Query 002982
Match_columns 861
No_of_seqs 411 out of 1977
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 08:56:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002982.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002982hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1goj_A Kinesin, kinesin heavy 100.0 1.6E-83 5.5E-88 707.0 28.6 307 65-375 4-340 (355)
2 2y65_A Kinesin, kinesin heavy 100.0 8.2E-84 2.8E-88 711.5 24.8 316 65-389 9-356 (365)
3 2owm_A Nckin3-434, related to 100.0 2.7E-83 9.4E-88 722.5 28.0 309 64-374 35-422 (443)
4 3b6u_A Kinesin-like protein KI 100.0 3E-83 1E-87 708.0 27.0 309 64-373 18-361 (372)
5 2zfi_A Kinesin-like protein KI 100.0 4.4E-83 1.5E-87 706.2 24.0 308 66-373 3-362 (366)
6 3cob_A Kinesin heavy chain-lik 100.0 3.2E-82 1.1E-86 699.5 27.1 305 65-375 3-337 (369)
7 2vvg_A Kinesin-2; motor protei 100.0 3.7E-82 1.3E-86 694.9 26.6 305 66-374 3-344 (350)
8 3bfn_A Kinesin-like protein KI 100.0 2.4E-82 8.2E-87 703.6 24.4 311 63-377 17-359 (388)
9 1t5c_A CENP-E protein, centrom 100.0 2.7E-82 9.4E-87 695.8 24.3 307 66-376 3-339 (349)
10 1x88_A Kinesin-like protein KI 100.0 2.3E-82 8E-87 698.8 23.3 308 64-373 5-358 (359)
11 3lre_A Kinesin-like protein KI 100.0 1E-81 3.4E-86 692.9 25.8 300 64-365 7-355 (355)
12 1bg2_A Kinesin; motor protein, 100.0 1.2E-81 4.1E-86 685.0 23.9 292 65-365 5-325 (325)
13 2wbe_C Bipolar kinesin KRP-130 100.0 2E-81 7E-86 694.3 24.8 308 64-373 20-369 (373)
14 3gbj_A KIF13B protein; kinesin 100.0 7.5E-81 2.6E-85 685.7 24.7 299 67-365 1-350 (354)
15 4a14_A Kinesin, kinesin-like p 100.0 4.3E-80 1.5E-84 677.5 28.2 296 65-363 9-344 (344)
16 3nwn_A Kinesin-like protein KI 100.0 1.9E-80 6.6E-85 683.3 23.9 296 64-365 21-359 (359)
17 3t0q_A AGR253WP; kinesin, alph 100.0 6.8E-80 2.3E-84 677.1 26.6 300 65-369 3-348 (349)
18 2h58_A Kinesin-like protein KI 100.0 1.6E-79 5.4E-84 669.6 26.7 297 65-367 2-330 (330)
19 2nr8_A Kinesin-like protein KI 100.0 1.8E-79 6.1E-84 675.4 24.2 297 63-365 19-358 (358)
20 2rep_A Kinesin-like protein KI 100.0 4.1E-79 1.4E-83 676.2 27.1 302 58-365 13-376 (376)
21 2heh_A KIF2C protein; kinesin, 100.0 3E-79 1E-83 678.6 25.0 292 66-368 50-385 (387)
22 1f9v_A Kinesin-like protein KA 100.0 3.4E-79 1.2E-83 671.0 24.9 300 66-370 2-346 (347)
23 1v8k_A Kinesin-like protein KI 100.0 6E-79 2.1E-83 680.1 24.8 294 66-370 70-407 (410)
24 1ry6_A Internal kinesin; kines 100.0 6.4E-79 2.2E-83 671.4 23.4 297 68-373 1-339 (360)
25 4etp_A Kinesin-like protein KA 100.0 5.9E-78 2E-82 672.8 25.3 301 65-370 57-402 (403)
26 3u06_A Protein claret segregat 100.0 1.2E-77 4.1E-82 671.3 25.6 301 65-374 57-392 (412)
27 3dc4_A Kinesin-like protein NO 100.0 1.2E-76 4.1E-81 649.9 25.9 288 63-370 18-340 (344)
28 4h1g_A Maltose binding protein 100.0 6.4E-73 2.2E-77 671.7 24.6 297 65-366 372-712 (715)
29 2kin_B Kinesin; motor protein, 100.0 1.9E-29 6.5E-34 231.4 5.2 98 290-388 1-98 (100)
30 3kin_B Kinesin heavy chain; mo 100.0 1.2E-28 4.2E-33 232.2 10.3 113 294-407 1-113 (117)
31 2o0a_A S.cerevisiae chromosome 99.9 1.9E-23 6.5E-28 221.2 10.4 257 65-372 22-296 (298)
32 1i84_S Smooth muscle myosin he 95.7 0.011 3.9E-07 74.3 7.5 35 123-158 151-186 (1184)
33 1i84_S Smooth muscle myosin he 95.0 0.056 1.9E-06 68.1 10.2 15 265-279 458-472 (1184)
34 2dfs_A Myosin-5A; myosin-V, in 94.5 0.34 1.2E-05 60.6 15.3 35 123-158 138-173 (1080)
35 2dfs_A Myosin-5A; myosin-V, in 94.1 0.15 5.1E-06 63.7 10.9 55 682-753 987-1041(1080)
36 1c1g_A Tropomyosin; contractIl 93.5 6.4 0.00022 38.9 27.3 27 557-583 4-30 (284)
37 3ec2_A DNA replication protein 93.5 0.019 6.6E-07 55.5 1.2 51 108-159 6-56 (180)
38 2w58_A DNAI, primosome compone 92.6 0.04 1.4E-06 54.0 1.9 51 108-159 21-72 (202)
39 2qgz_A Helicase loader, putati 91.4 0.067 2.3E-06 57.2 2.1 51 108-159 120-170 (308)
40 3na7_A HP0958; flagellar bioge 89.2 9.6 0.00033 39.7 16.2 121 686-830 18-138 (256)
41 3t15_A Ribulose bisphosphate c 88.3 0.22 7.5E-06 52.6 2.9 49 111-159 2-54 (293)
42 1c1g_A Tropomyosin; contractIl 87.9 22 0.00074 35.0 30.7 18 518-535 13-30 (284)
43 1jbk_A CLPB protein; beta barr 85.5 0.4 1.4E-05 44.9 2.8 31 129-159 31-61 (195)
44 2bjv_A PSP operon transcriptio 85.3 0.28 9.4E-06 50.3 1.7 46 108-159 2-47 (265)
45 3oja_B Anopheles plasmodium-re 83.7 9.6 0.00033 43.6 13.7 29 801-829 549-577 (597)
46 3vfd_A Spastin; ATPase, microt 83.6 0.36 1.2E-05 52.7 1.8 52 108-159 111-166 (389)
47 1l8q_A Chromosomal replication 83.5 0.51 1.7E-05 49.8 2.8 49 108-159 7-55 (324)
48 2p65_A Hypothetical protein PF 83.5 0.47 1.6E-05 44.6 2.3 30 130-159 32-61 (187)
49 2r62_A Cell division protease 83.5 0.34 1.2E-05 49.5 1.4 51 108-159 7-62 (268)
50 3h4m_A Proteasome-activating n 82.2 0.36 1.2E-05 49.7 1.0 52 108-159 13-69 (285)
51 1g8p_A Magnesium-chelatase 38 81.9 0.44 1.5E-05 50.3 1.5 44 108-159 20-63 (350)
52 3te6_A Regulatory protein SIR3 81.7 0.45 1.5E-05 51.6 1.6 26 134-159 38-63 (318)
53 3oja_B Anopheles plasmodium-re 81.4 11 0.00038 43.0 13.2 33 556-588 460-492 (597)
54 1ixz_A ATP-dependent metallopr 81.4 0.51 1.8E-05 47.9 1.8 51 108-159 12-67 (254)
55 3cf0_A Transitional endoplasmi 81.2 0.49 1.7E-05 49.9 1.6 52 108-159 11-67 (301)
56 4etp_B Spindle POLE BODY-assoc 81.1 4.8 0.00016 43.8 9.1 236 65-347 57-310 (333)
57 3a7o_A Autophagy protein 16; c 80.7 4.6 0.00016 34.7 6.9 59 557-632 16-74 (75)
58 3bos_A Putative DNA replicatio 80.2 0.88 3E-05 44.7 3.0 45 109-159 25-70 (242)
59 2v1u_A Cell division control p 79.8 0.52 1.8E-05 49.9 1.3 39 120-159 23-62 (387)
60 3s4r_A Vimentin; alpha-helix, 79.8 2.4 8.2E-05 38.2 5.4 86 700-845 6-91 (93)
61 3b9p_A CG5977-PA, isoform A; A 79.3 0.55 1.9E-05 48.7 1.2 52 108-159 17-72 (297)
62 4b4t_L 26S protease subunit RP 78.0 1.2 4.2E-05 50.3 3.6 51 109-159 178-233 (437)
63 1d2n_A N-ethylmaleimide-sensit 77.4 1.4 4.8E-05 45.2 3.6 22 138-159 61-82 (272)
64 3d8b_A Fidgetin-like protein 1 77.3 0.62 2.1E-05 50.5 0.9 52 108-159 80-135 (357)
65 2qz4_A Paraplegin; AAA+, SPG7, 77.0 0.48 1.7E-05 47.8 -0.1 21 139-159 37-57 (262)
66 3vkg_A Dynein heavy chain, cyt 75.7 33 0.0011 47.7 16.7 54 783-836 2015-2068(3245)
67 1iy2_A ATP-dependent metallopr 75.4 0.46 1.6E-05 49.2 -0.8 51 108-159 36-91 (278)
68 2chg_A Replication factor C sm 75.3 1.3 4.5E-05 42.4 2.5 22 138-159 35-56 (226)
69 1xwi_A SKD1 protein; VPS4B, AA 75.2 0.92 3.1E-05 48.5 1.5 51 109-159 9-63 (322)
70 2kjq_A DNAA-related protein; s 75.1 1 3.6E-05 42.9 1.7 18 142-159 37-54 (149)
71 1vec_A ATP-dependent RNA helic 74.9 1.4 4.7E-05 42.8 2.6 25 133-159 34-58 (206)
72 2z4s_A Chromosomal replication 74.9 1.1 3.8E-05 50.1 2.2 48 108-159 101-148 (440)
73 1qde_A EIF4A, translation init 74.6 1.2 4.1E-05 44.0 2.1 24 133-158 45-68 (224)
74 3na7_A HP0958; flagellar bioge 74.1 73 0.0025 33.0 15.6 28 609-636 58-85 (256)
75 1fnn_A CDC6P, cell division co 73.7 1.8 6E-05 46.1 3.3 28 132-159 32-62 (389)
76 4b4t_M 26S protease regulatory 73.6 1.1 3.8E-05 50.6 1.7 92 68-159 124-233 (434)
77 1lv7_A FTSH; alpha/beta domain 73.4 0.72 2.5E-05 46.9 0.1 51 108-159 8-63 (257)
78 2gxq_A Heat resistant RNA depe 73.1 1.4 4.8E-05 42.7 2.1 23 134-158 33-55 (207)
79 3syl_A Protein CBBX; photosynt 72.6 1.1 3.9E-05 46.3 1.5 21 139-159 65-85 (309)
80 2jee_A YIIU; FTSZ, septum, coi 71.9 3.5 0.00012 36.4 4.1 32 684-715 25-63 (81)
81 4b4t_K 26S protease regulatory 71.4 2 7E-05 48.4 3.2 51 109-159 169-224 (428)
82 3uk6_A RUVB-like 2; hexameric 70.2 1.9 6.5E-05 45.9 2.5 47 108-159 40-88 (368)
83 3dkp_A Probable ATP-dependent 70.1 1.8 6E-05 43.5 2.1 24 133-158 60-83 (245)
84 1sxj_C Activator 1 40 kDa subu 69.4 2.1 7.1E-05 45.6 2.6 42 110-159 23-64 (340)
85 3bor_A Human initiation factor 69.3 1.2 4E-05 45.0 0.6 24 133-158 61-84 (237)
86 3eie_A Vacuolar protein sortin 69.3 1.3 4.5E-05 47.0 1.0 51 109-159 15-69 (322)
87 2qp9_X Vacuolar protein sortin 69.1 1.5 5.2E-05 47.5 1.5 52 108-159 47-102 (355)
88 4b4t_J 26S protease regulatory 68.7 3.6 0.00012 46.1 4.4 51 109-159 145-200 (405)
89 1sxj_D Activator 1 41 kDa subu 68.6 1.9 6.5E-05 45.3 2.1 28 132-159 49-76 (353)
90 2x8a_A Nuclear valosin-contain 68.4 0.68 2.3E-05 48.5 -1.4 51 109-159 7-62 (274)
91 1p9r_A General secretion pathw 67.8 2.1 7.2E-05 48.0 2.3 29 131-159 157-185 (418)
92 2qby_A CDC6 homolog 1, cell di 67.7 1.7 5.9E-05 45.8 1.5 21 139-159 43-63 (386)
93 2pl3_A Probable ATP-dependent 67.7 2.1 7.2E-05 42.7 2.1 24 133-158 56-79 (236)
94 2qby_B CDC6 homolog 3, cell di 67.7 2.2 7.5E-05 45.4 2.3 46 109-159 17-63 (384)
95 2v4h_A NF-kappa-B essential mo 67.4 18 0.00061 33.6 7.9 26 609-634 36-61 (110)
96 1t6n_A Probable ATP-dependent 67.1 2.1 7.3E-05 42.1 2.0 25 133-159 45-69 (220)
97 3b6e_A Interferon-induced heli 66.6 1.2 4E-05 43.2 -0.0 23 135-159 44-66 (216)
98 3nmd_A CGMP dependent protein 66.6 12 0.00042 32.3 6.2 19 609-627 45-63 (72)
99 3cve_A Homer protein homolog 1 66.1 12 0.00041 32.4 6.1 64 557-630 5-68 (72)
100 3jvv_A Twitching mobility prot 65.4 2.3 7.9E-05 46.6 2.0 28 132-159 114-141 (356)
101 2c9o_A RUVB-like 1; hexameric 65.1 3.1 0.0001 46.6 3.0 47 108-159 33-81 (456)
102 3ly5_A ATP-dependent RNA helic 65.1 2.1 7.2E-05 44.0 1.5 25 132-158 84-108 (262)
103 3fmo_B ATP-dependent RNA helic 65.0 2.4 8.3E-05 44.7 2.0 26 133-158 123-148 (300)
104 1wrb_A DJVLGB; RNA helicase, D 64.9 2.4 8.3E-05 42.8 1.9 24 134-159 55-78 (253)
105 1go4_E MAD1 (mitotic arrest de 64.6 10 0.00035 34.7 5.7 69 684-755 17-95 (100)
106 2oto_A M protein; helical coil 64.5 1E+02 0.0035 29.6 13.7 32 724-755 46-77 (155)
107 3eiq_A Eukaryotic initiation f 64.5 2.8 9.5E-05 44.8 2.4 24 133-158 71-94 (414)
108 2zan_A Vacuolar protein sortin 64.1 1.6 5.5E-05 48.9 0.4 52 108-159 130-185 (444)
109 3iuy_A Probable ATP-dependent 64.1 2.7 9.2E-05 41.7 2.0 25 133-159 51-75 (228)
110 3nmd_A CGMP dependent protein 63.8 17 0.00058 31.4 6.6 30 607-636 22-51 (72)
111 3llm_A ATP-dependent RNA helic 63.6 2.4 8.3E-05 42.7 1.6 27 131-159 68-94 (235)
112 3mq7_A Bone marrow stromal ant 63.6 44 0.0015 31.3 9.8 27 729-755 86-112 (121)
113 3cvf_A Homer-3, homer protein 62.6 9.8 0.00034 33.4 5.0 65 556-630 10-74 (79)
114 3fe2_A Probable ATP-dependent 62.5 2.8 9.5E-05 42.2 1.8 23 134-158 61-83 (242)
115 3hnw_A Uncharacterized protein 62.5 21 0.00072 34.2 7.9 29 685-713 102-130 (138)
116 3co5_A Putative two-component 62.1 4.4 0.00015 37.7 3.0 20 140-159 26-45 (143)
117 3hu3_A Transitional endoplasmi 61.6 2.6 9E-05 48.0 1.6 51 109-159 201-256 (489)
118 2oxc_A Probable ATP-dependent 61.6 3.2 0.00011 41.4 2.1 22 135-158 57-78 (230)
119 3ber_A Probable ATP-dependent 61.4 3.1 0.00011 42.4 2.0 24 133-158 74-97 (249)
120 2v4h_A NF-kappa-B essential mo 61.2 71 0.0024 29.7 10.6 62 557-635 43-107 (110)
121 1njg_A DNA polymerase III subu 60.4 4 0.00014 39.2 2.5 18 142-159 46-63 (250)
122 2eyu_A Twitching motility prot 60.3 3.4 0.00012 43.1 2.1 20 140-159 24-43 (261)
123 3fmp_B ATP-dependent RNA helic 59.5 3.5 0.00012 45.8 2.1 26 133-158 123-148 (479)
124 1ofh_A ATP-dependent HSL prote 59.5 3.9 0.00013 42.0 2.3 19 141-159 50-68 (310)
125 1go4_E MAD1 (mitotic arrest de 59.5 13 0.00045 34.0 5.5 28 557-584 17-44 (100)
126 2v71_A Nuclear distribution pr 59.3 1.5E+02 0.0052 29.9 14.5 84 728-823 88-171 (189)
127 4b4t_H 26S protease regulatory 59.0 1.8 6.3E-05 49.4 -0.3 51 109-159 206-261 (467)
128 1q0u_A Bstdead; DEAD protein, 58.7 2.4 8.1E-05 41.9 0.5 23 134-158 36-58 (219)
129 3fht_A ATP-dependent RNA helic 58.7 3.7 0.00013 43.7 2.1 26 133-158 56-81 (412)
130 2k48_A Nucleoprotein; viral pr 58.6 94 0.0032 28.6 10.8 73 513-587 31-103 (107)
131 2k48_A Nucleoprotein; viral pr 58.4 15 0.00051 33.8 5.6 68 560-639 36-103 (107)
132 3pey_A ATP-dependent RNA helic 58.4 3.7 0.00013 43.3 1.9 26 133-158 36-61 (395)
133 1tue_A Replication protein E1; 57.8 3.2 0.00011 42.7 1.3 27 133-159 48-76 (212)
134 4b4t_I 26S protease regulatory 57.6 11 0.00037 42.8 5.6 89 71-159 128-234 (437)
135 3pxg_A Negative regulator of g 57.6 6.1 0.00021 44.5 3.7 28 132-159 192-219 (468)
136 1u0j_A DNA replication protein 57.5 4.7 0.00016 42.8 2.6 30 130-159 90-122 (267)
137 2j0s_A ATP-dependent RNA helic 57.4 3.8 0.00013 43.9 1.9 24 133-158 68-91 (410)
138 1gvn_B Zeta; postsegregational 57.1 7.1 0.00024 41.0 3.9 32 128-159 15-51 (287)
139 1iqp_A RFCS; clamp loader, ext 56.9 4.8 0.00016 41.5 2.5 22 138-159 43-64 (327)
140 3n70_A Transport activator; si 56.0 3.3 0.00011 38.6 1.0 21 139-159 22-42 (145)
141 4fcw_A Chaperone protein CLPB; 55.8 3.7 0.00013 42.4 1.4 18 142-159 48-65 (311)
142 2r44_A Uncharacterized protein 55.6 3.3 0.00011 43.6 1.0 18 142-159 47-64 (331)
143 3ryc_E Stathmin-4; alpha-tubul 55.3 59 0.002 31.5 9.5 63 782-844 43-122 (143)
144 1w5s_A Origin recognition comp 55.2 5.9 0.0002 42.4 2.9 26 134-159 40-70 (412)
145 2chq_A Replication factor C sm 54.8 4.6 0.00016 41.5 2.0 23 137-159 34-56 (319)
146 1s2m_A Putative ATP-dependent 54.8 4.3 0.00015 43.3 1.7 23 134-158 53-75 (400)
147 3o0z_A RHO-associated protein 54.5 1E+02 0.0035 30.6 11.3 31 606-636 50-80 (168)
148 2z0m_A 337AA long hypothetical 54.2 4.7 0.00016 41.5 1.9 24 134-159 26-49 (337)
149 3pfi_A Holliday junction ATP-d 54.2 6.3 0.00022 41.4 2.9 45 110-159 27-73 (338)
150 1hqc_A RUVB; extended AAA-ATPa 54.2 7.7 0.00027 40.2 3.6 21 139-159 36-56 (324)
151 2fz4_A DNA repair protein RAD2 53.8 4.8 0.00016 41.0 1.8 23 135-159 104-126 (237)
152 2ic6_A Nucleocapsid protein; h 53.8 22 0.00074 31.2 5.6 68 560-639 6-73 (78)
153 3vkg_A Dynein heavy chain, cyt 52.9 3.1E+02 0.011 38.5 19.2 66 685-750 2041-2106(3245)
