0.0001 46.6 3.0 53 107-159 110-166 (413)
177 PF13086 AAA_11: AAA domain; P 65.7 3.2 6.8E-05 42.1 1.4 18 143-160 19-36 (236)
178 PRK13894 conjugal transfer ATP 65.6 3.3 7.2E-05 46.5 1.7 28 131-159 139-166 (319)
179 PF15450 DUF4631: Domain of un 65.3 94 0.002 37.4 13.2 133 517-700 336-469 (531)
180 TIGR02680 conserved hypothetic 65.1 4.9E+02 0.011 35.3 22.9 85 555-639 745-835 (1353)
181 PRK12402 replication factor C 64.9 5 0.00011 44.0 2.9 43 109-159 12-54 (337)
182 PF05673 DUF815: Protein of un 64.8 3 6.5E-05 45.4 1.1 127 109-244 24-155 (249)
183 PF13479 AAA_24: AAA domain 64.8 4 8.6E-05 42.7 2.0 21 141-161 3-23 (213)
184 KOG4673 Transcription factor T 64.7 3.7E+02 0.008 33.7 18.3 136 690-843 413-549 (961)
185 PF13191 AAA_16: AAA ATPase do 64.5 2.6 5.6E-05 41.6 0.5 24 136-159 19-42 (185)
186 PF02403 Seryl_tRNA_N: Seryl-t 63.8 33 0.00071 32.1 7.8 66 515-590 40-105 (108)
187 PF07106 TBPIP: Tat binding pr 63.8 68 0.0015 32.5 10.6 65 686-755 72-136 (169)
188 PF00448 SRP54: SRP54-type pro 63.8 2.7 5.9E-05 43.8 0.5 17 143-159 3-19 (196)
189 smart00487 DEXDc DEAD-like hel 63.6 4.8 0.0001 39.0 2.2 24 135-159 19-42 (201)
190 PF15035 Rootletin: Ciliary ro 63.2 1.2E+02 0.0026 31.7 12.4 75 560-639 17-95 (182)
191 PF13207 AAA_17: AAA domain; P 63.1 3 6.6E-05 38.6 0.7 17 143-159 1-17 (121)
192 PLN03188 kinesin-12 family pro 62.5 5.2E+02 0.011 34.7 20.3 51 550-640 958-1008(1320)
193 PF14362 DUF4407: Domain of un 62.0 33 0.00071 37.9 8.6 40 717-756 124-163 (301)
194 PF00580 UvrD-helicase: UvrD/R 61.8 3.4 7.5E-05 44.1 0.9 20 140-159 12-31 (315)
195 PRK15422 septal ring assembly 61.4 11 0.00024 34.2 3.9 32 685-716 24-62 (79)
196 PF10481 CENP-F_N: Cenp-F N-te 61.1 2.5E+02 0.0054 31.4 14.6 68 685-752 59-133 (307)
197 PRK11281 hypothetical protein; 61.0 4.2E+02 0.0091 35.2 19.1 29 792-822 237-265 (1113)
198 COG2433 Uncharacterized conser 60.6 41 0.0009 40.9 9.4 70 731-823 439-508 (652)
199 PRK10884 SH3 domain-containing 60.1 35 0.00076 36.3 8.0 73 681-756 95-167 (206)
200 KOG0978 E3 ubiquitin ligase in 59.7 4.4E+02 0.0096 33.2 18.0 37 720-756 159-195 (698)
201 PF04111 APG6: Autophagy prote 59.6 85 0.0018 35.4 11.4 59 687-753 10-68 (314)
202 PF00038 Filament: Intermediat 59.5 2.8E+02 0.006 30.6 26.9 65 555-636 71-135 (312)
203 PRK12723 flagellar biosynthesi 59.4 8.2 0.00018 44.6 3.4 19 141-159 174-192 (388)
204 TIGR01817 nifA Nif-specific re 59.1 4.8 0.0001 47.9 1.5 110 108-223 192-318 (534)
205 PRK13833 conjugal transfer pro 59.0 5.3 0.00011 45.1 1.8 28 131-159 135-162 (323)
206 PF03962 Mnd1: Mnd1 family; I 58.7 1.4E+02 0.003 31.3 12.0 63 556-636 66-128 (188)
207 cd01130 VirB11-like_ATPase Typ 58.5 5.9 0.00013 40.4 1.9 29 130-159 15-43 (186)
208 PHA02544 44 clamp loader, smal 58.5 6.2 0.00013 43.2 2.2 19 141-159 43-61 (316)
209 TIGR03499 FlhF flagellar biosy 58.2 9.2 0.0002 42.0 3.5 17 143-159 196-212 (282)
210 PF02562 PhoH: PhoH-like prote 57.7 6.6 0.00014 41.6 2.1 20 140-159 18-37 (205)
211 PF05622 HOOK: HOOK protein; 57.5 3.4 7.4E-05 51.0 0.0 62 513-584 293-357 (713)
212 PHA00729 NTP-binding motif con 57.1 8.1 0.00018 41.6 2.7 32 129-160 5-36 (226)
213 PF00910 RNA_helicase: RNA hel 57.1 3.8 8.2E-05 38.2 0.2 16 144-159 1-16 (107)
214 COG1222 RPT1 ATP-dependent 26S 57.0 11 0.00024 43.3 3.8 91 67-157 93-201 (406)
215 PF05557 MAD: Mitotic checkpoi 56.8 35 0.00076 42.4 8.5 23 728-750 606-628 (722)
216 cd00268 DEADc DEAD-box helicas 56.7 7.3 0.00016 39.4 2.2 23 134-158 31-53 (203)
217 PF13671 AAA_33: AAA domain; P 56.7 4.4 9.5E-05 38.5 0.6 16 144-159 2-17 (143)
218 PF13870 DUF4201: Domain of un 56.5 2.4E+02 0.0051 28.8 13.4 77 559-637 6-82 (177)
219 PF05557 MAD: Mitotic checkpoi 56.3 84 0.0018 39.2 11.6 78 557-637 508-585 (722)
220 PRK10361 DNA recombination pro 56.2 3.3E+02 0.0071 32.8 15.7 20 732-751 169-188 (475)
221 PF01580 FtsK_SpoIIIE: FtsK/Sp 56.2 4.1 8.9E-05 41.8 0.3 17 143-159 40-56 (205)
222 PF08172 CASP_C: CASP C termin 56.1 1.7E+02 0.0036 32.2 12.5 99 555-700 2-128 (248)
223 PTZ00424 helicase 45; Provisio 55.6 6.5 0.00014 44.3 1.8 26 132-159 58-83 (401)
224 KOG2543 Origin recognition com 55.6 5 0.00011 46.3 0.9 71 142-221 31-106 (438)
225 PF12240 Angiomotin_C: Angiomo 55.4 49 0.0011 35.2 7.9 69 745-830 31-99 (205)
226 COG4467 Regulator of replicati 54.6 32 0.0007 33.1 5.8 30 685-714 21-50 (114)
227 PRK11776 ATP-dependent RNA hel 54.6 7.3 0.00016 45.2 2.0 24 133-158 35-58 (460)
228 TIGR03185 DNA_S_dndD DNA sulfu 54.5 5E+02 0.011 32.0 23.2 17 143-159 30-46 (650)
229 PRK10929 putative mechanosensi 54.5 1.9E+02 0.0042 38.1 14.6 66 733-824 178-248 (1109)
230 PRK13900 type IV secretion sys 54.4 7.4 0.00016 44.0 2.0 29 130-159 150-178 (332)
231 TIGR00635 ruvB Holliday juncti 54.4 7.5 0.00016 42.3 2.0 40 119-159 7-48 (305)
232 PF07728 AAA_5: AAA domain (dy 54.3 4.8 0.0001 38.5 0.4 16 144-159 2-17 (139)
233 TIGR02903 spore_lon_C ATP-depe 54.1 7 0.00015 47.7 1.9 43 109-159 151-193 (615)
234 PF06785 UPF0242: Uncharacteri 54.0 62 0.0013 36.9 8.8 55 701-755 100-154 (401)
235 COG4962 CpaF Flp pilus assembl 53.8 7.6 0.00017 44.2 1.9 28 131-159 164-191 (355)
236 KOG0018 Structural maintenance 53.5 6.3E+02 0.014 33.3 18.1 31 783-813 815-845 (1141)
237 KOG4360 Uncharacterized coiled 53.4 87 0.0019 37.6 10.2 33 607-639 215-247 (596)
238 COG5185 HEC1 Protein involved 53.3 76 0.0016 37.7 9.6 74 668-755 516-589 (622)
239 PF06414 Zeta_toxin: Zeta toxi 53.3 6.4 0.00014 40.5 1.2 20 140-159 14-33 (199)
240 PRK13851 type IV secretion sys 53.2 5.6 0.00012 45.2 0.8 28 131-159 153-180 (344)
241 PF12325 TMF_TATA_bd: TATA ele 53.1 1.2E+02 0.0027 29.7 9.8 97 519-635 17-113 (120)
242 PF10458 Val_tRNA-synt_C: Valy 53.1 52 0.0011 28.5 6.5 38 557-594 2-39 (66)
243 PRK05022 anaerobic nitric oxid 52.8 7.2 0.00016 46.3 1.7 108 110-223 185-309 (509)
244 KOG0243 Kinesin-like protein [ 52.6 3.5E+02 0.0076 35.4 15.9 111 615-743 401-512 (1041)
245 PF00063 Myosin_head: Myosin h 52.5 9.5 0.00021 47.0 2.6 38 122-159 66-103 (689)
246 PLN03229 acetyl-coenzyme A car 52.3 79 0.0017 39.6 10.1 86 552-640 597-734 (762)
247 PRK13764 ATPase; Provisional 52.2 7.3 0.00016 47.5 1.6 20 140-159 256-275 (602)
248 PF11559 ADIP: Afadin- and alp 51.9 1.7E+02 0.0036 29.1 10.9 59 786-844 84-146 (151)
249 PF03215 Rad17: Rad17 cell cyc 51.9 9 0.0002 45.9 2.3 31 129-159 31-63 (519)
250 PRK06547 hypothetical protein; 51.8 11 0.00025 38.4 2.7 29 131-159 5-33 (172)
251 PF13238 AAA_18: AAA domain; P 51.8 5.8 0.00012 36.6 0.5 16 144-159 1-16 (129)
252 PF07106 TBPIP: Tat binding pr 51.7 60 0.0013 32.9 7.8 64 513-580 74-137 (169)
253 PF07724 AAA_2: AAA domain (Cd 51.6 6.5 0.00014 40.1 0.9 18 142-159 4-21 (171)
254 PF14282 FlxA: FlxA-like prote 51.3 1.2E+02 0.0025 29.0 9.1 66 514-588 15-80 (106)
255 KOG0018 Structural maintenance 51.2 5.1E+02 0.011 34.1 16.8 163 551-752 724-894 (1141)
256 COG2433 Uncharacterized conser 50.9 43 0.00092 40.8 7.4 84 729-838 423-512 (652)
257 PF06048 DUF927: Domain of unk 50.6 13 0.00029 40.7 3.2 33 126-159 179-211 (286)
258 PRK10536 hypothetical protein; 50.4 8.1 0.00018 42.4 1.4 42 108-159 51-92 (262)
259 KOG0999 Microtubule-associated 50.4 75 0.0016 38.4 9.1 130 685-852 7-149 (772)
260 TIGR01241 FtsH_fam ATP-depende 50.3 6.7 0.00015 46.3 0.9 51 108-159 51-106 (495)
261 PRK11192 ATP-dependent RNA hel 50.1 9.4 0.0002 43.9 2.0 24 133-158 32-55 (434)
262 PRK13342 recombination factor 49.4 8.6 0.00019 44.3 1.5 23 137-159 32-54 (413)
263 TIGR02881 spore_V_K stage V sp 48.8 8.4 0.00018 41.4 1.3 19 141-159 42-60 (261)
264 COG1419 FlhF Flagellar GTP-bin 48.8 14 0.00031 42.9 3.1 85 122-221 180-278 (407)
265 PF15070 GOLGA2L5: Putative go 48.7 2.9E+02 0.0063 34.2 14.2 68 686-753 36-105 (617)
266 COG1223 Predicted ATPase (AAA+ 48.6 7.7 0.00017 42.9 0.9 19 141-159 151-169 (368)
267 PRK00440 rfc replication facto 48.5 13 0.00029 40.2 2.8 22 138-159 35-56 (319)
268 PRK14722 flhF flagellar biosyn 48.4 8 0.00017 44.5 1.0 19 141-159 137-155 (374)
269 TIGR02680 conserved hypothetic 48.4 7.6E+02 0.017 33.5 19.0 94 724-835 293-386 (1353)
270 PF14197 Cep57_CLD_2: Centroso 48.3 76 0.0016 28.2 6.9 64 685-755 4-67 (69)
271 PF06309 Torsin: Torsin; Inte 48.0 9.8 0.00021 37.6 1.5 15 144-158 56-70 (127)
272 PRK11388 DNA-binding transcrip 47.7 9.7 0.00021 46.3 1.7 110 108-223 321-444 (638)
273 PRK04837 ATP-dependent RNA hel 47.7 11 0.00023 43.4 1.9 24 133-158 39-62 (423)
274 PLN03025 replication factor C 46.8 15 0.00033 40.7 2.9 17 143-159 36-52 (319)
275 PF01486 K-box: K-box region; 46.0 79 0.0017 29.4 7.1 75 560-634 13-98 (100)
276 PRK10590 ATP-dependent RNA hel 46.0 13 0.00028 43.4 2.3 25 133-159 32-56 (456)
277 PF04156 IncA: IncA protein; 45.1 2.5E+02 0.0055 28.6 11.3 25 729-753 110-134 (191)
278 TIGR00348 hsdR type I site-spe 44.9 17 0.00037 44.8 3.2 31 128-159 246-281 (667)
279 PF08614 ATG16: Autophagy prot 44.8 1.5E+02 0.0033 30.8 9.7 115 684-831 79-193 (194)
280 PF05729 NACHT: NACHT domain 44.7 11 0.00023 36.3 1.1 17 143-159 2-18 (166)
281 PRK11331 5-methylcytosine-spec 44.5 15 0.00032 43.5 2.4 38 330-371 320-359 (459)
282 PF10498 IFT57: Intra-flagella 44.3 4.3E+02 0.0094 30.6 14.0 68 559-639 241-308 (359)
283 PLN03229 acetyl-coenzyme A car 44.0 7.1E+02 0.015 31.7 16.3 42 520-570 432-473 (762)
284 KOG0994 Extracellular matrix g 44.0 9.5E+02 0.021 32.2 22.8 31 806-836 1706-1736(1758)
285 KOG0995 Centromere-associated 44.0 7E+02 0.015 30.7 25.1 97 522-635 225-325 (581)
286 PF13514 AAA_27: AAA domain 43.9 9E+02 0.02 31.9 24.5 65 685-752 807-871 (1111)
287 TIGR03689 pup_AAA proteasome A 43.5 13 0.00029 44.5 1.9 17 143-159 218-234 (512)
288 PRK00771 signal recognition pa 43.1 25 0.00053 41.4 4.0 19 141-159 95-113 (437)
289 TIGR02902 spore_lonB ATP-depen 43.1 16 0.00034 43.9 2.4 42 109-158 62-103 (531)
290 cd01120 RecA-like_NTPases RecA 43.1 10 0.00022 36.0 0.7 16 144-159 2-17 (165)
291 PF14988 DUF4515: Domain of un 43.0 2.1E+02 0.0045 30.5 10.4 122 517-638 46-197 (206)
292 PF12775 AAA_7: P-loop contain 42.8 13 0.00028 40.8 1.6 19 141-159 33-51 (272)
293 PHA02244 ATPase-like protein 42.8 22 0.00049 41.1 3.5 46 109-159 92-137 (383)
294 KOG3850 Predicted membrane pro 42.8 1.4E+02 0.0031 34.7 9.5 67 552-639 254-320 (455)
295 PF08614 ATG16: Autophagy prot 42.7 1.3E+02 0.0028 31.3 8.8 27 608-634 106-132 (194)
296 smart00242 MYSc Myosin. Large 42.7 21 0.00046 44.1 3.5 38 122-159 73-110 (677)
297 PRK00080 ruvB Holliday junctio 42.6 17 0.00037 40.4 2.5 18 142-159 52-69 (328)
298 PF07058 Myosin_HC-like: Myosi 42.6 4E+02 0.0087 30.4 12.7 58 684-759 33-90 (351)
299 PRK11608 pspF phage shock prot 42.5 10 0.00022 42.4 0.8 107 111-223 5-128 (326)
300 PRK04195 replication factor C 42.4 12 0.00025 44.2 1.2 30 130-159 27-57 (482)
301 PRK10416 signal recognition pa 42.4 22 0.00047 40.0 3.3 18 142-159 115-132 (318)
302 PF05622 HOOK: HOOK protein; 42.4 8.3 0.00018 47.8 0.0 30 727-756 390-419 (713)
303 KOG0978 E3 ubiquitin ligase in 42.4 8.1E+02 0.018 31.0 21.9 64 685-755 488-551 (698)
304 PRK10884 SH3 domain-containing 42.0 1.8E+02 0.0039 31.0 9.8 55 785-839 121-175 (206)
305 PF05496 RuvB_N: Holliday junc 42.0 25 0.00055 38.1 3.5 44 115-159 23-68 (233)
306 COG3883 Uncharacterized protei 42.0 5.4E+02 0.012 28.7 19.4 29 685-713 147-175 (265)
307 smart00763 AAA_PrkA PrkA AAA d 41.8 26 0.00056 40.3 3.8 47 108-159 45-96 (361)
308 TIGR02237 recomb_radB DNA repa 41.7 14 0.0003 37.9 1.5 26 134-159 2-30 (209)
309 PF13476 AAA_23: AAA domain; P 41.5 11 0.00025 37.3 0.8 18 142-159 20-37 (202)
310 PF04880 NUDE_C: NUDE protein, 41.4 28 0.00061 35.9 3.6 46 784-833 2-47 (166)
311 TIGR01243 CDC48 AAA family ATP 41.4 13 0.00028 46.2 1.4 52 108-159 174-230 (733)
312 COG1219 ClpX ATP-dependent pro 41.2 12 0.00026 42.5 1.0 18 141-158 97-114 (408)
313 TIGR02640 gas_vesic_GvpN gas v 41.0 23 0.0005 38.3 3.1 30 128-159 10-39 (262)
314 PF00735 Septin: Septin; Inte 41.0 8.3 0.00018 42.5 -0.3 21 138-158 1-21 (281)
315 PF06818 Fez1: Fez1; InterPro 40.9 1.7E+02 0.0036 31.3 9.2 89 519-637 11-99 (202)
316 TIGR00614 recQ_fam ATP-depende 40.7 18 0.00039 42.4 2.4 26 132-159 19-44 (470)
317 PF06120 Phage_HK97_TLTM: Tail 40.3 2.8E+02 0.0061 31.4 11.4 109 514-637 51-167 (301)
318 cd01123 Rad51_DMC1_radA Rad51_ 39.9 17 0.00037 37.8 1.9 30 130-159 5-37 (235)
319 COG1201 Lhr Lhr-like helicases 39.8 18 0.0004 45.6 2.4 25 133-159 31-55 (814)
320 TIGR01618 phage_P_loop phage n 39.8 12 0.00027 39.9 0.8 19 141-159 12-30 (220)
321 PRK14974 cell division protein 39.7 31 0.00066 39.3 3.9 19 141-159 140-158 (336)
322 PRK04328 hypothetical protein; 39.4 19 0.00042 38.7 2.2 28 130-157 9-39 (249)
323 PF10236 DAP3: Mitochondrial r 39.4 22 0.00047 39.8 2.7 24 136-159 18-41 (309)
324 PRK11448 hsdR type I restricti 39.3 19 0.00042 47.0 2.5 32 126-158 419-450 (1123)
325 PF08317 Spc7: Spc7 kinetochor 39.2 5E+02 0.011 29.3 13.4 66 687-752 164-233 (325)
326 KOG3088 Secretory carrier memb 39.2 26 0.00056 39.0 3.1 23 809-831 70-92 (313)
327 PF10168 Nup88: Nuclear pore c 39.1 6.4E+02 0.014 31.9 15.3 40 712-752 630-670 (717)
328 PHA01750 hypothetical protein 38.9 47 0.001 29.4 4.0 41 545-585 28-68 (75)
329 COG0630 VirB11 Type IV secreto 38.9 20 0.00043 40.2 2.3 19 141-159 143-161 (312)
330 PRK10865 protein disaggregatio 38.7 18 0.00039 46.0 2.1 18 142-159 599-616 (857)
331 cd01384 MYSc_type_XI Myosin mo 38.7 27 0.0006 43.2 3.6 37 122-159 69-106 (674)
332 PRK11634 ATP-dependent RNA hel 38.7 17 0.00038 44.5 1.9 24 133-158 37-60 (629)
333 cd02021 GntK Gluconate kinase 38.6 13 0.00028 36.0 0.7 16 144-159 2-17 (150)
334 PF02456 Adeno_IVa2: Adenoviru 38.6 13 0.00028 42.1 0.7 15 144-158 90-104 (369)
335 cd00124 MYSc Myosin motor doma 38.3 28 0.0006 43.2 3.6 37 122-159 67-104 (679)
336 KOG4643 Uncharacterized coiled 38.2 1.1E+03 0.023 31.2 21.8 151 602-755 182-349 (1195)
337 PRK05580 primosome assembly pr 38.2 15 0.00032 45.5 1.2 18 142-159 163-180 (679)
338 cd01385 MYSc_type_IX Myosin mo 38.2 28 0.00062 43.2 3.6 37 122-159 75-112 (692)
339 KOG3859 Septins (P-loop GTPase 38.1 18 0.0004 40.3 1.8 25 135-159 36-60 (406)
340 PRK13341 recombination factor 38.1 20 0.00044 44.7 2.4 22 138-159 49-70 (725)
341 cd01383 MYSc_type_VIII Myosin 38.1 29 0.00063 43.0 3.7 37 122-159 73-110 (677)
342 TIGR00376 DNA helicase, putati 37.8 19 0.00042 44.1 2.2 17 143-159 175-191 (637)
343 PRK06067 flagellar accessory p 37.8 22 0.00048 37.3 2.4 30 130-159 11-43 (234)
344 TIGR01010 BexC_CtrB_KpsE polys 37.8 2.2E+02 0.0048 32.2 10.4 87 516-639 212-299 (362)
345 KOG0240 Kinesin (SMY1 subfamil 37.7 8.7E+02 0.019 30.0 15.7 22 687-708 478-499 (607)
346 TIGR02788 VirB11 P-type DNA tr 37.6 23 0.00049 39.4 2.5 30 129-159 133-162 (308)
347 PF03961 DUF342: Protein of un 37.5 1.2E+02 0.0027 35.5 8.6 74 560-637 335-408 (451)
348 PRK00131 aroK shikimate kinase 37.4 16 0.00034 35.8 1.1 18 142-159 5-22 (175)
349 PRK05703 flhF flagellar biosyn 37.3 14 0.00031 43.1 0.9 18 142-159 222-239 (424)
350 PRK14962 DNA polymerase III su 37.3 24 0.00051 41.9 2.7 42 110-159 12-54 (472)
351 TIGR01359 UMP_CMP_kin_fam UMP- 37.2 15 0.00032 36.7 0.9 16 144-159 2-17 (183)
352 TIGR03158 cas3_cyano CRISPR-as 37.2 21 0.00047 40.4 2.2 26 134-159 7-32 (357)
353 PRK09361 radB DNA repair and r 37.2 21 0.00046 37.1 2.0 31 129-159 8-41 (225)
354 cd01378 MYSc_type_I Myosin mot 37.0 31 0.00066 42.8 3.7 37 122-159 67-104 (674)
355 cd01382 MYSc_type_VI Myosin mo 36.9 28 0.00062 43.4 3.4 36 123-159 73-109 (717)
356 PRK04537 ATP-dependent RNA hel 36.8 20 0.00043 43.4 2.0 24 133-158 40-63 (572)
357 CHL00176 ftsH cell division pr 36.6 14 0.00031 45.4 0.7 18 142-159 217-234 (638)
358 PHA02624 large T antigen; Prov 36.6 27 0.00059 42.8 3.0 28 132-159 420-449 (647)
359 PRK09270 nucleoside triphospha 36.6 33 0.00071 36.2 3.4 37 123-159 14-51 (229)
360 cd01381 MYSc_type_VII Myosin m 36.5 33 0.00071 42.6 3.8 37 122-159 67-104 (671)
361 KOG2373 Predicted mitochondria 36.5 26 0.00057 40.2 2.7 47 131-179 261-316 (514)
362 CHL00081 chlI Mg-protoporyphyr 36.3 25 0.00054 40.2 2.6 44 108-159 13-56 (350)
363 PRK10929 putative mechanosensi 36.3 4E+02 0.0086 35.4 13.3 31 604-634 102-132 (1109)
364 TIGR01843 type_I_hlyD type I s 36.2 1.6E+02 0.0035 33.3 9.0 27 557-583 201-227 (423)
365 cd01377 MYSc_type_II Myosin mo 36.2 32 0.00069 42.8 3.6 36 122-158 72-108 (693)
366 PF13173 AAA_14: AAA domain 36.1 16 0.00036 34.8 1.0 18 142-159 3-20 (128)
367 cd01387 MYSc_type_XV Myosin mo 35.9 32 0.0007 42.6 3.6 37 122-159 68-105 (677)
368 COG1198 PriA Primosomal protei 35.8 8.5 0.00018 47.9 -1.3 47 119-188 201-247 (730)
369 cd01850 CDC_Septin CDC/Septin. 35.6 18 0.00038 39.7 1.2 22 138-159 1-22 (276)
370 PRK06995 flhF flagellar biosyn 35.2 16 0.00035 43.5 0.9 18 142-159 257-274 (484)
371 PF15035 Rootletin: Ciliary ro 35.0 4.6E+02 0.0099 27.5 11.3 113 609-752 7-119 (182)
372 PRK10917 ATP-dependent DNA hel 35.0 25 0.00054 43.4 2.5 26 134-159 275-300 (681)
373 PF10359 Fmp27_WPPW: RNA pol I 34.8 98 0.0021 36.8 7.2 62 518-583 163-224 (475)
374 TIGR00634 recN DNA repair prot 34.8 9.1E+02 0.02 29.3 16.1 176 607-843 171-365 (563)
375 cd00464 SK Shikimate kinase (S 34.7 17 0.00037 34.9 0.8 17 143-159 1-17 (154)
376 TIGR03819 heli_sec_ATPase heli 34.6 24 0.00052 40.1 2.1 30 129-159 167-196 (340)
377 PF03962 Mnd1: Mnd1 family; I 34.6 2E+02 0.0042 30.2 8.6 28 728-755 69-96 (188)
378 PRK14723 flhF flagellar biosyn 34.5 34 0.00073 43.0 3.4 18 142-159 186-203 (767)
379 PF06005 DUF904: Protein of un 34.3 1.5E+02 0.0033 26.6 6.6 38 680-717 12-49 (72)
380 KOG0926 DEAH-box RNA helicase 34.2 22 0.00048 44.6 1.8 111 516-639 793-917 (1172)
381 cd01380 MYSc_type_V Myosin mot 34.1 35 0.00076 42.4 3.5 37 122-159 67-104 (691)
382 PLN00206 DEAD-box ATP-dependen 34.0 30 0.00064 41.3 2.8 24 133-158 152-175 (518)
383 cd01127 TrwB Bacterial conjuga 33.9 17 0.00036 42.0 0.7 19 141-159 42-60 (410)
384 KOG1029 Endocytic adaptor prot 33.6 2.2E+02 0.0047 36.1 9.7 24 561-584 439-462 (1118)
385 CHL00181 cbbX CbbX; Provisiona 33.6 35 0.00077 37.7 3.1 16 144-159 62-77 (287)
386 TIGR02231 conserved hypothetic 33.5 81 0.0018 37.7 6.3 33 607-639 141-173 (525)
387 cd01428 ADK Adenylate kinase ( 33.5 19 0.0004 36.2 0.9 16 144-159 2-17 (194)
388 KOG0953 Mitochondrial RNA heli 33.3 20 0.00043 43.3 1.2 17 143-159 193-209 (700)
389 PRK05431 seryl-tRNA synthetase 33.2 1.3E+02 0.0028 35.3 7.8 67 514-591 38-105 (425)
390 cd01393 recA_like RecA is a b 33.2 30 0.00064 35.8 2.4 30 130-159 5-37 (226)
391 PF11559 ADIP: Afadin- and alp 33.2 4.9E+02 0.011 25.8 10.9 23 720-742 125-147 (151)
392 cd01126 TraG_VirD4 The TraG/Tr 33.2 22 0.00048 40.4 1.5 18 144-161 2-19 (384)
393 TIGR02030 BchI-ChlI magnesium 33.1 28 0.00062 39.5 2.4 31 129-159 13-43 (337)
394 PRK07261 topology modulation p 33.1 19 0.00041 36.4 0.9 16 144-159 3-18 (171)
395 PF07412 Geminin: Geminin; In 33.1 52 0.0011 35.0 4.0 49 685-744 124-172 (200)
396 PRK06851 hypothetical protein; 33.0 31 0.00066 39.8 2.6 28 132-159 21-48 (367)
397 PRK11889 flhF flagellar biosyn 32.8 36 0.00077 40.0 3.1 18 142-159 242-259 (436)
398 PF13555 AAA_29: P-loop contai 32.8 19 0.00042 31.3 0.7 15 144-158 26-40 (62)
399 COG5019 CDC3 Septin family pro 32.6 24 0.00052 40.6 1.6 21 138-158 20-40 (373)
400 KOG0335 ATP-dependent RNA heli 32.4 21 0.00045 42.4 1.2 22 136-159 108-129 (482)
401 COG2256 MGS1 ATPase related to 32.4 20 0.00042 41.9 0.9 28 131-158 38-65 (436)
402 TIGR02746 TraC-F-type type-IV 32.4 18 0.00039 45.0 0.7 19 141-159 430-448 (797)
403 PRK01297 ATP-dependent RNA hel 32.3 24 0.00053 41.3 1.7 27 131-159 116-142 (475)
404 PRK14961 DNA polymerase III su 32.1 35 0.00076 38.8 2.9 20 140-159 37-56 (363)
405 TIGR02880 cbbX_cfxQ probable R 32.1 19 0.0004 39.7 0.7 16 143-158 60-75 (284)
406 PRK15429 formate hydrogenlyase 32.1 25 0.00053 43.4 1.8 44 109-158 373-416 (686)
407 TIGR01650 PD_CobS cobaltochela 31.8 27 0.00059 39.6 1.9 19 141-159 64-82 (327)
408 PRK08118 topology modulation p 31.7 21 0.00045 36.1 0.9 15 144-158 4-18 (167)
409 smart00787 Spc7 Spc7 kinetocho 31.7 6E+02 0.013 28.8 12.4 67 686-752 158-228 (312)
410 cd01394 radB RadB. The archaea 31.6 31 0.00068 35.6 2.2 29 131-159 6-37 (218)
411 TIGR03752 conj_TIGR03752 integ 31.5 2.3E+02 0.0051 33.9 9.4 41 714-755 53-93 (472)
412 COG0464 SpoVK ATPases of the A 31.5 24 0.00053 41.5 1.5 21 139-159 274-294 (494)
413 TIGR01313 therm_gnt_kin carboh 31.5 17 0.00037 35.7 0.2 15 144-158 1-15 (163)
414 PF03980 Nnf1: Nnf1 ; InterPr 31.3 4.5E+02 0.0097 24.7 10.2 75 681-755 32-107 (109)
415 COG1125 OpuBA ABC-type proline 31.2 20 0.00044 39.7 0.7 13 147-159 33-45 (309)
416 TIGR01389 recQ ATP-dependent D 31.2 31 0.00066 41.7 2.3 26 132-159 21-46 (591)
417 TIGR01005 eps_transp_fam exopo 31.0 1.1E+03 0.025 29.4 16.9 177 609-836 181-364 (754)
418 PF15619 Lebercilin: Ciliary p 31.0 6.6E+02 0.014 26.6 12.8 86 531-636 95-189 (194)
419 PF07693 KAP_NTPase: KAP famil 31.0 39 0.00085 36.8 3.0 21 139-159 18-38 (325)
420 PF10481 CENP-F_N: Cenp-F N-te 31.0 6.2E+02 0.013 28.5 11.8 27 555-581 21-47 (307)
421 PRK10820 DNA-binding transcrip 30.9 25 0.00054 42.1 1.5 46 108-159 200-245 (520)
422 PF03193 DUF258: Protein of un 30.9 38 0.00083 34.7 2.6 26 132-159 28-53 (161)
423 cd01379 MYSc_type_III Myosin m 30.8 43 0.00092 41.5 3.5 36 123-159 68-104 (653)
424 cd02020 CMPK Cytidine monophos 30.7 22 0.00049 33.7 0.9 16 144-159 2-17 (147)
425 KOG4673 Transcription factor T 30.7 1.2E+03 0.026 29.5 23.8 284 505-832 329-634 (961)
426 TIGR02322 phosphon_PhnN phosph 30.5 21 0.00047 35.6 0.8 17 143-159 3-19 (179)
427 TIGR03744 traC_PFL_4706 conjug 30.1 20 0.00044 45.7 0.6 19 141-159 475-493 (893)
428 PF01166 TSC22: TSC-22/dip/bun 30.1 41 0.00089 29.1 2.2 27 686-712 14-40 (59)
429 TIGR00602 rad24 checkpoint pro 30.1 32 0.00068 42.4 2.2 17 143-159 112-128 (637)
430 PRK14721 flhF flagellar biosyn 29.9 23 0.0005 41.5 1.0 19 141-159 191-209 (420)
431 TIGR03752 conj_TIGR03752 integ 29.9 3.5E+02 0.0076 32.5 10.4 89 513-637 54-142 (472)
432 KOG1547 Septin CDC10 and relat 29.7 54 0.0012 36.1 3.6 29 130-158 34-63 (336)
433 PRK15424 propionate catabolism 29.7 28 0.00061 42.0 1.7 22 137-158 238-259 (538)
434 CHL00195 ycf46 Ycf46; Provisio 29.6 22 0.00048 42.3 0.8 18 142-159 260-277 (489)
435 PF00931 NB-ARC: NB-ARC domain 29.6 45 0.00098 35.5 3.1 31 129-159 5-37 (287)
436 PRK06696 uridine kinase; Valid 29.5 48 0.001 34.8 3.2 22 138-159 19-40 (223)
437 PF06818 Fez1: Fez1; InterPro 29.5 7.4E+02 0.016 26.6 14.5 24 731-754 83-106 (202)
438 cd01386 MYSc_type_XVIII Myosin 29.4 45 0.00097 42.1 3.4 35 123-158 68-103 (767)
439 PRK12724 flagellar biosynthesi 29.3 46 0.001 39.2 3.3 18 142-159 224-241 (432)
440 PRK10869 recombination and rep 29.3 9.8E+02 0.021 29.2 14.5 48 687-734 335-387 (553)
441 TIGR02397 dnaX_nterm DNA polym 29.3 42 0.00091 37.2 2.9 20 140-159 35-54 (355)
442 PRK14531 adenylate kinase; Pro 29.2 24 0.00053 35.8 0.9 17 143-159 4-20 (183)
443 PF10475 DUF2450: Protein of u 29.2 4.9E+02 0.011 28.8 11.1 67 564-636 33-99 (291)
444 PHA02653 RNA helicase NPH-II; 29.1 38 0.00083 42.0 2.7 25 132-158 172-196 (675)
445 TIGR03881 KaiC_arch_4 KaiC dom 29.0 38 0.00083 35.3 2.4 29 131-159 7-38 (229)
446 PRK12726 flagellar biosynthesi 28.9 24 0.00053 41.0 0.9 18 142-159 207-224 (407)
447 PRK00888 ftsB cell division pr 28.9 97 0.0021 29.5 4.8 31 684-714 32-62 (105)
448 KOG1514 Origin recognition com 28.9 39 0.00085 41.9 2.7 52 312-369 571-631 (767)
449 TIGR00643 recG ATP-dependent D 28.9 38 0.00082 41.4 2.6 20 140-159 255-274 (630)
450 KOG0651 26S proteasome regulat 28.8 37 0.0008 38.6 2.2 53 106-158 126-183 (388)
451 cd01983 Fer4_NifH The Fer4_Nif 28.7 26 0.00056 30.1 0.8 16 144-159 2-17 (99)
452 PF12774 AAA_6: Hydrolytic ATP 28.6 35 0.00076 36.7 2.0 16 144-159 35-50 (231)
453 KOG0739 AAA+-type ATPase [Post 28.6 25 0.00055 39.7 1.0 25 135-159 157-184 (439)
454 KOG1803 DNA helicase [Replicat 28.6 27 0.00058 42.5 1.2 18 142-159 202-219 (649)
455 cd01124 KaiC KaiC is a circadi 28.6 25 0.00055 34.9 0.9 16 144-159 2-17 (187)
456 PF00485 PRK: Phosphoribulokin 28.5 22 0.00048 36.4 0.5 16 144-159 2-17 (194)
457 PRK11057 ATP-dependent DNA hel 28.5 34 0.00074 41.7 2.1 25 133-159 34-58 (607)
458 TIGR00064 ftsY signal recognit 28.5 28 0.0006 38.2 1.2 18 142-159 73-90 (272)
459 TIGR02688 conserved hypothetic 28.4 38 0.00082 40.0 2.4 89 136-230 206-295 (449)
460 TIGR00763 lon ATP-dependent pr 28.4 30 0.00066 43.4 1.7 17 143-159 349-365 (775)
461 KOG0996 Structural maintenance 28.3 1.6E+03 0.035 30.2 20.0 34 606-639 322-355 (1293)
462 KOG2685 Cystoskeletal protein 28.3 2.2E+02 0.0048 33.5 8.2 76 555-638 288-371 (421)
463 PRK08233 hypothetical protein; 28.2 25 0.00054 34.8 0.8 17 143-159 5-21 (182)
464 PRK06975 bifunctional uroporph 28.2 1.2E+02 0.0026 37.6 6.7 68 520-590 348-415 (656)
465 TIGR02329 propionate_PrpR prop 28.1 29 0.00063 41.7 1.4 44 109-158 209-252 (526)
466 PRK11664 ATP-dependent RNA hel 27.8 43 0.00093 42.5 2.9 29 129-159 10-38 (812)
467 PF05529 Bap31: B-cell recepto 27.8 1.7E+02 0.0038 30.2 6.9 30 555-584 157-186 (192)
468 cd02023 UMPK Uridine monophosp 27.8 24 0.00052 36.0 0.6 16 144-159 2-17 (198)
469 PF14532 Sigma54_activ_2: Sigm 27.7 27 0.00058 33.7 0.9 72 137-221 17-95 (138)
470 TIGR01613 primase_Cterm phage/ 27.7 28 0.00062 38.4 1.2 19 140-158 75-93 (304)
471 PRK10867 signal recognition pa 27.7 58 0.0013 38.3 3.7 19 141-159 100-118 (433)
472 TIGR01360 aden_kin_iso1 adenyl 27.6 28 0.0006 34.7 1.0 17 143-159 5-21 (188)
473 PF10498 IFT57: Intra-flagella 27.6 1.1E+02 0.0025 35.2 5.9 68 515-582 277-358 (359)
474 PRK14532 adenylate kinase; Pro 27.6 29 0.00063 35.0 1.1 16 143-158 2-17 (188)
475 PRK10923 glnG nitrogen regulat 27.3 42 0.00091 38.9 2.5 85 139-223 159-260 (469)
476 TIGR01000 bacteriocin_acc bact 27.0 3.4E+02 0.0074 31.9 9.9 104 516-635 177-315 (457)
477 TIGR00580 mfd transcription-re 26.9 40 0.00088 43.3 2.4 32 128-159 459-490 (926)
478 KOG0971 Microtubule-associated 26.9 1.6E+03 0.034 29.6 32.1 52 704-755 372-430 (1243)
479 KOG0354 DEAD-box like helicase 26.7 42 0.00091 41.9 2.5 25 130-157 68-92 (746)
480 PRK01172 ski2-like helicase; P 26.7 38 0.00082 41.6 2.1 22 135-158 33-54 (674)
481 PRK06217 hypothetical protein; 26.7 28 0.0006 35.3 0.8 16 144-159 4-19 (183)
482 PRK11361 acetoacetate metaboli 26.6 47 0.001 38.2 2.8 87 137-223 162-265 (457)
483 PRK06305 DNA polymerase III su 26.5 41 0.00088 39.7 2.2 42 110-159 15-57 (451)
484 TIGR00231 small_GTP small GTP- 26.5 26 0.00057 32.2 0.6 17 143-159 3-19 (161)
485 PF01486 K-box: K-box region; 26.5 4E+02 0.0086 24.7 8.4 91 606-708 7-97 (100)
486 KOG0729 26S proteasome regulat 26.5 32 0.00069 38.3 1.3 17 142-158 212-228 (435)
487 PRK04040 adenylate kinase; Pro 26.5 29 0.00063 35.9 0.9 17 143-159 4-20 (188)
488 TIGR02173 cyt_kin_arch cytidyl 26.3 28 0.0006 34.1 0.7 17 143-159 2-18 (171)
489 PRK11034 clpA ATP-dependent Cl 26.3 47 0.001 41.8 2.8 19 141-159 488-506 (758)
490 TIGR02236 recomb_radA DNA repa 26.2 40 0.00087 37.2 2.0 29 131-159 82-113 (310)
491 TIGR00929 VirB4_CagE type IV s 26.2 27 0.00059 43.3 0.8 19 141-159 434-452 (785)
492 COG1126 GlnQ ABC-type polar am 26.1 31 0.00067 37.4 1.0 15 145-159 32-46 (240)
493 PRK00300 gmk guanylate kinase; 26.1 30 0.00066 35.2 1.0 19 141-159 5-23 (205)
494 TIGR03263 guanyl_kin guanylate 26.0 30 0.00064 34.5 0.9 18 142-159 2-19 (180)
495 TIGR01425 SRP54_euk signal rec 26.0 57 0.0012 38.4 3.3 19 141-159 100-118 (429)
496 TIGR02768 TraA_Ti Ti-type conj 26.0 40 0.00086 42.3 2.1 27 132-159 360-386 (744)
497 PRK14970 DNA polymerase III su 26.0 52 0.0011 37.1 2.9 28 132-159 29-57 (367)
498 PF07926 TPR_MLP1_2: TPR/MLP1/ 25.9 6.3E+02 0.014 24.7 10.3 30 683-712 102-131 (132)
499 KOG0924 mRNA splicing factor A 25.7 44 0.00095 41.4 2.3 20 139-158 369-388 (1042)
500 PF15619 Lebercilin: Ciliary p 25.6 8.2E+02 0.018 25.9 15.8 40 595-634 56-98 (194)
No 1
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-85 Score=762.42 Aligned_cols=327 Identities=37% Similarity=0.558 Sum_probs=296.9
Q ss_pred CCCeEEEEecCCCChhhhccCCeEEEecCCCEE-EeCCC--CCceeEeeceecCCCC-------cchhHHHHHHHHHHHH
Q 002982 66 KENVTVTVRFRPLSPREIRQGEEIAWYADGETI-LRNED--NPSIAYAYDRVFGPTT-------TTRHVYDIAAQHVVSG 135 (861)
Q Consensus 66 ~~~VkV~VRVRPl~~~E~~~g~~~~~~~d~~~i-v~~~~--~~~~~F~FD~VF~~~a-------tQeeVY~~~~~plV~~ 135 (861)
..+|+|+||||||+.+|......+++.+.|.++ +.++. +....|+||++||..+ +|..||+.++.++|+.
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~ 82 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDH 82 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHH
Confidence 467999999999999999888888887777644 33332 2345699999998654 7999999999999999
Q ss_pred hhcCCCeeEEEecccCCCCccccccCC--------------------------ccceeeEEEEEEecceeeeccC-CC-C
Q 002982 136 AMDGINGTIFAYGVTSSGKTHTMHTPN--------------------------REFLLRVSYLEIYNEVVNDLLN-PA-G 187 (861)
Q Consensus 136 vl~GyN~tIfAYGqTGSGKTyTM~g~~--------------------------~~f~V~vSylEIYnE~I~DLL~-p~-~ 187 (861)
+|+|||+||||||||||||||||+|-. ..|.|.|||||||||+|+|||+ |. +
T Consensus 83 AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~k 162 (1221)
T KOG0245|consen 83 AFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKSK 162 (1221)
T ss_pred HhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCCC
Confidence 999999999999999999999998532 3599999999999999999999 54 4
Q ss_pred CCceeeeCC-CCeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeeee
Q 002982 188 QNLRIREDS-QGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQ 266 (861)
Q Consensus 188 ~~L~Ired~-~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~Sk 266 (861)
++|+|||+| .|+||++|+.+.|+|+.|+..||+.|++.|++++|+||+.|||||+||+|++.|.......+....++|+
T Consensus 163 g~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~SK 242 (1221)
T KOG0245|consen 163 GGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKVSK 242 (1221)
T ss_pred CCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcceeeee
Confidence 689999999 6999999999999999999999999999999999999999999999999999999877776667889999
Q ss_pred eeeeecCCCCC-ccccccchhhhhhhhcccchHHHHHHHHHHhc------CCCCcccCCCCchhhhhhccCCCCccceeE
Q 002982 267 LHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTD------GRATHIPYRDSKLTRLLQSSLSGHGRVSLI 339 (861)
Q Consensus 267 L~LVDLAGSEr-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~------~k~~hIPYRDSKLTrLLqdSLGGNskT~mI 339 (861)
|+||||||||| +.+++.|+|+|||.+|||||+|||+||+||++ +++.+||||||.|||||+++|||||||+||
T Consensus 243 IsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTaMI 322 (1221)
T KOG0245|consen 243 ISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTAMI 322 (1221)
T ss_pred eeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhhhh
Confidence 99999999999 67899999999999999999999999999987 234699999999999999999999999999
Q ss_pred EeeCCCCCChHHHHHHHHHHHHccccccccccccccchHHHHHHHHHHHHHHHHH
Q 002982 340 CTVTPSSSSSEETHNTLKFAHRAKHIEILAAQNKLEDGQVKLQSRLEEEEDAKSA 394 (861)
Q Consensus 340 a~ISPs~~~~eETLsTLrFAsRAk~Ikn~~~~N~l~~~~~~l~~~Le~ee~~~~~ 394 (861)
|+|||++.||+|||+|||||+|||.|+|.|++| +|.+++|+++|++|....+.
T Consensus 323 AAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVN--EdpnaKLIRELreEv~rLks 375 (1221)
T KOG0245|consen 323 AALSPADINYEETLSTLRYADRAKQIVNNAVVN--EDPNAKLIRELREEVARLKS 375 (1221)
T ss_pred hccChhhcChHHHHHHHHHhhHhhhhhccceeC--CCccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 78999999999988654433
No 2
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.1e-83 Score=750.87 Aligned_cols=571 Identities=37% Similarity=0.472 Sum_probs=402.9
Q ss_pred CCCeEEEEecCCCChhhhccCCeEEEecCCCEEEeCCCCC-------ceeEeeceecCCCCcchhHHHHHHHHHHHHhhc
Q 002982 66 KENVTVTVRFRPLSPREIRQGEEIAWYADGETILRNEDNP-------SIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMD 138 (861)
Q Consensus 66 ~~~VkV~VRVRPl~~~E~~~g~~~~~~~d~~~iv~~~~~~-------~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~ 138 (861)
...|.|+|||||+++++...+....|...++..++..... ...|.||+||+++++|++||+..++|+|++||.
T Consensus 5 ~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~ 84 (675)
T KOG0242|consen 5 EEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLE 84 (675)
T ss_pred cceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhc
Confidence 4689999999999999777777777766555443332222 278999999999999999999999999999999
Q ss_pred CCCeeEEEecccCCCCccccccC----------------------CccceeeEEEEEEecceeeeccCCCCCCceeeeCC
Q 002982 139 GINGTIFAYGVTSSGKTHTMHTP----------------------NREFLLRVSYLEIYNEVVNDLLNPAGQNLRIREDS 196 (861)
Q Consensus 139 GyN~tIfAYGqTGSGKTyTM~g~----------------------~~~f~V~vSylEIYnE~I~DLL~p~~~~L~Ired~ 196 (861)
|||+||||||||||||||||.|. ++.|.|+|||+|||||.|+|||+|.+++|.|++|+
T Consensus 85 G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~~~L~irED~ 164 (675)
T KOG0242|consen 85 GFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDGGDLRLREDS 164 (675)
T ss_pred CcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCCCCCceEeEcC
Confidence 99999999999999999999864 33699999999999999999999999999999999
Q ss_pred C-CeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeeeeeeeeecCCC
Q 002982 197 Q-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGS 275 (861)
Q Consensus 197 ~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~SkL~LVDLAGS 275 (861)
. |++|.||+++.|.|+++++.||..|+++|+++.|.+|..|||||+||+|.|.+...... . ..++|+|||||||
T Consensus 165 ~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~----~-~~s~L~lIDLAGS 239 (675)
T KOG0242|consen 165 EGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS----S-RVSKLNLIDLAGS 239 (675)
T ss_pred CCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc----c-hhheehhhhhhhh
Confidence 7 89999999999999999999999999999999999999999999999999998754433 1 7789999999999
Q ss_pred CC-ccccccchhhhhhhhcccchHHHHHHHHHHhcC-CCCcccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHH
Q 002982 276 ES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDG-RATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETH 353 (861)
Q Consensus 276 Er-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~-k~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISPs~~~~eETL 353 (861)
|| .++++.|.|++||++||+||++||+||++|+++ ...||||||||||||||++|||||+|+|||||+|+..+|+||+
T Consensus 240 ERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~ 319 (675)
T KOG0242|consen 240 ERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETK 319 (675)
T ss_pred hhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHH
Confidence 98 678999999999999999999999999999998 4668999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccccccccccccccchHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHH
Q 002982 354 NTLKFAHRAKHIEILAAQNKLEDGQVKLQSRLEEEEDAKSAL-------------------------------LSRIQRL 402 (861)
Q Consensus 354 sTLrFAsRAk~Ikn~~~~N~l~~~~~~l~~~Le~ee~~~~~l-------------------------------~~~iq~L 402 (861)
+||+||+|||.|++.+.+|.+......++..-.+...+.+.+ ..+++.+
T Consensus 320 nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 399 (675)
T KOG0242|consen 320 NTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELERLKKKLEPEREQELLIQKLEKEEVEELLPQRSEIQSL 399 (675)
T ss_pred HHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHhhccccccchhhHHHHhHhhhhhHhhhhhhhhHHHHH
Confidence 999999999999999999986544333222201111110000 1123333
Q ss_pred HHHHHhhccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCccCCCCCCCCcccccccccccccccccccC
Q 002982 403 TKLILVSSKASQSPRVPHRPGPRRRHSFGEEEKRDSSLGPLTSTSDKSSGIKSTSTPSTPRAESINFRTESRLSQSLLTE 482 (861)
Q Consensus 403 ~~~i~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 482 (861)
.+.+..+............+...+-...+.....+ ..... +.-.+....
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~-~~~~~~~~~---- 448 (675)
T KOG0242|consen 400 VELLKRLSASRRELLSSLLSLRTELRINELDKLLD--------------------------SLLIS-TSKSRLLAQ---- 448 (675)
T ss_pred HHHHhhhccccchhhhcccchhhHHHhhhhhhhhh--------------------------hhhhh-hhhhhhhhh----
Confidence 33333222211111100000000000000000000 00000 000000000
Q ss_pred CCCcccchhhhccCCCCCCCCCCCCCCCCccccchhhHHHHHHHHHHhhhhhhhhhh-HHHHhHHHHhcCCChHHHHHHH
Q 002982 483 TSPSADLLSDARHDRGVPEDSFLGQETPSTSIKTIDQIDLLREQQKILAGEVALHSS-ALKRLSEEAARNPQKEQLQVEI 561 (861)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~dllreq~k~l~geva~~~s-~lkrl~e~a~~~p~~~~~~~~~ 561 (861)
+.....+......+.+... ..-...+.+.|.+|++.+|.++.++++++..+ .+.++.+.....|+.+...
T Consensus 449 -~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 519 (675)
T KOG0242|consen 449 -SLILELERSESSLSDLLRP-----ALELEDNEKNDKEEELKEQQSIEKEESSLSLSPLERCLLDRSNLLPELERNA--- 519 (675)
T ss_pred -hhhhhhhhhhhhhhhhhCc-----hhhhhccccchhHHHHHHHHHhhcchhcccccchhhhhhhhhcccHHHHhhH---
Confidence 0000000000000111111 11123555666999999999999999999999 6999999999999877653
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhhcccCccCcccccc------------------cccchhhhHHHHHHhHHhhhhhH
Q 002982 562 KKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQ------------------VKAADNRIIQEQLNQKICECEGL 623 (861)
Q Consensus 562 ~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~------------------ik~adnrilqeql~~k~~e~~el 623 (861)
.++.|+.+++ ++..++..+.+..+.+....+...... .+.| ..|+....+.+...++
T Consensus 520 -~~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~ 594 (675)
T KOG0242|consen 520 -IIEVESEEKS-QLKNVSELSAELKELSRELLSELSAESLEELVELIDEVIERLISESKEA---ESQEESGLKGITAKRL 594 (675)
T ss_pred -HHhhhHhHHH-HHhhhhhhhHHHHHHHHhhhcccccccchhhhhhcchhhhhhhcccccc---cccccccccccccccc
Confidence 5677777777 888888888888877665544443111 1112 2233333334445555
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcchhhhhhhhhccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhHHhHhhh
Q 002982 624 QETIGFLKQQLNDALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDINEDSRLQVQAAEIEELNRKVTELTEAKE 703 (861)
Q Consensus 624 qe~v~~l~qql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~e~e~lk~~~~~l~e~k~ 703 (861)
+.....|.++++.........+. ....++..+.+..-..+...
T Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~~~~~ 637 (675)
T KOG0242|consen 595 RSCLSSLEEKLSPIQSLQSELSS-------------------------------------LSNKITHRKLEDSDFQEDRN 637 (675)
T ss_pred ccchhhhccCcchhhhhcccCCc-------------------------------------ccccccccccccCccccccc
Confidence 55555555444322211100000 00344455555555566666
Q ss_pred hhhhhhchhhhhhhhhhhhhH
Q 002982 704 QLELRNQKLSEESSYAKGLAS 724 (861)
Q Consensus 704 ~l~~~n~kl~ee~~yak~las 724 (861)
.+..++.+.++.+|++.+.+
T Consensus 638 -~~~~~~~~~~~~~~~~~~~~ 657 (675)
T KOG0242|consen 638 -DREGNQGLQEEVSLAKSLSS 657 (675)
T ss_pred -cccCCcchhhhhcccccccc
Confidence 88999999999999999988
No 3
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.8e-83 Score=725.44 Aligned_cols=329 Identities=45% Similarity=0.623 Sum_probs=289.4
Q ss_pred CCCeEEEEecCCCChhhhccCCeEEEecCCC---EEEeCCC----CCceeEeeceecCCCCcchhHHHHHHHHHHHHhhc
Q 002982 66 KENVTVTVRFRPLSPREIRQGEEIAWYADGE---TILRNED----NPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMD 138 (861)
Q Consensus 66 ~~~VkV~VRVRPl~~~E~~~g~~~~~~~d~~---~iv~~~~----~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~ 138 (861)
..+|+|+||+||++..+...+....+..+.. ..+.++. .+.+.|+||.||+++++|++||+.++.|+|++||+
T Consensus 4 ~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~ 83 (574)
T KOG4280|consen 4 ACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLE 83 (574)
T ss_pred ccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhc
Confidence 5789999999999998877665544433322 2222222 24567999999999999999999999999999999
Q ss_pred CCCeeEEEecccCCCCccccccCC------------------------ccceeeEEEEEEecceeeeccCCCC-CCceee
Q 002982 139 GINGTIFAYGVTSSGKTHTMHTPN------------------------REFLLRVSYLEIYNEVVNDLLNPAG-QNLRIR 193 (861)
Q Consensus 139 GyN~tIfAYGqTGSGKTyTM~g~~------------------------~~f~V~vSylEIYnE~I~DLL~p~~-~~L~Ir 193 (861)
||||||||||||||||||||+|++ ..|.|+|||+|||||.|+|||++.. +.|.|+
T Consensus 84 GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~~l~lr 163 (574)
T KOG4280|consen 84 GYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNPKGLELR 163 (574)
T ss_pred ccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCcCCceee
Confidence 999999999999999999999872 1389999999999999999999987 589999
Q ss_pred eCC-CCeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeeeeeeeeec
Q 002982 194 EDS-QGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDL 272 (861)
Q Consensus 194 ed~-~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~SkL~LVDL 272 (861)
+++ .|+||+||+++.|.++++++.+|..|..+|++++|.||..|||||+||+|+|++.... ..+....+.|+|+||||
T Consensus 164 e~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~-~~~~~~~~~~rlnlvDL 242 (574)
T KOG4280|consen 164 EDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKS-DGGLMSGRSSKLNLVDL 242 (574)
T ss_pred EcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeeccc-CCCccccccceeeeeec
Confidence 999 7999999999999999999999999999999999999999999999999999983221 22445678899999999
Q ss_pred CCCCC-ccccccchhhhhhhhcccchHHHHHHHHHHhcCCCCcccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHH
Q 002982 273 AGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEE 351 (861)
Q Consensus 273 AGSEr-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISPs~~~~eE 351 (861)
||||| .+++++|.|++|+.+||+||++||+||.+|++++..||||||||||+||||||||||+|+|||||+|+..+++|
T Consensus 243 agsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~E 322 (574)
T KOG4280|consen 243 AGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEE 322 (574)
T ss_pred cchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHH
Confidence 99999 78999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002982 352 THNTLKFAHRAKHIEILAAQNKLEDGQVKLQSRLEEEEDAKSALLSRIQRLTKLIL 407 (861)
Q Consensus 352 TLsTLrFAsRAk~Ikn~~~~N~l~~~~~~l~~~Le~ee~~~~~l~~~iq~L~~~i~ 407 (861)
|++||+||+|||.|+|+|.+|+.. + +.....|..+|++|+..+-
T Consensus 323 TlsTLrfA~Rak~I~nk~~ined~--~----------~~~~~~lq~ei~~Lk~~l~ 366 (574)
T KOG4280|consen 323 TLSTLRFAQRAKAIKNKPVINEDP--K----------DALLRELQEEIERLKKELD 366 (574)
T ss_pred HHHHHHHHHHHHHhhccccccCCc--c----------hhhHHHHHHHHHHHHHhhc
Confidence 999999999999999999999643 3 2333455667777777663
No 4
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=9.4e-82 Score=742.76 Aligned_cols=331 Identities=38% Similarity=0.608 Sum_probs=286.0
Q ss_pred CCCCeEEEEecCCCChhhhccCCeEEEecCC-C--EEEeCC-CC--CceeEeeceecCCCCcchhHHHHHHHHHHHHhhc
Q 002982 65 SKENVTVTVRFRPLSPREIRQGEEIAWYADG-E--TILRNE-DN--PSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMD 138 (861)
Q Consensus 65 ~~~~VkV~VRVRPl~~~E~~~g~~~~~~~d~-~--~iv~~~-~~--~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~ 138 (861)
...||+|+|||||++.+|......+++..+| . +.+... .. -.+.|+||+||||.+.|.+||+.++.|+|..|+.
T Consensus 47 ~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~ 126 (1041)
T KOG0243|consen 47 KEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLE 126 (1041)
T ss_pred CCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHHhc
Confidence 4679999999999999999888877776665 3 233333 12 2568999999999999999999999999999999
Q ss_pred CCCeeEEEecccCCCCccccccC-----------------------------CccceeeEEEEEEecceeeeccCCCC--
Q 002982 139 GINGTIFAYGVTSSGKTHTMHTP-----------------------------NREFLLRVSYLEIYNEVVNDLLNPAG-- 187 (861)
Q Consensus 139 GyN~tIfAYGqTGSGKTyTM~g~-----------------------------~~~f~V~vSylEIYnE~I~DLL~p~~-- 187 (861)
|||||||||||||+||||||.|. +.+|+|+|||+|+|||.|+|||++..
T Consensus 127 GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~~EYsvKVSfLELYNEEl~DLLa~~~~~ 206 (1041)
T KOG0243|consen 127 GYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQGAEYSVKVSFLELYNEELTDLLASEDTS 206 (1041)
T ss_pred cCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcCCeEEEEEEehhhhhHHHHHhcCCcccc
Confidence 99999999999999999999862 34799999999999999999998764
Q ss_pred -CCceeeeCC------CCeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCc
Q 002982 188 -QNLRIREDS------QGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGE 260 (861)
Q Consensus 188 -~~L~Ired~------~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~ 260 (861)
..+.+.+++ .|++|.||.+++|.++.|++.+|.+|...|.+++|.||.+|||||+||+|+|.-...... +.+
T Consensus 207 ~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~-gee 285 (1041)
T KOG0243|consen 207 DKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPE-GEE 285 (1041)
T ss_pred ccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCc-chh
Confidence 346666665 479999999999999999999999999999999999999999999999999965433222 346
Q ss_pred eeeeeeeeeeecCCCCC-ccccccchhhhhhhhcccchHHHHHHHHHHhcCCCCcccCCCCchhhhhhccCCCCccceeE
Q 002982 261 AVNLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLI 339 (861)
Q Consensus 261 ~~~~SkL~LVDLAGSEr-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mI 339 (861)
.++.|||+||||||||. ++.|+.+.|.+|++.||+||+|||+||+||.++ ..|||||+|||||||||||||.++|+||
T Consensus 286 lvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~-s~HIPYRESKLTRLLQDSLGGkTKT~iI 364 (1041)
T KOG0243|consen 286 LVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEH-SGHIPYRESKLTRLLQDSLGGKTKTCII 364 (1041)
T ss_pred hHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHcc-CCCCCchHHHHHHHHHHHhCCCceeEEE
Confidence 78999999999999998 789998889999999999999999999999995 5899999999999999999999999999
Q ss_pred EeeCCCCCChHHHHHHHHHHHHccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002982 340 CTVTPSSSSSEETHNTLKFAHRAKHIEILAAQNKLEDGQVKLQSRLEEEEDAKSALLSRIQRLTKLILV 408 (861)
Q Consensus 340 a~ISPs~~~~eETLsTLrFAsRAk~Ikn~~~~N~l~~~~~~l~~~Le~ee~~~~~l~~~iq~L~~~i~~ 408 (861)
|||||+..+++|||+||.||.|||+|+|+|.+|..... ..+.++|-.+|.+|..-+.+
T Consensus 365 ATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K-----------~~llKd~~~EIerLK~dl~A 422 (1041)
T KOG0243|consen 365 ATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMK-----------KTLLKDLYEEIERLKRDLAA 422 (1041)
T ss_pred EEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999952211 22334444556666555543
No 5
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=2.9e-79 Score=727.23 Aligned_cols=308 Identities=39% Similarity=0.633 Sum_probs=277.9
Q ss_pred CCCCCCeEEEEecCCCChhhhccCCeEEEecCCCEEEeCCCCCceeEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCe
Q 002982 63 PSSKENVTVTVRFRPLSPREIRQGEEIAWYADGETILRNEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGING 142 (861)
Q Consensus 63 ~~~~~~VkV~VRVRPl~~~E~~~g~~~~~~~d~~~iv~~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~ 142 (861)
....++|+|+|||||++..|. +..+++..++..+.+. ...|.||+||+++++|++||+.++.|+|+.+|+|||+
T Consensus 94 ~~~ds~VkV~VRVRPl~~~E~--g~~iV~~~s~dsl~I~----~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNa 167 (1320)
T PLN03188 94 GVSDSGVKVIVRMKPLNKGEE--GEMIVQKMSNDSLTIN----GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNS 167 (1320)
T ss_pred cCCCCCeEEEEEcCCCCCccC--CCeeEEEcCCCeEEEe----CcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcc
Confidence 334679999999999998863 5556666666666654 2579999999999999999999999999999999999
Q ss_pred eEEEecccCCCCccccccCC--------------------------------------ccceeeEEEEEEecceeeeccC
Q 002982 143 TIFAYGVTSSGKTHTMHTPN--------------------------------------REFLLRVSYLEIYNEVVNDLLN 184 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~g~~--------------------------------------~~f~V~vSylEIYnE~I~DLL~ 184 (861)
||||||||||||||||+|+. ..|.|+|||+|||||.|||||+
T Consensus 168 TIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLs 247 (1320)
T PLN03188 168 SVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLD 247 (1320)
T ss_pred eeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceeccc
Confidence 99999999999999999852 1478999999999999999999
Q ss_pred CCCCCceeeeCCC-CeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceee
Q 002982 185 PAGQNLRIREDSQ-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVN 263 (861)
Q Consensus 185 p~~~~L~Ired~~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~ 263 (861)
+....|.|++|+. |+||.||+++.|.++++++.+|..|..+|++++|.||..|||||+||+|+|++.......+.....