154 3h1t_A Type I site-specific re 52.5 6.3 0.00021 45.1 2.7 28 131-159 189-216 (590)
155 2i4i_A ATP-dependent RNA helic 52.1 5.4 0.00018 42.7 2.0 23 134-158 47-69 (417)
156 2oap_1 GSPE-2, type II secreti 51.9 6.1 0.00021 45.4 2.5 21 137-159 258-278 (511)
157 2ke4_A CDC42-interacting prote 51.8 61 0.0021 29.4 8.6 70 556-637 19-88 (98)
158 2ewv_A Twitching motility prot 50.6 4.3 0.00015 44.5 1.0 20 140-159 135-154 (372)
159 2dhr_A FTSH; AAA+ protein, hex 50.1 3.4 0.00012 47.4 0.0 51 108-159 27-82 (499)
160 1ci6_A Transcription factor AT 49.7 18 0.00063 30.1 4.4 39 684-722 21-59 (63)
161 2ce7_A Cell division protein F 49.6 3.9 0.00013 46.6 0.4 51 108-159 12-67 (476)
162 4emc_A Monopolin complex subun 49.6 30 0.001 34.9 6.7 30 605-634 28-57 (190)
163 3u61_B DNA polymerase accessor 49.1 9.4 0.00032 39.9 3.2 20 140-159 47-66 (324)
164 1in4_A RUVB, holliday junction 49.1 8.3 0.00028 41.1 2.9 18 142-159 52-69 (334)
165 1n0w_A DNA repair protein RAD5 48.8 6.5 0.00022 38.8 1.9 29 131-159 11-42 (243)
166 3fho_A ATP-dependent RNA helic 48.6 6.9 0.00024 44.2 2.2 24 135-158 152-175 (508)
167 1sxj_E Activator 1 40 kDa subu 48.5 6.5 0.00022 41.4 1.9 16 144-159 39-54 (354)
168 4fi5_A Nucleoprotein; structur 48.1 17 0.00057 33.8 4.2 70 559-640 22-91 (113)
169 1xti_A Probable ATP-dependent 47.8 6.8 0.00023 41.4 1.9 24 133-158 39-62 (391)
170 2p5t_B PEZT; postsegregational 47.7 9.3 0.00032 39.0 2.9 37 123-159 13-50 (253)
171 3m91_A Proteasome-associated A 47.6 13 0.00045 30.1 3.1 28 728-755 9-36 (51)
172 3ol1_A Vimentin; structural ge 47.5 1.7E+02 0.0058 27.1 11.2 51 683-743 66-116 (119)
173 3pvs_A Replication-associated 47.2 6.1 0.00021 44.5 1.5 28 132-159 41-68 (447)
174 3oiy_A Reverse gyrase helicase 46.9 6.6 0.00022 42.5 1.7 24 133-158 30-53 (414)
175 3i5x_A ATP-dependent RNA helic 46.8 8.2 0.00028 43.6 2.5 27 132-158 102-128 (563)
176 1rif_A DAR protein, DNA helica 46.8 4.7 0.00016 41.5 0.5 22 136-159 125-146 (282)
177 3tnu_A Keratin, type I cytoske 46.6 1.5E+02 0.0051 27.7 10.8 21 562-582 34-54 (131)
178 4b3f_X DNA-binding protein smu 46.4 7.2 0.00025 45.6 2.0 26 133-159 198-223 (646)
179 1jr3_A DNA polymerase III subu 46.4 12 0.00041 39.5 3.5 19 141-159 38-56 (373)
180 1sxj_B Activator 1 37 kDa subu 46.1 8.3 0.00028 39.6 2.2 22 138-159 39-60 (323)
181 1qvr_A CLPB protein; coiled co 46.1 6.2 0.00021 47.8 1.4 30 130-159 180-209 (854)
182 3hws_A ATP-dependent CLP prote 46.0 6.8 0.00023 42.1 1.6 19 141-159 51-69 (363)
183 2w0m_A SSO2452; RECA, SSPF, un 45.7 8.3 0.00028 37.5 2.0 29 131-159 10-41 (235)
184 3cf2_A TER ATPase, transitiona 45.4 11 0.00038 45.7 3.5 51 109-159 201-256 (806)
185 1hv8_A Putative ATP-dependent 45.3 7.5 0.00026 40.4 1.7 25 134-159 38-62 (367)
186 2db3_A ATP-dependent RNA helic 44.9 7.9 0.00027 42.7 1.9 23 134-158 88-110 (434)
187 1fuu_A Yeast initiation factor 44.7 4.9 0.00017 42.5 0.2 24 133-158 52-75 (394)
188 3jsv_C NF-kappa-B essential mo 44.4 61 0.0021 29.3 7.2 33 685-717 60-92 (94)
189 4a2p_A RIG-I, retinoic acid in 44.0 8.7 0.0003 42.7 2.1 35 793-827 516-551 (556)
190 2ic9_A Nucleocapsid protein; h 43.8 34 0.0012 31.0 5.4 68 560-639 6-73 (96)
191 4g1a_A AQ-C16C19 peptide; heli 43.4 10 0.00035 27.0 1.6 17 613-632 12-28 (32)
192 2cvh_A DNA repair and recombin 43.4 8.9 0.0003 37.2 1.8 29 131-159 7-38 (220)
193 3m91_A Proteasome-associated A 43.3 28 0.00095 28.2 4.3 40 695-741 11-50 (51)
194 4emc_A Monopolin complex subun 43.0 20 0.00068 36.2 4.2 25 610-634 12-36 (190)
195 2v1x_A ATP-dependent DNA helic 42.8 12 0.0004 43.6 3.0 25 133-159 53-77 (591)
196 3jsv_C NF-kappa-B essential mo 42.3 46 0.0016 30.1 6.0 62 558-636 22-86 (94)
197 3tbk_A RIG-I helicase domain; 42.2 9.7 0.00033 42.1 2.1 33 795-827 517-550 (555)
198 1w36_D RECD, exodeoxyribonucle 42.0 8.3 0.00028 45.0 1.6 19 141-159 164-182 (608)
199 3hnw_A Uncharacterized protein 41.8 80 0.0027 30.2 8.1 30 725-754 107-136 (138)
200 1ojl_A Transcriptional regulat 41.7 11 0.00036 39.9 2.2 21 139-159 23-43 (304)
201 2ic6_A Nucleocapsid protein; h 41.3 1.5E+02 0.0052 25.9 8.9 72 514-587 2-73 (78)
202 3c8u_A Fructokinase; YP_612366 41.1 16 0.00055 35.8 3.3 31 129-159 8-40 (208)
203 4a74_A DNA repair and recombin 40.6 11 0.00038 36.7 2.0 29 131-159 12-43 (231)
204 2fwr_A DNA repair protein RAD2 39.9 10 0.00035 41.8 1.8 23 135-159 104-126 (472)
205 2v66_B Nuclear distribution pr 39.8 2.3E+02 0.008 26.2 11.3 33 783-815 78-110 (111)
206 3upu_A ATP-dependent DNA helic 39.7 13 0.00046 41.3 2.8 37 118-159 27-63 (459)
207 1um8_A ATP-dependent CLP prote 39.6 7.4 0.00025 41.9 0.6 19 141-159 72-90 (376)
208 1wp9_A ATP-dependent RNA helic 39.6 11 0.00036 40.4 1.9 24 133-159 18-41 (494)
209 3b85_A Phosphate starvation-in 39.3 12 0.00042 37.5 2.2 27 131-159 14-40 (208)
210 1ypw_A Transitional endoplasmi 39.1 14 0.00047 44.7 2.9 52 108-159 200-256 (806)
211 3ol1_A Vimentin; structural ge 39.0 2.1E+02 0.0072 26.4 10.3 85 724-844 16-103 (119)
212 4gp7_A Metallophosphoesterase; 38.6 8.1 0.00028 37.0 0.6 17 143-159 11-27 (171)
213 3htk_A Structural maintenance 38.6 88 0.003 25.1 6.8 56 516-577 3-58 (60)
214 3sqw_A ATP-dependent RNA helic 38.4 13 0.00045 42.5 2.5 27 132-158 51-77 (579)
215 3b9q_A Chloroplast SRP recepto 38.2 16 0.00055 38.8 3.0 18 142-159 101-118 (302)
216 4gl2_A Interferon-induced heli 38.2 11 0.00039 43.6 1.9 25 133-159 16-40 (699)
217 2jlq_A Serine protease subunit 38.1 11 0.00038 42.0 1.7 25 133-158 12-36 (451)
218 3lw7_A Adenylate kinase relate 37.9 9.1 0.00031 35.2 0.9 17 143-159 3-19 (179)
219 1c4o_A DNA nucleotide excision 37.9 15 0.00052 43.3 3.0 45 109-159 2-46 (664)
220 3nbx_X ATPase RAVA; AAA+ ATPas 37.8 13 0.00045 42.6 2.3 26 132-159 34-59 (500)
221 2gk6_A Regulator of nonsense t 37.7 11 0.00039 43.9 1.9 18 142-159 196-213 (624)
222 1rz3_A Hypothetical protein rb 37.3 17 0.00059 35.5 2.8 19 141-159 22-40 (201)
223 3tnu_B Keratin, type II cytosk 36.5 2.6E+02 0.009 25.9 10.8 18 619-636 76-93 (129)
224 3pxi_A Negative regulator of g 36.4 19 0.00066 42.8 3.5 29 131-159 191-219 (758)
225 2dr3_A UPF0273 protein PH0284; 36.3 12 0.00041 36.9 1.5 27 133-159 12-41 (247)
226 1wlq_A Geminin; coiled-coil; 2 36.2 35 0.0012 30.2 4.2 42 685-726 37-78 (83)
227 3lfu_A DNA helicase II; SF1 he 35.9 11 0.00036 43.5 1.2 20 140-159 21-40 (647)
228 4ag6_A VIRB4 ATPase, type IV s 35.7 9 0.00031 41.6 0.5 18 142-159 36-53 (392)
229 3e70_C DPA, signal recognition 35.6 20 0.00069 38.6 3.3 18 142-159 130-147 (328)
230 2ykg_A Probable ATP-dependent 35.5 14 0.00047 42.9 2.1 23 134-158 23-45 (696)
231 3swk_A Vimentin; cytoskeleton, 35.3 1.7E+02 0.006 25.6 8.7 86 729-847 1-86 (86)
232 2qag_C Septin-7; cell cycle, c 35.2 11 0.00036 42.4 1.0 24 136-159 26-49 (418)
233 3pxi_A Negative regulator of g 34.9 21 0.00072 42.4 3.5 17 143-159 523-539 (758)
234 2dgc_A Protein (GCN4); basic d 34.7 24 0.00082 29.5 2.9 30 729-758 31-60 (63)
235 3tnu_A Keratin, type I cytoske 34.7 1.4E+02 0.0046 28.0 8.5 58 783-843 46-103 (131)
236 3tr0_A Guanylate kinase, GMP k 34.7 10 0.00035 36.5 0.6 17 143-159 9-25 (205)
237 3s9g_A Protein hexim1; cyclin 34.7 75 0.0026 29.0 6.1 52 690-755 41-92 (104)
238 2ic9_A Nucleocapsid protein; h 34.3 2E+02 0.0069 26.1 8.9 73 514-588 2-74 (96)
239 1r6b_X CLPA protein; AAA+, N-t 34.3 18 0.0006 42.9 2.7 29 131-159 197-225 (758)
240 1qvr_A CLPB protein; coiled co 34.2 23 0.00077 42.9 3.7 18 142-159 589-606 (854)
241 3tau_A Guanylate kinase, GMP k 34.1 12 0.00041 36.9 1.1 18 142-159 9-26 (208)
242 2qnr_A Septin-2, protein NEDD5 33.5 11 0.00038 39.9 0.8 24 136-159 13-36 (301)
243 1uii_A Geminin; human, DNA rep 33.4 31 0.001 30.6 3.4 37 685-721 45-81 (83)
244 1e9r_A Conjugal transfer prote 33.3 9.5 0.00033 41.9 0.2 18 141-158 53-70 (437)
245 2r8r_A Sensor protein; KDPD, P 32.9 10 0.00036 39.3 0.4 18 142-159 7-24 (228)
246 3a00_A Guanylate kinase, GMP k 32.8 11 0.00037 36.4 0.5 17 143-159 3-19 (186)
247 1sxj_A Activator 1 95 kDa subu 32.7 16 0.00056 41.4 2.0 19 141-159 77-95 (516)
248 1zp6_A Hypothetical protein AT 32.7 12 0.00042 35.6 0.9 18 142-159 10-27 (191)
249 2ocy_A RAB guanine nucleotide 32.4 3.6E+02 0.012 26.3 15.6 38 788-825 107-144 (154)
250 1ly1_A Polynucleotide kinase; 32.1 13 0.00043 34.8 0.8 18 142-159 3-20 (181)
251 3tnu_B Keratin, type II cytosk 32.0 1.6E+02 0.0055 27.4 8.5 57 784-843 45-101 (129)
252 3sop_A Neuronal-specific septi 32.0 12 0.00041 39.1 0.7 20 140-159 1-20 (270)
253 2px0_A Flagellar biosynthesis 32.0 19 0.00066 38.1 2.3 18 142-159 106-123 (296)
254 1kgd_A CASK, peripheral plasma 31.8 12 0.00041 36.0 0.6 17 143-159 7-23 (180)
255 2og2_A Putative signal recogni 31.6 24 0.00083 38.6 3.1 18 142-159 158-175 (359)
256 1r6b_X CLPA protein; AAA+, N-t 30.9 23 0.00077 42.0 2.9 18 142-159 489-506 (758)
257 2eqb_B RAB guanine nucleotide 30.7 3.1E+02 0.011 24.9 10.3 55 687-741 6-60 (97)
258 1zxa_A CGMP-dependent protein 30.7 57 0.0019 27.8 4.5 39 783-821 12-50 (67)
259 3o0z_A RHO-associated protein 30.7 4.1E+02 0.014 26.3 14.1 136 606-755 8-149 (168)
260 2oca_A DAR protein, ATP-depend 30.5 14 0.00048 41.2 1.0 16 144-159 131-146 (510)
261 2e7s_A RAB guanine nucleotide 30.5 2.2E+02 0.0074 27.3 9.0 108 684-823 23-130 (135)
262 3e1s_A Exodeoxyribonuclease V, 30.4 18 0.00061 42.0 1.9 19 141-159 204-222 (574)
263 3trf_A Shikimate kinase, SK; a 30.4 14 0.00048 35.1 0.8 17 143-159 7-23 (185)
264 1gm5_A RECG; helicase, replica 29.8 20 0.00067 43.4 2.1 28 132-159 380-407 (780)
265 1lvg_A Guanylate kinase, GMP k 29.8 13 0.00043 36.6 0.4 17 143-159 6-22 (198)
266 2xzl_A ATP-dependent helicase 29.6 18 0.00062 43.8 1.8 18 142-159 376-393 (802)
267 4a4z_A Antiviral helicase SKI2 29.4 21 0.00073 44.2 2.4 23 133-157 48-70 (997)
268 2ehv_A Hypothetical protein PH 29.4 14 0.00049 36.4 0.7 17 143-159 32-48 (251)
269 3m9b_A Proteasome-associated A 29.4 43 0.0015 35.3 4.3 37 697-747 58-94 (251)
270 1qhx_A CPT, protein (chloramph 29.3 15 0.00051 34.5 0.8 18 142-159 4-21 (178)
271 2qen_A Walker-type ATPase; unk 29.2 23 0.00077 36.6 2.2 18 142-159 32-49 (350)
272 1j8m_F SRP54, signal recogniti 29.1 40 0.0014 35.6 4.2 17 143-159 100-116 (297)
273 2wjy_A Regulator of nonsense t 29.1 19 0.00066 43.6 1.9 18 142-159 372-389 (800)
274 1rj9_A FTSY, signal recognitio 29.0 16 0.00054 39.0 1.0 18 142-159 103-120 (304)
275 2j41_A Guanylate kinase; GMP, 29.0 14 0.00049 35.4 0.6 17 143-159 8-24 (207)
276 1ye8_A Protein THEP1, hypothet 28.9 13 0.00046 36.2 0.4 16 144-159 3-18 (178)
277 1odf_A YGR205W, hypothetical 3 28.8 27 0.00094 36.8 2.8 37 123-159 11-49 (290)
278 4a2q_A RIG-I, retinoic acid in 28.7 21 0.00071 42.7 2.1 34 794-827 758-792 (797)
279 3iij_A Coilin-interacting nucl 28.2 15 0.00051 34.8 0.6 18 142-159 12-29 (180)
280 1uaa_A REP helicase, protein ( 28.2 17 0.00057 42.6 1.1 20 140-159 14-33 (673)
281 2lw1_A ABC transporter ATP-bin 28.1 2.2E+02 0.0076 24.8 8.2 30 555-584 18-47 (89)
282 3he5_A Synzip1; heterodimeric 28.0 1.3E+02 0.0044 23.2 5.6 25 813-837 20-44 (49)
283 2bdt_A BH3686; alpha-beta prot 28.0 15 0.00052 35.1 0.6 17 143-159 4-20 (189)
284 1lkx_A Myosin IE heavy chain; 27.9 29 0.001 41.5 3.1 35 123-158 76-111 (697)
285 3lnc_A Guanylate kinase, GMP k 27.9 18 0.00062 36.0 1.2 17 143-159 29-45 (231)
286 1lq7_A Alpha3W; three helix bu 27.7 1.3E+02 0.0043 24.6 5.8 52 519-570 10-66 (67)
287 4a2w_A RIG-I, retinoic acid in 27.6 21 0.00073 43.7 2.0 24 134-159 258-281 (936)
288 2yhs_A FTSY, cell division pro 27.5 29 0.00099 40.0 2.9 17 143-159 295-311 (503)
289 3kta_A Chromosome segregation 27.5 16 0.00054 34.7 0.6 17 143-159 28-44 (182)
290 1gmj_A ATPase inhibitor; coile 27.3 1.3E+02 0.0043 26.8 6.2 20 827-846 61-80 (84)
291 1moz_A ARL1, ADP-ribosylation 27.3 29 0.001 32.1 2.5 30 130-159 6-36 (183)
292 2v6i_A RNA helicase; membrane, 27.1 23 0.00079 39.1 2.0 16 143-158 4-19 (431)
293 3qne_A Seryl-tRNA synthetase, 26.9 1.4E+02 0.0049 34.1 8.4 64 518-591 47-110 (485)
294 2z83_A Helicase/nucleoside tri 26.6 23 0.00078 39.5 1.8 16 143-158 23-38 (459)
295 1oyw_A RECQ helicase, ATP-depe 26.6 14 0.00049 42.0 0.1 25 133-159 34-58 (523)
296 2gza_A Type IV secretion syste 26.5 16 0.00055 39.7 0.5 21 137-159 173-193 (361)
297 1w9i_A Myosin II heavy chain; 26.4 32 0.0011 41.6 3.1 35 123-158 154-189 (770)
298 1gu4_A CAAT/enhancer binding p 26.4 51 0.0018 28.7 3.6 39 685-723 35-73 (78)
299 1kht_A Adenylate kinase; phosp 26.2 19 0.00066 33.9 1.0 18 142-159 4-21 (192)
300 2pt7_A CAG-ALFA; ATPase, prote 26.2 16 0.00055 39.2 0.5 22 136-159 168-189 (330)
301 2zj8_A DNA helicase, putative 26.0 18 0.00063 42.5 1.0 21 136-158 36-56 (720)
302 2v26_A Myosin VI; calmodulin-b 25.8 33 0.0011 41.5 3.1 35 123-158 122-157 (784)
303 1znw_A Guanylate kinase, GMP k 25.8 17 0.00059 35.6 0.6 17 143-159 22-38 (207)
304 3iox_A AGI/II, PA; alpha helix 25.8 6.6E+02 0.022 28.9 13.3 35 813-847 76-110 (497)
305 3a7p_A Autophagy protein 16; c 25.7 2.6E+02 0.0088 27.3 8.7 59 565-633 67-125 (152)
306 2yy0_A C-MYC-binding protein; 25.7 51 0.0018 26.7 3.2 24 685-708 25-48 (53)
307 3uie_A Adenylyl-sulfate kinase 25.6 23 0.00078 34.4 1.4 19 141-159 25-43 (200)
308 1g8x_A Myosin II heavy chain f 25.6 33 0.0011 42.8 3.1 35 123-158 154-189 (1010)
309 3vaa_A Shikimate kinase, SK; s 25.4 19 0.00067 34.9 0.9 17 143-159 27-43 (199)
310 2orw_A Thymidine kinase; TMTK, 25.4 17 0.00057 35.6 0.4 17 143-159 5-21 (184)
311 2fna_A Conserved hypothetical 25.4 28 0.00097 35.9 2.1 18 142-159 31-48 (357)
312 3kl4_A SRP54, signal recogniti 25.2 44 0.0015 37.6 3.8 18 142-159 98-115 (433)
313 2ycu_A Non muscle myosin 2C, a 25.2 35 0.0012 42.4 3.2 35 123-158 128-163 (995)
314 1kag_A SKI, shikimate kinase I 25.1 19 0.00064 33.7 0.7 17 143-159 6-22 (173)
315 1a93_B MAX protein, coiled coi 25.0 1E+02 0.0034 23.1 4.3 24 560-583 8-31 (34)
316 2dq0_A Seryl-tRNA synthetase; 24.9 1.6E+02 0.0055 33.3 8.3 65 517-591 44-108 (455)
317 1v5w_A DMC1, meiotic recombina 24.9 29 0.00099 37.3 2.2 30 130-159 108-140 (343)
318 1hjb_A Ccaat/enhancer binding 24.7 60 0.0021 28.9 3.8 39 685-723 35-73 (87)
319 2eyq_A TRCF, transcription-rep 24.7 39 0.0013 42.6 3.5 27 132-158 615-641 (1151)
320 1yks_A Genome polyprotein [con 24.6 24 0.00081 39.2 1.5 21 136-158 5-25 (440)
321 3dm5_A SRP54, signal recogniti 24.6 44 0.0015 37.8 3.6 19 141-159 100-118 (443)
322 2i3b_A HCR-ntpase, human cance 24.5 18 0.00062 35.7 0.5 17 143-159 3-19 (189)
323 3kb2_A SPBC2 prophage-derived 24.4 21 0.00072 33.0 0.8 17 143-159 3-19 (173)
324 3iv1_A Tumor susceptibility ge 24.3 1.3E+02 0.0045 26.3 5.7 44 788-834 34-77 (78)
325 2ze6_A Isopentenyl transferase 24.3 21 0.0007 36.6 0.8 16 143-158 3-18 (253)
326 1kk8_A Myosin heavy chain, str 24.2 35 0.0012 41.7 2.8 21 138-158 166-186 (837)
327 1w7j_A Myosin VA; motor protei 24.1 37 0.0013 41.2 3.1 35 123-158 138-173 (795)
328 1z6g_A Guanylate kinase; struc 24.1 18 0.00063 36.0 0.4 16 144-159 26-41 (218)
329 2wvr_A Geminin; DNA replicatio 23.9 63 0.0022 33.0 4.2 48 685-743 114-161 (209)
330 1f2t_A RAD50 ABC-ATPase; DNA d 23.9 22 0.00076 33.5 0.9 17 143-159 25-41 (149)
331 1knq_A Gluconate kinase; ALFA/ 23.6 21 0.00071 33.6 0.6 18 142-159 9-26 (175)
332 4db1_A Myosin-7; S1DC, cardiac 23.5 39 0.0013 41.0 3.1 35 123-158 153-188 (783)
333 2ga8_A Hypothetical 39.9 kDa p 23.4 44 0.0015 36.9 3.2 22 138-159 21-42 (359)
334 3t5d_A Septin-7; GTP-binding p 23.3 21 0.00071 36.7 0.6 22 137-158 4-25 (274)
335 1m1j_B Fibrinogen beta chain; 23.3 3.7E+02 0.013 30.6 10.8 19 620-638 177-195 (464)
336 2rhm_A Putative kinase; P-loop 23.3 21 0.00071 33.8 0.6 18 142-159 6-23 (193)
337 1tev_A UMP-CMP kinase; ploop, 23.0 23 0.00078 33.4 0.8 17 142-158 4-20 (196)
338 1uf9_A TT1252 protein; P-loop, 23.0 27 0.00093 33.3 1.4 21 138-158 5-25 (203)
339 1gku_B Reverse gyrase, TOP-RG; 22.9 33 0.0011 42.7 2.4 21 134-156 66-86 (1054)
340 2i1q_A DNA repair and recombin 22.7 32 0.0011 36.1 2.0 31 129-159 83-116 (322)
341 2d7d_A Uvrabc system protein B 22.7 40 0.0014 39.7 3.0 46 109-159 5-50 (661)
342 3cm0_A Adenylate kinase; ATP-b 22.6 24 0.00082 33.4 0.9 17 143-159 6-22 (186)
343 2v3c_C SRP54, signal recogniti 22.5 62 0.0021 36.2 4.3 18 142-159 100-117 (432)
344 2va8_A SSO2462, SKI2-type heli 22.5 28 0.00095 40.8 1.6 17 142-158 47-63 (715)
345 2z43_A DNA repair and recombin 22.5 31 0.0011 36.6 1.8 30 130-159 93-125 (324)
346 3rc3_A ATP-dependent RNA helic 22.4 22 0.00075 42.3 0.6 20 137-158 153-172 (677)
347 2r2a_A Uncharacterized protein 22.3 21 0.00072 35.7 0.4 17 143-159 7-23 (199)
348 4dzn_A Coiled-coil peptide CC- 22.2 1.1E+02 0.0039 21.9 4.0 22 559-580 9-30 (33)
349 2p6r_A Afuhel308 helicase; pro 22.2 19 0.00064 42.3 0.0 31 118-158 27-57 (702)
350 2qor_A Guanylate kinase; phosp 21.9 22 0.00075 34.7 0.5 17 143-159 14-30 (204)
351 2b8t_A Thymidine kinase; deoxy 21.9 24 0.00084 36.0 0.8 19 142-160 13-31 (223)
352 2vli_A Antibiotic resistance p 21.7 29 0.001 32.6 1.3 18 142-159 6-23 (183)
353 4anj_A Unconventional myosin-V 21.6 44 0.0015 41.8 3.1 35 123-158 126-161 (1052)
354 2zxx_A Geminin; coiled-coil, c 21.6 92 0.0032 27.3 4.2 39 686-724 34-72 (79)
355 3cvf_A Homer-3, homer protein 21.6 3.2E+02 0.011 23.9 7.6 32 607-638 9-40 (79)
356 2xau_A PRE-mRNA-splicing facto 21.6 37 0.0013 40.8 2.4 16 143-158 111-126 (773)
357 1l8d_A DNA double-strand break 21.5 3.8E+02 0.013 23.7 8.7 26 611-636 10-35 (112)
358 2bbw_A Adenylate kinase 4, AK4 21.5 24 0.00081 35.5 0.6 18 142-159 28-45 (246)
359 2xgj_A ATP-dependent RNA helic 21.5 30 0.001 43.0 1.6 53 567-636 757-809 (1010)
360 1cr0_A DNA primase/helicase; R 21.4 25 0.00085 36.3 0.7 27 133-159 25-53 (296)
361 1y63_A LMAJ004144AAA protein; 21.4 24 0.00083 33.8 0.6 17 143-159 12-28 (184)
362 1pzn_A RAD51, DNA repair and r 21.3 36 0.0012 36.7 2.0 30 130-159 117-149 (349)
363 1svm_A Large T antigen; AAA+ f 21.3 41 0.0014 37.0 2.5 18 142-159 170-187 (377)
364 3m6a_A ATP-dependent protease 21.2 24 0.00082 40.5 0.6 19 141-159 108-126 (543)
365 1vma_A Cell division protein F 21.2 28 0.00095 37.2 1.1 18 142-159 105-122 (306)
366 1kd8_B GABH BLL, GCN4 acid bas 21.1 1.4E+02 0.0048 22.5 4.4 29 813-841 4-32 (36)
367 1e6c_A Shikimate kinase; phosp 21.1 25 0.00085 32.7 0.6 17 143-159 4-20 (173)
368 1nks_A Adenylate kinase; therm 21.0 25 0.00085 33.1 0.6 17 143-159 3-19 (194)
369 3l9o_A ATP-dependent RNA helic 21.0 29 0.001 43.5 1.4 55 565-636 853-907 (1108)
370 3c3g_A Alpha/beta peptide with 21.0 47 0.0016 24.5 1.9 28 731-758 3-30 (33)
371 1a5t_A Delta prime, HOLB; zinc 20.6 46 0.0016 35.3 2.6 35 121-159 7-42 (334)
372 3asz_A Uridine kinase; cytidin 20.5 25 0.00086 34.1 0.5 17 143-159 8-24 (211)
373 1pjr_A PCRA; DNA repair, DNA r 20.4 28 0.00095 41.3 1.0 20 140-159 23-42 (724)
374 2qag_A Septin-2, protein NEDD5 20.4 27 0.00092 37.9 0.8 24 136-159 32-55 (361)
375 4eun_A Thermoresistant glucoki 20.3 26 0.0009 34.0 0.6 18 142-159 30-47 (200)
376 3k1j_A LON protease, ATP-depen 20.3 40 0.0014 39.0 2.3 40 110-159 39-78 (604)
377 2bwj_A Adenylate kinase 5; pho 20.3 28 0.00094 33.1 0.8 16 143-158 14-29 (199)
378 3o8b_A HCV NS3 protease/helica 20.3 36 0.0012 40.5 1.9 18 142-159 233-250 (666)
379 1dip_A Delta-sleep-inducing pe 20.2 37 0.0013 29.4 1.4 27 686-712 15-41 (78)
380 2zr9_A Protein RECA, recombina 20.2 36 0.0012 36.8 1.8 30 130-159 46-79 (349)
381 1w4r_A Thymidine kinase; type 20.2 30 0.001 35.0 1.0 26 133-158 12-38 (195)
382 2zts_A Putative uncharacterize 20.0 32 0.0011 33.7 1.2 27 133-159 19-48 (251)
No 1
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=1.6e-83 Score=707.01 Aligned_cols=307 Identities=40% Similarity=0.617 Sum_probs=281.6
Q ss_pred CCCCeEEEEecCCCChhhhccCCeE-EEecCCCEEEeCCCCCceeEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCee
Q 002982 65 SKENVTVTVRFRPLSPREIRQGEEI-AWYADGETILRNEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGT 143 (861)
Q Consensus 65 ~~~~VkV~VRVRPl~~~E~~~g~~~-~~~~d~~~iv~~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~t 143 (861)
+.++|+|+|||||++..|...+... +...++..+..........|.||+||+++++|++||+.++.|+|+++|+|||+|
T Consensus 4 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~t 83 (355)
T 1goj_A 4 SANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGT 83 (355)
T ss_dssp SSCBCEEEEEECCCCHHHHTTTCCBCEEECSTTEEEECSTTCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEE
T ss_pred CCCCeEEEEECCCCChHHhhcCCceEEEEcCCCeEEEccCCCccEEeeCeEECCCCccHHHHHHHHHHHHHHHhCCCcce
Confidence 3689999999999999998877654 344455566665555678999999999999999999999999999999999999
Q ss_pred EEEecccCCCCccccccCC---------------------------ccceeeEEEEEEecceeeeccCCCCCCceeeeCC
Q 002982 144 IFAYGVTSSGKTHTMHTPN---------------------------REFLLRVSYLEIYNEVVNDLLNPAGQNLRIREDS 196 (861)
Q Consensus 144 IfAYGqTGSGKTyTM~g~~---------------------------~~f~V~vSylEIYnE~I~DLL~p~~~~L~Ired~ 196 (861)
|||||||||||||||+|+. .+|.|+|||+|||||+|+|||++....+.|++++
T Consensus 84 ifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~e~~ 163 (355)
T 1goj_A 84 VFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEK 163 (355)
T ss_dssp EEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTCCSCCEEEET
T ss_pred EEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCccCCceeEEcC
Confidence 9999999999999998742 2589999999999999999999998899999998
Q ss_pred C-CeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeeeeeeeeecCCC
Q 002982 197 Q-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGS 275 (861)
Q Consensus 197 ~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~SkL~LVDLAGS 275 (861)
. |+||.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++.... ......|+|+|||||||
T Consensus 164 ~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~----~~~~~~skL~lVDLAGS 239 (355)
T 1goj_A 164 NRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVE----TGSAKSGQLFLVDLAGS 239 (355)
T ss_dssp TTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETT----TTEEEEEEEEEEECCCC
T ss_pred CCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccC----CCceeeeEEEEEECCCC
Confidence 5 699999999999999999999999999999999999999999999999999986432 23567899999999999
Q ss_pred CC-ccccccchhhhhhhhcccchHHHHHHHHHHhcCCCCcccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHHH
Q 002982 276 ES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETHN 354 (861)
Q Consensus 276 Er-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISPs~~~~eETLs 354 (861)
|| .++++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||+||||++|+|||||||+..+++||++
T Consensus 240 Er~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~~~ETl~ 319 (355)
T 1goj_A 240 EKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLS 319 (355)
T ss_dssp SCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHHHHHH
T ss_pred CcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccccHHHHHH
Confidence 99 57889999999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHcccccccccccccc
Q 002982 355 TLKFAHRAKHIEILAAQNKLE 375 (861)
Q Consensus 355 TLrFAsRAk~Ikn~~~~N~l~ 375 (861)
||+||+|||+|+|.|++|...
T Consensus 320 TL~fA~rak~I~n~~~vn~~~ 340 (355)
T 1goj_A 320 TLRFGMRAKSIKNKAKVNAEL 340 (355)
T ss_dssp HHHHHHHHHTCBCCCCCCSSS
T ss_pred HHHHHHHHhhccCCceeCCCC
Confidence 999999999999999999743
No 2
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=8.2e-84 Score=711.46 Aligned_cols=316 Identities=41% Similarity=0.640 Sum_probs=266.1
Q ss_pred CCCCeEEEEecCCCChhhhccCCeEEEec-C---CCEEEeCCCCCceeEeeceecCCCCcchhHHHHHHHHHHHHhhcCC
Q 002982 65 SKENVTVTVRFRPLSPREIRQGEEIAWYA-D---GETILRNEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGI 140 (861)
Q Consensus 65 ~~~~VkV~VRVRPl~~~E~~~g~~~~~~~-d---~~~iv~~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~Gy 140 (861)
.+++|+|+|||||+++.|...+...++.. + ...+... .+.|.||+||+++++|++||+.++.|+|+++|+||
T Consensus 9 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~~----~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~ 84 (365)
T 2y65_A 9 AEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIA----GKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGY 84 (365)
T ss_dssp CEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEET----TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTC
T ss_pred CCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEEC----CEEEeCceEecCCCCHHHHHHHhhhhHHHHHhCCC
Confidence 46899999999999999988777544432 2 2344432 36899999999999999999999999999999999
Q ss_pred CeeEEEecccCCCCccccccC--------------------------CccceeeEEEEEEecceeeeccCCCCCCceeee
Q 002982 141 NGTIFAYGVTSSGKTHTMHTP--------------------------NREFLLRVSYLEIYNEVVNDLLNPAGQNLRIRE 194 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~g~--------------------------~~~f~V~vSylEIYnE~I~DLL~p~~~~L~Ire 194 (861)
|+||||||||||||||||+|. +..|.|+|||+|||||+|+|||++...++.|++
T Consensus 85 n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~e 164 (365)
T 2y65_A 85 NGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHE 164 (365)
T ss_dssp CEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTTCCSBCEEE
T ss_pred ceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCCcCCceEEE
Confidence 999999999999999999863 235899999999999999999999888999999
Q ss_pred CCC-CeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeeeeeeeeecC
Q 002982 195 DSQ-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLA 273 (861)
Q Consensus 195 d~~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~SkL~LVDLA 273 (861)
|+. |+||.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++.... ......|+|+|||||
T Consensus 165 ~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~----~~~~~~skL~lVDLA 240 (365)
T 2y65_A 165 DKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLE----NQKKLSGKLYLVDLA 240 (365)
T ss_dssp CSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETT----TCCEEEEEEEEEECC
T ss_pred CCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecC----CCCEeEEEEEEEECC
Confidence 986 589999999999999999999999999999999999999999999999999876432 234678999999999
Q ss_pred CCCC-ccccccchhhhhhhhcccchHHHHHHHHHHhcCCCCcccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHH
Q 002982 274 GSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEET 352 (861)
Q Consensus 274 GSEr-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISPs~~~~eET 352 (861)
|||| .++++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||+||||++|+|||||||+..+++||
T Consensus 241 GSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ET 320 (365)
T 2y65_A 241 GSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESET 320 (365)
T ss_dssp CCCC----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCBGGGHHHH
T ss_pred CCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEecCccCCHHHH
Confidence 9999 678899999999999999999999999999998778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccccccccccccccchHHHHHHHHHHHH
Q 002982 353 HNTLKFAHRAKHIEILAAQNKLEDGQVKLQSRLEEEE 389 (861)
Q Consensus 353 LsTLrFAsRAk~Ikn~~~~N~l~~~~~~l~~~Le~ee 389 (861)
++||+||+|||+|+|.|++|...+. ..++++++++.