T Consensus 248 p~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~r 327 (1320)
T PLN03188 248 PSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSFK 327 (1320)
T ss_pred cccCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCCCcceE
Confidence 9988999999985 699999999999999999999999999999999999999999999999999875433333334567
Q ss_pred eeeeeeeecCCCCC-ccccccchhhhhhhhcccchHHHHHHHHHHhc----CCCCcccCCCCchhhhhhccCCCCcccee
Q 002982 264 LSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTD----GRATHIPYRDSKLTRLLQSSLSGHGRVSL 338 (861)
Q Consensus 264 ~SkL~LVDLAGSEr-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~----~k~~hIPYRDSKLTrLLqdSLGGNskT~m 338 (861)
.|+|+||||||||| .++++.|.+++|+.+||+||++||+||.+|+. ++..||||||||||+||||+|||||+|+|
T Consensus 328 ~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTvM 407 (1320)
T PLN03188 328 TSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAM 407 (1320)
T ss_pred EEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEEE
Confidence 89999999999999 46789999999999999999999999999985 45679999999999999999999999999
Q ss_pred EEeeCCCCCChHHHHHHHHHHHHccccccccccccccc
Q 002982 339 ICTVTPSSSSSEETHNTLKFAHRAKHIEILAAQNKLED 376 (861)
Q Consensus 339 Ia~ISPs~~~~eETLsTLrFAsRAk~Ikn~~~~N~l~~ 376 (861)
||||||+..+++||++||+||+|||.|+|.|.+|....
T Consensus 408 Ia~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~ 445 (1320)
T PLN03188 408 VCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQ 445 (1320)
T ss_pred EEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchh
Confidence 99999999999999999999999999999999997543
No 6
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.4e-78 Score=676.74 Aligned_cols=337 Identities=41% Similarity=0.618 Sum_probs=301.5
Q ss_pred CCCCeEEEEecCCCChhhhccCCeEEEecCC--CEEEeCCCCCceeEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCe
Q 002982 65 SKENVTVTVRFRPLSPREIRQGEEIAWYADG--ETILRNEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGING 142 (861)
Q Consensus 65 ~~~~VkV~VRVRPl~~~E~~~g~~~~~~~d~--~~iv~~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~ 142 (861)
..++|+|+||+||++..|...+...+..+.+ .+++....+....|.||+||.|+++|++||..++.|+|++||.|||+
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNG 84 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTKETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNG 84 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecccccccceeeeecCCCccHHHHHHHHHHHHHHHHhcccce
Confidence 3588999999999999999888765554433 45555444445789999999999999999999999999999999999
Q ss_pred eEEEecccCCCCccccccCCc--------------------------cceeeEEEEEEecceeeeccCCCCCCceeeeCC
Q 002982 143 TIFAYGVTSSGKTHTMHTPNR--------------------------EFLLRVSYLEIYNEVVNDLLNPAGQNLRIREDS 196 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~g~~~--------------------------~f~V~vSylEIYnE~I~DLL~p~~~~L~Ired~ 196 (861)
||||||||||||||||.|.+. +|+|.|||||||+|+|+|||+|.+.++.|++|.
T Consensus 85 TvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~nlsvheDK 164 (607)
T KOG0240|consen 85 TVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKTNLSVHEDK 164 (607)
T ss_pred eEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccCCceeeccc
Confidence 999999999999999986533 589999999999999999999999999999996
Q ss_pred C-CeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeeeeeeeeecCCC
Q 002982 197 Q-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGS 275 (861)
Q Consensus 197 ~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~SkL~LVDLAGS 275 (861)
+ ++||.|+++..|.++++++++++.|..+|+++.|+||.+|||||+||+|+|.|.. ......+.|+|+|||||||
T Consensus 165 ~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n----~e~~~~~~gkLyLVDLaGS 240 (607)
T KOG0240|consen 165 NRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQEN----VEDKRKLSGKLYLVDLAGS 240 (607)
T ss_pred CCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEecc----ccchhhccccEEEEEcccc
Confidence 4 6899999999999999999999999999999999999999999999999999864 3335588999999999999
Q ss_pred CC-ccccccchhhhhhhhcccchHHHHHHHHHHhcCCCCcccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHHH
Q 002982 276 ES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETHN 354 (861)
Q Consensus 276 Er-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISPs~~~~eETLs 354 (861)
|+ +|+++.|.-+.|+++||+||.|||+||++|++|+..|||||||||||||||+|||||+|.||+|++|+..+..||.+
T Consensus 241 EkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~S 320 (607)
T KOG0240|consen 241 EKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKS 320 (607)
T ss_pred cccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCcccccccccc
Confidence 98 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002982 355 TLKFAHRAKHIEILAAQNKLEDGQVKLQSRLEEEEDAKSALLSRIQRLTKLI 406 (861)
Q Consensus 355 TLrFAsRAk~Ikn~~~~N~l~~~~~~l~~~Le~ee~~~~~l~~~iq~L~~~i 406 (861)
||+|++|||.|+|.+.+|... ......+.++.+.+...++.+.++.+...+
T Consensus 321 Tl~fg~rak~ikN~v~~n~e~-~~e~~~r~~e~~kd~~~~~~~~~~~~~~sl 371 (607)
T KOG0240|consen 321 TLRFGNRAKTIKNTVWVNLEL-TAEEWKRKLEKKKDKNVALKEELEKLRNSL 371 (607)
T ss_pred chhhccccccccchhhhhhHh-hHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999999999633 233456677777777777777777665443
No 7
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=3.6e-76 Score=646.16 Aligned_cols=296 Identities=44% Similarity=0.655 Sum_probs=264.7
Q ss_pred CCeEEEEecCCCChhhhccCCeEEE-ecCCCEEEeCCCCCceeEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEE
Q 002982 67 ENVTVTVRFRPLSPREIRQGEEIAW-YADGETILRNEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIF 145 (861)
Q Consensus 67 ~~VkV~VRVRPl~~~E~~~g~~~~~-~~d~~~iv~~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIf 145 (861)
++|+|+|||||+...|...+...++ ..+++.++.... +.+.|.||+||+++++|++||+.++.|+|+.+|+|||+|||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~-~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~ 79 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSH-PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIF 79 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCC-CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeEE
Confidence 4799999999999999765554443 334445544433 36789999999999999999999999999999999999999
Q ss_pred EecccCCCCccccccCC-----------------------------------ccceeeEEEEEEecceeeeccCCCCCCc
Q 002982 146 AYGVTSSGKTHTMHTPN-----------------------------------REFLLRVSYLEIYNEVVNDLLNPAGQNL 190 (861)
Q Consensus 146 AYGqTGSGKTyTM~g~~-----------------------------------~~f~V~vSylEIYnE~I~DLL~p~~~~L 190 (861)
|||||||||||||+|+. ..|.|+|||+|||||+|||||++....+
T Consensus 80 aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~~~l 159 (337)
T cd01373 80 AYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTSRNL 159 (337)
T ss_pred EeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCCCCc
Confidence 99999999999999742 1368999999999999999999988899
Q ss_pred eeeeCCC-CeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeeeeeee
Q 002982 191 RIREDSQ-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHL 269 (861)
Q Consensus 191 ~Ired~~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~SkL~L 269 (861)
.+++++. |++|.|++++.|.+++|++++|..|..+|++++|.+|..|||||+||+|+|.+...... ......|+|+|
T Consensus 160 ~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~--~~~~~~s~l~~ 237 (337)
T cd01373 160 KIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKAS--STNIRTSRLNL 237 (337)
T ss_pred eEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCC--CCcEEEEEEEE
Confidence 9999985 69999999999999999999999999999999999999999999999999987643222 22467899999
Q ss_pred eecCCCCC-ccccccchhhhhhhhcccchHHHHHHHHHHhc---CCCCcccCCCCchhhhhhccCCCCccceeEEeeCCC
Q 002982 270 IDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTD---GRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPS 345 (861)
Q Consensus 270 VDLAGSEr-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~---~k~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISPs 345 (861)
|||||||| .++++.|.+++|+.+||+||++|++||.+|++ ++..||||||||||+||||+|||||+|+|||||+|+
T Consensus 238 VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~vsP~ 317 (337)
T cd01373 238 VDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPS 317 (337)
T ss_pred EECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEEECCC
Confidence 99999999 45678999999999999999999999999985 346899999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcccc
Q 002982 346 SSSSEETHNTLKFAHRAKHI 365 (861)
Q Consensus 346 ~~~~eETLsTLrFAsRAk~I 365 (861)
..+++||++||+||.|||+|
T Consensus 318 ~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 318 SKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred cccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999987
No 8
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=3e-75 Score=639.10 Aligned_cols=297 Identities=44% Similarity=0.717 Sum_probs=269.2
Q ss_pred CeEEEEecCCCChhhhccCCeEEE-ecCCCEEEeCCCC-------------CceeEeeceecCCCCcchhHHHHHHHHHH
Q 002982 68 NVTVTVRFRPLSPREIRQGEEIAW-YADGETILRNEDN-------------PSIAYAYDRVFGPTTTTRHVYDIAAQHVV 133 (861)
Q Consensus 68 ~VkV~VRVRPl~~~E~~~g~~~~~-~~d~~~iv~~~~~-------------~~~~F~FD~VF~~~atQeeVY~~~~~plV 133 (861)
+|+|+|||||+++.|...+...++ ..++.+++..+.. ....|.||+||+++++|++||+.++.|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 599999999999999877766554 4455555554332 24689999999999999999999999999
Q ss_pred HHhhcCCCeeEEEecccCCCCccccccC-----------------------CccceeeEEEEEEecceeeeccCCCCCCc
Q 002982 134 SGAMDGINGTIFAYGVTSSGKTHTMHTP-----------------------NREFLLRVSYLEIYNEVVNDLLNPAGQNL 190 (861)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM~g~-----------------------~~~f~V~vSylEIYnE~I~DLL~p~~~~L 190 (861)
+++++|||+||||||||||||||||+|+ +..|.|+|||+|||||+|+|||++...++
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~l 160 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSSGPL 160 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCCCCCc
Confidence 9999999999999999999999999874 34688999999999999999999988899
Q ss_pred eeeeCC-CCeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeeeeeee
Q 002982 191 RIREDS-QGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHL 269 (861)
Q Consensus 191 ~Ired~-~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~SkL~L 269 (861)
.|++|+ +|++|.|++++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+.....+ .......|+|+|
T Consensus 161 ~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~-~~~~~~~s~l~~ 239 (338)
T cd01370 161 ELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTAS-INQQVRIGKLSL 239 (338)
T ss_pred eEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCC-CCCcEEEEEEEE
Confidence 999999 569999999999999999999999999999999999999999999999999998764432 234578899999
Q ss_pred eecCCCCC-ccccccchhhhhhhhcccchHHHHHHHHHHhcCC--CCcccCCCCchhhhhhccCCCCccceeEEeeCCCC
Q 002982 270 IDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGR--ATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSS 346 (861)
Q Consensus 270 VDLAGSEr-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~k--~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISPs~ 346 (861)
|||||||| .+++..|.+++|+.+||+||++|++||.+|+.+. ..||||||||||+||+|+|||||+|+|||||||+.
T Consensus 240 VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~ 319 (338)
T cd01370 240 IDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSS 319 (338)
T ss_pred EECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCch
Confidence 99999999 5677899999999999999999999999999876 38999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcccc
Q 002982 347 SSSEETHNTLKFAHRAKHI 365 (861)
Q Consensus 347 ~~~eETLsTLrFAsRAk~I 365 (861)
.+++||++||+||+|||+|
T Consensus 320 ~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 320 SHYEETHNTLKYANRAKNI 338 (338)
T ss_pred hhHHHHHHHHHHHHHhccC
Confidence 9999999999999999987
No 9
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=9e-76 Score=668.67 Aligned_cols=321 Identities=41% Similarity=0.620 Sum_probs=293.2
Q ss_pred CCCeEEEEecCCCChhhhccCCeEEEecCCCEEEeCCC---------CCceeEeeceecCCCC-------cchhHHHHHH
Q 002982 66 KENVTVTVRFRPLSPREIRQGEEIAWYADGETILRNED---------NPSIAYAYDRVFGPTT-------TTRHVYDIAA 129 (861)
Q Consensus 66 ~~~VkV~VRVRPl~~~E~~~g~~~~~~~d~~~iv~~~~---------~~~~~F~FD~VF~~~a-------tQeeVY~~~~ 129 (861)
..+|+|+|||||++.+|+.....+++..++...+.+.. ++.++|.||++|++.+ .|+.||+.++
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 56899999999999999998888888777765554433 4567999999998754 6999999999
Q ss_pred HHHHHHhhcCCCeeEEEecccCCCCcccccc------------------------CCccceeeEEEEEEecceeeeccCC
Q 002982 130 QHVVSGAMDGINGTIFAYGVTSSGKTHTMHT------------------------PNREFLLRVSYLEIYNEVVNDLLNP 185 (861)
Q Consensus 130 ~plV~~vl~GyN~tIfAYGqTGSGKTyTM~g------------------------~~~~f~V~vSylEIYnE~I~DLL~p 185 (861)
..+|+.+|+|||+||||||||||||||||+| +...|.|.|||+|||||++||||+|
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdP 162 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDP 162 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCC
Confidence 9999999999999999999999999999984 3446999999999999999999998
Q ss_pred CC--CCceeeeCC-CCeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCcee
Q 002982 186 AG--QNLRIREDS-QGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAV 262 (861)
Q Consensus 186 ~~--~~L~Ired~-~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~ 262 (861)
.. +.|+++++. -|+||.||+...|.|++|+-.+|..|+++|++++|+||..|||||+||.|.|+|.-.+...+....
T Consensus 163 k~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~Sge 242 (1714)
T KOG0241|consen 163 KGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGE 242 (1714)
T ss_pred CCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcchh
Confidence 75 679999998 699999999999999999999999999999999999999999999999999999887777777777
Q ss_pred eeeeeeeeecCCCCC-ccccccchhhhhhhhcccchHHHHHHHHHHhc-----CCCCcccCCCCchhhhhhccCCCCccc
Q 002982 263 NLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTD-----GRATHIPYRDSKLTRLLQSSLSGHGRV 336 (861)
Q Consensus 263 ~~SkL~LVDLAGSEr-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~-----~k~~hIPYRDSKLTrLLqdSLGGNskT 336 (861)
+.|+|.||||||||| .++++.|.|++||++||+||++||.||++|++ |+..+||||||.|||||||+|||||+|
T Consensus 243 KvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrT 322 (1714)
T KOG0241|consen 243 KVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRT 322 (1714)
T ss_pred heeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCcee
Confidence 899999999999999 78999999999999999999999999999987 346799999999999999999999999
Q ss_pred eeEEeeCCCCCChHHHHHHHHHHHHccccccccccccccchHHHHHHHHHHH
Q 002982 337 SLICTVTPSSSSSEETHNTLKFAHRAKHIEILAAQNKLEDGQVKLQSRLEEE 388 (861)
Q Consensus 337 ~mIa~ISPs~~~~eETLsTLrFAsRAk~Ikn~~~~N~l~~~~~~l~~~Le~e 388 (861)
+||+||||++.+|+|||+|||||.|||+|+|.+.+| ++++++.+++|.+|
T Consensus 323 vMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvN--edpnarvirElReE 372 (1714)
T KOG0241|consen 323 VMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVN--EDPNARVIRELREE 372 (1714)
T ss_pred EEEEEecccccchHHHHHHHHHHHHHHHhhcccccc--CCchHHHHHHHHHH
Confidence 999999999999999999999999999999999999 56666777666544
No 10
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=1.3e-73 Score=627.84 Aligned_cols=297 Identities=38% Similarity=0.611 Sum_probs=263.7
Q ss_pred CCeEEEEecCCCChhhhccCCeEEE-ecCCCEEEeCCCC-------------CceeEeeceecCCCCcchhHHHHHHHHH
Q 002982 67 ENVTVTVRFRPLSPREIRQGEEIAW-YADGETILRNEDN-------------PSIAYAYDRVFGPTTTTRHVYDIAAQHV 132 (861)
Q Consensus 67 ~~VkV~VRVRPl~~~E~~~g~~~~~-~~d~~~iv~~~~~-------------~~~~F~FD~VF~~~atQeeVY~~~~~pl 132 (861)
.+|+|+|||||+.+.|...+...++ ..++.+++...+. ....|.||+||+++++|++||+.++.|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~ 80 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPL 80 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHH
Confidence 4799999999999998766554333 4555555544321 3568999999999999999999999999
Q ss_pred HHHhhcCCCeeEEEecccCCCCccccccCCc-----------------cceeeEEEEEEecceeeeccCCCC------CC
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTMHTPNR-----------------EFLLRVSYLEIYNEVVNDLLNPAG------QN 189 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM~g~~~-----------------~f~V~vSylEIYnE~I~DLL~p~~------~~ 189 (861)
|+++++|||+||||||||||||||||+|+.. .|.|+|||+|||||+|+|||++.. +.
T Consensus 81 v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~~~v~~S~~EIyne~v~DLL~~~~~~~~~~~~ 160 (345)
T cd01368 81 VQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGGYSVFVSYVEIYNNYIYDLLEDSPSSTKKRQS 160 (345)
T ss_pred HHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHheeEEEEEEEEeCCEeEeCCCCccccccCCCc
Confidence 9999999999999999999999999998653 278999999999999999998754 36
Q ss_pred ceeeeCCC-CeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCC----CCceeee
Q 002982 190 LRIREDSQ-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENS----AGEAVNL 264 (861)
Q Consensus 190 L~Ired~~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~----~~~~~~~ 264 (861)
+.|++|+. |++|.|++++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+....... .......
T Consensus 161 l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~ 240 (345)
T cd01368 161 LRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDKDQITV 240 (345)
T ss_pred eEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCCCceEE
Confidence 99999995 589999999999999999999999999999999999999999999999999876543211 2345778
Q ss_pred eeeeeeecCCCCC-ccccccchhhhhhhhcccchHHHHHHHHHHhcC-----CCCcccCCCCchhhhhhccCCCCcccee
Q 002982 265 SQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDG-----RATHIPYRDSKLTRLLQSSLSGHGRVSL 338 (861)
Q Consensus 265 SkL~LVDLAGSEr-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~-----k~~hIPYRDSKLTrLLqdSLGGNskT~m 338 (861)
|+|+||||||||| .++++.|.+++|+.+||+||++|++||.+|++. +..||||||||||+||||+|||||+|+|
T Consensus 241 s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~s~t~~ 320 (345)
T cd01368 241 SQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGEGKARM 320 (345)
T ss_pred EEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCCCeEEE
Confidence 9999999999999 567899999999999999999999999999873 4689999999999999999999999999
Q ss_pred EEeeCCCCCChHHHHHHHHHHHHcc
Q 002982 339 ICTVTPSSSSSEETHNTLKFAHRAK 363 (861)
Q Consensus 339 Ia~ISPs~~~~eETLsTLrFAsRAk 363 (861)
|+||||+..+++||++||+||.+|+
T Consensus 321 I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 321 IVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred EEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999985
No 11
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=1.7e-73 Score=628.84 Aligned_cols=306 Identities=39% Similarity=0.589 Sum_probs=277.3
Q ss_pred CCeEEEEecCCCChhhhccCCeEEEecCCCEEEeCCC-------CCceeEeeceecCCC-------CcchhHHHHHHHHH
Q 002982 67 ENVTVTVRFRPLSPREIRQGEEIAWYADGETILRNED-------NPSIAYAYDRVFGPT-------TTTRHVYDIAAQHV 132 (861)
Q Consensus 67 ~~VkV~VRVRPl~~~E~~~g~~~~~~~d~~~iv~~~~-------~~~~~F~FD~VF~~~-------atQeeVY~~~~~pl 132 (861)
++|+|+|||||++..|...+...++..++..+.+..+ .....|.||+||++. ++|++||+.++.|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~ 80 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGREL 80 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHH
Confidence 4799999999999999888887666655565544333 245789999999999 99999999999999
Q ss_pred HHHhhcCCCeeEEEecccCCCCccccccCC------------------------ccceeeEEEEEEecceeeeccCCCC-
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTMHTPN------------------------REFLLRVSYLEIYNEVVNDLLNPAG- 187 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM~g~~------------------------~~f~V~vSylEIYnE~I~DLL~p~~- 187 (861)
|+++++|||+||||||||||||||||+|+. ..|.|+|||+|||||+|||||++..
T Consensus 81 v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~ 160 (356)
T cd01365 81 LDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKK 160 (356)
T ss_pred HHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCcc
Confidence 999999999999999999999999998652 3588999999999999999999874
Q ss_pred --CCceeeeCC-CCeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeee
Q 002982 188 --QNLRIREDS-QGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNL 264 (861)
Q Consensus 188 --~~L~Ired~-~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~ 264 (861)
..+.+++++ .|++|.|++++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+..............
T Consensus 161 ~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~~ 240 (356)
T cd01365 161 NKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEKV 240 (356)
T ss_pred CCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceEE
Confidence 689999998 47999999999999999999999999999999999999999999999999999876554434556788
Q ss_pred eeeeeeecCCCCC-ccccccchhhhhhhhcccchHHHHHHHHHHhcC-------CCCcccCCCCchhhhhhccCCCCccc
Q 002982 265 SQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDG-------RATHIPYRDSKLTRLLQSSLSGHGRV 336 (861)
Q Consensus 265 SkL~LVDLAGSEr-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~-------k~~hIPYRDSKLTrLLqdSLGGNskT 336 (861)
|+|+||||||||+ .+.+..|.+++|+.+||+||++|++||.+|+.+ +..||||||||||+||+|+||||++|
T Consensus 241 s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t 320 (356)
T cd01365 241 SKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKT 320 (356)
T ss_pred EEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCceE
Confidence 9999999999999 456788999999999999999999999999874 35899999999999999999999999
Q ss_pred eeEEeeCCCCCChHHHHHHHHHHHHccccccccccc
Q 002982 337 SLICTVTPSSSSSEETHNTLKFAHRAKHIEILAAQN 372 (861)
Q Consensus 337 ~mIa~ISPs~~~~eETLsTLrFAsRAk~Ikn~~~~N 372 (861)
+||+||+|...+++||++||+||+|+++|+|.|++|
T Consensus 321 ~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 321 AMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 999999999999999999999999999999999886
No 12
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=1.3e-71 Score=612.51 Aligned_cols=305 Identities=40% Similarity=0.627 Sum_probs=273.1
Q ss_pred CCeEEEEecCCCChhhhccCCeEEEec--CCCEEEeCCCC----CceeEeeceecCCCCcchhHHHHHHHHHHHHhhcCC
Q 002982 67 ENVTVTVRFRPLSPREIRQGEEIAWYA--DGETILRNEDN----PSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGI 140 (861)
Q Consensus 67 ~~VkV~VRVRPl~~~E~~~g~~~~~~~--d~~~iv~~~~~----~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~Gy 140 (861)
.+|+|+|||||+...|...+...++.. ++..+...... ....|.||+||+++++|++||+.++.|+|+++++||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~ 81 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGY 81 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 589999999999999977665544433 33555544432 467899999999999999999999999999999999
Q ss_pred CeeEEEecccCCCCccccccCC--------------------------------ccceeeEEEEEEecceeeeccCCC--
Q 002982 141 NGTIFAYGVTSSGKTHTMHTPN--------------------------------REFLLRVSYLEIYNEVVNDLLNPA-- 186 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~g~~--------------------------------~~f~V~vSylEIYnE~I~DLL~p~-- 186 (861)
|+||||||||||||||||+|+. ..|.|+|||+|||||.|+|||++.
T Consensus 82 n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~ 161 (352)
T cd01364 82 NCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQNTEYSVKVSYLELYNEELFDLLSSESD 161 (352)
T ss_pred eEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhccceeEEEEEEEEeeCCeeeeCCCCccc
Confidence 9999999999999999999752 257899999999999999999987
Q ss_pred -CCCceeeeC---CCCeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCcee
Q 002982 187 -GQNLRIRED---SQGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAV 262 (861)
Q Consensus 187 -~~~L~Ired---~~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~ 262 (861)
..++.++++ ..|++|.|++++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+...... .....
T Consensus 162 ~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~-~~~~~ 240 (352)
T cd01364 162 LNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTIS-GEELV 240 (352)
T ss_pred cCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCC-CCccE
Confidence 568999999 3679999999999999999999999999999999999999999999999999987654322 23446
Q ss_pred eeeeeeeeecCCCCC-ccccccchhhhhhhhcccchHHHHHHHHHHhcCCCCcccCCCCchhhhhhccCCCCccceeEEe
Q 002982 263 NLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICT 341 (861)
Q Consensus 263 ~~SkL~LVDLAGSEr-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ 341 (861)
..|+|+||||||+|+ .+.++.+.+++|+..||+||++|++||.+|+.+. .|||||+||||+||+|+|||||+|+||+|
T Consensus 241 ~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~-~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~ 319 (352)
T cd01364 241 KIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKS-PHIPYRESKLTRLLQDSLGGRTKTSIIAT 319 (352)
T ss_pred EEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCC-CCCCCcccHHHHHHHHhcCCCceEEEEEE
Confidence 789999999999998 5677889999999999999999999999999864 89999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHHHcccccccccccc
Q 002982 342 VTPSSSSSEETHNTLKFAHRAKHIEILAAQNK 373 (861)
Q Consensus 342 ISPs~~~~eETLsTLrFAsRAk~Ikn~~~~N~ 373 (861)
|+|+..+++||++||+||+||++|+|.|.+|.
T Consensus 320 vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 320 ISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred eCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 99999999999999999999999999999984
No 13
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=3.1e-71 Score=603.35 Aligned_cols=295 Identities=46% Similarity=0.721 Sum_probs=271.3
Q ss_pred CCeEEEEecCCCChhhhccCCe-EEEecCCCEEEeCCCCCceeEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEE
Q 002982 67 ENVTVTVRFRPLSPREIRQGEE-IAWYADGETILRNEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIF 145 (861)
Q Consensus 67 ~~VkV~VRVRPl~~~E~~~g~~-~~~~~d~~~iv~~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIf 145 (861)
++|+|+|||||++..|...+.. ++...++.++.+.+......|.||+||+++++|++||+.++.|+|+.+++|||+|||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i~ 81 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSDDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIF 81 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceEE
Confidence 5899999999999999665554 444555567777766677899999999999999999999999999999999999999
Q ss_pred EecccCCCCccccccCCc--------------------------cceeeEEEEEEecceeeeccCCCCCCceeeeCC-CC
Q 002982 146 AYGVTSSGKTHTMHTPNR--------------------------EFLLRVSYLEIYNEVVNDLLNPAGQNLRIREDS-QG 198 (861)
Q Consensus 146 AYGqTGSGKTyTM~g~~~--------------------------~f~V~vSylEIYnE~I~DLL~p~~~~L~Ired~-~G 198 (861)
|||||||||||||+|+.. +|.|+|||+|||||.|+|||++....+.+++++ .|
T Consensus 82 ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~~~ 161 (325)
T cd01369 82 AYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKDNLQVHEDKNRG 161 (325)
T ss_pred EeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccCCceEEEcCCCC
Confidence 999999999999987644 488999999999999999999988899999998 57
Q ss_pred eEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeeeeeeeeecCCCCC-
Q 002982 199 TFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGSES- 277 (861)
Q Consensus 199 ~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~SkL~LVDLAGSEr- 277 (861)
++|.|++++.|.|+++++.+|..|.++|++++|.+|..|||||+||+|+|.+.... ......|+|+||||||+|+
T Consensus 162 ~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~----~~~~~~s~l~~VDLAGsE~~ 237 (325)
T cd01369 162 VYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVE----TGSKKRGKLFLVDLAGSEKV 237 (325)
T ss_pred EEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecC----CCCEEEEEEEEEECCCCCcc
Confidence 99999999999999999999999999999999999999999999999999876432 2346789999999999999
Q ss_pred ccccccchhhhhhhhcccchHHHHHHHHHHhcCCCCcccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHHHHHH
Q 002982 278 SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETHNTLK 357 (861)
Q Consensus 278 ~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISPs~~~~eETLsTLr 357 (861)
.+.+..|.+++|+..||+||++|++||.+|+.++..|||||||+||+||+|+|||||+|+||+||+|+..+++||++||+
T Consensus 238 ~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~ 317 (325)
T cd01369 238 SKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLR 317 (325)
T ss_pred cccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHH
Confidence 56788999999999999999999999999999877899999999999999999999999999999999999999999999
Q ss_pred HHHHcccc
Q 002982 358 FAHRAKHI 365 (861)
Q Consensus 358 FAsRAk~I 365 (861)
||+|||+|
T Consensus 318 ~a~r~~~i 325 (325)
T cd01369 318 FGARAKTI 325 (325)
T ss_pred HHHHhhcC
Confidence 99999987
No 14
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=3.8e-71 Score=605.25 Aligned_cols=298 Identities=45% Similarity=0.697 Sum_probs=268.1
Q ss_pred CCeEEEEecCCCChhhhccCCeEEEe--cCCCEEEeCCC-----CCceeEeeceecCCCCcchhHHHHHHHHHHHHhhcC
Q 002982 67 ENVTVTVRFRPLSPREIRQGEEIAWY--ADGETILRNED-----NPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDG 139 (861)
Q Consensus 67 ~~VkV~VRVRPl~~~E~~~g~~~~~~--~d~~~iv~~~~-----~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~G 139 (861)
++|+|+|||||+++.|...+...++. ++...+.+..+ ...+.|.||+||+++++|++||+.++.|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCC
Confidence 47999999999999998776654433 33444444332 245789999999999999999999999999999999
Q ss_pred CCeeEEEecccCCCCccccccCCc-------------------------cceeeEEEEEEecceeeeccCCCC-CCceee
Q 002982 140 INGTIFAYGVTSSGKTHTMHTPNR-------------------------EFLLRVSYLEIYNEVVNDLLNPAG-QNLRIR 193 (861)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM~g~~~-------------------------~f~V~vSylEIYnE~I~DLL~p~~-~~L~Ir 193 (861)
||+||||||||||||||||+|+.. .|.|+|||+|||||.|+|||.+.. ..+.++
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~i~ 160 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQKKKLELK 160 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCCCCceeEE
Confidence 999999999999999999997543 578999999999999999999876 689999
Q ss_pred eCCC-CeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeeeeeeeeec
Q 002982 194 EDSQ-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDL 272 (861)
Q Consensus 194 ed~~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~SkL~LVDL 272 (861)
+++. |++|.|++++.|.+++++..+|..|.++|.+++|.+|..|||||+||+|+|++...... ....+..|+|+||||
T Consensus 161 ~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~-~~~~~~~s~L~~VDL 239 (333)
T cd01371 161 ERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGED-GENHIRVGKLNLVDL 239 (333)
T ss_pred EcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCC-CCCcEEEEEEEEEEC
Confidence 9986 79999999999999999999999999999999999999999999999999998755432 234577899999999
Q ss_pred CCCCC-ccccccchhhhhhhhcccchHHHHHHHHHHhcCCCCcccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHH
Q 002982 273 AGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEE 351 (861)
Q Consensus 273 AGSEr-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISPs~~~~eE 351 (861)
||||+ .+++..|.+++|+..||+||.+|++||.+|+.++..||||||||||+||+|+|||||+|+||+||+|...+++|
T Consensus 240 AGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~e 319 (333)
T cd01371 240 AGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDE 319 (333)
T ss_pred CCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHHH
Confidence 99999 56778899999999999999999999999999887899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcccc
Q 002982 352 THNTLKFAHRAKHI 365 (861)
Q Consensus 352 TLsTLrFAsRAk~I 365 (861)
|++||+||+|||+|
T Consensus 320 Tl~TL~fa~r~r~I 333 (333)
T cd01371 320 TLSTLRYANRAKNI 333 (333)
T ss_pred HHHHHHHHHHhhcC
Confidence 99999999999987
No 15
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=5.7e-71 Score=600.57 Aligned_cols=296 Identities=60% Similarity=0.929 Sum_probs=268.9
Q ss_pred CeEEEEecCCCChhhhccCCeEEEe-cCCCEEEeCCCCCceeEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEE
Q 002982 68 NVTVTVRFRPLSPREIRQGEEIAWY-ADGETILRNEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFA 146 (861)
Q Consensus 68 ~VkV~VRVRPl~~~E~~~g~~~~~~-~d~~~iv~~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfA 146 (861)
+|+|+|||||+...|.. +...+|. .++.+++..++.....|.||+||+++++|++||+.++.|+|+++++|||+||||
T Consensus 1 ~V~V~vRvRP~~~~e~~-~~~~~~~~~~~~~v~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~a 79 (321)
T cd01374 1 KIKVSVRVRPLNPRESD-NEQVAWSIDNDNTISLEESTPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFA 79 (321)
T ss_pred CeEEEEEcCcCCccccc-CCcceEEECCCCEEEEcCCCCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEEe
Confidence 59999999999999884 3444444 444477777667778999999999999999999999999999999999999999
Q ss_pred ecccCCCCccccccC----------------------CccceeeEEEEEEecceeeeccCCCCCCceeeeCCC-CeEEcc
Q 002982 147 YGVTSSGKTHTMHTP----------------------NREFLLRVSYLEIYNEVVNDLLNPAGQNLRIREDSQ-GTFVEG 203 (861)
Q Consensus 147 YGqTGSGKTyTM~g~----------------------~~~f~V~vSylEIYnE~I~DLL~p~~~~L~Ired~~-G~~V~g 203 (861)
||||||||||||+|+ +..|.|+|||+|||||.|+|||++....+.+++++. |+++.|
T Consensus 80 yG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~~~~~~~~~v~g 159 (321)
T cd01374 80 YGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNKGVVVAG 159 (321)
T ss_pred ecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCCCCceEEECCCCCEEeCC
Confidence 999999999999965 235789999999999999999999988999999997 799999
Q ss_pred cEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeeeeeeeeecCCCCCcccccc
Q 002982 204 VKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGSESSKAETT 283 (861)
Q Consensus 204 Lse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~SkL~LVDLAGSEr~kt~~~ 283 (861)
++++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|.+...... .......|+|+||||||+|+......
T Consensus 160 l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~-~~~~~~~s~l~~vDLAGsE~~~~~~~ 238 (321)
T cd01374 160 LTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDS-ESGTVRVSTLNLIDLAGSERASQTGA 238 (321)
T ss_pred ceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCC-CCCcEEEEEEEEEECCCCCccccCCC
Confidence 99999999999999999999999999999999999999999999998754332 23457889999999999999543338
Q ss_pred chhhhhhhhcccchHHHHHHHHHHhcCC-CCcccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHHHHHHHHHHc
Q 002982 284 GVRRKEGSYINKSLLTLGTVISKLTDGR-ATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETHNTLKFAHRA 362 (861)
Q Consensus 284 G~rlkEg~~INkSL~aLg~VI~ALs~~k-~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISPs~~~~eETLsTLrFAsRA 362 (861)
+.+++|+.+||+||++|++||.+|+.++ ..||||||||||+||+|+|||||+|+|||||+|...+++||++||+||+|+
T Consensus 239 ~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a~r~ 318 (321)
T cd01374 239 GERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRA 318 (321)
T ss_pred CccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999975 689999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 002982 363 KHI 365 (861)
Q Consensus 363 k~I 365 (861)
++|
T Consensus 319 ~~i 321 (321)
T cd01374 319 KKV 321 (321)
T ss_pred hcC
Confidence 986
No 16
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=2.5e-71 Score=604.29 Aligned_cols=288 Identities=38% Similarity=0.558 Sum_probs=258.0
Q ss_pred CCeEEEEecCCCChhhhccCCeEEEecCC-CEEEeCCCC---------CceeEeeceecCCCCcchhHHHHHHHHHHHHh
Q 002982 67 ENVTVTVRFRPLSPREIRQGEEIAWYADG-ETILRNEDN---------PSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGA 136 (861)
Q Consensus 67 ~~VkV~VRVRPl~~~E~~~g~~~~~~~d~-~~iv~~~~~---------~~~~F~FD~VF~~~atQeeVY~~~~~plV~~v 136 (861)
++|+|+|||||+.+.|...+...++..++ .++.+.++. ....|.||+||+++++|++||+.++.|+|+.+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 47999999999999998766654444444 344443211 24689999999999999999999999999999
Q ss_pred hcCCCeeEEEecccCCCCccccccCC---------------------ccceeeEEEEEEecceeeeccCCCCCCceeeeC
Q 002982 137 MDGINGTIFAYGVTSSGKTHTMHTPN---------------------REFLLRVSYLEIYNEVVNDLLNPAGQNLRIRED 195 (861)
Q Consensus 137 l~GyN~tIfAYGqTGSGKTyTM~g~~---------------------~~f~V~vSylEIYnE~I~DLL~p~~~~L~Ired 195 (861)
++|||+||||||||||||||||+|+. ..|.|+|||+|||||.|+|||++ .+.+.++++
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~-~~~l~i~~~ 159 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPNDDLGVTVSFFEIYGGKLFDLLND-RKRLSVLED 159 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccccccEEEEEEEeeecCchhhhccC-ccceeEEEc
Confidence 99999999999999999999999652 25799999999999999999998 567999999
Q ss_pred CC-CeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeeeeeeeeecCC
Q 002982 196 SQ-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAG 274 (861)
Q Consensus 196 ~~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~SkL~LVDLAG 274 (861)
+. |++|.|++++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|.|.+... ....|+|+||||||
T Consensus 160 ~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~-------~~~~s~l~~vDLAG 232 (322)
T cd01367 160 GKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL-------NKLLGKLSFIDLAG 232 (322)
T ss_pred CCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC-------CeeEEEEEEeecCC
Confidence 86 58999999999999999999999999999999999999999999999999987642 35779999999999
Q ss_pred CCCcc--ccccchhhhhhhhcccchHHHHHHHHHHhcCCCCcccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHH
Q 002982 275 SESSK--AETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEET 352 (861)
Q Consensus 275 SEr~k--t~~~G~rlkEg~~INkSL~aLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISPs~~~~eET 352 (861)
||+.. ....+.+++|+.+||+||++|++||.+|+.++ .||||||||||+||||+|||||+|+|||||||+..+++||
T Consensus 233 sE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~-~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eT 311 (322)
T cd01367 233 SERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNK-AHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHT 311 (322)
T ss_pred ccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCC-CcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHH
Confidence 99854 23578999999999999999999999999865 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcc
Q 002982 353 HNTLKFAHRAK 363 (861)
Q Consensus 353 LsTLrFAsRAk 363 (861)
++||+||+|+|
T Consensus 312 l~tL~fa~r~k 322 (322)
T cd01367 312 LNTLRYADRVK 322 (322)
T ss_pred HHHHHHHHhhC
Confidence 99999999986
No 17
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=3.8e-70 Score=594.18 Aligned_cols=289 Identities=36% Similarity=0.544 Sum_probs=258.5
Q ss_pred CeEEEEecCCCChhhhccCCeEEEecC-C---CEEEeCCC---CCceeEeeceecCCCCcchhHHHHHHHHHHHHhhcCC
Q 002982 68 NVTVTVRFRPLSPREIRQGEEIAWYAD-G---ETILRNED---NPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGI 140 (861)
Q Consensus 68 ~VkV~VRVRPl~~~E~~~g~~~~~~~d-~---~~iv~~~~---~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~Gy 140 (861)
+|+|+|||||+.+.|......+.+..+ . ..+...++ .....|.||+||+++++|++||+.++.|+|+.+++||
T Consensus 1 ~i~V~vRvRP~~~~e~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~ 80 (319)
T cd01376 1 NVRVVVRVRPFLDCEEDSSSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLSGQ 80 (319)
T ss_pred CcEEEEEeCcCCccccCCCceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 599999999999998543333333222 1 24443332 2457899999999999999999999999999999999
Q ss_pred CeeEEEecccCCCCccccccCC---------------------ccceeeEEEEEEecceeeeccCCCCCCceeeeCCCC-
Q 002982 141 NGTIFAYGVTSSGKTHTMHTPN---------------------REFLLRVSYLEIYNEVVNDLLNPAGQNLRIREDSQG- 198 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~g~~---------------------~~f~V~vSylEIYnE~I~DLL~p~~~~L~Ired~~G- 198 (861)
|+||||||||||||||||+|.. ..|.|+|||+|||||.|+|||++....+.|++++.|
T Consensus 81 n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~~~ 160 (319)
T cd01376 81 NATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQAWTGAFSMSYYEIYNEKVYDLLEPAKKELPIREDKDGN 160 (319)
T ss_pred ceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhccccceEEEEEEEEECCEeeEccCCCCCCceEEEcCCCC
Confidence 9999999999999999998643 257899999999999999999998889999999764
Q ss_pred eEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeeeeeeeeecCCCCC-
Q 002982 199 TFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGSES- 277 (861)
Q Consensus 199 ~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~SkL~LVDLAGSEr- 277 (861)
++|.|++++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|.|.+... .....|+|+||||||||+
T Consensus 161 ~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~------~~~~~s~l~~VDLAGsE~~ 234 (319)
T cd01376 161 ILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPAS------NIQLEGKLNLIDLAGSEDN 234 (319)
T ss_pred EEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECC------CceEEEEEEEEECCCCCcc
Confidence 8999999999999999999999999999999999999999999999999987642 236789999999999998
Q ss_pred ccccccchhhhhhhhcccchHHHHHHHHHHhcCCCCcccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHHHHHH
Q 002982 278 SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETHNTLK 357 (861)
Q Consensus 278 ~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISPs~~~~eETLsTLr 357 (861)
.+++..|.+++|+..||+||++|++||.+|+.+. .|||||||+||+||+|+|||||+|+|||||||...+++|||+||+
T Consensus 235 ~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~-~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~ 313 (319)
T cd01376 235 RRTGNEGIRLKESAAINSSLFVLSKVVDALNKGL-PRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLN 313 (319)
T ss_pred cccCCccchhhhhhhhhhhHHHHHHHHHHHhcCC-CcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHH
Confidence 4678899999999999999999999999999864 899999999999999999999999999999999999999999999
Q ss_pred HHHHcc
Q 002982 358 FAHRAK 363 (861)
Q Consensus 358 FAsRAk 363 (861)
||+|||
T Consensus 314 fa~r~~ 319 (319)
T cd01376 314 FASRSK 319 (319)
T ss_pred HHHhhC
Confidence 999986
No 18
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=2.4e-70 Score=599.55 Aligned_cols=296 Identities=44% Similarity=0.660 Sum_probs=266.0
Q ss_pred CeEEEEecCCCChhhhccCCeEEEe--cCCCEEEeCCCCCceeEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEE
Q 002982 68 NVTVTVRFRPLSPREIRQGEEIAWY--ADGETILRNEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIF 145 (861)
Q Consensus 68 ~VkV~VRVRPl~~~E~~~g~~~~~~--~d~~~iv~~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIf 145 (861)
+|+|+||+||+...|...+...++. ++...++... .+.|.||+||+++++|++||+.++.|+|+.+++|||+|||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~---~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ 78 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT---DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVL 78 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecC---CcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCcccee
Confidence 6999999999999998766654443 2223444432 4689999999999999999999999999999999999999
Q ss_pred EecccCCCCccccccCC-----------------------------ccceeeEEEEEEecceeeeccCCC---CCCceee
Q 002982 146 AYGVTSSGKTHTMHTPN-----------------------------REFLLRVSYLEIYNEVVNDLLNPA---GQNLRIR 193 (861)
Q Consensus 146 AYGqTGSGKTyTM~g~~-----------------------------~~f~V~vSylEIYnE~I~DLL~p~---~~~L~Ir 193 (861)
|||||||||||||+|+. .+|.|.|||+|||||.|+|||.+. ...+.|+
T Consensus 79 ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~l~i~ 158 (341)
T cd01372 79 AYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPIQIR 158 (341)
T ss_pred eecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCCCceEE
Confidence 99999999999999763 358999999999999999999987 4789999
Q ss_pred eCC-CCeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCC------CCCceeeeee
Q 002982 194 EDS-QGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGEN------SAGEAVNLSQ 266 (861)
Q Consensus 194 ed~-~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~------~~~~~~~~Sk 266 (861)
+++ .|++|.|++++.|.++++++.+|..|.++|.+++|.+|..|||||+||+|+|.+...... ........|+
T Consensus 159 e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s~ 238 (341)
T cd01372 159 EDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSK 238 (341)
T ss_pred ECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeEE
Confidence 999 569999999999999999999999999999999999999999999999999998765421 1334578899
Q ss_pred eeeeecCCCCC-ccccccchhhhhhhhcccchHHHHHHHHHHhcCCC--CcccCCCCchhhhhhccCCCCccceeEEeeC
Q 002982 267 LHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRA--THIPYRDSKLTRLLQSSLSGHGRVSLICTVT 343 (861)
Q Consensus 267 L~LVDLAGSEr-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~k~--~hIPYRDSKLTrLLqdSLGGNskT~mIa~IS 343 (861)
|+||||||+|+ .++...|.+++|+..||+||++|++||.+|+.+.. .||||||||||+||+|+||||++|+||+|||
T Consensus 239 l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~vs 318 (341)
T cd01372 239 FHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMIACVS 318 (341)
T ss_pred EEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeC
Confidence 99999999999 56778899999999999999999999999998653 8999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHccccc
Q 002982 344 PSSSSSEETHNTLKFAHRAKHIE 366 (861)
Q Consensus 344 Ps~~~~eETLsTLrFAsRAk~Ik 366 (861)
|...+++||++||+||+|||+|+
T Consensus 319 p~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 319 PADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred CChhhHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999986
No 19
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=2.9e-69 Score=590.79 Aligned_cols=290 Identities=42% Similarity=0.634 Sum_probs=258.8
Q ss_pred CeEEEEecCCCChhhhccCCeEEEecCCCEEEeCC-----------CCCceeEeeceecCCCCcchhHHHHHHHHHHHHh
Q 002982 68 NVTVTVRFRPLSPREIRQGEEIAWYADGETILRNE-----------DNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGA 136 (861)
Q Consensus 68 ~VkV~VRVRPl~~~E~~~g~~~~~~~d~~~iv~~~-----------~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~v 136 (861)
+|+|+||+||+...+ ...+.+..++..+..+. ......|.||+||++ ++|++||+.++.|+|+++
T Consensus 1 ~i~V~vRvRP~~~~~---~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~ 76 (334)
T cd01375 1 TIQVFVRVRPTPTKQ---GSSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSA 76 (334)
T ss_pred CeEEEEECCCCCCCC---CccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHH
Confidence 489999999998844 23455555655533322 224567999999999 999999999999999999
Q ss_pred hcCCCeeEEEecccCCCCccccccCC-------------------------ccceeeEEEEEEecceeeeccCCCC----
Q 002982 137 MDGINGTIFAYGVTSSGKTHTMHTPN-------------------------REFLLRVSYLEIYNEVVNDLLNPAG---- 187 (861)
Q Consensus 137 l~GyN~tIfAYGqTGSGKTyTM~g~~-------------------------~~f~V~vSylEIYnE~I~DLL~p~~---- 187 (861)
++|||+||||||||||||||||+|+. ..|.|+|||+|||||+|+|||++..
T Consensus 77 ~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~~ 156 (334)
T cd01375 77 LDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTPEALE 156 (334)
T ss_pred hCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCCCCccccc
Confidence 99999999999999999999999753 2589999999999999999999874
Q ss_pred --CCceeeeCC-CCeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeee
Q 002982 188 --QNLRIREDS-QGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNL 264 (861)
Q Consensus 188 --~~L~Ired~-~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~ 264 (861)
+.+.|++++ .|++|.|++++.|.+++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+..... .......
T Consensus 157 ~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~--~~~~~~~ 234 (334)
T cd01375 157 SLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREA--GSEVVRL 234 (334)
T ss_pred cCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCC--CCCceEE
Confidence 579999997 56999999999999999999999999999999999999999999999999999874332 2345778
Q ss_pred eeeeeeecCCCCC-ccccccchhhhhhhhcccchHHHHHHHHHHhcCCCCcccCCCCchhhhhhccCCCCccceeEEeeC
Q 002982 265 SQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVT 343 (861)
Q Consensus 265 SkL~LVDLAGSEr-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIa~IS 343 (861)
|+|+||||||||+ .+++..|.+++|+..||+||++|++||.+|+.++..||||||||||+||+|+|||||+|+||||||
T Consensus 235 s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vs 314 (334)
T cd01375 235 SKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIW 314 (334)
T ss_pred EEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeC
Confidence 9999999999999 567788999999999999999999999999997778999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHcc
Q 002982 344 PSSSSSEETHNTLKFAHRAK 363 (861)
Q Consensus 344 Ps~~~~eETLsTLrFAsRAk 363 (861)
|+..+++|||+||+||+|++
T Consensus 315 p~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 315 VEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred CchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999985
No 20
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=2.7e-68 Score=580.89 Aligned_cols=296 Identities=41% Similarity=0.610 Sum_probs=267.5
Q ss_pred CCCeEEEEecCCCChhhhccCCeEEEecCC--CEEEeCCC-CCceeEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCe
Q 002982 66 KENVTVTVRFRPLSPREIRQGEEIAWYADG--ETILRNED-NPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGING 142 (861)
Q Consensus 66 ~~~VkV~VRVRPl~~~E~~~g~~~~~~~d~--~~iv~~~~-~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~ 142 (861)
+|+|+|+|||||+...|......++...++ .++..... .....|.||+||+++++|++||+. +.|+|+.+++|||+
T Consensus 1 ~~~i~V~vRirP~~~~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~-v~p~v~~~~~G~~~ 79 (329)
T cd01366 1 KGNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQEDVFEE-VSPLVQSALDGYNV 79 (329)
T ss_pred CCCEEEEEEcCcCCccccCCCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCCCHHHHHHH-HHHHHHHHhCCCce
Confidence 478999999999999886444444444444 56655554 667899999999999999999997 59999999999999
Q ss_pred eEEEecccCCCCccccccC------------------------CccceeeEEEEEEecceeeeccCCC---CCCceeeeC
Q 002982 143 TIFAYGVTSSGKTHTMHTP------------------------NREFLLRVSYLEIYNEVVNDLLNPA---GQNLRIRED 195 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~g~------------------------~~~f~V~vSylEIYnE~I~DLL~p~---~~~L~Ired 195 (861)
||||||+|||||||||+|+ +..|.|.+||+|||||+|+|||.+. ...+.|+++
T Consensus 80 ~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~ 159 (329)
T cd01366 80 CIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHD 159 (329)
T ss_pred EEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCceEEEEC
Confidence 9999999999999999875 3468899999999999999999986 678999999
Q ss_pred C-CCeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeeeeeeeeecCC
Q 002982 196 S-QGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAG 274 (861)
Q Consensus 196 ~-~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~SkL~LVDLAG 274 (861)
+ .|+++.|++++.|.+++|+..+|..|.++|.++.|.+|..|||||+||+|+|.+.... +.....|+|+||||||
T Consensus 160 ~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~----~~~~~~s~l~~VDLaG 235 (329)
T cd01366 160 SKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ----TGEQTRGKLNLVDLAG 235 (329)
T ss_pred CCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCC----CCcEEEEEEEEEECCC
Confidence 9 5699999999999999999999999999999999999999999999999999876433 3457889999999999
Q ss_pred CCC-ccccccchhhhhhhhcccchHHHHHHHHHHhcCCCCcccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHH
Q 002982 275 SES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETH 353 (861)
Q Consensus 275 SEr-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISPs~~~~eETL 353 (861)
+|+ .+.+..|.+++|+..||+||++|++||.+|+.+ ..|||||||+||+||+|+|||+++|+|||||||...+++||+
T Consensus 236 sE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~-~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl 314 (329)
T cd01366 236 SERLKKSGATGDRLKEAQAINKSLSALGDVISALRSK-DSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETL 314 (329)
T ss_pred CcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcC-CCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHH
Confidence 999 557788999999999999999999999999986 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcccccc
Q 002982 354 NTLKFAHRAKHIEI 367 (861)
Q Consensus 354 sTLrFAsRAk~Ikn 367 (861)
+||+||+|+++|++
T Consensus 315 ~tL~~a~~~~~i~~ 328 (329)
T cd01366 315 CSLRFASRVRSVEL 328 (329)
T ss_pred HHHHHHHHhhcccC
Confidence 99999999999986
No 21
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=2.2e-66 Score=566.34 Aligned_cols=303 Identities=46% Similarity=0.677 Sum_probs=273.3
Q ss_pred CeEEEEecCCCChhhhccCCeEEEecC---CCEEEeCCC---CCceeEeeceecCCCCcchhHHHHHHHHHHHHhhcCCC
Q 002982 68 NVTVTVRFRPLSPREIRQGEEIAWYAD---GETILRNED---NPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGIN 141 (861)
Q Consensus 68 ~VkV~VRVRPl~~~E~~~g~~~~~~~d---~~~iv~~~~---~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN 141 (861)
+|+|+|||||+...|...+...++..+ +..++.... .....|.||+||+++++|++||+.++.|+|+.+++|+|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~ 80 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYN 80 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCc
Confidence 599999999999998876665444332 235554432 34578999999999999999999999999999999999
Q ss_pred eeEEEecccCCCCccccccC-----------------------CccceeeEEEEEEecceeeeccCCCCCCceeeeCCC-
Q 002982 142 GTIFAYGVTSSGKTHTMHTP-----------------------NREFLLRVSYLEIYNEVVNDLLNPAGQNLRIREDSQ- 197 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~g~-----------------------~~~f~V~vSylEIYnE~I~DLL~p~~~~L~Ired~~- 197 (861)
+||||||+|||||||||+|+ +..|.|+|||+|||+|.|+|||++..+.+.|++++.
T Consensus 81 ~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~i~~~~~~ 160 (335)
T smart00129 81 ATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPKKLEIREDKKG 160 (335)
T ss_pred eeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCCCcEEEECCCC
Confidence 99999999999999999864 235889999999999999999999999999999986
Q ss_pred CeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeeeeeeeeecCCCCC
Q 002982 198 GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGSES 277 (861)
Q Consensus 198 G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~SkL~LVDLAGSEr 277 (861)
|+++.|++++.|.|+++++.+|..|.++|.+++|.+|..|||||+||+|+|.+.... ........|+|+||||||+|+
T Consensus 161 ~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~--~~~~~~~~s~l~~VDLaGse~ 238 (335)
T smart00129 161 GVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKN--SSSGSGKASKLNLVDLAGSER 238 (335)
T ss_pred CEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecC--CCCCCEEEEEEEEEECCCCCc
Confidence 699999999999999999999999999999999999999999999999999976332 234557889999999999999
Q ss_pred c-cccccchhhhhhhhcccchHHHHHHHHHHhcC-CCCcccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHHHH
Q 002982 278 S-KAETTGVRRKEGSYINKSLLTLGTVISKLTDG-RATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETHNT 355 (861)
Q Consensus 278 ~-kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~-k~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISPs~~~~eETLsT 355 (861)
. +.++.|.+++|+..||+||.+|++||.+|+++ +..|||||+|+||+||+++|||+++|+||+||+|...+++||++|
T Consensus 239 ~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~t 318 (335)
T smart00129 239 ASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLST 318 (335)
T ss_pred cccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHH
Confidence 4 56678999999999999999999999999985 568999999999999999999999999999999999999999999
Q ss_pred HHHHHHccccccccccc
Q 002982 356 LKFAHRAKHIEILAAQN 372 (861)
Q Consensus 356 LrFAsRAk~Ikn~~~~N 372 (861)
|+||+++++|+|.|++|
T Consensus 319 L~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 319 LRFASRAKEIKNKAIVN 335 (335)
T ss_pred HHHHHHHhhcccCCCcC
Confidence 99999999999999875
No 22
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.3e-67 Score=617.50 Aligned_cols=306 Identities=39% Similarity=0.545 Sum_probs=270.7
Q ss_pred CCCCCCCCeEEEEecCCCChhhhccCCeEEEecC--CCEEEeCCCCCce----eEeeceecCCCCcchhHHHHHHHHHHH
Q 002982 61 ENPSSKENVTVTVRFRPLSPREIRQGEEIAWYAD--GETILRNEDNPSI----AYAYDRVFGPTTTTRHVYDIAAQHVVS 134 (861)
Q Consensus 61 ~~~~~~~~VkV~VRVRPl~~~E~~~g~~~~~~~d--~~~iv~~~~~~~~----~F~FD~VF~~~atQeeVY~~~~~plV~ 134 (861)
.-...+|+|+|+|||||+.+.+.......+...+ +..++..+..... .|.||+||+|.++|++||.. +.|+|.
T Consensus 308 ~i~eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e-~~~lv~ 386 (670)
T KOG0239|consen 308 EILELKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEE-VSPLVQ 386 (670)
T ss_pred HHHHhhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHH-HHHHHH
Confidence 3345689999999999999999875333333333 2344444333322 49999999999999999995 589999
Q ss_pred HhhcCCCeeEEEecccCCCCccccccC------------------------CccceeeEEEEEEecceeeeccCCC--CC
Q 002982 135 GAMDGINGTIFAYGVTSSGKTHTMHTP------------------------NREFLLRVSYLEIYNEVVNDLLNPA--GQ 188 (861)
Q Consensus 135 ~vl~GyN~tIfAYGqTGSGKTyTM~g~------------------------~~~f~V~vSylEIYnE~I~DLL~p~--~~ 188 (861)
++|+|||+||||||||||||||||.|+ ++.|.+.++|+|||||.|+|||.+. ..
T Consensus 387 S~lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~ 466 (670)
T KOG0239|consen 387 SALDGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVG 466 (670)
T ss_pred HHhcCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhcccccccc
Confidence 999999999999999999999999984 2358999999999999999999887 47
Q ss_pred CceeeeCCCC-eEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeeeee
Q 002982 189 NLRIREDSQG-TFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQL 267 (861)
Q Consensus 189 ~L~Ired~~G-~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~SkL 267 (861)
.+.|+.+++| .+|.+++.+.|.+.+++..+|+.|..+|++++|.+|.+|||||+||+|+|... +...+....+.|
T Consensus 467 k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~----~~~t~~~~~g~l 542 (670)
T KOG0239|consen 467 KLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGI----NELTGIRVTGVL 542 (670)
T ss_pred ceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEecc----ccCcccccccce
Confidence 8999999865 89999999999999999999999999999999999999999999999999743 444566788999
Q ss_pred eeeecCCCCC-ccccccchhhhhhhhcccchHHHHHHHHHHhcCCCCcccCCCCchhhhhhccCCCCccceeEEeeCCCC
Q 002982 268 HLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSS 346 (861)
Q Consensus 268 ~LVDLAGSEr-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISPs~ 346 (861)
+||||||||| .+++.+|.|++|+.+||+||++||+||.||+. +..||||||||||+|||++|||++||+|+++|||..
T Consensus 543 ~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~-k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~ 621 (670)
T KOG0239|consen 543 NLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALAS-KRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAA 621 (670)
T ss_pred eEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhh-cCCCCcccccchHHHhHhhhCCccceeeEEEeCccH
Confidence 9999999999 67899999999999999999999999999998 568999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHccccccccccc
Q 002982 347 SSSEETHNTLKFAHRAKHIEILAAQN 372 (861)
Q Consensus 347 ~~~eETLsTLrFAsRAk~Ikn~~~~N 372 (861)
.++.||+++|+||.|++.+...+..-
T Consensus 622 ~~~~Etl~sL~FA~rv~~~~lG~a~~ 647 (670)
T KOG0239|consen 622 AALFETLCSLRFATRVRSVELGSARK 647 (670)
T ss_pred HHHhhhhhccchHHHhhceecccccc
Confidence 99999999999999999998877654
No 23
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=2.6e-65 Score=555.72 Aligned_cols=294 Identities=47% Similarity=0.703 Sum_probs=263.9
Q ss_pred CeEEEEecCCCChhhhccCCeEEEecCCCEEEeCCC-----CCceeEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCe
Q 002982 68 NVTVTVRFRPLSPREIRQGEEIAWYADGETILRNED-----NPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGING 142 (861)
Q Consensus 68 ~VkV~VRVRPl~~~E~~~g~~~~~~~d~~~iv~~~~-----~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~ 142 (861)
+|+|+|||||+...|...+..++...++..+++.++ .....|.||+||+++++|++||+.++.|+|+++++|||+
T Consensus 1 ~i~V~vRvrP~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~ 80 (328)
T cd00106 1 NIRVVVRIRPLNGRESKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNG 80 (328)
T ss_pred CeEEEEEcCCCCcccccCCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCce
Confidence 599999999999887443444444444466665543 246799999999999999999999999999999999999
Q ss_pred eEEEecccCCCCccccccC------------------------CccceeeEEEEEEecceeeeccCCC--CCCceeeeCC
Q 002982 143 TIFAYGVTSSGKTHTMHTP------------------------NREFLLRVSYLEIYNEVVNDLLNPA--GQNLRIREDS 196 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~g~------------------------~~~f~V~vSylEIYnE~I~DLL~p~--~~~L~Ired~ 196 (861)
||||||+|||||||||+|+ ...|.|.+||+|||+|.|+|||.+. ...+.+++++
T Consensus 81 ~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i~~~~ 160 (328)
T cd00106 81 TIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLREDP 160 (328)
T ss_pred eEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEEEEcC
Confidence 9999999999999999974 2458999999999999999999997 8899999999
Q ss_pred -CCeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeeeeeeeeecCCC
Q 002982 197 -QGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGS 275 (861)
Q Consensus 197 -~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~SkL~LVDLAGS 275 (861)
.|+++.|++++.|.|++|++.+|..|.++|.++.|.+|..|||||+||+|+|.+....... .....|+|+||||||+
T Consensus 161 ~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~--~~~~~s~l~~VDLaGs 238 (328)
T cd00106 161 KGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDG--RSIKSSKLNLVDLAGS 238 (328)
T ss_pred CCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCC--ccEEEEEEEEEECCCC
Confidence 5699999999999999999999999999999999999999999999999999987543322 1477899999999999
Q ss_pred CC-ccccccchhhhhhhhcccchHHHHHHHHHHhcCC-CCcccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHH
Q 002982 276 ES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGR-ATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETH 353 (861)
Q Consensus 276 Er-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~k-~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISPs~~~~eETL 353 (861)
|+ .+.+..+.+++|+..||+||.+|++||.+|+.+. ..|||||+||||+||+|+|||+++|+|||||+|...+++||+
T Consensus 239 e~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl 318 (328)
T cd00106 239 ERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETL 318 (328)
T ss_pred CcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHH
Confidence 98 4566889999999999999999999999999876 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcc
Q 002982 354 NTLKFAHRAK 363 (861)
Q Consensus 354 sTLrFAsRAk 363 (861)
+||+||+|||
T Consensus 319 ~tL~~a~r~~ 328 (328)
T cd00106 319 STLRFASRAK 328 (328)
T ss_pred HHHHHHHhcC
Confidence 9999999986
No 24
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.2e-66 Score=575.87 Aligned_cols=293 Identities=36% Similarity=0.540 Sum_probs=260.9
Q ss_pred CCCCeEEEEecCCCChhhhccCCe-EEEecCCCEEEeCCCC---------CceeEeeceecCCCCcchhHHHHHHHHHHH
Q 002982 65 SKENVTVTVRFRPLSPREIRQGEE-IAWYADGETILRNEDN---------PSIAYAYDRVFGPTTTTRHVYDIAAQHVVS 134 (861)
Q Consensus 65 ~~~~VkV~VRVRPl~~~E~~~g~~-~~~~~d~~~iv~~~~~---------~~~~F~FD~VF~~~atQeeVY~~~~~plV~ 134 (861)
....|.||||-||++..|....+. ++-.+..+.++++.+. ....|.||++||+.++++.||..+++|||.