T Consensus 321 l~TL~fA~rak~I~n~~~~n~~~~~-~~~~~~~~~e~ 356 (365)
T 2y65_A 321 KSTLDFGRRAKTVKNVVCVNEELTA-EEWKRRYEKEK 356 (365)
T ss_dssp HHHHHHHHHHTTCEEECCCEEECCS-HHHHHC-----
T ss_pred HHHHHHHHHHhcccCcceeCCCCCH-HHHHHHHHHHH
Confidence 9999999999999999999975433 23444444443
No 3
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=2.7e-83 Score=722.54 Aligned_cols=309 Identities=38% Similarity=0.574 Sum_probs=255.3
Q ss_pred CCCCCeEEEEecCCCChhhhccCCeEEEecCC--CEE-EeCCC---------------CCceeEeeceecCCC-------
Q 002982 64 SSKENVTVTVRFRPLSPREIRQGEEIAWYADG--ETI-LRNED---------------NPSIAYAYDRVFGPT------- 118 (861)
Q Consensus 64 ~~~~~VkV~VRVRPl~~~E~~~g~~~~~~~d~--~~i-v~~~~---------------~~~~~F~FD~VF~~~------- 118 (861)
+..++|+|+|||||++++|...+..+++..++ ..+ +..+. ...+.|+||+||+++
T Consensus 35 ~~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~~ 114 (443)
T 2owm_A 35 DPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEHY 114 (443)
T ss_dssp CCCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTSTTC
T ss_pred CCCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCccC
Confidence 45789999999999999998877765544333 222 22211 125789999999864
Q ss_pred CcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccccC--------------------------CccceeeEEEE
Q 002982 119 TTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMHTP--------------------------NREFLLRVSYL 172 (861)
Q Consensus 119 atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~g~--------------------------~~~f~V~vSyl 172 (861)
++|++||+.++.|+|+.+|+|||+||||||||||||||||+|. +..|.|+|||+
T Consensus 115 asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS~l 194 (443)
T 2owm_A 115 ATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYF 194 (443)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEEEE
T ss_pred CCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHHHHHHHhhhcccCCceEEEEEEEE
Confidence 8999999999999999999999999999999999999999853 34689999999
Q ss_pred EEecceeeeccCCCC-----CCceeeeCCC-CeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEE
Q 002982 173 EIYNEVVNDLLNPAG-----QNLRIREDSQ-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTL 246 (861)
Q Consensus 173 EIYnE~I~DLL~p~~-----~~L~Ired~~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI 246 (861)
|||||.|+|||++.. ..|.|++|+. |+||.||+++.|.+++|++.+|..|.++|++++|.||..|||||+||+|
T Consensus 195 EIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti 274 (443)
T 2owm_A 195 EVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTI 274 (443)
T ss_dssp EEETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEEEEEEE
T ss_pred EEECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCCCeEEEEE
Confidence 999999999998732 3599999985 6999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCCCceeeeeeeeeeecCCCCC-ccccccchhhhhhhhcccchHHHHHHHHHHhcCCC-------------
Q 002982 247 TIESSPCGENSAGEAVNLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRA------------- 312 (861)
Q Consensus 247 ~Veq~~~~~~~~~~~~~~SkL~LVDLAGSEr-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~k~------------- 312 (861)
+|++..............|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|++++.
T Consensus 275 ~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~g~ 354 (443)
T 2owm_A 275 MLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGR 354 (443)
T ss_dssp EEEEEC-------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC----------------
T ss_pred EEEEeecccCCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhccccccccccccccccc
Confidence 9998654333333456789999999999999 57889999999999999999999999999987542
Q ss_pred --------CcccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHHHHHHHHHHccccccccccccc
Q 002982 313 --------THIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETHNTLKFAHRAKHIEILAAQNKL 374 (861)
Q Consensus 313 --------~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISPs~~~~eETLsTLrFAsRAk~Ikn~~~~N~l 374 (861)
.|||||||||||||||+||||++|+|||||||+ +++|||+||+||+|||+|+|.|++|++
T Consensus 355 ~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~vN~~ 422 (443)
T 2owm_A 355 GRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQV 422 (443)
T ss_dssp ---------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCCCCC
T ss_pred ccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccceeccc
Confidence 499999999999999999999999999999997 599999999999999999999999974
No 4
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=3e-83 Score=708.03 Aligned_cols=309 Identities=40% Similarity=0.608 Sum_probs=264.4
Q ss_pred CCCCCeEEEEecCCCChhhhccCCeEEE--ecCCCEEEeCCC-----CCceeEeeceecCCCCcchhHHHHHHHHHHHHh
Q 002982 64 SSKENVTVTVRFRPLSPREIRQGEEIAW--YADGETILRNED-----NPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGA 136 (861)
Q Consensus 64 ~~~~~VkV~VRVRPl~~~E~~~g~~~~~--~~d~~~iv~~~~-----~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~v 136 (861)
...++|+|+|||||++..|...+...++ ..+...+.+..+ ...+.|.||+||+++++|++||+.++.|+|+.+
T Consensus 18 ~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~ 97 (372)
T 3b6u_A 18 GSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLVDSV 97 (372)
T ss_dssp ---CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHHHHHH
Confidence 4478999999999999999887764333 334444444332 235789999999999999999999999999999
Q ss_pred hcCCCeeEEEecccCCCCccccccC-------------------------CccceeeEEEEEEecceeeeccCCCC-CCc
Q 002982 137 MDGINGTIFAYGVTSSGKTHTMHTP-------------------------NREFLLRVSYLEIYNEVVNDLLNPAG-QNL 190 (861)
Q Consensus 137 l~GyN~tIfAYGqTGSGKTyTM~g~-------------------------~~~f~V~vSylEIYnE~I~DLL~p~~-~~L 190 (861)
|+|||+||||||||||||||||+|. +..|.|+|||+|||||+|+|||++.. ..+
T Consensus 98 l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l 177 (372)
T 3b6u_A 98 LQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRL 177 (372)
T ss_dssp HTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTCSSCEEEEEEEEEEEETTEEEETTSSCTTCCB
T ss_pred hCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhhccCCceEEEEEEEEEeCCEEEECCCCCCCCCc
Confidence 9999999999999999999999874 23589999999999999999998764 579
Q ss_pred eeeeCCC-CeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeeeeeee
Q 002982 191 RIREDSQ-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHL 269 (861)
Q Consensus 191 ~Ired~~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~SkL~L 269 (861)
.|++++. |+||.||+++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++.....+ .......|+|+|
T Consensus 178 ~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~-~~~~~~~skL~l 256 (372)
T 3b6u_A 178 ELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLD-GENHIRVGKLNL 256 (372)
T ss_dssp CEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC------CCCEEEEEEEE
T ss_pred eEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCC-CCcceEEEEEEE
Confidence 9999985 69999999999999999999999999999999999999999999999999998654322 224567899999
Q ss_pred eecCCCCC-ccccccchhhhhhhhcccchHHHHHHHHHHhcCCCCcccCCCCchhhhhhccCCCCccceeEEeeCCCCCC
Q 002982 270 IDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSS 348 (861)
Q Consensus 270 VDLAGSEr-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISPs~~~ 348 (861)
|||||||| .++++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||+||||++|+|||||||+..+
T Consensus 257 VDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~ 336 (372)
T 3b6u_A 257 VDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYN 336 (372)
T ss_dssp EECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEEEEEEECCBGGG
T ss_pred EECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEEEEEEeCCcccC
Confidence 99999999 67889999999999999999999999999999887899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcccccccccccc
Q 002982 349 SEETHNTLKFAHRAKHIEILAAQNK 373 (861)
Q Consensus 349 ~eETLsTLrFAsRAk~Ikn~~~~N~ 373 (861)
++||++||+||+|||+|+|.|.+|+
T Consensus 337 ~~ETlsTLrfA~rak~I~n~~~~n~ 361 (372)
T 3b6u_A 337 VEETLTTLRYANRAKNIKNKPRVNE 361 (372)
T ss_dssp HHHHHHHHHHHHHHTTCBCCCCCCC
T ss_pred HHHHHHHHHHHHHHhhccccceecC
Confidence 9999999999999999999999996
No 5
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=4.4e-83 Score=706.19 Aligned_cols=308 Identities=36% Similarity=0.571 Sum_probs=259.3
Q ss_pred CCCeEEEEecCCCChhhhccCCeEEEecCCCEEE-eCCC---CCceeEeeceecCCC--------CcchhHHHHHHHHHH
Q 002982 66 KENVTVTVRFRPLSPREIRQGEEIAWYADGETIL-RNED---NPSIAYAYDRVFGPT--------TTTRHVYDIAAQHVV 133 (861)
Q Consensus 66 ~~~VkV~VRVRPl~~~E~~~g~~~~~~~d~~~iv-~~~~---~~~~~F~FD~VF~~~--------atQeeVY~~~~~plV 133 (861)
.++|+|+|||||++.+|...+..+++..++..++ .++. ...+.|.||+||++. ++|++||+.++.|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv 82 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEML 82 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTTCCBCEEEETTEEEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHH
T ss_pred CCCcEEEEECCCCChhhccCCCCeEEEECCCcEEEeccCCCCCCceEEecceEeecCccccccccCcHHHHHHHHHHHHH
Confidence 4689999999999999988777666655555444 3332 235789999999987 899999999999999
Q ss_pred HHhhcCCCeeEEEecccCCCCccccccCC--------------------------ccceeeEEEEEEecceeeeccCCCC
Q 002982 134 SGAMDGINGTIFAYGVTSSGKTHTMHTPN--------------------------REFLLRVSYLEIYNEVVNDLLNPAG 187 (861)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM~g~~--------------------------~~f~V~vSylEIYnE~I~DLL~p~~ 187 (861)
+++|+|||+||||||||||||||||+|+. ..|.|+|||+|||||+|+|||+|..
T Consensus 83 ~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~ 162 (366)
T 2zfi_A 83 QHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKN 162 (366)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCTTT
T ss_pred HHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEcccccc
Confidence 99999999999999999999999998752 2589999999999999999999864
Q ss_pred -CCceeeeCCC-CeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeee
Q 002982 188 -QNLRIREDSQ-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLS 265 (861)
Q Consensus 188 -~~L~Ired~~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~S 265 (861)
..|.|++++. |+||.||+++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++..............|
T Consensus 163 ~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s 242 (366)
T 2zfi_A 163 KGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVS 242 (366)
T ss_dssp CSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTCEEEEEE
T ss_pred CCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCCCccceeEe
Confidence 5799999985 79999999999999999999999999999999999999999999999999988654443333456789
Q ss_pred eeeeeecCCCCC-ccccccchhhhhhhhcccchHHHHHHHHHHhcC-----------CCCcccCCCCchhhhhhccCCCC
Q 002982 266 QLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDG-----------RATHIPYRDSKLTRLLQSSLSGH 333 (861)
Q Consensus 266 kL~LVDLAGSEr-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~-----------k~~hIPYRDSKLTrLLqdSLGGN 333 (861)
+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|+++ +..|||||||||||||||+||||
T Consensus 243 kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGn 322 (366)
T 2zfi_A 243 KISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGN 322 (366)
T ss_dssp EEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGSSTT
T ss_pred EEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHHHHhCCC
Confidence 999999999999 568899999999999999999999999999863 35799999999999999999999
Q ss_pred ccceeEEeeCCCCCChHHHHHHHHHHHHcccccccccccc
Q 002982 334 GRVSLICTVTPSSSSSEETHNTLKFAHRAKHIEILAAQNK 373 (861)
Q Consensus 334 skT~mIa~ISPs~~~~eETLsTLrFAsRAk~Ikn~~~~N~ 373 (861)
++|+|||||||+..+++||++||+||+|||+|+|.|.++.
T Consensus 323 skt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~~ 362 (366)
T 2zfi_A 323 SRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH 362 (366)
T ss_dssp CEEEEEEEECCBGGGHHHHHHHHHHHHHTC----------
T ss_pred ceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCCC
Confidence 9999999999999999999999999999999999999885
No 6
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=3.2e-82 Score=699.49 Aligned_cols=305 Identities=37% Similarity=0.529 Sum_probs=274.7
Q ss_pred CCCCeEEEEecCCCChhhhccCCeEEEecCCC-EEEe-CCCCCceeEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCe
Q 002982 65 SKENVTVTVRFRPLSPREIRQGEEIAWYADGE-TILR-NEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGING 142 (861)
Q Consensus 65 ~~~~VkV~VRVRPl~~~E~~~g~~~~~~~d~~-~iv~-~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~ 142 (861)
.+++|+|+|||||++..|...+..+.+...+. ++.. ......+.|.||+||+++++|++||+. +.|+|+.+|+|||+
T Consensus 3 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~v~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~~~l~G~n~ 81 (369)
T 3cob_A 3 MKGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFED-TKYLVQSAVDGYNV 81 (369)
T ss_dssp -CCBCEEEEEECCCCHHHHHTTCCBCEEECSSSEEEEECTTSCEEEEECSEEECTTCCHHHHHHT-TTHHHHHHHTTCEE
T ss_pred CCCCeEEEEECCCCChhhccCCCcEEEEcCCcEEEEecCCCCCceEEecCEEECCCCCcceehhh-hhhhhHhhhcCCce
Confidence 47899999999999999988777655554444 3332 223345789999999999999999998 69999999999999
Q ss_pred eEEEecccCCCCccccccCC-----------------------ccceeeEEEEEEecceeeeccCCCC---CCceeeeCC
Q 002982 143 TIFAYGVTSSGKTHTMHTPN-----------------------REFLLRVSYLEIYNEVVNDLLNPAG---QNLRIREDS 196 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~g~~-----------------------~~f~V~vSylEIYnE~I~DLL~p~~---~~L~Ired~ 196 (861)
||||||||||||||||+|+. ..|.|+|||+|||||.|+|||+|.. ..+.|++|+
T Consensus 82 tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l~i~e~~ 161 (369)
T 3cob_A 82 CIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDS 161 (369)
T ss_dssp EEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSSCCCCCEEEECT
T ss_pred EEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCcccCCcceEEEECC
Confidence 99999999999999998652 3589999999999999999998753 579999998
Q ss_pred C-CeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeeeeeeeeecCCC
Q 002982 197 Q-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGS 275 (861)
Q Consensus 197 ~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~SkL~LVDLAGS 275 (861)
. |++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++.... ......|+|+|||||||
T Consensus 162 ~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~----~~~~~~skL~lVDLAGS 237 (369)
T 3cob_A 162 KGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQ----TQAIARGKLSFVDLAGS 237 (369)
T ss_dssp TSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETT----TCCEEEEEEEEEECCCS
T ss_pred CCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCC----CCcEEEEEEEEEeCCCC
Confidence 6 589999999999999999999999999999999999999999999999999976532 23467899999999999
Q ss_pred CC-ccccccchhhhhhhhcccchHHHHHHHHHHhcCCCCcccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHHH
Q 002982 276 ES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETHN 354 (861)
Q Consensus 276 Er-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISPs~~~~eETLs 354 (861)
|| .++++.|.|++|+.+||+||++||+||.+|++++ .|||||||||||||||+|||||+|+|||||||+..+++||++
T Consensus 238 Er~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETl~ 316 (369)
T 3cob_A 238 ERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGN-QHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHN 316 (369)
T ss_dssp SCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTC-SCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHH
T ss_pred CcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCC-CcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHHHHHH
Confidence 99 5788999999999999999999999999999864 799999999999999999999999999999999999999999
Q ss_pred HHHHHHHcccccccccccccc
Q 002982 355 TLKFAHRAKHIEILAAQNKLE 375 (861)
Q Consensus 355 TLrFAsRAk~Ikn~~~~N~l~ 375 (861)
||+||+|||+|+|.|.+|...