T Consensus 206 ~ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~ 285 (676)
T KOG0246|consen 206 NEHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVK 285 (676)
T ss_pred ccceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHH
Confidence 457899999999999999876654 4444566666665533 345899999999999999999999999999
Q ss_pred HhhcCCCeeEEEecccCCCCccccccC------------------------------CccceeeEEEEEEecceeeeccC
Q 002982 135 GAMDGINGTIFAYGVTSSGKTHTMHTP------------------------------NREFLLRVSYLEIYNEVVNDLLN 184 (861)
Q Consensus 135 ~vl~GyN~tIfAYGqTGSGKTyTM~g~------------------------------~~~f~V~vSylEIYnE~I~DLL~ 184 (861)
.+|+|--+|+||||||||||||||.|. ..++.|++||||||+.+|||||+
T Consensus 286 ~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~ 365 (676)
T KOG0246|consen 286 TIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLN 365 (676)
T ss_pred HHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhc
Confidence 999999999999999999999999532 12478999999999999999999
Q ss_pred CCCCCceeeeCCCC-eEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceee
Q 002982 185 PAGQNLRIREDSQG-TFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVN 263 (861)
Q Consensus 185 p~~~~L~Ired~~G-~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~ 263 (861)
+ ++.|.+.||.++ +.|.||++..|.+.++++.+|..|+..|+++.|..|..|||||+||+|.+... +....
T Consensus 366 ~-k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~-------~~~k~ 437 (676)
T KOG0246|consen 366 D-KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKH-------GEFKL 437 (676)
T ss_pred c-ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecC-------Cccee
Confidence 7 457999999976 88999999999999999999999999999999999999999999999999743 22467
Q ss_pred eeeeeeeecCCCCCc--cccccchhhhhhhhcccchHHHHHHHHHHhcCCCCcccCCCCchhhhhhccCCC-CccceeEE
Q 002982 264 LSQLHLIDLAGSESS--KAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSG-HGRVSLIC 340 (861)
Q Consensus 264 ~SkL~LVDLAGSEr~--kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGG-NskT~mIa 340 (861)
.|++.||||||+||+ .+.+..++..||+.|||||+||..||.||... +.|+|||.||||.+|+|||-| |++||||+
T Consensus 438 hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~n-k~H~PFR~SKLTqVLRDSFIGenSrTcMIA 516 (676)
T KOG0246|consen 438 HGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRN-KSHLPFRGSKLTQVLRDSFIGENSRTCMIA 516 (676)
T ss_pred EeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCC-CCCCCchhhhHHHHHHHhhcCCCCceEEEE
Confidence 899999999999994 34566778899999999999999999999875 589999999999999999988 99999999
Q ss_pred eeCCCCCChHHHHHHHHHHHHccccc
Q 002982 341 TVTPSSSSSEETHNTLKFAHRAKHIE 366 (861)
Q Consensus 341 ~ISPs~~~~eETLsTLrFAsRAk~Ik 366 (861)
||||.....+.||+|||||+|+|...
T Consensus 517 ~ISPg~~ScEhTLNTLRYAdRVKeLs 542 (676)
T KOG0246|consen 517 TISPGISSCEHTLNTLRYADRVKELS 542 (676)
T ss_pred EeCCCcchhhhhHHHHHHHHHHHhhc
Confidence 99999999999999999999999764
No 25
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=1.4e-66 Score=567.10 Aligned_cols=292 Identities=46% Similarity=0.679 Sum_probs=256.8
Q ss_pred ecCCCChhhhccCCeEEEecCC----CEEEe---CCCCCceeEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEE
Q 002982 74 RFRPLSPREIRQGEEIAWYADG----ETILR---NEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFA 146 (861)
Q Consensus 74 RVRPl~~~E~~~g~~~~~~~d~----~~iv~---~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfA 146 (861)
||||++..|...+....+.... ..... ........|.||+||+++++|++||+.++.|+|+.+|+|||+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 8999999999988876654432 11111 1223456899999999999999999999999999999999999999
Q ss_pred ecccCCCCccccccC--C-------------------------ccceeeEEEEEEecceeeeccCCC----CCCceeeeC
Q 002982 147 YGVTSSGKTHTMHTP--N-------------------------REFLLRVSYLEIYNEVVNDLLNPA----GQNLRIRED 195 (861)
Q Consensus 147 YGqTGSGKTyTM~g~--~-------------------------~~f~V~vSylEIYnE~I~DLL~p~----~~~L~Ired 195 (861)
||+|||||||||+|+ . ..|.|+|||+|||||.|+|||++. ..++.|+++
T Consensus 81 yG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~ 160 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIRED 160 (335)
T ss_dssp EESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEE
T ss_pred eccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccceeec
Confidence 999999999999986 1 258999999999999999999988 357999999
Q ss_pred CC-C-eEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeeeeeeeeecC
Q 002982 196 SQ-G-TFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLA 273 (861)
Q Consensus 196 ~~-G-~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~SkL~LVDLA 273 (861)
+. | ++|.|++++.|.++++++.+|..|.++|.++.|.+|..|||||+||+|+|.+..............|+|+|||||
T Consensus 161 ~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLa 240 (335)
T PF00225_consen 161 SNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLA 240 (335)
T ss_dssp TTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEE
T ss_pred cccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeeecc
Confidence 97 6 999999999999999999999999999999999999999999999999999886554433224688999999999
Q ss_pred CCCCcc-ccc-cchhhhhhhhcccchHHHHHHHHHHhcC-CCCcccCCCCchhhhhhccCCCCccceeEEeeCCCCCChH
Q 002982 274 GSESSK-AET-TGVRRKEGSYINKSLLTLGTVISKLTDG-RATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSE 350 (861)
Q Consensus 274 GSEr~k-t~~-~G~rlkEg~~INkSL~aLg~VI~ALs~~-k~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISPs~~~~e 350 (861)
|+|+.+ ... .+.+++|+..||+||.+|++||.+|+.+ +..|||||+||||+||+|+|||||+|+||+||+|...+++
T Consensus 241 GsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~ 320 (335)
T PF00225_consen 241 GSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYE 320 (335)
T ss_dssp ESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHH
T ss_pred cccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccHH
Confidence 999844 443 4888999999999999999999999997 5789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcccc
Q 002982 351 ETHNTLKFAHRAKHI 365 (861)
Q Consensus 351 ETLsTLrFAsRAk~I 365 (861)
||++||+||.++|+|
T Consensus 321 eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 321 ETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999999987
No 26
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1e-62 Score=560.41 Aligned_cols=306 Identities=37% Similarity=0.596 Sum_probs=265.9
Q ss_pred CCCCCeEEEEecCCCChhhhccCCeEEEecCCCEEEeC------------CCCCceeEeeceecCCCCcchhHHHHHHHH
Q 002982 64 SSKENVTVTVRFRPLSPREIRQGEEIAWYADGETILRN------------EDNPSIAYAYDRVFGPTTTTRHVYDIAAQH 131 (861)
Q Consensus 64 ~~~~~VkV~VRVRPl~~~E~~~g~~~~~~~d~~~iv~~------------~~~~~~~F~FD~VF~~~atQeeVY~~~~~p 131 (861)
...+.|.|+||+||+.+.-...| ++...+..+|+.. .+.-...|.|-+||+|+++|.+||+.++.|
T Consensus 28 ~~~d~v~v~~rvrP~~~~~~~~g--~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~p 105 (809)
T KOG0247|consen 28 ESKDPVLVVCRVRPLSDASEDEG--CLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAP 105 (809)
T ss_pred hhhcchheeEeecCCCCCccccc--eEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHH
Confidence 44788999999999986222222 2233333333322 222346799999999999999999999999
Q ss_pred HHHHhhcCCCeeEEEecccCCCCccccccC--------------------------------------------------
Q 002982 132 VVSGAMDGINGTIFAYGVTSSGKTHTMHTP-------------------------------------------------- 161 (861)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM~g~-------------------------------------------------- 161 (861)
+|.+++.|-|+.+|+||.|||||||||+|+
T Consensus 106 lV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr 185 (809)
T KOG0247|consen 106 LVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLKR 185 (809)
T ss_pred HHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999621
Q ss_pred -------------------------------------CccceeeEEEEEEecceeeeccCCCCC-----C-ceeeeCCCC
Q 002982 162 -------------------------------------NREFLLRVSYLEIYNEVVNDLLNPAGQ-----N-LRIREDSQG 198 (861)
Q Consensus 162 -------------------------------------~~~f~V~vSylEIYnE~I~DLL~p~~~-----~-L~Ired~~G 198 (861)
+..|.|+|||+|||||.|||||.+... . ..+++|.+|
T Consensus 186 ~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~~~ 265 (809)
T KOG0247|consen 186 EAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDTNG 265 (809)
T ss_pred hhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhccCC
Confidence 123899999999999999999987642 2 667888877
Q ss_pred -eEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeeeeeeeeecCCCCC
Q 002982 199 -TFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGSES 277 (861)
Q Consensus 199 -~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~SkL~LVDLAGSEr 277 (861)
+||.|++|+.|.+.+|++.+|..|.++|++++|..|..|||||+||+|.|.+.+... +...+..|.|.|||||||||
T Consensus 266 ~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~--~s~~i~vSqlsLvDLAGSER 343 (809)
T KOG0247|consen 266 NMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQ--DSNQITVSQLSLVDLAGSER 343 (809)
T ss_pred CeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeeccccc--ccCceeEEeeeeeecccchh
Confidence 899999999999999999999999999999999999999999999999999876553 34568899999999999999
Q ss_pred -ccccccchhhhhhhhcccchHHHHHHHHHHhcC----CCCcccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHH
Q 002982 278 -SKAETTGVRRKEGSYINKSLLTLGTVISKLTDG----RATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEET 352 (861)
Q Consensus 278 -~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~----k~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISPs~~~~eET 352 (861)
.++++.|.|++|+++||.||++||+||.+|..+ ...+|||||||||++++.+|.|.++++||+||+|...+|+|+
T Consensus 344 t~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEn 423 (809)
T KOG0247|consen 344 TNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDEN 423 (809)
T ss_pred cccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHH
Confidence 789999999999999999999999999999863 347999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcccccccccccc
Q 002982 353 HNTLKFAHRAKHIEILAAQNK 373 (861)
Q Consensus 353 LsTLrFAsRAk~Ikn~~~~N~ 373 (861)
++.|+||..|+.|.+...++.
T Consensus 424 l~vlkFaeiaq~v~v~~~~~~ 444 (809)
T KOG0247|consen 424 LNVLKFAEIAQEVEVARPVIK 444 (809)
T ss_pred HHHHHHHHhcccccccCcccc
Confidence 999999999999988777754
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.9e-60 Score=552.58 Aligned_cols=292 Identities=40% Similarity=0.589 Sum_probs=260.2
Q ss_pred cCCCChhhhccCCeEEEe--cCCCEEEeCCCCCceeEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCC
Q 002982 75 FRPLSPREIRQGEEIAWY--ADGETILRNEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSS 152 (861)
Q Consensus 75 VRPl~~~E~~~g~~~~~~--~d~~~iv~~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGS 152 (861)
|||+...|..+|...+.. +....++... ..+|+||+||+....|.++|+.++.|+++.+|.|||+||+|||||||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig~---~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgs 77 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIGK---DASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGS 77 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeecC---CcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCC
Confidence 699999999988865543 2333344432 34799999999999999999999999999999999999999999999
Q ss_pred CCccccccC--------------------------CccceeeEEEEEEecceeeeccCCCC--CCceeeeCCCC-eEEcc
Q 002982 153 GKTHTMHTP--------------------------NREFLLRVSYLEIYNEVVNDLLNPAG--QNLRIREDSQG-TFVEG 203 (861)
Q Consensus 153 GKTyTM~g~--------------------------~~~f~V~vSylEIYnE~I~DLL~p~~--~~L~Ired~~G-~~V~g 203 (861)
||||||.+. ...|.|.|||+|||++.|+|||.|.. .++.+++ +.| +.+.|
T Consensus 78 gkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e-~~g~it~~g 156 (913)
T KOG0244|consen 78 GKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE-PKGEITIRG 156 (913)
T ss_pred CceeecccccccccccCCcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhhhhhceeccc-cCCceEEEe
Confidence 999999743 12388999999999999999999654 4577888 555 89999
Q ss_pred cEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeeeeeeeeecCCCCC-ccccc
Q 002982 204 VKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGSES-SKAET 282 (861)
Q Consensus 204 Lse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~SkL~LVDLAGSEr-~kt~~ 282 (861)
+++..|.+..+.+..|..|.-.|++++|+||..|||||+||+|.+++...... .....++|+||||||||| .++.+
T Consensus 157 lte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~---~s~~~sKlhlVDLAGSER~kkT~a 233 (913)
T KOG0244|consen 157 LTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSK---RSSFCSKLHLVDLAGSERVKKTKA 233 (913)
T ss_pred ehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhc---cchhhhhhheeecccccccccccc
Confidence 99999999999999999999999999999999999999999999987543322 235679999999999999 67899
Q ss_pred cchhhhhhhhcccchHHHHHHHHHHhcCC-CCcccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHHHHHHHHHH
Q 002982 283 TGVRRKEGSYINKSLLTLGTVISKLTDGR-ATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETHNTLKFAHR 361 (861)
Q Consensus 283 ~G~rlkEg~~INkSL~aLg~VI~ALs~~k-~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISPs~~~~eETLsTLrFAsR 361 (861)
+|.|++||.+||.+|++||+||+||.+.+ ..|||||||||||||||+||||+.|+||+||||+..+.+|||+||+||.|
T Consensus 234 ~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya~R 313 (913)
T KOG0244|consen 234 EGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYADR 313 (913)
T ss_pred chhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHhhH
Confidence 99999999999999999999999998743 46999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccc
Q 002982 362 AKHIEILAAQNK 373 (861)
Q Consensus 362 Ak~Ikn~~~~N~ 373 (861)
|+.|+|.|++|.
T Consensus 314 ak~iknk~vvN~ 325 (913)
T KOG0244|consen 314 AKQIKNKPVVNQ 325 (913)
T ss_pred HHHhcccccccc
Confidence 999999999996
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-57 Score=528.91 Aligned_cols=299 Identities=45% Similarity=0.652 Sum_probs=261.9
Q ss_pred CCCCeEEEEecCCCChhhhccCCeEEEecCCCEEEeCCCCCceeEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeE
Q 002982 65 SKENVTVTVRFRPLSPREIRQGEEIAWYADGETILRNEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTI 144 (861)
Q Consensus 65 ~~~~VkV~VRVRPl~~~E~~~g~~~~~~~d~~~iv~~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tI 144 (861)
....++++++..|-...+ .+....+...+.... .....|.||+||++.++|++||+..++|+++.++.||||||
T Consensus 20 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~Tv 93 (568)
T COG5059 20 SVSDIKSTIRIIPGELGE-----RLINTSKKSHVSLEK-SKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTV 93 (568)
T ss_pred eecCceEEEeecCCCcch-----heeeccccccccccc-ccceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceE
Confidence 357799999999965443 222222222222221 11557999999999999999999999999999999999999
Q ss_pred EEecccCCCCccccccCC-----------------------ccceeeEEEEEEecceeeeccCCCCCCceeeeCCC-CeE
Q 002982 145 FAYGVTSSGKTHTMHTPN-----------------------REFLLRVSYLEIYNEVVNDLLNPAGQNLRIREDSQ-GTF 200 (861)
Q Consensus 145 fAYGqTGSGKTyTM~g~~-----------------------~~f~V~vSylEIYnE~I~DLL~p~~~~L~Ired~~-G~~ 200 (861)
||||||||||||||.|.. ..|.|.|||+|||||+++|||.+....+.++++.. |++
T Consensus 94 fayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~~~~~~~~~~~v~ 173 (568)
T COG5059 94 FAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEESLNIREDSLLGVK 173 (568)
T ss_pred EEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCccccccccccCCCceE
Confidence 999999999999997542 46999999999999999999998887788888874 699
Q ss_pred EcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeeeeeeeeecCCCCC-cc
Q 002982 201 VEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGSES-SK 279 (861)
Q Consensus 201 V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~SkL~LVDLAGSEr-~k 279 (861)
|.|+++..|.++++++.+|..|..+|.++.|.+|..|||||+||++.+.+.....+ ....++|+||||||||+ ..
T Consensus 174 v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~----~~~~~~l~lvDLagSE~~~~ 249 (568)
T COG5059 174 VAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSG----TSETSKLSLVDLAGSERAAR 249 (568)
T ss_pred eecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCcc----ceecceEEEEeeccccccch
Confidence 99999999999999999999999999999999999999999999999987754332 23337999999999998 45
Q ss_pred ccccchhhhhhhhcccchHHHHHHHHHHhc-CCCCcccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHHHHHHH
Q 002982 280 AETTGVRRKEGSYINKSLLTLGTVISKLTD-GRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETHNTLKF 358 (861)
Q Consensus 280 t~~~G~rlkEg~~INkSL~aLg~VI~ALs~-~k~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISPs~~~~eETLsTLrF 358 (861)
++..+.|++||..||+||++||+||.+|.+ ++..|||||+|||||+||++|||+++|+|||||+|...++++|++||+|
T Consensus 250 ~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~ 329 (568)
T COG5059 250 TGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKF 329 (568)
T ss_pred hhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHH
Confidence 678999999999999999999999999987 4568999999999999999999999999999999999999999999999
Q ss_pred HHHcccccccccccc
Q 002982 359 AHRAKHIEILAAQNK 373 (861)
Q Consensus 359 AsRAk~Ikn~~~~N~ 373 (861)
|.||+.|++.+..|.
T Consensus 330 a~rak~I~~~~~~~~ 344 (568)
T COG5059 330 ASRAKSIKNKIQVNS 344 (568)
T ss_pred HHHHhhcCCcccccC
Confidence 999999999999995
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=8.2e-47 Score=381.79 Aligned_cols=178 Identities=39% Similarity=0.600 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccccCCccceeeEEEEEEecceeeeccCCCCCCceeeeCCCCeEEcc
Q 002982 124 VYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMHTPNREFLLRVSYLEIYNEVVNDLLNPAGQNLRIREDSQGTFVEG 203 (861)
Q Consensus 124 VY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~g~~~~f~V~vSylEIYnE~I~DLL~p~~~~L~Ired~~G~~V~g 203 (861)
||+.++ |+|+.+++|||+||||||||||||||||+|+..+ .|++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~--------------------------------~Gii--- 51 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREG--------------------------------AGII--- 51 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCC--------------------------------CCcc---
Confidence 999999 9999999999999999999999999999998511 1211
Q ss_pred cEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeeeeeeeeecCCCCC-ccccc
Q 002982 204 VKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGSES-SKAET 282 (861)
Q Consensus 204 Lse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~SkL~LVDLAGSEr-~kt~~ 282 (861)
-...++++.+|..|.++|.++.|.+|..|||||+||+|+|.+...... .......|+|+||||||||+ .+.+.
T Consensus 52 -----p~~~~~~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~-~~~~~~~s~l~lVDLAGsE~~~~~~~ 125 (186)
T cd01363 52 -----PRTVTDVIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALAS-ATEQPKVGKINLVDLAGSERIDFSGA 125 (186)
T ss_pred -----hHHHHHHHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCC-CccceeeeeEEEEEccccccccccCC
Confidence 012334999999999999999999999999999999999998754432 23456789999999999999 56778
Q ss_pred cchhhhhhhhcccchHHHHHHHHHHhcCCCCcccCCCCchhhhhhccCCCCccceeEEeeCC
Q 002982 283 TGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTP 344 (861)
Q Consensus 283 ~G~rlkEg~~INkSL~aLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISP 344 (861)
.+.+++|+++||+||.+|++||.+|+++ ..||||||||||+||||+|||||+|+||+||||
T Consensus 126 ~~~~~~e~~~in~sl~~L~~~i~~l~~~-~~~vpyr~SkLT~lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 126 EGSRLTETANINKSLSTLGNVISALAER-DSHVPYRESKLTRLLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred chhhHHHHHHHhhHHHHHHHHHHHHhcC-CCCCCCcccHHHHHHHHhcCCCCeEEEEEEeCc
Confidence 8999999999999999999999999985 479999999999999999999999999999998
No 30
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=97.49 E-value=1.1e-06 Score=103.94 Aligned_cols=231 Identities=23% Similarity=0.240 Sum_probs=132.6
Q ss_pred CCCCeEEEEecCCCChhhhccCCeEEE----ecCCCEEEeC----CCCCceeEeeceecCCCCcchhHHHHHHHHHHHHh
Q 002982 65 SKENVTVTVRFRPLSPREIRQGEEIAW----YADGETILRN----EDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGA 136 (861)
Q Consensus 65 ~~~~VkV~VRVRPl~~~E~~~g~~~~~----~~d~~~iv~~----~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~v 136 (861)
+..+++|+|+|+|........-....+ ..-..++..+ ...+...|.||.+|.+...+..++... ..+++..
T Consensus 303 G~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~ 381 (568)
T COG5059 303 GNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEIEILVFREQ-SQLSQSS 381 (568)
T ss_pred CCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhhhhhHHHHHH-Hhhhhhh
Confidence 344999999999988442110000000 0001111122 122334699999999999888888744 5667777
Q ss_pred hcCCCeeEEEecccCCCCccccccCCc----------------------cceeeEEEEEEecceeeeccCCCC-CCc-ee
Q 002982 137 MDGINGTIFAYGVTSSGKTHTMHTPNR----------------------EFLLRVSYLEIYNEVVNDLLNPAG-QNL-RI 192 (861)
Q Consensus 137 l~GyN~tIfAYGqTGSGKTyTM~g~~~----------------------~f~V~vSylEIYnE~I~DLL~p~~-~~L-~I 192 (861)
++| +++||++++|+++||..... .+...+-+++||-....+++.... .+. .+
T Consensus 382 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 457 (568)
T COG5059 382 LSG----IFAYMQSLKKETETLKSRIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREEELSKKKTKI 457 (568)
T ss_pred hhh----HHHHHhhhhhhhhcccchhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 777 99999999999999963221 122223333333111111111100 000 00
Q ss_pred eeC-CCCeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeeeeeeeee
Q 002982 193 RED-SQGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLID 271 (861)
Q Consensus 193 red-~~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~SkL~LVD 271 (861)
... .-+.-...+.........+...+. .....+..+.++.|..++++|.+|+....... .... . .. +++||
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~----~~~~-~-~~-~n~~~ 529 (568)
T COG5059 458 HKLNKLRHDLSSLLSSIPEETSDRVESE-KASKLRSSASTKLNLRSSRSHSKFRDHLNGSN----SSTK-E-LS-LNQVD 529 (568)
T ss_pred HHHHHHHHHHHHhhhhcchhhhhhhhhh-hhccchhhcccchhhhhcccchhhhhcccchh----hhhH-H-HH-hhhhh
Confidence 000 000000000011111111222222 45778889999999999999999987764211 1000 1 11 79999
Q ss_pred cCCCCCccccccchhhhhhhhcccchHHHHHHHHHHh
Q 002982 272 LAGSESSKAETTGVRRKEGSYINKSLLTLGTVISKLT 308 (861)
Q Consensus 272 LAGSEr~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs 308 (861)
|||+|+.-...-|.++++...+|++|.-+|.+|.++.
T Consensus 530 ~~~~e~~~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 530 LAGSERKVSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred ccccccchhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 9999987556778999999999999999999998763
No 31
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.48 E-value=0.99 Score=57.57 Aligned_cols=45 Identities=20% Similarity=0.170 Sum_probs=26.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHh
Q 002982 799 VSYEAALLEKDQQEAELQRKVEESKKREAYLENELANMWVLVAKL 843 (861)
Q Consensus 799 ~~le~~l~ek~~~e~el~~~~ee~k~~e~~lenelanmwvlvakl 843 (861)
..++..+.+.+..-.+++..+++.+.+-..|+++++.++.....+
T Consensus 458 ~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~~~~~~ 502 (1164)
T TIGR02169 458 EQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARAS 502 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555555666666666666667777777776654443
No 32
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.11 E-value=4.1 Score=52.13 Aligned_cols=15 Identities=27% Similarity=0.315 Sum_probs=12.3
Q ss_pred EEecccCCCCccccc
Q 002982 145 FAYGVTSSGKTHTMH 159 (861)
Q Consensus 145 fAYGqTGSGKTyTM~ 159 (861)
+-+|++|||||..|.
T Consensus 27 ~i~G~NGsGKS~ild 41 (1164)
T TIGR02169 27 VISGPNGSGKSNIGD 41 (1164)
T ss_pred EEECCCCCCHHHHHH
Confidence 348999999998764
No 33
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.95 E-value=0.7 Score=56.83 Aligned_cols=189 Identities=24% Similarity=0.313 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccCcccccccccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHHHH
Q 002982 557 LQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLND 636 (861)
Q Consensus 557 ~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~ik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~ 636 (861)
++.+|++|+.||+.-++.=.-|-.+|.. -..+.|-+..+|++.-.||++||-++..|.++...
T Consensus 423 LE~dvkkLraeLq~~Rq~E~ELRsqis~-----------------l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~ 485 (697)
T PF09726_consen 423 LEADVKKLRAELQSSRQSEQELRSQISS-----------------LTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQ 485 (697)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhh-----------------ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557888888887666655555555541 11235889999999999999999999999988643
Q ss_pred HHhhcCCCCcchhhhhhhhhccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhHHhHhhhhh-hhhhchhhhh
Q 002982 637 ALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDINEDSRLQVQAAEIEELNRKVTELTEAKEQL-ELRNQKLSEE 715 (861)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~e~e~lk~~~~~l~e~k~~l-~~~n~kl~ee 715 (861)
--. . .++.| .+|+.|...-.+.-.|| +.|.+|..||
T Consensus 486 DKq-----------------------------~-------------l~~LE-krL~eE~~~R~~lEkQL~eErk~r~~ee 522 (697)
T PF09726_consen 486 DKQ-----------------------------S-------------LQQLE-KRLAEERRQRASLEKQLQEERKARKEEE 522 (697)
T ss_pred HHH-----------------------------H-------------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 110 0 01111 11222222222222233 2344666677
Q ss_pred hhhhhhhhHHHH-----------------HHHHhhHHHHHHHhhhhhhHHHHHHhhcCCCcccccccccCCccccccccc
Q 002982 716 SSYAKGLASAAA-----------------VELKALSEEVAKLMNHKERLTAELAAAKSSPTQRRTSAVRNGRRDGQIKRQ 778 (861)
Q Consensus 716 ~~yak~lasaaa-----------------velk~l~eevtkl~~qn~~l~~el~~~~~~~~~~~~~~~~~~r~~~~~~~~ 778 (861)
.+-|+-+|.|++ -|+|.|--|....-.+...|..|+...|.-. .
T Consensus 523 ~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~-------------------~ 583 (697)
T PF09726_consen 523 EKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYE-------------------K 583 (697)
T ss_pred HhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------h
Confidence 766665544333 2566677777766777777777775555210 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh
Q 002982 779 NQDGSSLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESKK 824 (861)
Q Consensus 779 ~~~~~~~~~~~el~~~~~re~~le~~l~ek~~~e~el~~~~ee~k~ 824 (861)
+...+.+.|-..|++-.++-.-||..|+.--++--+|=.-+-|+|.
T Consensus 584 e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akr 629 (697)
T PF09726_consen 584 ESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKR 629 (697)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 2223789999999999999999999999888877777555544443
No 34
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.70 E-value=4.2 Score=51.84 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=12.9
Q ss_pred eEEEecccCCCCcccc
Q 002982 143 TIFAYGVTSSGKTHTM 158 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM 158 (861)
+..-+|++|||||..|
T Consensus 25 ~~~i~G~NGsGKS~ll 40 (1179)
T TIGR02168 25 ITGIVGPNGCGKSNIV 40 (1179)
T ss_pred cEEEECCCCCChhHHH
Confidence 4456899999999887
No 35
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.69 E-value=2.7 Score=53.56 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=10.9
Q ss_pred HHHhhHHHHHHHhhhhhhHHHHHHh
Q 002982 729 ELKALSEEVAKLMNHKERLTAELAA 753 (861)
Q Consensus 729 elk~l~eevtkl~~qn~~l~~el~~ 753 (861)
++..|.+++..+..+-..+..++..
T Consensus 867 ~~~~l~~~~~~~~~~~~~l~~~~~~ 891 (1179)
T TIGR02168 867 LIEELESELEALLNERASLEEALAL 891 (1179)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 36
>PRK09039 hypothetical protein; Validated
Probab=95.63 E-value=0.74 Score=52.07 Aligned_cols=52 Identities=29% Similarity=0.400 Sum_probs=45.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhcccCccCcccccccccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHHHHHH
Q 002982 563 KLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDAL 638 (861)
Q Consensus 563 ~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~ik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~~ 638 (861)
-|.++|.+++.+++.|+.+|.+ |-|.|..-...+..||+.|..|+.|+..+.
T Consensus 43 fLs~~i~~~~~eL~~L~~qIa~------------------------L~e~L~le~~~~~~l~~~l~~l~~~l~~a~ 94 (343)
T PRK09039 43 FLSREISGKDSALDRLNSQIAE------------------------LADLLSLERQGNQDLQDSVANLRASLSAAE 94 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5788999999999999999965 788888999999999999999999987543
No 37
>PRK11637 AmiB activator; Provisional
Probab=95.51 E-value=1.5 Score=50.68 Aligned_cols=66 Identities=18% Similarity=0.226 Sum_probs=31.1
Q ss_pred HHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHH
Q 002982 687 EIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELA 752 (861)
Q Consensus 687 e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~ 752 (861)
...+|..+..+|.+.+..++.+-.+|..+-.-.+.+-....-+++.+..++.+|..+-.+|.+.|+
T Consensus 185 ~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~ 250 (428)
T PRK11637 185 QKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIA 250 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555554443333333333444455555555555555555554443
No 38
>PRK11637 AmiB activator; Provisional
Probab=95.49 E-value=4.9 Score=46.56 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=12.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHh
Q 002982 800 SYEAALLEKDQQEAELQRKVEES 822 (861)
Q Consensus 800 ~le~~l~ek~~~e~el~~~~ee~ 822 (861)
.+++.|.+.++.+..|.+.|++.
T Consensus 230 ~~~~~l~~l~~~~~~L~~~I~~l 252 (428)
T PRK11637 230 KDQQQLSELRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555666555543
No 39
>PRK02224 chromosome segregation protein; Provisional
Probab=95.26 E-value=11 Score=47.32 Aligned_cols=14 Identities=36% Similarity=0.544 Sum_probs=11.6
Q ss_pred EEecccCCCCcccc
Q 002982 145 FAYGVTSSGKTHTM 158 (861)
Q Consensus 145 fAYGqTGSGKTyTM 158 (861)
+-+|++|||||..+
T Consensus 27 ~i~G~Ng~GKStil 40 (880)
T PRK02224 27 VIHGVNGSGKSSLL 40 (880)
T ss_pred EEECCCCCCHHHHH
Confidence 34899999998765
No 40
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.11 E-value=0.94 Score=54.22 Aligned_cols=82 Identities=24% Similarity=0.264 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccCcccccc----------cccchhhhHHHHHHhHHhhhhhHHH
Q 002982 556 QLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQ----------VKAADNRIIQEQLNQKICECEGLQE 625 (861)
Q Consensus 556 ~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~----------ik~adnrilqeql~~k~~e~~elqe 625 (861)
+....++.|.++-...+.|+..||..|..-..+--+. ..+... +|+|---+|=.-|.--..-+..||.
T Consensus 179 ~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t--~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~ 256 (629)
T KOG0963|consen 179 EWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDT--QNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLER 256 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888998899999999999886442221111 111221 4444433444445445566778999
Q ss_pred HHHHHHHHHHHHHh
Q 002982 626 TIGFLKQQLNDALE 639 (861)
Q Consensus 626 ~v~~l~qql~~~~~ 639 (861)
.|..|++|+..+-+
T Consensus 257 e~e~L~~ql~~~N~ 270 (629)
T KOG0963|consen 257 EVEQLREQLAKANS 270 (629)
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999877543
No 41
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.92 E-value=0.63 Score=51.78 Aligned_cols=127 Identities=24% Similarity=0.303 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcCCCcc
Q 002982 681 LQVQAAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKSSPTQ 760 (861)
Q Consensus 681 ~~~q~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~~~~~~~~~ 760 (861)
++.-+.|+..|+.+..+|..+...+|.+-|.|..+ -+|+|+ .|-..+..|++|+++-+..|.+.-.|+.....--.
T Consensus 169 lk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~d--cv~QL~-~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqiv- 244 (306)
T PF04849_consen 169 LKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLD--CVKQLS-EANQQIASLSEELARKTEENRRQQEEITSLLSQIV- 244 (306)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHH--HHHHhh-hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 44457789999999999999999999999999998 489995 56789999999999999999999888876652110
Q ss_pred cccccccCCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 002982 761 RRTSAVRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEES 822 (861)
Q Consensus 761 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~el~~~~~re~~le~~l~ek~~~e~el~~~~ee~ 822 (861)
+--.|=+.-....++|+.-|++.++....|-+=|.+=..+=+|...-+.|+
T Consensus 245 -----------dlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~Ea 295 (306)
T PF04849_consen 245 -----------DLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEA 295 (306)
T ss_pred -----------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000011122235678888888888888888777766666666655555554
No 42
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.83 E-value=13 Score=48.68 Aligned_cols=52 Identities=25% Similarity=0.315 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhh
Q 002982 784 SLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESKKREAYLENELAN 835 (861)
Q Consensus 784 ~~~~~~el~~~~~re~~le~~l~ek~~~e~el~~~~ee~k~~e~~lenelan 835 (861)
..+++.++......-..|+..|........+|.+.+++...+=..++.+.+.
T Consensus 858 ~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 909 (1163)
T COG1196 858 LEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEK 909 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667776666667777777777777777777777766666666554443
No 43
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.70 E-value=5.2 Score=47.40 Aligned_cols=68 Identities=13% Similarity=0.171 Sum_probs=53.6
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhHHHHhHHHHhcCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 002982 517 IDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSI 586 (861)
Q Consensus 517 ~d~~dllreq~k~l~geva~~~s~lkrl~e~a~~~p~~~~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~ 586 (861)
-.+++.|..|+..+.++++-....+.++.++.. ..-..++.++..+.++....+.|+..|+..|.+..
T Consensus 180 ~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~--~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~ 247 (562)
T PHA02562 180 NQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNG--ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLV 247 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788888888888888877777777766554 44556777888999999999999999999987766
No 44
>PRK02224 chromosome segregation protein; Provisional
Probab=94.55 E-value=6.7 Score=49.30 Aligned_cols=29 Identities=17% Similarity=0.223 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhHHHHhH
Q 002982 517 IDQIDLLREQQKILAGEVALHSSALKRLS 545 (861)
Q Consensus 517 ~d~~dllreq~k~l~geva~~~s~lkrl~ 545 (861)
.++++-|++....+-+.+.+....|+.+-
T Consensus 418 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 446 (880)
T PRK02224 418 REERDELREREAELEATLRTARERVEEAE 446 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777778888888888877775
No 45
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.06 E-value=7.9 Score=45.06 Aligned_cols=52 Identities=29% Similarity=0.389 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------HHHHHhhhhHHHHHhhhhhHH
Q 002982 786 DLKRELALSREREVSYEAALLEKDQQEAELQ-------RKVEESKKREAYLENELANMW 837 (861)
Q Consensus 786 ~~~~el~~~~~re~~le~~l~ek~~~e~el~-------~~~ee~k~~e~~lenelanmw 837 (861)
+|+.=+.+..++...|+.++.|+...+++|. ++++|-+..+..|++++|..=
T Consensus 186 ~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 186 ELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3344444666666777777888777776664 456666677777777776654
No 46
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.01 E-value=18 Score=43.51 Aligned_cols=85 Identities=27% Similarity=0.328 Sum_probs=57.3
Q ss_pred HHHhhHHHHHHH-------hhhhhhHHHHHHhhcCCCcccccccccCCcccccccccCCCCChHHHHHHHHHHHHHHHHH
Q 002982 729 ELKALSEEVAKL-------MNHKERLTAELAAAKSSPTQRRTSAVRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSY 801 (861)
Q Consensus 729 elk~l~eevtkl-------~~qn~~l~~el~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~el~~~~~re~~l 801 (861)
++-.|+-|+-.+ -.++.||..+|.-.++ ++|+ -+.|.++||.. -+++|
T Consensus 372 ~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D--~n~v--------------------qlsE~~rel~E---lks~l 426 (546)
T PF07888_consen 372 EIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKD--CNRV--------------------QLSENRRELQE---LKSSL 426 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHH--------------------HHHHHHHHHHH---HHHHH
Confidence 444555555332 2378899999864442 1111 35577888874 56788
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHH
Q 002982 802 EAALLEKDQQEAELQRKVEESKKREAYLENELANMWV 838 (861)
Q Consensus 802 e~~l~ek~~~e~el~~~~ee~k~~e~~lenelanmwv 838 (861)
..+=+||+|+-+|-|--.+...+=|+-|+------|-
T Consensus 427 rv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~~~~ 463 (546)
T PF07888_consen 427 RVAQKEKEQLQEEKQELLEYIERLEQRLDKVADEKWK 463 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 8888999999999888888888888877765444453
No 47
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.90 E-value=30 Score=46.03 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=10.8
Q ss_pred HHHHHHHHHhhhhHHHHHhhhhhH
Q 002982 813 AELQRKVEESKKREAYLENELANM 836 (861)
Q Consensus 813 ~el~~~~ee~k~~e~~lenelanm 836 (861)
.+++++|++...++..|...|..+
T Consensus 1001 ~~l~kel~~~~~~kr~l~dnL~~~ 1024 (1311)
T TIGR00606 1001 RLMRQDIDTQKIQERWLQDNLTLR 1024 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444
No 48
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.69 E-value=3.1 Score=49.22 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=27.1
Q ss_pred chhhhHHHHHHhHHhhhhhHHHHHHHHHHHHHHH
Q 002982 604 ADNRIIQEQLNQKICECEGLQETIGFLKQQLNDA 637 (861)
Q Consensus 604 adnrilqeql~~k~~e~~elqe~v~~l~qql~~~ 637 (861)
++...+++++..-..++..++..+..|+.+|.+.
T Consensus 213 ~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 213 ENIARKQNKYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788888888888888888888888888664
No 49
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.66 E-value=3.1 Score=43.53 Aligned_cols=57 Identities=26% Similarity=0.377 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhc
Q 002982 685 AAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAK 755 (861)
Q Consensus 685 ~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~~~~ 755 (861)
..|+|.||.-...|-|++.+|-.++.-|-.| -..|..+|..|-.+|.||..|..-.+
T Consensus 66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE--------------~q~L~~~i~~Lqeen~kl~~e~~~lk 122 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSLLAQARQLEKE--------------QQSLVAEIETLQEENGKLLAERDGLK 122 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhHHHHhhhhHH
Confidence 5699999999999999999998887766554 46789999999999999988877555
No 50
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.02 E-value=17 Score=45.11 Aligned_cols=241 Identities=20% Similarity=0.252 Sum_probs=121.7
Q ss_pred ccccchhhHHHHHHHHHHhhhhhhhhhhHHHHhHHHHhcCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccC
Q 002982 512 TSIKTIDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHN 591 (861)
Q Consensus 512 ~~~~~~d~~dllreq~k~l~geva~~~s~lkrl~e~a~~~p~~~~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~ 591 (861)
......|.+.-|.-=+|-|-.|+. --|..|+--++=-..... -=..++-||..++.+...|+.+|.+-..+=+
T Consensus 412 ~~~~~~~a~~rLE~dvkkLraeLq-----~~Rq~E~ELRsqis~l~~-~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq- 484 (697)
T PF09726_consen 412 AQNSEPDAISRLEADVKKLRAELQ-----SSRQSEQELRSQISSLTN-NERSLKSELSQLRQENEQLQNKLQNLVQARQ- 484 (697)
T ss_pred ccccChHHHHHHHHHHHHHHHHHH-----hhhhhHHHHHHHHhhccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 345557888888888888888877 445555544432110000 0124556666666666666666655444322
Q ss_pred ccCcccccccccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhhhhccccccccchhhhhh
Q 002982 592 TMDNSEVSQVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIAL 671 (861)
Q Consensus 592 ~~~~~~~~~ik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (861)
.|++.+ .+|..| ..+.|+.-+.|+.||..-=.++.--.. .+..+-... .....+
T Consensus 485 ----~DKq~l---------~~LEkr---L~eE~~~R~~lEkQL~eErk~r~~ee~------~aar~~~~~-~~~r~e--- 538 (697)
T PF09726_consen 485 ----QDKQSL---------QQLEKR---LAEERRQRASLEKQLQEERKARKEEEE------KAARALAQA-QATRQE--- 538 (697)
T ss_pred ----HHHHHH---------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHH------hhhhccccc-hhccch---
Confidence 233222 123333 234444555666666543222110000 000000000 000001
Q ss_pred hhhhhhh--HHHHHHHHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHH
Q 002982 672 LKDINED--SRLQVQAAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTA 749 (861)
Q Consensus 672 ~~~~~~~--~~~~~q~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~ 749 (861)
-.+- ...+..+.|+..|..|.....|.+..||...|.|-.-. || -..|.-.|-..+.-|-..|..|+.
T Consensus 539 ---~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~---~e----~~~~~e~L~~aL~amqdk~~~LE~ 608 (697)
T PF09726_consen 539 ---CAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYE---KE----SEKDTEVLMSALSAMQDKNQHLEN 608 (697)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hh----hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 1111 12344578888888888888888888888775444311 32 123444566666667777888888
Q ss_pred HHHhhcCCCcccccccccCCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 002982 750 ELAAAKSSPTQRRTSAVRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEE 821 (861)
Q Consensus 750 el~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~el~~~~~re~~le~~l~ek~~~e~el~~~~ee 821 (861)
-|.+-. +.| .|=+....|-|++|. .++..|..||+-=.||+.||.|
T Consensus 609 sLsaEt------------------riK-ldLfsaLg~akrq~e-------i~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 609 SLSAET------------------RIK-LDLFSALGDAKRQLE-------IAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred hhhHHH------------------HHH-HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 877532 111 122223334444444 5677777777666666666544
No 51
>PRK03918 chromosome segregation protein; Provisional
Probab=92.98 E-value=19 Score=45.14 Aligned_cols=15 Identities=27% Similarity=0.499 Sum_probs=12.1
Q ss_pred EEecccCCCCccccc
Q 002982 145 FAYGVTSSGKTHTMH 159 (861)
Q Consensus 145 fAYGqTGSGKTyTM~ 159 (861)
+-+|++|||||..|.
T Consensus 27 ~i~G~nG~GKStil~ 41 (880)
T PRK03918 27 LIIGQNGSGKSSILE 41 (880)
T ss_pred EEEcCCCCCHHHHHH
Confidence 368999999987763
No 52
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=92.93 E-value=33 Score=45.19 Aligned_cols=71 Identities=24% Similarity=0.361 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhc
Q 002982 685 AAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAK 755 (861)
Q Consensus 685 ~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~~~~ 755 (861)
..+++.+......+.+..+.++.+-++...+-.=++.-.+-+.+++++.-.++..|.++-..|..++..++
T Consensus 606 ~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 676 (1201)
T PF12128_consen 606 RERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAK 676 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666655555555556666666667777777777777666666666665555
No 53
>PRK06893 DNA replication initiation factor; Validated
Probab=92.55 E-value=0.099 Score=55.23 Aligned_cols=47 Identities=17% Similarity=0.255 Sum_probs=32.7
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCcccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMHT 160 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~g 160 (861)
.++||..++... ..- +..+...+-.++|..++-||++|+||||.+..
T Consensus 12 ~~~fd~f~~~~~-~~~-----~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 12 DETLDNFYADNN-LLL-----LDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred cccccccccCCh-HHH-----HHHHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 589999996553 211 22223333457888899999999999999863
No 54
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.52 E-value=19 Score=47.72 Aligned_cols=75 Identities=12% Similarity=0.187 Sum_probs=38.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccCcccccc------cc--cchhhhHHHHHHhHHhhhhhHHHHHHHHHH
Q 002982 561 IKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQ------VK--AADNRIIQEQLNQKICECEGLQETIGFLKQ 632 (861)
Q Consensus 561 ~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~------ik--~adnrilqeql~~k~~e~~elqe~v~~l~q 632 (861)
|..+..||...+.||..|+.....++.. ...+.++-.. +. .+.+--+|++.+....++.+||.++..++.
T Consensus 794 i~r~~~ei~~l~~qie~l~~~l~~~~~~--~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~ 871 (1311)
T TIGR00606 794 MERFQMELKDVERKIAQQAAKLQGSDLD--RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKS 871 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666654442 1112222111 11 122333566666666666666666665555
Q ss_pred HHHHH
Q 002982 633 QLNDA 637 (861)
Q Consensus 633 ql~~~ 637 (861)
....+
T Consensus 872 ~klkl 876 (1311)
T TIGR00606 872 EKLQI 876 (1311)
T ss_pred HHHHH
Confidence 54444
No 55
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=92.38 E-value=39 Score=42.64 Aligned_cols=123 Identities=23% Similarity=0.221 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHhhHHhHhhhhhhhhh---chhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcCC
Q 002982 681 LQVQAAEIEELNRKVTELTEAKEQLELRN---QKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKSS 757 (861)
Q Consensus 681 ~~~q~~e~e~lk~~~~~l~e~k~~l~~~n---~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~~~~~~ 757 (861)
...++..+++||-+..+|.++...|--+| +|=.|=+--++. -+.-+..||++-|++|..+=.++..-.......
T Consensus 419 ~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~---~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~ 495 (980)
T KOG0980|consen 419 ALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSID---DVEEENTNLNDQLEELQRAAGRAETKTESQAKA 495 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34567788899988888888887775444 222222222333 456677888888888887765533221111100
Q ss_pred CcccccccccCCcccccccccCCC---CChHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHHHHH
Q 002982 758 PTQRRTSAVRNGRRDGQIKRQNQD---GSSLDLKRELALSRERE----VSYEAALLEKDQQEAELQRKVEE 821 (861)
Q Consensus 758 ~~~~~~~~~~~~r~~~~~~~~~~~---~~~~~~~~el~~~~~re----~~le~~l~ek~~~e~el~~~~ee 821 (861)
- -.-|++-. .-++.|++.+.-..|+. +-||+.|.+||..=+++..+.+|
T Consensus 496 l---------------e~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~e 551 (980)
T KOG0980|consen 496 L---------------ESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVAREEE 551 (980)
T ss_pred H---------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 0 00000000 02345555555445554 56888999999988888887753
No 56
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=92.29 E-value=0.075 Score=55.98 Aligned_cols=50 Identities=26% Similarity=0.490 Sum_probs=31.0
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCcccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMHT 160 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~g 160 (861)
.|+||..+.. ..++.+|. .+..+...--..||. +|-||++|+||||-|..
T Consensus 4 ~~tFdnfv~g-~~N~~a~~-~~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~A 53 (219)
T PF00308_consen 4 KYTFDNFVVG-ESNELAYA-AAKAIAENPGERYNP-LFLYGPSGLGKTHLLQA 53 (219)
T ss_dssp T-SCCCS--T-TTTHHHHH-HHHHHHHSTTTSSSE-EEEEESTTSSHHHHHHH
T ss_pred CCccccCCcC-CcHHHHHH-HHHHHHhcCCCCCCc-eEEECCCCCCHHHHHHH
Confidence 5999987754 34566665 334454442223444 78899999999998863
No 57
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.19 E-value=5.9 Score=43.54 Aligned_cols=142 Identities=25% Similarity=0.201 Sum_probs=77.1
Q ss_pred CCChHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHh---hhhcccCcc------Ccccc-------cccccchhhhHH
Q 002982 551 NPQKEQLQVEIKKLRDEIKGKNDQIAL----LEKQIAD---SIMTSHNTM------DNSEV-------SQVKAADNRIIQ 610 (861)
Q Consensus 551 ~p~~~~~~~~~~~l~~ei~~k~~qi~~----le~~i~~---s~~~s~~~~------~~~~~-------~~ik~adnrilq 610 (861)
.-+..+++.+|+.|+.||.+-++.|.. |+.|.-- .|.++.+-- +-.|| ++|-.||.-||.
T Consensus 72 ~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile 151 (265)
T COG3883 72 QKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILE 151 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHH
Confidence 334455666666666666666666653 3333221 112211100 11122 228899999998
Q ss_pred HHHHhHHhhhhhHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhhhhccccccccchhhhhhhhhhhhhHHHHHHHHHHHH
Q 002982 611 EQLNQKICECEGLQETIGFLKQQLNDALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDINEDSRLQVQAAEIEE 690 (861)
Q Consensus 611 eql~~k~~e~~elqe~v~~l~qql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~e~e~ 690 (861)
.|-..|. ++.+.|..+..-.++|-.+.... . . . -..-+.+...+..-|-.
T Consensus 152 ~qk~dk~-~Le~kq~~l~~~~e~l~al~~e~------------------e----~--~-----~~~L~~qk~e~~~l~~~ 201 (265)
T COG3883 152 QQKEDKK-SLEEKQAALEDKLETLVALQNEL------------------E----T--Q-----LNSLNSQKAEKNALIAA 201 (265)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH------------------H----H--H-----HHHHHHHHHHHHHHHHH
Confidence 8776653 44555555544444443322110 0 0 0 00001133445667888
Q ss_pred HHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhh
Q 002982 691 LNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKAL 733 (861)
Q Consensus 691 lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l 733 (861)
|+++...+.+++..|+ -.|.||.++|-+.++=
T Consensus 202 ~aa~~a~~~~e~a~l~-----------~qka~a~a~a~~~a~~ 233 (265)
T COG3883 202 LAAKEASALGEKAALE-----------EQKALAEAAAAEAAKQ 233 (265)
T ss_pred HHHHHHHhHHHHHHHH-----------HHHHHHHHHHHHHHHh
Confidence 9999999999999998 3466666666666653
No 58
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.95 E-value=50 Score=42.95 Aligned_cols=102 Identities=24% Similarity=0.282 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccCcccccccccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHHHH
Q 002982 557 LQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLND 636 (861)
Q Consensus 557 ~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~ik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~ 636 (861)
+..++.++.-+++.-..+|+.||++|.+-=.+... ...+. .+=+.+|+|+..=-.|..++||+-+. |+|+..
T Consensus 818 l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k--~~~d~-----~~l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~ 889 (1293)
T KOG0996|consen 818 LENRLEKLTASVKRLAELIEYLESQIAELEAAVLK--KVVDK-----KRLKELEEQIEELKKEVEELQEKAAK-KARIKE 889 (1293)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--ccCcH-----HHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHH
Confidence 33345566666666666777777777643222110 01111 11255566666656666666665555 555433
Q ss_pred HHhhcCCCCcchhhhhhhhhccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhHH
Q 002982 637 ALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDINEDSRLQVQAAEIEELNRKVTEL 698 (861)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~e~e~lk~~~~~l 698 (861)
.- ..-+....-+++.|..+++++.++...|
T Consensus 890 lq--------------------------------~~i~~i~~e~~q~qk~kv~~~~~~~~~l 919 (1293)
T KOG0996|consen 890 LQ--------------------------------NKIDEIGGEKVQAQKDKVEKINEQLDKL 919 (1293)
T ss_pred HH--------------------------------HHHHHhhchhhHHhHHHHHHHHHHHHHH
Confidence 20 0112233345677788888877777666
No 59
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=91.84 E-value=0.22 Score=58.69 Aligned_cols=68 Identities=28% Similarity=0.432 Sum_probs=48.3
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccc----------------------------
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH---------------------------- 159 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~---------------------------- 159 (861)
.|....-|.|.-+|-.- +..+|+.+-.|.-.-+ -.|.|||||||||-
T Consensus 4 ~F~l~s~f~PaGDQP~A----I~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk 78 (663)
T COG0556 4 PFKLHSPFKPAGDQPEA----IAELVEGIENGLKHQT-LLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFK 78 (663)
T ss_pred ceEeccCCCCCCCcHHH----HHHHHHHHhcCceeeE-EeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHHH
Confidence 47777888898888653 4566777666665444 36999999999994
Q ss_pred --cCCccceeeEEEEEEecceee
Q 002982 160 --TPNREFLLRVSYLEIYNEVVN 180 (861)
Q Consensus 160 --g~~~~f~V~vSylEIYnE~I~ 180 (861)
-|+....-.|||+.-|.-.-|
T Consensus 79 ~fFP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 79 EFFPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred HhCcCcceEEEeeeccccCcccc
Confidence 234445678999998865443
No 60
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=91.56 E-value=40 Score=44.30 Aligned_cols=30 Identities=27% Similarity=0.384 Sum_probs=22.1
Q ss_pred HHHHHHhhHHHHHHHhhhhhhHHHHHHhhc
Q 002982 726 AAVELKALSEEVAKLMNHKERLTAELAAAK 755 (861)
Q Consensus 726 aavelk~l~eevtkl~~qn~~l~~el~~~~ 755 (861)
+--++..|.++.++|+.+.+.+..++....
T Consensus 402 l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 431 (1163)
T COG1196 402 LKREIESLEERLERLSERLEDLKEELKELE 431 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777788888888877777666
No 61
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=91.39 E-value=16 Score=49.31 Aligned_cols=197 Identities=26% Similarity=0.337 Sum_probs=127.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCc----c--Ccccccc------------cccchhhhHHHHHHhHHhhhh
Q 002982 560 EIKKLRDEIKGKNDQIALLEKQIADSIMTSHNT----M--DNSEVSQ------------VKAADNRIIQEQLNQKICECE 621 (861)
Q Consensus 560 ~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~----~--~~~~~~~------------ik~adnrilqeql~~k~~e~~ 621 (861)
++..++.|....++|+++|++-|-+ ...+-.. . +.+=+.+ +--=+|+||++-+.....-|+
T Consensus 1168 k~~~lk~e~~~L~qq~~~~~k~i~d-L~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~q 1246 (1822)
T KOG4674|consen 1168 KLDTLKRENARLKQQVASLNRTIDD-LQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQ 1246 (1822)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3445566677778888888775433 2222111 0 1111111 334689999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhhhhccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhHHhHh
Q 002982 622 GLQETIGFLKQQLNDALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDINEDSRLQVQAAEIEELNRKVTELTEA 701 (861)
Q Consensus 622 elqe~v~~l~qql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~e~e~lk~~~~~l~e~ 701 (861)
||+++|..|+.-+...-. .+..-.++|.....++..|-++
T Consensus 1247 El~~~i~kl~~el~plq~----------------------------------------~l~el~~e~~~~~ael~~l~~e 1286 (1822)
T KOG4674|consen 1247 ELRDKIEKLNFELAPLQN----------------------------------------ELKELKAELQEKVAELKKLEEE 1286 (1822)
T ss_pred HHHHHHHHHHhhHhhHHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988654210 0112245566666666666677
Q ss_pred hhhhhhhhchhhhh------hhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcCCCcccccccccCCcccccc
Q 002982 702 KEQLELRNQKLSEE------SSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKSSPTQRRTSAVRNGRRDGQI 775 (861)
Q Consensus 702 k~~l~~~n~kl~ee------~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~~~~~~~~~~~~~~~~~~r~~~~~ 775 (861)
.+.-..|||=|.+= ..|=| |++ |..+|.+|.+-.-++|+-|..+|--.|+.. .
T Consensus 1287 ~~~wK~R~q~L~~k~k~~d~~~~~k-L~~----ei~~Lk~el~~ke~~~~el~~~~~~~q~~~----------------k 1345 (1822)
T KOG4674|consen 1287 NDRWKQRNQDLLEKYKDSDKNDYEK-LKS----EISRLKEELEEKENLIAELKKELNRLQEKI----------------K 1345 (1822)
T ss_pred HHHHHHHHHHHHHHhhcCCHHHHHH-HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------H
Confidence 77777777766654 33433 444 999999999988888888888888766221 1
Q ss_pred cccCCCC-ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 002982 776 KRQNQDG-SSLDLKRELALSREREVSYEAALLEKDQQEAELQRK 818 (861)
Q Consensus 776 ~~~~~~~-~~~~~~~el~~~~~re~~le~~l~ek~~~e~el~~~ 818 (861)
.+-|... ...++.+++..-..---.|++++.|+-..+-|+..+
T Consensus 1346 ~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q~~el~~~ 1389 (1822)
T KOG4674|consen 1346 KQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQELELSDK 1389 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 345667777766666678999999988887676554
No 62
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=91.06 E-value=20 Score=48.89 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 002982 554 KEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIM 587 (861)
Q Consensus 554 ~~~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~ 587 (861)
+..++.+.++++++|.+.+.+|+-+|.-+...-.
T Consensus 924 ~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~ 957 (1930)
T KOG0161|consen 924 NAELERKKRKLEQEVQELKEQLEELELTLQKLEL 957 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778888999999999999999887766543
No 63
>PRK09039 hypothetical protein; Validated
Probab=90.67 E-value=7.1 Score=44.32 Aligned_cols=42 Identities=24% Similarity=0.285 Sum_probs=29.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh
Q 002982 783 SSLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESKK 824 (861)
Q Consensus 783 ~~~~~~~el~~~~~re~~le~~l~ek~~~e~el~~~~ee~k~ 824 (861)
.+.-|+.++.+=+..=++||++|.+-+.+.++.+.+|++-++
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~ 179 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGR 179 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666677888887777777777777777644
No 64
>PRK06620 hypothetical protein; Validated
Probab=90.52 E-value=0.12 Score=54.36 Aligned_cols=49 Identities=29% Similarity=0.409 Sum_probs=32.9
Q ss_pred eeEeeceecCCCCcchhHHHHHHHHHHHHhhcCCC---eeEEEecccCCCCccccc
Q 002982 107 IAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGIN---GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 107 ~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN---~tIfAYGqTGSGKTyTM~ 159 (861)
..|+||..+...++ ...|..+. .+.+. . |+| -.+|-||++|+||||.+.
T Consensus 11 ~~~tfd~Fvvg~~N-~~a~~~~~-~~~~~-~-~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 11 SKYHPDEFIVSSSN-DQAYNIIK-NWQCG-F-GVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCchhhEecccH-HHHHHHHH-HHHHc-c-ccCCCcceEEEECCCCCCHHHHHH
Confidence 35899987765544 45676443 23321 1 444 358999999999999997
No 65
>PRK04863 mukB cell division protein MukB; Provisional
Probab=90.47 E-value=73 Score=43.09 Aligned_cols=212 Identities=18% Similarity=0.175 Sum_probs=117.0
Q ss_pred hHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhhhhccccccccchhhhhhhhhhhhhH--HHHHHH
Q 002982 608 IIQEQLNQKICECEGLQETIGFLKQQLNDALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDINEDS--RLQVQA 685 (861)
Q Consensus 608 ilqeql~~k~~e~~elqe~v~~l~qql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~q~ 685 (861)
.++++++....+..++|..+..+++++...-.++.. -+.++.+ .....+..+.+ ++....
T Consensus 394 eLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~----------~~~~~~S--------dEeLe~~LenF~aklee~e 455 (1486)
T PRK04863 394 ELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQL----------CGLPDLT--------ADNAEDWLEEFQAKEQEAT 455 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hCCCCCC--------HHHHHHHHHHHHHHHHHHH
Confidence 355555555666666666666666666554433311 1111111 11122223333 344457
Q ss_pred HHHHHHHHHhhHHhHhhhhhhhhhchhhhh-hhhhhhhhHHHH-------HHHHhhHHHHHHHhhhhhhHHHHHHhhcCC
Q 002982 686 AEIEELNRKVTELTEAKEQLELRNQKLSEE-SSYAKGLASAAA-------VELKALSEEVAKLMNHKERLTAELAAAKSS 757 (861)
Q Consensus 686 ~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee-~~yak~lasaaa-------velk~l~eevtkl~~qn~~l~~el~~~~~~ 757 (861)
.++.+|+++...+....++++.....+.-+ -.-.-.=|.-+| -+++.|++-+--|-.+=..|...|...+..
T Consensus 456 ~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~q~~~ 535 (1486)
T PRK04863 456 EELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRA 535 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888888888776665433 222333333334 456777777776666666666655544321
Q ss_pred CcccccccccCCcccccccccC-CCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhH
Q 002982 758 PTQRRTSAVRNGRRDGQIKRQN-QDGSSLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESKKREAYLENELANM 836 (861)
Q Consensus 758 ~~~~~~~~~~~~r~~~~~~~~~-~~~~~~~~~~el~~~~~re~~le~~l~ek~~~e~el~~~~ee~k~~e~~lenelanm 836 (861)
. | ......+|.. +..+.+++........++--.|+..+.+-..+-.+++.+.++-+++=..|+. +|--
T Consensus 536 ~--~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~-~ap~ 604 (1486)
T PRK04863 536 E--R--------LLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAA-RAPA 604 (1486)
T ss_pred H--H--------HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChH
Confidence 1 0 0011111222 2224556655554444444577788888888888888888888888887776 4555
Q ss_pred HHH----HHHhhhcCC
Q 002982 837 WVL----VAKLKKSHG 848 (861)
Q Consensus 837 wvl----vaklkk~~~ 848 (861)
|.= +.+|.-.-|
T Consensus 605 W~~a~~al~~L~eq~g 620 (1486)
T PRK04863 605 WLAAQDALARLREQSG 620 (1486)
T ss_pred HHhhHHHHHHHHHhcc
Confidence 752 455543334
No 66
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.80 E-value=19 Score=44.80 Aligned_cols=113 Identities=28% Similarity=0.312 Sum_probs=65.4
Q ss_pred cchhhHHHHHHHHHHhhhhhhhhhhHHHHhHHHHhcCCChHHHHHHHHHHHHHHHhHHHHHHHHHHH------HHhhhhc
Q 002982 515 KTIDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQ------IADSIMT 588 (861)
Q Consensus 515 ~~~d~~dllreq~k~l~geva~~~s~lkrl~e~a~~~p~~~~~~~~~~~l~~ei~~k~~qi~~le~~------i~~s~~~ 588 (861)
.+-||.|+|+-|+++.+ +.+--+++.|-.+|.... ++..+.-|++.-.++--.|++. .++++.+
T Consensus 703 ql~~q~~~Lk~qLg~~~-------~~~~~~~q~~e~~~t~~e---el~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~ 772 (970)
T KOG0946|consen 703 QLKDQLDLLKNQLGIIS-------SKQRDLLQGAEASKTQNE---ELNAALSENKKLENDQELLTKELNKKNADIESFKA 772 (970)
T ss_pred HHHHHHHHHHHHhcccc-------cchhhHHhHHHhccCChH---HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 56678888888777543 445566666655554433 3455566666555333333332 3444444
Q ss_pred ccCccCcccccccccchhhhHHHHHHhHHh-------hhhhHHHHHHHHHHHHHHHHhh
Q 002982 589 SHNTMDNSEVSQVKAADNRIIQEQLNQKIC-------ECEGLQETIGFLKQQLNDALEL 640 (861)
Q Consensus 589 s~~~~~~~~~~~ik~adnrilqeql~~k~~-------e~~elqe~v~~l~qql~~~~~~ 640 (861)
+.- .-+.+|=+.+||--.|||+.+-.+ -+.++|-++..+|+|.++.++.
T Consensus 773 ~~~---~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~~~q~e~~~~keq~~t~~~~ 828 (970)
T KOG0946|consen 773 TQR---SAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQELQSELTQLKEQIQTLLER 828 (970)
T ss_pred HHh---hhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 234455556666667777665433 3667777888888887776653
No 67
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=89.70 E-value=36 Score=37.46 Aligned_cols=59 Identities=32% Similarity=0.303 Sum_probs=43.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHhh
Q 002982 783 SSLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESKKREAYLENELANMWVLVAKLK 844 (861)
Q Consensus 783 ~~~~~~~el~~~~~re~~le~~l~ek~~~e~el~~~~ee~k~~e~~lenelanmwvlvaklk 844 (861)
.+..|+.|+..-+.+-.+||..|.+- +.++....+.-...-..||.||+.|+.=++..-
T Consensus 224 ~~~~l~~el~~l~~~~~~Le~~l~~l---e~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 224 QIQSLQAELESLRAKNASLERQLREL---EQRLDEEREEYQAEIAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhhhhccccchhhhhhhHHHH---HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence 34567777777777888888888764 456667777777778889999998887766543
No 68
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.60 E-value=0.2 Score=55.76 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=28.1
Q ss_pred HHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 129 AQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 129 ~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
..|++..+.+--++.|+..|+||||||.||-
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 4678888899999999999999999999984
No 69
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=89.52 E-value=67 Score=40.31 Aligned_cols=35 Identities=9% Similarity=0.174 Sum_probs=27.9
Q ss_pred hHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHhhcC
Q 002982 608 IIQEQLNQKICECEGLQETIGFLKQQLNDALELRN 642 (861)
Q Consensus 608 ilqeql~~k~~e~~elqe~v~~l~qql~~~~~~~~ 642 (861)
-+.+|+|+|+.|+.++--..-.+-+|+-.++..++
T Consensus 180 ~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD 214 (1265)
T KOG0976|consen 180 EFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKD 214 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 45789999999998888877778888877776664
No 70
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.51 E-value=0.33 Score=57.07 Aligned_cols=30 Identities=30% Similarity=0.331 Sum_probs=25.9
Q ss_pred HHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 130 QHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 130 ~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
...+..++..-+|.|+.-|+||||||.||+
T Consensus 247 ~~~~~~~~~~p~GliLvTGPTGSGKTTTLY 276 (500)
T COG2804 247 LARLLRLLNRPQGLILVTGPTGSGKTTTLY 276 (500)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCHHHHHH
Confidence 445567788889999999999999999997
No 71
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=89.14 E-value=58 Score=39.12 Aligned_cols=35 Identities=26% Similarity=0.447 Sum_probs=30.2
Q ss_pred hHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHhhcC
Q 002982 608 IIQEQLNQKICECEGLQETIGFLKQQLNDALELRN 642 (861)
Q Consensus 608 ilqeql~~k~~e~~elqe~v~~l~qql~~~~~~~~ 642 (861)
..++|...-++|..--.+.+..+++++..+++.++
T Consensus 120 ~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~ 154 (522)
T PF05701_consen 120 SAREQYASAVAELDSVKQELEKLRQELASALDAKN 154 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888899999999999999999999987763
No 72
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=89.10 E-value=66 Score=39.64 Aligned_cols=107 Identities=19% Similarity=0.222 Sum_probs=61.3
Q ss_pred hhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcCCCcccccccccCCccccc---ccccCCCCChHHHHHHHHHHHH
Q 002982 720 KGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKSSPTQRRTSAVRNGRRDGQ---IKRQNQDGSSLDLKRELALSRE 796 (861)
Q Consensus 720 k~lasaaavelk~l~eevtkl~~qn~~l~~el~~~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~~~~~~~~el~~~~~ 796 (861)
|--+--+--||+..-|....+.-||.-|.+.|.....+.. +-++-.++. ..|..+ .+-.++..+..
T Consensus 278 ~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~~~e------g~~~~~~~~~ee~~~~~~-----~ipEd~es~E~ 346 (617)
T PF15070_consen 278 KVQLEMAHQELQEAQEHLEALSQQNQQLQAQLSLMALPGE------GDGLESESEEEEAPQPMP-----SIPEDLESREA 346 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCC------CcccccccccccccCcCc-----ccccccccHHH
Confidence 3333344578889999999999999999999986553321 011111111 111111 11222222222
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhHH
Q 002982 797 REVSYEAALLEKDQQEAELQRKVEESKKREAYLENELANMW 837 (861)
Q Consensus 797 re~~le~~l~ek~~~e~el~~~~ee~k~~e~~lenelanmw 837 (861)
-.+.+..|+..-+.-.++|.+.+++-|.+-..|-..+|.-|
T Consensus 347 m~~f~~~a~~~~eeEr~~L~~qL~eqk~~~q~L~h~va~~q 387 (617)
T PF15070_consen 347 MVEFFNSALAQAEEERARLRRQLEEQKVQCQHLAHQVASAQ 387 (617)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 23445556655555567788888888877777776666555
No 73
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=88.71 E-value=0.28 Score=57.05 Aligned_cols=49 Identities=24% Similarity=0.398 Sum_probs=33.4
Q ss_pred eeEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 107 IAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 107 ~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
..|+||..+.. ..+...|..+ ..+... -..||. +|-||++|+||||.|.
T Consensus 100 ~~~tFdnFv~g-~~n~~a~~~~-~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 100 PDYTFENFVVG-PGNSFAYHAA-LEVAKN-PGRYNP-LFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CCCcccccccC-CchHHHHHHH-HHHHhC-cCCCCe-EEEEcCCCCcHHHHHH
Confidence 36999987753 4455666643 333332 223675 8999999999999996
No 74
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=88.57 E-value=0.26 Score=59.60 Aligned_cols=51 Identities=29% Similarity=0.461 Sum_probs=34.8
Q ss_pred eeEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCcccccc
Q 002982 107 IAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMHT 160 (861)
Q Consensus 107 ~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~g 160 (861)
..|+||..+.... +..+|. .+..++...-.+||. ||-||.+|+||||-+..
T Consensus 283 ~~~TFDnFvvG~s-N~~A~a-aa~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 283 PKYTFDTFVIGAS-NRFAHA-AAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCCHhhhcCCCc-cHHHHH-HHHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 3589987664433 444553 444555544456776 89999999999999873
No 75
>PRK05642 DNA replication initiation factor; Validated
Probab=88.51 E-value=0.33 Score=51.63 Aligned_cols=46 Identities=13% Similarity=0.333 Sum_probs=29.2
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHHHhhc---CC-CeeEEEecccCCCCcccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMD---GI-NGTIFAYGVTSSGKTHTMHT 160 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~---Gy-N~tIfAYGqTGSGKTyTM~g 160 (861)
.|+||..+... +..++ ..+....+ ++ ...++-||++|+||||-+..
T Consensus 15 ~~tfdnF~~~~--~~~a~-----~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a 64 (234)
T PRK05642 15 DATFANYYPGA--NAAAL-----GYVERLCEADAGWTESLIYLWGKDGVGRSHLLQA 64 (234)
T ss_pred cccccccCcCC--hHHHH-----HHHHHHhhccccCCCCeEEEECCCCCCHHHHHHH
Confidence 58999887432 22333 33333322 22 24688999999999999863
No 76
>PRK09087 hypothetical protein; Validated
Probab=88.40 E-value=0.26 Score=52.29 Aligned_cols=46 Identities=24% Similarity=0.268 Sum_probs=31.6
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.|+||..+....+ ..+|.. +.....-.+..++-||++||||||-+.
T Consensus 17 ~~~~~~Fi~~~~N-~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 17 AYGRDDLLVTESN-RAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCChhceeecCch-HHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHH
Confidence 5889988865444 346763 333222235568999999999999997
No 77
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=88.39 E-value=19 Score=44.80 Aligned_cols=117 Identities=21% Similarity=0.240 Sum_probs=67.0
Q ss_pred HHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHH----HHhhhhhhHHHHHHhhcCCCcccccc
Q 002982 689 EELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVA----KLMNHKERLTAELAAAKSSPTQRRTS 764 (861)
Q Consensus 689 e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevt----kl~~qn~~l~~el~~~~~~~~~~~~~ 764 (861)
+++.++..+..++|.+|+-..+|+-|+ +-||+=-|----+-..+..+|+ .|+.|-.-| .+.| ++
T Consensus 183 ~q~~tkl~e~~~en~~le~k~~k~~e~-~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~l----tp~r------k~- 250 (1265)
T KOG0976|consen 183 MEFQTKLAEANREKKALEEKLEKFKED-LIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTL----TPLR------KT- 250 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh----hhHh------hh-
Confidence 456777788888888888888888654 4556544444444444444444 444443332 1111 11
Q ss_pred cccCCcccccccccCCCCChHHHHHHHH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhH
Q 002982 765 AVRNGRRDGQIKRQNQDGSSLDLKRELA----LSREREVSYEAALLEKDQQEAELQRKVEESKKRE 826 (861)
Q Consensus 765 ~~~~~r~~~~~~~~~~~~~~~~~~~el~----~~~~re~~le~~l~ek~~~e~el~~~~ee~k~~e 826 (861)
-++=.+++.+.+-+-+|+- .-+-.-..|+.-|++|+-+=.|+++-+|+-||--
T Consensus 251 ---------~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~ 307 (1265)
T KOG0976|consen 251 ---------CSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTR 307 (1265)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 1111123333332222222 1222336788899999999999999999988854
No 78
>PRK06526 transposase; Provisional
Probab=88.12 E-value=0.27 Score=53.25 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=28.3
Q ss_pred eceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCcccccc
Q 002982 111 YDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMHT 160 (861)
Q Consensus 111 FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~g 160 (861)
||.-|.+.-++..+..-.....+. .+.| |+.||++|+||||.+..
T Consensus 73 fd~~~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 73 FDFDHQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred ccCccCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHH
Confidence 444455555555555544344443 3444 78899999999999863
No 79
>PRK12377 putative replication protein; Provisional
Probab=87.92 E-value=0.39 Score=51.96 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=36.2
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCcccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMHT 160 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~g 160 (861)
..+||........|..++. .+..++..+..+. ..|+-||++|+||||.+..
T Consensus 70 ~~tFdnf~~~~~~~~~a~~-~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 70 KCSFANYQVQNDGQRYALS-QAKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred cCCcCCcccCChhHHHHHH-HHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 3478766555556666776 4566777766654 4678899999999999863
No 80
>PRK08116 hypothetical protein; Validated
Probab=87.19 E-value=0.37 Score=52.48 Aligned_cols=51 Identities=16% Similarity=0.235 Sum_probs=35.4
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHHHhhc--CCCeeEEEecccCCCCcccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMD--GINGTIFAYGVTSSGKTHTMHT 160 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~--GyN~tIfAYGqTGSGKTyTM~g 160 (861)
.++||... .+..+..+|. .+...++.+.. +.|..++-||.+|+||||.+..
T Consensus 81 ~~tFdnf~-~~~~~~~a~~-~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~a 133 (268)
T PRK08116 81 NSTFENFL-FDKGSEKAYK-IARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAAC 133 (268)
T ss_pred hcchhccc-CChHHHHHHH-HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHH
Confidence 57888654 3455555665 45666666543 3455689999999999999864
No 81
>PRK08084 DNA replication initiation factor; Provisional
Probab=87.19 E-value=0.43 Score=50.70 Aligned_cols=46 Identities=13% Similarity=0.356 Sum_probs=30.3
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.|+||..+.. .+..++..+ ..++. ......++-||++|+||||.+.
T Consensus 18 ~~~fd~f~~~--~n~~a~~~l-~~~~~---~~~~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 18 DETFASFYPG--DNDSLLAAL-QNALR---QEHSGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred cCCccccccC--ccHHHHHHH-HHHHh---CCCCCeEEEECCCCCCHHHHHH
Confidence 5788866644 555566533 22222 2223478999999999999986
No 82
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=87.10 E-value=0.41 Score=55.58 Aligned_cols=50 Identities=28% Similarity=0.413 Sum_probs=31.9
Q ss_pred eeEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 107 IAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 107 ~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
..|+||..... ..+...|.. +..+...--..|| .+|-||++|+||||.+.
T Consensus 117 ~~~tfd~fv~g-~~n~~a~~~-~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~ 166 (450)
T PRK00149 117 PKYTFDNFVVG-KSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 166 (450)
T ss_pred CCCcccccccC-CCcHHHHHH-HHHHHhCcCccCC-eEEEECCCCCCHHHHHH
Confidence 35889875432 345556653 3444443223355 47889999999999986
No 83
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=86.94 E-value=0.42 Score=54.58 Aligned_cols=50 Identities=30% Similarity=0.438 Sum_probs=31.4
Q ss_pred eeEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 107 IAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 107 ~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
..|+||.... ...+...|. .+..+...--..|| .+|-||++|+||||.+.
T Consensus 105 ~~~tfd~fi~-g~~n~~a~~-~~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 105 PKYTFDNFVV-GKSNRLAHA-AALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 154 (405)
T ss_pred CCCccccccc-CCcHHHHHH-HHHHHHhCcCccCC-eEEEECCCCCcHHHHHH
Confidence 3689988543 344555665 33444443211244 47789999999999986
No 84
>PRK03918 chromosome segregation protein; Provisional
Probab=86.87 E-value=97 Score=39.06 Aligned_cols=14 Identities=21% Similarity=0.154 Sum_probs=6.1
Q ss_pred HHHHHHHhhhhhhh
Q 002982 523 LREQQKILAGEVAL 536 (861)
Q Consensus 523 lreq~k~l~geva~ 536 (861)
+++..+.+.+++.-
T Consensus 167 ~~~~~~~~~~~~~~ 180 (880)
T PRK03918 167 LGEVIKEIKRRIER 180 (880)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 85
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=86.80 E-value=57 Score=42.60 Aligned_cols=73 Identities=22% Similarity=0.341 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhH---HHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcC
Q 002982 684 QAAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLAS---AAAVELKALSEEVAKLMNHKERLTAELAAAKS 756 (861)
Q Consensus 684 q~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~las---aaavelk~l~eevtkl~~qn~~l~~el~~~~~ 756 (861)
..+++.+|+-++.++.|+.+.+.-.|++++.+-.|.-.|.. ++--.+.+=++++.||..+++-+...+-...+
T Consensus 506 ~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e 581 (1317)
T KOG0612|consen 506 EEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELE 581 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhh
Confidence 45667777777777777777777777777666555443322 22233445567777777777777776666554
No 86
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=86.35 E-value=0.62 Score=51.85 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=18.7
Q ss_pred cCCCeeEEEecccCCCCccccc
Q 002982 138 DGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 138 ~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.+....++-||++|+|||+++.
T Consensus 37 ~~~~~~i~I~G~~GtGKT~l~~ 58 (365)
T TIGR02928 37 GSRPSNVFIYGKTGTGKTAVTK 58 (365)
T ss_pred CCCCCcEEEECCCCCCHHHHHH
Confidence 3556789999999999999985
No 87
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=86.33 E-value=65 Score=42.14 Aligned_cols=76 Identities=24% Similarity=0.280 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcC
Q 002982 681 LQVQAAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKS 756 (861)
Q Consensus 681 ~~~q~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~~~~~ 756 (861)
+++...+...+-.....|.+.+..|.-.|.+|.-|+---++.-...--+.++|-+++.-|-..|..+..++.-+..
T Consensus 576 iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e 651 (1317)
T KOG0612|consen 576 IQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE 651 (1317)
T ss_pred HHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH
Confidence 3334445667777777788888888877777777776666777777778888889999999888888888887664
No 88
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=86.04 E-value=1.2e+02 Score=39.37 Aligned_cols=174 Identities=21% Similarity=0.309 Sum_probs=106.9
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhHHHHhHHHHhcCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccCcc
Q 002982 517 IDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNS 596 (861)
Q Consensus 517 ~d~~dllreq~k~l~geva~~~s~lkrl~e~a~~~p~~~~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~ 596 (861)
+.|...+-++.--|-++.| -+.+ ..+..|+.+++++|+.+++.+..|.+.|-.-...-..
T Consensus 254 ~~~~e~~~~~l~~Lk~k~~-----W~~V----------~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~----- 313 (1074)
T KOG0250|consen 254 LEQLEDLKENLEQLKAKMA-----WAWV----------NEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEE----- 313 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 4566667777777777777 5555 4567899999999999999999999998765443111
Q ss_pred cccccccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhhhhccccccccchhhhhhhhhhh
Q 002982 597 EVSQVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDIN 676 (861)
Q Consensus 597 ~~~~ik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (861)
+-| +---++.|++...-|-...-+++..+++-+..+....+ +
T Consensus 314 -~r~----k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~-------------------------------~-- 355 (1074)
T KOG0250|consen 314 -ARQ----KLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVN-------------------------------D-- 355 (1074)
T ss_pred -Hhh----hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-------------------------------H--
Confidence 111 01346778877776666666666666666544322100 0
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHhHhhhhhhhhh-chhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhc
Q 002982 677 EDSRLQVQAAEIEELNRKVTELTEAKEQLELRN-QKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAK 755 (861)
Q Consensus 677 ~~~~~~~q~~e~e~lk~~~~~l~e~k~~l~~~n-~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~~~~ 755 (861)
.+.....-...|.++|-++..|-..=.-++.+- +-+- ..-+-.+=+++.|..||.||..|+++|..|+-..+
T Consensus 356 ~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~-------~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~ 428 (1074)
T KOG0250|consen 356 LKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELG-------SELEERENKLEQLKKEVEKLEEQINSLREELNEVK 428 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000111224456666666655544333333222 1111 11223567899999999999999999988776555
No 89
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=85.60 E-value=0.7 Score=52.04 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=18.5
Q ss_pred cCCCeeEEEecccCCCCccccc
Q 002982 138 DGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 138 ~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.+....++-||++|+|||+++.
T Consensus 52 ~~~~~~~lI~G~~GtGKT~l~~ 73 (394)
T PRK00411 52 GSRPLNVLIYGPPGTGKTTTVK 73 (394)
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 4455678999999999999985
No 90
>PRK07952 DNA replication protein DnaC; Validated
Probab=85.60 E-value=0.62 Score=50.31 Aligned_cols=51 Identities=14% Similarity=0.155 Sum_probs=33.7
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCcccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMHT 160 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~g 160 (861)
.++||........|..++.. +...++.+..|+ ..++-||.+|+||||.+..
T Consensus 68 ~~tFdnf~~~~~~q~~al~~-a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSK-ARQYVEEFDGNI-ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred CCccccccCCCchHHHHHHH-HHHHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence 46777654444456666663 344555554443 3688899999999999863
No 91
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=85.52 E-value=1e+02 Score=38.14 Aligned_cols=112 Identities=33% Similarity=0.414 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcCCCc
Q 002982 680 RLQVQAAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKSSPT 759 (861)
Q Consensus 680 ~~~~q~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~~~~~~~~ 759 (861)
++..+..|++.+|+.+.+-+. .|-|+|.+--+-| -+|-+||-|+ |+.++=| +
T Consensus 637 kVn~L~~E~e~~kk~~eE~~~----------------~~~keie~K~~~e-~~L~~EveK~-----k~~a~EA-v----- 688 (786)
T PF05483_consen 637 KVNKLQEELENLKKKHEEETD----------------KYQKEIESKSISE-EELLGEVEKA-----KLTADEA-V----- 688 (786)
T ss_pred HHHHHHHHHHHHHhHHHHHHH----------------HHHHHHHHhhhhH-HHHHHHHHHH-----HHHHHHH-H-----
Confidence 444556677777666654432 5777777655555 5677777754 4443322 1
Q ss_pred ccccccccCCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhH------------HHHHHHHHHHHHHhhhhHH
Q 002982 760 QRRTSAVRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSYEAALLEK------------DQQEAELQRKVEESKKREA 827 (861)
Q Consensus 760 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~el~~~~~re~~le~~l~ek------------~~~e~el~~~~ee~k~~e~ 827 (861)
-+|+|...+||---|==-||||| |.-=.++.+|=.|+=-..+
T Consensus 689 --------------------------K~q~EtdlrCQhKIAeMVALMEKHK~qYDkiVEEkDaEL~~~k~KE~E~~s~k~ 742 (786)
T PF05483_consen 689 --------------------------KLQEETDLRCQHKIAEMVALMEKHKHQYDKIVEEKDAELGLYKKKEQEQSSHKA 742 (786)
T ss_pred --------------------------HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23777777777765555566665 3333445555556556678
Q ss_pred HHHhhhhhHHHHHHHhhh
Q 002982 828 YLENELANMWVLVAKLKK 845 (861)
Q Consensus 828 ~lenelanmwvlvaklkk 845 (861)
.||.||.|.-.=+.-||+
T Consensus 743 sLE~ELs~lk~el~slK~ 760 (786)
T PF05483_consen 743 SLELELSNLKNELSSLKK 760 (786)
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 999999998766665554
No 92
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=85.01 E-value=0.57 Score=54.76 Aligned_cols=50 Identities=22% Similarity=0.370 Sum_probs=32.7
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCcccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMHT 160 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~g 160 (861)
.|+||..+... +++..|. .+..++..--..|| .+|-||.+|+||||.|..
T Consensus 111 ~~tFdnFv~g~-~n~~A~~-aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A 160 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFI-AVQTVSKNPGISYN-PLFIYGESGMGKTHLLKA 160 (450)
T ss_pred ccchhcccCCC-cHHHHHH-HHHHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence 48999877544 4555664 44444432111245 478899999999999963
No 93
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=84.93 E-value=0.69 Score=47.73 Aligned_cols=46 Identities=13% Similarity=0.327 Sum_probs=31.0
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.|+||....+ .+..++..+- .++ ..+....|+-||++|+||||...
T Consensus 11 ~~~~~~~~~~--~~~~~~~~l~-~~~---~~~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 11 DPTFDNFYAG--GNAELLAALR-QLA---AGKGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred chhhcCcCcC--CcHHHHHHHH-HHH---hcCCCCeEEEECCCCCCHHHHHH
Confidence 4788877732 3444555332 222 25667789999999999999985
No 94
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=84.65 E-value=0.77 Score=42.23 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=19.8
Q ss_pred HHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 132 VVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
+...+.......++.+|++|+|||+.+.
T Consensus 10 i~~~~~~~~~~~v~i~G~~G~GKT~l~~ 37 (151)
T cd00009 10 LREALELPPPKNLLLYGPPGTGKTTLAR 37 (151)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHHH
Confidence 3333333345578889999999998875
No 95
>PRK08181 transposase; Validated
Probab=84.48 E-value=0.86 Score=49.89 Aligned_cols=46 Identities=26% Similarity=0.434 Sum_probs=27.7
Q ss_pred eeceecCCCCcchhHHHHHHH-HHHHHhhcCCCeeEEEecccCCCCcccccc
Q 002982 110 AYDRVFGPTTTTRHVYDIAAQ-HVVSGAMDGINGTIFAYGVTSSGKTHTMHT 160 (861)
Q Consensus 110 ~FD~VF~~~atQeeVY~~~~~-plV~~vl~GyN~tIfAYGqTGSGKTyTM~g 160 (861)
.||.-+.+..+...+..-... ..++ .|.| |+-||++|+||||-+..
T Consensus 79 ~fd~~~~~~~~~~~~~~L~~~~~~~~---~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 79 SFDFEAVPMVSKAQVMAIAAGDSWLA---KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred hCCccCCCCCCHHHHHHHHHHHHHHh---cCce--EEEEecCCCcHHHHHHH
Confidence 344445555554444442221 2332 4555 88899999999998863
No 96
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=84.45 E-value=1.2e+02 Score=38.01 Aligned_cols=60 Identities=20% Similarity=0.279 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcC
Q 002982 683 VQAAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKS 756 (861)
Q Consensus 683 ~q~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~~~~~ 756 (861)
..-.||.+|||.+.++--+|..|-..-+.+--..-.| -++++..+-...+|.+.|.+.+.
T Consensus 262 l~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a--------------~~als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 262 LNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHA--------------QGALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred cchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 3578999999999999999999987766554433333 34555555566667777777665
No 97
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=84.11 E-value=13 Score=44.58 Aligned_cols=103 Identities=26% Similarity=0.349 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhhHHhHhhhhhhhhhchhhhh----------------hhhhhhhhHH-------------HHHHHHhhHH
Q 002982 685 AAEIEELNRKVTELTEAKEQLELRNQKLSEE----------------SSYAKGLASA-------------AAVELKALSE 735 (861)
Q Consensus 685 ~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee----------------~~yak~lasa-------------aavelk~l~e 735 (861)
-.||-+|.-++.-.+|-=..||.+|.+|.-+ +-|=.||+.| +=+|++.|.+
T Consensus 41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~ 120 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLRE 120 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 5688888889999999999999999998654 2355556554 2356777777
Q ss_pred HHHHHhhhhhhHHHHHHhhcCCCcccccccccCCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 002982 736 EVAKLMNHKERLTAELAAAKSSPTQRRTSAVRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSYEAALL 806 (861)
Q Consensus 736 evtkl~~qn~~l~~el~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~el~~~~~re~~le~~l~ 806 (861)
||..|....++..+++..+++.. .++...+.++..|++--+-|=+.||.-+.
T Consensus 121 e~~elr~~~~~~~k~~~~~re~~-------------------~~~~~~l~~leAe~~~~krr~~~le~e~~ 172 (546)
T KOG0977|consen 121 ELKELRKKLEKAEKERRGAREKL-------------------DDYLSRLSELEAEINTLKRRIKALEDELK 172 (546)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHH-------------------HHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 77777777777777766655322 12333456667777777766666665543
No 98
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=84.04 E-value=0.74 Score=45.02 Aligned_cols=21 Identities=24% Similarity=0.173 Sum_probs=17.0
Q ss_pred CCeeEEEecccCCCCcccccc
Q 002982 140 INGTIFAYGVTSSGKTHTMHT 160 (861)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM~g 160 (861)
.+..++..++||||||++|..
T Consensus 24 ~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 24 EERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp GCSEEEEEESTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCcChhhhh
Confidence 356667788999999999973
No 99
>PRK04863 mukB cell division protein MukB; Provisional
Probab=84.01 E-value=1.8e+02 Score=39.61 Aligned_cols=66 Identities=20% Similarity=0.328 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhh---hHHHHHHHhhhcCCCC
Q 002982 785 LDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESKKREAYLENELA---NMWVLVAKLKKSHGAD 850 (861)
Q Consensus 785 ~~~~~el~~~~~re~~le~~l~ek~~~e~el~~~~ee~k~~e~~lenela---nmwvlvaklkk~~~~~ 850 (861)
++|-..|.+++.|-.+||..+.-.+.-=..|.++|+..+..-..++.++. +.|.-|=+|-+.+|..
T Consensus 1063 ~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~~W~~v~~~~~~~~~~ 1131 (1486)
T PRK04863 1063 DELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAGWCAVLRLVKDNGVE 1131 (1486)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 68899999999999999999999988889999999999988888887654 5799999998877643
No 100
>PRK08727 hypothetical protein; Validated
Probab=83.81 E-value=0.69 Score=49.10 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=27.1
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHHHhhcCC-CeeEEEecccCCCCccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGI-NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~Gy-N~tIfAYGqTGSGKTyTM~ 159 (861)
.|+||..+..... .+..+ .. +..|+ .-.|+-||++|+||||.+.
T Consensus 15 ~~~f~~f~~~~~n---~~~~~-~~----~~~~~~~~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 15 DQRFDSYIAAPDG---LLAQL-QA----LAAGQSSDWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred cCChhhccCCcHH---HHHHH-HH----HHhccCCCeEEEECCCCCCHHHHHH
Confidence 5788887644332 22211 11 12233 2359999999999999986
No 101
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=83.63 E-value=13 Score=44.05 Aligned_cols=119 Identities=18% Similarity=0.192 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhhHHhHhhhhhhhhhch----hhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcCCCcc
Q 002982 685 AAEIEELNRKVTELTEAKEQLELRNQK----LSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKSSPTQ 760 (861)
Q Consensus 685 ~~e~e~lk~~~~~l~e~k~~l~~~n~k----l~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~~~~~~~~~ 760 (861)
..||+-|.++.+.|.-|----+.+-|- +.-|-.|+--=|+..--||..+..|...++-+|.||-++|..++...-
T Consensus 172 ~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k- 250 (596)
T KOG4360|consen 172 EEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIK- 250 (596)
T ss_pred HHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-
Confidence 556666666666553222111111111 122445566666667778899999999999999999999998875331
Q ss_pred cccccccCCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 002982 761 RRTSAVRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEES 822 (861)
Q Consensus 761 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~el~~~~~re~~le~~l~ek~~~e~el~~~~ee~ 822 (861)
....-.++|..=|++.+++..-|+|-|.|-+-+++|+-.-+.|+
T Consensus 251 ------------------~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~Ea 294 (596)
T KOG4360|consen 251 ------------------YLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEA 294 (596)
T ss_pred ------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11124678888899999999999999999888888888777776
No 102
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=83.62 E-value=72 Score=41.02 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=32.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccCcccccccccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHH
Q 002982 561 IKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQVKAADNRIIQEQLNQKICECEGLQETIGFLKQQL 634 (861)
Q Consensus 561 ~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~ik~adnrilqeql~~k~~e~~elqe~v~~l~qql 634 (861)
..+...||+.+..+|-.||++....+.-+. +-|-+||+.+..++.-.+-.+...+.-|
T Consensus 267 ~~k~~~ei~~le~~ikei~~~rd~em~~~~----------------~~L~~~~~~~~~~~tr~~t~l~~~~~tl 324 (1174)
T KOG0933|consen 267 LGKTDKEIESLEKEIKEIEQQRDAEMGGEV----------------KALEDKLDSLQNEITREETSLNLKKETL 324 (1174)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhchhh----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666666666667776665555433 4566677766666655444444444333
No 103
>PRK06835 DNA replication protein DnaC; Validated
Probab=83.61 E-value=0.51 Score=53.05 Aligned_cols=36 Identities=17% Similarity=0.324 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHhhcCCCeeEEEecccCCCCcccccc
Q 002982 123 HVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMHT 160 (861)
Q Consensus 123 eVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~g 160 (861)
.++. .+...|+.+-.+. ..|+-||++|+||||.+..
T Consensus 167 ~~~~-~~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 167 KILE-KCKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHH-HHHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 3444 3455777766555 5689999999999998863
No 104
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=83.38 E-value=1.2e+02 Score=36.97 Aligned_cols=120 Identities=22% Similarity=0.303 Sum_probs=76.6
Q ss_pred hhhHHHHHHHHHHhhhhhhhh----hhHHHHhHHHHhcCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccc--
Q 002982 517 IDQIDLLREQQKILAGEVALH----SSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSH-- 590 (861)
Q Consensus 517 ~d~~dllreq~k~l~geva~~----~s~lkrl~e~a~~~p~~~~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~-- 590 (861)
.-++++||.=+.-=+|.|..- -.++.++.+++++.-- +.+.+|.+|.+|+++.+......++.....=+.-.
T Consensus 69 ~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra--~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~ 146 (546)
T KOG0977|consen 69 EHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERA--KLEIEITKLREELKELRKKLEKAEKERRGAREKLDDY 146 (546)
T ss_pred HHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 344555555444444444321 2467888999887764 44459999999999999988888776553322211
Q ss_pred -CccCcccccc-cccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHHHHHH
Q 002982 591 -NTMDNSEVSQ-VKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDAL 638 (861)
Q Consensus 591 -~~~~~~~~~~-ik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~~ 638 (861)
+.+..+++.. .--++.+.+-|.+.-=..||.-|.+.|..++.||.+..
T Consensus 147 ~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Et 196 (546)
T KOG0977|consen 147 LSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDET 196 (546)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 1112222222 23367788888888888888888888888888876643
No 105
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=83.03 E-value=1.1 Score=53.81 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=23.6
Q ss_pred HHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 132 VVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.+..++..-++.|+..|+||||||.||.
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~ 334 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLY 334 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 4556677778999999999999999985
No 106
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.99 E-value=41 Score=42.16 Aligned_cols=64 Identities=27% Similarity=0.362 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccCcccccccccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHH
Q 002982 555 EQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQVKAADNRIIQEQLNQKICECEGLQETIGFLKQQL 634 (861)
Q Consensus 555 ~~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~ik~adnrilqeql~~k~~e~~elqe~v~~l~qql 634 (861)
++.+..+.++++.|.+-.-||..|-|.- .+|+. -|--|++-++.++++...|-+.+..||-||
T Consensus 653 e~l~~~~~kyK~lI~~lD~~~e~lkQ~~-------------~~l~~----e~eeL~~~vq~~~s~hsql~~q~~~Lk~qL 715 (970)
T KOG0946|consen 653 EELDDIQQKYKGLIRELDYQIENLKQME-------------KELQV----ENEELEEEVQDFISEHSQLKDQLDLLKNQL 715 (970)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHH-------------HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677889999999999998887721 23333 267788888888888888888888888887
Q ss_pred H
Q 002982 635 N 635 (861)
Q Consensus 635 ~ 635 (861)
-
T Consensus 716 g 716 (970)
T KOG0946|consen 716 G 716 (970)
T ss_pred c
Confidence 4
No 107
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=82.91 E-value=45 Score=37.49 Aligned_cols=118 Identities=24% Similarity=0.262 Sum_probs=84.1
Q ss_pred ccchhhHHHHHHHHHHhhhhhhhhhhHHHHhHHHHhcCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccC--
Q 002982 514 IKTIDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHN-- 591 (861)
Q Consensus 514 ~~~~d~~dllreq~k~l~geva~~~s~lkrl~e~a~~~p~~~~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~-- 591 (861)
+.+.=|||+|.-.+--|-..+|--...+ ++-.+ +=+..+..+..|..|+.+.+.|+.-.+.-|.+-|.--..
T Consensus 108 ~~l~yqvd~Lkd~lee~eE~~~~~~re~----~eK~~--elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~~~ 181 (302)
T PF09738_consen 108 SALMYQVDLLKDKLEELEETLAQLQREY----REKIR--ELERQKRAHDSLREELDELREQLKQRDELIEKHGLVLVPDA 181 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCCCC
Confidence 4567899999988888877777544333 32222 235667788889999999999998888877654432221
Q ss_pred -ccC------------cccccc-----cccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHHHHH
Q 002982 592 -TMD------------NSEVSQ-----VKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDA 637 (861)
Q Consensus 592 -~~~------------~~~~~~-----ik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~ 637 (861)
|.+ ..-+++ +.+|-+--|-..|...+.|.++|++.|..|++||..-
T Consensus 182 ~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke~L~~qv~klk~qLee~ 245 (302)
T PF09738_consen 182 TNGDTSDEPNNVGHPKRALVSQEAAQLLESAGDGSLDVRLKKLADEKEELLEQVRKLKLQLEER 245 (302)
T ss_pred CCCccccCccccCCCcccccchhhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 112223 7888778888899999999999999999999999653
No 108
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=82.81 E-value=1 Score=46.95 Aligned_cols=48 Identities=13% Similarity=0.316 Sum_probs=30.7
Q ss_pred eeEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 107 IAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 107 ~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
..|+||.+++.. . ..++. .+..++.. .+.+..|+-||++|+||||.+.
T Consensus 13 ~~~~~d~f~~~~-~-~~~~~-~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 13 PPPTFDNFVAGE-N-AELVA-RLRELAAG--PVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred ChhhhcccccCC-c-HHHHH-HHHHHHhc--cCCCCeEEEECCCCCCHHHHHH
Confidence 358999988332 2 23333 33344331 2345678999999999999875
No 109
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=82.47 E-value=1.3 Score=55.67 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=18.5
Q ss_pred cCCCeeEEEecccCCCCccccc
Q 002982 138 DGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 138 ~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.|-+.+||-||+||+|||.|+.
T Consensus 778 sgpnnvLYIyG~PGTGKTATVK 799 (1164)
T PTZ00112 778 SGSNQILYISGMPGTGKTATVY 799 (1164)
T ss_pred CCCCceEEEECCCCCCHHHHHH
Confidence 3556678999999999999985
No 110
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=82.12 E-value=16 Score=35.82 Aligned_cols=64 Identities=31% Similarity=0.368 Sum_probs=52.6
Q ss_pred HhhHHHHHHHhhhhhhHHHHHHhhcCCCcccccccccCCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 002982 731 KALSEEVAKLMNHKERLTAELAAAKSSPTQRRTSAVRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSYEAALLEKDQ 810 (861)
Q Consensus 731 k~l~eevtkl~~qn~~l~~el~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~el~~~~~re~~le~~l~ek~~ 810 (861)
+.|++||.+||..|+.+.+... .+.+|+.++..-.+|..++=.+|-||.-
T Consensus 47 ~~l~~Eiv~l~~~~e~~~~~~~------------------------------~~~~L~~el~~l~~ry~t~LellGEK~E 96 (120)
T PF12325_consen 47 DELREEIVKLMEENEELRALKK------------------------------EVEELEQELEELQQRYQTLLELLGEKSE 96 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------------------------HHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 4567899999999998855433 4567899999988998777778999999
Q ss_pred HHHHHHHHHHHhhh
Q 002982 811 QEAELQRKVEESKK 824 (861)
Q Consensus 811 ~e~el~~~~ee~k~ 824 (861)
.-+||+-.|.+-|.
T Consensus 97 ~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 97 EVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888764
No 111
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=82.05 E-value=42 Score=41.05 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=19.6
Q ss_pred hHHHHHHhHHhhhhhHHHHHHHHHHHHHH
Q 002982 608 IIQEQLNQKICECEGLQETIGFLKQQLND 636 (861)
Q Consensus 608 ilqeql~~k~~e~~elqe~v~~l~qql~~ 636 (861)
-+++.......|+.+||+.|..|+.++..
T Consensus 318 ~~~~~~~~~~~el~~l~~~l~~l~~~i~~ 346 (594)
T PF05667_consen 318 TEEDEQEEQEQELEELQEQLDELESQIEE 346 (594)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455667888888888888777644
No 112
>PRK08939 primosomal protein DnaI; Reviewed
Probab=81.77 E-value=0.91 Score=50.54 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=33.0
Q ss_pred EeeceecCCCCcchhHHHHHHHHHHHHhhcC-CCeeEEEecccCCCCcccccc
Q 002982 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDG-INGTIFAYGVTSSGKTHTMHT 160 (861)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~~vl~G-yN~tIfAYGqTGSGKTyTM~g 160 (861)
.+||.+-.....+..++.. +...++....| ....|+-||++|+||||-+..
T Consensus 124 atf~~~~~~~~~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CcHHHhcCCChHHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 4555443333356667763 45666655543 234689999999999999864
No 113
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=81.08 E-value=0.98 Score=52.28 Aligned_cols=50 Identities=26% Similarity=0.457 Sum_probs=31.5
Q ss_pred eeEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 107 IAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 107 ~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
..|+||...... ++.-.|.. ...|...-.+.--.||-||.+|+||||-|.
T Consensus 82 ~~ytFdnFv~g~-~N~~A~aa--~~~va~~~g~~~nplfi~G~~GlGKTHLl~ 131 (408)
T COG0593 82 PKYTFDNFVVGP-SNRLAYAA--AKAVAENPGGAYNPLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCCchhheeeCC-chHHHHHH--HHHHHhccCCcCCcEEEECCCCCCHHHHHH
Confidence 469999766443 34444432 222333333334568899999999999997
No 114
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=80.94 E-value=1.6 Score=51.56 Aligned_cols=28 Identities=32% Similarity=0.372 Sum_probs=23.3
Q ss_pred HHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 132 VVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.+..++..-++.|+..|+||||||.||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4455667777889999999999999995
No 115
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=79.89 E-value=1.5e+02 Score=36.01 Aligned_cols=18 Identities=11% Similarity=-0.114 Sum_probs=12.8
Q ss_pred cchhhhccCCCCCCCCCC
Q 002982 488 DLLSDARHDRGVPEDSFL 505 (861)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~ 505 (861)
=.|++..++|.+...|.+
T Consensus 90 YqfcYv~~~g~V~G~S~p 107 (546)
T PF07888_consen 90 YQFCYVDQKGEVRGASTP 107 (546)
T ss_pred EEEEEECCCccEEEecCC
Confidence 357888888887777743
No 116
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=79.88 E-value=5.6 Score=43.02 Aligned_cols=53 Identities=25% Similarity=0.231 Sum_probs=33.8
Q ss_pred EecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeeeeeeeeecCCCCC
Q 002982 208 VVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGSES 277 (861)
Q Consensus 208 ~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~SkL~LVDLAGSEr 277 (861)
.+.+++++...+...... ..+. + ..-|.-++.|.|..... -.|.||||+|-..
T Consensus 85 ~~~~~~~v~~~i~~~~~~-~~~~---~--~~~s~~~i~l~i~~p~~-----------~~ltLIDlPGl~~ 137 (240)
T smart00053 85 KFTDFDEVRNEIEAETDR-VTGT---N--KGISPVPINLRVYSPHV-----------LNLTLIDLPGITK 137 (240)
T ss_pred ccCCHHHHHHHHHHHHHH-hcCC---C--CcccCcceEEEEeCCCC-----------CceEEEeCCCccc
Confidence 446788888888765432 2111 1 23456688888874321 3589999999863
No 117
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=79.84 E-value=0.78 Score=41.72 Aligned_cols=16 Identities=31% Similarity=0.291 Sum_probs=14.3
Q ss_pred EEEecccCCCCccccc
Q 002982 144 IFAYGVTSSGKTHTMH 159 (861)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (861)
++.+|+||+|||+++.
T Consensus 3 ~~i~~~~G~GKT~~~~ 18 (144)
T cd00046 3 VLLAAPTGSGKTLAAL 18 (144)
T ss_pred EEEECCCCCchhHHHH
Confidence 5679999999999986
No 118
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=79.73 E-value=43 Score=36.52 Aligned_cols=54 Identities=30% Similarity=0.345 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhHH
Q 002982 784 SLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESKKREAYLENELANMW 837 (861)
Q Consensus 784 ~~~~~~el~~~~~re~~le~~l~ek~~~e~el~~~~ee~k~~e~~lenelanmw 837 (861)
..+|..|+..-++|.++||.-|.+-.-+.++|++.+++.+-+=..+|++|+---
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~ 144 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE 144 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999888888876543
No 119
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=79.66 E-value=6.4 Score=35.15 Aligned_cols=32 Identities=41% Similarity=0.524 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhHHhHhhhhhhhhhchhhhhh
Q 002982 685 AAEIEELNRKVTELTEAKEQLELRNQKLSEES 716 (861)
Q Consensus 685 ~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~ 716 (861)
.-||++||.+...|.+++..|...|++|-+|-
T Consensus 24 q~e~eeLke~n~~L~~e~~~L~~en~~L~~e~ 55 (72)
T PF06005_consen 24 QMENEELKEKNNELKEENEELKEENEQLKQER 55 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 56888888888888888888888888888664
No 120
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=79.62 E-value=1.3e+02 Score=39.03 Aligned_cols=125 Identities=26% Similarity=0.296 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHH--HhhhhhhHHHHHHhhcCCCcccc
Q 002982 685 AAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAK--LMNHKERLTAELAAAKSSPTQRR 762 (861)
Q Consensus 685 ~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtk--l~~qn~~l~~el~~~~~~~~~~~ 762 (861)
++.-+.|+++..+|.+.++.|-.+--|+- .++-.+..-|++.| |-.-|. ...++.....+.. ..
T Consensus 779 ~~~~~~l~~e~~~l~~l~~el~~r~dk~~------------s~e~~~~HyE~~~K~~l~~l~~-~E~~~~~~e~~~~-e~ 844 (1074)
T KOG0250|consen 779 AAGREKLQGEISKLDALKEELKLREDKLR------------SAEDEKRHYEDKLKSRLEELKQ-KEVEKVNLEEPRA-EE 844 (1074)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHh------------hhhhhhhhHHHHHHHhhHHHHH-HHHHHHhhhcchh-hh
Confidence 44555666666666666666666655553 23445566677777 322221 2233333222110 00
Q ss_pred cccccC-CcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh
Q 002982 763 TSAVRN-GRRDGQIKRQNQDGSSLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESKK 824 (861)
Q Consensus 763 ~~~~~~-~r~~~~~~~~~~~~~~~~~~~el~~~~~re~~le~~l~ek~~~e~el~~~~ee~k~ 824 (861)
....+- -...+ ..=-+-+..+.++++|+.-=+.-=..+|..+-+-.-..+++...-.+.|+
T Consensus 845 ~~ka~~~cp~~~-~ei~~~~~~~~eik~ei~rlk~~i~~~ee~~~~~~e~~~~~~~~~~~~~k 906 (1074)
T KOG0250|consen 845 DQKARTECPEEG-IEIEALGKTVAEIKREIKRLKRQIQMCEESLGELEELHRGLHEARKELKK 906 (1074)
T ss_pred CchhhhhCcccc-chhhcccchHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhhhh
Confidence 000000 00000 00001111468899998755554477777776666666665554444433
No 121
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=78.77 E-value=42 Score=36.23 Aligned_cols=68 Identities=24% Similarity=0.315 Sum_probs=39.3
Q ss_pred HHHHHHHhhHHhHhhhhhhhhhchhhh-hhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhc
Q 002982 688 IEELNRKVTELTEAKEQLELRNQKLSE-ESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAK 755 (861)
Q Consensus 688 ~e~lk~~~~~l~e~k~~l~~~n~kl~e-e~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~~~~ 755 (861)
+-+++.+..++.++++.|..+-..+.+ +..+...-......|+..+.+.+.+|....+++..++...|
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r 90 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKR 90 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777777776666655 22222333333445555556666666666666666655544
No 122
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=78.70 E-value=1.7 Score=49.78 Aligned_cols=51 Identities=18% Similarity=0.267 Sum_probs=31.4
Q ss_pred EeeceecCCCCcchhHHHHHHHHHHH-HhhcC----CCeeEEEecccCCCCccccc
Q 002982 109 YAYDRVFGPTTTTRHVYDIAAQHVVS-GAMDG----INGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~-~vl~G----yN~tIfAYGqTGSGKTyTM~ 159 (861)
+.||.|.+-+..-+++.+.+..|+.. ..+.. ....|+-||++|+|||+...
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAk 183 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAK 183 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHH
Confidence 55565555544445555555555554 22321 23458889999999999874
No 123
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=78.47 E-value=3 Score=40.18 Aligned_cols=35 Identities=37% Similarity=0.526 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhhHHhHhhhhhhhhhchhhhh
Q 002982 681 LQVQAAEIEELNRKVTELTEAKEQLELRNQKLSEE 715 (861)
Q Consensus 681 ~~~q~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee 715 (861)
+..--.+++.||+.+.+|.|||..|++.|++|-+-
T Consensus 17 l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~ 51 (110)
T PRK13169 17 LGVLLKELGALKKQLAELLEENTALRLENDKLRER 51 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446799999999999999999999999998764
No 124
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=78.42 E-value=1.7 Score=49.60 Aligned_cols=22 Identities=36% Similarity=0.521 Sum_probs=17.7
Q ss_pred cCCCeeEEEecccCCCCccccc
Q 002982 138 DGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 138 ~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.|-...++.||.||+|||.|+.
T Consensus 39 ~~~p~n~~iyG~~GTGKT~~~~ 60 (366)
T COG1474 39 GERPSNIIIYGPTGTGKTATVK 60 (366)
T ss_pred CCCCccEEEECCCCCCHhHHHH
Confidence 3444449999999999999985
No 125
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=77.86 E-value=1.3e+02 Score=36.59 Aligned_cols=138 Identities=20% Similarity=0.225 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcCCCcccccc
Q 002982 685 AAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKSSPTQRRTS 764 (861)
Q Consensus 685 ~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~~~~~~~~~~~~~ 764 (861)
..++++....+..+.+.-+.|...-.|-..--.|+ --.++.+..-+..+..+|..|..|+...+.+=.
T Consensus 274 ~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~v-------ek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~----- 341 (569)
T PRK04778 274 ELDLDEAEEKNEEIQERIDQLYDILEREVKARKYV-------EKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYT----- 341 (569)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccc-----
Confidence 34455555555555555555554443322222222 223567788888888899999999988774310
Q ss_pred cccCCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHhh
Q 002982 765 AVRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESKKREAYLENELANMWVLVAKLK 844 (861)
Q Consensus 765 ~~~~~r~~~~~~~~~~~~~~~~~~~el~~~~~re~~le~~l~ek~~~e~el~~~~ee~k~~e~~lenelanmwvlvaklk 844 (861)
--++....+..+..+|..-..+=..++..+.++...=.+++..+++...+-..++++...||-.+..|+
T Consensus 342 -----------l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lr 410 (569)
T PRK04778 342 -----------LNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLR 410 (569)
T ss_pred -----------cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000111123445555555555555555555555555555666666666666666666666666655555
Q ss_pred h
Q 002982 845 K 845 (861)
Q Consensus 845 k 845 (861)
+
T Consensus 411 k 411 (569)
T PRK04778 411 K 411 (569)
T ss_pred H
Confidence 4
No 126
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=77.81 E-value=3e+02 Score=38.15 Aligned_cols=288 Identities=23% Similarity=0.239 Sum_probs=164.4
Q ss_pred HHHHHHHHHHhhhhhh-h--hhhHHHHhHHHHh-cCCCh-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccC
Q 002982 520 IDLLREQQKILAGEVA-L--HSSALKRLSEEAA-RNPQK-EQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMD 594 (861)
Q Consensus 520 ~dllreq~k~l~geva-~--~~s~lkrl~e~a~-~~p~~-~~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~ 594 (861)
.||+.++.-=+.-+++ + .-..+++|.++|. .+|++ .++..-...+..++.....-+..||.-|.+.-..-.+...
T Consensus 286 ~eL~ks~~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~~~~ 365 (1822)
T KOG4674|consen 286 NELWKSKLEELSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSLSATGE 365 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcc
Confidence 4677777777766665 2 2245777777775 57777 3444444455556666668899999888765433222212
Q ss_pred cccccccc--cchhhhHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhhhhccccccccchhhhhhh
Q 002982 595 NSEVSQVK--AADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALL 672 (861)
Q Consensus 595 ~~~~~~ik--~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (861)
...|+++. ++|++.+.=||-.--+....+|.++.+++.++-++--- +++ .-
T Consensus 366 ~~~~s~~~a~~s~~~~~~~sLtk~ys~~~~~qqqle~~~lele~~~~~--l~s-------------------------~~ 418 (1822)
T KOG4674|consen 366 SSMVSEKAALASSLIRPGSSLTKLYSKYSKLQQQLESLKLELERLQNI--LSS-------------------------FK 418 (1822)
T ss_pred cchhhhHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-------------------------HH
Confidence 22233322 57999999999888889999999999998887664210 000 00
Q ss_pred hhhhhh-HHHHHHHHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHH
Q 002982 673 KDINED-SRLQVQAAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAEL 751 (861)
Q Consensus 673 ~~~~~~-~~~~~q~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el 751 (861)
+++..- ..++.|..+++...-.++.+.++-+.+-..-+++-.+---++-.-..-.-|+|.|.-.++.|+-|=-=|=.||
T Consensus 419 eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv~~Ll~el 498 (1822)
T KOG4674|consen 419 EEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELESLKKQLNDLERENKLLEQQISDLSRQVNVLLLEL 498 (1822)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111 2355677888888888887777655554444454444433444444444555555555555555444444455
Q ss_pred HhhcCCCcccccccccCCcccccc------------cccCCCCChHHHHH---H-HHHHHHHHHHHHHHHhh-HHHHHHH
Q 002982 752 AAAKSSPTQRRTSAVRNGRRDGQI------------KRQNQDGSSLDLKR---E-LALSREREVSYEAALLE-KDQQEAE 814 (861)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~r~~~~~------------~~~~~~~~~~~~~~---e-l~~~~~re~~le~~l~e-k~~~e~e 814 (861)
..++.-- +..+++.. .|.-.|.++.+|.- | |++-+.=..-+|+.-.+ +......
T Consensus 499 ~e~~~~~---------~~~~~s~~~~~es~S~~iIse~Lv~F~nI~eLqekN~eLL~~vR~Lae~lE~~E~~~~~~~~~~ 569 (1822)
T KOG4674|consen 499 DELRKGS---------KITVSSDSTENESDSEEIISERLVEFSNINELQEKNVELLNAVRELAEKLEAAEKTQDKTLQNI 569 (1822)
T ss_pred HHHHhhh---------hcccCccccccCccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 5554211 22222221 12222223333331 1 11111111234444333 5567788
Q ss_pred HHHHHHHhhhhHHHHHhhhhhHHHHHHHh
Q 002982 815 LQRKVEESKKREAYLENELANMWVLVAKL 843 (861)
Q Consensus 815 l~~~~ee~k~~e~~lenelanmwvlvakl 843 (861)
++-++.+++-+=+-|+++|.-|=-.|--|
T Consensus 570 ~k~~~~~a~e~i~~L~~~l~e~~~~i~sL 598 (1822)
T KOG4674|consen 570 LKETINEASEKIAELEKELEEQEQRIESL 598 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999998877665443
No 127
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=76.93 E-value=0.87 Score=42.62 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=14.1
Q ss_pred CeeEEEecccCCCCccccc
Q 002982 141 NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (861)
..+++.||++|+|||.++.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEEE-TTSSHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHH
Confidence 3678999999999999986
No 128
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=76.91 E-value=1.6e+02 Score=34.68 Aligned_cols=30 Identities=17% Similarity=0.415 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhHHhHhhhhhhhhhchhh
Q 002982 684 QAAEIEELNRKVTELTEAKEQLELRNQKLS 713 (861)
Q Consensus 684 q~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ 713 (861)
-...|+.|++....|...+..++.+-.+|.
T Consensus 159 ~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~ 188 (420)
T COG4942 159 RAERIDALKATLKQLAAVRAEIAAEQAELT 188 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999999888888777666553
No 129
>PRK06921 hypothetical protein; Provisional
Probab=76.71 E-value=1.8 Score=47.17 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhhc---CCCeeEEEecccCCCCcccccc
Q 002982 124 VYDIAAQHVVSGAMD---GINGTIFAYGVTSSGKTHTMHT 160 (861)
Q Consensus 124 VY~~~~~plV~~vl~---GyN~tIfAYGqTGSGKTyTM~g 160 (861)
+|. .+...++.+-. +....|+-||++|+||||.+..
T Consensus 98 ~~~-~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 98 AYE-CAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred HHH-HHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 443 34455555432 2345688899999999999863
No 130
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=76.56 E-value=3.3 Score=46.78 Aligned_cols=91 Identities=18% Similarity=0.283 Sum_probs=46.2
Q ss_pred eEEEEecCCCChh-hhccCCeEEEecCCCEEEeC--CCC----------CceeEeeceecCCCCcchhHHHHHHHHHHHH
Q 002982 69 VTVTVRFRPLSPR-EIRQGEEIAWYADGETILRN--EDN----------PSIAYAYDRVFGPTTTTRHVYDIAAQHVVSG 135 (861)
Q Consensus 69 VkV~VRVRPl~~~-E~~~g~~~~~~~d~~~iv~~--~~~----------~~~~F~FD~VF~~~atQeeVY~~~~~plV~~ 135 (861)
-++++-+.++... .+..|..+.+......++.. ... ..-.+.||.+.+-+..-+.+.+.+..|+...
T Consensus 66 ~~~~~~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~ 145 (364)
T TIGR01242 66 PNFVVNVSAFIDRKSLKPGARVALNQQTLTIVDVLPTSKDPLVKGMEVEERPNVSYEDIGGLEEQIREIREAVELPLKHP 145 (364)
T ss_pred CEEEEeccccCCHhHCCCCCEEEEcCCcceEEeecccccccccccceeccCCCCCHHHhCChHHHHHHHHHHHHHHhcCH
Confidence 3566666665433 34455555544333322211 000 1113455555554444444555444444331
Q ss_pred -hhc--CC--CeeEEEecccCCCCccccc
Q 002982 136 -AMD--GI--NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 136 -vl~--Gy--N~tIfAYGqTGSGKTyTM~ 159 (861)
.+. |. ...|+-||++|+|||++..
T Consensus 146 ~~~~~~g~~~p~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 146 ELFEEVGIEPPKGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred HHHHhcCCCCCceEEEECCCCCCHHHHHH
Confidence 121 21 3458889999999999885
No 131
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=76.49 E-value=1.1 Score=40.61 Aligned_cols=18 Identities=33% Similarity=0.397 Sum_probs=15.8
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..++-+|++|+|||+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 3 EVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 467889999999999986
No 132
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=76.34 E-value=3.7 Score=39.30 Aligned_cols=34 Identities=35% Similarity=0.554 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhhHHhHhhhhhhhhhchhhh
Q 002982 681 LQVQAAEIEELNRKVTELTEAKEQLELRNQKLSE 714 (861)
Q Consensus 681 ~~~q~~e~e~lk~~~~~l~e~k~~l~~~n~kl~e 714 (861)
+..--.+|+.||..+.+|.|||..|.+.|++|-+
T Consensus 17 l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~ 50 (107)
T PF06156_consen 17 LGQLLEELEELKKQLQELLEENARLRIENEHLRE 50 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344679999999999999999999999999865
No 133
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=76.04 E-value=2.1e+02 Score=35.82 Aligned_cols=135 Identities=24% Similarity=0.331 Sum_probs=89.4
Q ss_pred HHHhhHHhHhhhhhhhhhchhhh-hhhhhhhhhHHHHHHHHh--hHHHHHHHhhhhhhHHHHHHhhcCCCcccccccccC
Q 002982 692 NRKVTELTEAKEQLELRNQKLSE-ESSYAKGLASAAAVELKA--LSEEVAKLMNHKERLTAELAAAKSSPTQRRTSAVRN 768 (861)
Q Consensus 692 k~~~~~l~e~k~~l~~~n~kl~e-e~~yak~lasaaavelk~--l~eevtkl~~qn~~l~~el~~~~~~~~~~~~~~~~~ 768 (861)
=|+..+|.|++-+--.+--+|.| ||.-|..++++.+-|.+. .-|=.-||-.||+++++||.-++..- +.+
T Consensus 117 lqerLelaE~~l~qs~rae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqre---emn---- 189 (916)
T KOG0249|consen 117 LQERLELAEPKLQQSLRAETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQRE---KMN---- 189 (916)
T ss_pred hhHHHHHhhHhhHhHHhhhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhh----
Confidence 35566666766666666666654 788888888888888874 34556799999999999999887211 111
Q ss_pred Cccccccccc-CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHhhhhHHHHHhhhhhHHHHHHHhh
Q 002982 769 GRRDGQIKRQ-NQDGSSLDLKRELALSREREVSYEAALLEKDQQE---AELQRKVEESKKREAYLENELANMWVLVAKLK 844 (861)
Q Consensus 769 ~r~~~~~~~~-~~~~~~~~~~~el~~~~~re~~le~~l~ek~~~e---~el~~~~ee~k~~e~~lenelanmwvlvaklk 844 (861)
+-|.+|. +... -++-.+.++|-+|||.+ +.++ +-+++++++..+-+..|-++....--+|+.|+
T Consensus 190 ---eeh~~rlsdtvd-----ErlqlhlkermaAle~k----n~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 190 ---EEHNKRLSDTVD-----ERLQLHLKERMAALEDK----NRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred ---hhhccccccccH-----HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1111111 1111 44555677777776653 4444 44578888888888888888888888888887
Q ss_pred h
Q 002982 845 K 845 (861)
Q Consensus 845 k 845 (861)
.
T Consensus 258 ~ 258 (916)
T KOG0249|consen 258 R 258 (916)
T ss_pred H
Confidence 4
No 134
>PF13245 AAA_19: Part of AAA domain
Probab=76.03 E-value=1.5 Score=39.02 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=17.6
Q ss_pred HHHhhcCCCeeEEEecccCCCCccccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
|..++. -+..++..|+.|||||+|+.
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHH
Confidence 344455 23334458999999999985
No 135
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=76.03 E-value=59 Score=39.87 Aligned_cols=39 Identities=15% Similarity=0.142 Sum_probs=21.6
Q ss_pred hhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHH
Q 002982 712 LSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAE 750 (861)
Q Consensus 712 l~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~e 750 (861)
+.+|---.++-.-++..|++.-.+...+|..+.+++.++
T Consensus 445 ~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~ 483 (594)
T PF05667_consen 445 KLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD 483 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 334443444444455566666666666666666666443
No 136
>PRK10436 hypothetical protein; Provisional
Probab=75.90 E-value=1.5 Score=51.52 Aligned_cols=28 Identities=36% Similarity=0.399 Sum_probs=23.2
Q ss_pred HHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 132 VVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.+..++..-++.|+..|+||||||.||.
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 3445666778999999999999999996
No 137
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=75.49 E-value=1.4e+02 Score=33.84 Aligned_cols=31 Identities=32% Similarity=0.276 Sum_probs=28.3
Q ss_pred hhHHHHHHhHHhhhhhHHHHHHHHHHHHHHH
Q 002982 607 RIIQEQLNQKICECEGLQETIGFLKQQLNDA 637 (861)
Q Consensus 607 rilqeql~~k~~e~~elqe~v~~l~qql~~~ 637 (861)
..|++-|-.|.-||...||.|.+|.-|+.++
T Consensus 216 a~LseELa~k~Ee~~rQQEEIt~Llsqivdl 246 (306)
T PF04849_consen 216 ASLSEELARKTEENRRQQEEITSLLSQIVDL 246 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999998774
No 138
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=75.48 E-value=2.1 Score=50.20 Aligned_cols=51 Identities=22% Similarity=0.288 Sum_probs=32.8
Q ss_pred eeEeeceecCCCCcchhHHHHHHHHHHHHh--hcC--CCeeEEEecccCCCCcccccc
Q 002982 107 IAYAYDRVFGPTTTTRHVYDIAAQHVVSGA--MDG--INGTIFAYGVTSSGKTHTMHT 160 (861)
Q Consensus 107 ~~F~FD~VF~~~atQeeVY~~~~~plV~~v--l~G--yN~tIfAYGqTGSGKTyTM~g 160 (861)
..|+||..+... .+...|. .+..+.... ..| ||. +|-||++|+||||.+..
T Consensus 106 ~~~tFdnFv~g~-~N~~a~~-~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~A 160 (445)
T PRK12422 106 PLMTFANFLVTP-ENDLPHR-ILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQA 160 (445)
T ss_pred ccccccceeeCC-cHHHHHH-HHHHHHhccccccCCCCce-EEEEcCCCCCHHHHHHH
Confidence 469999877543 4555554 344444332 223 454 67799999999999863
No 139
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=74.99 E-value=1.6 Score=42.37 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=19.3
Q ss_pred HHHhhcCCCeeEEEecccCCCCccccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
+..+..|.| ++..|+||+|||+...