T Consensus 317 TLrfA~rak~i~~~~~~n~~~ 337 (369)
T 3cob_A 317 SLTYASRVRSIVNDPSKNVSS 337 (369)
T ss_dssp HHHHHHHHHTCBCCCCCCEEC
T ss_pred HHHHHHHHhhcccCCcccCCH
Confidence 999999999999999999754
No 7
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=3.7e-82 Score=694.87 Aligned_cols=305 Identities=40% Similarity=0.617 Sum_probs=248.5
Q ss_pred CCCeEEEEecCCCChhhhccCCeEEE--ecCCCEEEeCCC----------CCceeEeeceecCCCCcchhHHHHHHHHHH
Q 002982 66 KENVTVTVRFRPLSPREIRQGEEIAW--YADGETILRNED----------NPSIAYAYDRVFGPTTTTRHVYDIAAQHVV 133 (861)
Q Consensus 66 ~~~VkV~VRVRPl~~~E~~~g~~~~~--~~d~~~iv~~~~----------~~~~~F~FD~VF~~~atQeeVY~~~~~plV 133 (861)
.++|+|+|||||++++|...+...++ ..+...+.+.++ ...+.|.||+||+++++|++||+.++.|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv 82 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLI 82 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHHH
Confidence 57899999999999999877764333 334445544332 235789999999999999999999999999
Q ss_pred HHhhcCCCeeEEEecccCCCCccccccC-----------------------CccceeeEEEEEEecceeeeccCCCCCCc
Q 002982 134 SGAMDGINGTIFAYGVTSSGKTHTMHTP-----------------------NREFLLRVSYLEIYNEVVNDLLNPAGQNL 190 (861)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM~g~-----------------------~~~f~V~vSylEIYnE~I~DLL~p~~~~L 190 (861)
+++|+|||+||||||||||||||||+|+ +..|.|+|||+|||||+|+|||++ ...+
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~-~~~l 161 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKN-NTKL 161 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTT-EEEE
T ss_pred HHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEcccC-CcCc
Confidence 9999999999999999999999999864 235899999999999999999985 4579
Q ss_pred eeeeCCC-CeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeeeeeee
Q 002982 191 RIREDSQ-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHL 269 (861)
Q Consensus 191 ~Ired~~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~SkL~L 269 (861)
.|++|+. |+||.||+++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++..... .......|+|+|
T Consensus 162 ~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~~~~~skl~l 239 (350)
T 2vvg_A 162 PLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIE--NKEVIRVGKLNL 239 (350)
T ss_dssp CEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC------CEEEEEEEEE
T ss_pred eeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccC--CCccEEEEEEEE
Confidence 9999985 6999999999999999999999999999999999999999999999999998765432 234567899999
Q ss_pred eecCCCCC-ccccccchhhhhhhhcccchHHHHHHHHHHhcCCCCcccCCCCchhhhhhccCCCCccceeEEeeCCCCCC
Q 002982 270 IDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSS 348 (861)
Q Consensus 270 VDLAGSEr-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISPs~~~ 348 (861)
|||||||| .++++.|.|++|+.+||+||++||+||.+|++++ .|||||||||||||||+||||++|+|||||||+..+
T Consensus 240 VDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~ 318 (350)
T 2vvg_A 240 VDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGA-THIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTN 318 (350)
T ss_dssp EECCCCCC---------------CTTHHHHHHHHHHHHHHHTC-SSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGG
T ss_pred EeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCC-CCCCccccHHHHHHHHhcCCCccEEEEEEeCCcccc
Confidence 99999999 6788999999999999999999999999999975 899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccccccccccccc
Q 002982 349 SEETHNTLKFAHRAKHIEILAAQNKL 374 (861)
Q Consensus 349 ~eETLsTLrFAsRAk~Ikn~~~~N~l 374 (861)
++||++||+||+|||+|+|.|.+|+-
T Consensus 319 ~~ETl~TL~fA~rak~i~n~~~~n~~ 344 (350)
T 2vvg_A 319 YDETMSTLRYADRAKQIKNKPRINED 344 (350)
T ss_dssp HHHHHHHHHHHHHHTTCBCCCCCCBS
T ss_pred HHHHHHHHHHHHHHhhccccceecCC
Confidence 99999999999999999999999963
No 8
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.4e-82 Score=703.56 Aligned_cols=311 Identities=33% Similarity=0.491 Sum_probs=233.9
Q ss_pred CCCCCCeEEEEecCCCChhhhccCCeE-EEecCCCEEEeCC---CCCceeEeeceecCCCCcchhHHHHHHHHHHHHhhc
Q 002982 63 PSSKENVTVTVRFRPLSPREIRQGEEI-AWYADGETILRNE---DNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMD 138 (861)
Q Consensus 63 ~~~~~~VkV~VRVRPl~~~E~~~g~~~-~~~~d~~~iv~~~---~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~ 138 (861)
....++|+|+|||||+++.|...+... +...++..+.+.. ......|.||+||+++++|++||+.++.|+|+++|+
T Consensus 17 ~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~ 96 (388)
T 3bfn_A 17 QGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLE 96 (388)
T ss_dssp SSCCCCCEEEEEECCCC-----------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGHHHHTT
T ss_pred cCCCCCEEEEEECCCCChhhhccCCCceEEecCCCeEEEecCCCCCCeeEEEcceEecCCCCHhHHHHHHHHHHHHHhhc
Confidence 345789999999999999997665433 3334444443322 124568999999999999999999999999999999
Q ss_pred CCCeeEEEecccCCCCccccccCC--------------------------ccceeeEEEEEEecceeeeccCCCCCCcee
Q 002982 139 GINGTIFAYGVTSSGKTHTMHTPN--------------------------REFLLRVSYLEIYNEVVNDLLNPAGQNLRI 192 (861)
Q Consensus 139 GyN~tIfAYGqTGSGKTyTM~g~~--------------------------~~f~V~vSylEIYnE~I~DLL~p~~~~L~I 192 (861)
|||+||||||||||||||||+|+. ..|.|+|||+|||||+|+|||++....+.|
T Consensus 97 G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~l~i 176 (388)
T 3bfn_A 97 GQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVI 176 (388)
T ss_dssp TCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCSSCBCCC
T ss_pred CceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhccCCCCceE
Confidence 999999999999999999998632 358899999999999999999998889999
Q ss_pred eeCCC-CeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeeeeeeeee
Q 002982 193 REDSQ-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLID 271 (861)
Q Consensus 193 red~~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~SkL~LVD 271 (861)
++|+. |+||.||+++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++..... ......|+|+|||
T Consensus 177 red~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~---~~~~~~skL~lVD 253 (388)
T 3bfn_A 177 REDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLA---PFRQREGKLYLID 253 (388)
T ss_dssp EECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESST---TCCEEEEEEEEEE
T ss_pred EEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCC---CCceeEEEEEEEE
Confidence 99986 5999999999999999999999999999999999999999999999999998764322 2235789999999
Q ss_pred cCCCCC-ccccccchhhhhhhhcccchHHHHHHHHHHhcCCCCcccCCCCchhhhhhccCCCCccceeEEeeCCCCCChH
Q 002982 272 LAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSE 350 (861)
Q Consensus 272 LAGSEr-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISPs~~~~e 350 (861)
|||||| .++++.|.|++|+.+||+||++||+||.+|++++ .|||||||||||||||+||||++|+|||||||+..+++
T Consensus 254 LAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~-~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~~~~~~ 332 (388)
T 3bfn_A 254 LAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGL-PRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYL 332 (388)
T ss_dssp CCCTTC--------------CCCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCSGGGHH
T ss_pred CCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCC-CCCcCcccHHHHHHHHhhCCCccEEEEEEECCccccHH
Confidence 999999 5788999999999999999999999999999875 69999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccccccccccccccch
Q 002982 351 ETHNTLKFAHRAKHIEILAAQNKLEDG 377 (861)
Q Consensus 351 ETLsTLrFAsRAk~Ikn~~~~N~l~~~ 377 (861)
||++||+||+|||+|+|.|.+|+..+.
T Consensus 333 ETlsTLrfA~rak~I~n~p~~n~~~~~ 359 (388)
T 3bfn_A 333 DTVSALNFAARSKEVINRPFTNESLQP 359 (388)
T ss_dssp HHHHHHHHHCSEEEEC-----------
T ss_pred HHHHHHHHHHHHhhCcCcCcccCCCCH
Confidence 999999999999999999999975444
No 9
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.7e-82 Score=695.84 Aligned_cols=307 Identities=48% Similarity=0.730 Sum_probs=266.9
Q ss_pred CCCeEEEEecCCCChhhhccCCe--EEEecCCCEEEeCCCCCceeEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCee
Q 002982 66 KENVTVTVRFRPLSPREIRQGEE--IAWYADGETILRNEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGT 143 (861)
Q Consensus 66 ~~~VkV~VRVRPl~~~E~~~g~~--~~~~~d~~~iv~~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~t 143 (861)
.++|+|+|||||++.+|...+.. +.|..++..+.... ..+.|.||+||+++++|++||+.++.|+|+.+|+|||+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~--~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~t 80 (349)
T 1t5c_A 3 EGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVD--GSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGT 80 (349)
T ss_dssp CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEETT--SSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHTTCCEE
T ss_pred CCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEECC--CCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHcCCccc
Confidence 68999999999999999866553 44555566665443 346899999999999999999999999999999999999
Q ss_pred EEEecccCCCCccccccC----------------------CccceeeEEEEEEecceeeeccCCCC--CCceeeeCCC-C
Q 002982 144 IFAYGVTSSGKTHTMHTP----------------------NREFLLRVSYLEIYNEVVNDLLNPAG--QNLRIREDSQ-G 198 (861)
Q Consensus 144 IfAYGqTGSGKTyTM~g~----------------------~~~f~V~vSylEIYnE~I~DLL~p~~--~~L~Ired~~-G 198 (861)
|||||||||||||||+|+ +..|.|+|||+|||||+|+|||++.. .+|.|++|+. |
T Consensus 81 ifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~ed~~~~ 160 (349)
T 1t5c_A 81 IFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRN 160 (349)
T ss_dssp EEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGCTTEEEEEEEEEEEEETTEEEESSSSSCTTCCEEEEETTTTE
T ss_pred eeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhCcCCcEEEEEEEEEEeCCEEEEccCCCCCCCCceEEECCCCC
Confidence 999999999999999864 23689999999999999999998754 5799999986 5
Q ss_pred eEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCC-CCceeeeeeeeeeecCCCCC
Q 002982 199 TFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENS-AGEAVNLSQLHLIDLAGSES 277 (861)
Q Consensus 199 ~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~-~~~~~~~SkL~LVDLAGSEr 277 (861)
+||.||+++.|.+++|++.+|..|.++|++++|.||..|||||+||+|.|++....... .......|+|+|||||||||
T Consensus 161 ~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~lVDLAGSEr 240 (349)
T 1t5c_A 161 VYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSER 240 (349)
T ss_dssp EEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEEEEEEECCCGGG
T ss_pred EEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEEEECCCCcc
Confidence 99999999999999999999999999999999999999999999999999987543321 22346789999999999999
Q ss_pred -ccccccchhhhhhhhcccchHHHHHHHHHHhcCC-CCcccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHHHH
Q 002982 278 -SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGR-ATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETHNT 355 (861)
Q Consensus 278 -~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~k-~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISPs~~~~eETLsT 355 (861)
.++++.|.|++|+.+||+||++||+||.+|++++ ..|||||||||||||||+||||++|+|||||||+ +++||++|
T Consensus 241 ~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~--~~~ETlsT 318 (349)
T 1t5c_A 241 AAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SFDETLTA 318 (349)
T ss_dssp TC-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT--CSHHHHHH
T ss_pred ccccCCccccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC--CHHHHHHH
Confidence 5688999999999999999999999999999875 3699999999999999999999999999999997 59999999
Q ss_pred HHHHHHccccccccccccccc
Q 002982 356 LKFAHRAKHIEILAAQNKLED 376 (861)
Q Consensus 356 LrFAsRAk~Ikn~~~~N~l~~ 376 (861)
|+||+|||+|+|.|.+|+..+
T Consensus 319 L~fA~rak~I~n~~~vn~~~~ 339 (349)
T 1t5c_A 319 LQFASTAKYMKNTPYVNEVST 339 (349)
T ss_dssp HHHHHHHTTCCCCCCCCEEC-
T ss_pred HHHHHHHhhcccCceeccCCC
Confidence 999999999999999997543
No 10
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=2.3e-82 Score=698.83 Aligned_cols=308 Identities=38% Similarity=0.592 Sum_probs=255.5
Q ss_pred CCCCCeEEEEecCCCChhhhccCCeEEE--ecCCCEEEeC-----CCCCceeEeeceecCCCCcchhHHHHHHHHHHHHh
Q 002982 64 SSKENVTVTVRFRPLSPREIRQGEEIAW--YADGETILRN-----EDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGA 136 (861)
Q Consensus 64 ~~~~~VkV~VRVRPl~~~E~~~g~~~~~--~~d~~~iv~~-----~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~v 136 (861)
...++|+|+|||||++..|...+...++ .++...+... .....+.|.||+||+++++|++||+.++.|+|+++
T Consensus 5 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~ 84 (359)
T 1x88_A 5 EKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEV 84 (359)
T ss_dssp ----CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHHH
Confidence 4478999999999999999877654333 3333343322 11234689999999999999999999999999999
Q ss_pred hcCCCeeEEEecccCCCCccccccCC--------------------------------ccceeeEEEEEEecceeeeccC
Q 002982 137 MDGINGTIFAYGVTSSGKTHTMHTPN--------------------------------REFLLRVSYLEIYNEVVNDLLN 184 (861)
Q Consensus 137 l~GyN~tIfAYGqTGSGKTyTM~g~~--------------------------------~~f~V~vSylEIYnE~I~DLL~ 184 (861)
|+|||+||||||||||||||||+|+. ..|.|+|||+|||||+|+|||+
T Consensus 85 l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~v~vS~~EIYnE~i~DLL~ 164 (359)
T 1x88_A 85 IMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLN 164 (359)
T ss_dssp HTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSSSSEEEEEEEEEEEEETTEEEETTC
T ss_pred hCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhccCceEEEEEEEEEEeCceeeehhc
Confidence 99999999999999999999999742 2488999999999999999998
Q ss_pred CCC---CCceeeeCC---CCeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCC
Q 002982 185 PAG---QNLRIREDS---QGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSA 258 (861)
Q Consensus 185 p~~---~~L~Ired~---~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~ 258 (861)
+.. ..+.+++++ .|+||.||+++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|.+.....+ .
T Consensus 165 ~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~-~ 243 (359)
T 1x88_A 165 PSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID-G 243 (359)
T ss_dssp TTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECTT-S
T ss_pred ccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecccCC-C
Confidence 764 468999997 479999999999999999999999999999999999999999999999999987543221 2
Q ss_pred CceeeeeeeeeeecCCCCC-ccccccchhhhhhhhcccchHHHHHHHHHHhcCCCCcccCCCCchhhhhhccCCCCccce
Q 002982 259 GEAVNLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVS 337 (861)
Q Consensus 259 ~~~~~~SkL~LVDLAGSEr-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNskT~ 337 (861)
......|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|+++ ..|||||||||||||||+||||++|+
T Consensus 244 ~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~-~~hvPyRdSkLT~lLqdsLgGnskt~ 322 (359)
T 1x88_A 244 EELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER-TPHVPYRESKLTRILQDSLGGRTRTS 322 (359)
T ss_dssp CEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHTGGGSSSSSEEE
T ss_pred CceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcC-CCCCccccchHHHHHHHHhCCCCeEE
Confidence 2346789999999999999 678899999999999999999999999999985 58999999999999999999999999
Q ss_pred eEEeeCCCCCChHHHHHHHHHHHHcccccccccccc
Q 002982 338 LICTVTPSSSSSEETHNTLKFAHRAKHIEILAAQNK 373 (861)
Q Consensus 338 mIa~ISPs~~~~eETLsTLrFAsRAk~Ikn~~~~N~ 373 (861)
|||||||+..+++||++||+||+|||+|+|.|.+|+
T Consensus 323 mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~ 358 (359)
T 1x88_A 323 IIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358 (359)
T ss_dssp EEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred EEEEECCCcccHHHHHHHHHHHHHHhhccCcceeCC
Confidence 999999999999999999999999999999999995
No 11
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1e-81 Score=692.88 Aligned_cols=300 Identities=38% Similarity=0.594 Sum_probs=238.7
Q ss_pred CCCCCeEEEEecCCCChhhhccCCeE-EEecCCCEEEeCCC---------------------CCceeEeeceecCCCCcc
Q 002982 64 SSKENVTVTVRFRPLSPREIRQGEEI-AWYADGETILRNED---------------------NPSIAYAYDRVFGPTTTT 121 (861)
Q Consensus 64 ~~~~~VkV~VRVRPl~~~E~~~g~~~-~~~~d~~~iv~~~~---------------------~~~~~F~FD~VF~~~atQ 121 (861)
+.+++|+|+|||||++.+|...+... +...++.+++.++. .....|.||+||+++++|
T Consensus 7 d~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q 86 (355)
T 3lre_A 7 DLCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETSTQ 86 (355)
T ss_dssp -----CEEEEEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEECTTCCH
T ss_pred hccCCCEEEEEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCCCCh
Confidence 45789999999999999999887653 34445555544332 123579999999999999
Q ss_pred hhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccccCC-----------------------ccceeeEEEEEEecce
Q 002982 122 RHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMHTPN-----------------------REFLLRVSYLEIYNEV 178 (861)
Q Consensus 122 eeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~g~~-----------------------~~f~V~vSylEIYnE~ 178 (861)
++||+.++.|+|+++|+|||+||||||||||||||||+|.. ..|.|+|||+|||||+
T Consensus 87 ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS~~EIYnE~ 166 (355)
T 3lre_A 87 SEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQ 166 (355)
T ss_dssp HHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEETTE
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhhccCceEEEEEEEEEEECCE
Confidence 99999999999999999999999999999999999998643 3488999999999999
Q ss_pred eeeccCCCCCCceeeeCCC-CeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCC
Q 002982 179 VNDLLNPAGQNLRIREDSQ-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENS 257 (861)
Q Consensus 179 I~DLL~p~~~~L~Ired~~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~ 257 (861)
|+|||++. .++.|++|+. |++|.||+++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++......
T Consensus 167 i~DLL~~~-~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~- 244 (355)
T 3lre_A 167 IRDLLVNS-GPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTAS- 244 (355)
T ss_dssp EEESSSCC-CCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEEEEETTSC-
T ss_pred EEECcCCC-CCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEEEecCCCC-
Confidence 99999875 4799999985 69999999999999999999999999999999999999999999999999998754322
Q ss_pred CCceeeeeeeeeeecCCCCC-ccccccchhhhhhhhcccchHHHHHHHHHHhcCC--CCcccCCCCchhhhhhccCCCCc
Q 002982 258 AGEAVNLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGR--ATHIPYRDSKLTRLLQSSLSGHG 334 (861)
Q Consensus 258 ~~~~~~~SkL~LVDLAGSEr-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~k--~~hIPYRDSKLTrLLqdSLGGNs 334 (861)
....+..|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|++++ ..|||||||||||||||+|||||
T Consensus 245 ~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lL~dsLgGns 324 (355)
T 3lre_A 245 INQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNC 324 (355)
T ss_dssp TTCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC--------CCGGGSHHHHHTTTTSSTTS
T ss_pred CCCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHHHHHHHhcCCCc
Confidence 23446789999999999999 6788999999999999999999999999999853 46999999999999999999999
Q ss_pred cceeEEeeCCCCCChHHHHHHHHHHHHcccc
Q 002982 335 RVSLICTVTPSSSSSEETHNTLKFAHRAKHI 365 (861)
Q Consensus 335 kT~mIa~ISPs~~~~eETLsTLrFAsRAk~I 365 (861)
+|+|||||||+..+++||++||+||+|||+|
T Consensus 325 kt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 325 QTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp EEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred eEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999987
No 12
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=1.2e-81 Score=685.02 Aligned_cols=292 Identities=44% Similarity=0.690 Sum_probs=267.6
Q ss_pred CCCCeEEEEecCCCChhhhccCCeEE-EecCCCEEEeCCCCCceeEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCee
Q 002982 65 SKENVTVTVRFRPLSPREIRQGEEIA-WYADGETILRNEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGT 143 (861)
Q Consensus 65 ~~~~VkV~VRVRPl~~~E~~~g~~~~-~~~d~~~iv~~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~t 143 (861)
.+++|+|+|||||+++.|...+...+ ...+..++... .+.|.||+||+++++|++||+.++.|+|+++|+|||+|
T Consensus 5 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~----~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n~t 80 (325)
T 1bg2_A 5 AECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIA----SKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGT 80 (325)
T ss_dssp SSCEEEEEEEECCCCHHHHHHTCCBCCEEETTTEEEET----TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEE
T ss_pred CCCCEEEEEEcCCCChhHhccCCeeEEEECCCCeEEEC----CEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCCCeEE
Confidence 46899999999999999988776533 34455555553 36899999999999999999999999999999999999
Q ss_pred EEEecccCCCCccccccC--------------------------CccceeeEEEEEEecceeeeccCCCCCCceeeeCCC
Q 002982 144 IFAYGVTSSGKTHTMHTP--------------------------NREFLLRVSYLEIYNEVVNDLLNPAGQNLRIREDSQ 197 (861)
Q Consensus 144 IfAYGqTGSGKTyTM~g~--------------------------~~~f~V~vSylEIYnE~I~DLL~p~~~~L~Ired~~ 197 (861)
|||||||||||||||+|+ +.+|.|+|||+|||||+|+|||++...++.+++++.
T Consensus 81 ifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~l~i~e~~~ 160 (325)
T 1bg2_A 81 IFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKN 160 (325)
T ss_dssp EEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTTCCSBCEEECTT
T ss_pred EEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCCCCCceEEECCC
Confidence 999999999999999874 235899999999999999999999888999999986
Q ss_pred -CeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeeeeeeeeecCCCC
Q 002982 198 -GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGSE 276 (861)
Q Consensus 198 -G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~SkL~LVDLAGSE 276 (861)
|+||.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++.... ......|+|+||||||||
T Consensus 161 ~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~----~~~~~~skl~lVDLAGSE 236 (325)
T 1bg2_A 161 RVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQ----TEQKLSGKLYLVDLAGSE 236 (325)
T ss_dssp SCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETT----TCCEEEEEEEEEECCCSC
T ss_pred CCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecC----CCcEEEEEEEEEECCCCC
Confidence 589999999999999999999999999999999999999999999999999876432 234678999999999999
Q ss_pred C-ccccccchhhhhhhhcccchHHHHHHHHHHhcCCCCcccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHHHH
Q 002982 277 S-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETHNT 355 (861)
Q Consensus 277 r-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISPs~~~~eETLsT 355 (861)
| .++++.|.|++|+.+||+||++||+||.+|+++ ..|||||||||||||||+|||||+|+|||||||+..+++||++|
T Consensus 237 r~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~-~~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~~~ETl~T 315 (325)
T 1bg2_A 237 KVSKTGAEGAVLDEAKNINKSLSALGNVISALAEG-STYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKST 315 (325)
T ss_dssp CCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHHHHHHH
T ss_pred cccccCCccccchHHHHHHHHHHHHHHHHHHHHcC-CCCCcccccHHHHHHHHHhCCCCcEEEEEEECCccccHHHHHHH
Confidence 9 678899999999999999999999999999986 57999999999999999999999999999999999999999999
Q ss_pred HHHHHHcccc
Q 002982 356 LKFAHRAKHI 365 (861)
Q Consensus 356 LrFAsRAk~I 365 (861)
|+||+|||+|
T Consensus 316 L~fa~rak~I 325 (325)
T 1bg2_A 316 LLFGQRAKTI 325 (325)
T ss_dssp HHHHHTSCCC
T ss_pred HHHHHHhccC
Confidence 9999999987
No 13
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=2e-81 Score=694.30 Aligned_cols=308 Identities=40% Similarity=0.643 Sum_probs=257.2
Q ss_pred CCCCCeEEEEecCCCChhhhccCCe-EEEecCCCEEEeCC---CCCceeEeeceecCCCCcchhHHHHHHHHHHHHhhcC
Q 002982 64 SSKENVTVTVRFRPLSPREIRQGEE-IAWYADGETILRNE---DNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDG 139 (861)
Q Consensus 64 ~~~~~VkV~VRVRPl~~~E~~~g~~-~~~~~d~~~iv~~~---~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~G 139 (861)
...++|+|+|||||++..|...+.. ++...++..++... ....+.|.||+||+++++|++||+.++.|+|+++|+|
T Consensus 20 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G 99 (373)
T 2wbe_C 20 KSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVLNG 99 (373)
T ss_dssp CCCEECEEEEEECCCCHHHHHHTCCBCEEEETTTEEEESSSSSSTTCEEEECSEEECTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCeEEEEEcCCCChhhhccCCCceEEEcCCCeEEEecCCCCCCceEEeccEEeccccchhHHHHHHHHHHHHHHhCC
Confidence 4468999999999999999765543 33344555554432 2345789999999999999999999999999999999
Q ss_pred CCeeEEEecccCCCCccccccCC--------------------------------ccceeeEEEEEEecceeeeccCCCC
Q 002982 140 INGTIFAYGVTSSGKTHTMHTPN--------------------------------REFLLRVSYLEIYNEVVNDLLNPAG 187 (861)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM~g~~--------------------------------~~f~V~vSylEIYnE~I~DLL~p~~ 187 (861)
||+||||||||||||||||+|+. .+|.|+|||+|||||+|+|||++..
T Consensus 100 ~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 179 (373)
T 2wbe_C 100 YNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMMEVEYTMRISYLELYNEELCDLLSTDD 179 (373)
T ss_dssp CCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEETTEEEESSCTTS
T ss_pred ceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhcCceEEEEEEEEEEeCCeEEECCCCCC
Confidence 99999999999999999999753 2589999999999999999998764
Q ss_pred -CCceeeeCC---CCeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceee
Q 002982 188 -QNLRIREDS---QGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVN 263 (861)
Q Consensus 188 -~~L~Ired~---~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~ 263 (861)
..+.+++++ .|+||.||+++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++...+.. ......
T Consensus 180 ~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~-~~~~~~ 258 (373)
T 2wbe_C 180 TTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIE-GEDMLK 258 (373)
T ss_dssp CSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCTT-TCCEEE
T ss_pred CCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCCC-CCccee
Confidence 468888875 359999999999999999999999999999999999999999999999999987643222 234567
Q ss_pred eeeeeeeecCCCCC-cccccc-chhhhhhhhcccchHHHHHHHHHHhcCCCCcccCCCCchhhhhhccCCCCccceeEEe
Q 002982 264 LSQLHLIDLAGSES-SKAETT-GVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICT 341 (861)
Q Consensus 264 ~SkL~LVDLAGSEr-~kt~~~-G~rlkEg~~INkSL~aLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ 341 (861)
.|+|+||||||||| .++++. |.|++|+.+||+||++||+||.+|+++ ..|||||||||||||||+||||++|+||||
T Consensus 259 ~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~-~~hvPyRdSkLT~lLqdsLgGnskt~mIa~ 337 (373)
T 2wbe_C 259 IGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDR-APHVPYRESKLTRLLQESLGGRTKTSIIAT 337 (373)
T ss_dssp EEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHC-SSCCCGGGCHHHHHTHHHHHSSSEEEEEEE
T ss_pred EEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcC-CCcCccccchHHHHHHHHhCCCceEEEEEE
Confidence 89999999999999 567766 999999999999999999999999985 489999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHHHcccccccccccc
Q 002982 342 VTPSSSSSEETHNTLKFAHRAKHIEILAAQNK 373 (861)
Q Consensus 342 ISPs~~~~eETLsTLrFAsRAk~Ikn~~~~N~ 373 (861)
|||+..+++||++||+||+|||+|+|.|.+|+
T Consensus 338 isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~ 369 (373)
T 2wbe_C 338 ISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQ 369 (373)
T ss_dssp ECCBGGGHHHHHHHHHHHHHHHTCEECCCCCE
T ss_pred eCCCcccHHHHHHHHHHHHHHhhccccceecc
Confidence 99999999999999999999999999999996
No 14
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=7.5e-81 Score=685.74 Aligned_cols=299 Identities=41% Similarity=0.632 Sum_probs=243.2
Q ss_pred CCeEEEEecCCCChhhhccCCeEEEecCCCEEEeCCC----------CCceeEeeceecC--------CCCcchhHHHHH
Q 002982 67 ENVTVTVRFRPLSPREIRQGEEIAWYADGETILRNED----------NPSIAYAYDRVFG--------PTTTTRHVYDIA 128 (861)
Q Consensus 67 ~~VkV~VRVRPl~~~E~~~g~~~~~~~d~~~iv~~~~----------~~~~~F~FD~VF~--------~~atQeeVY~~~ 128 (861)
.+|+|+|||||++.+|...+..+++..++..++..+. ...+.|.||+||+ +.++|++||+.+
T Consensus 1 S~VkV~vRvRPl~~~E~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~ 80 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCL 80 (354)
T ss_dssp -CEEEEEEECCCCHHHHHHTCCBCEEEETTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHHH
T ss_pred CCcEEEEECCCCChhhhccCCceEEEeCCCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHHh
Confidence 3699999999999999988777666666665554432 2356899999994 567899999999
Q ss_pred HHHHHHHhhcCCCeeEEEecccCCCCccccccCC------------------------ccceeeEEEEEEecceeeeccC
Q 002982 129 AQHVVSGAMDGINGTIFAYGVTSSGKTHTMHTPN------------------------REFLLRVSYLEIYNEVVNDLLN 184 (861)
Q Consensus 129 ~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~g~~------------------------~~f~V~vSylEIYnE~I~DLL~ 184 (861)
+.|+|+.+|+|||+||||||||||||||||+|.. ..|.|+|||+|||||+|+|||+
T Consensus 81 ~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~ 160 (354)
T 3gbj_A 81 GENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLD 160 (354)
T ss_dssp HHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEETTC
T ss_pred hHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeEccC
Confidence 9999999999999999999999999999998642 3489999999999999999999
Q ss_pred CCC--CCceeeeCCC-CeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCce
Q 002982 185 PAG--QNLRIREDSQ-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEA 261 (861)
Q Consensus 185 p~~--~~L~Ired~~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~ 261 (861)
|.. ..+.|++++. |+||.||+++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++...+.......
T Consensus 161 ~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~ 240 (354)
T 3gbj_A 161 PKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSG 240 (354)
T ss_dssp ------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECTTSCEEE
T ss_pred CCCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecccCCCCCC
Confidence 763 5799999985 7999999999999999999999999999999999999999999999999998865444444455
Q ss_pred eeeeeeeeeecCCCCC-ccccccchhhhhhhhcccchHHHHHHHHHHhc-----CCCCcccCCCCchhhhhhccCCCCcc
Q 002982 262 VNLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTD-----GRATHIPYRDSKLTRLLQSSLSGHGR 335 (861)
Q Consensus 262 ~~~SkL~LVDLAGSEr-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~-----~k~~hIPYRDSKLTrLLqdSLGGNsk 335 (861)
...|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|++ ++..|||||||||||||||+|||||+
T Consensus 241 ~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGnsk 320 (354)
T 3gbj_A 241 EKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSK 320 (354)
T ss_dssp EEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHSTTCE
T ss_pred eeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHHhCCCCe
Confidence 6789999999999999 67889999999999999999999999999986 34679999999999999999999999
Q ss_pred ceeEEeeCCCCCChHHHHHHHHHHHHcccc
Q 002982 336 VSLICTVTPSSSSSEETHNTLKFAHRAKHI 365 (861)
Q Consensus 336 T~mIa~ISPs~~~~eETLsTLrFAsRAk~I 365 (861)
|+|||||||+..+++|||+||+||.||++-
T Consensus 321 t~mIa~vsP~~~~~~ETlsTLr~a~~~~~~ 350 (354)
T 3gbj_A 321 TAMVATVSPAADNYDETLSTLRYADRAKHH 350 (354)
T ss_dssp EEEEEEECCBGGGHHHHHHHHHHHHHHC--
T ss_pred EEEEEEeCCCcchHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999964
No 15
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=4.3e-80 Score=677.49 Aligned_cols=296 Identities=41% Similarity=0.620 Sum_probs=242.1
Q ss_pred CCCCeEEEEecCCCChhhhccCCeEEE--ecCCCEEEeCCCCCceeEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCe
Q 002982 65 SKENVTVTVRFRPLSPREIRQGEEIAW--YADGETILRNEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGING 142 (861)
Q Consensus 65 ~~~~VkV~VRVRPl~~~E~~~g~~~~~--~~d~~~iv~~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~ 142 (861)
..++|+|+|||||++++|...+...++ .++...+... ..+.|.||+||+++++|++||+.++.|+|+++|+|||+
T Consensus 9 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~---~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~G~n~ 85 (344)
T 4a14_A 9 EEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLG---RDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNA 85 (344)
T ss_dssp CCCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEET---TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCE
T ss_pred cccceEEEEEecccchHHHhccCeeEEEEcCCCceEEec---ccceEEEEEEEecCcchhHHHHHHHHHHHHHHHhhcCe
Confidence 468899999999999999877654332 3333344432 35789999999999999999999999999999999999
Q ss_pred eEEEecccCCCCccccccC----------------------------CccceeeEEEEEEecceeeeccCCC--CCCcee
Q 002982 143 TIFAYGVTSSGKTHTMHTP----------------------------NREFLLRVSYLEIYNEVVNDLLNPA--GQNLRI 192 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~g~----------------------------~~~f~V~vSylEIYnE~I~DLL~p~--~~~L~I 192 (861)
||||||||||||||||+|. ..+|.|+|||+|||||+|+|||++. ...+.|
T Consensus 86 tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i 165 (344)
T 4a14_A 86 TVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQL 165 (344)
T ss_dssp EEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHCTTSEEEEEEEEEEEETTEEEETTSSCCCGGGCEE
T ss_pred eEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccccceeeEEEEehhhhhHHHHHHHHHhcccccccee
Confidence 9999999999999999864 2358899999999999999999864 357999
Q ss_pred eeCCC-CeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCC----CCCceeeeeee
Q 002982 193 REDSQ-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGEN----SAGEAVNLSQL 267 (861)
Q Consensus 193 red~~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~----~~~~~~~~SkL 267 (861)
++|+. |+||.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++...... ........|+|
T Consensus 166 ~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~skl 245 (344)
T 4a14_A 166 REDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSKF 245 (344)
T ss_dssp EECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC------------CEEEEEE
T ss_pred eeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCccccceeeeee
Confidence 99996 59999999999999999999999999999999999999999999999999998643221 12345678999
Q ss_pred eeeecCCCCC-ccccccchhhhhhhhcccchHHHHHHHHHHhcC--CCCcccCCCCchhhhhhccCCCCccceeEEeeCC
Q 002982 268 HLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDG--RATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTP 344 (861)
Q Consensus 268 ~LVDLAGSEr-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~--k~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISP 344 (861)
+||||||||| .++++.|.|++|+.+||+||++||+||.+|+++ +..|||||||||||||||+||||++|+|||||||
T Consensus 246 ~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~vsP 325 (344)
T 4a14_A 246 HFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSP 325 (344)
T ss_dssp EEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTTSEEEEEEEECC
T ss_pred eEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCCcceEEEEEeCC
Confidence 9999999999 578899999999999999999999999999975 3479999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcc
Q 002982 345 SSSSSEETHNTLKFAHRAK 363 (861)
Q Consensus 345 s~~~~eETLsTLrFAsRAk 363 (861)
+..+++||++||+||+|||
T Consensus 326 ~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 326 SSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp BGGGHHHHHHHHHHHHHTC
T ss_pred CccchhHHhhhhhhhhhcC
Confidence 9999999999999999997
No 16
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-80 Score=683.27 Aligned_cols=296 Identities=37% Similarity=0.528 Sum_probs=240.3
Q ss_pred CCCCCeEEEEecCCCChhhhccCCeEEEecCCCEEEeCC-----------CCCceeEeeceecCCCCcchhHHHHHHHHH
Q 002982 64 SSKENVTVTVRFRPLSPREIRQGEEIAWYADGETILRNE-----------DNPSIAYAYDRVFGPTTTTRHVYDIAAQHV 132 (861)
Q Consensus 64 ~~~~~VkV~VRVRPl~~~E~~~g~~~~~~~d~~~iv~~~-----------~~~~~~F~FD~VF~~~atQeeVY~~~~~pl 132 (861)
..+++|+|+|||||++..|.. .+.+..++..+.... ....+.|.||+||+ +++|++||+.+++|+
T Consensus 21 ~~~~~i~V~vRvRP~~~~e~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~pl 96 (359)
T 3nwn_A 21 GTRKKVHAFVRVKPTDDFAHE---MIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDV 96 (359)
T ss_dssp ---CCEEEEEEECCCSSCCTT---TEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHHH
T ss_pred CCCCCEEEEEEcCCCCccccc---ceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHHHH
Confidence 347899999999999876632 233444454444322 22346899999997 589999999999999
Q ss_pred HHHhhcCCCeeEEEecccCCCCccccccCC-------------------------ccceeeEEEEEEecceeeeccCCC-
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTMHTPN-------------------------REFLLRVSYLEIYNEVVNDLLNPA- 186 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM~g~~-------------------------~~f~V~vSylEIYnE~I~DLL~p~- 186 (861)
|+++|+|||+||||||||||||||||+|+. ..|.|+|||+|||||+|+|||++.
T Consensus 97 v~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 176 (359)
T 3nwn_A 97 VSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLP 176 (359)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTSSST
T ss_pred HHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcCCCCcEEEEEEEEEEecccccccccccc
Confidence 999999999999999999999999999742 248999999999999999999853
Q ss_pred -----CCCceeeeCCCCeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCce
Q 002982 187 -----GQNLRIREDSQGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEA 261 (861)
Q Consensus 187 -----~~~L~Ired~~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~ 261 (861)
...+.+++++.|++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|.+..... ....
T Consensus 177 ~~~~~~~~~~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~--~~~~ 254 (359)
T 3nwn_A 177 YVGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTL--SEEK 254 (359)
T ss_dssp TSCTTTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC---------C
T ss_pred ccccccccceEEecCCceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeecccc--cCcc
Confidence 346889999999999999999999999999999999999999999999999999999999998764322 2344
Q ss_pred eeeeeeeeeecCCCCC-ccccccchhhhhhhhcccchHHHHHHHHHHhcCCCCcccCCCCchhhhhhccCCCCccceeEE
Q 002982 262 VNLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLIC 340 (861)
Q Consensus 262 ~~~SkL~LVDLAGSEr-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIa 340 (861)
...|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||+|||||+|+|||
T Consensus 255 ~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGnskt~mI~ 334 (359)
T 3nwn_A 255 YITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVT 334 (359)
T ss_dssp CEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEEE
T ss_pred cccccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCCccEEEEE
Confidence 6789999999999999 678899999999999999999999999999998888999999999999999999999999999
Q ss_pred eeCCCCCChHHHHHHHHHHHHcccc
Q 002982 341 TVTPSSSSSEETHNTLKFAHRAKHI 365 (861)
Q Consensus 341 ~ISPs~~~~eETLsTLrFAsRAk~I 365 (861)
||||+..+++||++||+||+|||+|
T Consensus 335 ~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 335 NIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp EECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EeCCchhhHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999987
No 17
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=6.8e-80 Score=677.08 Aligned_cols=300 Identities=34% Similarity=0.508 Sum_probs=241.5
Q ss_pred CCCCeEEEEecCCCChhhhccCCeEEEec----CCC-EEEeCC-C--CCceeEeeceecCCCCcchhHHHHHHHHHHHHh
Q 002982 65 SKENVTVTVRFRPLSPREIRQGEEIAWYA----DGE-TILRNE-D--NPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGA 136 (861)
Q Consensus 65 ~~~~VkV~VRVRPl~~~E~~~g~~~~~~~----d~~-~iv~~~-~--~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~v 136 (861)
.+|+|+|+|||||+++.|...+..+.+.. .+. .+.... . ...+.|.||+||+++++|++||+. +.|+|+++
T Consensus 3 lkgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~-v~~lv~~~ 81 (349)
T 3t0q_A 3 LRGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKEIFEE-IRQLVQSS 81 (349)
T ss_dssp --CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC--CEEEEEEESEEECTTCCHHHHHHH-HHHHHHGG
T ss_pred CCCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCCCcccceeeecCEEECCCccHHHHHHH-HHHHHHHH
Confidence 47899999999999999987766655532 122 233221 1 224689999999999999999997 46999999
Q ss_pred hcCCCeeEEEecccCCCCccccccCC----------------------ccceeeEEEEEEecceeeeccCCCC-------
Q 002982 137 MDGINGTIFAYGVTSSGKTHTMHTPN----------------------REFLLRVSYLEIYNEVVNDLLNPAG------- 187 (861)
Q Consensus 137 l~GyN~tIfAYGqTGSGKTyTM~g~~----------------------~~f~V~vSylEIYnE~I~DLL~p~~------- 187 (861)
|+|||+||||||||||||||||+|++ ..|.|+|||+|||||.|+|||++..