T Consensus 8 ~~~i~~~~~--~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 8 IEAIISGKN--VLISAPTGSGKTLAYI 32 (169)
T ss_dssp HHHHHTTSE--EEEECSTTSSHHHHHH
T ss_pred HHHHHcCCC--EEEECCCCCccHHHHH
Confidence 344556666 7789999999999875
No 140
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=74.89 E-value=1.9 Score=49.74 Aligned_cols=52 Identities=15% Similarity=0.277 Sum_probs=35.7
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHH-Hhhc--C--CCeeEEEecccCCCCccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVS-GAMD--G--INGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~-~vl~--G--yN~tIfAYGqTGSGKTyTM~ 159 (861)
.++|+.|-+.+..-+++.+.+..|+.. .++. | ....|+-||++|+|||+...
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAk 197 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAK 197 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHH
Confidence 467777777666556666666666653 3343 2 34568889999999999875
No 141
>PF13514 AAA_27: AAA domain
Probab=74.85 E-value=2.6e+02 Score=36.80 Aligned_cols=31 Identities=32% Similarity=0.379 Sum_probs=20.7
Q ss_pred HHHHHHHhhHHHHHHHhhhhhhHHHHHHhhc
Q 002982 725 AAAVELKALSEEVAKLMNHKERLTAELAAAK 755 (861)
Q Consensus 725 aaavelk~l~eevtkl~~qn~~l~~el~~~~ 755 (861)
....+|..|..++..|..+...|..++..++
T Consensus 893 ~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~ 923 (1111)
T PF13514_consen 893 ELEAELEELEEELEELEEELEELQEERAELE 923 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777777776666555
No 142
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=74.72 E-value=1.2 Score=47.93 Aligned_cols=19 Identities=42% Similarity=0.620 Sum_probs=16.3
Q ss_pred CeeEEEecccCCCCccccc
Q 002982 141 NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (861)
.+.|+..|.||||||.+|.
T Consensus 127 ~~~ili~G~tGSGKTT~l~ 145 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLN 145 (270)
T ss_dssp TEEEEEEESTTSSHHHHHH
T ss_pred ceEEEEECCCccccchHHH
Confidence 4667778999999999995
No 143
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=74.65 E-value=3.7e+02 Score=37.68 Aligned_cols=159 Identities=20% Similarity=0.202 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcCCCcccccc
Q 002982 685 AAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKSSPTQRRTS 764 (861)
Q Consensus 685 ~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~~~~~~~~~~~~~ 764 (861)
+.|-..+..++..|.++-.+|+-++.||..|..-=-+----..-.|-..-+++..|...++||...|.-....-.+.+.
T Consensus 956 ~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~- 1034 (1930)
T KOG0161|consen 956 ELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKR- 1034 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4455555566666666666666666666655433111111112223344556666666777777766644422111000
Q ss_pred cccCCcccccccccC--------CCCChHHHHHHHHHHHH-HHH---HHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHhh
Q 002982 765 AVRNGRRDGQIKRQN--------QDGSSLDLKRELALSRE-REV---SYEAALLEKDQQEAELQRKVEESKKREAYLENE 832 (861)
Q Consensus 765 ~~~~~r~~~~~~~~~--------~~~~~~~~~~el~~~~~-re~---~le~~l~ek~~~e~el~~~~ee~k~~e~~lene 832 (861)
...-.+...+..+ +.......+.||....- +|. .+.+=+-+....=+.++++|.|--.+=..|+-|
T Consensus 1035 --~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~ 1112 (1930)
T KOG0161|consen 1035 --IRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEE 1112 (1930)
T ss_pred --HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000010011100 00001122222222111 112 223333333444455667777777777777777
Q ss_pred hhhHHHHHHHhhhc
Q 002982 833 LANMWVLVAKLKKS 846 (861)
Q Consensus 833 lanmwvlvaklkk~ 846 (861)
|.-==...+|++|.
T Consensus 1113 le~er~~r~K~ek~ 1126 (1930)
T KOG0161|consen 1113 LEAERASRAKAERQ 1126 (1930)
T ss_pred HHHHHHHHHHHHHH
Confidence 77666666776654
No 144
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=74.63 E-value=35 Score=40.09 Aligned_cols=124 Identities=19% Similarity=0.277 Sum_probs=17.4
Q ss_pred ccccchhhHHHHHHHHHHhhhhhhhhhhHH-HHhHHH---Hhc-------CCC--------------hHHHHHHHHHHHH
Q 002982 512 TSIKTIDQIDLLREQQKILAGEVALHSSAL-KRLSEE---AAR-------NPQ--------------KEQLQVEIKKLRD 566 (861)
Q Consensus 512 ~~~~~~d~~dllreq~k~l~geva~~~s~l-krl~e~---a~~-------~p~--------------~~~~~~~~~~l~~ 566 (861)
+...+.+.|--|.++++-|..++.=+...+ .|+++- ++. .|. +.....+++.|+.
T Consensus 79 vk~h~d~~~~~l~~~i~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Ev~~LRr 158 (424)
T PF03915_consen 79 VKKHIDSGIGGLSEEIEELKQELDEQQETILQRVKERQQSAAKPVARPAAAPPPSSAPSSSSSPQSTSKSDLKEVQSLRR 158 (424)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCcccccccCcCCCCcchHHHHHHHHH
Confidence 344555667777777777777777777776 676665 111 111 0002335666666
Q ss_pred HHHhHHHHHHHHHHHHHhhhhcccCccCcccccccccc--hhhhHHHHHHhH--------HhhhhhHHHHHHHHHHHHH
Q 002982 567 EIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQVKAA--DNRIIQEQLNQK--------ICECEGLQETIGFLKQQLN 635 (861)
Q Consensus 567 ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~ik~a--dnrilqeql~~k--------~~e~~elqe~v~~l~qql~ 635 (861)
||.-.++=-...-..+.++|.+-...+..+--..+..+ =||..=+.=+.| .....+||..|-.|+.-..
T Consensus 159 eLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~ 237 (424)
T PF03915_consen 159 ELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVV 237 (424)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655555555555555555554433322211112222 455544433333 4556677777777776643
No 145
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=73.86 E-value=1.1e+02 Score=32.98 Aligned_cols=31 Identities=16% Similarity=0.346 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhhccc
Q 002982 560 EIKKLRDEIKGKNDQIALLEKQIADSIMTSH 590 (861)
Q Consensus 560 ~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~ 590 (861)
.+-++..+|...+..-..|.++|.+.++...
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~ 51 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEEILESDS 51 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3556677777777777777777777766433
No 146
>PF12846 AAA_10: AAA-like domain
Probab=73.79 E-value=1.3 Score=46.89 Aligned_cols=19 Identities=37% Similarity=0.468 Sum_probs=16.5
Q ss_pred CeeEEEecccCCCCccccc
Q 002982 141 NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (861)
|..++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 5567889999999999985
No 147
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=73.76 E-value=1.4 Score=45.61 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=16.7
Q ss_pred CeeEEEecccCCCCccccc
Q 002982 141 NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (861)
++.|+-.|+||||||.+|.
T Consensus 1 ~GlilI~GptGSGKTTll~ 19 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3678899999999999985
No 148
>PRK09183 transposase/IS protein; Provisional
Probab=73.53 E-value=1.8 Score=46.90 Aligned_cols=44 Identities=23% Similarity=0.332 Sum_probs=26.0
Q ss_pred eceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 111 YDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 111 FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
||.-|.+..+...+..-..... +-.|.| |+-||++|+||||.+.
T Consensus 77 fd~~~~~~~~~~~i~~L~~~~~---i~~~~~--v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 77 YDFTFATGAPQKQLQSLRSLSF---IERNEN--IVLLGPSGVGKTHLAI 120 (259)
T ss_pred cccccCCCCCHHHHHHHhcCCc---hhcCCe--EEEEeCCCCCHHHHHH
Confidence 4555655555544443211111 234544 5679999999999886
No 149
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=73.44 E-value=1.8 Score=48.66 Aligned_cols=28 Identities=32% Similarity=0.437 Sum_probs=20.7
Q ss_pred HHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 132 VVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.+..++.--.+.|+-.|+||||||.||.
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 3334443335778999999999999996
No 150
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=73.24 E-value=2.6e+02 Score=35.27 Aligned_cols=174 Identities=20% Similarity=0.259 Sum_probs=104.4
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhHHHHhHHHHhcCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccCc--
Q 002982 518 DQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDN-- 595 (861)
Q Consensus 518 d~~dllreq~k~l~geva~~~s~lkrl~e~a~~~p~~~~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~-- 595 (861)
.+|--|..|..-+--|=+-=.++| ...|.+.+.-..+..+...+|..|-.++--... -......
T Consensus 265 ~EiqKL~qQL~qve~EK~~L~~~L-------------~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~-l~~~ke~~~ 330 (717)
T PF09730_consen 265 SEIQKLKQQLLQVEREKSSLLSNL-------------QESQKQLEHAQGALSEQQEKINRLTEQLDALRK-LQEDKEQQS 330 (717)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hccchhhhh
Confidence 346667777665554443333333 334567778888888888888888777543222 1110000
Q ss_pred --------cccc--c---cccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhhhhcccccc
Q 002982 596 --------SEVS--Q---VKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALELRNFSPLASYSQRFAEAKSLNGE 662 (861)
Q Consensus 596 --------~~~~--~---ik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (861)
.... . +-..-+.||+-.+..-+.|+..|+..+..|+..+...-..
T Consensus 331 ~~d~~~~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~---------------------- 388 (717)
T PF09730_consen 331 AEDSEKERDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEER---------------------- 388 (717)
T ss_pred hhhcccccccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 0000 0 1111168899999999999999999999999987663220
Q ss_pred ccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhHHhH-------hhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHH
Q 002982 663 HQIDKEIALLKDINEDSRLQVQAAEIEELNRKVTELTE-------AKEQLELRNQKLSEESSYAKGLASAAAVELKALSE 735 (861)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~q~~e~e~lk~~~~~l~e-------~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~e 735 (861)
+.++. ..-..++.+|+.++..+.- .-..|+...+.+..-|.=+-+--++|.=||-.++|
T Consensus 389 ------------~~~ek--~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSE 454 (717)
T PF09730_consen 389 ------------YKQEK--DRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSE 454 (717)
T ss_pred ------------HHHHH--HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 00000 0013445555555554433 55667777777777776666666778888999999
Q ss_pred HHHHHh
Q 002982 736 EVAKLM 741 (861)
Q Consensus 736 evtkl~ 741 (861)
|.+.|=
T Consensus 455 eLAqLY 460 (717)
T PF09730_consen 455 ELAQLY 460 (717)
T ss_pred HHHHHH
Confidence 988773
No 151
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=73.23 E-value=2 Score=44.54 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=20.5
Q ss_pred HHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 132 VVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.|..++...+..++..|+.|+||||+|.
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 3445555555556668999999999985
No 152
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=72.98 E-value=2 Score=49.18 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=17.3
Q ss_pred CCeeEEEecccCCCCccccc
Q 002982 140 INGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM~ 159 (861)
.++.|+..|+||||||+||.
T Consensus 148 ~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 45678889999999999995
No 153
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=72.95 E-value=90 Score=32.67 Aligned_cols=65 Identities=29% Similarity=0.351 Sum_probs=45.5
Q ss_pred HHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhh-HHHHHHHHhhHHHHHHHhhhhhhHHHHHH
Q 002982 688 IEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLA-SAAAVELKALSEEVAKLMNHKERLTAELA 752 (861)
Q Consensus 688 ~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~la-saaavelk~l~eevtkl~~qn~~l~~el~ 752 (861)
..+|..+..+|.+++..|+.+-+.|.....+++.-. -.-+.+-|...+||..|-.+|..|.++|.
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555666666666666666666655554443333 34577889999999999999999999875
No 154
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=72.76 E-value=1.6 Score=45.61 Aligned_cols=16 Identities=44% Similarity=0.727 Sum_probs=13.4
Q ss_pred EEEecccCCCCccccc
Q 002982 144 IFAYGVTSSGKTHTMH 159 (861)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (861)
+..+|.||||||+|+.
T Consensus 26 ~~I~G~TGsGKS~~~~ 41 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTVK 41 (229)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4457999999999985
No 155
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=71.84 E-value=4.6 Score=47.35 Aligned_cols=90 Identities=17% Similarity=0.259 Sum_probs=47.9
Q ss_pred EEEEecCCCChhh-hccCCeEEEecCCCEEEe-CCCC--C---------ceeEeeceecCCCCcchhHHHHHHHHHHHHh
Q 002982 70 TVTVRFRPLSPRE-IRQGEEIAWYADGETILR-NEDN--P---------SIAYAYDRVFGPTTTTRHVYDIAAQHVVSGA 136 (861)
Q Consensus 70 kV~VRVRPl~~~E-~~~g~~~~~~~d~~~iv~-~~~~--~---------~~~F~FD~VF~~~atQeeVY~~~~~plV~~v 136 (861)
..+|++.++...+ +..|..+.+......++. -+.. + .-.-+|+.|.+-+..-+.+.+.+..|+...-
T Consensus 128 ~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~ 207 (438)
T PTZ00361 128 EYYVNILSFVDKEQLEPGCSVLLHNKTHSVVGILLDEVDPLVSVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPE 207 (438)
T ss_pred EEEEeccCcCCHhhCCCCCEEEEcCCCCceEecCccccchhhhhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHH
Confidence 5788888877665 456666666554333322 1110 0 0012444454433333455554444554321
Q ss_pred -hc--CC--CeeEEEecccCCCCccccc
Q 002982 137 -MD--GI--NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 137 -l~--Gy--N~tIfAYGqTGSGKTyTM~ 159 (861)
+. |. ...|+-||++|+|||++..
T Consensus 208 ~~~~~gi~~p~gVLL~GPPGTGKT~LAr 235 (438)
T PTZ00361 208 LYDDIGIKPPKGVILYGPPGTGKTLLAK 235 (438)
T ss_pred HHHhcCCCCCcEEEEECCCCCCHHHHHH
Confidence 22 21 2347779999999999875
No 156
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=71.54 E-value=2.9e+02 Score=35.16 Aligned_cols=63 Identities=19% Similarity=0.247 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHH
Q 002982 684 QAAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTA 749 (861)
Q Consensus 684 q~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~ 749 (861)
+--++++|.-++.. ...+..+-.+.+-|..|.++.++-++.|-.|+--|-+-|-++- |+|...
T Consensus 526 ~rek~~kl~~ql~k-~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E--~EK~~k 588 (775)
T PF10174_consen 526 KREKHEKLEKQLEK-LRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAE--NEKNDK 588 (775)
T ss_pred hhhHHHHHHHHHHH-HHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhH
Confidence 34455555555555 3334566667788888888888777777777777776555554 444433
No 157
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=71.25 E-value=54 Score=35.66 Aligned_cols=69 Identities=32% Similarity=0.353 Sum_probs=24.7
Q ss_pred HHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhc
Q 002982 687 EIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAK 755 (861)
Q Consensus 687 e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~~~~ 755 (861)
|-+.|.++..++.+++..|+....+..+|=..--.=...+..++..|.+++.+---+..+|..+|..++
T Consensus 48 ea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar 116 (246)
T PF00769_consen 48 EAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAR 116 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555544444433222222223333344444444444444444444444333
No 158
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=71.19 E-value=2.3 Score=48.51 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=17.9
Q ss_pred CCeeEEEecccCCCCccccc
Q 002982 140 INGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM~ 159 (861)
-.+.|+..|+||||||.||.
T Consensus 133 ~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 46889999999999999985
No 159
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=70.97 E-value=20 Score=31.85 Aligned_cols=65 Identities=18% Similarity=0.249 Sum_probs=47.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhcccCccCcccccccccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHHHHH
Q 002982 563 KLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDA 637 (861)
Q Consensus 563 ~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~ik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~ 637 (861)
+|+.+|...+.+...|.+++.-...... .+ ...+--.--||..++.+|.+|++++..|+++|.+.
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k------~L----~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENK------RL----RRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6888999999999999998875443311 01 11222233469999999999999999999998653
No 160
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=70.13 E-value=2.5 Score=42.87 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=22.2
Q ss_pred HHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 130 QHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 130 ~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
..+...+-.|.+.+++-||+.|+|||+.|.
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHHH
Confidence 444454556778899999999999999885
No 161
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=70.10 E-value=3.4e+02 Score=35.38 Aligned_cols=42 Identities=38% Similarity=0.298 Sum_probs=22.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHhhhc
Q 002982 801 YEAALLEKDQQEAELQRKVEESKKREAYLENELANMWVLVAKLKKS 846 (861)
Q Consensus 801 le~~l~ek~~~e~el~~~~ee~k~~e~~lenelanmwvlvaklkk~ 846 (861)
-|..+.|+.-.+-+.++..-|-. -++.|=++|-+-|-+|-+.
T Consensus 894 ~e~~~~e~~~~~l~~kkle~e~~----~~~~e~~~~~k~v~~l~~k 935 (1174)
T KOG0933|consen 894 QEKCLSEKSDGELERKKLEHEVT----KLESEKANARKEVEKLLKK 935 (1174)
T ss_pred HHHHHHHhhcccchHHHHHhHHH----HhhhhHHHHHHHHHHHHHh
Confidence 34455555554444444443332 3556667777777777544
No 162
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=69.86 E-value=3 Score=42.76 Aligned_cols=18 Identities=33% Similarity=0.578 Sum_probs=15.3
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
-.|+-||++|+||||...
T Consensus 48 ~~l~l~G~~G~GKThLa~ 65 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAV 65 (178)
T ss_dssp -EEEEEESTTSSHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHH
Confidence 458889999999999875
No 163
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=69.60 E-value=3.1 Score=44.16 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=18.3
Q ss_pred hcCCCeeEEEecccCCCCccccc
Q 002982 137 MDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 137 l~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
+....+.++-+|++|+|||+.+.
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHHH
Confidence 34445678889999999999985
No 164
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=69.57 E-value=3.7 Score=44.56 Aligned_cols=50 Identities=14% Similarity=0.061 Sum_probs=29.8
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCcccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMHT 160 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~g 160 (861)
.|.|..+-.....+..+|... ..++..+-.|. .++-||++|+||||-...
T Consensus 75 ~~~~~d~~~~~~~~~~~l~~~-~~~~~~~~~~~--nl~l~G~~G~GKThLa~A 124 (254)
T COG1484 75 TFEEFDFEFQPGIDKKALEDL-ASLVEFFERGE--NLVLLGPPGVGKTHLAIA 124 (254)
T ss_pred CcccccccCCcchhHHHHHHH-HHHHHHhccCC--cEEEECCCCCcHHHHHHH
Confidence 344333333344566666633 45555555443 355699999999998863
No 165
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=69.52 E-value=3.8e+02 Score=35.70 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=13.2
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
-+-.+|-.|+|||..|-
T Consensus 19 ~t~i~GTNG~GKTTlLR 35 (1201)
T PF12128_consen 19 HTHICGTNGVGKTTLLR 35 (1201)
T ss_pred ceeeecCCCCcHHHHHH
Confidence 34457999999999873
No 166
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=69.40 E-value=2.9 Score=45.50 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=20.8
Q ss_pred HHHhhcCCCeeEEEecccCCCCccccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
+..++..-.+.|+-.|.||||||.||.
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 344555555678889999999999985
No 167
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=68.81 E-value=3.8 Score=50.29 Aligned_cols=66 Identities=30% Similarity=0.422 Sum_probs=44.8
Q ss_pred EeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccc-----------------------------
Q 002982 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH----------------------------- 159 (861)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~----------------------------- 159 (861)
|....-|.|.-.|...|.. ++..+-.|.... ..+|.|||||||||-
T Consensus 2 f~~~~~~~~~~~Q~~ai~~----l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK----LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred ceeccCCCCChHHHHHHHH----HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHH
Confidence 4555567888889887775 445555554222 368999999999984
Q ss_pred -cCCccceeeEEEEEEeccee
Q 002982 160 -TPNREFLLRVSYLEIYNEVV 179 (861)
Q Consensus 160 -g~~~~f~V~vSylEIYnE~I 179 (861)
-++......||||.-|.-..
T Consensus 77 f~p~~~V~~f~sy~d~y~pe~ 97 (655)
T TIGR00631 77 FFPENAVEYFVSYYDYYQPEA 97 (655)
T ss_pred hCCCCeEEEEeeecccCCccc
Confidence 12333566789999886543
No 168
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=68.17 E-value=4.1 Score=45.73 Aligned_cols=36 Identities=25% Similarity=0.223 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhcC-CCeeEEEecccCCCCccccc
Q 002982 124 VYDIAAQHVVSGAMDG-INGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 124 VY~~~~~plV~~vl~G-yN~tIfAYGqTGSGKTyTM~ 159 (861)
+++..+..++...+.+ .---.+-||+.|+|||.|..
T Consensus 39 ~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStal 75 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTAL 75 (346)
T ss_pred cchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHH
Confidence 3444444455555544 33445679999999999974
No 169
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=67.80 E-value=3.7 Score=46.60 Aligned_cols=37 Identities=19% Similarity=0.357 Sum_probs=28.3
Q ss_pred CcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 119 TTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 119 atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
..|+.+|+.+...+.. .....+|..|+.|+||||.+.
T Consensus 4 ~eQ~~~~~~v~~~~~~----~~~~~~fv~G~~GtGKs~l~~ 40 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIEN----EEGLNFFVTGPAGTGKSFLIK 40 (364)
T ss_pred HHHHHHHHHHHHHHHc----cCCcEEEEEcCCCCChhHHHH
Confidence 4689999987665543 344567889999999999984
No 170
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=67.55 E-value=2.8 Score=46.52 Aligned_cols=28 Identities=32% Similarity=0.351 Sum_probs=20.8
Q ss_pred HHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 131 HVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 131 plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.++..++.+ .+.|+-.|.||||||.+|.
T Consensus 123 ~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 123 DVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 445555553 4567889999999999985
No 171
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=67.27 E-value=1.8e+02 Score=31.93 Aligned_cols=49 Identities=24% Similarity=0.342 Sum_probs=25.7
Q ss_pred HHHHHhhhhhhhhhhHHHHhHHHHhcCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002982 525 EQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIA 583 (861)
Q Consensus 525 eq~k~l~geva~~~s~lkrl~e~a~~~p~~~~~~~~~~~l~~ei~~k~~qi~~le~~i~ 583 (861)
++.|-|.-=.+..+-..|+| ..++++++.++.+++.....|+.+..||.
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~----------~~~~~e~e~le~qv~~~e~ei~~~r~r~~ 76 (239)
T COG1579 28 EIRKALKKAKAELEALNKAL----------EALEIELEDLENQVSQLESEIQEIRERIK 76 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444554 33445566666666555555555555554
No 172
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=67.16 E-value=3.9 Score=45.19 Aligned_cols=31 Identities=29% Similarity=0.362 Sum_probs=26.0
Q ss_pred HHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 129 AQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 129 ~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
..++++++.--.-+.|+..|.|||||+.||-
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 4667777777777889999999999999984
No 173
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=66.58 E-value=2.2 Score=39.62 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=14.2
Q ss_pred EEEecccCCCCccccc
Q 002982 144 IFAYGVTSSGKTHTMH 159 (861)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (861)
|+-||++|+|||+...
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 5789999999999875
No 174
>PTZ00121 MAEBL; Provisional
Probab=66.50 E-value=44 Score=44.31 Aligned_cols=101 Identities=27% Similarity=0.290 Sum_probs=48.5
Q ss_pred hhhhhHHHHHHHH----hhHHHHHHHhhhhhhHHHHHHhhcCCCcccccccccCCcccccccccC-CCCChHHHHHHHHH
Q 002982 719 AKGLASAAAVELK----ALSEEVAKLMNHKERLTAELAAAKSSPTQRRTSAVRNGRRDGQIKRQN-QDGSSLDLKRELAL 793 (861)
Q Consensus 719 ak~lasaaavelk----~l~eevtkl~~qn~~l~~el~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~~~~~~~el~~ 793 (861)
+|-||-+-|-||| +|-|||-||-.+-.+.-+|-+--.+-...+ .-..+|.+ .-.-+++|++.-..
T Consensus 1575 ~k~~a~rkaee~~~~~~~~~~~~~~~~~~~~~~kae~~kk~ee~~kk----------~E~~kk~eeekKk~Eelkk~eeE 1644 (2084)
T PTZ00121 1575 DKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIK----------AEELKKAEEEKKKVEQLKKKEAE 1644 (2084)
T ss_pred hhhhhhhhHHHHHhHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhHHH
Confidence 4556667777775 466788888777766666544222111000 00001110 00124555555554
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHH
Q 002982 794 SREREVSYEAALLEKDQQEAELQRKVEESKKREAYL 829 (861)
Q Consensus 794 ~~~re~~le~~l~ek~~~e~el~~~~ee~k~~e~~l 829 (861)
.+.|..++-.+=-|+..+.+|++++.+|.|+|.+.+
T Consensus 1645 ~kkk~Ea~kK~EEE~kkraeEeaKk~EEekKKaEe~ 1680 (2084)
T PTZ00121 1645 EKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEA 1680 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443333333344456666666666655443
No 175
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=66.49 E-value=1.2e+02 Score=31.96 Aligned_cols=142 Identities=23% Similarity=0.296 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccCcccccccccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHh
Q 002982 560 EIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALE 639 (861)
Q Consensus 560 ~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~ik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~~~ 639 (861)
-|+.|++||.+.+.+....++.|.+. ++.|+.|-|=|..-.-|+.+|+..+......-..+-.
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei-----------------~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~ 90 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEI-----------------SQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQN 90 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38888889988888888888876642 3568888888877777777766655543322111000
Q ss_pred hcCCCCcchhhhhhhhhccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhh
Q 002982 640 LRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDINEDSRLQVQAAEIEELNRKVTELTEAKEQLELRNQKLSEESSYA 719 (861)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~ya 719 (861)
. .. -.... +-.+....-|.|.|.|+...+..+.+.|..+-.....|.-
T Consensus 91 ~----------------k~------------rl~~~--ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evq-- 138 (201)
T PF13851_consen 91 L----------------KA------------RLKEL--EKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQ-- 138 (201)
T ss_pred H----------------HH------------HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 0 00 00000 1122334668888899999999999998877654443321
Q ss_pred hhhhHHHHHHHHhh--HHHHHHHhhhhhhHHHHHHhhcC
Q 002982 720 KGLASAAAVELKAL--SEEVAKLMNHKERLTAELAAAKS 756 (861)
Q Consensus 720 k~lasaaavelk~l--~eevtkl~~qn~~l~~el~~~~~ 756 (861)
-=.++||+ .-.|..|..+.++-.++|..+-.
T Consensus 139 ------Qk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~ 171 (201)
T PF13851_consen 139 ------QKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLA 171 (201)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12355654 46678888888888888876553
No 176
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=66.40 E-value=4.7 Score=46.59 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=40.3
Q ss_pred eeEeeceecCCCCcchhHHHHHHHHHHHHhhc----CCCeeEEEecccCCCCccccc
Q 002982 107 IAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMD----GINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 107 ~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~----GyN~tIfAYGqTGSGKTyTM~ 159 (861)
..+.||.+.+.-.--..+.+.++..++.+++. -.--.|.-||+.|+|||+...
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAr 166 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCE 166 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHH
Confidence 35778888777666777888888888888874 333457779999999999854
No 177
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=65.71 E-value=3.2 Score=42.10 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=13.3
Q ss_pred eEEEecccCCCCcccccc
Q 002982 143 TIFAYGVTSSGKTHTMHT 160 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~g 160 (861)
..+..|+.|||||+|+..
T Consensus 19 ~~~i~GpPGTGKT~~l~~ 36 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLAS 36 (236)
T ss_dssp -EEEE-STTSSHHHHHHH
T ss_pred CEEEECCCCCChHHHHHH
Confidence 456689999999999863
No 178
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=65.64 E-value=3.3 Score=46.48 Aligned_cols=28 Identities=29% Similarity=0.372 Sum_probs=19.9
Q ss_pred HHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 131 HVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 131 plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.++..++.+. ..|+-.|.||||||++|.
T Consensus 139 ~~L~~~v~~~-~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 139 EAIIAAVRAH-RNILVIGGTGSGKTTLVN 166 (319)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 4455555543 556667999999998874
No 179
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=65.25 E-value=94 Score=37.36 Aligned_cols=133 Identities=18% Similarity=0.234 Sum_probs=81.8
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhHHHHhHHHHhcCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccCcc
Q 002982 517 IDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNS 596 (861)
Q Consensus 517 ~d~~dllreq~k~l~geva~~~s~lkrl~e~a~~~p~~~~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~ 596 (861)
...+|+|+|-..||.+-|+.....||-|++.-.. -+..+.-|.+-|+.-|.+.+.++..=|++-.+.+..
T Consensus 336 ~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~a--Ls~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~-------- 405 (531)
T PF15450_consen 336 QSELDLLQEKSQILEDSVAELMRQLKDLDDHILA--LSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQ-------- 405 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 4568999999999999999999999988774111 112233345566666666666666655555544432
Q ss_pred cccccccchhhhHHHHHHhH-HhhhhhHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhhhhccccccccchhhhhhhhhh
Q 002982 597 EVSQVKAADNRIIQEQLNQK-ICECEGLQETIGFLKQQLNDALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDI 675 (861)
Q Consensus 597 ~~~~ik~adnrilqeql~~k-~~e~~elqe~v~~l~qql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (861)
++.. ..-..++||+|..|.+|+......-.. ++.....+ +
T Consensus 406 ----------------~q~e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~----------------------~Ksd~d~k-I 446 (531)
T PF15450_consen 406 ----------------WQNEMEKHLKEVQEKVDSLPQQIEEVSDKCDL----------------------HKSDSDTK-I 446 (531)
T ss_pred ----------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH----------------------HHhhhhhh-c
Confidence 1122 244678999999999999886554322 11111111 1
Q ss_pred hhhHHHHHHHHHHHHHHHHhhHHhH
Q 002982 676 NEDSRLQVQAAEIEELNRKVTELTE 700 (861)
Q Consensus 676 ~~~~~~~~q~~e~e~lk~~~~~l~e 700 (861)
.. --+.-..||..++++...|..
T Consensus 447 dt--E~k~R~~eV~~vRqELa~lLs 469 (531)
T PF15450_consen 447 DT--EGKAREREVGAVRQELATLLS 469 (531)
T ss_pred cH--HHHHHHHHHHHHHHHHHHHHH
Confidence 11 123457789999998887554
No 180
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=65.08 E-value=4.9e+02 Score=35.28 Aligned_cols=85 Identities=8% Similarity=0.116 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccCcccccc----cccchhh--hHHHHHHhHHhhhhhHHHHHH
Q 002982 555 EQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQ----VKAADNR--IIQEQLNQKICECEGLQETIG 628 (861)
Q Consensus 555 ~~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~----ik~adnr--ilqeql~~k~~e~~elqe~v~ 628 (861)
..|+.+|..|..+|.+...+++.|++|+..--..-..-.+.-++-. +..|.-. -.++++.....+.......+.
T Consensus 745 ~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~ 824 (1353)
T TIGR02680 745 AELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAAAWK 824 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777777666544322111111112211 3322221 123344444445555555555
Q ss_pred HHHHHHHHHHh
Q 002982 629 FLKQQLNDALE 639 (861)
Q Consensus 629 ~l~qql~~~~~ 639 (861)
..++++..+..
T Consensus 825 ~a~~~l~~aaa 835 (1353)
T TIGR02680 825 QARRELERDAA 835 (1353)
T ss_pred HHHHHHHHHHh
Confidence 55565555443
No 181
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=64.93 E-value=5 Score=43.98 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=26.0
Q ss_pred EeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
-+||.+++ |.++.+. +...+-.|....++-||++|+|||+++.
T Consensus 12 ~~~~~~~g----~~~~~~~----L~~~~~~~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 12 ALLEDILG----QDEVVER----LSRAVDSPNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred CcHHHhcC----CHHHHHH----HHHHHhCCCCceEEEECCCCCCHHHHHH
Confidence 35777664 3444332 2222223443457889999999999884
No 182
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=64.84 E-value=3 Score=45.37 Aligned_cols=127 Identities=17% Similarity=0.242 Sum_probs=72.2
Q ss_pred EeeceecCCCCcchhHHHHHHHHHHHHhhcCCCee-EEEecccCCCCccccccCCccce-eeEEEEEEecceeeeccCCC
Q 002982 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGT-IFAYGVTSSGKTHTMHTPNREFL-LRVSYLEIYNEVVNDLLNPA 186 (861)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~t-IfAYGqTGSGKTyTM~g~~~~f~-V~vSylEIYnE~I~DLL~p~ 186 (861)
..+|...+-+...+.+.+.+ ..++.|..+- ++-||..|+|||.++..--..|. -.+-.+||..+.+.||-.--
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt-----~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~ 98 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENT-----EQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELL 98 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHH-----HHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHH
Confidence 56777776666656666554 4567776543 66699999999998852111110 01677999988877764210
Q ss_pred CCCceeeeCCCC--eEEcccEEEEe-cCHHHHHHHHHHhHhccccccccCCCCCCCceEEE
Q 002982 187 GQNLRIREDSQG--TFVEGVKEEVV-LSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIF 244 (861)
Q Consensus 187 ~~~L~Ired~~G--~~V~gLse~~V-~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~If 244 (861)
. .++..+.- +|+.+|+-..- .++..+..+|+-|...| ....-+..+|.|-|.|-
T Consensus 99 ~---~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~-P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 99 D---LLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIYATSNRRHLVP 155 (249)
T ss_pred H---HHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEEEecchhhccc
Confidence 0 01111111 45556552222 23566677777666554 33444556677777664
No 183
>PF13479 AAA_24: AAA domain
Probab=64.76 E-value=4 Score=42.74 Aligned_cols=21 Identities=33% Similarity=0.376 Sum_probs=17.1
Q ss_pred CeeEEEecccCCCCccccccC
Q 002982 141 NGTIFAYGVTSSGKTHTMHTP 161 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~g~ 161 (861)
+..++.||++|+|||++...-
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC
Confidence 356889999999999987543
No 184
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=64.66 E-value=3.7e+02 Score=33.72 Aligned_cols=136 Identities=24% Similarity=0.311 Sum_probs=74.5
Q ss_pred HHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHH-HHHhhHHHHHHHhhhhhhHHHHHHhhcCCCcccccccccC
Q 002982 690 ELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAV-ELKALSEEVAKLMNHKERLTAELAAAKSSPTQRRTSAVRN 768 (861)
Q Consensus 690 ~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaav-elk~l~eevtkl~~qn~~l~~el~~~~~~~~~~~~~~~~~ 768 (861)
.|..++--++-+.+-|..+-.-| -|+||.+.-- ||+---|-+.-||.+-+||+++.++.-.-. ++ .|-
T Consensus 413 ~lEkKvqa~~kERDalr~e~ksl------k~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iI--kK---LRA 481 (961)
T KOG4673|consen 413 TLEKKVQALTKERDALRREQKSL------KKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAII--KK---LRA 481 (961)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH------HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--HH---HHH
Confidence 34445556666677666654433 3578887776 888888999999999999999977543111 00 000
Q ss_pred CcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHh
Q 002982 769 GRRDGQIKRQNQDGSSLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESKKREAYLENELANMWVLVAKL 843 (861)
Q Consensus 769 ~r~~~~~~~~~~~~~~~~~~~el~~~~~re~~le~~l~ek~~~e~el~~~~ee~k~~e~~lenelanmwvlvakl 843 (861)
--+++-..-..-+..+-.|.-|++ -|+..|..|+..|.-++.-|+------..-+.+++|.-++.+-|
T Consensus 482 k~ke~etl~~K~ge~i~~L~sE~~-------~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~l 549 (961)
T KOG4673|consen 482 KIKEAETLEEKKGELITKLQSEEN-------KLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAAL 549 (961)
T ss_pred HhhhhhHHHHHhhhHHHHHHHHHH-------HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 001111000001112334444444 57788888887777666555432211122245666655555544
No 185
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=64.52 E-value=2.6 Score=41.61 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=14.6
Q ss_pred hhcCCCeeEEEecccCCCCccccc
Q 002982 136 AMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 136 vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
...|-..+|+-+|..|+|||+.+.
T Consensus 19 ~~~~~~~~~ll~G~~G~GKT~ll~ 42 (185)
T PF13191_consen 19 AQSGSPRNLLLTGESGSGKTSLLR 42 (185)
T ss_dssp TSS-----EEE-B-TTSSHHHHHH
T ss_pred HHcCCCcEEEEECCCCCCHHHHHH
Confidence 346777889999999999999985
No 186
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=63.80 E-value=33 Score=32.10 Aligned_cols=66 Identities=24% Similarity=0.438 Sum_probs=50.2
Q ss_pred cchhhHHHHHHHHHHhhhhhhhhhhHHHHhHHHHhcCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccc
Q 002982 515 KTIDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSH 590 (861)
Q Consensus 515 ~~~d~~dllreq~k~l~geva~~~s~lkrl~e~a~~~p~~~~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~ 590 (861)
...-++|-||.+.+.++.+|+--... .++-+.+..+++.++++|++...++..+|.++-.....=|
T Consensus 40 ~l~~~~e~lr~~rN~~sk~I~~~~~~----------~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~iP 105 (108)
T PF02403_consen 40 ELQQELEELRAERNELSKEIGKLKKA----------GEDAEELKAEVKELKEEIKELEEQLKELEEELNELLLSIP 105 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHT----------TCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhC----------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34456788888888888887732211 1677888899999999999999999999999887665543
No 187
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=63.79 E-value=68 Score=32.50 Aligned_cols=65 Identities=28% Similarity=0.400 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhc
Q 002982 686 AEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAK 755 (861)
Q Consensus 686 ~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~~~~ 755 (861)
.|+..|..+..+|.++-..|...+..|..|-. .|.+.-. ...|..+|+.|..+++.|...|...+
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~---~L~~~~t--~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELA---SLSSEPT--NEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666666655555544321 2222111 12345556666666666666666555
No 188
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=63.78 E-value=2.7 Score=43.78 Aligned_cols=17 Identities=41% Similarity=0.438 Sum_probs=15.0
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 47788999999999985
No 189
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=63.60 E-value=4.8 Score=38.95 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=16.9
Q ss_pred HhhcCCCeeEEEecccCCCCccccc
Q 002982 135 GAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 135 ~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.++.+. ..++..|+||||||+++.
T Consensus 19 ~~~~~~-~~~~i~~~~GsGKT~~~~ 42 (201)
T smart00487 19 ALLSGL-RDVILAAPTGSGKTLAAL 42 (201)
T ss_pred HHHcCC-CcEEEECCCCCchhHHHH
Confidence 344442 345667999999999875
No 190
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=63.20 E-value=1.2e+02 Score=31.72 Aligned_cols=75 Identities=21% Similarity=0.305 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhh-hhcccCc--cCcccccc-cccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHHH
Q 002982 560 EIKKLRDEIKGKNDQIALLEKQIADS-IMTSHNT--MDNSEVSQ-VKAADNRIIQEQLNQKICECEGLQETIGFLKQQLN 635 (861)
Q Consensus 560 ~~~~l~~ei~~k~~qi~~le~~i~~s-~~~s~~~--~~~~~~~~-ik~adnrilqeql~~k~~e~~elqe~v~~l~qql~ 635 (861)
-|.+|...|..-|+.++-||+++..+ ...++.. ....+.+. +.. +=-+|.+.-.-|.+|.+-...|+.||.
T Consensus 17 Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~-----~l~rLeEEqqR~~~L~qvN~lLReQLE 91 (182)
T PF15035_consen 17 LVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEE-----ALIRLEEEQQRSEELAQVNALLREQLE 91 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHH-----HHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 38899999999999999999999543 1111111 11112222 221 334566777778888888888888876
Q ss_pred HHHh
Q 002982 636 DALE 639 (861)
Q Consensus 636 ~~~~ 639 (861)
++-.
T Consensus 92 q~~~ 95 (182)
T PF15035_consen 92 QARK 95 (182)
T ss_pred HHHH
Confidence 6533
No 191
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=63.12 E-value=3 Score=38.64 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=15.0
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
+|+-.|++|||||+...
T Consensus 1 vI~I~G~~gsGKST~a~ 17 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAK 17 (121)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred CEEEECCCCCCHHHHHH
Confidence 47889999999999875
No 192
>PLN03188 kinesin-12 family protein; Provisional
Probab=62.48 E-value=5.2e+02 Score=34.69 Aligned_cols=51 Identities=25% Similarity=0.355 Sum_probs=37.8
Q ss_pred cCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccCcccccccccchhhhHHHHHHhHHhhhhhHHHHHHH
Q 002982 550 RNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQVKAADNRIIQEQLNQKICECEGLQETIGF 629 (861)
Q Consensus 550 ~~p~~~~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~ik~adnrilqeql~~k~~e~~elqe~v~~ 629 (861)
++|+=.+++.|+|.+.+|...-+. ..|| .|-+-|+|.|+.
T Consensus 958 ~~p~~~~~~~e~~~~~~e~~~~~~---------------------~~d~-------------------~ErEvll~eI~d 997 (1320)
T PLN03188 958 NHPEVLRTKIELKRVQDELEHYRN---------------------FYDM-------------------GEREVLLEEIQD 997 (1320)
T ss_pred cChhhhhhhHHHHHHHHHHHHHHh---------------------hccc-------------------hhHHHHHHHHHH
Confidence 899888888888888888776333 1122 266778999999
Q ss_pred HHHHHHHHHhh
Q 002982 630 LKQQLNDALEL 640 (861)
Q Consensus 630 l~qql~~~~~~ 640 (861)
||-||.-.+..
T Consensus 998 lr~qL~~~~d~ 1008 (1320)
T PLN03188 998 LRSQLQYYIDS 1008 (1320)
T ss_pred HHHHHHhhccc
Confidence 99999776543
No 193
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=61.96 E-value=33 Score=37.89 Aligned_cols=40 Identities=18% Similarity=0.294 Sum_probs=30.7
Q ss_pred hhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcC
Q 002982 717 SYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKS 756 (861)
Q Consensus 717 ~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~~~~~ 756 (861)
.|-..+++...-+++.+..++++|-.++..+.+++..+..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~ 163 (301)
T PF14362_consen 124 AIQAQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQ 163 (301)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444477778888899999999999999988887764
No 194
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=61.81 E-value=3.4 Score=44.08 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=16.3
Q ss_pred CCeeEEEecccCCCCccccc
Q 002982 140 INGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM~ 159 (861)
.++.++..|..|||||+||.
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~ 31 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLL 31 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHH
Confidence 67888888999999999995
No 195
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=61.36 E-value=11 Score=34.24 Aligned_cols=32 Identities=38% Similarity=0.513 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhHHhHhhhh-------hhhhhchhhhhh
Q 002982 685 AAEIEELNRKVTELTEAKEQ-------LELRNQKLSEES 716 (861)
Q Consensus 685 ~~e~e~lk~~~~~l~e~k~~-------l~~~n~kl~ee~ 716 (861)
+-|||+||.+...|.++... |+-.|++|-+|-
T Consensus 24 qmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~ 62 (79)
T PRK15422 24 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 62 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 55899999999999888555 888888887763
No 196
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=61.11 E-value=2.5e+02 Score=31.43 Aligned_cols=68 Identities=25% Similarity=0.345 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhh-------hhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHH
Q 002982 685 AAEIEELNRKVTELTEAKEQLELRNQKLSEESS-------YAKGLASAAAVELKALSEEVAKLMNHKERLTAELA 752 (861)
Q Consensus 685 ~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~-------yak~lasaaavelk~l~eevtkl~~qn~~l~~el~ 752 (861)
-.|+--||.|.-.|.|.=+-|+..++||.-|.- |--|.-+++---|..|..|+.++-.+=+|.-.+..
T Consensus 59 k~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 59 KNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 346667999999999999999999999998853 33444444455666666666666555555544444
No 197
>PRK11281 hypothetical protein; Provisional
Probab=61.03 E-value=4.2e+02 Score=35.20 Aligned_cols=29 Identities=17% Similarity=0.077 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 002982 792 ALSREREVSYEAALLEKDQQEAELQRKVEES 822 (861)
Q Consensus 792 ~~~~~re~~le~~l~ek~~~e~el~~~~ee~ 822 (861)
+.-.++-..|..++.+|-+.++|- .++|+
T Consensus 237 ~~~~~~~~~lq~~in~kr~~~se~--~~~~a 265 (1113)
T PRK11281 237 QRLEHQLQLLQEAINSKRLTLSEK--TVQEA 265 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 333334467777777777766665 55555
No 198
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=60.58 E-value=41 Score=40.91 Aligned_cols=70 Identities=30% Similarity=0.395 Sum_probs=38.2
Q ss_pred HhhHHHHHHHhhhhhhHHHHHHhhcCCCcccccccccCCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 002982 731 KALSEEVAKLMNHKERLTAELAAAKSSPTQRRTSAVRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSYEAALLEKDQ 810 (861)
Q Consensus 731 k~l~eevtkl~~qn~~l~~el~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~el~~~~~re~~le~~l~ek~~ 810 (861)
++|.-++-.|-..+++|.++|+..+... + .. .-..+|+.++..|=.-||-.|+|+..
T Consensus 439 ~~L~~~~ee~k~eie~L~~~l~~~~r~~-----------~-~~-----------~~~~rei~~~~~~I~~L~~~L~e~~~ 495 (652)
T COG2433 439 SELKRELEELKREIEKLESELERFRREV-----------R-DK-----------VRKDREIRARDRRIERLEKELEEKKK 495 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H-HH-----------HhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666777777777665211 0 00 01145555555555666666666666
Q ss_pred HHHHHHHHHHHhh
Q 002982 811 QEAELQRKVEESK 823 (861)
Q Consensus 811 ~e~el~~~~ee~k 823 (861)
+=.+|.+++++.+
T Consensus 496 ~ve~L~~~l~~l~ 508 (652)
T COG2433 496 RVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665544
No 199
>PRK10884 SH3 domain-containing protein; Provisional
Probab=60.13 E-value=35 Score=36.28 Aligned_cols=73 Identities=8% Similarity=0.180 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcC
Q 002982 681 LQVQAAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKS 756 (861)
Q Consensus 681 ~~~q~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~~~~~ 756 (861)
+...+.|+++|+.+..++... +..+...|.++..=++...+..-=|.+.|.+|++++..+|..|.+++...+.
T Consensus 95 lp~le~el~~l~~~l~~~~~~---~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 95 VPDLENQVKTLTDKLNNIDNT---WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334466777777666555443 3333434444333345555555566777888888888888888887777664
No 200
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=59.72 E-value=4.4e+02 Score=33.15 Aligned_cols=37 Identities=27% Similarity=0.357 Sum_probs=28.3
Q ss_pred hhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcC
Q 002982 720 KGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKS 756 (861)
Q Consensus 720 k~lasaaavelk~l~eevtkl~~qn~~l~~el~~~~~ 756 (861)
+++|++..+||-+|-...+++.-|+.++-.+|..+..
T Consensus 159 ~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~l~~~~~ 195 (698)
T KOG0978|consen 159 RELASTRMEELEKLQLYSDEILRQLDRFRVELRSLKE 195 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3577788888888888888888888888888855543
No 201
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=59.64 E-value=85 Score=35.39 Aligned_cols=59 Identities=27% Similarity=0.420 Sum_probs=10.5
Q ss_pred HHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHh
Q 002982 687 EIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAA 753 (861)
Q Consensus 687 e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~~ 753 (861)
=+++|+.+..++..+++....--.+|..+..+..++ +.+-+|+.+|..+.++|.+||..
T Consensus 10 l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~--------~~~~~el~~le~Ee~~l~~eL~~ 68 (314)
T PF04111_consen 10 LLEQLDKQLEQAEKERDTYQEFLKKLEEESDSEEDI--------EELEEELEKLEQEEEELLQELEE 68 (314)
T ss_dssp --------------------------------HH----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777766666666433333332 33334444444444444444443
No 202
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=59.49 E-value=2.8e+02 Score=30.56 Aligned_cols=65 Identities=17% Similarity=0.229 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccCcccccccccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHH
Q 002982 555 EQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQVKAADNRIIQEQLNQKICECEGLQETIGFLKQQL 634 (861)
Q Consensus 555 ~~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~ik~adnrilqeql~~k~~e~~elqe~v~~l~qql 634 (861)
.+++.++.++..++..-+.+....-.... .--.+..-|..+|..-+....+|+..|..|+.+|
T Consensus 71 a~l~~e~~~l~~e~~~~r~k~e~e~~~~~-----------------~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl 133 (312)
T PF00038_consen 71 ARLELEIDNLKEELEDLRRKYEEELAERK-----------------DLEEELESLRKDLDEETLARVDLENQIQSLKEEL 133 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhhhHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHH
Confidence 35555666666666666655544411110 1112234444666666666677777777777776
Q ss_pred HH
Q 002982 635 ND 636 (861)
Q Consensus 635 ~~ 636 (861)
.-
T Consensus 134 ~f 135 (312)
T PF00038_consen 134 EF 135 (312)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 203
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=59.41 E-value=8.2 Score=44.63 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=16.8
Q ss_pred CeeEEEecccCCCCccccc
Q 002982 141 NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (861)
...|+.+|+||+|||.|+.
T Consensus 174 ~~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIA 192 (388)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4678899999999999985
No 204
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=59.14 E-value=4.8 Score=47.92 Aligned_cols=110 Identities=20% Similarity=0.311 Sum_probs=59.2
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccc-----cC-CccceeeEEEEEEecceeee
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH-----TP-NREFLLRVSYLEIYNEVVND 181 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~-----g~-~~~f~V~vSylEIYnE~I~D 181 (861)
.|.||.+++.+..-..+++.+. . +...+..|+-+|.+||||++.-. .. ...-.|.|.|-.+..+.+-.
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~-----~-~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~ 265 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQAR-----V-VARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLES 265 (534)
T ss_pred cCccCceEECCHHHHHHHHHHH-----H-HhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHH
Confidence 4788988887654444444322 1 23667889999999999998753 11 12223444443333222211
Q ss_pred -ccCCCC---------CCceeeeCCCC-eEEcccEEEEecCHHHHHHHHHHhH
Q 002982 182 -LLNPAG---------QNLRIREDSQG-TFVEGVKEEVVLSPAHALSLIAAGE 223 (861)
Q Consensus 182 -LL~p~~---------~~L~Ired~~G-~~V~gLse~~V~S~ee~~~lL~~G~ 223 (861)
|+.... ..-.+....+| .|+.++......-...++.+|..+.
T Consensus 266 ~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~ 318 (534)
T TIGR01817 266 ELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGE 318 (534)
T ss_pred HHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCc
Confidence 221110 00112223345 5777777766666666777776554
No 205
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=59.04 E-value=5.3 Score=45.06 Aligned_cols=28 Identities=36% Similarity=0.373 Sum_probs=19.3
Q ss_pred HHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 131 HVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 131 plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.++..++.+- ..|+-.|.||||||.+|.
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 3344444432 357788999999999984
No 206
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=58.67 E-value=1.4e+02 Score=31.28 Aligned_cols=63 Identities=25% Similarity=0.365 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccCcccccccccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHHH
Q 002982 556 QLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLN 635 (861)
Q Consensus 556 ~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~ik~adnrilqeql~~k~~e~~elqe~v~~l~qql~ 635 (861)
+.+..+.+|+.+|...+..|..|+.+|...-..-... +.-.....++.+|++++..|+.+|.
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~------------------~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES------------------EEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999999999998774432211 4445677888899999999999987
Q ss_pred H
Q 002982 636 D 636 (861)
Q Consensus 636 ~ 636 (861)
.
T Consensus 128 ~ 128 (188)
T PF03962_consen 128 K 128 (188)
T ss_pred H
Confidence 4
No 207
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=58.54 E-value=5.9 Score=40.43 Aligned_cols=29 Identities=28% Similarity=0.292 Sum_probs=19.7
Q ss_pred HHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 130 QHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 130 ~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.+++..++.. ...+.-.|+||||||.+|.
T Consensus 15 ~~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 15 AAYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 3444444543 3456678999999999874
No 208
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=58.51 E-value=6.2 Score=43.17 Aligned_cols=19 Identities=16% Similarity=0.218 Sum_probs=15.8
Q ss_pred CeeEEEecccCCCCccccc
Q 002982 141 NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (861)
...++-||++|+|||+.+.
T Consensus 43 ~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred CeEEEeeCcCCCCHHHHHH
Confidence 4566779999999999875
No 209
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=58.17 E-value=9.2 Score=41.98 Aligned_cols=17 Identities=41% Similarity=0.444 Sum_probs=14.6
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.|+-.|+||+|||+|+.
T Consensus 196 vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLA 212 (282)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56667999999999986
No 210
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=57.69 E-value=6.6 Score=41.58 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=14.6
Q ss_pred CCeeEEEecccCCCCccccc
Q 002982 140 INGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM~ 159 (861)
.+-.+++.|+.||||||.-.
T Consensus 18 ~~~~v~~~G~AGTGKT~LA~ 37 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLAL 37 (205)
T ss_dssp H-SEEEEE--TTSSTTHHHH
T ss_pred hCCeEEEECCCCCcHHHHHH
Confidence 45689999999999999764
No 211
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=57.50 E-value=3.4 Score=51.03 Aligned_cols=62 Identities=27% Similarity=0.367 Sum_probs=0.0
Q ss_pred cccchhhHHHHHH---HHHHhhhhhhhhhhHHHHhHHHHhcCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 002982 513 SIKTIDQIDLLRE---QQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIAD 584 (861)
Q Consensus 513 ~~~~~d~~dllre---q~k~l~geva~~~s~lkrl~e~a~~~p~~~~~~~~~~~l~~ei~~k~~qi~~le~~i~~ 584 (861)
....=|+||.||+ ++.-|..+|.-.--=|.=+ ..++-+|+.|++....--+++..||..+..
T Consensus 293 a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~----------~~lk~qvk~Lee~N~~l~e~~~~LEeel~~ 357 (713)
T PF05622_consen 293 ARALRDELDELREKADRADKLENEVEKYKKKLEDL----------EDLKRQVKELEEDNAVLLETKAMLEEELKK 357 (713)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456789999987 6666666665443222111 223345566666666666666666665543
No 212
>PHA00729 NTP-binding motif containing protein
Probab=57.08 E-value=8.1 Score=41.56 Aligned_cols=32 Identities=25% Similarity=0.223 Sum_probs=23.0
Q ss_pred HHHHHHHhhcCCCeeEEEecccCCCCcccccc
Q 002982 129 AQHVVSGAMDGINGTIFAYGVTSSGKTHTMHT 160 (861)
Q Consensus 129 ~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~g 160 (861)
++-++..+..|--..|+.+|.+|+||||....
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~a 36 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYALK 36 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHHHHHH
Confidence 45566666543335799999999999988753
No 213
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=57.05 E-value=3.8 Score=38.22 Aligned_cols=16 Identities=31% Similarity=0.578 Sum_probs=14.4
Q ss_pred EEEecccCCCCccccc
Q 002982 144 IFAYGVTSSGKTHTMH 159 (861)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (861)
|+-||++|.|||+.+.
T Consensus 1 I~i~G~~G~GKS~l~~ 16 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAK 16 (107)
T ss_pred CEEECCCCCCHHHHHH
Confidence 5789999999999986
No 214
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=56.98 E-value=11 Score=43.33 Aligned_cols=91 Identities=18% Similarity=0.308 Sum_probs=52.9
Q ss_pred CCeEEEEecCCCChhh-hccCCeEEEecCCCEEEeCCCCC------------ceeEeeceecCCCCcchhHHHHHHHHHH
Q 002982 67 ENVTVTVRFRPLSPRE-IRQGEEIAWYADGETILRNEDNP------------SIAYAYDRVFGPTTTTRHVYDIAAQHVV 133 (861)
Q Consensus 67 ~~VkV~VRVRPl~~~E-~~~g~~~~~~~d~~~iv~~~~~~------------~~~F~FD~VF~~~atQeeVY~~~~~plV 133 (861)
..-+.+|++.++-.++ +..|..+.+..+...|+..-+.. .-.-+|+-|=+-+..-++|.+.+--|+.
T Consensus 93 ~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~ 172 (406)
T COG1222 93 TGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLK 172 (406)
T ss_pred CCCeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHHhccccc
Confidence 3456778888876554 55677777666665554321110 0123344443433344667777767766
Q ss_pred H-Hhhc--CCC--eeEEEecccCCCCccc
Q 002982 134 S-GAMD--GIN--GTIFAYGVTSSGKTHT 157 (861)
Q Consensus 134 ~-~vl~--GyN--~tIfAYGqTGSGKTyT 157 (861)
+ ..|+ |.. -.|+-||++|+|||-.
T Consensus 173 ~PElF~~~GI~PPKGVLLYGPPGTGKTLL 201 (406)
T COG1222 173 NPELFEELGIDPPKGVLLYGPPGTGKTLL 201 (406)
T ss_pred CHHHHHHcCCCCCCceEeeCCCCCcHHHH
Confidence 5 2332 443 3589999999999754
No 215
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=56.79 E-value=35 Score=42.43 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=18.9
Q ss_pred HHHHhhHHHHHHHhhhhhhHHHH
Q 002982 728 VELKALSEEVAKLMNHKERLTAE 750 (861)
Q Consensus 728 velk~l~eevtkl~~qn~~l~~e 750 (861)
-|+..|-.+|..+-.-|.||-.=
T Consensus 606 ~e~~~l~~~~~~~ekr~~RLkev 628 (722)
T PF05557_consen 606 KEIAELKAELASAEKRNQRLKEV 628 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888999999999999998543
No 216
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=56.74 E-value=7.3 Score=39.40 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=17.3
Q ss_pred HHhhcCCCeeEEEecccCCCCcccc
Q 002982 134 SGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
+.++.|.| ++..++||+|||.+.
T Consensus 31 ~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 31 PPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHhcCCc--EEEECCCCCcHHHHH
Confidence 34455776 577899999999874
No 217
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=56.65 E-value=4.4 Score=38.54 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=14.3
Q ss_pred EEEecccCCCCccccc
Q 002982 144 IFAYGVTSSGKTHTMH 159 (861)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (861)
|+.+|.+|||||+...
T Consensus 2 ii~~G~pgsGKSt~a~ 17 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAK 17 (143)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7889999999999875
No 218
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=56.49 E-value=2.4e+02 Score=28.85 Aligned_cols=77 Identities=26% Similarity=0.274 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccCcccccccccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHHHHH
Q 002982 559 VEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDA 637 (861)
Q Consensus 559 ~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~ik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~ 637 (861)
.+|.++.-...-.+.|++.++.++..-=+.+ +..-.+|.-|++ .+|.-+.+++.+++.|...|+.++..-=|.|++.
T Consensus 6 ~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lg-e~L~~iDFeqLk-ien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~ 82 (177)
T PF13870_consen 6 NEISKLRLKNITLKHQLAKLEEQLRQKEELG-EGLHLIDFEQLK-IENQQLNEKIEERNKELLKLKKKIGKTVQILTHV 82 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777788888888888876544443 334567777774 7899999999999999999998888777777664
No 219
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=56.31 E-value=84 Score=39.18 Aligned_cols=78 Identities=22% Similarity=0.218 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccCcccccccccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHHHH
Q 002982 557 LQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLND 636 (861)
Q Consensus 557 ~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~ik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~ 636 (861)
++.++..|+.|+...+.++..||.+|...--....+..++-+ +--.||...+.+- .|..+...||.+...|+.+|..
T Consensus 508 L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trV--L~lr~NP~~~~~~-~k~~~l~~L~~En~~L~~~l~~ 584 (722)
T PF05557_consen 508 LQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRV--LHLRDNPTSKAEQ-IKKSTLEALQAENEDLLARLRS 584 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEE--EEESS-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcee--eeeCCCcHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 677999999999999999999999997532111111122222 4446898888884 4678999999999999999865
Q ss_pred H
Q 002982 637 A 637 (861)
Q Consensus 637 ~ 637 (861)
.
T Consensus 585 l 585 (722)
T PF05557_consen 585 L 585 (722)
T ss_dssp H
T ss_pred c
Confidence 4
No 220
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=56.16 E-value=3.3e+02 Score=32.75 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=14.7
Q ss_pred hhHHHHHHHhhhhhhHHHHH
Q 002982 732 ALSEEVAKLMNHKERLTAEL 751 (861)
Q Consensus 732 ~l~eevtkl~~qn~~l~~el 751 (861)
.|.+||..|+.+|.+++.|-
T Consensus 169 ~L~~qi~~L~~~n~~i~~ea 188 (475)
T PRK10361 169 TLAHEIRNLQQLNAQMAQEA 188 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46777777777888877773
No 221
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=56.15 E-value=4.1 Score=41.82 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=13.3
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
-++.+|.||||||++|.
T Consensus 40 h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR 56 (205)
T ss_dssp SEEEE--TTSSHHHHHH
T ss_pred eEEEEcCCCCCccHHHH
Confidence 57889999999999986
No 222
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=56.12 E-value=1.7e+02 Score=32.17 Aligned_cols=99 Identities=23% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhc-ccCccCcccccccccchhh--------------------------
Q 002982 555 EQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMT-SHNTMDNSEVSQVKAADNR-------------------------- 607 (861)
Q Consensus 555 ~~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~-s~~~~~~~~~~~ik~adnr-------------------------- 607 (861)
++.+.++..++.++.+.+.-|+.||.-+...-.. +......-.++.+-.+...
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siL 81 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSIL 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHH
Q ss_pred -hHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhhhhccccccccchhhhhhhhhhhhhHHHHHHHH
Q 002982 608 -IIQEQLNQKICECEGLQETIGFLKQQLNDALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDINEDSRLQVQAA 686 (861)
Q Consensus 608 -ilqeql~~k~~e~~elqe~v~~l~qql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 686 (861)
||.-|=.-=-.-|.||.+++..++++++.+ ..
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L-----------------------------------------------~~ 114 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSL-----------------------------------------------RR 114 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------HH
Q ss_pred HHHHHHHHhhHHhH
Q 002982 687 EIEELNRKVTELTE 700 (861)
Q Consensus 687 e~e~lk~~~~~l~e 700 (861)
||+.||.+..+|-|
T Consensus 115 Ev~~L~~DN~kLYE 128 (248)
T PF08172_consen 115 EVESLRADNVKLYE 128 (248)
T ss_pred HHHHHHHHHHHHHH
No 223
>PTZ00424 helicase 45; Provisional
Probab=55.65 E-value=6.5 Score=44.30 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=19.2
Q ss_pred HHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 132 VVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.+..+++|.|. +..++||||||.+..
T Consensus 58 ai~~i~~~~d~--ii~apTGsGKT~~~~ 83 (401)
T PTZ00424 58 GIKPILDGYDT--IGQAQSGTGKTATFV 83 (401)
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHHH
Confidence 34456788885 467899999998753
No 224
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=55.65 E-value=5 Score=46.28 Aligned_cols=71 Identities=20% Similarity=0.277 Sum_probs=42.8
Q ss_pred eeEEEecccCCCCccccc---cCCccceeeEEEEEEeccee--eeccCCCCCCceeeeCCCCeEEcccEEEEecCHHHHH
Q 002982 142 GTIFAYGVTSSGKTHTMH---TPNREFLLRVSYLEIYNEVV--NDLLNPAGQNLRIREDSQGTFVEGVKEEVVLSPAHAL 216 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~---g~~~~f~V~vSylEIYnE~I--~DLL~p~~~~L~Ired~~G~~V~gLse~~V~S~ee~~ 216 (861)
..|+-||.+||||||++. .....-.|++.++|-|.=.+ .-+|+... .-|..|..+++. ..++.++.
T Consensus 31 S~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~-----~~d~dg~~~~~~----~en~~d~i 101 (438)
T KOG2543|consen 31 SIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQ-----LADKDGDKVEGD----AENFSDFI 101 (438)
T ss_pred eeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhc-----cCCCchhhhhhH----HHHHHHHH
Confidence 346899999999999985 33344568899888885322 12222111 233445444432 45666777
Q ss_pred HHHHH
Q 002982 217 SLIAA 221 (861)
Q Consensus 217 ~lL~~ 221 (861)
.++..
T Consensus 102 ~~l~q 106 (438)
T KOG2543|consen 102 YLLVQ 106 (438)
T ss_pred HHHHh
Confidence 77655
No 225
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=55.37 E-value=49 Score=35.18 Aligned_cols=69 Identities=26% Similarity=0.345 Sum_probs=49.1
Q ss_pred hhHHHHHHhhcCCCcccccccccCCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh
Q 002982 745 ERLTAELAAAKSSPTQRRTSAVRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESKK 824 (861)
Q Consensus 745 ~~l~~el~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~el~~~~~re~~le~~l~ek~~~e~el~~~~ee~k~ 824 (861)
.+|+.||.+.|. +++..+...++.+. .+...|+..|..+-+|=.+||+-++.=+|+ =+||+.-
T Consensus 31 ~~lE~EL~~lr~--qq~~~~~~~~~~~~---------~~~~~L~~~LrEkEErILaLEad~~kWEqk------YLEEs~m 93 (205)
T PF12240_consen 31 TRLERELESLRA--QQRQGNSSGSSSPS---------NNASNLKELLREKEERILALEADMTKWEQK------YLEESAM 93 (205)
T ss_pred HHHHHHHHHHHH--hhccCCCCCCCCCC---------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 578999988883 44433322222221 578899999999999999999988765542 3888888
Q ss_pred hHHHHH
Q 002982 825 REAYLE 830 (861)
Q Consensus 825 ~e~~le 830 (861)
|+..++
T Consensus 94 rq~a~d 99 (205)
T PF12240_consen 94 RQFAMD 99 (205)
T ss_pred HHHHHH
Confidence 887653
No 226
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=54.59 E-value=32 Score=33.14 Aligned_cols=30 Identities=37% Similarity=0.521 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhHHhHhhhhhhhhhchhhh
Q 002982 685 AAEIEELNRKVTELTEAKEQLELRNQKLSE 714 (861)
Q Consensus 685 ~~e~e~lk~~~~~l~e~k~~l~~~n~kl~e 714 (861)
-.||+.|||-+..|.|||.-|.+.|.||-+
T Consensus 21 ~~el~~lK~~l~~lvEEN~~L~lENe~LR~ 50 (114)
T COG4467 21 LAELGGLKQHLGSLVEENTALRLENEKLRE 50 (114)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhHHHHHH
Confidence 568999999999999999999999999865
No 227
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=54.58 E-value=7.3 Score=45.24 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=18.5
Q ss_pred HHHhhcCCCeeEEEecccCCCCcccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
+..+++|.| +++.++||||||.+.
T Consensus 35 i~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 35 LPAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHHhcCCC--EEEECCCCCcHHHHH
Confidence 334567877 677889999999764
No 228
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=54.49 E-value=5e+02 Score=32.04 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=13.9
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
+++-||+.|+|||..|.
T Consensus 30 ~~~i~G~Ng~GKttll~ 46 (650)
T TIGR03185 30 IILIGGLNGAGKTTLLD 46 (650)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 55678999999998774
No 229
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=54.46 E-value=1.9e+02 Score=38.11 Aligned_cols=66 Identities=20% Similarity=0.130 Sum_probs=37.1
Q ss_pred hHHHHHHHhhhhhhHHHHHHhhcCCCcccccccccCCcccccccccCCCCChHH-----HHHHHHHHHHHHHHHHHHHhh
Q 002982 733 LSEEVAKLMNHKERLTAELAAAKSSPTQRRTSAVRNGRRDGQIKRQNQDGSSLD-----LKRELALSREREVSYEAALLE 807 (861)
Q Consensus 733 l~eevtkl~~qn~~l~~el~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-----~~~el~~~~~re~~le~~l~e 807 (861)
|--|..-|..||.-|..|+.+..+.. +... ++.+++.-.++-..|..++.+
T Consensus 178 lqae~~~l~~~~~~l~~~l~s~~~~~------------------------~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~ 233 (1109)
T PRK10929 178 LQAESAALKALVDELELAQLSANNRQ------------------------ELARLRSELAKKRSQQLDAYLQALRNQLNS 233 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666677777777776433211 2222 333344344444677777777
Q ss_pred HHHHHHHHHHHHHHhhh
Q 002982 808 KDQQEAELQRKVEESKK 824 (861)
Q Consensus 808 k~~~e~el~~~~ee~k~ 824 (861)
|.+.|+|. .++++.+
T Consensus 234 kR~~~se~--~~~~~~~ 248 (1109)
T PRK10929 234 QRQREAER--ALESTEL 248 (1109)
T ss_pred HHHHHHHH--HHHHHHH
Confidence 77777665 5555554
No 230
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=54.42 E-value=7.4 Score=43.96 Aligned_cols=29 Identities=28% Similarity=0.263 Sum_probs=20.1
Q ss_pred HHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 130 QHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 130 ~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
..++..++.+. ..|+..|.||||||.+|.
T Consensus 150 ~~~L~~~v~~~-~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 150 KEFLEHAVISK-KNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHHHHcC-CcEEEECCCCCCHHHHHH
Confidence 34444444433 457778999999999984
No 231
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=54.37 E-value=7.5 Score=42.30 Aligned_cols=40 Identities=23% Similarity=0.241 Sum_probs=23.7
Q ss_pred CcchhHHHHHHHHHHHHhhc--CCCeeEEEecccCCCCccccc
Q 002982 119 TTTRHVYDIAAQHVVSGAMD--GINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 119 atQeeVY~~~~~plV~~vl~--GyN~tIfAYGqTGSGKTyTM~ 159 (861)
..|+++.+.+ ..++..... +....++-||++|+|||+...
T Consensus 7 iG~~~~~~~l-~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 7 IGQEKVKEQL-QLFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred cCHHHHHHHH-HHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 4456665542 333332221 222346779999999999885
No 232
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=54.27 E-value=4.8 Score=38.50 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=14.5
Q ss_pred EEEecccCCCCccccc
Q 002982 144 IFAYGVTSSGKTHTMH 159 (861)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (861)
|+-+|++|+|||+.+.
T Consensus 2 vlL~G~~G~GKt~l~~ 17 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLAR 17 (139)
T ss_dssp EEEEESSSSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999999886
No 233
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=54.08 E-value=7 Score=47.66 Aligned_cols=43 Identities=19% Similarity=0.353 Sum_probs=30.4
Q ss_pred EeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.+||.+++. ..... .++..+..++...|+-||++|+|||+...
T Consensus 151 ~~~~~iiGq----s~~~~----~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr 193 (615)
T TIGR02903 151 RAFSEIVGQ----ERAIK----ALLAKVASPFPQHIILYGPPGVGKTTAAR 193 (615)
T ss_pred CcHHhceeC----cHHHH----HHHHHHhcCCCCeEEEECCCCCCHHHHHH
Confidence 577777754 33333 24455566788889999999999998763
No 234
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=53.98 E-value=62 Score=36.85 Aligned_cols=55 Identities=22% Similarity=0.257 Sum_probs=50.7
Q ss_pred hhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhc
Q 002982 701 AKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAK 755 (861)
Q Consensus 701 ~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~~~~ 755 (861)
+-++|..+||||.++-..+.++=+-+.-+...|-+=|.+|-.+|.+|...|.+..
T Consensus 100 e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~ 154 (401)
T PF06785_consen 100 ESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQ 154 (401)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4568999999999999999999999999999999999999999999999998876
No 235
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=53.79 E-value=7.6 Score=44.22 Aligned_cols=28 Identities=29% Similarity=0.280 Sum_probs=20.9
Q ss_pred HHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 131 HVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 131 plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.++..++.+. +.|+-.|.||||||.++-
T Consensus 164 ~~L~~av~~r-~NILisGGTGSGKTTlLN 191 (355)
T COG4962 164 KFLRRAVGIR-CNILISGGTGSGKTTLLN 191 (355)
T ss_pred HHHHHHHhhc-eeEEEeCCCCCCHHHHHH
Confidence 3444455555 778889999999999873
No 236
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=53.54 E-value=6.3e+02 Score=33.33 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=26.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 002982 783 SSLDLKRELALSREREVSYEAALLEKDQQEA 813 (861)
Q Consensus 783 ~~~~~~~el~~~~~re~~le~~l~ek~~~e~ 813 (861)
+++++..|+.--+++|.+++..+.+-+.+|.
T Consensus 815 ~v~~~~~~~~~~~~~e~~~~k~i~e~~~~e~ 845 (1141)
T KOG0018|consen 815 SVEDLEKEIEGLKKDEEAAEKIIAEIEELEK 845 (1141)
T ss_pred HHHHHHHhHHhhHHHHHHHHHHHhhHHHHHH
Confidence 7889999999999999999999998866655
No 237
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=53.44 E-value=87 Score=37.55 Aligned_cols=33 Identities=36% Similarity=0.214 Sum_probs=30.5
Q ss_pred hhHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHh
Q 002982 607 RIIQEQLNQKICECEGLQETIGFLKQQLNDALE 639 (861)
Q Consensus 607 rilqeql~~k~~e~~elqe~v~~l~qql~~~~~ 639 (861)
|++||-|++|+.|+.-+||.+.+|--||-++-+
T Consensus 215 ~s~~eel~~kt~el~~q~Ee~skLlsql~d~qk 247 (596)
T KOG4360|consen 215 RSGQEELQSKTKELSRQQEENSKLLSQLVDLQK 247 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 899999999999999999999999999988644
No 238
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=53.33 E-value=76 Score=37.67 Aligned_cols=74 Identities=23% Similarity=0.356 Sum_probs=42.6
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhH
Q 002982 668 EIALLKDINEDSRLQVQAAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERL 747 (861)
Q Consensus 668 ~~~~~~~~~~~~~~~~q~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l 747 (861)
.+...++.++..+. +|-+|||+|..|...|. |..++.=|. |.++--.+-++|-.++. -||+.-.++
T Consensus 516 ~~~~~ke~~e~e~~-a~~~E~eklE~el~~ln-----L~s~ts~l~-----~eq~vqs~~i~ld~~~~---~~n~~r~~i 581 (622)
T COG5185 516 KFELSKEENERELV-AQRIEIEKLEKELNDLN-----LLSKTSILD-----AEQLVQSTEIKLDELKV---DLNRKRYKI 581 (622)
T ss_pred HHHHHHHhhHHHHH-HHHHHHHHHHHHHHHhh-----hhccchHhh-----HHHHHHHHHhhHHHHHH---HHHHHHHHH
Confidence 34456666666554 46899999988877663 334433332 23344445555554442 356666667
Q ss_pred HHHHHhhc
Q 002982 748 TAELAAAK 755 (861)
Q Consensus 748 ~~el~~~~ 755 (861)
-++++-.-
T Consensus 582 ~k~V~~v~ 589 (622)
T COG5185 582 HKQVIHVI 589 (622)
T ss_pred HHHHHHHH
Confidence 77766443
No 239
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=53.27 E-value=6.4 Score=40.54 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=15.4
Q ss_pred CCeeEEEecccCCCCccccc
Q 002982 140 INGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM~ 159 (861)
....||..|++|||||+.+.
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~ 33 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLAR 33 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHH
Confidence 34678899999999999875
No 240
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=53.22 E-value=5.6 Score=45.18 Aligned_cols=28 Identities=25% Similarity=0.214 Sum_probs=19.4
Q ss_pred HHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 131 HVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 131 plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.++..++. ..+.|+..|+||||||.+|.
T Consensus 153 ~~l~~~v~-~~~nilI~G~tGSGKTTll~ 180 (344)
T PRK13851 153 AFLHACVV-GRLTMLLCGPTGSGKTTMSK 180 (344)
T ss_pred HHHHHHHH-cCCeEEEECCCCccHHHHHH
Confidence 34444443 23457778999999999985
No 241
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=53.06 E-value=1.2e+02 Score=29.66 Aligned_cols=97 Identities=24% Similarity=0.366 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHhhhhhhhhhhHHHHhHHHHhcCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccCcccc
Q 002982 519 QIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEV 598 (861)
Q Consensus 519 ~~dllreq~k~l~geva~~~s~lkrl~e~a~~~p~~~~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~ 598 (861)
-|.-|.-+++-+-||++.-..-|.||.. .++--...| +.+-..+++.+....++..|++++.+-=..
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~--~r~~l~~Ei-v~l~~~~e~~~~~~~~~~~L~~el~~l~~r---------- 83 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEA--ERDELREEI-VKLMEENEELRALKKEVEELEQELEELQQR---------- 83 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 3677888999999999999999999843 333334444 334455666667777777777766533221
Q ss_pred cccccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHHH
Q 002982 599 SQVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLN 635 (861)
Q Consensus 599 ~~ik~adnrilqeql~~k~~e~~elqe~v~~l~qql~ 635 (861)
.-.+=+=|-+|.-+++||+--|..||.-.-
T Consensus 84 -------y~t~LellGEK~E~veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 84 -------YQTLLELLGEKSEEVEELRADVQDLKEMYR 113 (120)
T ss_pred -------HHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 112223355899999999999999987643
No 242
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=53.05 E-value=52 Score=28.54 Aligned_cols=38 Identities=21% Similarity=0.422 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccC
Q 002982 557 LQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMD 594 (861)
Q Consensus 557 ~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~ 594 (861)
+..++++|..+|.....+|..+++++.+..=.+.++.+
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~e 39 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEE 39 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHH
Confidence 45689999999999999999999999865554455533
No 243
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=52.83 E-value=7.2 Score=46.29 Aligned_cols=108 Identities=14% Similarity=0.232 Sum_probs=57.3
Q ss_pred eeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccc-----cC-CccceeeEEEEEEecceee-ec
Q 002982 110 AYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH-----TP-NREFLLRVSYLEIYNEVVN-DL 182 (861)
Q Consensus 110 ~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~-----g~-~~~f~V~vSylEIYnE~I~-DL 182 (861)
.|+.+.+....-..+++.+ .. +...+..|+-+|.+|+||++.-. .+ ...-.|.|.|-.+..+.+- .|
T Consensus 185 ~~~~iig~s~~~~~~~~~i-----~~-~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~l 258 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEI-----EV-VAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESEL 258 (509)
T ss_pred cCCceeecCHHHHHHHHHH-----HH-HhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHh
Confidence 6666666554444444433 22 45678899999999999998763 22 2222344444444332221 12
Q ss_pred cCCCC---------CCceeeeCCCC-eEEcccEEEEecCHHHHHHHHHHhH
Q 002982 183 LNPAG---------QNLRIREDSQG-TFVEGVKEEVVLSPAHALSLIAAGE 223 (861)
Q Consensus 183 L~p~~---------~~L~Ired~~G-~~V~gLse~~V~S~ee~~~lL~~G~ 223 (861)
+...+ ..-.+....+| .|+.++-..+..-...++.+|..+.
T Consensus 259 fG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~ 309 (509)
T PRK05022 259 FGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGE 309 (509)
T ss_pred cCccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCC
Confidence 22111 01112222345 5777777777665666666665543
No 244
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=52.64 E-value=3.5e+02 Score=35.43 Aligned_cols=111 Identities=24% Similarity=0.222 Sum_probs=71.6
Q ss_pred hHHhhhhhHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhhhhccccccccchhhhhhhhhh-hhhHHHHHHHHHHHHHHH
Q 002982 615 QKICECEGLQETIGFLKQQLNDALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDI-NEDSRLQVQAAEIEELNR 693 (861)
Q Consensus 615 ~k~~e~~elqe~v~~l~qql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~~e~e~lk~ 693 (861)
.|-.=..++=++|..||+.|..+=++.-. |+ +.+... ....+. .-..+++.++.|++++..
T Consensus 401 ~K~~llKd~~~EIerLK~dl~AaReKnGv-----yi---------see~y~----~~e~e~~~~~~~ieele~el~~~~~ 462 (1041)
T KOG0243|consen 401 MKKTLLKDLYEEIERLKRDLAAAREKNGV-----YI---------SEERYT----QEEKEKKEMAEQIEELEEELENLEK 462 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhCce-----Ee---------chHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55577889999999999999987765522 00 111100 001122 222356777888888888
Q ss_pred HhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhh
Q 002982 694 KVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNH 743 (861)
Q Consensus 694 ~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~q 743 (861)
.+..++|---.....++.|-++----|.==---..||..+.+|..++-.+
T Consensus 463 ~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 463 QLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887776666666666665444444445667888888888877655
No 245
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=52.50 E-value=9.5 Score=46.96 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 122 RHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 122 eeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
-.||..+-.-.-.-...|-|-||+-.|.+|||||+++.
T Consensus 66 PHif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~k 103 (689)
T PF00063_consen 66 PHIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETSK 103 (689)
T ss_dssp SSHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHHH
T ss_pred CccchhhhcccccccccccccceeeccccccccccchH
Confidence 46776443333333346899999999999999999963
No 246
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=52.27 E-value=79 Score=39.58 Aligned_cols=86 Identities=27% Similarity=0.427 Sum_probs=63.0
Q ss_pred CChHHHHHHHHHHHHHHHh-------------------------------HHHHHHHHHHHHHhhhhcccCccCcccccc
Q 002982 552 PQKEQLQVEIKKLRDEIKG-------------------------------KNDQIALLEKQIADSIMTSHNTMDNSEVSQ 600 (861)
Q Consensus 552 p~~~~~~~~~~~l~~ei~~-------------------------------k~~qi~~le~~i~~s~~~s~~~~~~~~~~~ 600 (861)
+-|..++.+|.+++.||.. .++.|..|+++|...++...+. +++..
T Consensus 597 ~~~~~lkeki~~~~~Ei~~eie~v~~S~gL~~~~~~k~e~a~~~~~p~~~~k~KIe~L~~eIkkkIe~av~s---s~LK~ 673 (762)
T PLN03229 597 ELDDDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDTAEQTPPPNLQEKIESLNEEINKKIERVIRS---SDLKS 673 (762)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhhhhcccccCCChhhHHHHHHHHHHHHHHHHHHhcc---hhHHH
Confidence 5667788899999998882 2889999999999999886643 33332
Q ss_pred ---------c---ccch----hhh--HHHHHHhHHhhh---hhHHHHHHHHHHHHHHHHhh
Q 002982 601 ---------V---KAAD----NRI--IQEQLNQKICEC---EGLQETIGFLKQQLNDALEL 640 (861)
Q Consensus 601 ---------i---k~ad----nri--lqeql~~k~~e~---~elqe~v~~l~qql~~~~~~ 640 (861)
. ++.| |+| |+.|..||+.|- .+|+|+-..|+..|..+.+.
T Consensus 674 k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~~~~~a~~~~~lkek~e~l~~e~~~~~~~ 734 (762)
T PLN03229 674 KIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEALNSSELKEKFEELEAELAAARET 734 (762)
T ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHhhcc
Confidence 0 1111 444 888899998775 47888888999998887664
No 247
>PRK13764 ATPase; Provisional
Probab=52.16 E-value=7.3 Score=47.46 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=16.9
Q ss_pred CCeeEEEecccCCCCccccc
Q 002982 140 INGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM~ 159 (861)
....|+..|+||||||+++.
T Consensus 256 ~~~~ILIsG~TGSGKTTll~ 275 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQ 275 (602)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 34558999999999999985
No 248
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=51.87 E-value=1.7e+02 Score=29.07 Aligned_cols=59 Identities=31% Similarity=0.395 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH----HHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHhh
Q 002982 786 DLKRELALSREREVSYEAALLEKDQ----QEAELQRKVEESKKREAYLENELANMWVLVAKLK 844 (861)
Q Consensus 786 ~~~~el~~~~~re~~le~~l~ek~~----~e~el~~~~ee~k~~e~~lenelanmwvlvaklk 844 (861)
++++|+.....++.+|+..+..-.. ...|++|-.--..++....++|+--.=.=+.|||
T Consensus 84 ~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk 146 (151)
T PF11559_consen 84 ELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLK 146 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555555555555555443221 1235555555555666666666655444445554
No 249
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=51.87 E-value=9 Score=45.90 Aligned_cols=31 Identities=19% Similarity=0.332 Sum_probs=23.3
Q ss_pred HHHHHHHhhcCCC--eeEEEecccCCCCccccc
Q 002982 129 AQHVVSGAMDGIN--GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 129 ~~plV~~vl~GyN--~tIfAYGqTGSGKTyTM~ 159 (861)
++..+...+.|.. ..++-+|++|+|||.|+.
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~ 63 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVK 63 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHHH
Confidence 4555666665553 567889999999999986
No 250
>PRK06547 hypothetical protein; Provisional
Probab=51.85 E-value=11 Score=38.38 Aligned_cols=29 Identities=24% Similarity=0.187 Sum_probs=19.8
Q ss_pred HHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 131 HVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 131 plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.++..+..+.---|.-+|.+|||||+.-.
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~ 33 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAG 33 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHH
Confidence 34445555555556667999999998764
No 251
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=51.77 E-value=5.8 Score=36.60 Aligned_cols=16 Identities=38% Similarity=0.414 Sum_probs=13.9
Q ss_pred EEEecccCCCCccccc
Q 002982 144 IFAYGVTSSGKTHTMH 159 (861)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (861)
|+-.|.+|||||+...
T Consensus 1 I~i~G~~GsGKtTia~ 16 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAK 16 (129)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred CEEECCCCCCHHHHHH
Confidence 6778999999998874
No 252
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=51.74 E-value=60 Score=32.92 Aligned_cols=64 Identities=28% Similarity=0.375 Sum_probs=49.6
Q ss_pred cccchhhHHHHHHHHHHhhhhhhhhhhHHHHhHHHHhcCCChHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002982 513 SIKTIDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEK 580 (861)
Q Consensus 513 ~~~~~d~~dllreq~k~l~geva~~~s~lkrl~e~a~~~p~~~~~~~~~~~l~~ei~~k~~qi~~le~ 580 (861)
...+-.++.-|++|+.-|..++.-=.+-|+-| ...|.++++..+|..|+.||......+..|..
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L----~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASL----SSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445578888999888888877666666666 57899999999999999988887777777664
No 253
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=51.64 E-value=6.5 Score=40.11 Aligned_cols=18 Identities=22% Similarity=0.326 Sum_probs=15.6
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
+.++-+|+||+|||++..
T Consensus 4 ~~~ll~GpsGvGKT~la~ 21 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAK 21 (171)
T ss_dssp EEEEEESSTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 568889999999999864
No 254
>PF14282 FlxA: FlxA-like protein
Probab=51.28 E-value=1.2e+02 Score=28.98 Aligned_cols=66 Identities=30% Similarity=0.328 Sum_probs=49.1
Q ss_pred ccchhhHHHHHHHHHHhhhhhhhhhhHHHHhHHHHhcCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhc
Q 002982 514 IKTIDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMT 588 (861)
Q Consensus 514 ~~~~d~~dllreq~k~l~geva~~~s~lkrl~e~a~~~p~~~~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~ 588 (861)
.....+|.-|.+|.+-|-.++. -|.+- .+.+.++-+.+++.|..+|.....||+.|..+...--..
T Consensus 15 ~~~~~~I~~L~~Qi~~Lq~ql~-------~l~~~--~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~ 80 (106)
T PF14282_consen 15 GSSDSQIEQLQKQIKQLQEQLQ-------ELSQD--SDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQQ 80 (106)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-------HHHcc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3347889999999999987643 33221 344556667889999999999999999998888765433
No 255
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=51.20 E-value=5.1e+02 Score=34.08 Aligned_cols=163 Identities=20% Similarity=0.302 Sum_probs=91.0
Q ss_pred CCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccCcccccccccchhhhHHHHHHhHHhhhhhHHHHHHHH
Q 002982 551 NPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQVKAADNRIIQEQLNQKICECEGLQETIGFL 630 (861)
Q Consensus 551 ~p~~~~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~ik~adnrilqeql~~k~~e~~elqe~v~~l 630 (861)
-|.-..|+..|.+.+.++++.+.+|..+|-+|-..+-. .+.+. |+.-+|+-+|++--.| -.|++-.++.|
T Consensus 724 ~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~------~igv~-ir~Yee~~~~~~~a~k---~~ef~~q~~~l 793 (1141)
T KOG0018|consen 724 GPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCR------RIGVR-IREYEERELQQEFAKK---RLEFENQKAKL 793 (1141)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hcCee-eehHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 35555677777777777777777777777777766555 34455 8888888885544443 34555566666
Q ss_pred HHHHHHHHhhcCCCCcchhhhhhhhhccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhH----HhHhhhhhh
Q 002982 631 KQQLNDALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDINEDSRLQVQAAEIEELNRKVTE----LTEAKEQLE 706 (861)
Q Consensus 631 ~qql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~e~e~lk~~~~~----l~e~k~~l~ 706 (861)
+-||.=.-. .+ ....+++-.. .+..-+.||+.||++... +.|- +.|+
T Consensus 794 ~~~l~fe~~-----------------~d--~~~~ve~~~~---------~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e 844 (1141)
T KOG0018|consen 794 ENQLDFEKQ-----------------KD--TQRRVERWER---------SVEDLEKEIEGLKKDEEAAEKIIAEI-EELE 844 (1141)
T ss_pred hhhhhheec-----------------cc--HHHHHHHHHH---------HHHHHHHhHHhhHHHHHHHHHHHhhH-HHHH
Confidence 666522100 00 0000000000 111123344444433211 1112 3333
Q ss_pred hhh----chhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHH
Q 002982 707 LRN----QKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELA 752 (861)
Q Consensus 707 ~~n----~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~ 752 (861)
.+| .|...|..=+|..+.-|.-||-.|..|++-+--+=+++..|--
T Consensus 845 ~k~k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~ 894 (1141)
T KOG0018|consen 845 KKNKSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESERH 894 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 333 3556677778888888888888888888877777777766643
No 256
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=50.86 E-value=43 Score=40.81 Aligned_cols=84 Identities=30% Similarity=0.373 Sum_probs=55.4
Q ss_pred HHHhhHHHHHHHhhhhhhHHHHHHhhcCCCcccccccccCCcccccccccCCCCChHHHHHHHHHHHHHHH---HHHHHH
Q 002982 729 ELKALSEEVAKLMNHKERLTAELAAAKSSPTQRRTSAVRNGRRDGQIKRQNQDGSSLDLKRELALSREREV---SYEAAL 805 (861)
Q Consensus 729 elk~l~eevtkl~~qn~~l~~el~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~el~~~~~re~---~le~~l 805 (861)
++++|-+-|++|--+|.-|..++...+. -++.|+.+|..-+.+.. -..--+
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~--------------------------eie~L~~~l~~~~r~~~~~~~~~rei 476 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKR--------------------------EIEKLESELERFRREVRDKVRKDREI 476 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 5678888888888888888888876651 34444444443333221 111112
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHhhhh---hHHH
Q 002982 806 LEKDQQEAELQRKVEESKKREAYLENELA---NMWV 838 (861)
Q Consensus 806 ~ek~~~e~el~~~~ee~k~~e~~lenela---nmwv 838 (861)
-.+|.+=+.|.++++|.|.+=..||++|+ -||.
T Consensus 477 ~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~ 512 (652)
T COG2433 477 RARDRRIERLEKELEEKKKRVEELERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23566667899999999999999998886 4565
No 257
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=50.64 E-value=13 Score=40.75 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 126 DIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 126 ~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
-..+.||+ ..+.--+..|-.||+|++|||.++.
T Consensus 179 ~afa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~~ 211 (286)
T PF06048_consen 179 AAFAAPLL-SLLGVEGFGFHLYGQSSSGKTTALQ 211 (286)
T ss_pred HHHHHHHH-HHhCCCceEEEEEeCCCCCHHHHHH
Confidence 44456666 4566667788899999999999885
No 258
>PRK10536 hypothetical protein; Provisional
Probab=50.42 E-value=8.1 Score=42.45 Aligned_cols=42 Identities=19% Similarity=0.239 Sum_probs=27.9
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.|.|..|-+-+..|..... .+.+ +..|+..|++||||||...
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~--------al~~--~~lV~i~G~aGTGKT~La~ 92 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLK--------AIES--KQLIFATGEAGCGKTWISA 92 (262)
T ss_pred hcCCccccCCCHHHHHHHH--------HHhc--CCeEEEECCCCCCHHHHHH
Confidence 3566666665555555443 2223 3589999999999999874
No 259
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.35 E-value=75 Score=38.40 Aligned_cols=130 Identities=30% Similarity=0.334 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcCCCccccc-
Q 002982 685 AAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKSSPTQRRT- 763 (861)
Q Consensus 685 ~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~~~~~~~~~~~~- 763 (861)
..+.+.|++++.+|+++ .++.+.+|-=|+-++.+ |-||---|-.|=+.|.+|+..+|.---+-+-
T Consensus 7 eq~ve~lr~eierLT~e-----------l~q~t~e~~qaAeyGL~---lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkea 72 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEE-----------LEQTTEEKIQAAEYGLE---LLEEKEDLKQQLEELEAEYDLARTELDQTKEA 72 (772)
T ss_pred hhhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -----ccccCCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHhhhhHHHHHh---
Q 002982 764 -----SAVRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSYEAALLEKDQQEAELQRKV----EESKKREAYLEN--- 831 (861)
Q Consensus 764 -----~~~~~~r~~~~~~~~~~~~~~~~~~~el~~~~~re~~le~~l~ek~~~e~el~~~~----ee~k~~e~~len--- 831 (861)
+.-+..-+++..+ =|+.|-|-..+|++|..|| -|-||.++.|+|
T Consensus 73 l~q~~s~hkk~~~~g~e~------------------------EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~ 128 (772)
T KOG0999|consen 73 LGQYRSQHKKVARDGEER------------------------EESLLQESAAKEEYYLQKILELENELKQLRQELTNVQE 128 (772)
T ss_pred HHHHHHHHHHhhccchhh------------------------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHHHHHHHhhhcCCCCCC
Q 002982 832 ELANMWVLVAKLKKSHGADTD 852 (861)
Q Consensus 832 elanmwvlvaklkk~~~~~~~ 852 (861)
|+..|--.+.++|.++.+.++
T Consensus 129 E~erl~~~~sd~~e~~~~~E~ 149 (772)
T KOG0999|consen 129 ENERLEKVHSDLKESNAAVED 149 (772)
T ss_pred HHHHHHHHHHHhhhcchhhHH
No 260
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=50.33 E-value=6.7 Score=46.31 Aligned_cols=51 Identities=14% Similarity=0.237 Sum_probs=30.3
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHH-Hhh----cCCCeeEEEecccCCCCccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVS-GAM----DGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~-~vl----~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
..+||.|.+.+...+.+.+ ++..+-. ..+ ......|+-||++|+|||+...
T Consensus 51 ~~~~~di~g~~~~k~~l~~-~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELME-IVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CCCHHHhCCHHHHHHHHHH-HHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHH
Confidence 4688888876555444443 2222111 011 1223358889999999999985
No 261
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=50.12 E-value=9.4 Score=43.88 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=19.1
Q ss_pred HHHhhcCCCeeEEEecccCCCCcccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
|..+++|-| +++.++||||||.+.
T Consensus 32 i~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 32 IPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 445667876 788899999999874
No 262
>PRK13342 recombination factor protein RarA; Reviewed
Probab=49.39 E-value=8.6 Score=44.34 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=18.0
Q ss_pred hcCCCeeEEEecccCCCCccccc
Q 002982 137 MDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 137 l~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
-.+.-..++-||++|+|||+...
T Consensus 32 ~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 32 EAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred HcCCCceEEEECCCCCCHHHHHH
Confidence 34555567779999999998875
No 263
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=48.84 E-value=8.4 Score=41.41 Aligned_cols=19 Identities=21% Similarity=0.186 Sum_probs=15.7
Q ss_pred CeeEEEecccCCCCccccc
Q 002982 141 NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (861)
...|+-||++|+|||++..
T Consensus 42 ~~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred cceEEEEcCCCCCHHHHHH
Confidence 3457789999999999874
No 264
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=48.78 E-value=14 Score=42.95 Aligned_cols=85 Identities=25% Similarity=0.358 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHHHhhcCC----CeeEEEecccCCCCccccccCCccceeeEEEEEEecceeeeccCCCCCCceeeeCCC
Q 002982 122 RHVYDIAAQHVVSGAMDGI----NGTIFAYGVTSSGKTHTMHTPNREFLLRVSYLEIYNEVVNDLLNPAGQNLRIREDSQ 197 (861)
Q Consensus 122 eeVY~~~~~plV~~vl~Gy----N~tIfAYGqTGSGKTyTM~g~~~~f~V~vSylEIYnE~I~DLL~p~~~~L~Ired~~ 197 (861)
...|.....-++.++.+-. .+-|.-.||||.|||.|+-.-...|. ++.....---|.-|.-
T Consensus 180 ~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~---------------~~~~~~kVaiITtDtY 244 (407)
T COG1419 180 LRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYV---------------MLKKKKKVAIITTDTY 244 (407)
T ss_pred hhhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHH---------------hhccCcceEEEEeccc
Confidence 3444444444444444442 56667789999999999953333332 1111111111111221
Q ss_pred --C------eE--EcccEEEEecCHHHHHHHHHH
Q 002982 198 --G------TF--VEGVKEEVVLSPAHALSLIAA 221 (861)
Q Consensus 198 --G------~~--V~gLse~~V~S~ee~~~lL~~ 221 (861)
| .| +-|+.-..|.++.|+...+..
T Consensus 245 RIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~ 278 (407)
T COG1419 245 RIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEA 278 (407)
T ss_pred hhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHH
Confidence 1 11 557777889999999888754
No 265
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=48.74 E-value=2.9e+02 Score=34.25 Aligned_cols=68 Identities=19% Similarity=0.175 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHH--HHHHhhHHHHHHHhhhhhhHHHHHHh
Q 002982 686 AEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAA--VELKALSEEVAKLMNHKERLTAELAA 753 (861)
Q Consensus 686 ~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaa--velk~l~eevtkl~~qn~~l~~el~~ 753 (861)
.++..||-++.+.+..-..|+..-+||-....+...-.-.|. ..-.+|..|+..|..+-+.|...|.+
T Consensus 36 eev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqa 105 (617)
T PF15070_consen 36 EEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQA 105 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555444444333222222 22257777777777777777666654
No 266
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=48.63 E-value=7.7 Score=42.94 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=15.6
Q ss_pred CeeEEEecccCCCCccccc
Q 002982 141 NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (861)
--+|+-||++|+|||++--
T Consensus 151 PknVLFyGppGTGKTm~Ak 169 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAK 169 (368)
T ss_pred cceeEEECCCCccHHHHHH
Confidence 4568889999999998754
No 267
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=48.45 E-value=13 Score=40.19 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=17.1
Q ss_pred cCCCeeEEEecccCCCCccccc
Q 002982 138 DGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 138 ~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.|....++-||++|+|||+++.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~~ 56 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAAL 56 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 3444457889999999999874
No 268
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=48.42 E-value=8 Score=44.54 Aligned_cols=19 Identities=37% Similarity=0.424 Sum_probs=16.4
Q ss_pred CeeEEEecccCCCCccccc
Q 002982 141 NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (861)
...|+-+|+||+|||+|+.
T Consensus 137 g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4577789999999999985
No 269
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=48.37 E-value=7.6e+02 Score=33.52 Aligned_cols=94 Identities=19% Similarity=0.214 Sum_probs=58.8
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcCCCcccccccccCCcccccccccCCCCChHHHHHHHHHHHHHHHHHHH
Q 002982 724 SAAAVELKALSEEVAKLMNHKERLTAELAAAKSSPTQRRTSAVRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSYEA 803 (861)
Q Consensus 724 saaavelk~l~eevtkl~~qn~~l~~el~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~el~~~~~re~~le~ 803 (861)
..+.-++..+.++++.|..+=+.|.+++..++.++.-+. .....+++.++......-..-+.
T Consensus 293 ~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~------------------~~eL~el~~ql~~~~~~a~~~~~ 354 (1353)
T TIGR02680 293 ETAREEERELDARTEALEREADALRTRLEALQGSPAYQD------------------AEELERARADAEALQAAAADARQ 354 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777788888778888888888876552110 00223444444444444445555
Q ss_pred HHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhh
Q 002982 804 ALLEKDQQEAELQRKVEESKKREAYLENELAN 835 (861)
Q Consensus 804 ~l~ek~~~e~el~~~~ee~k~~e~~lenelan 835 (861)
.+.+|.....++++++++...|-..++-+|+.
T Consensus 355 ~~~~a~~~~e~~~~~~~~~~~r~~~~~~~l~~ 386 (1353)
T TIGR02680 355 AIREAESRLEEERRRLDEEAGRLDDAERELRA 386 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777788888888877777666666543
No 270
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=48.31 E-value=76 Score=28.19 Aligned_cols=64 Identities=31% Similarity=0.402 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhc
Q 002982 685 AAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAK 755 (861)
Q Consensus 685 ~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~~~~ 755 (861)
+++|..|.-+...++...+-.++.|..|.-|= ..|+--|-..-+|..+|..+|+.|.+||...+
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ER-------d~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRER-------DSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56777777777778877777788888777663 33444455567788888888999998887543
No 271
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=48.03 E-value=9.8 Score=37.56 Aligned_cols=15 Identities=27% Similarity=0.284 Sum_probs=12.0
Q ss_pred EEEecccCCCCcccc
Q 002982 144 IFAYGVTSSGKTHTM 158 (861)
Q Consensus 144 IfAYGqTGSGKTyTM 158 (861)
+--.|.||+||||+-
T Consensus 56 lSfHG~tGtGKn~v~ 70 (127)
T PF06309_consen 56 LSFHGWTGTGKNFVS 70 (127)
T ss_pred EEeecCCCCcHHHHH
Confidence 334699999999974
No 272
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=47.72 E-value=9.7 Score=46.32 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=55.9
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccc-----cC-CccceeeEEEEEEeccee-e
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH-----TP-NREFLLRVSYLEIYNEVV-N 180 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~-----g~-~~~f~V~vSylEIYnE~I-~ 180 (861)
.|+||.+.+.+..-..+.+ . +..+ ...+..|+-+|.+|+||++.-. .. ...-.|.|.|-.+..+.+ -
T Consensus 321 ~~~~~~l~g~s~~~~~~~~----~-~~~~-a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~ 394 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIH----F-GRQA-AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAE 394 (638)
T ss_pred cccccceEECCHHHHHHHH----H-HHHH-hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHH
Confidence 4678877755433223332 2 2222 3467789999999999988653 11 111223333322222221 1
Q ss_pred eccCCC------CCCceeeeCCCC-eEEcccEEEEecCHHHHHHHHHHhH
Q 002982 181 DLLNPA------GQNLRIREDSQG-TFVEGVKEEVVLSPAHALSLIAAGE 223 (861)
Q Consensus 181 DLL~p~------~~~L~Ired~~G-~~V~gLse~~V~S~ee~~~lL~~G~ 223 (861)
+|+... +..-.+....+| .|+.++-..+..-...++.+|+.+.
T Consensus 395 elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~ 444 (638)
T PRK11388 395 EFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGV 444 (638)
T ss_pred HhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCc
Confidence 233211 111123333455 5777777776666666777775553
No 273
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=47.70 E-value=11 Score=43.43 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=18.3
Q ss_pred HHHhhcCCCeeEEEecccCCCCcccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
+..++.|.| |++.++||||||.+.
T Consensus 39 ip~il~g~d--vi~~ApTGsGKTla~ 62 (423)
T PRK04837 39 LPLTLAGRD--VAGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHhCCCc--EEEECCCCchHHHHH
Confidence 345678877 566779999999875
No 274
>PLN03025 replication factor C subunit; Provisional
Probab=46.80 E-value=15 Score=40.73 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=14.6
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.++-||++|+|||++..
T Consensus 36 ~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 36 NLILSGPPGTGKTTSIL 52 (319)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 46669999999999986
No 275
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=46.01 E-value=79 Score=29.42 Aligned_cols=75 Identities=19% Similarity=0.292 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccCcccccc-----------cccchhhhHHHHHHhHHhhhhhHHHHHH
Q 002982 560 EIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQ-----------VKAADNRIIQEQLNQKICECEGLQETIG 628 (861)
Q Consensus 560 ~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~-----------ik~adnrilqeql~~k~~e~~elqe~v~ 628 (861)
..+.+..||...+.++..|+..+-+.....-+..+.-|+.+ |++.=+.+|.+|+..=-..-..|++.-.
T Consensus 13 ~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~ 92 (100)
T PF01486_consen 13 QHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENN 92 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888887776665555444445554 5555555555555443333444444444
Q ss_pred HHHHHH
Q 002982 629 FLKQQL 634 (861)
Q Consensus 629 ~l~qql 634 (861)
.|++++
T Consensus 93 ~L~~~~ 98 (100)
T PF01486_consen 93 QLRQKI 98 (100)
T ss_pred HHHHHh
Confidence 444443
No 276
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=45.99 E-value=13 Score=43.36 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=19.3
Q ss_pred HHHhhcCCCeeEEEecccCCCCccccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
|..+++|.| |++..+||||||.+..
T Consensus 32 i~~il~g~d--vlv~apTGsGKTla~~ 56 (456)
T PRK10590 32 IPAVLEGRD--LMASAQTGTGKTAGFT 56 (456)
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHHH
Confidence 445678887 6778899999998753
No 277
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=45.11 E-value=2.5e+02 Score=28.64 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=10.9
Q ss_pred HHHhhHHHHHHHhhhhhhHHHHHHh
Q 002982 729 ELKALSEEVAKLMNHKERLTAELAA 753 (861)
Q Consensus 729 elk~l~eevtkl~~qn~~l~~el~~ 753 (861)
+|..+.+....+..+......++.+
T Consensus 110 ~l~~~~~~~~~~~~~~~~~~~~l~~ 134 (191)
T PF04156_consen 110 ELEKLKEDLQELRELLKSVEERLDS 134 (191)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4444545544444333333333333
No 278
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=44.89 E-value=17 Score=44.78 Aligned_cols=31 Identities=29% Similarity=0.323 Sum_probs=21.1
Q ss_pred HHHHHHHHhhc-----CCCeeEEEecccCCCCccccc
Q 002982 128 AAQHVVSGAMD-----GINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 128 ~~~plV~~vl~-----GyN~tIfAYGqTGSGKTyTM~ 159 (861)
++..++..+.. |.+..|+. -.||||||+||.
T Consensus 246 av~~~~~~~~~~~~~~~~~~gli~-~~TGsGKT~t~~ 281 (667)
T TIGR00348 246 AVKKIVESITRKTWGKDERGGLIW-HTQGSGKTLTML 281 (667)
T ss_pred HHHHHHHHHHhcccCCCCceeEEE-EecCCCccHHHH
Confidence 34556666655 34455544 499999999996
No 279
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=44.85 E-value=1.5e+02 Score=30.83 Aligned_cols=115 Identities=26% Similarity=0.242 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcCCCccccc
Q 002982 684 QAAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKSSPTQRRT 763 (861)
Q Consensus 684 q~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~~~~~~~~~~~~ 763 (861)
...|..++.....++...=..+...+++|-.+. .+-...|..|..|++.|......|..+|..-..
T Consensus 79 l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~-------~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k------- 144 (194)
T PF08614_consen 79 LQEELAELYRSKGELAQQLVELNDELQELEKEL-------SEKERRLAELEAELAQLEEKIKDLEEELKEKNK------- 144 (194)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred ccccccccccccccccccccccccccchhhhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 345555555555555554444444555554443 333445666666666666666666666653321
Q ss_pred ccccCCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHh
Q 002982 764 SAVRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESKKREAYLEN 831 (861)
Q Consensus 764 ~~~~~~r~~~~~~~~~~~~~~~~~~~el~~~~~re~~le~~l~ek~~~e~el~~~~ee~k~~e~~len 831 (861)
.++.|+-|+.+-.=-=..+|.-+..-+.=-.+|-.+.=.-|.+||+-=|
T Consensus 145 -------------------~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~eAe~mN 193 (194)
T PF08614_consen 145 -------------------ANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKAQEAERMN 193 (194)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666666554444455555554444456677777777888876444
No 280
>PF05729 NACHT: NACHT domain
Probab=44.72 E-value=11 Score=36.30 Aligned_cols=17 Identities=24% Similarity=0.475 Sum_probs=15.0
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.|+-+|..|+|||..|.
T Consensus 2 ~l~I~G~~G~GKStll~ 18 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR 18 (166)
T ss_pred EEEEECCCCCChHHHHH
Confidence 47789999999999985
No 281
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=44.50 E-value=15 Score=43.50 Aligned_cols=38 Identities=18% Similarity=0.179 Sum_probs=24.4
Q ss_pred CCCCccceeEEeeCCCCCChHHHHHHHHHHH--Hcccccccccc
Q 002982 330 LSGHGRVSLICTVTPSSSSSEETHNTLKFAH--RAKHIEILAAQ 371 (861)
Q Consensus 330 LGGNskT~mIa~ISPs~~~~eETLsTLrFAs--RAk~Ikn~~~~ 371 (861)
|.-..+..+|||++..... +..|.+|- |..-|...|.-
T Consensus 320 f~iP~Nl~IIgTMNt~Drs----~~~lD~AlrRRF~fi~i~p~~ 359 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRS----LAVVDYALRRRFSFIDIEPGF 359 (459)
T ss_pred ccCCCCeEEEEecCccccc----hhhccHHHHhhhheEEecCCC
Confidence 4556789999999987653 44565554 45455555533
No 282
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=44.33 E-value=4.3e+02 Score=30.56 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccCcccccccccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHHHHHH
Q 002982 559 VEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDAL 638 (861)
Q Consensus 559 ~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~ik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~~ 638 (861)
.++++|-.+|..--+.|.+-|+.|-..++.-. .+.|.+|++|.+-..+.+++++.|..+.++|+...
T Consensus 241 ~~L~kl~~~i~~~lekI~sREk~iN~qle~l~-------------~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~Is 307 (359)
T PF10498_consen 241 SQLDKLQQDISKTLEKIESREKYINNQLEPLI-------------QEYRSAQDELSEVQEKYKQASEGVSERTRELAEIS 307 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 46888999999999999999999987666533 34799999999999999999999999999888765
Q ss_pred h
Q 002982 639 E 639 (861)
Q Consensus 639 ~ 639 (861)
+
T Consensus 308 e 308 (359)
T PF10498_consen 308 E 308 (359)
T ss_pred H
Confidence 5
No 283
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=44.04 E-value=7.1e+02 Score=31.69 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHhHHHHhcCCChHHHHHHHHHHHHHHHh
Q 002982 520 IDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKG 570 (861)
Q Consensus 520 ~dllreq~k~l~geva~~~s~lkrl~e~a~~~p~~~~~~~~~~~l~~ei~~ 570 (861)
|+| .+-+-.|-+||. |- .+|.+-|.+.-+...|++|++||..
T Consensus 432 ~~L-e~elekLk~eil------KA--k~s~~~~~~~~L~e~IeKLk~E~d~ 473 (762)
T PLN03229 432 REL-EGEVEKLKEQIL------KA--KESSSKPSELALNEMIEKLKKEIDL 473 (762)
T ss_pred ccH-HHHHHHHHHHHH------hc--ccccCCCCChHHHHHHHHHHHHHHH
Confidence 444 344555566653 21 1345688888888899999998863
No 284
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=44.03 E-value=9.5e+02 Score=32.24 Aligned_cols=31 Identities=19% Similarity=0.122 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHhhhhhH
Q 002982 806 LEKDQQEAELQRKVEESKKREAYLENELANM 836 (861)
Q Consensus 806 ~ek~~~e~el~~~~ee~k~~e~~lenelanm 836 (861)
.+|-++=.+|+.+.++-.++=.+++-|||.+
T Consensus 1706 ~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~L 1736 (1758)
T KOG0994|consen 1706 NEKLDRLKDLELEYLRNEQALEDKAAELAGL 1736 (1758)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhH
Confidence 4555555666666666666555556666554
No 285
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=43.97 E-value=7e+02 Score=30.68 Aligned_cols=97 Identities=19% Similarity=0.273 Sum_probs=55.5
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHhHHH---HhcCCChHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccCccc
Q 002982 522 LLREQQKILAGEVALHSSALKRLSEE---AARNPQKEQL-QVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSE 597 (861)
Q Consensus 522 llreq~k~l~geva~~~s~lkrl~e~---a~~~p~~~~~-~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~ 597 (861)
-|+.++..++-+++=++...-+|-|+ .-+.|...+. ....+.|.|++.--+.=|-.++.+.. .
T Consensus 225 ~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~-------------~ 291 (581)
T KOG0995|consen 225 RLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQ-------------H 291 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhH-------------H
Confidence 46778888898888888888777654 4455555552 22222244444433333333332211 0
Q ss_pred ccccccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHHH
Q 002982 598 VSQVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLN 635 (861)
Q Consensus 598 ~~~ik~adnrilqeql~~k~~e~~elqe~v~~l~qql~ 635 (861)
|.+.- --+++.+..|..||+-||..+..|+-|+.
T Consensus 292 ~~~~l----~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 292 MEKKL----EMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11100 12456666788888888888888888863
No 286
>PF13514 AAA_27: AAA domain
Probab=43.94 E-value=9e+02 Score=31.94 Aligned_cols=65 Identities=25% Similarity=0.299 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHH
Q 002982 685 AAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELA 752 (861)
Q Consensus 685 ~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~ 752 (861)
..+++.+++++.++.+.-..++.+-..|.+.+-.... ..-.++...+.+...|..+-..+...|.
T Consensus 807 ~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~a~~~~~---e~l~~~~~~~~~~~~l~~~~~~~~~~l~ 871 (1111)
T PF13514_consen 807 QEQLEELEEELEQAEEELEELEAELAELLEQAGVEDE---EELREAEERAEERRELREELEDLERQLE 871 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666556665555555553322111 1122333455566666555555555553
No 287
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=43.45 E-value=13 Score=44.47 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=14.5
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.|+-||++|+|||+...
T Consensus 218 GILLyGPPGTGKT~LAK 234 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIAK 234 (512)
T ss_pred ceEEECCCCCcHHHHHH
Confidence 47889999999998764
No 288
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=43.09 E-value=25 Score=41.41 Aligned_cols=19 Identities=42% Similarity=0.490 Sum_probs=16.5
Q ss_pred CeeEEEecccCCCCccccc
Q 002982 141 NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (861)
...|+-+|.+|+|||+|..
T Consensus 95 p~vI~lvG~~GsGKTTtaa 113 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAA 113 (437)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4578889999999999985
No 289
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=43.07 E-value=16 Score=43.92 Aligned_cols=42 Identities=17% Similarity=0.305 Sum_probs=29.0
Q ss_pred EeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCcccc
Q 002982 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
.+||.+++.... ++.+...++.+....|+-||++|+|||+.-
T Consensus 62 ~~f~~iiGqs~~--------i~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 62 KSFDEIIGQEEG--------IKALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CCHHHeeCcHHH--------HHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 578888776432 233333345666677888999999999875
No 290
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=43.05 E-value=10 Score=36.05 Aligned_cols=16 Identities=44% Similarity=0.609 Sum_probs=13.6
Q ss_pred EEEecccCCCCccccc
Q 002982 144 IFAYGVTSSGKTHTMH 159 (861)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (861)
++-||++|+|||+.+.
T Consensus 2 ~~i~G~~G~GKT~l~~ 17 (165)
T cd01120 2 ILVFGPTGSGKTTLAL 17 (165)
T ss_pred eeEeCCCCCCHHHHHH
Confidence 4569999999999874
No 291
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=42.96 E-value=2.1e+02 Score=30.54 Aligned_cols=122 Identities=25% Similarity=0.225 Sum_probs=68.5
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhHHHHhHHHHhcCCCh----HHHHHHHHHHHHHHHhHHHHH--------HHHHH----
Q 002982 517 IDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQK----EQLQVEIKKLRDEIKGKNDQI--------ALLEK---- 580 (861)
Q Consensus 517 ~d~~dllreq~k~l~geva~~~s~lkrl~e~a~~~p~~----~~~~~~~~~l~~ei~~k~~qi--------~~le~---- 580 (861)
..+++-|+.|+-=-.++++.=..-|+-|-+-+..=..- .-++.++.+...|..++-+++ +.||+
T Consensus 46 ~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~~e 125 (206)
T PF14988_consen 46 AKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEASE 125 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666555555555555555554433321110 113334444444444444444 23544
Q ss_pred -HHHhhhhcccCc-----------c--CcccccccccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHHHHHH
Q 002982 581 -QIADSIMTSHNT-----------M--DNSEVSQVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDAL 638 (861)
Q Consensus 581 -~i~~s~~~s~~~-----------~--~~~~~~~ik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~~ 638 (861)
+|...++..+.. | ...+..+=--++|+-|++.|.+-+-|+..|+.+...|+.|-..+.
T Consensus 126 ~~i~~l~e~a~~el~~k~~ale~~A~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~ 197 (206)
T PF14988_consen 126 LKILQLGERAHKELKKKAQALELAAKKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQ 197 (206)
T ss_pred hhHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444432 1 111222222379999999999999999999999999998866543
No 292
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=42.84 E-value=13 Score=40.75 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=16.5
Q ss_pred CeeEEEecccCCCCccccc
Q 002982 141 NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (861)
+-.|+-+|++|+|||-++.
T Consensus 33 ~~pvLl~G~~GtGKT~li~ 51 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQ 51 (272)
T ss_dssp TEEEEEESSTTSSHHHHHH
T ss_pred CCcEEEECCCCCchhHHHH
Confidence 5677889999999999885
No 293
>PHA02244 ATPase-like protein
Probab=42.80 E-value=22 Score=41.07 Aligned_cols=46 Identities=17% Similarity=0.219 Sum_probs=26.2
Q ss_pred EeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
..||.-|-... ..+......+...+-.|.+ |+-+|+||+|||+...
T Consensus 92 ~~~d~~~ig~s---p~~~~~~~ri~r~l~~~~P--VLL~GppGtGKTtLA~ 137 (383)
T PHA02244 92 SGIDTTKIASN---PTFHYETADIAKIVNANIP--VFLKGGAGSGKNHIAE 137 (383)
T ss_pred hhCCCcccCCC---HHHHHHHHHHHHHHhcCCC--EEEECCCCCCHHHHHH
Confidence 34555553322 3333333344444445655 4558999999998875
No 294
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=42.79 E-value=1.4e+02 Score=34.69 Aligned_cols=67 Identities=28% Similarity=0.376 Sum_probs=38.5
Q ss_pred CChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccCcccccccccchhhhHHHHHHhHHhhhhhHHHHHHHHH
Q 002982 552 PQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQVKAADNRIIQEQLNQKICECEGLQETIGFLK 631 (861)
Q Consensus 552 p~~~~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~ik~adnrilqeql~~k~~e~~elqe~v~~l~ 631 (861)
|.+.+-. -..++..||.+.|+.-+.||.-+-.--+. +| -|.--|-|-||+.-+-|+ .|+
T Consensus 254 ~~~s~~~-~l~aileeL~eIk~~q~~Leesye~Lke~------------~k-rdy~fi~etLQEERyR~e-------rLE 312 (455)
T KOG3850|consen 254 PYHSQGA-ALDAILEELREIKETQALLEESYERLKEQ------------IK-RDYKFIAETLQEERYRYE-------RLE 312 (455)
T ss_pred cccccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HH-HHHHHHHHHHHHHHHHHH-------HHH
Confidence 5555531 16688889999888888887644311111 11 134455566666555554 456
Q ss_pred HHHHHHHh
Q 002982 632 QQLNDALE 639 (861)
Q Consensus 632 qql~~~~~ 639 (861)
.||+++++
T Consensus 313 EqLNdlte 320 (455)
T KOG3850|consen 313 EQLNDLTE 320 (455)
T ss_pred HHHhHHHH
Confidence 67776654
No 295
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=42.67 E-value=1.3e+02 Score=31.35 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=8.9
Q ss_pred hHHHHHHhHHhhhhhHHHHHHHHHHHH
Q 002982 608 IIQEQLNQKICECEGLQETIGFLKQQL 634 (861)
Q Consensus 608 ilqeql~~k~~e~~elqe~v~~l~qql 634 (861)
.+...+..+...+.+|+..+..|++.+
T Consensus 106 ~l~~~~~~~~~~l~~l~~~~~~L~~~~ 132 (194)
T PF08614_consen 106 ELEKELSEKERRLAELEAELAQLEEKI 132 (194)
T ss_dssp --------HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 296
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=42.67 E-value=21 Score=44.15 Aligned_cols=38 Identities=29% Similarity=0.340 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 122 RHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 122 eeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
-.||..+-.-...-+-.|.|.||+.-|.+|||||.|..
T Consensus 73 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k 110 (677)
T smart00242 73 PHVFAIADNAYRNMLNDKENQSIIISGESGAGKTENTK 110 (677)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHHH
Confidence 45776443333333346999999999999999999974
No 297
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=42.63 E-value=17 Score=40.43 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=15.6
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..++-||++|+|||+...
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 457789999999999986
No 298
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=42.61 E-value=4e+02 Score=30.36 Aligned_cols=58 Identities=36% Similarity=0.482 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcCCCc
Q 002982 684 QAAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKSSPT 759 (861)
Q Consensus 684 q~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~~~~~~~~ 759 (861)
+-.|+|+|-|-+.+| ||+-.|-|.|+-|. ...--.|..|+.+-.-|..|||-+|-.++
T Consensus 33 KV~EVEKLsqTi~EL---------------EEaiLagGaaaNav---rdYqrq~~elneEkrtLeRELARaKV~aN 90 (351)
T PF07058_consen 33 KVLEVEKLSQTIREL---------------EEAILAGGAAANAV---RDYQRQVQELNEEKRTLERELARAKVSAN 90 (351)
T ss_pred HHHHHHHHHHHHHHH---------------HHHHHhcchHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 578999999999987 56777777666665 45556788888888899999999997663
No 299
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=42.55 E-value=10 Score=42.43 Aligned_cols=107 Identities=15% Similarity=0.285 Sum_probs=54.1
Q ss_pred eceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccc-----cC-CccceeeEEEEEEecceee-ecc
Q 002982 111 YDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH-----TP-NREFLLRVSYLEIYNEVVN-DLL 183 (861)
Q Consensus 111 FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~-----g~-~~~f~V~vSylEIYnE~I~-DLL 183 (861)
||.+++.+..-..+.+.+ ..+ ...+..|+-+|.+||||++.-. ++ ...-.|.|.|-.+..+.+- +|+
T Consensus 5 ~~~liG~S~~~~~~~~~i-----~~~-a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lf 78 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQV-----SRL-APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELF 78 (326)
T ss_pred cCccEECCHHHHHHHHHH-----HHH-hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHc
Confidence 455555444333333322 222 3567889999999999988753 22 1122233443333322221 122
Q ss_pred CCCC---------CCceeeeCCCC-eEEcccEEEEecCHHHHHHHHHHhH
Q 002982 184 NPAG---------QNLRIREDSQG-TFVEGVKEEVVLSPAHALSLIAAGE 223 (861)
Q Consensus 184 ~p~~---------~~L~Ired~~G-~~V~gLse~~V~S~ee~~~lL~~G~ 223 (861)
.... ..-.+....+| .|+.++......-...++.+|..|.
T Consensus 79 g~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~ 128 (326)
T PRK11608 79 GHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGE 128 (326)
T ss_pred cccccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCc
Confidence 2110 01112223345 5777777776666666777776654
No 300
>PRK04195 replication factor C large subunit; Provisional
Probab=42.45 E-value=12 Score=44.22 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=21.5
Q ss_pred HHHHHHhhcCC-CeeEEEecccCCCCccccc
Q 002982 130 QHVVSGAMDGI-NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 130 ~plV~~vl~Gy-N~tIfAYGqTGSGKTyTM~ 159 (861)
..++.....|. ...++-||++|+|||++..
T Consensus 27 ~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 27 REWIESWLKGKPKKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 34444444554 4568889999999999885
No 301
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=42.43 E-value=22 Score=40.03 Aligned_cols=18 Identities=39% Similarity=0.469 Sum_probs=15.3
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..|.-.|++|+|||.|+.
T Consensus 115 ~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIG 132 (318)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 466678999999999985
No 302
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=42.37 E-value=8.3 Score=47.75 Aligned_cols=30 Identities=33% Similarity=0.410 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHhhhhhhHHHHHHhhcC
Q 002982 727 AVELKALSEEVAKLMNHKERLTAELAAAKS 756 (861)
Q Consensus 727 avelk~l~eevtkl~~qn~~l~~el~~~~~ 756 (861)
..|++.|.+++.-|..+.++|..|....++
T Consensus 390 ~~e~~~L~ek~~~l~~eke~l~~e~~~L~e 419 (713)
T PF05622_consen 390 EFENKQLEEKLEALEEEKERLQEERDSLRE 419 (713)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666655554
No 303
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=42.36 E-value=8.1e+02 Score=30.96 Aligned_cols=64 Identities=23% Similarity=0.257 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhc
Q 002982 685 AAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAK 755 (861)
Q Consensus 685 ~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~~~~ 755 (861)
..|-....|++-.|.+++.-|+.+++.|. --+.+.--.+++|-+.++.|...=.+|.+|+.-..
T Consensus 488 m~e~~~~~q~~k~L~~ek~~l~~~i~~l~-------~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~ 551 (698)
T KOG0978|consen 488 MSERIKANQKHKLLREEKSKLEEQILTLK-------ASVDKLELKIGKLEEQERGLTSNESKLIKELTTLT 551 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHH
Confidence 56778888999999999999998888774 22334556678889999999888888888876544
No 304
>PRK10884 SH3 domain-containing protein; Provisional
Probab=42.03 E-value=1.8e+02 Score=31.01 Aligned_cols=55 Identities=13% Similarity=0.156 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHH
Q 002982 785 LDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESKKREAYLENELANMWVL 839 (861)
Q Consensus 785 ~~~~~el~~~~~re~~le~~l~ek~~~e~el~~~~ee~k~~e~~lenelanmwvl 839 (861)
.+|+..+..+.+-..-|+.-..+-.+.=++++.++++.+..=.++.++...-|.+
T Consensus 121 ~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~ 175 (206)
T PRK10884 121 AEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFM 175 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555554444444444433333333445566666666666666666666653
No 305
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=42.00 E-value=25 Score=38.06 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=27.0
Q ss_pred cCCCCcchhHHHHHHHHHHHHhhc-C-CCeeEEEecccCCCCccccc
Q 002982 115 FGPTTTTRHVYDIAAQHVVSGAMD-G-INGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 115 F~~~atQeeVY~~~~~plV~~vl~-G-yN~tIfAYGqTGSGKTyTM~ 159 (861)
|++-..|+++-.. .+.++..+.. | .-..++-||++|.|||..-.
T Consensus 23 L~efiGQ~~l~~~-l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 23 LDEFIGQEHLKGN-LKILIRAAKKRGEALDHMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp CCCS-S-HHHHHH-HHHHHHHHHCTTS---EEEEESSTTSSHHHHHH
T ss_pred HHHccCcHHHHhh-hHHHHHHHHhcCCCcceEEEECCCccchhHHHH
Confidence 3444567888764 4666766653 2 33457779999999987654
No 306
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.96 E-value=5.4e+02 Score=28.75 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhHHhHhhhhhhhhhchhh
Q 002982 685 AAEIEELNRKVTELTEAKEQLELRNQKLS 713 (861)
Q Consensus 685 ~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ 713 (861)
.-=|+.+|.++..|.+.+..|+..+++|.