T Consensus 82 l~G~n~tifAYGqTGSGKTyTm~g~~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~ 161 (349)
T 3t0q_A 82 LDGYNVCIFAYGQTGSGKTYTMLNAGDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDE 161 (349)
T ss_dssp GTTCEEEEEEECSTTSSHHHHHHSTTTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC----------
T ss_pred HCCcceeEEEeCCCCCCCceEeCCCCCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhcccccccccccccc
Confidence 99999999999999999999997542 3689999999999999999998643
Q ss_pred ----CCceeeeCC--CCeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCce
Q 002982 188 ----QNLRIREDS--QGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEA 261 (861)
Q Consensus 188 ----~~L~Ired~--~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~ 261 (861)
..+.|++++ .|+||.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++..... ..
T Consensus 162 ~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~----~~ 237 (349)
T 3t0q_A 162 ILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHT----GE 237 (349)
T ss_dssp -----CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEETTT----CC
T ss_pred ccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEecCC----CC
Confidence 467787765 46999999999999999999999999999999999999999999999999998765332 33
Q ss_pred eeeeeeeeeecCCCCC-ccccccchhhhhhhhcccchHHHHHHHHHHhcCCC--CcccCCCCchhhhhhccCCCCcccee
Q 002982 262 VNLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRA--THIPYRDSKLTRLLQSSLSGHGRVSL 338 (861)
Q Consensus 262 ~~~SkL~LVDLAGSEr-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~k~--~hIPYRDSKLTrLLqdSLGGNskT~m 338 (861)
...|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|+++.. .|||||||||||||||+||||++|+|
T Consensus 238 ~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~m 317 (349)
T 3t0q_A 238 TSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLM 317 (349)
T ss_dssp EEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTTCEEEE
T ss_pred eeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCCceEEE
Confidence 5789999999999999 67889999999999999999999999999988543 69999999999999999999999999
Q ss_pred EEeeCCCCCChHHHHHHHHHHHHcccccccc
Q 002982 339 ICTVTPSSSSSEETHNTLKFAHRAKHIEILA 369 (861)
Q Consensus 339 Ia~ISPs~~~~eETLsTLrFAsRAk~Ikn~~ 369 (861)
||||||+..+++||++||+||+|++.|+..+
T Consensus 318 i~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 318 FVNIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp EEEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred EEEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 9999999999999999999999999998654
No 18
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.6e-79 Score=669.62 Aligned_cols=297 Identities=37% Similarity=0.570 Sum_probs=250.7
Q ss_pred CCCCeEEEEecCCCChhhhccCC---eEEEec-CCCEEEeCCCCCceeEeeceecCCCCcchhHHHHHHHHHHHHhhcCC
Q 002982 65 SKENVTVTVRFRPLSPREIRQGE---EIAWYA-DGETILRNEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGI 140 (861)
Q Consensus 65 ~~~~VkV~VRVRPl~~~E~~~g~---~~~~~~-d~~~iv~~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~Gy 140 (861)
.+++|+|+|||||++..|...+. .+.+.. ++..+........+.|.||+||+++++|++||+.+ .|+|+.+|+||
T Consensus 2 ~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~l~G~ 80 (330)
T 2h58_A 2 SKGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQASQQDVFQEV-QALVTSCIDGF 80 (330)
T ss_dssp ---CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEETTEEEEEECSEEECTTCCHHHHHTTT-HHHHHHHHTTC
T ss_pred CCCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcCCCCeeEEecCeEeCCCCCcHhHHHHH-HHHHHHHhCCC
Confidence 47899999999999999865432 233433 33444444444567899999999999999999985 89999999999
Q ss_pred CeeEEEecccCCCCccccccCC-----------------------ccceeeEEEEEEecceeeeccCCCC-CCceee--e
Q 002982 141 NGTIFAYGVTSSGKTHTMHTPN-----------------------REFLLRVSYLEIYNEVVNDLLNPAG-QNLRIR--E 194 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~g~~-----------------------~~f~V~vSylEIYnE~I~DLL~p~~-~~L~Ir--e 194 (861)
|+||||||||||||||||+|+. ..|.|+|||+|||||+|+|||++.. ..+.|+ +
T Consensus 81 n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i~~~~ 160 (330)
T 2h58_A 81 NVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCP 160 (330)
T ss_dssp CEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSCCCCCCEECT
T ss_pred EEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhcccccccccceEEEee
Confidence 9999999999999999998642 3589999999999999999998754 344554 5
Q ss_pred CC-CCeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeeeeeeeeecC
Q 002982 195 DS-QGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLA 273 (861)
Q Consensus 195 d~-~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~SkL~LVDLA 273 (861)
|+ .|++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++.... ......|+|+|||||
T Consensus 161 ~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~----~~~~~~skL~lVDLA 236 (330)
T 2h58_A 161 DGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCS----TGLRTTGKLNLVDLA 236 (330)
T ss_dssp TSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETT----TTEEEEEEEEEEECC
T ss_pred cCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecC----CCcEEEEEEEEEeCC
Confidence 65 4699999999999999999999999999999999999999999999999999876432 235678999999999
Q ss_pred CCCC-ccccccchhhhhhhhcccchHHHHHHHHHHhcCCCCcccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHH
Q 002982 274 GSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEET 352 (861)
Q Consensus 274 GSEr-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISPs~~~~eET 352 (861)
|||| .++++.|.|++|+.+||+||++||+||.+|+++ ..|||||||||||||||+||||++|+|||||||+..+++||
T Consensus 237 GSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~-~~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~~~~ET 315 (330)
T 2h58_A 237 GSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSR-QGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSET 315 (330)
T ss_dssp CCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHH
T ss_pred CCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcC-CCCCcccccHHHHHHHHHhCCCceEEEEEEeCCccccHHHH
Confidence 9999 678899999999999999999999999999985 57999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcccccc
Q 002982 353 HNTLKFAHRAKHIEI 367 (861)
Q Consensus 353 LsTLrFAsRAk~Ikn 367 (861)
++||+||+|||+|+.
T Consensus 316 l~TL~fA~rak~i~~ 330 (330)
T 2h58_A 316 LYSLKFAERVRSVEL 330 (330)
T ss_dssp HHHHHHHHHHC----
T ss_pred HHHHHHHHHHhhCcC
Confidence 999999999999863
No 19
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=1.8e-79 Score=675.38 Aligned_cols=297 Identities=37% Similarity=0.530 Sum_probs=241.2
Q ss_pred CCCCCCeEEEEecCCCChhhhccCCeEEEecCCCEEEeCCC-----------CCceeEeeceecCCCCcchhHHHHHHHH
Q 002982 63 PSSKENVTVTVRFRPLSPREIRQGEEIAWYADGETILRNED-----------NPSIAYAYDRVFGPTTTTRHVYDIAAQH 131 (861)
Q Consensus 63 ~~~~~~VkV~VRVRPl~~~E~~~g~~~~~~~d~~~iv~~~~-----------~~~~~F~FD~VF~~~atQeeVY~~~~~p 131 (861)
.+.+|+|+|+|||||+...+. ..+.+..++..+..... ...+.|.||+||+ +++|++||+.++.|
T Consensus 19 ~~~~g~IrV~vRvRP~~~~~~---~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy~~~~~~ 94 (358)
T 2nr8_A 19 SGTRKKVHAFVRVKPTDDFAH---EMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKD 94 (358)
T ss_dssp ----CCEEEEEEECCCSSCCT---TTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHH
T ss_pred CCCCCCeEEEEEcCCCCCCcc---ceeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHHHHHHHH
Confidence 345899999999999976432 23445556665543221 2346899999995 78999999999999
Q ss_pred HHHHhhcCCCeeEEEecccCCCCccccccCC-------------------------ccceeeEEEEEEecceeeeccCCC
Q 002982 132 VVSGAMDGINGTIFAYGVTSSGKTHTMHTPN-------------------------REFLLRVSYLEIYNEVVNDLLNPA 186 (861)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM~g~~-------------------------~~f~V~vSylEIYnE~I~DLL~p~ 186 (861)
+|+.+|+|||+||||||||||||||||+|+. ..|.|+|||+|||||+|+|||++.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 174 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTL 174 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTSSS
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhhcCCceEEEEEEEEEEeCCeeeECcCCc
Confidence 9999999999999999999999999998743 258999999999999999999863
Q ss_pred ------CCCceeeeCCCCeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCc
Q 002982 187 ------GQNLRIREDSQGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGE 260 (861)
Q Consensus 187 ------~~~L~Ired~~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~ 260 (861)
..++.|++++.|+||.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++..... ...
T Consensus 175 ~~~~~~~~~l~i~e~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~--~~~ 252 (358)
T 2nr8_A 175 PYVGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTL--SEE 252 (358)
T ss_dssp TTSCTTTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC---------
T ss_pred cccCccCCceEEEECCCceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEEeccC--CCC
Confidence 357999999999999999999999999999999999999999999999999999999999998764322 223
Q ss_pred eeeeeeeeeeecCCCCC-ccccccchhhhhhhhcccchHHHHHHHHHHhcCCCCcccCCCCchhhhhhccCCCCccceeE
Q 002982 261 AVNLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLI 339 (861)
Q Consensus 261 ~~~~SkL~LVDLAGSEr-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mI 339 (861)
....|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||+|||||+|+||
T Consensus 253 ~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mI 332 (358)
T 2nr8_A 253 KYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLV 332 (358)
T ss_dssp CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEE
T ss_pred CEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCCeEEEE
Confidence 45689999999999999 57889999999999999999999999999998877899999999999999999999999999
Q ss_pred EeeCCCCCChHHHHHHHHHHHHcccc
Q 002982 340 CTVTPSSSSSEETHNTLKFAHRAKHI 365 (861)
Q Consensus 340 a~ISPs~~~~eETLsTLrFAsRAk~I 365 (861)
|||||+..+++|||+||+||+|||.|
T Consensus 333 a~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 333 TNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp EEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999986
No 20
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=4.1e-79 Score=676.16 Aligned_cols=302 Identities=34% Similarity=0.478 Sum_probs=230.1
Q ss_pred CCCCCCCCCCCeEEEEecCCCChhhhccCCe-EEEe-------cCCCEEEeCC-------------CCCceeEeeceecC
Q 002982 58 YYTENPSSKENVTVTVRFRPLSPREIRQGEE-IAWY-------ADGETILRNE-------------DNPSIAYAYDRVFG 116 (861)
Q Consensus 58 ~~~~~~~~~~~VkV~VRVRPl~~~E~~~g~~-~~~~-------~d~~~iv~~~-------------~~~~~~F~FD~VF~ 116 (861)
..+.-.+.+++|+|+|||||+++.|...+.. +.+. .++..+.+.. ....+.|.||+||+
T Consensus 13 ~hn~~~~~~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~ 92 (376)
T 2rep_A 13 GLVPRGSLKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVFP 92 (376)
T ss_dssp ----------CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSEEEC
T ss_pred ccchhhccCCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEEcC
Confidence 3455567789999999999999999766532 2111 2333443322 11245799999999
Q ss_pred CCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccccCC----------------------------ccceee
Q 002982 117 PTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMHTPN----------------------------REFLLR 168 (861)
Q Consensus 117 ~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~g~~----------------------------~~f~V~ 168 (861)
++++|++||+.+ .|+|+.+|+|||+||||||||||||||||+|+. ..|.|+
T Consensus 93 ~~~~Q~~Vy~~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~ 171 (376)
T 2rep_A 93 PGSGQDEVFEEI-AMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFV 171 (376)
T ss_dssp TTCCHHHHHHHH-HHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEEEE
T ss_pred CcccchhhhhhH-HHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEEEE
Confidence 999999999985 589999999999999999999999999998742 258999
Q ss_pred EEEEEEecceeeeccCCC-----CCCceeeeCC---CCeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCc
Q 002982 169 VSYLEIYNEVVNDLLNPA-----GQNLRIREDS---QGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRS 240 (861)
Q Consensus 169 vSylEIYnE~I~DLL~p~-----~~~L~Ired~---~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRS 240 (861)
|||+|||||+|+|||++. ...+.|+++. .|++|.|++++.|.+++|++.+|..|.++|++++|.||..||||
T Consensus 172 vS~~EIYnE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRS 251 (376)
T 2rep_A 172 ASYVEIYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRS 251 (376)
T ss_dssp EEEEEEETTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGGGS
T ss_pred EEEEEEECCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCCCc
Confidence 999999999999999875 2468899883 57999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEEeccCCCCCCCceeeeeeeeeeecCCCCC-ccccccc----hhhhhhhhcccchHHHHHHHHHHhcCCCCcc
Q 002982 241 HTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGSES-SKAETTG----VRRKEGSYINKSLLTLGTVISKLTDGRATHI 315 (861)
Q Consensus 241 H~IftI~Veq~~~~~~~~~~~~~~SkL~LVDLAGSEr-~kt~~~G----~rlkEg~~INkSL~aLg~VI~ALs~~k~~hI 315 (861)
|+||+|+|++..... .....|+|+||||||||| .++++.| .|++|+.+||+||++||+||.+|+++ ..||
T Consensus 252 H~Ifti~v~~~~~~~----~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~-~~hV 326 (376)
T 2rep_A 252 HSVFQLQISGEHSSR----GLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNK-ESHV 326 (376)
T ss_dssp EEEEEEEEEEEESSS----CCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHTT-CSCC
T ss_pred eEEEEEEEEEEecCC----CcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcC-CCcc
Confidence 999999998764322 345679999999999999 5677888 99999999999999999999999985 5899
Q ss_pred cCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHHHHHHHHHHcccc
Q 002982 316 PYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETHNTLKFAHRAKHI 365 (861)
Q Consensus 316 PYRDSKLTrLLqdSLGGNskT~mIa~ISPs~~~~eETLsTLrFAsRAk~I 365 (861)
|||||||||||||+||||++|+|||||||+..+++|||+||+||+|++++
T Consensus 327 PYRdSkLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 327 PYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp CGGGSHHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred CCcCCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999864
No 21
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=3e-79 Score=678.61 Aligned_cols=292 Identities=35% Similarity=0.509 Sum_probs=238.4
Q ss_pred CCCeEEEEecCCCChhhhccCCeE-EEecCCCEEEeCCCC---------CceeEeeceecCCCCcchhHHHHHHHHHHHH
Q 002982 66 KENVTVTVRFRPLSPREIRQGEEI-AWYADGETILRNEDN---------PSIAYAYDRVFGPTTTTRHVYDIAAQHVVSG 135 (861)
Q Consensus 66 ~~~VkV~VRVRPl~~~E~~~g~~~-~~~~d~~~iv~~~~~---------~~~~F~FD~VF~~~atQeeVY~~~~~plV~~ 135 (861)
.++|+|+|||||++..|...+... +..++...+++..+. ....|.||+||+++++|++||+.++.|+|++
T Consensus 50 ~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ~~Vy~~~~~plv~~ 129 (387)
T 2heh_A 50 EHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQT 129 (387)
T ss_dssp CCSEEEEEEECCCCHHHHHTTCCBCEECCBSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHHH
T ss_pred CCCeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCCccccccccccccEEeeeEEEecCCCceeehhhhHHHHHHH
Confidence 789999999999999998877643 334444444432211 2357999999999999999999999999999
Q ss_pred hhcCCCeeEEEecccCCCCccccccC------------------------------CccceeeEEEEEEecceeeeccCC
Q 002982 136 AMDGINGTIFAYGVTSSGKTHTMHTP------------------------------NREFLLRVSYLEIYNEVVNDLLNP 185 (861)
Q Consensus 136 vl~GyN~tIfAYGqTGSGKTyTM~g~------------------------------~~~f~V~vSylEIYnE~I~DLL~p 185 (861)
+|+|||+||||||||||||||||+|+ +..|.|+|||+|||||+|+|||++
T Consensus 130 ~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v~DLL~~ 209 (387)
T 2heh_A 130 IFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNK 209 (387)
T ss_dssp HHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTEEEETTTT
T ss_pred HhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCeEEECCCC
Confidence 99999999999999999999999873 125889999999999999999997
Q ss_pred CCCCceeeeCCC-CeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeee
Q 002982 186 AGQNLRIREDSQ-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNL 264 (861)
Q Consensus 186 ~~~~L~Ired~~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~ 264 (861)
. ..+.|++|+. |+||.||+++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++. ....
T Consensus 210 ~-~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~---------~~~~ 279 (387)
T 2heh_A 210 K-AKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAK---------GRMH 279 (387)
T ss_dssp T-EECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEESS---------SSEE
T ss_pred C-ccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEEEC---------Ceee
Confidence 5 4799999985 699999999999999999999999999999999999999999999999999854 1467
Q ss_pred eeeeeeecCCCCCc-ccc-ccchhhhhhhhcccchHHHHHHHHHHhcCCCCcccCCCCchhhhhhcc-CCCCccceeEEe
Q 002982 265 SQLHLIDLAGSESS-KAE-TTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSS-LSGHGRVSLICT 341 (861)
Q Consensus 265 SkL~LVDLAGSEr~-kt~-~~G~rlkEg~~INkSL~aLg~VI~ALs~~k~~hIPYRDSKLTrLLqdS-LGGNskT~mIa~ 341 (861)
|+|+|||||||||. +++ ..|.+++|+.+||+||++||+||.+|+++ ..|||||||||||||||+ |||||+|+||||
T Consensus 280 skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~-~~hvPYRdSKLTrlLqdsllGgnskT~mIa~ 358 (387)
T 2heh_A 280 GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN-KAHTPFRESKLTQVLRDSFIGENSRTCMIAT 358 (387)
T ss_dssp EEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHTGGGGSSTTEEEEEEEE
T ss_pred eEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcC-CCCCCccccHHHHHHhhhccCCCCeEEEEEE
Confidence 99999999999994 454 56788999999999999999999999985 589999999999999999 699999999999
Q ss_pred eCCCCCChHHHHHHHHHHHHccccccc
Q 002982 342 VTPSSSSSEETHNTLKFAHRAKHIEIL 368 (861)
Q Consensus 342 ISPs~~~~eETLsTLrFAsRAk~Ikn~ 368 (861)
|||+..+++||++||+||+|||+|++.
T Consensus 359 isP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 359 ISPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp ECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred eCCccchHHHHHHHHHHHHHhccCcCC
Confidence 999999999999999999999999864
No 22
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=3.4e-79 Score=671.02 Aligned_cols=300 Identities=33% Similarity=0.487 Sum_probs=244.5
Q ss_pred CCCeEEEEecCCCCh-hhhccCCeEEEec----CCC-EEEeC---CCCCceeEeeceecCCCCcchhHHHHHHHHHHHHh
Q 002982 66 KENVTVTVRFRPLSP-REIRQGEEIAWYA----DGE-TILRN---EDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGA 136 (861)
Q Consensus 66 ~~~VkV~VRVRPl~~-~E~~~g~~~~~~~----d~~-~iv~~---~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~v 136 (861)
+++|+|+|||||+++ .|......+.+.. ++. .+... .....+.|.||+||+++++|++||+.+ .|+|+.+
T Consensus 2 k~nIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~ 80 (347)
T 1f9v_A 2 RGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEV-GQLVQSS 80 (347)
T ss_dssp -CEEEEEEEECCCCTTTCCCTTEEEEECCCBTTTTBEEEEEEEGGGTTCEEEEEESEEECTTCCHHHHHHHH-HHHHGGG
T ss_pred CCCeEEEEEeCCCCcccccCCCceEEEecccCCCCceEEEEecCCCCcCceEEeeCEEECCCCCHHHHHHHH-HHHHHHh
Confidence 689999999999998 4433222333221 122 23222 223457899999999999999999985 6999999
Q ss_pred hcCCCeeEEEecccCCCCccccccCC----------------------ccceeeEEEEEEecceeeeccCCCCC------
Q 002982 137 MDGINGTIFAYGVTSSGKTHTMHTPN----------------------REFLLRVSYLEIYNEVVNDLLNPAGQ------ 188 (861)
Q Consensus 137 l~GyN~tIfAYGqTGSGKTyTM~g~~----------------------~~f~V~vSylEIYnE~I~DLL~p~~~------ 188 (861)
|+|||+||||||||||||||||+|++ ..|.|+|||+|||||+|+|||++...