T Consensus 147 k~ile~qk~dk~~Le~kq~~l~~~~e~l~ 175 (265)
T COG3883 147 KKILEQQKEDKKSLEEKQAALEDKLETLV 175 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888888777763
No 307
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=41.77 E-value=26 Score=40.30 Aligned_cols=47 Identities=19% Similarity=0.391 Sum_probs=28.2
Q ss_pred eEe-ec-eecCCCCcchhHHHHHHHHHHHHhhcC---CCeeEEEecccCCCCccccc
Q 002982 108 AYA-YD-RVFGPTTTTRHVYDIAAQHVVSGAMDG---INGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 108 ~F~-FD-~VF~~~atQeeVY~~~~~plV~~vl~G---yN~tIfAYGqTGSGKTyTM~ 159 (861)
.|. || .||+- +++-+.++.-+ .....| -+..|.-.|++|+|||....
T Consensus 45 ~y~~F~~~~~G~----~~~i~~lv~~l-~~~a~g~~~~r~il~L~GPPGsGKStla~ 96 (361)
T smart00763 45 RYRFFDHDFFGM----EEAIERFVNYF-KSAAQGLEERKQILYLLGPVGGGKSSLVE 96 (361)
T ss_pred eccccchhccCc----HHHHHHHHHHH-HHHHhcCCCCCcEEEEECCCCCCHHHHHH
Confidence 344 44 67764 44444444322 333333 45667889999999998764
No 308
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=41.74 E-value=14 Score=37.95 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=19.0
Q ss_pred HHhhcCC---CeeEEEecccCCCCccccc
Q 002982 134 SGAMDGI---NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 134 ~~vl~Gy---N~tIfAYGqTGSGKTyTM~ 159 (861)
|.++.|- ...+.-||++|||||....
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 30 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNICM 30 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 3445443 5678889999999997764
No 309
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=41.49 E-value=11 Score=37.31 Aligned_cols=18 Identities=33% Similarity=0.577 Sum_probs=15.1
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
+..+-||.+|+|||..|.
T Consensus 20 g~~vi~G~Ng~GKStil~ 37 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTILE 37 (202)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 556679999999999874
No 310
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=41.43 E-value=28 Score=35.95 Aligned_cols=46 Identities=33% Similarity=0.380 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhh
Q 002982 784 SLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESKKREAYLENEL 833 (861)
Q Consensus 784 ~~~~~~el~~~~~re~~le~~l~ek~~~e~el~~~~ee~k~~e~~lenel 833 (861)
++||-.=||...||-+.||.-|-||+.+..|.||=-||+. +|--||
T Consensus 2 LeD~EsklN~AIERnalLE~ELdEKE~L~~~~QRLkDE~R----DLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELDEKENLREEVQRLKDELR----DLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 5788899999999999999999999999999999999875 444444
No 311
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=41.42 E-value=13 Score=46.21 Aligned_cols=52 Identities=13% Similarity=0.289 Sum_probs=30.0
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHH-HhhcCC----CeeEEEecccCCCCccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVS-GAMDGI----NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~-~vl~Gy----N~tIfAYGqTGSGKTyTM~ 159 (861)
.++||.|-+.+..-+.+.+.+..|+-. .++..+ ...|+-||++|+|||+.+.
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~lar 230 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAK 230 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHH
Confidence 366776665444444444444333322 122221 2468899999999998875
No 312
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=41.15 E-value=12 Score=42.46 Aligned_cols=18 Identities=39% Similarity=0.447 Sum_probs=14.9
Q ss_pred CeeEEEecccCCCCcccc
Q 002982 141 NGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM 158 (861)
-+.|+..|+||||||+--
T Consensus 97 KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 97 KSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eccEEEECCCCCcHHHHH
Confidence 356888999999999854
No 313
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=41.02 E-value=23 Score=38.33 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=20.4
Q ss_pred HHHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 128 AAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 128 ~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
+...++..+..|.+ |+-+|++|+|||....
T Consensus 10 l~~~~l~~l~~g~~--vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 10 VTSRALRYLKSGYP--VHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHHHHhcCCe--EEEEcCCCCCHHHHHH
Confidence 33444555555654 4568999999998875
No 314
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=40.95 E-value=8.3 Score=42.51 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=18.9
Q ss_pred cCCCeeEEEecccCCCCcccc
Q 002982 138 DGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 138 ~GyN~tIfAYGqTGSGKTyTM 158 (861)
.|++-+|+..|++|+|||.-+
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 488999999999999999765
No 315
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=40.86 E-value=1.7e+02 Score=31.35 Aligned_cols=89 Identities=28% Similarity=0.359 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHhhhhhhhhhhHHHHhHHHHhcCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccCcccc
Q 002982 519 QIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEV 598 (861)
Q Consensus 519 ~~dllreq~k~l~geva~~~s~lkrl~e~a~~~p~~~~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~ 598 (861)
.|-||.-|+|=.-.||+...+ +|--|+..+++-+.+++..|.++.+.-.+...
T Consensus 11 EIsLLKqQLke~q~E~~~K~~--------------------Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~------- 63 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDS--------------------EIVSLRAQLRELRAELRNKESQIQELQDSLRT------- 63 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHh--------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-------
Confidence 466777777777777763332 46677777788888888888887766554433
Q ss_pred cccccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHHHHH
Q 002982 599 SQVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDA 637 (861)
Q Consensus 599 ~~ik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~ 637 (861)
|.+.=-+.+.+|+.+.+|..-|+++|..|++.+..+
T Consensus 64 ---K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~L 99 (202)
T PF06818_consen 64 ---KQLELEVCENELQRKKNEAELLREKLGQLEAELAEL 99 (202)
T ss_pred ---hhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHH
Confidence 233335678899999999999999999999888764
No 316
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.71 E-value=18 Score=42.40 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=19.3
Q ss_pred HHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 132 VVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.|..++.|.+ +++..+||||||.+..
T Consensus 19 ai~~~l~g~d--vlv~apTGsGKTl~y~ 44 (470)
T TIGR00614 19 VINAVLLGRD--CFVVMPTGGGKSLCYQ 44 (470)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHhHHHH
Confidence 3455678886 4666899999998753
No 317
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=40.32 E-value=2.8e+02 Score=31.39 Aligned_cols=109 Identities=17% Similarity=0.174 Sum_probs=51.0
Q ss_pred ccchhhHHHHHHHHHHhhhhhhhhhhHHHHhHHHHhcCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh--hhcccC
Q 002982 514 IKTIDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADS--IMTSHN 591 (861)
Q Consensus 514 ~~~~d~~dllreq~k~l~geva~~~s~lkrl~e~a~~~p~~~~~~~~~~~l~~ei~~k~~qi~~le~~i~~s--~~~s~~ 591 (861)
+-..|-+|-+++..|=++-.-.-. .-.+...-|...+++|.+-+++|..|+..|... .....+
T Consensus 51 ~~fA~~ld~~~~kl~~Ms~~ql~~---------------~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~ 115 (301)
T PF06120_consen 51 IEFADSLDELKEKLKEMSSTQLRA---------------NIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKG 115 (301)
T ss_pred HHHHHhhHHHHHHHHhcCHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 334566677777666555211100 012334456666666666666666666666422 111111
Q ss_pred ccCcccccc----c--ccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHHHHH
Q 002982 592 TMDNSEVSQ----V--KAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDA 637 (861)
Q Consensus 592 ~~~~~~~~~----i--k~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~ 637 (861)
......+-. + -+.++.++..+|.......+.+++++.....+|++.
T Consensus 116 ~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~ 167 (301)
T PF06120_consen 116 ITENGYIINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQATLNDL 167 (301)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111100 0 133445555555555555555555555555555543
No 318
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=39.89 E-value=17 Score=37.81 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=22.9
Q ss_pred HHHHHHhhcC---CCeeEEEecccCCCCccccc
Q 002982 130 QHVVSGAMDG---INGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 130 ~plV~~vl~G---yN~tIfAYGqTGSGKTyTM~ 159 (861)
-+-+|.++.| ...++.-||++|||||..+.
T Consensus 5 ~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 37 (235)
T cd01123 5 SKALDELLGGGIETGSITEIFGEFGSGKTQLCH 37 (235)
T ss_pred chhhHhhccCCCCCCeEEEEECCCCCCHHHHHH
Confidence 3556777775 45677889999999998774
No 319
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=39.84 E-value=18 Score=45.55 Aligned_cols=25 Identities=36% Similarity=0.367 Sum_probs=20.8
Q ss_pred HHHhhcCCCeeEEEecccCCCCccccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
+..+.+|.|+.|.| +||||||-+-|
T Consensus 31 ~~~i~~G~nvLiiA--PTGsGKTeAAf 55 (814)
T COG1201 31 IPEIHSGENVLIIA--PTGSGKTEAAF 55 (814)
T ss_pred HHHHhCCCceEEEc--CCCCChHHHHH
Confidence 34567999999987 99999998854
No 320
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=39.81 E-value=12 Score=39.93 Aligned_cols=19 Identities=32% Similarity=0.558 Sum_probs=16.4
Q ss_pred CeeEEEecccCCCCccccc
Q 002982 141 NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (861)
...++-||.+|+|||++..
T Consensus 12 ~~~~liyG~~G~GKtt~a~ 30 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIK 30 (220)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568999999999999874
No 321
>PRK14974 cell division protein FtsY; Provisional
Probab=39.70 E-value=31 Score=39.27 Aligned_cols=19 Identities=37% Similarity=0.441 Sum_probs=16.5
Q ss_pred CeeEEEecccCCCCccccc
Q 002982 141 NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (861)
...|.-.|++|+|||.|+.
T Consensus 140 ~~vi~~~G~~GvGKTTtia 158 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIA 158 (336)
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 4678889999999999985
No 322
>PRK04328 hypothetical protein; Provisional
Probab=39.43 E-value=19 Score=38.66 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=21.9
Q ss_pred HHHHHHhhcC---CCeeEEEecccCCCCccc
Q 002982 130 QHVVSGAMDG---INGTIFAYGVTSSGKTHT 157 (861)
Q Consensus 130 ~plV~~vl~G---yN~tIfAYGqTGSGKTyT 157 (861)
-+-+|.++.| ...+++-+|.+|+|||.-
T Consensus 9 i~~LD~lL~GGip~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 9 IPGMDEILYGGIPERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred chhHHHHhcCCCcCCcEEEEEcCCCCCHHHH
Confidence 3457777876 578888999999999754
No 323
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=39.39 E-value=22 Score=39.76 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=20.3
Q ss_pred hhcCCCeeEEEecccCCCCccccc
Q 002982 136 AMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 136 vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
-..+-+.-++-||+.|||||.+|.
T Consensus 18 ~~~~~~~r~vL~G~~GsGKS~~L~ 41 (309)
T PF10236_consen 18 DKSSKNNRYVLTGERGSGKSVLLA 41 (309)
T ss_pred cccCCceEEEEECCCCCCHHHHHH
Confidence 345677789999999999999996
No 324
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=39.28 E-value=19 Score=47.04 Aligned_cols=32 Identities=31% Similarity=0.361 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCCCeeEEEecccCCCCcccc
Q 002982 126 DIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 126 ~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
..++..++..+..|...+++. .+||||||+||
T Consensus 419 ~~AI~ai~~a~~~g~r~~Ll~-maTGSGKT~ta 450 (1123)
T PRK11448 419 EDAIQAVEKAIVEGQREILLA-MATGTGKTRTA 450 (1123)
T ss_pred HHHHHHHHHHHHhccCCeEEE-eCCCCCHHHHH
No 325
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=39.23 E-value=5e+02 Score=29.27 Aligned_cols=66 Identities=30% Similarity=0.372 Sum_probs=40.9
Q ss_pred HHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHH----HHHHHhhHHHHHHHhhhhhhHHHHHH
Q 002982 687 EIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAA----AVELKALSEEVAKLMNHKERLTAELA 752 (861)
Q Consensus 687 e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaa----avelk~l~eevtkl~~qn~~l~~el~ 752 (861)
+-+.|......|.+....|..+.+.|.+|..-.+.++... ..||.+|-.|+..++.+.+...++|+
T Consensus 164 D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~ 233 (325)
T PF08317_consen 164 DYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELA 233 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555566666666666777777766666655533 36777777777776666665544444
No 326
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.21 E-value=26 Score=39.01 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHh
Q 002982 809 DQQEAELQRKVEESKKREAYLEN 831 (861)
Q Consensus 809 ~~~e~el~~~~ee~k~~e~~len 831 (861)
..+|+||+||-+|-|.||..|-|
T Consensus 70 ~~rqeEL~Rke~ELdRREr~~a~ 92 (313)
T KOG3088|consen 70 LKKQEELRRKEQELDRRERALAR 92 (313)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhh
Confidence 45688888888888888876665
No 327
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=39.08 E-value=6.4e+02 Score=31.92 Aligned_cols=40 Identities=23% Similarity=0.366 Sum_probs=27.2
Q ss_pred hhh-hhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHH
Q 002982 712 LSE-ESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELA 752 (861)
Q Consensus 712 l~e-e~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~ 752 (861)
|.+ |=.+++||..-.. +|+.|+.-+.++..+-+++...++
T Consensus 630 LS~AEr~~~~EL~~~~~-~l~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 630 LSEAEREFKKELERMKD-QLQDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred CCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444 7788888885444 688888888777666666554444
No 328
>PHA01750 hypothetical protein
Probab=38.92 E-value=47 Score=29.42 Aligned_cols=41 Identities=22% Similarity=0.325 Sum_probs=34.6
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 002982 545 SEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADS 585 (861)
Q Consensus 545 ~e~a~~~p~~~~~~~~~~~l~~ei~~k~~qi~~le~~i~~s 585 (861)
..|+-+|.-.+=.+-|..||..||++-+-.+.-||+++++-
T Consensus 28 IKq~lkdAvkeIV~~ELdNL~~ei~~~kikqDnl~~qv~ei 68 (75)
T PHA01750 28 IKQALKDAVKEIVNSELDNLKTEIEELKIKQDELSRQVEEI 68 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45666777777788899999999999999999999999864
No 329
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=38.87 E-value=20 Score=40.18 Aligned_cols=19 Identities=37% Similarity=0.496 Sum_probs=16.1
Q ss_pred CeeEEEecccCCCCccccc
Q 002982 141 NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (861)
..+|+-.|.||||||+.|.
T Consensus 143 ~~siii~G~t~sGKTt~ln 161 (312)
T COG0630 143 RKSIIICGGTASGKTTLLN 161 (312)
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3567888999999999985
No 330
>PRK10865 protein disaggregation chaperone; Provisional
Probab=38.72 E-value=18 Score=45.98 Aligned_cols=18 Identities=33% Similarity=0.493 Sum_probs=15.5
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
+.++-+|+||+|||++..
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~ 616 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCK 616 (857)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 577888999999999874
No 331
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=38.72 E-value=27 Score=43.22 Aligned_cols=37 Identities=30% Similarity=0.469 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHh-hcCCCeeEEEecccCCCCccccc
Q 002982 122 RHVYDIAAQHVVSGA-MDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 122 eeVY~~~~~plV~~v-l~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
-.||..+ ......+ -.|.|.||+.-|.+|||||.|..
T Consensus 69 PHifaiA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K 106 (674)
T cd01384 69 PHVFAIA-DAAYRAMINEGKSQSILVSGESGAGKTETTK 106 (674)
T ss_pred CCHHHHH-HHHHHHHHHcCCCceEEEECCCCCCchhHHH
Confidence 3566533 3333333 36999999999999999999873
No 332
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=38.69 E-value=17 Score=44.46 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=18.8
Q ss_pred HHHhhcCCCeeEEEecccCCCCcccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
+..++.|.+ |++.+|||||||.+.
T Consensus 37 i~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 37 IPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 445567876 678889999999875
No 333
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=38.63 E-value=13 Score=35.99 Aligned_cols=16 Identities=38% Similarity=0.547 Sum_probs=13.5
Q ss_pred EEEecccCCCCccccc
Q 002982 144 IFAYGVTSSGKTHTMH 159 (861)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (861)
|+-+|.+|||||+.-.
T Consensus 2 i~l~G~~GsGKST~a~ 17 (150)
T cd02021 2 IVVMGVSGSGKSTVGK 17 (150)
T ss_pred EEEEcCCCCCHHHHHH
Confidence 6778999999998754
No 334
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=38.55 E-value=13 Score=42.07 Aligned_cols=15 Identities=40% Similarity=0.609 Sum_probs=12.9
Q ss_pred EEEecccCCCCcccc
Q 002982 144 IFAYGVTSSGKTHTM 158 (861)
Q Consensus 144 IfAYGqTGSGKTyTM 158 (861)
...||+|||||++-+
T Consensus 90 ~~VYGPTG~GKSqLl 104 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLL 104 (369)
T ss_pred EEEECCCCCCHHHHH
Confidence 456999999999976
No 335
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=38.34 E-value=28 Score=43.16 Aligned_cols=37 Identities=27% Similarity=0.420 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHhh-cCCCeeEEEecccCCCCccccc
Q 002982 122 RHVYDIAAQHVVSGAM-DGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 122 eeVY~~~~~plV~~vl-~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
-.||. ++......++ .|.|.||+.-|.+|||||.+..
T Consensus 67 PHifa-vA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k 104 (679)
T cd00124 67 PHVFA-IADRAYRNMLRDRRNQSIIISGESGAGKTENTK 104 (679)
T ss_pred CCHHH-HHHHHHHHHHhcCCCceEEEecCCCCCchHHHH
Confidence 45776 3344444444 5999999999999999999873
No 336
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=38.22 E-value=1.1e+03 Score=31.20 Aligned_cols=151 Identities=23% Similarity=0.252 Sum_probs=77.4
Q ss_pred ccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHhhc-CCCCcchhhhhhhhhccccccccchhhhhhhhhhhhhHH
Q 002982 602 KAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALELR-NFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDINEDSR 680 (861)
Q Consensus 602 k~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (861)
+-+-+|-|+-+|.+|..-+.+|.+++..|+-.+..+-... ++...+.-+.+.....+...+ .........++..-++.
T Consensus 182 le~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre-~aer~d~~ykerlmDs~ 260 (1195)
T KOG4643|consen 182 LEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALRE-QAERPDTTYKERLMDSD 260 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH-hhhcCCCccchhhhhhH
Confidence 3456899999999998777777777777776664432110 111111000011111110000 00000011122222221
Q ss_pred HHHHHHHHHHHHHHhhHHhHhhhhhhhhhchhhhhh----------hhhhhhh---HHHHHH---HHhhHHHHHHHhhhh
Q 002982 681 LQVQAAEIEELNRKVTELTEAKEQLELRNQKLSEES----------SYAKGLA---SAAAVE---LKALSEEVAKLMNHK 744 (861)
Q Consensus 681 ~~~q~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~----------~yak~la---saaave---lk~l~eevtkl~~qn 744 (861)
--..-.|+||+...-|.|+|..|+.|-|||---+ .|-+.|+ +---++ +--|-+|.-+|+.|+
T Consensus 261 --fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~ 338 (1195)
T KOG4643|consen 261 --FYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQK 338 (1195)
T ss_pred --HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 1145678999999999999999999999986544 2333333 222222 233555666666666
Q ss_pred hhHHHHHHhhc
Q 002982 745 ERLTAELAAAK 755 (861)
Q Consensus 745 ~~l~~el~~~~ 755 (861)
+-|..-....+
T Consensus 339 eqL~~~~ellq 349 (1195)
T KOG4643|consen 339 EQLDGQMELLQ 349 (1195)
T ss_pred HHhhhhhhHhh
Confidence 66554443333
No 337
>PRK05580 primosome assembly protein PriA; Validated
Probab=38.22 E-value=15 Score=45.47 Aligned_cols=18 Identities=39% Similarity=0.468 Sum_probs=15.0
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..++.+|+||||||.+..
T Consensus 163 ~~~Ll~~~TGSGKT~v~l 180 (679)
T PRK05580 163 SPFLLDGVTGSGKTEVYL 180 (679)
T ss_pred CcEEEECCCCChHHHHHH
Confidence 458889999999997764
No 338
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=38.16 E-value=28 Score=43.22 Aligned_cols=37 Identities=27% Similarity=0.431 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHhh-cCCCeeEEEecccCCCCccccc
Q 002982 122 RHVYDIAAQHVVSGAM-DGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 122 eeVY~~~~~plV~~vl-~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
-.||.. +......++ .|.|-||+.-|.+|||||.|..
T Consensus 75 PHiy~i-A~~Ay~~m~~~~~~QsIiisGESGAGKTet~K 112 (692)
T cd01385 75 PHIFAI-ADVAYYNMLRKKVNQCIVISGESGSGKTESTN 112 (692)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEecCCCCCchHHHH
Confidence 456663 333333333 6899999999999999999873
No 339
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=38.14 E-value=18 Score=40.31 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.9
Q ss_pred HhhcCCCeeEEEecccCCCCccccc
Q 002982 135 GAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 135 ~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
++-.||...|+|.|.||.|||..|.
T Consensus 36 sv~~GF~FNilCvGETg~GKsTLmd 60 (406)
T KOG3859|consen 36 SVSQGFCFNILCVGETGLGKSTLMD 60 (406)
T ss_pred HHhcCceEEEEEeccCCccHHHHHH
Confidence 4558999999999999999998774
No 340
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=38.09 E-value=20 Score=44.72 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=17.6
Q ss_pred cCCCeeEEEecccCCCCccccc
Q 002982 138 DGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 138 ~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.|--..++-||++|+|||++..
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLAR 70 (725)
T ss_pred cCCCceEEEECCCCCCHHHHHH
Confidence 3444577889999999999875
No 341
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=38.09 E-value=29 Score=43.02 Aligned_cols=37 Identities=38% Similarity=0.560 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHhh-cCCCeeEEEecccCCCCccccc
Q 002982 122 RHVYDIAAQHVVSGAM-DGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 122 eeVY~~~~~plV~~vl-~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
-.||.. +......++ .|.|-||+.-|.+|||||.|..
T Consensus 73 PHifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K 110 (677)
T cd01383 73 PHVYAI-ADTAYNEMMRDEVNQSIIISGESGAGKTETAK 110 (677)
T ss_pred CCHHHH-HHHHHHHHHHcCCCceEEEecCCCCCcchHHH
Confidence 356763 333344444 5999999999999999999873
No 342
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=37.85 E-value=19 Score=44.14 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=14.9
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.++-.|++|+|||||+.
T Consensus 175 ~~lI~GpPGTGKT~t~~ 191 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLV 191 (637)
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 46689999999999985
No 343
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=37.84 E-value=22 Score=37.35 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=21.9
Q ss_pred HHHHHHhhcCC---CeeEEEecccCCCCccccc
Q 002982 130 QHVVSGAMDGI---NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 130 ~plV~~vl~Gy---N~tIfAYGqTGSGKTyTM~ 159 (861)
-+-+|.++.|- ..+++.+|.+|+|||+-..
T Consensus 11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~ 43 (234)
T PRK06067 11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQ 43 (234)
T ss_pred CHHHHHhhCCCCcCCcEEEEECCCCCChHHHHH
Confidence 45566777533 5778888999999987653
No 344
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=37.83 E-value=2.2e+02 Score=32.20 Aligned_cols=87 Identities=23% Similarity=0.326 Sum_probs=60.1
Q ss_pred chhhHHHHHHHHHHhhhhhhhhhhHHHHhHHHHhc-CCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccC
Q 002982 516 TIDQIDLLREQQKILAGEVALHSSALKRLSEEAAR-NPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMD 594 (861)
Q Consensus 516 ~~d~~dllreq~k~l~geva~~~s~lkrl~e~a~~-~p~~~~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~ 594 (861)
...++.-|+.|.--+..+.+ -|...-.. +| +|..++.+|...+.||..+.++|.++..
T Consensus 212 ~~~~i~~L~~~l~~~~~~l~-------~l~~~~~~~~P-------~v~~l~~~i~~l~~~i~~e~~~i~~~~~------- 270 (362)
T TIGR01010 212 QLSLISTLEGELIRVQAQLA-------QLRSITPEQNP-------QVPSLQARIKSLRKQIDEQRNQLSGGLG------- 270 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHhhCCCCCC-------chHHHHHHHHHHHHHHHHHHHHhhcCCC-------
Confidence 44556666666555543333 23222333 55 6889999999999999999999987642
Q ss_pred cccccccccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHh
Q 002982 595 NSEVSQVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALE 639 (861)
Q Consensus 595 ~~~~~~ik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~~~ 639 (861)
..|+.+..|-.+|+-.+...++.+..++.
T Consensus 271 ----------------~~l~~~~~~~~~L~re~~~a~~~y~~~l~ 299 (362)
T TIGR01010 271 ----------------DSLNEQTADYQRLVLQNELAQQQLKAALT 299 (362)
T ss_pred ----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 15677778888888888888887776664
No 345
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=37.73 E-value=8.7e+02 Score=29.98 Aligned_cols=22 Identities=32% Similarity=0.367 Sum_probs=10.9
Q ss_pred HHHHHHHHhhHHhHhhhhhhhh
Q 002982 687 EIEELNRKVTELTEAKEQLELR 708 (861)
Q Consensus 687 e~e~lk~~~~~l~e~k~~l~~~ 708 (861)
+++.-|+++.+..-..++|-..
T Consensus 478 ~~e~~~~e~~e~~~al~el~~~ 499 (607)
T KOG0240|consen 478 ENEAAKDEVKEVLTALEELAVN 499 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555444444433
No 346
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=37.64 E-value=23 Score=39.36 Aligned_cols=30 Identities=27% Similarity=0.272 Sum_probs=21.2
Q ss_pred HHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 129 AQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 129 ~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
+.+++..++.+. ..|+-.|.||||||..|.
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll~ 162 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFLK 162 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHHH
Confidence 345566666544 456667999999999874
No 347
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=37.52 E-value=1.2e+02 Score=35.55 Aligned_cols=74 Identities=16% Similarity=0.245 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccCcccccccccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHHHHH
Q 002982 560 EIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDA 637 (861)
Q Consensus 560 ~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~ik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~ 637 (861)
+++.|++++++.+.+|..|++.|...-..........+... -=..|++.+.+...+.++|++.+..|+.+|...
T Consensus 335 ~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~----~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 335 KLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKE----QLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46677777777777777777765533322111111111111 114566667777788888888888888887765
No 348
>PRK00131 aroK shikimate kinase; Reviewed
Probab=37.39 E-value=16 Score=35.76 Aligned_cols=18 Identities=22% Similarity=0.301 Sum_probs=15.3
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
-+|+-+|.+|||||+.-.
T Consensus 5 ~~i~l~G~~GsGKstla~ 22 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGR 22 (175)
T ss_pred CeEEEEcCCCCCHHHHHH
Confidence 478999999999998754
No 349
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=37.32 E-value=14 Score=43.06 Aligned_cols=18 Identities=39% Similarity=0.525 Sum_probs=15.2
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..|+-.|+||+|||+|+.
T Consensus 222 ~~i~~vGptGvGKTTt~~ 239 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLA 239 (424)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 366777999999999986
No 350
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.28 E-value=24 Score=41.90 Aligned_cols=42 Identities=19% Similarity=0.344 Sum_probs=25.8
Q ss_pred eeceecCCCCcchhHHHHHHHHHHHHhhcCC-CeeEEEecccCCCCccccc
Q 002982 110 AYDRVFGPTTTTRHVYDIAAQHVVSGAMDGI-NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 110 ~FD~VF~~~atQeeVY~~~~~plV~~vl~Gy-N~tIfAYGqTGSGKTyTM~ 159 (861)
+||.|+++ +.+ ...+...+-.|. ...++-||++|+|||++..
T Consensus 12 ~~~divGq----~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~ 54 (472)
T PRK14962 12 TFSEVVGQ----DHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVAR 54 (472)
T ss_pred CHHHccCc----HHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHH
Confidence 57777664 333 222333333443 2457889999999999874
No 351
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=37.24 E-value=15 Score=36.72 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=13.6
Q ss_pred EEEecccCCCCccccc
Q 002982 144 IFAYGVTSSGKTHTMH 159 (861)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (861)
|+.+|.+|||||+.-.
T Consensus 2 i~i~G~pGsGKst~a~ 17 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCA 17 (183)
T ss_pred EEEECCCCCCHHHHHH
Confidence 7889999999998643
No 352
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=37.20 E-value=21 Score=40.36 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=21.3
Q ss_pred HHhhcCCCeeEEEecccCCCCccccc
Q 002982 134 SGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
+.+.+|-+..+|..++||||||....
T Consensus 7 ~~~~~~~~~~~~i~apTGsGKT~~~~ 32 (357)
T TIGR03158 7 EALQSKDADIIFNTAPTGAGKTLAWL 32 (357)
T ss_pred HHHHcCCCCEEEEECCCCCCHHHHHH
Confidence 35577888888999999999998754
No 353
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=37.15 E-value=21 Score=37.15 Aligned_cols=31 Identities=23% Similarity=0.278 Sum_probs=22.7
Q ss_pred HHHHHHHhhcCC---CeeEEEecccCCCCccccc
Q 002982 129 AQHVVSGAMDGI---NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 129 ~~plV~~vl~Gy---N~tIfAYGqTGSGKTyTM~ 159 (861)
+-+-+|.++.|- ...+.-||.+|+|||....
T Consensus 8 Gi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 41 (225)
T PRK09361 8 GCKMLDELLGGGFERGTITQIYGPPGSGKTNICL 41 (225)
T ss_pred CcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 345577777543 4567889999999988764
No 354
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=37.03 E-value=31 Score=42.81 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHhh-cCCCeeEEEecccCCCCccccc
Q 002982 122 RHVYDIAAQHVVSGAM-DGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 122 eeVY~~~~~plV~~vl-~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
-.||..+ ......++ .|.|-||+.-|.+|||||.|..
T Consensus 67 PHifaiA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K 104 (674)
T cd01378 67 PHIYALA-DNAYRSMKSENENQCVIISGESGAGKTEAAK 104 (674)
T ss_pred CCHHHHH-HHHHHHHHHcCCCceEEEEcCCCCCcchHHH
Confidence 3567633 33333333 6999999999999999999873
No 355
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=36.93 E-value=28 Score=43.39 Aligned_cols=36 Identities=25% Similarity=0.416 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHh-hcCCCeeEEEecccCCCCccccc
Q 002982 123 HVYDIAAQHVVSGA-MDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 123 eVY~~~~~plV~~v-l~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.||.. +......+ -.|.|-||+.-|.+|||||.|..
T Consensus 73 Hifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTes~K 109 (717)
T cd01382 73 HVFAI-ADKAYRDMKVLKMSQSIIVSGESGAGKTENTK 109 (717)
T ss_pred cHHHH-HHHHHHHHHhcCCCCeEEEecCCCCChhHHHH
Confidence 46663 33333333 36999999999999999999873
No 356
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=36.81 E-value=20 Score=43.44 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=18.8
Q ss_pred HHHhhcCCCeeEEEecccCCCCcccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
|..+++|.| |++.++||||||.+.
T Consensus 40 ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 40 LPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 345688988 566889999999774
No 357
>CHL00176 ftsH cell division protein; Validated
Probab=36.61 E-value=14 Score=45.38 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=15.7
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..|+-||++|+|||+...
T Consensus 217 ~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358899999999999875
No 358
>PHA02624 large T antigen; Provisional
Probab=36.58 E-value=27 Score=42.80 Aligned_cols=28 Identities=18% Similarity=0.199 Sum_probs=22.2
Q ss_pred HHHHhhcCCCe--eEEEecccCCCCccccc
Q 002982 132 VVSGAMDGING--TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 132 lV~~vl~GyN~--tIfAYGqTGSGKTyTM~ 159 (861)
++..++.|... ||+-||+.|||||+-..
T Consensus 420 ~lk~~l~giPKk~~il~~GPpnTGKTtf~~ 449 (647)
T PHA02624 420 ILKLIVENVPKRRYWLFKGPVNSGKTTLAA 449 (647)
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHH
Confidence 35666777766 99999999999987653
No 359
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=36.56 E-value=33 Score=36.17 Aligned_cols=37 Identities=11% Similarity=0.041 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHhhc-CCCeeEEEecccCCCCccccc
Q 002982 123 HVYDIAAQHVVSGAMD-GINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 123 eVY~~~~~plV~~vl~-GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.+|..++.-+...+-. +..-.|.-.|++|||||+.+.
T Consensus 14 ~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~ 51 (229)
T PRK09270 14 AVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAE 51 (229)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHH
Confidence 4455454444443333 444556667999999999774
No 360
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=36.54 E-value=33 Score=42.57 Aligned_cols=37 Identities=22% Similarity=0.410 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHhh-cCCCeeEEEecccCCCCccccc
Q 002982 122 RHVYDIAAQHVVSGAM-DGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 122 eeVY~~~~~plV~~vl-~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
-.||.. +......++ .|.|-||+.-|.+|||||.|..
T Consensus 67 PHifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTes~K 104 (671)
T cd01381 67 PHIFAI-SDNAYTNMQREKKNQCIIISGESGAGKTESTK 104 (671)
T ss_pred CCHHHH-HHHHHHHHHHcCCCceEEEEcCCCCCeehHHH
Confidence 356653 333333333 6899999999999999999863
No 361
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=36.51 E-value=26 Score=40.23 Aligned_cols=47 Identities=30% Similarity=0.277 Sum_probs=28.1
Q ss_pred HHHHHhhcCCC---eeEEEecccCCCCccccccCC------ccceeeEEEEEEeccee
Q 002982 131 HVVSGAMDGIN---GTIFAYGVTSSGKTHTMHTPN------REFLLRVSYLEIYNEVV 179 (861)
Q Consensus 131 plV~~vl~GyN---~tIfAYGqTGSGKTyTM~g~~------~~f~V~vSylEIYnE~I 179 (861)
|++...+.|.- -|||+ |+||||||.-|.... .--+++.| |||-|-++
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFlsEYsLDL~~QGVnTLwgS-FEi~n~rl 316 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFLSEYSLDLFTQGVNTLWGS-FEIPNKRL 316 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEehHhhHHHHhhhhhheeee-eecchHHH
Confidence 44556666653 45654 999999998885221 11234555 47766543
No 362
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=36.34 E-value=25 Score=40.22 Aligned_cols=44 Identities=16% Similarity=0.400 Sum_probs=29.4
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.|.|+.|-+. +++- .-++..+.+-.-+.|+-+|.+|+||||.+-
T Consensus 13 ~~pf~~ivGq----~~~k----~al~~~~~~p~~~~vli~G~~GtGKs~~ar 56 (350)
T CHL00081 13 VFPFTAIVGQ----EEMK----LALILNVIDPKIGGVMIMGDRGTGKSTTIR 56 (350)
T ss_pred CCCHHHHhCh----HHHH----HHHHHhccCCCCCeEEEEcCCCCCHHHHHH
Confidence 5888887764 3333 334444444333567899999999999974
No 363
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=36.32 E-value=4e+02 Score=35.38 Aligned_cols=31 Identities=3% Similarity=-0.032 Sum_probs=17.4
Q ss_pred chhhhHHHHHHhHHhhhhhHHHHHHHHHHHH
Q 002982 604 ADNRIIQEQLNQKICECEGLQETIGFLKQQL 634 (861)
Q Consensus 604 adnrilqeql~~k~~e~~elqe~v~~l~qql 634 (861)
.+..-|+.+|.+...+..++|+..+....++
T Consensus 102 ~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~ 132 (1109)
T PRK10929 102 MSTDALEQEILQVSSQLLEKSRQAQQEQDRA 132 (1109)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3345555555555566666666665554444
No 364
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=36.20 E-value=1.6e+02 Score=33.31 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002982 557 LQVEIKKLRDEIKGKNDQIALLEKQIA 583 (861)
Q Consensus 557 ~~~~~~~l~~ei~~k~~qi~~le~~i~ 583 (861)
.+.++..++.++...+.++..++.++.
T Consensus 201 ~~~~~~~~~~~l~~~~~~l~~~~~~l~ 227 (423)
T TIGR01843 201 LERERAEAQGELGRLEAELEVLKRQID 227 (423)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 444555556666666666666555544
No 365
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=36.19 E-value=32 Score=42.79 Aligned_cols=36 Identities=28% Similarity=0.480 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHhh-cCCCeeEEEecccCCCCcccc
Q 002982 122 RHVYDIAAQHVVSGAM-DGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 122 eeVY~~~~~plV~~vl-~GyN~tIfAYGqTGSGKTyTM 158 (861)
-.||.. +......++ .|.|-||+.-|.+|||||.+.
T Consensus 72 PHiyai-A~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 72 PHIFAI-ADNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 457763 333333443 699999999999999999986
No 366
>PF13173 AAA_14: AAA domain
Probab=36.12 E-value=16 Score=34.75 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=15.6
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
-.++-+|+.|+|||+.|.
T Consensus 3 ~~~~l~G~R~vGKTtll~ 20 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLK 20 (128)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 357789999999999996
No 367
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=35.94 E-value=32 Score=42.62 Aligned_cols=37 Identities=24% Similarity=0.377 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHhh-cCCCeeEEEecccCCCCccccc
Q 002982 122 RHVYDIAAQHVVSGAM-DGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 122 eeVY~~~~~plV~~vl-~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
-.||.. +......++ .|.|-||+.-|.+|||||.|..
T Consensus 68 PHifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k 105 (677)
T cd01387 68 PHLFAI-ANLAFAKMLDAKQNQCVIISGESGSGKTEATK 105 (677)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCeehHHH
Confidence 356763 333344443 6999999999999999999873
No 368
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=35.84 E-value=8.5 Score=47.85 Aligned_cols=47 Identities=30% Similarity=0.437 Sum_probs=29.8
Q ss_pred CcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccccCCccceeeEEEEEEecceeeeccCCCCC
Q 002982 119 TTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMHTPNREFLLRVSYLEIYNEVVNDLLNPAGQ 188 (861)
Q Consensus 119 atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~g~~~~f~V~vSylEIYnE~I~DLL~p~~~ 188 (861)
..|...|+.+. ..+ .|+ .+.+-+|.|||||| |||-+.|-+.|..+++
T Consensus 201 ~~Q~~a~~~i~----~~~-~~~-~~~Ll~GvTGSGKT-----------------EvYl~~i~~~L~~Gkq 247 (730)
T COG1198 201 QEQQAAVEAIL----SSL-GGF-APFLLDGVTGSGKT-----------------EVYLEAIAKVLAQGKQ 247 (730)
T ss_pred HHHHHHHHHHH----Hhc-ccc-cceeEeCCCCCcHH-----------------HHHHHHHHHHHHcCCE
Confidence 34555555443 333 445 45566899999999 7777777777665443
No 369
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=35.62 E-value=18 Score=39.72 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.6
Q ss_pred cCCCeeEEEecccCCCCccccc
Q 002982 138 DGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 138 ~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.|+..+|+..|++|+|||..+.
T Consensus 1 ~g~~f~I~vvG~sg~GKSTliN 22 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFIN 22 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHHH
Confidence 4899999999999999998764
No 370
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=35.20 E-value=16 Score=43.46 Aligned_cols=18 Identities=39% Similarity=0.440 Sum_probs=15.7
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..|.-.|+||+|||.|+-
T Consensus 257 ~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTA 274 (484)
T ss_pred cEEEEECCCCccHHHHHH
Confidence 467788999999999985
No 371
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=35.02 E-value=4.6e+02 Score=27.50 Aligned_cols=113 Identities=21% Similarity=0.201 Sum_probs=62.7
Q ss_pred HHHHHHhHHhhhhhHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhhhhccccccccchhhhhhhhhhhhhHHHHHHHHHH
Q 002982 609 IQEQLNQKICECEGLQETIGFLKQQLNDALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDINEDSRLQVQAAEI 688 (861)
Q Consensus 609 lqeql~~k~~e~~elqe~v~~l~qql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~e~ 688 (861)
.||.-+.-...+..||-+|...|+...++-..-.. .... ..++.. ...+. +.+.++ ..--.-.
T Consensus 7 ~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~-~~~l------~~~~~~----~~~~~----e~s~dL--e~~l~rL 69 (182)
T PF15035_consen 7 YQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSA-SQVL------ESPSQR----RRSEE----EHSPDL--EEALIRL 69 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCc------Cccccc----ccccc----cCcccH--HHHHHHH
Confidence 35666666777888888888888877664221100 0000 000000 00000 111111 1113345
Q ss_pred HHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHH
Q 002982 689 EELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELA 752 (861)
Q Consensus 689 e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~ 752 (861)
|+=.|+...|.+.|+.|..+... |-..=.+|++|+.||..+=.+|..||.
T Consensus 70 eEEqqR~~~L~qvN~lLReQLEq--------------~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 70 EEEQQRSEELAQVNALLREQLEQ--------------ARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66678888888999888877543 233456777888877777777766665
No 372
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=34.99 E-value=25 Score=43.44 Aligned_cols=26 Identities=19% Similarity=0.054 Sum_probs=18.9
Q ss_pred HHhhcCCCeeEEEecccCCCCccccc
Q 002982 134 SGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.+.-.++..-++..|+||||||.+..
T Consensus 275 ~d~~~~~~~~~Ll~~~TGSGKT~va~ 300 (681)
T PRK10917 275 ADLASPKPMNRLLQGDVGSGKTVVAA 300 (681)
T ss_pred HhhhccCCceEEEECCCCCcHHHHHH
Confidence 33334555578999999999998754
No 373
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=34.83 E-value=98 Score=36.82 Aligned_cols=62 Identities=27% Similarity=0.476 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhHHHHhHHHHhcCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002982 518 DQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIA 583 (861)
Q Consensus 518 d~~dllreq~k~l~geva~~~s~lkrl~e~a~~~p~~~~~~~~~~~l~~ei~~k~~qi~~le~~i~ 583 (861)
=|+.|+++=.+-|..++.-+...|..+.- ++.+.+++.+++.|..+|+..++.|..|+.-|.
T Consensus 163 vQ~~L~~~Rl~~L~~qi~~~~~~l~~~~~----~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~ 224 (475)
T PF10359_consen 163 VQIELIQERLDELEEQIEKHEEKLGELEL----NPDDPELKSDIEELERHISSLKERIEFLENMLE 224 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccc----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999988888777644 899999999999999999999999999998554
No 374
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=34.76 E-value=9.1e+02 Score=29.31 Aligned_cols=176 Identities=23% Similarity=0.288 Sum_probs=0.0
Q ss_pred hhHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhhhhccccccccchhhhhhhhhhhhhHHHHHHHH
Q 002982 607 RIIQEQLNQKICECEGLQETIGFLKQQLNDALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDINEDSRLQVQAA 686 (861)
Q Consensus 607 rilqeql~~k~~e~~elqe~v~~l~qql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 686 (861)
+-++.+|++...+..++++.+..|+.||.+ ++..++ +.-
T Consensus 171 ~~~~~~L~~l~~~~~~~~~eld~L~~ql~E-Le~~~l----------------------------------------~~~ 209 (563)
T TIGR00634 171 LKARQQLKDRQQKEQELAQRLDFLQFQLEE-LEEADL----------------------------------------QPG 209 (563)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHhCCc----------------------------------------CCC
Q ss_pred HHHHHHHHhhHHhHhhhhhhhhhchhh---hh----h-hhhhhhhHHHHH-------HHHhhHHHHHHHhhhhhhHHHHH
Q 002982 687 EIEELNRKVTELTEAKEQLELRNQKLS---EE----S-SYAKGLASAAAV-------ELKALSEEVAKLMNHKERLTAEL 751 (861)
Q Consensus 687 e~e~lk~~~~~l~e~k~~l~~~n~kl~---ee----~-~yak~lasaaav-------elk~l~eevtkl~~qn~~l~~el 751 (861)
|-|+|+.++.+|.....=.+.-++=+. ++ . +..-.|+.|... .+..+++.+....++=+-+..+|
T Consensus 210 E~e~L~~e~~~L~n~e~i~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l 289 (563)
T TIGR00634 210 EDEALEAEQQRLSNLEKLRELSQNALAALRGDVDVQEGSLLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATREL 289 (563)
T ss_pred cHHHHHHHHHHHhCHHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhcCCCcccccccccCCcccccccccCCCCChHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHHHHHhhhhHH
Q 002982 752 AAAKSSPTQRRTSAVRNGRRDGQIKRQNQDGSSLDLKRELALSRERE----VSYEAALLEKDQQEAELQRKVEESKKREA 827 (861)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~el~~~~~re----~~le~~l~ek~~~e~el~~~~ee~k~~e~ 827 (861)
.... ..=--++...+++...|..-.+-. ..++..+..++..+.||.. ++.....-+
T Consensus 290 ~~~~-------------------~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~-l~~~~~~le 349 (563)
T TIGR00634 290 QNYL-------------------DELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQ-LDDSDESLE 349 (563)
T ss_pred HHHH-------------------HhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH-HhCCHHHHH
Q ss_pred HHHhhhhhHHHHHHHh
Q 002982 828 YLENELANMWVLVAKL 843 (861)
Q Consensus 828 ~lenelanmwvlvakl 843 (861)
.|+.+++..|--+.++
T Consensus 350 ~L~~el~~l~~~l~~~ 365 (563)
T TIGR00634 350 ALEEEVDKLEEELDKA 365 (563)
T ss_pred HHHHHHHHHHHHHHHH
No 375
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=34.75 E-value=17 Score=34.95 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.3
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
+|+.+|.+|||||+.-.
T Consensus 1 ~i~l~G~~GsGKstla~ 17 (154)
T cd00464 1 NIVLIGMMGAGKTTVGR 17 (154)
T ss_pred CEEEEcCCCCCHHHHHH
Confidence 47889999999998753
No 376
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=34.62 E-value=24 Score=40.06 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=22.5
Q ss_pred HHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 129 AQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 129 ~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
...++..++.+. +.|+-.|.||||||.+|.
T Consensus 167 ~~~~L~~~v~~~-~~ili~G~tGsGKTTll~ 196 (340)
T TIGR03819 167 VARLLRAIVAAR-LAFLISGGTGSGKTTLLS 196 (340)
T ss_pred HHHHHHHHHhCC-CeEEEECCCCCCHHHHHH
Confidence 345566666643 788889999999998874
No 377
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=34.61 E-value=2e+02 Score=30.22 Aligned_cols=28 Identities=29% Similarity=0.429 Sum_probs=17.9
Q ss_pred HHHHhhHHHHHHHhhhhhhHHHHHHhhc
Q 002982 728 VELKALSEEVAKLMNHKERLTAELAAAK 755 (861)
Q Consensus 728 velk~l~eevtkl~~qn~~l~~el~~~~ 755 (861)
..+..|-.++.++...-+.|..+|..++
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKIEEAK 96 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666777666665
No 378
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=34.50 E-value=34 Score=43.05 Aligned_cols=18 Identities=39% Similarity=0.457 Sum_probs=15.8
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
.+|.-.|+||+|||.|+.
T Consensus 186 ~Vi~lVGpnGvGKTTTia 203 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTA 203 (767)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 567789999999999985
No 379
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=34.32 E-value=1.5e+02 Score=26.60 Aligned_cols=38 Identities=29% Similarity=0.403 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhh
Q 002982 680 RLQVQAAEIEELNRKVTELTEAKEQLELRNQKLSEESS 717 (861)
Q Consensus 680 ~~~~q~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~ 717 (861)
+++.-..-|.-|+.++.+|.++|..|...|..|.+|.-
T Consensus 12 ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~ 49 (72)
T PF06005_consen 12 KIQQAVETIALLQMENEELKEKNNELKEENEELKEENE 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34443457888888888888888888855555555443
No 380
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=34.20 E-value=22 Score=44.56 Aligned_cols=111 Identities=28% Similarity=0.374 Sum_probs=58.6
Q ss_pred chhhHHHHHHHHH---Hh-hhhhhhhhhHHHHhHHHHhcCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccC
Q 002982 516 TIDQIDLLREQQK---IL-AGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHN 591 (861)
Q Consensus 516 ~~d~~dllreq~k---~l-~geva~~~s~lkrl~e~a~~~p~~~~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~ 591 (861)
++||+-+|-==+- .| -+||+....+| |-..-.++|..+. .+.|+. ||+.+++. |-.|.-.-+-++..
T Consensus 793 ~~~Q~~~lpy~i~lvsaLsv~e~~i~~~~l--l~n~~~r~~~~eE-~d~~~~--de~~~d~~----~K~~rr~~~~aa~~ 863 (1172)
T KOG0926|consen 793 TSDQHNLLPYNIALVSALSVYEVLIVAASL--LPNPLIREFEPEE-KDLIKD--DETVEDKE----LKKRRREKSKAARS 863 (1172)
T ss_pred HHHhhcchhHHHHHHHHHhccchhhhhhhc--ccccccccCCcch-hhcccc--ccccccHH----HHHHHHHHHHHHHh
Confidence 5677766643332 22 25666666664 2233334555444 455665 66664443 22333333333333
Q ss_pred ccCccc------ccccccchhhhHHHHHHhHHhhhhhHH----HHHHHHHHHHHHHHh
Q 002982 592 TMDNSE------VSQVKAADNRIIQEQLNQKICECEGLQ----ETIGFLKQQLNDALE 639 (861)
Q Consensus 592 ~~~~~~------~~~ik~adnrilqeql~~k~~e~~elq----e~v~~l~qql~~~~~ 639 (861)
.-++++ |+-+-+||.-- -+++-||-+.|. ++|..|++||.....
T Consensus 864 rf~~l~sd~l~Ll~Av~a~ey~~----~~~rfc~~ngLr~Kam~Ev~KLR~QL~~lv~ 917 (1172)
T KOG0926|consen 864 RFSNLDSDALVLLSAVSAAEYAE----NGMRFCEANGLRLKAMEEVRKLRKQLTNLVN 917 (1172)
T ss_pred hhccCCccHHHHHHHHHHHHhhh----hcchhHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 334444 12255555432 235677777776 568899999988765
No 381
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=34.10 E-value=35 Score=42.43 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHhh-cCCCeeEEEecccCCCCccccc
Q 002982 122 RHVYDIAAQHVVSGAM-DGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 122 eeVY~~~~~plV~~vl-~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
-.||.. +......++ .|.|-||+.-|.+|||||.+..
T Consensus 67 PHifai-A~~Ay~~m~~~~~~QsIiiSGESGaGKTes~K 104 (691)
T cd01380 67 PHIFAI-AEEAYKQMTRDEKNQSIIVSGESGAGKTVSAK 104 (691)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCchHHHH
Confidence 356653 333333333 7999999999999999999873
No 382
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=33.99 E-value=30 Score=41.27 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=18.3
Q ss_pred HHHhhcCCCeeEEEecccCCCCcccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
+..++.|.| +++..+||||||.+.
T Consensus 152 ip~il~g~d--viv~ApTGSGKTlay 175 (518)
T PLN00206 152 IPAALSGRS--LLVSADTGSGKTASF 175 (518)
T ss_pred HHHHhcCCC--EEEEecCCCCccHHH
Confidence 455678876 567789999999764
No 383
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=33.91 E-value=17 Score=42.03 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=15.7
Q ss_pred CeeEEEecccCCCCccccc
Q 002982 141 NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (861)
+--++.+|.||||||..|.
T Consensus 42 ~~h~~i~g~tGsGKt~~i~ 60 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQIR 60 (410)
T ss_pred hccEEEEcCCCCCHHHHHH
Confidence 3457889999999999873
No 384
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.61 E-value=2.2e+02 Score=36.07 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=17.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHh
Q 002982 561 IKKLRDEIKGKNDQIALLEKQIAD 584 (861)
Q Consensus 561 ~~~l~~ei~~k~~qi~~le~~i~~ 584 (861)
-+.|+-|.+..+.++..|+.||.+
T Consensus 439 ~~ql~~eletLn~k~qqls~kl~D 462 (1118)
T KOG1029|consen 439 KKQLQQELETLNFKLQQLSGKLQD 462 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Confidence 455666677777777788888875
No 385
>CHL00181 cbbX CbbX; Provisional
Probab=33.57 E-value=35 Score=37.68 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=13.9
Q ss_pred EEEecccCCCCccccc
Q 002982 144 IFAYGVTSSGKTHTMH 159 (861)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (861)
|+-||++|+|||+...
T Consensus 62 ill~G~pGtGKT~lAr 77 (287)
T CHL00181 62 MSFTGSPGTGKTTVAL 77 (287)
T ss_pred EEEECCCCCCHHHHHH
Confidence 6779999999999864
No 386
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=33.49 E-value=81 Score=37.67 Aligned_cols=33 Identities=15% Similarity=0.171 Sum_probs=24.8
Q ss_pred hhHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHh
Q 002982 607 RIIQEQLNQKICECEGLQETIGFLKQQLNDALE 639 (861)
Q Consensus 607 rilqeql~~k~~e~~elqe~v~~l~qql~~~~~ 639 (861)
.-|..++..-..+..+|++++..|+++|..+..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 141 ERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 444555566667788899999999999987664
No 387
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=33.48 E-value=19 Score=36.17 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=13.6
Q ss_pred EEEecccCCCCccccc
Q 002982 144 IFAYGVTSSGKTHTMH 159 (861)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (861)
|+.+|.+|||||+...
T Consensus 2 I~i~G~pGsGKst~a~ 17 (194)
T cd01428 2 ILLLGPPGSGKGTQAE 17 (194)
T ss_pred EEEECCCCCCHHHHHH
Confidence 7889999999997654
No 388
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=33.26 E-value=20 Score=43.28 Aligned_cols=17 Identities=41% Similarity=0.409 Sum_probs=14.9
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.||..|+|+|||||--.
T Consensus 193 Ii~H~GPTNSGKTy~AL 209 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRAL 209 (700)
T ss_pred EEEEeCCCCCchhHHHH
Confidence 48999999999999754
No 389
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=33.23 E-value=1.3e+02 Score=35.27 Aligned_cols=67 Identities=24% Similarity=0.402 Sum_probs=51.2
Q ss_pred ccchhhHHHHHHHHHHhhhhhhhhhhHHHHhHHHHhcCC-ChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccC
Q 002982 514 IKTIDQIDLLREQQKILAGEVALHSSALKRLSEEAARNP-QKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHN 591 (861)
Q Consensus 514 ~~~~d~~dllreq~k~l~geva~~~s~lkrl~e~a~~~p-~~~~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~ 591 (861)
.+..-++|-||.+.+-++-+|+- +| .+. +-+.+..+++.|+.+|++...++..+|.++.+-+..=|+
T Consensus 38 r~l~~~~~~lr~~rn~~sk~i~~----~~-------~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN 105 (425)
T PRK05431 38 RELQTELEELQAERNALSKEIGQ----AK-------RKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPN 105 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----Hh-------hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34566788889999988888863 11 122 345688899999999999999999999999887666553
No 390
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=33.21 E-value=30 Score=35.82 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=22.2
Q ss_pred HHHHHHhhc-CC--CeeEEEecccCCCCccccc
Q 002982 130 QHVVSGAMD-GI--NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 130 ~plV~~vl~-Gy--N~tIfAYGqTGSGKTyTM~ 159 (861)
-+-+|.++. |+ ...+.-||++|+|||..+.
T Consensus 5 ~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~ 37 (226)
T cd01393 5 SKALDELLGGGIPTGRITEIFGEFGSGKTQLCL 37 (226)
T ss_pred cHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHH
Confidence 456777775 43 4567779999999998775
No 391
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=33.18 E-value=4.9e+02 Score=25.76 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=17.2
Q ss_pred hhhhHHHHHHHHhhHHHHHHHhh
Q 002982 720 KGLASAAAVELKALSEEVAKLMN 742 (861)
Q Consensus 720 k~lasaaavelk~l~eevtkl~~ 742 (861)
.......++|+|.---|+.||-.
T Consensus 125 ~~~~tq~~~e~rkke~E~~kLk~ 147 (151)
T PF11559_consen 125 QQRKTQYEHELRKKEREIEKLKE 147 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888888888754
No 392
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=33.16 E-value=22 Score=40.39 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=15.1
Q ss_pred EEEecccCCCCccccccC
Q 002982 144 IFAYGVTSSGKTHTMHTP 161 (861)
Q Consensus 144 IfAYGqTGSGKTyTM~g~ 161 (861)
++.+|.||||||+++.-|
T Consensus 2 ~lv~g~tGsGKt~~~viP 19 (384)
T cd01126 2 VLVFAPTRSGKGVGFVIP 19 (384)
T ss_pred eeEecCCCCCCccEEEcc
Confidence 578999999999987644
No 393
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=33.09 E-value=28 Score=39.49 Aligned_cols=31 Identities=16% Similarity=0.315 Sum_probs=24.0
Q ss_pred HHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 129 AQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 129 ~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
..-++-.+++..-+-|+-.|.+|+|||..+.
T Consensus 13 ~~al~~~~~~~~~g~vli~G~~G~gKttl~r 43 (337)
T TIGR02030 13 KLALLLNVIDPKIGGVMVMGDRGTGKSTAVR 43 (337)
T ss_pred HHHHHHHhcCCCCCeEEEEcCCCCCHHHHHH
Confidence 3455566677666778899999999998875
No 394
>PRK07261 topology modulation protein; Provisional
Probab=33.08 E-value=19 Score=36.42 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=13.7
Q ss_pred EEEecccCCCCccccc
Q 002982 144 IFAYGVTSSGKTHTMH 159 (861)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (861)
|+-.|.+|||||+-..
T Consensus 3 i~i~G~~GsGKSTla~ 18 (171)
T PRK07261 3 IAIIGYSGSGKSTLAR 18 (171)
T ss_pred EEEEcCCCCCHHHHHH
Confidence 6778999999998764
No 395
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=33.07 E-value=52 Score=34.99 Aligned_cols=49 Identities=22% Similarity=0.335 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhh
Q 002982 685 AAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHK 744 (861)
Q Consensus 685 ~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn 744 (861)
-.|+++|..++..+.|+...|.-.|..|.|-+-.|+-| |+=+.+||.+.
T Consensus 124 L~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~l-----------a~~ie~l~~~~ 172 (200)
T PF07412_consen 124 LEENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQYL-----------AEVIERLTGQE 172 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-----------HHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhccC
Confidence 34888898888888888888888888877765555554 44556666554
No 396
>PRK06851 hypothetical protein; Provisional
Probab=32.96 E-value=31 Score=39.79 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=23.5
Q ss_pred HHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 132 VVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
+.+.+++|.+-.++-.|.+|+|||++|.
T Consensus 21 ~~~~~~~~~~~~~il~G~pGtGKStl~~ 48 (367)
T PRK06851 21 LYDSIIDGANRIFILKGGPGTGKSTLMK 48 (367)
T ss_pred hhhhhccccceEEEEECCCCCCHHHHHH
Confidence 4455667888889999999999999996
No 397
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=32.80 E-value=36 Score=40.01 Aligned_cols=18 Identities=44% Similarity=0.455 Sum_probs=16.1
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..|+-.|++|+|||+|+.
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 578889999999999986
No 398
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=32.79 E-value=19 Score=31.25 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=12.5
Q ss_pred EEEecccCCCCcccc
Q 002982 144 IFAYGVTSSGKTHTM 158 (861)
Q Consensus 144 IfAYGqTGSGKTyTM 158 (861)
.+-+|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999776
No 399
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=32.65 E-value=24 Score=40.61 Aligned_cols=21 Identities=38% Similarity=0.509 Sum_probs=19.2
Q ss_pred cCCCeeEEEecccCCCCcccc
Q 002982 138 DGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 138 ~GyN~tIfAYGqTGSGKTyTM 158 (861)
.|+.-+|+..|+.|+|||..+
T Consensus 20 ~Gi~f~im~~G~sG~GKttfi 40 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFI 40 (373)
T ss_pred cCCceEEEEecCCCCchhHHH
Confidence 599999999999999999755
No 400
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=32.43 E-value=21 Score=42.39 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=17.0
Q ss_pred hhcCCCeeEEEecccCCCCccccc
Q 002982 136 AMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 136 vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
+.+|.+ ++|++|||||||+...
T Consensus 108 i~~Grd--l~acAqTGsGKT~aFL 129 (482)
T KOG0335|consen 108 ISGGRD--LMACAQTGSGKTAAFL 129 (482)
T ss_pred eecCCc--eEEEccCCCcchHHHH
Confidence 344544 4899999999999875
No 401
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=32.41 E-value=20 Score=41.85 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=19.5
Q ss_pred HHHHHhhcCCCeeEEEecccCCCCcccc
Q 002982 131 HVVSGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 131 plV~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
++-.-+-.|--...+-||++|+|||..-
T Consensus 38 ~lrr~v~~~~l~SmIl~GPPG~GKTTlA 65 (436)
T COG2256 38 PLRRAVEAGHLHSMILWGPPGTGKTTLA 65 (436)
T ss_pred hHHHHHhcCCCceeEEECCCCCCHHHHH
Confidence 3333334566677788999999999753
No 402
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=32.36 E-value=18 Score=45.03 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=16.0
Q ss_pred CeeEEEecccCCCCccccc
Q 002982 141 NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (861)
|..++..|.||||||++|.
T Consensus 430 n~n~~I~G~tGsGKS~~~~ 448 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFMQ 448 (797)
T ss_pred ccceEEEcCCCCCHHHHHH
Confidence 4457788999999999985
No 403
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=32.35 E-value=24 Score=41.26 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=19.8
Q ss_pred HHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 131 HVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 131 plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
..+..+++|.|.. ...+||||||.+..
T Consensus 116 ~ai~~~~~G~dvi--~~apTGSGKTlay~ 142 (475)
T PRK01297 116 QVLGYTLAGHDAI--GRAQTGTGKTAAFL 142 (475)
T ss_pred HHHHHHhCCCCEE--EECCCCChHHHHHH
Confidence 3455678998865 45699999997753
No 404
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.12 E-value=35 Score=38.77 Aligned_cols=20 Identities=25% Similarity=0.312 Sum_probs=16.4
Q ss_pred CCeeEEEecccCCCCccccc
Q 002982 140 INGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM~ 159 (861)
..-.++-||+.|+|||++..
T Consensus 37 ~~h~~L~~Gp~G~GKTtla~ 56 (363)
T PRK14961 37 IHHAWLLSGTRGVGKTTIAR 56 (363)
T ss_pred CCeEEEEecCCCCCHHHHHH
Confidence 44567889999999999874
No 405
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=32.12 E-value=19 Score=39.68 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=14.0
Q ss_pred eEEEecccCCCCcccc
Q 002982 143 TIFAYGVTSSGKTHTM 158 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM 158 (861)
-|+-||++|+|||+.-
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 5788999999999875
No 406
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=32.11 E-value=25 Score=43.39 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=28.3
Q ss_pred EeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCcccc
Q 002982 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
+.|+.+++....-..+.+.+ .. +...+..|+-+|.+|||||+.-
T Consensus 373 ~~~~~liG~S~~~~~~~~~~-----~~-~a~~~~pVLI~GE~GTGK~~lA 416 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQV-----EM-VAQSDSTVLILGETGTGKELIA 416 (686)
T ss_pred ccccceeecCHHHHHHHHHH-----HH-HhCCCCCEEEECCCCcCHHHHH
Confidence 56666666544333333322 11 3466788999999999999764
No 407
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=31.77 E-value=27 Score=39.63 Aligned_cols=19 Identities=16% Similarity=0.436 Sum_probs=16.4
Q ss_pred CeeEEEecccCCCCccccc
Q 002982 141 NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (861)
+.-|+-+|++|+|||....
T Consensus 64 ~~~ilL~G~pGtGKTtla~ 82 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIE 82 (327)
T ss_pred CCcEEEEeCCCChHHHHHH
Confidence 4568889999999999876
No 408
>PRK08118 topology modulation protein; Reviewed
Probab=31.67 E-value=21 Score=36.09 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=12.8
Q ss_pred EEEecccCCCCcccc
Q 002982 144 IFAYGVTSSGKTHTM 158 (861)
Q Consensus 144 IfAYGqTGSGKTyTM 158 (861)
|+-.|++|||||+..
T Consensus 4 I~I~G~~GsGKSTla 18 (167)
T PRK08118 4 IILIGSGGSGKSTLA 18 (167)
T ss_pred EEEECCCCCCHHHHH
Confidence 778999999999654
No 409
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=31.66 E-value=6e+02 Score=28.84 Aligned_cols=67 Identities=24% Similarity=0.242 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHH----HHHhhHHHHHHHhhhhhhHHHHHH
Q 002982 686 AEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAV----ELKALSEEVAKLMNHKERLTAELA 752 (861)
Q Consensus 686 ~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaav----elk~l~eevtkl~~qn~~l~~el~ 752 (861)
.+-+.|......|.+....|..+.+.|-.|..-.+.+.+-..- ||+.|-+++.++-.+++...+++.
T Consensus 158 ~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~ 228 (312)
T smart00787 158 EDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLE 228 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666777777777888888888887777777666533 788887777777666655544443
No 410
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=31.60 E-value=31 Score=35.64 Aligned_cols=29 Identities=21% Similarity=0.363 Sum_probs=21.6
Q ss_pred HHHHHhhc-CCC--eeEEEecccCCCCccccc
Q 002982 131 HVVSGAMD-GIN--GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 131 plV~~vl~-GyN--~tIfAYGqTGSGKTyTM~ 159 (861)
+-+|.++. |+. ..+..+|.+|||||....
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 37 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAI 37 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHH
Confidence 45677775 544 447789999999998764
No 411
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=31.54 E-value=2.3e+02 Score=33.86 Aligned_cols=41 Identities=34% Similarity=0.404 Sum_probs=31.7
Q ss_pred hhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhc
Q 002982 714 EESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAK 755 (861)
Q Consensus 714 ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~~~~ 755 (861)
|..+.+--|+--.| ++|.|-.|+.+|..||++|.+|-...|
T Consensus 53 egDTP~DTlrTlva-~~k~~r~~~~~l~~~N~~l~~eN~~L~ 93 (472)
T TIGR03752 53 EGDTPADTLRTLVA-EVKELRKRLAKLISENEALKAENERLQ 93 (472)
T ss_pred CCCCccchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554443 789999999999999999999988666
No 412
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=31.50 E-value=24 Score=41.48 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=17.5
Q ss_pred CCCeeEEEecccCCCCccccc
Q 002982 139 GINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 139 GyN~tIfAYGqTGSGKTyTM~ 159 (861)
+....|+-||++|+|||+.--
T Consensus 274 ~~~~giLl~GpPGtGKT~lAk 294 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAK 294 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHH
Confidence 455579999999999999864
No 413
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=31.50 E-value=17 Score=35.75 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=11.9
Q ss_pred EEEecccCCCCcccc
Q 002982 144 IFAYGVTSSGKTHTM 158 (861)
Q Consensus 144 IfAYGqTGSGKTyTM 158 (861)
|+-.|++|||||+.-
T Consensus 1 i~l~G~~GsGKSTla 15 (163)
T TIGR01313 1 FVLMGVAGSGKSTIA 15 (163)
T ss_pred CEEECCCCCCHHHHH
Confidence 356799999998664
No 414
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=31.28 E-value=4.5e+02 Score=24.70 Aligned_cols=75 Identities=19% Similarity=0.258 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHhhHHhHhhhh-hhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhc
Q 002982 681 LQVQAAEIEELNRKVTELTEAKEQ-LELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAK 755 (861)
Q Consensus 681 ~~~q~~e~e~lk~~~~~l~e~k~~-l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~~~~ 755 (861)
+...=.|+++|-.+.......-.. ..+--..|.=+--|+--|+..---++..|...+.+|-.+|+.|..+|.+.|
T Consensus 32 v~~kLneLd~Li~eA~~r~~~~~~~~~~~~~~l~P~~~i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 32 VVEKLNELDKLIEEAKERKNSGEREKPVWRHSLTPEEDIRAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHhHhccccCCCCCCCCCChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444555554444433322111 234445677777888889999999999999999999999999999999776
No 415
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=31.17 E-value=20 Score=39.70 Aligned_cols=13 Identities=46% Similarity=0.670 Sum_probs=11.9
Q ss_pred ecccCCCCccccc
Q 002982 147 YGVTSSGKTHTMH 159 (861)
Q Consensus 147 YGqTGSGKTyTM~ 159 (861)
.|++|||||+||.
T Consensus 33 iGpSGsGKTTtLk 45 (309)
T COG1125 33 IGPSGSGKTTTLK 45 (309)
T ss_pred ECCCCCcHHHHHH
Confidence 5999999999985
No 416
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=31.15 E-value=31 Score=41.71 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=19.5
Q ss_pred HHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 132 VVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
+|..++.|.| +++..+||+|||.+..
T Consensus 21 ~i~~il~g~d--vlv~~PTG~GKTl~y~ 46 (591)
T TIGR01389 21 IISHVLDGRD--VLVVMPTGGGKSLCYQ 46 (591)
T ss_pred HHHHHHcCCC--EEEEcCCCccHhHHHH
Confidence 3445678887 4566799999998854
No 417
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=31.04 E-value=1.1e+03 Score=29.36 Aligned_cols=177 Identities=16% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHhHHhhh----hhHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhhhhccccccccchhhhhhhhhhhhhHHHHHH
Q 002982 609 IQEQLNQKICEC----EGLQETIGFLKQQLNDALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDINEDSRLQVQ 684 (861)
Q Consensus 609 lqeql~~k~~e~----~elqe~v~~l~qql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 684 (861)
++++++.|.... .-|++.+..|+++|..+-.. .+.|............ ..-
T Consensus 181 ~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~---------l~~fk~~~~l~~~~~~----------------~~~ 235 (754)
T TIGR01005 181 IAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAE---------VAAYRAQSDLLMGNNA----------------TLA 235 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHcCCcccCCc----------------cch
Q ss_pred HHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHH--hhHHHHHHHhhhhhhHHHHHHhhcCCCcccc
Q 002982 685 AAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELK--ALSEEVAKLMNHKERLTAELAAAKSSPTQRR 762 (861)
Q Consensus 685 ~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk--~l~eevtkl~~qn~~l~~el~~~~~~~~~~~ 762 (861)
..++.+|.+++.....+....+.+.+.|.+...=.+..+.++++-.- .+.-.+..|..|=..|..+++...
T Consensus 236 ~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~------- 308 (754)
T TIGR01005 236 TQQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLS------- 308 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHH-------
Q ss_pred cccccCCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHhhhhHHHHHhhhhhH
Q 002982 763 TSAVRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSYEAALLE-KDQQEAELQRKVEESKKREAYLENELANM 836 (861)
Q Consensus 763 ~~~~~~~r~~~~~~~~~~~~~~~~~~~el~~~~~re~~le~~l~e-k~~~e~el~~~~ee~k~~e~~lenelanm 836 (861)
.+=.+....+.+++.++. .|++.+.+ ..+.-.-++..++.+++++..|+..|+.+
T Consensus 309 ------------~~y~~~hP~v~~l~~qi~-------~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~ 364 (754)
T TIGR01005 309 ------------TTMLANHPRVVAAKSSLA-------DLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQL 364 (754)
T ss_pred ------------HhhCCCCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 418
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=31.02 E-value=6.6e+02 Score=26.57 Aligned_cols=86 Identities=29% Similarity=0.397 Sum_probs=59.5
Q ss_pred hhhhhhhhhHHHHhHHHHh--cCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccCcccccccccchhhh
Q 002982 531 AGEVALHSSALKRLSEEAA--RNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQVKAADNRI 608 (861)
Q Consensus 531 ~geva~~~s~lkrl~e~a~--~~p~~~~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~ik~adnri 608 (861)
-+|+-=-...|++|-.-+. +=|+-+.++-+...++.++.++...|..||+++--. |.-
T Consensus 95 ~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~--------------------~k~ 154 (194)
T PF15619_consen 95 DEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELE--------------------NKS 154 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------hhH
Confidence 3445445566667665554 557778888999999999999999999999976521 122
Q ss_pred HHHHHHhH-------HhhhhhHHHHHHHHHHHHHH
Q 002982 609 IQEQLNQK-------ICECEGLQETIGFLKQQLND 636 (861)
Q Consensus 609 lqeql~~k-------~~e~~elqe~v~~l~qql~~ 636 (861)
++-||+.. ..+|..|+++|..|+++|..
T Consensus 155 ~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 155 FRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333332 36788888888888888754
No 419
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=31.02 E-value=39 Score=36.84 Aligned_cols=21 Identities=29% Similarity=0.197 Sum_probs=18.6
Q ss_pred CCCeeEEEecccCCCCccccc
Q 002982 139 GINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 139 GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.-+.+|.-||+=|||||+.|-
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~ 38 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLN 38 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 567889999999999999984
No 420
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=31.00 E-value=6.2e+02 Score=28.48 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002982 555 EQLQVEIKKLRDEIKGKNDQIALLEKQ 581 (861)
Q Consensus 555 ~~~~~~~~~l~~ei~~k~~qi~~le~~ 581 (861)
..|+.|..+|+.|-+.++-||.+||.-
T Consensus 21 qelE~QldkLkKE~qQrQfQleSlEAa 47 (307)
T PF10481_consen 21 QELEQQLDKLKKERQQRQFQLESLEAA 47 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 457789999999999999999999853
No 421
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=30.92 E-value=25 Score=42.07 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=31.4
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.+.||.+++....-..+.+.+ .. +...+..|+-+|.+||||++.-.
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~-----~~-~A~~~~pvlI~GE~GtGK~~lA~ 245 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQA-----RK-LAMLDAPLLITGDTGTGKDLLAY 245 (520)
T ss_pred cccccceeECCHHHHHHHHHH-----HH-HhCCCCCEEEECCCCccHHHHHH
Confidence 578999887655433344322 11 23467889999999999998763
No 422
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=30.89 E-value=38 Score=34.67 Aligned_cols=26 Identities=19% Similarity=0.334 Sum_probs=19.2
Q ss_pred HHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 132 VVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
-+...+.| -+++-.|++|.|||..+-
T Consensus 28 ~l~~~l~~--k~~vl~G~SGvGKSSLiN 53 (161)
T PF03193_consen 28 ELKELLKG--KTSVLLGQSGVGKSSLIN 53 (161)
T ss_dssp HHHHHHTT--SEEEEECSTTSSHHHHHH
T ss_pred HHHHHhcC--CEEEEECCCCCCHHHHHH
Confidence 34556777 455667999999998874
No 423
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=30.76 E-value=43 Score=41.45 Aligned_cols=36 Identities=28% Similarity=0.432 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHhh-cCCCeeEEEecccCCCCccccc
Q 002982 123 HVYDIAAQHVVSGAM-DGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 123 eVY~~~~~plV~~vl-~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.||.. +......++ .|.|-||+.-|.+|||||.|+.
T Consensus 68 Hifav-A~~Ay~~m~~~~~~QsIiisGESGsGKTet~K 104 (653)
T cd01379 68 HIFAI-ADAAYQSLVTYNQDQCIVISGESGSGKTESAH 104 (653)
T ss_pred cHHHH-HHHHHHHHHhcCCCceEEEecCCCCCchHHHH
Confidence 46653 223333333 5899999999999999999974
No 424
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=30.69 E-value=22 Score=33.68 Aligned_cols=16 Identities=31% Similarity=0.356 Sum_probs=13.2
Q ss_pred EEEecccCCCCccccc
Q 002982 144 IFAYGVTSSGKTHTMH 159 (861)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (861)
|+-.|++|||||..-.
T Consensus 2 I~i~G~~GsGKst~a~ 17 (147)
T cd02020 2 IAIDGPAGSGKSTVAK 17 (147)
T ss_pred EEEECCCCCCHHHHHH
Confidence 6778999999998653
No 425
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=30.65 E-value=1.2e+03 Score=29.53 Aligned_cols=284 Identities=21% Similarity=0.263 Sum_probs=125.5
Q ss_pred CCCCCCCccccchh----hHHHHHHHHHHhhhhh------hhhhhHHHHhHHHHhcCCChHHHHHH-----HHHHHHHHH
Q 002982 505 LGQETPSTSIKTID----QIDLLREQQKILAGEV------ALHSSALKRLSEEAARNPQKEQLQVE-----IKKLRDEIK 569 (861)
Q Consensus 505 ~~~~~~~~~~~~~d----~~dllreq~k~l~gev------a~~~s~lkrl~e~a~~~p~~~~~~~~-----~~~l~~ei~ 569 (861)
+++++.++...-+| ..|-+.+|+|||-.-+ ++..+-=|-|-|++-.|-.++-..+. +.-|.+|
T Consensus 329 s~Rs~s~~n~~~~d~~q~eLdK~~~~i~~Ln~~leaReaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e-- 406 (961)
T KOG4673|consen 329 SQRSSSATNVSDSDDVQLELDKTKKEIKMLNNALEAREAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREE-- 406 (961)
T ss_pred ccCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHH--
Confidence 34444444444444 3678899999986422 22333334444444444333322111 1111222
Q ss_pred hHHHHHHHHHHHHHhhhhcccCccCccccccccc-chhhhHHHHHHhHHhhhhhHHHHHHHH-HHHHHHHHhhcCCCCcc
Q 002982 570 GKNDQIALLEKQIADSIMTSHNTMDNSEVSQVKA-ADNRIIQEQLNQKICECEGLQETIGFL-KQQLNDALELRNFSPLA 647 (861)
Q Consensus 570 ~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~ik~-adnrilqeql~~k~~e~~elqe~v~~l-~qql~~~~~~~~~~~~~ 647 (861)
--+.|+.||+..--++---. +-..+|--||- --|+++-+-|-+|.--++.|+++=..| |+||.+-.--
T Consensus 407 -~~QRva~lEkKvqa~~kERD--alr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iI------- 476 (961)
T KOG4673|consen 407 -YHQRVATLEKKVQALTKERD--ALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAII------- 476 (961)
T ss_pred -HHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------
Confidence 22445666665443322111 01122222332 225666677777776677777655444 5565441100
Q ss_pred hhhhhhhhhccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhHHhHhhhhhhhhhchhhhh-----hhhhhhh
Q 002982 648 SYSQRFAEAKSLNGEHQIDKEIALLKDINEDSRLQVQAAEIEELNRKVTELTEAKEQLELRNQKLSEE-----SSYAKGL 722 (861)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee-----~~yak~l 722 (861)
+.-..+ +++.....+.+++ ++..-+.|.+.||+=+.--.|-..++.---.|+.-| -.|+.-=
T Consensus 477 ----kKLRAk--------~ke~etl~~K~ge-~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr 543 (961)
T KOG4673|consen 477 ----KKLRAK--------IKEAETLEEKKGE-LITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSR 543 (961)
T ss_pred ----HHHHHH--------hhhhhHHHHHhhh-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 000000 1111111112222 122234555666654443333333333333333333 3466656
Q ss_pred hHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcCCCcccccccccCCcccccccccCCCCChHHHHHHHHHHHHHHHHHH
Q 002982 723 ASAAAVELKALSEEVAKLMNHKERLTAELAAAKSSPTQRRTSAVRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSYE 802 (861)
Q Consensus 723 asaaavelk~l~eevtkl~~qn~~l~~el~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~el~~~~~re~~le 802 (861)
|-+++.|-+++|++-| |--+-++|--.--+- ...-|..+. +-+.-++|||.-|+...|--+.=|
T Consensus 544 ~~~~~le~~~~a~qat-----~d~a~~Dlqk~nrlk--------Qdear~~~~---~lvqqv~dLR~~L~~~Eq~aarrE 607 (961)
T KOG4673|consen 544 ALAAALEAQALAEQAT-----NDEARSDLQKENRLK--------QDEARERES---MLVQQVEDLRQTLSKKEQQAARRE 607 (961)
T ss_pred HHHHHHHHHHHHHHHh-----hhhhhhhHHHHhhhh--------hhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888877 444444431110000 000000000 111245677776664443333334
Q ss_pred HHHhhHHHHHHHHHHHHHHhhhhHHHHHhh
Q 002982 803 AALLEKDQQEAELQRKVEESKKREAYLENE 832 (861)
Q Consensus 803 ~~l~ek~~~e~el~~~~ee~k~~e~~lene 832 (861)
+.+-+. -.+|++++++|..|-..|=-+
T Consensus 608 d~~R~E---i~~LqrRlqaaE~R~eel~q~ 634 (961)
T KOG4673|consen 608 DMFRGE---IEDLQRRLQAAERRCEELIQQ 634 (961)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHhh
Confidence 443322 257888888888776665433
No 426
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=30.49 E-value=21 Score=35.60 Aligned_cols=17 Identities=24% Similarity=0.511 Sum_probs=14.7
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.|+-.|++|||||..+.
T Consensus 3 ~~~i~G~sGsGKttl~~ 19 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLD 19 (179)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56788999999999984
No 427
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=30.14 E-value=20 Score=45.66 Aligned_cols=19 Identities=32% Similarity=0.567 Sum_probs=16.8
Q ss_pred CeeEEEecccCCCCccccc
Q 002982 141 NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (861)
|+-.+.+|+||||||++|.
T Consensus 475 n~n~~I~G~TGSGKS~l~~ 493 (893)
T TIGR03744 475 NAHLLILGPTGAGKSATLT 493 (893)
T ss_pred cccEEEECCCCCCHHHHHH
Confidence 6777888999999999984
No 428
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=30.11 E-value=41 Score=29.12 Aligned_cols=27 Identities=41% Similarity=0.551 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhHHhHhhhhhhhhhchh
Q 002982 686 AEIEELNRKVTELTEAKEQLELRNQKL 712 (861)
Q Consensus 686 ~e~e~lk~~~~~l~e~k~~l~~~n~kl 712 (861)
.|.|-||....+|.+.+++|+..|.-|
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~L 40 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLL 40 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477889999999988888888877654
No 429
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.08 E-value=32 Score=42.45 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=15.1
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.++-||++|+|||.++.
T Consensus 112 illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIK 128 (637)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999999985
No 430
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=29.91 E-value=23 Score=41.47 Aligned_cols=19 Identities=37% Similarity=0.385 Sum_probs=16.3
Q ss_pred CeeEEEecccCCCCccccc
Q 002982 141 NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (861)
+..|...|+||+|||.|+-
T Consensus 191 g~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTA 209 (420)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4567789999999999995
No 431
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=29.91 E-value=3.5e+02 Score=32.47 Aligned_cols=89 Identities=20% Similarity=0.246 Sum_probs=62.7
Q ss_pred cccchhhHHHHHHHHHHhhhhhhhhhhHHHHhHHHHhcCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCc
Q 002982 513 SIKTIDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNT 592 (861)
Q Consensus 513 ~~~~~d~~dllreq~k~l~geva~~~s~lkrl~e~a~~~p~~~~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~ 592 (861)
|-|..|=|--|.-|+|.+-.+++ .+..|-+.|+.|.+..+++-..+.+||-..+.+..
T Consensus 54 gDTP~DTlrTlva~~k~~r~~~~--------------------~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~-- 111 (472)
T TIGR03752 54 GDTPADTLRTLVAEVKELRKRLA--------------------KLISENEALKAENERLQKREQSIDQQIQQAVQSET-- 111 (472)
T ss_pred CCCccchHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh--
Confidence 34456777788888888776654 33345667788888888888889999998887744
Q ss_pred cCcccccccccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHHHHH
Q 002982 593 MDNSEVSQVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDA 637 (861)
Q Consensus 593 ~~~~~~~~ik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~ 637 (861)
.-++++.++=..|...+|..+..|.+||...
T Consensus 112 --------------~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~ 142 (472)
T TIGR03752 112 --------------QELTKEIEQLKSERQQLQGLIDQLQRRLAGV 142 (472)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444444556677888899999998653
No 432
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=29.75 E-value=54 Score=36.14 Aligned_cols=29 Identities=21% Similarity=0.383 Sum_probs=22.0
Q ss_pred HHHHHHhh-cCCCeeEEEecccCCCCcccc
Q 002982 130 QHVVSGAM-DGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 130 ~plV~~vl-~GyN~tIfAYGqTGSGKTyTM 158 (861)
..+=..++ .||...|+..||+|.|||..+
T Consensus 34 ~Qm~~k~mk~GF~FNIMVVgqSglgkstli 63 (336)
T KOG1547|consen 34 EQMRKKTMKTGFDFNIMVVGQSGLGKSTLI 63 (336)
T ss_pred HHHHHHHHhccCceEEEEEecCCCCchhhH
Confidence 33433333 699999999999999998644
No 433
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=29.73 E-value=28 Score=41.99 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=18.5
Q ss_pred hcCCCeeEEEecccCCCCcccc
Q 002982 137 MDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 137 l~GyN~tIfAYGqTGSGKTyTM 158 (861)
+...+..|+-+|.+||||++.-
T Consensus 238 ~A~s~~pVLI~GE~GTGKe~~A 259 (538)
T PRK15424 238 YARSSAAVLIQGETGTGKELAA 259 (538)
T ss_pred HhCCCCcEEEECCCCCCHHHHH
Confidence 4567889999999999998764
No 434
>CHL00195 ycf46 Ycf46; Provisional
Probab=29.60 E-value=22 Score=42.34 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=16.0
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
-.|+-||++|+|||++..
T Consensus 260 kGILL~GPpGTGKTllAk 277 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTAK 277 (489)
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 569999999999998875
No 435
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=29.57 E-value=45 Score=35.54 Aligned_cols=31 Identities=16% Similarity=0.154 Sum_probs=23.3
Q ss_pred HHHHHHHhhc--CCCeeEEEecccCCCCccccc
Q 002982 129 AQHVVSGAMD--GINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 129 ~~plV~~vl~--GyN~tIfAYGqTGSGKTyTM~ 159 (861)
+..+++.+.+ .-...|.-||..|.|||....
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~ 37 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLAR 37 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceeee
Confidence 3455555555 667888999999999998774
No 436
>PRK06696 uridine kinase; Validated
Probab=29.54 E-value=48 Score=34.80 Aligned_cols=22 Identities=27% Similarity=0.141 Sum_probs=16.9
Q ss_pred cCCCeeEEEecccCCCCccccc
Q 002982 138 DGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 138 ~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.+....|.-.|.+|||||+...
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~ 40 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFAD 40 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHH
Confidence 3555667778999999998753
No 437
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=29.48 E-value=7.4e+02 Score=26.64 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=18.6
Q ss_pred HhhHHHHHHHhhhhhhHHHHHHhh
Q 002982 731 KALSEEVAKLMNHKERLTAELAAA 754 (861)
Q Consensus 731 k~l~eevtkl~~qn~~l~~el~~~ 754 (861)
-.|-+.|.+|..+...|-.+++.+
T Consensus 83 ~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 83 ELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHhh
Confidence 456677888888888888888876
No 438
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=29.44 E-value=45 Score=42.06 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHhh-cCCCeeEEEecccCCCCcccc
Q 002982 123 HVYDIAAQHVVSGAM-DGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 123 eVY~~~~~plV~~vl-~GyN~tIfAYGqTGSGKTyTM 158 (861)
.||..+ ......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 HifaiA-~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 68 HIYSLA-QTAYRALLETRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred CHHHHH-HHHHHHHHHcCCCceEEEecCCCCCcHHHH
Confidence 566533 33333333 699999999999999999986
No 439
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=29.32 E-value=46 Score=39.18 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=15.4
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..|+..|++|+|||+|+.
T Consensus 224 ~vi~lvGptGvGKTTtaa 241 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIA 241 (432)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457778999999999985
No 440
>PRK10869 recombination and repair protein; Provisional
Probab=29.29 E-value=9.8e+02 Score=29.18 Aligned_cols=48 Identities=21% Similarity=0.296 Sum_probs=27.0
Q ss_pred HHHHHHHHhhHHhHhhhhhhhhhchhhhhhh-----hhhhhhHHHHHHHHhhH
Q 002982 687 EIEELNRKVTELTEAKEQLELRNQKLSEESS-----YAKGLASAAAVELKALS 734 (861)
Q Consensus 687 e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~-----yak~lasaaavelk~l~ 734 (861)
++++......+|.++...+..+-.+++++-| +|+.|+.+.--+|+.|.
T Consensus 335 ~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~~L~~L~ 387 (553)
T PRK10869 335 QLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITESMHELS 387 (553)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344444555555555555555555555544 56666666666665554
No 441
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=29.28 E-value=42 Score=37.18 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=16.2
Q ss_pred CCeeEEEecccCCCCccccc
Q 002982 140 INGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM~ 159 (861)
+...++-||+.|+|||.+..
T Consensus 35 ~~~~~Ll~G~~G~GKt~~a~ 54 (355)
T TIGR02397 35 IAHAYLFSGPRGTGKTSIAR 54 (355)
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34567889999999998863
No 442
>PRK14531 adenylate kinase; Provisional
Probab=29.22 E-value=24 Score=35.78 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=14.2
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
-|+.+|.+|||||+.-.
T Consensus 4 ~i~i~G~pGsGKsT~~~ 20 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAA 20 (183)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999988754
No 443
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=29.19 E-value=4.9e+02 Score=28.75 Aligned_cols=67 Identities=15% Similarity=0.316 Sum_probs=52.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhhcccCccCcccccccccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHHHH
Q 002982 564 LRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLND 636 (861)
Q Consensus 564 l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~ik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~ 636 (861)
++..+....+|+...|.+|..-|...... =-.+|..| +-||++|..-+..|..+.+.+...+..+..
T Consensus 33 i~~~~ekLs~~ldvVe~~L~~~I~~~s~~-f~~a~~~v-----~el~~~l~~a~~~~~~~R~~L~~~~~~~~~ 99 (291)
T PF10475_consen 33 IEELQEKLSHYLDVVEKKLSREISEKSDS-FFQAMSSV-----QELQDELEEALVICKNLRRNLKSADENLTK 99 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33445666789999999999998885532 22366667 789999999999999999999888888765
No 444
>PHA02653 RNA helicase NPH-II; Provisional
Probab=29.13 E-value=38 Score=42.04 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=17.8
Q ss_pred HHHHhhcCCCeeEEEecccCCCCcccc
Q 002982 132 VVSGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
++..++.|- .|+..|+||||||..+
T Consensus 172 il~~i~~gk--dvIv~A~TGSGKTtqv 196 (675)
T PHA02653 172 IFEAWISRK--PVVLTGGTGVGKTSQV 196 (675)
T ss_pred HHHHHHhCC--CEEEECCCCCCchhHH
Confidence 344455564 5688999999999653
No 445
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=29.01 E-value=38 Score=35.28 Aligned_cols=29 Identities=21% Similarity=0.167 Sum_probs=21.1
Q ss_pred HHHHHhh-cCC--CeeEEEecccCCCCccccc
Q 002982 131 HVVSGAM-DGI--NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 131 plV~~vl-~Gy--N~tIfAYGqTGSGKTyTM~ 159 (861)
+-+|.++ .|+ ..++.-+|++|+|||+...
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~ 38 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCL 38 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHH
Confidence 4456666 454 5678889999999988653
No 446
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=28.92 E-value=24 Score=41.05 Aligned_cols=18 Identities=39% Similarity=0.372 Sum_probs=15.4
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..|+-.|++|+|||+|+.
T Consensus 207 ~ii~lvGptGvGKTTt~a 224 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLV 224 (407)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 456788999999999986
No 447
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=28.91 E-value=97 Score=29.53 Aligned_cols=31 Identities=13% Similarity=0.152 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhhHHhHhhhhhhhhhchhhh
Q 002982 684 QAAEIEELNRKVTELTEAKEQLELRNQKLSE 714 (861)
Q Consensus 684 q~~e~e~lk~~~~~l~e~k~~l~~~n~kl~e 714 (861)
+..+++.++++..+|..++..|+.+-..|-.
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3445555555555555555555444444443
No 448
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=28.90 E-value=39 Score=41.89 Aligned_cols=52 Identities=19% Similarity=0.376 Sum_probs=36.1
Q ss_pred CCcccCCCCchhhhhhccCCCCc-----cce----eEEeeCCCCCChHHHHHHHHHHHHcccccccc
Q 002982 312 ATHIPYRDSKLTRLLQSSLSGHG-----RVS----LICTVTPSSSSSEETHNTLKFAHRAKHIEILA 369 (861)
Q Consensus 312 ~~hIPYRDSKLTrLLqdSLGGNs-----kT~----mIa~ISPs~~~~eETLsTLrFAsRAk~Ikn~~ 369 (861)
-.|-||-...|-.++...|.|-. -+= =||.||- ++-..|.|+.||..|.-..
T Consensus 571 i~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSG------DaRraldic~RA~Eia~~~ 631 (767)
T KOG1514|consen 571 ICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSG------DARRALDICRRAAEIAEER 631 (767)
T ss_pred eecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccc------cHHHHHHHHHHHHHHhhhh
Confidence 45789999999999988888751 000 1344443 4677899999999886443
No 449
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=28.88 E-value=38 Score=41.44 Aligned_cols=20 Identities=25% Similarity=0.187 Sum_probs=15.6
Q ss_pred CCeeEEEecccCCCCccccc
Q 002982 140 INGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM~ 159 (861)
....++..|+||||||....
T Consensus 255 ~~~~~Ll~g~TGSGKT~va~ 274 (630)
T TIGR00643 255 VPMNRLLQGDVGSGKTLVAA 274 (630)
T ss_pred CCccEEEECCCCCcHHHHHH
Confidence 33457889999999998753
No 450
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=28.78 E-value=37 Score=38.65 Aligned_cols=53 Identities=19% Similarity=0.298 Sum_probs=35.5
Q ss_pred ceeEeeceecCCCCcchhHHHHHHHHHHHHhh-c--CCC--eeEEEecccCCCCcccc
Q 002982 106 SIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAM-D--GIN--GTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 106 ~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl-~--GyN--~tIfAYGqTGSGKTyTM 158 (861)
...|+||.|-+-...-.++-+.+.-|++...+ . |.. -.+.-||+.|+|||+-.
T Consensus 126 ~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla 183 (388)
T KOG0651|consen 126 PRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLA 183 (388)
T ss_pred ccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHH
Confidence 34688888876655445566666677776544 2 333 23678999999999864
No 451
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=28.66 E-value=26 Score=30.12 Aligned_cols=16 Identities=31% Similarity=0.308 Sum_probs=12.9
Q ss_pred EEEecccCCCCccccc
Q 002982 144 IFAYGVTSSGKTHTMH 159 (861)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (861)
++.+|..|+|||.+..
T Consensus 2 ~~~~g~~G~Gktt~~~ 17 (99)
T cd01983 2 IVVTGKGGVGKTTLAA 17 (99)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4667888999999864
No 452
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=28.64 E-value=35 Score=36.71 Aligned_cols=16 Identities=31% Similarity=0.328 Sum_probs=13.6
Q ss_pred EEEecccCCCCccccc
Q 002982 144 IFAYGVTSSGKTHTMH 159 (861)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (861)
-..+|++|+|||.|+.
T Consensus 35 ~~~~GpagtGKtetik 50 (231)
T PF12774_consen 35 GALSGPAGTGKTETIK 50 (231)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CCCcCCCCCCchhHHH
Confidence 3469999999999985
No 453
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=28.59 E-value=25 Score=39.71 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=18.9
Q ss_pred HhhcCCC---eeEEEecccCCCCccccc
Q 002982 135 GAMDGIN---GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 135 ~vl~GyN---~tIfAYGqTGSGKTyTM~ 159 (861)
++|.|.- ..|+-||+.|+||+|.--
T Consensus 157 qlFtGkR~PwrgiLLyGPPGTGKSYLAK 184 (439)
T KOG0739|consen 157 QLFTGKRKPWRGILLYGPPGTGKSYLAK 184 (439)
T ss_pred hhhcCCCCcceeEEEeCCCCCcHHHHHH
Confidence 4454443 678999999999999764
No 454
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=28.57 E-value=27 Score=42.53 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=14.8
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
-..+-.|++|+|||||+.
T Consensus 202 ~l~~I~GPPGTGKT~Tlv 219 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTLV 219 (649)
T ss_pred CceEeeCCCCCCceeeHH
Confidence 445668999999999984
No 455
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=28.55 E-value=25 Score=34.92 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=13.4
Q ss_pred EEEecccCCCCccccc
Q 002982 144 IFAYGVTSSGKTHTMH 159 (861)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (861)
++-+|++|+|||....
T Consensus 2 ~li~G~~G~GKT~l~~ 17 (187)
T cd01124 2 TLLSGGPGTGKTTFAL 17 (187)
T ss_pred EEEEcCCCCCHHHHHH
Confidence 5779999999998653
No 456
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=28.54 E-value=22 Score=36.35 Aligned_cols=16 Identities=38% Similarity=0.320 Sum_probs=13.2
Q ss_pred EEEecccCCCCccccc
Q 002982 144 IFAYGVTSSGKTHTMH 159 (861)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (861)
|.-.|++|||||++-.
T Consensus 2 IgI~G~sgSGKTTla~ 17 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAK 17 (194)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 5668999999998863
No 457
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=28.50 E-value=34 Score=41.66 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=18.1
Q ss_pred HHHhhcCCCeeEEEecccCCCCccccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
+..++.|.++. +.++||+|||.+..
T Consensus 34 i~~il~g~dvl--v~apTGsGKTl~y~ 58 (607)
T PRK11057 34 IDAVLSGRDCL--VVMPTGGGKSLCYQ 58 (607)
T ss_pred HHHHHcCCCEE--EEcCCCchHHHHHH
Confidence 34567888764 45799999997643
No 458
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=28.47 E-value=28 Score=38.24 Aligned_cols=18 Identities=39% Similarity=0.540 Sum_probs=14.9
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
.+|...|++|+|||.|..
T Consensus 73 ~vi~l~G~~G~GKTTt~a 90 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIA 90 (272)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 456666999999999985
No 459
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=28.36 E-value=38 Score=39.98 Aligned_cols=89 Identities=9% Similarity=0.080 Sum_probs=42.9
Q ss_pred hhcCCCeeEEEecccCCCCccccccCCccceeeE-EEEEEecceeeeccCCCCCCceeeeCCCCeEEcccEEEEecCHHH
Q 002982 136 AMDGINGTIFAYGVTSSGKTHTMHTPNREFLLRV-SYLEIYNEVVNDLLNPAGQNLRIREDSQGTFVEGVKEEVVLSPAH 214 (861)
Q Consensus 136 vl~GyN~tIfAYGqTGSGKTyTM~g~~~~f~V~v-SylEIYnE~I~DLL~p~~~~L~Ired~~G~~V~gLse~~V~S~ee 214 (861)
+=.++|.+ -.|++|+||||.-.+-.....+.- .|+- ..+-+++|-. ..+......+.+.+..+.-++.....+
T Consensus 206 ve~~~Nli--~lGp~GTGKThla~~l~~~~a~~sG~f~T-~a~Lf~~L~~---~~lg~v~~~DlLI~DEvgylp~~~~~~ 279 (449)
T TIGR02688 206 VEPNYNLI--ELGPKGTGKSYIYNNLSPYVILISGGTIT-VAKLFYNIST---RQIGLVGRWDVVAFDEVATLKFAKPKE 279 (449)
T ss_pred HhcCCcEE--EECCCCCCHHHHHHHHhHHHHHHcCCcCc-HHHHHHHHHH---HHHhhhccCCEEEEEcCCCCcCCchHH
Confidence 33667765 469999999988652111100000 0000 0111222211 111111122334556666666677778
Q ss_pred HHHHHHHhHhcccccc
Q 002982 215 ALSLIAAGEEHRHVGS 230 (861)
Q Consensus 215 ~~~lL~~G~~~R~~as 230 (861)
+...|.....+-...-
T Consensus 280 ~v~imK~yMesg~fsR 295 (449)
T TIGR02688 280 LIGILKNYMESGSFTR 295 (449)
T ss_pred HHHHHHHHHHhCceec
Confidence 8887777666554443
No 460
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=28.36 E-value=30 Score=43.38 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=14.6
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.++-||++|+|||+...
T Consensus 349 ~lll~GppG~GKT~lAk 365 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLGK 365 (775)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47779999999998875
No 461
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=28.30 E-value=1.6e+03 Score=30.20 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=19.4
Q ss_pred hhhHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHh
Q 002982 606 NRIIQEQLNQKICECEGLQETIGFLKQQLNDALE 639 (861)
Q Consensus 606 nrilqeql~~k~~e~~elqe~v~~l~qql~~~~~ 639 (861)
|+.+|=-|......+.+.|+....++.-|-+-.+
T Consensus 322 ~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~e 355 (1293)
T KOG0996|consen 322 NKLCQYILYESRAKIAEMQEELEKIEEGLKDENE 355 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4444555555555666666666666666655444
No 462
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=28.25 E-value=2.2e+02 Score=33.48 Aligned_cols=76 Identities=28% Similarity=0.408 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccCcccccccccchhh------h-HHHHHHhH-HhhhhhHHHH
Q 002982 555 EQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQVKAADNR------I-IQEQLNQK-ICECEGLQET 626 (861)
Q Consensus 555 ~~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~ik~adnr------i-lqeql~~k-~~e~~elqe~ 626 (861)
.+++-|..|...||..-..-|+.||+.|.+--. .+-+.|-+ =||| . =-+|-|.. +.|..+|+.+
T Consensus 288 ~kL~~ql~k~leEi~~~e~~I~~le~airdK~~-------pLKVAqTR-le~Rt~RPnvELCrD~AQ~~L~~EV~~l~~t 359 (421)
T KOG2685|consen 288 NKLEWQLAKTLEEIADAENNIEALERAIRDKEG-------PLKVAQTR-LENRTYRPNVELCRDQAQYRLVDEVHELDDT 359 (421)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccc-------cHHHHHHH-HHHcccCCchHHHHhHHHHHHHHHHHHHHHH
Confidence 357778999999999999999999999984332 22222200 0111 1 12344444 5789999999
Q ss_pred HHHHHHHHHHHH
Q 002982 627 IGFLKQQLNDAL 638 (861)
Q Consensus 627 v~~l~qql~~~~ 638 (861)
|..|+++|.+|-
T Consensus 360 ~~~L~~kL~eA~ 371 (421)
T KOG2685|consen 360 VAALKEKLDEAE 371 (421)
T ss_pred HHHHHHHHHHHH
Confidence 999999998763
No 463
>PRK08233 hypothetical protein; Provisional
Probab=28.21 E-value=25 Score=34.80 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=13.2
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.|+--|++|||||+...
T Consensus 5 iI~I~G~~GsGKtTla~ 21 (182)
T PRK08233 5 IITIAAVSGGGKTTLTE 21 (182)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 34557999999998764
No 464
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=28.19 E-value=1.2e+02 Score=37.58 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHhHHHHhcCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccc
Q 002982 520 IDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSH 590 (861)
Q Consensus 520 ~dllreq~k~l~geva~~~s~lkrl~e~a~~~p~~~~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~ 590 (861)
++.+++|+-.+.-+......-++-|+.++... -.+++.++..|+.++.+...|+..||+++.+ +..++
T Consensus 348 ~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~--~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~-l~~~r 415 (656)
T PRK06975 348 VDRLDQELVQRQQANDAQTAELRVKTEQAQAS--VHQLDSQFAQLDGKLADAQSAQQALEQQYQD-LSRNR 415 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCh
Confidence 44444443333333322233334444444432 2456778899999999999999999999854 44444
No 465
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=28.06 E-value=29 Score=41.75 Aligned_cols=44 Identities=20% Similarity=0.395 Sum_probs=27.8
Q ss_pred EeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCcccc
Q 002982 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
|.||.+++....-..+.+ .+. .+...+..|+-+|.+||||++.-
T Consensus 209 ~~f~~iiG~S~~m~~~~~-----~i~-~~A~~~~pVLI~GE~GTGKe~lA 252 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRA-----LVR-LYARSDATVLILGESGTGKELVA 252 (526)
T ss_pred cchhheeeCCHHHHHHHH-----HHH-HHhCCCCcEEEECCCCcCHHHHH
Confidence 666666655432222222 222 24567889999999999998765
No 466
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=27.81 E-value=43 Score=42.46 Aligned_cols=29 Identities=10% Similarity=0.170 Sum_probs=20.3
Q ss_pred HHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 129 AQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 129 ~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
...+++.+-.+ ..|+..|+||||||..+.
T Consensus 10 ~~~i~~~l~~~--~~vvv~A~TGSGKTt~~p 38 (812)
T PRK11664 10 LPELLTALKTA--PQVLLKAPTGAGKSTWLP 38 (812)
T ss_pred HHHHHHHHHhC--CCEEEEcCCCCCHHHHHH
Confidence 34555555443 347779999999998864
No 467
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=27.78 E-value=1.7e+02 Score=30.15 Aligned_cols=30 Identities=37% Similarity=0.547 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 002982 555 EQLQVEIKKLRDEIKGKNDQIALLEKQIAD 584 (861)
Q Consensus 555 ~~~~~~~~~l~~ei~~k~~qi~~le~~i~~ 584 (861)
.+...|+++|++||+.++..+..|-+|+.+
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888888888888888888777654
No 468
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=27.77 E-value=24 Score=35.99 Aligned_cols=16 Identities=38% Similarity=0.312 Sum_probs=13.3
Q ss_pred EEEecccCCCCccccc
Q 002982 144 IFAYGVTSSGKTHTMH 159 (861)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (861)
|.-.|++|||||+++.
T Consensus 2 igi~G~~GsGKSTl~~ 17 (198)
T cd02023 2 IGIAGGSGSGKTTVAE 17 (198)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4557999999999874
No 469
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=27.70 E-value=27 Score=33.73 Aligned_cols=72 Identities=11% Similarity=0.212 Sum_probs=39.0
Q ss_pred hcCCCeeEEEecccCCCCccccc------cCCccceeeEEEEEEecceeeeccCCCCCCceeeeCCCC-eEEcccEEEEe
Q 002982 137 MDGINGTIFAYGVTSSGKTHTMH------TPNREFLLRVSYLEIYNEVVNDLLNPAGQNLRIREDSQG-TFVEGVKEEVV 209 (861)
Q Consensus 137 l~GyN~tIfAYGqTGSGKTyTM~------g~~~~f~V~vSylEIYnE~I~DLL~p~~~~L~Ired~~G-~~V~gLse~~V 209 (861)
+...+..|+-+|..||||++... +......+.+.+..+. .|++.. ..+| .|++++....-
T Consensus 17 ~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~----~~~l~~---------a~~gtL~l~~i~~L~~ 83 (138)
T PF14532_consen 17 LAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP----AELLEQ---------AKGGTLYLKNIDRLSP 83 (138)
T ss_dssp HHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC----HHHHHH---------CTTSEEEEECGCCS-H
T ss_pred HhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc----HHHHHH---------cCCCEEEECChHHCCH
Confidence 34777889999999999998753 1111111111111100 222221 1345 57788877777
Q ss_pred cCHHHHHHHHHH
Q 002982 210 LSPAHALSLIAA 221 (861)
Q Consensus 210 ~S~ee~~~lL~~ 221 (861)
.....+..+|..
T Consensus 84 ~~Q~~L~~~l~~ 95 (138)
T PF14532_consen 84 EAQRRLLDLLKR 95 (138)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 777777777765
No 470
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=27.69 E-value=28 Score=38.37 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=16.3
Q ss_pred CCeeEEEecccCCCCcccc
Q 002982 140 INGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM 158 (861)
.-..+|.||..|+|||..+
T Consensus 75 ~~~~~~l~G~g~nGKStl~ 93 (304)
T TIGR01613 75 EQKLFFLYGNGGNGKSTFQ 93 (304)
T ss_pred ceEEEEEECCCCCcHHHHH
Confidence 4467999999999999876
No 471
>PRK10867 signal recognition particle protein; Provisional
Probab=27.67 E-value=58 Score=38.35 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=16.1
Q ss_pred CeeEEEecccCCCCccccc
Q 002982 141 NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (861)
...|+..|.+|+|||.|..
T Consensus 100 p~vI~~vG~~GsGKTTtaa 118 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAG 118 (433)
T ss_pred CEEEEEECCCCCcHHHHHH
Confidence 3568888999999999874
No 472
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=27.59 E-value=28 Score=34.69 Aligned_cols=17 Identities=35% Similarity=0.440 Sum_probs=14.0
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.|+..|+.|||||+...
T Consensus 5 ii~i~G~~GsGKsTl~~ 21 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCE 21 (188)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46678999999998764
No 473
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=27.59 E-value=1.1e+02 Score=35.17 Aligned_cols=68 Identities=24% Similarity=0.358 Sum_probs=55.3
Q ss_pred cchhhHHHHHHHHHHhhhhhhhhhhHHHHhHHHHh-----------cCCChH---HHHHHHHHHHHHHHhHHHHHHHHHH
Q 002982 515 KTIDQIDLLREQQKILAGEVALHSSALKRLSEEAA-----------RNPQKE---QLQVEIKKLRDEIKGKNDQIALLEK 580 (861)
Q Consensus 515 ~~~d~~dllreq~k~l~geva~~~s~lkrl~e~a~-----------~~p~~~---~~~~~~~~l~~ei~~k~~qi~~le~ 580 (861)
...|++.-.+++.+.++|-|.-.|..|.+++|+-- ..-++. +|+.-|.+|+.||++-.=+|-+||+
T Consensus 277 ~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIGVleh 356 (359)
T PF10498_consen 277 SAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIGVLEH 356 (359)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhheehh
Confidence 34688899999999999999999999999998742 233333 4777888999999999999998887
Q ss_pred HH
Q 002982 581 QI 582 (861)
Q Consensus 581 ~i 582 (861)
.|
T Consensus 357 ~L 358 (359)
T PF10498_consen 357 TL 358 (359)
T ss_pred hc
Confidence 54
No 474
>PRK14532 adenylate kinase; Provisional
Probab=27.58 E-value=29 Score=35.00 Aligned_cols=16 Identities=19% Similarity=0.480 Sum_probs=13.5
Q ss_pred eEEEecccCCCCcccc
Q 002982 143 TIFAYGVTSSGKTHTM 158 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM 158 (861)
.||.+|.+|||||+.-
T Consensus 2 ~i~~~G~pGsGKsT~a 17 (188)
T PRK14532 2 NLILFGPPAAGKGTQA 17 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999998764
No 475
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=27.34 E-value=42 Score=38.93 Aligned_cols=85 Identities=15% Similarity=0.323 Sum_probs=45.7
Q ss_pred CCCeeEEEecccCCCCccccc-----cC-CccceeeEEEEEEecceeee-ccCCCCC---------CceeeeCCCC-eEE
Q 002982 139 GINGTIFAYGVTSSGKTHTMH-----TP-NREFLLRVSYLEIYNEVVND-LLNPAGQ---------NLRIREDSQG-TFV 201 (861)
Q Consensus 139 GyN~tIfAYGqTGSGKTyTM~-----g~-~~~f~V~vSylEIYnE~I~D-LL~p~~~---------~L~Ired~~G-~~V 201 (861)
..+..|+-.|.+|+||++.-. .+ ...-.|.+.|-.+..+.+.. |+..... .-.+....+| .|+
T Consensus 159 ~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l 238 (469)
T PRK10923 159 RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 (469)
T ss_pred ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEE
Confidence 457789999999999997542 11 11222344443333333322 2221110 1112233355 577
Q ss_pred cccEEEEecCHHHHHHHHHHhH
Q 002982 202 EGVKEEVVLSPAHALSLIAAGE 223 (861)
Q Consensus 202 ~gLse~~V~S~ee~~~lL~~G~ 223 (861)
.++......-...++.+|..+.
T Consensus 239 ~~i~~l~~~~q~~L~~~l~~~~ 260 (469)
T PRK10923 239 DEIGDMPLDVQTRLLRVLADGQ 260 (469)
T ss_pred eccccCCHHHHHHHHHHHhcCc
Confidence 7777776666667777776554
No 476
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=26.95 E-value=3.4e+02 Score=31.87 Aligned_cols=104 Identities=14% Similarity=0.089 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHhhhhhhhhhh----------------------HHHHh-HHHHhcCCChHHHHHHHHHHHHHHHhHH
Q 002982 516 TIDQIDLLREQQKILAGEVALHSS----------------------ALKRL-SEEAARNPQKEQLQVEIKKLRDEIKGKN 572 (861)
Q Consensus 516 ~~d~~dllreq~k~l~geva~~~s----------------------~lkrl-~e~a~~~p~~~~~~~~~~~l~~ei~~k~ 572 (861)
+..+++.++++.+.+.....+-.. .|+.+ .......+.-.+++.++..++.+|.+.+
T Consensus 177 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~~~ 256 (457)
T TIGR01000 177 LDQQISKTDQKLQDYQALKNAISNGTKVANFNPYQSLYENYQAQLKSASDKDQKNQVKSTILATIQQQIDQLQKSIASYQ 256 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH------------HHHHHhhhhcccCccCcccccccccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHHH
Q 002982 573 DQIALL------------EKQIADSIMTSHNTMDNSEVSQVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLN 635 (861)
Q Consensus 573 ~qi~~l------------e~~i~~s~~~s~~~~~~~~~~~ik~adnrilqeql~~k~~e~~elqe~v~~l~qql~ 635 (861)
.++..| +.|+......-. ..++++|.+-..+..++++.+..++.+|.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------~~~~~~l~~~~~~l~~~~~~l~~a~~~l~ 315 (457)
T TIGR01000 257 VQKAGLTKSTASNYASSQNSKLAQLKEQQL----------------AKVKQEITDLNQKLLELESKIKSLKEDSQ 315 (457)
T ss_pred HHHhhccCCccchhhhhhHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 477
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=26.91 E-value=40 Score=43.31 Aligned_cols=32 Identities=16% Similarity=0.074 Sum_probs=21.7
Q ss_pred HHHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 128 AAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 128 ~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
++..+..++-.|...-++..|+||||||.+..
T Consensus 459 aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val 490 (926)
T TIGR00580 459 AIEEIKADMESPRPMDRLVCGDVGFGKTEVAM 490 (926)
T ss_pred HHHHHHhhhcccCcCCEEEECCCCccHHHHHH
Confidence 33444454445555567889999999998754
No 478
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=26.89 E-value=1.6e+03 Score=29.58 Aligned_cols=52 Identities=33% Similarity=0.382 Sum_probs=28.6
Q ss_pred hhhhhhchhhhhh-------hhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhc
Q 002982 704 QLELRNQKLSEES-------SYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAK 755 (861)
Q Consensus 704 ~l~~~n~kl~ee~-------~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~~~~ 755 (861)
|||.+|++|-|=- +.+|.----+--||.-+--|++-|--+-++|+.++..+-
T Consensus 372 qlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aE 430 (1243)
T KOG0971|consen 372 QLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAE 430 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 6788888776532 223333333334455555566666666666666655443
No 479
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=26.75 E-value=42 Score=41.91 Aligned_cols=25 Identities=40% Similarity=0.442 Sum_probs=20.1
Q ss_pred HHHHHHhhcCCCeeEEEecccCCCCccc
Q 002982 130 QHVVSGAMDGINGTIFAYGVTSSGKTHT 157 (861)
Q Consensus 130 ~plV~~vl~GyN~tIfAYGqTGSGKTyT 157 (861)
..++..+| |-|+.|.+ +||+|||+.
T Consensus 68 ~eivq~AL-gkNtii~l--PTG~GKTfI 92 (746)
T KOG0354|consen 68 EELVQPAL-GKNTIIAL--PTGSGKTFI 92 (746)
T ss_pred HHHhHHhh-cCCeEEEe--ecCCCccch
Confidence 45677888 99987654 999999986
No 480
>PRK01172 ski2-like helicase; Provisional
Probab=26.75 E-value=38 Score=41.63 Aligned_cols=22 Identities=27% Similarity=0.234 Sum_probs=16.7
Q ss_pred HhhcCCCeeEEEecccCCCCcccc
Q 002982 135 GAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 135 ~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
.+..|-| ++..++||||||...
T Consensus 33 ~l~~~~n--vlv~apTGSGKTl~a 54 (674)
T PRK01172 33 QLRKGEN--VIVSVPTAAGKTLIA 54 (674)
T ss_pred HHhcCCc--EEEECCCCchHHHHH
Confidence 3466766 577789999999864
No 481
>PRK06217 hypothetical protein; Validated
Probab=26.65 E-value=28 Score=35.33 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=13.6
Q ss_pred EEEecccCCCCccccc
Q 002982 144 IFAYGVTSSGKTHTMH 159 (861)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (861)
|+-.|.+|||||+.-.
T Consensus 4 I~i~G~~GsGKSTla~ 19 (183)
T PRK06217 4 IHITGASGSGTTTLGA 19 (183)
T ss_pred EEEECCCCCCHHHHHH
Confidence 7788999999997654
No 482
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=26.62 E-value=47 Score=38.20 Aligned_cols=87 Identities=11% Similarity=0.222 Sum_probs=45.1
Q ss_pred hcCCCeeEEEecccCCCCccccc-----cC-CccceeeEEEEEEecceeeecc-CCCC---------CCceeeeCCCC-e
Q 002982 137 MDGINGTIFAYGVTSSGKTHTMH-----TP-NREFLLRVSYLEIYNEVVNDLL-NPAG---------QNLRIREDSQG-T 199 (861)
Q Consensus 137 l~GyN~tIfAYGqTGSGKTyTM~-----g~-~~~f~V~vSylEIYnE~I~DLL-~p~~---------~~L~Ired~~G-~ 199 (861)
+...+..|+-+|.+|+||++.-. .. ...-.+.+.|..+..+.+...| .... ..-.+....+| +
T Consensus 162 ~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl 241 (457)
T PRK11361 162 IALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTL 241 (457)
T ss_pred HcCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEE
Confidence 34567789999999999987653 11 1122233333333333222222 1110 01122223345 5
Q ss_pred EEcccEEEEecCHHHHHHHHHHhH
Q 002982 200 FVEGVKEEVVLSPAHALSLIAAGE 223 (861)
Q Consensus 200 ~V~gLse~~V~S~ee~~~lL~~G~ 223 (861)
|+.++......-...++.+|..+.
T Consensus 242 ~ld~i~~l~~~~q~~L~~~l~~~~ 265 (457)
T PRK11361 242 LLDEIGEMPLVLQAKLLRILQERE 265 (457)
T ss_pred EEechhhCCHHHHHHHHHHHhcCc
Confidence 777777776666666666666543
No 483
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=26.54 E-value=41 Score=39.67 Aligned_cols=42 Identities=14% Similarity=0.229 Sum_probs=26.1
Q ss_pred eeceecCCCCcchhHHHHHHHHHHHHhhcCC-CeeEEEecccCCCCccccc
Q 002982 110 AYDRVFGPTTTTRHVYDIAAQHVVSGAMDGI-NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 110 ~FD~VF~~~atQeeVY~~~~~plV~~vl~Gy-N~tIfAYGqTGSGKTyTM~ 159 (861)
+||.|++.+ .+ +..+...+-.|. .-.++-||+.|+|||.+..
T Consensus 15 ~~~diiGq~----~~----v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~ 57 (451)
T PRK06305 15 TFSEILGQD----AV----VAVLKNALRFNRAAHAYLFSGIRGTGKTTLAR 57 (451)
T ss_pred CHHHhcCcH----HH----HHHHHHHHHcCCCceEEEEEcCCCCCHHHHHH
Confidence 677777643 22 233333333454 2456669999999998874
No 484
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=26.53 E-value=26 Score=32.24 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=14.2
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
-|..+|.+|+|||..|.
T Consensus 3 ki~~~G~~~~GKstl~~ 19 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLN 19 (161)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36778999999998874
No 485
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.51 E-value=4e+02 Score=24.74 Aligned_cols=91 Identities=22% Similarity=0.310 Sum_probs=50.9
Q ss_pred hhhHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhhhhccccccccchhhhhhhhhhhhhHHHHHHH
Q 002982 606 NRIIQEQLNQKICECEGLQETIGFLKQQLNDALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDINEDSRLQVQA 685 (861)
Q Consensus 606 nrilqeql~~k~~e~~elqe~v~~l~qql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 685 (861)
+..-..+.+.-..|+..|+..+..|+..+.+.... ++.+.. +....... .+.+.... .+-.-+.+.-.
T Consensus 7 ~~~~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~Ge-dL~~Ls-----~~eL~~LE--~~Le~aL~----~VR~rK~~~l~ 74 (100)
T PF01486_consen 7 TDLWDSQHEELQQEIAKLRKENESLQKELRHLMGE-DLESLS-----LKELQQLE--QQLESALK----RVRSRKDQLLM 74 (100)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cccccc-----hHHHHHHH--HhhhhhHH----HHHHHHHHHHH
Confidence 34445666777788888888888888887765432 221110 00000000 00000000 01111233346
Q ss_pred HHHHHHHHHhhHHhHhhhhhhhh
Q 002982 686 AEIEELNRKVTELTEAKEQLELR 708 (861)
Q Consensus 686 ~e~e~lk~~~~~l~e~k~~l~~~ 708 (861)
.+|+.|+.+...|.++|..|..+
T Consensus 75 ~~i~~l~~ke~~l~~en~~L~~~ 97 (100)
T PF01486_consen 75 EQIEELKKKERELEEENNQLRQK 97 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999998753
No 486
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=26.49 E-value=32 Score=38.33 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=14.3
Q ss_pred eeEEEecccCCCCcccc
Q 002982 142 GTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM 158 (861)
-.|+.||+.|+|||..-
T Consensus 212 kgvllygppgtgktl~a 228 (435)
T KOG0729|consen 212 KGVLLYGPPGTGKTLCA 228 (435)
T ss_pred CceEEeCCCCCchhHHH
Confidence 35899999999998764
No 487
>PRK04040 adenylate kinase; Provisional
Probab=26.46 E-value=29 Score=35.90 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=14.8
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.|+.+|.+|||||+...
T Consensus 4 ~i~v~G~pG~GKtt~~~ 20 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLN 20 (188)
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 47889999999999875
No 488
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=26.33 E-value=28 Score=34.10 Aligned_cols=17 Identities=35% Similarity=0.352 Sum_probs=14.2
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.|.-+|++|||||+...
T Consensus 2 iI~i~G~~GSGKstia~ 18 (171)
T TIGR02173 2 IITISGPPGSGKTTVAK 18 (171)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47789999999998764
No 489
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=26.31 E-value=47 Score=41.80 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=16.4
Q ss_pred CeeEEEecccCCCCccccc
Q 002982 141 NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (861)
.+.++-+|+||+|||+...
T Consensus 488 ~~~~Lf~GP~GvGKT~lAk 506 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVTV 506 (758)
T ss_pred cceEEEECCCCCCHHHHHH
Confidence 3678999999999999874
No 490
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=26.21 E-value=40 Score=37.16 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=21.2
Q ss_pred HHHHHhhcCC---CeeEEEecccCCCCccccc
Q 002982 131 HVVSGAMDGI---NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 131 plV~~vl~Gy---N~tIfAYGqTGSGKTyTM~ 159 (861)
+-++.++.|- ...+.-||.+|||||..+.
T Consensus 82 ~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~ 113 (310)
T TIGR02236 82 KELDELLGGGIETQAITEVFGEFGSGKTQICH 113 (310)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 4466666643 4566789999999998764
No 491
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=26.17 E-value=27 Score=43.28 Aligned_cols=19 Identities=37% Similarity=0.590 Sum_probs=16.8
Q ss_pred CeeEEEecccCCCCccccc
Q 002982 141 NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (861)
|+-++..|.||||||++|.
T Consensus 434 ~~n~~I~G~tGsGKS~~~~ 452 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLLN 452 (785)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 6778889999999999984
No 492
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=26.14 E-value=31 Score=37.40 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=12.4
Q ss_pred EEecccCCCCccccc
Q 002982 145 FAYGVTSSGKTHTMH 159 (861)
Q Consensus 145 fAYGqTGSGKTyTM~ 159 (861)
.-.|++|||||+.+-
T Consensus 32 ~iiGpSGSGKSTlLR 46 (240)
T COG1126 32 VIIGPSGSGKSTLLR 46 (240)
T ss_pred EEECCCCCCHHHHHH
Confidence 457999999998774
No 493
>PRK00300 gmk guanylate kinase; Provisional
Probab=26.12 E-value=30 Score=35.24 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=15.0
Q ss_pred CeeEEEecccCCCCccccc
Q 002982 141 NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (861)
...|.-.|++|||||..+.
T Consensus 5 g~~i~i~G~sGsGKstl~~ 23 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVK 23 (205)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3467788999999997654
No 494
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=26.05 E-value=30 Score=34.51 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=14.6
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..|+-.|++|||||..+.
T Consensus 2 ~ii~l~G~~GsGKsTl~~ 19 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVK 19 (180)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 357788999999998764
No 495
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=26.03 E-value=57 Score=38.42 Aligned_cols=19 Identities=37% Similarity=0.485 Sum_probs=16.5
Q ss_pred CeeEEEecccCCCCccccc
Q 002982 141 NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (861)
...|+-.|.+|+|||.|..
T Consensus 100 ~~vi~lvG~~GvGKTTtaa 118 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCT 118 (429)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578889999999999985
No 496
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=26.03 E-value=40 Score=42.29 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=19.9
Q ss_pred HHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 132 VVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.|..++.+ +..++-.|..|+||||+|.
T Consensus 360 Av~~i~~s-~~~~il~G~aGTGKTtll~ 386 (744)
T TIGR02768 360 AVRHVTGS-GDIAVVVGRAGTGKSTMLK 386 (744)
T ss_pred HHHHHhcC-CCEEEEEecCCCCHHHHHH
Confidence 34445554 4466788999999999985
No 497
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.98 E-value=52 Score=37.07 Aligned_cols=28 Identities=14% Similarity=0.291 Sum_probs=19.5
Q ss_pred HHHHhhcC-CCeeEEEecccCCCCccccc
Q 002982 132 VVSGAMDG-INGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 132 lV~~vl~G-yN~tIfAYGqTGSGKTyTM~ 159 (861)
+...+-.| ....++-||+.|+|||++..
T Consensus 29 l~~~i~~~~~~~~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 29 LLNAIENNHLAQALLFCGPRGVGKTTCAR 57 (367)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHH
Confidence 33333345 34477789999999998874
No 498
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=25.93 E-value=6.3e+02 Score=24.70 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhhHHhHhhhhhhhhhchh
Q 002982 683 VQAAEIEELNRKVTELTEAKEQLELRNQKL 712 (861)
Q Consensus 683 ~q~~e~e~lk~~~~~l~e~k~~l~~~n~kl 712 (861)
.-..||++++.+...|.+-|.=|+.|-.-|
T Consensus 102 ~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 102 QLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 347799999999999999998888775543
No 499
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=25.72 E-value=44 Score=41.44 Aligned_cols=20 Identities=35% Similarity=0.418 Sum_probs=17.9
Q ss_pred CCCeeEEEecccCCCCcccc
Q 002982 139 GINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 139 GyN~tIfAYGqTGSGKTyTM 158 (861)
+-|.+|+..|.||||||.-+
T Consensus 369 r~n~vvvivgETGSGKTTQl 388 (1042)
T KOG0924|consen 369 RENQVVVIVGETGSGKTTQL 388 (1042)
T ss_pred hhCcEEEEEecCCCCchhhh
Confidence 67888999999999999877
No 500
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=25.56 E-value=8.2e+02 Score=25.88 Aligned_cols=40 Identities=18% Similarity=0.325 Sum_probs=22.8
Q ss_pred ccccccc---ccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHH
Q 002982 595 NSEVSQV---KAADNRIIQEQLNQKICECEGLQETIGFLKQQL 634 (861)
Q Consensus 595 ~~~~~~i---k~adnrilqeql~~k~~e~~elqe~v~~l~qql 634 (861)
..+|+|+ ...|=|+|+++|...--.+.++..++.....+|
T Consensus 56 e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el 98 (194)
T PF15619_consen 56 EAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEEL 98 (194)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567762 334447888887765555555555555444444
Done!