T Consensus 81 l~G~n~tifAYGqTGSGKTyTM~G~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~ 160 (347)
T 1f9v_A 81 LDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTS 160 (347)
T ss_dssp GGTCCEEEEEECCTTSSHHHHHHSTTTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC----------
T ss_pred cCCceeEEEEECCCCCCCcEeccCCCCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCccccccccc
Confidence 99999999999999999999998642 36899999999999999999987643
Q ss_pred ---CceeeeCC--CCeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceee
Q 002982 189 ---NLRIREDS--QGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVN 263 (861)
Q Consensus 189 ---~L~Ired~--~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~ 263 (861)
.+.|++++ .|++|.|++++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|.+.... .....
T Consensus 161 ~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~----~~~~~ 236 (347)
T 1f9v_A 161 IGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAK----TGAHS 236 (347)
T ss_dssp ---CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC------CCEE
T ss_pred cCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCC----CCcee
Confidence 47788764 4699999999999999999999999999999999999999999999999999876432 23467
Q ss_pred eeeeeeeecCCCCC-ccccccchhhhhhhhcccchHHHHHHHHHHhcCC--CCcccCCCCchhhhhhccCCCCccceeEE
Q 002982 264 LSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGR--ATHIPYRDSKLTRLLQSSLSGHGRVSLIC 340 (861)
Q Consensus 264 ~SkL~LVDLAGSEr-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~k--~~hIPYRDSKLTrLLqdSLGGNskT~mIa 340 (861)
.|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|++++ ..|||||||||||||||+||||++|+|||
T Consensus 237 ~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mI~ 316 (347)
T 1f9v_A 237 YGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFV 316 (347)
T ss_dssp EEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEEEEEE
T ss_pred eeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCCccEEEEE
Confidence 89999999999999 5788999999999999999999999999999865 47999999999999999999999999999
Q ss_pred eeCCCCCChHHHHHHHHHHHHccccccccc
Q 002982 341 TVTPSSSSSEETHNTLKFAHRAKHIEILAA 370 (861)
Q Consensus 341 ~ISPs~~~~eETLsTLrFAsRAk~Ikn~~~ 370 (861)
||||+..+++||++||+||+|+++|++.+.
T Consensus 317 ~vsP~~~~~~ETl~TLrfA~r~~~i~~~~r 346 (347)
T 1f9v_A 317 NISPSSSHINETLNSLRFASKVNSTRLVSR 346 (347)
T ss_dssp EECCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred EeCCccccHHHHHHHHHHHHHHhhhccCCC
Confidence 999999999999999999999999998764
No 23
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=6e-79 Score=680.13 Aligned_cols=294 Identities=35% Similarity=0.502 Sum_probs=240.5
Q ss_pred CCCeEEEEecCCCChhhhccCCeE-EEecCCCEEEeCCCC---------CceeEeeceecCCCCcchhHHHHHHHHHHHH
Q 002982 66 KENVTVTVRFRPLSPREIRQGEEI-AWYADGETILRNEDN---------PSIAYAYDRVFGPTTTTRHVYDIAAQHVVSG 135 (861)
Q Consensus 66 ~~~VkV~VRVRPl~~~E~~~g~~~-~~~~d~~~iv~~~~~---------~~~~F~FD~VF~~~atQeeVY~~~~~plV~~ 135 (861)
.++|+|+|||||++..|...+... +...++.++++..+. ....|.||+||+++++|++||+.++.|+|++
T Consensus 70 ~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~Vy~~~~~plV~~ 149 (410)
T 1v8k_A 70 EHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQT 149 (410)
T ss_dssp CCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHHH
T ss_pred CCCeEEEEEeCCCChhHhhcCCccEEEECCCCEEEEecCcccccccccccceEEeeeEEEecCCChhhhhHHHHHHHHHH
Confidence 689999999999999998877653 334445554433211 2357999999999999999999999999999
Q ss_pred hhcCCCeeEEEecccCCCCccccccC------------------------------CccceeeEEEEEEecceeeeccCC
Q 002982 136 AMDGINGTIFAYGVTSSGKTHTMHTP------------------------------NREFLLRVSYLEIYNEVVNDLLNP 185 (861)
Q Consensus 136 vl~GyN~tIfAYGqTGSGKTyTM~g~------------------------------~~~f~V~vSylEIYnE~I~DLL~p 185 (861)
+|+|||+||||||||||||||||+|+ +..|.|+|||+|||||+|+|||++
T Consensus 150 ~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~ 229 (410)
T 1v8k_A 150 IFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNK 229 (410)
T ss_dssp HHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEETTTT
T ss_pred HhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEEEEEeeCCEEEECCCC
Confidence 99999999999999999999999873 124889999999999999999997
Q ss_pred CCCCceeeeCCC-CeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeee
Q 002982 186 AGQNLRIREDSQ-GTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNL 264 (861)
Q Consensus 186 ~~~~L~Ired~~-G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~ 264 (861)
. ..+.|++|+. |+||.||+++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|.+.. ...
T Consensus 230 ~-~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~---------~~~ 299 (410)
T 1v8k_A 230 K-AKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKG---------RLH 299 (410)
T ss_dssp T-EEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESSS---------SEE
T ss_pred C-CCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEEeCC---------cce
Confidence 5 4799999985 6999999999999999999999999999999999999999999999999998641 367
Q ss_pred eeeeeeecCCCCCc-ccc-ccchhhhhhhhcccchHHHHHHHHHHhcCCCCcccCCCCchhhhhhcc-CCCCccceeEEe
Q 002982 265 SQLHLIDLAGSESS-KAE-TTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSS-LSGHGRVSLICT 341 (861)
Q Consensus 265 SkL~LVDLAGSEr~-kt~-~~G~rlkEg~~INkSL~aLg~VI~ALs~~k~~hIPYRDSKLTrLLqdS-LGGNskT~mIa~ 341 (861)
|+|+|||||||||. +++ ..|.+++|+.+||+||++||+||.+|+.+ ..|||||||||||||||+ |||||+|+||||
T Consensus 300 skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~-~~hIPYRdSKLTrLLqdsllGgnskT~mIa~ 378 (410)
T 1v8k_A 300 GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN-KAHTPFRESKLTQVLRDSFIGENSRTCMIAM 378 (410)
T ss_dssp EEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC-------CCCCHHHHHTTHHHHSSSEEEEEEEE
T ss_pred eEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcC-CCCCCcccchhHHHHhhcccCCCceEEEEEE
Confidence 99999999999994 454 56788999999999999999999999975 579999999999999999 699999999999
Q ss_pred eCCCCCChHHHHHHHHHHHHccccccccc
Q 002982 342 VTPSSSSSEETHNTLKFAHRAKHIEILAA 370 (861)
Q Consensus 342 ISPs~~~~eETLsTLrFAsRAk~Ikn~~~ 370 (861)
|||+..+++|||+||+||+|||.|...|.
T Consensus 379 iSP~~~~~~ETlsTLrfA~rak~i~~~~~ 407 (410)
T 1v8k_A 379 ISPGISSCEYTLNTLRYADRVKELSHHHH 407 (410)
T ss_dssp ECCBGGGHHHHHHHHHHHHHHHTTC----
T ss_pred eCCccccHHHHHHHHHHHHHhccCCCCCC
Confidence 99999999999999999999999987664
No 24
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=6.4e-79 Score=671.41 Aligned_cols=297 Identities=30% Similarity=0.433 Sum_probs=249.0
Q ss_pred CeEEEEecCCCChhhhccCCe-EEEecCCCEEEeCCCC---------CceeEeeceecCCCCcchhHHHHHHHHHHHHhh
Q 002982 68 NVTVTVRFRPLSPREIRQGEE-IAWYADGETILRNEDN---------PSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAM 137 (861)
Q Consensus 68 ~VkV~VRVRPl~~~E~~~g~~-~~~~~d~~~iv~~~~~---------~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl 137 (861)
+|+|+|||||++..|...+.. ++...++.++++..+. ....|.||+||+++++|++||+.++.|+|+++|
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~ 80 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLY 80 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEEETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhhc
Confidence 599999999999999877654 3344455555543221 235799999999999999999999999999999
Q ss_pred c-CCCeeEEEecccCCCCccccccCC----------------------------ccceeeEEEEEEecceeeeccCCCCC
Q 002982 138 D-GINGTIFAYGVTSSGKTHTMHTPN----------------------------REFLLRVSYLEIYNEVVNDLLNPAGQ 188 (861)
Q Consensus 138 ~-GyN~tIfAYGqTGSGKTyTM~g~~----------------------------~~f~V~vSylEIYnE~I~DLL~p~~~ 188 (861)
+ |||+||||||||||||||||+|+. ..|.|+|||+|||||+|+|||++..
T Consensus 81 ~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~- 159 (360)
T 1ry6_A 81 ENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRK- 159 (360)
T ss_dssp HHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC---
T ss_pred cCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccCCc-
Confidence 5 999999999999999999998752 2478999999999999999998764
Q ss_pred CceeeeCC-CCeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeeeee
Q 002982 189 NLRIREDS-QGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQL 267 (861)
Q Consensus 189 ~L~Ired~-~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~SkL 267 (861)
.+.+++++ .|++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++.. .....|+|
T Consensus 160 ~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~-------~~~~~skL 232 (360)
T 1ry6_A 160 MVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN-------KNTSLGKI 232 (360)
T ss_dssp ---------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETT-------TTEEEEEE
T ss_pred cceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEecc-------CCcceeEE
Confidence 56777877 46999999999999999999999999999999999999999999999999998642 22567999
Q ss_pred eeeecCCCCC-ccccccc-hhhhhhhhcccchHHHHHHHHHHhcCCCCcccCCCCchhhhhhccCCCCccceeEEeeCCC
Q 002982 268 HLIDLAGSES-SKAETTG-VRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPS 345 (861)
Q Consensus 268 ~LVDLAGSEr-~kt~~~G-~rlkEg~~INkSL~aLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISPs 345 (861)
+||||||||| .++++.| .+++|+.+||+||++||+||.+|+.+ ..|||||||||||||||+|||||+|+|||||||+
T Consensus 233 ~lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~-~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~ 311 (360)
T 1ry6_A 233 AFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSD-KNHIPFRDSELTKVLRDIFVGKSKSIMIANISPT 311 (360)
T ss_dssp EEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTS-TTSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCB
T ss_pred EEEECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcC-CCCCccccCHHHHHHHHHhCCCCeEEEEEEeCCC
Confidence 9999999999 5566655 57899999999999999999999875 4799999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcccccccccccc
Q 002982 346 SSSSEETHNTLKFAHRAKHIEILAAQNK 373 (861)
Q Consensus 346 ~~~~eETLsTLrFAsRAk~Ikn~~~~N~ 373 (861)
..+++||++||+||+|||+|+|.+..|+
T Consensus 312 ~~~~~ETlsTLrfA~rak~i~n~~~~~~ 339 (360)
T 1ry6_A 312 ISCCEQTLNTLRYSSRVKNKGNSKLEGK 339 (360)
T ss_dssp GGGHHHHHHHHHHHHHHCC---------
T ss_pred cccHHHHHHHHHHHHHHhhcccCcccCC
Confidence 9999999999999999999999776664
No 25
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-78 Score=672.75 Aligned_cols=301 Identities=34% Similarity=0.493 Sum_probs=249.0
Q ss_pred CCCCeEEEEecCCCChh-hhccCCeEEEe-cCC---C-EEEe---CCCCCceeEeeceecCCCCcchhHHHHHHHHHHHH
Q 002982 65 SKENVTVTVRFRPLSPR-EIRQGEEIAWY-ADG---E-TILR---NEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSG 135 (861)
Q Consensus 65 ~~~~VkV~VRVRPl~~~-E~~~g~~~~~~-~d~---~-~iv~---~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~ 135 (861)
.+|+|+|+|||||+.+. |......+.+. .+. . .+.. ......+.|.||+||+++++|++||+.+ .|+|++
T Consensus 57 lkgnIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~v-~~lv~~ 135 (403)
T 4etp_A 57 LRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEV-GQLVQS 135 (403)
T ss_dssp HHCSEEEEEEECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEECSSSCEEEEEEESEEECTTCCHHHHHHHH-HHHHHH
T ss_pred cCCCeEEEEEeCCCCCcccccCCCeeEEeeccCCCCceEEEEecCCCCcCceEEEcCEEECCCCchHHHHHHH-HHHHHH
Confidence 46899999999999887 33333333332 111 1 2221 1222346899999999999999999975 589999
Q ss_pred hhcCCCeeEEEecccCCCCccccccCC----------------------ccceeeEEEEEEecceeeeccCCCC------
Q 002982 136 AMDGINGTIFAYGVTSSGKTHTMHTPN----------------------REFLLRVSYLEIYNEVVNDLLNPAG------ 187 (861)
Q Consensus 136 vl~GyN~tIfAYGqTGSGKTyTM~g~~----------------------~~f~V~vSylEIYnE~I~DLL~p~~------ 187 (861)
+|+|||+||||||||||||||||+|++ ..|.|+|||+|||||.|+|||++..
T Consensus 136 ~l~G~N~tifAYGqTGSGKTyTM~g~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~ 215 (403)
T 4etp_A 136 SLDGYNVAIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDT 215 (403)
T ss_dssp HHTTCCEEEEEESCTTSSHHHHHHCTTTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTEEEETTCC--------
T ss_pred HhCCcceEEEEECCCCCCCceEeCCCCCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecceeeEccCCcccccccc
Confidence 999999999999999999999998642 3689999999999999999998753
Q ss_pred ---CCceeeeCC--CCeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCcee
Q 002982 188 ---QNLRIREDS--QGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAV 262 (861)
Q Consensus 188 ---~~L~Ired~--~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~ 262 (861)
..+.+++++ .|++|.|++++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|.+..... ...
T Consensus 216 ~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~----~~~ 291 (403)
T 4etp_A 216 SIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKT----GAH 291 (403)
T ss_dssp CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEEEEEETTT----CCE
T ss_pred ccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEEEEeecCC----CCe
Confidence 356777765 45999999999999999999999999999999999999999999999999998764322 335
Q ss_pred eeeeeeeeecCCCCC-ccccccchhhhhhhhcccchHHHHHHHHHHhcCCC--CcccCCCCchhhhhhccCCCCccceeE
Q 002982 263 NLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRA--THIPYRDSKLTRLLQSSLSGHGRVSLI 339 (861)
Q Consensus 263 ~~SkL~LVDLAGSEr-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~k~--~hIPYRDSKLTrLLqdSLGGNskT~mI 339 (861)
..|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|+++.. .|||||||||||||||+|||||+|+||
T Consensus 292 ~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mi 371 (403)
T 4etp_A 292 SYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMF 371 (403)
T ss_dssp EEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTSTTCEEEEE
T ss_pred eEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccchHHHHHHHhcCCCceEEEE
Confidence 679999999999999 67889999999999999999999999999987543 699999999999999999999999999
Q ss_pred EeeCCCCCChHHHHHHHHHHHHccccccccc
Q 002982 340 CTVTPSSSSSEETHNTLKFAHRAKHIEILAA 370 (861)
Q Consensus 340 a~ISPs~~~~eETLsTLrFAsRAk~Ikn~~~ 370 (861)
|||||+..+++||++||+||+|++.|++.+.
T Consensus 372 ~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~r 402 (403)
T 4etp_A 372 VNISPSSSHINETLNSLRFASKVNSTRLVSR 402 (403)
T ss_dssp EEECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred EEeCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence 9999999999999999999999999988764
No 26
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=1.2e-77 Score=671.34 Aligned_cols=301 Identities=34% Similarity=0.522 Sum_probs=247.7
Q ss_pred CCCCeEEEEecCCCChhhhccCCeEEEecCCCEEEeCCCC-------CceeEeeceecCCCCcchhHHHHHHHHHHHHhh
Q 002982 65 SKENVTVTVRFRPLSPREIRQGEEIAWYADGETILRNEDN-------PSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAM 137 (861)
Q Consensus 65 ~~~~VkV~VRVRPl~~~E~~~g~~~~~~~d~~~iv~~~~~-------~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl 137 (861)
.+|+|+|+|||||+.+.|...+...+...++.++...... ....|.||+||+++++|++||+. +.|+|+++|
T Consensus 57 l~gnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~-v~plv~~~l 135 (412)
T 3u06_A 57 LRDNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEM-VSPLIQSAL 135 (412)
T ss_dssp HTCSEEEEEEECCCCGGGTTSCBCEEEEEETTEEEEECCC-------CCCEEECSEEECTTCCHHHHHTT-THHHHHHHH
T ss_pred hCCCEEEEEEcCCCCchhccCcceEEEecCCCEEEEecCCcccccccCceEEeeCeEcCCCCCHHHHHHH-HHHHHHHHH
Confidence 4799999999999999997766555555566655443211 23579999999999999999985 569999999
Q ss_pred cCCCeeEEEecccCCCCccccccC------------------------CccceeeEEEEEEecceeeeccCCCCCCceee
Q 002982 138 DGINGTIFAYGVTSSGKTHTMHTP------------------------NREFLLRVSYLEIYNEVVNDLLNPAGQNLRIR 193 (861)
Q Consensus 138 ~GyN~tIfAYGqTGSGKTyTM~g~------------------------~~~f~V~vSylEIYnE~I~DLL~p~~~~L~Ir 193 (861)
+|||+||||||||||||||||+|. +..|.|+|||+|||||.|+|||++....+.++
T Consensus 136 ~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~i~ 215 (412)
T 3u06_A 136 DGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIR 215 (412)
T ss_dssp TTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTCCSCCCCCEE
T ss_pred CCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeEEcCCCCCCCceee
Confidence 999999999999999999999853 24689999999999999999999877766665
Q ss_pred --eCC-CCeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeeeeeeee
Q 002982 194 --EDS-QGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLI 270 (861)
Q Consensus 194 --ed~-~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~SkL~LV 270 (861)
+++ .|+||.|++++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|.+.... ......|+|+||
T Consensus 216 ~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~----~~~~~~~kL~lV 291 (412)
T 3u06_A 216 MAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAE----KQEISVGSINLV 291 (412)
T ss_dssp ECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEETT----TTEEEEEEEEEE
T ss_pred eeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeCC----CCCEEEEEEEEE
Confidence 444 4699999999999999999999999999999999999999999999999999876432 234678999999
Q ss_pred ecCCCCCccccccchhhhhhhhcccchHHHHHHHHHHhcCCCCcccCCCCchhhhhhccCCCCccceeEEeeCCCCCChH
Q 002982 271 DLAGSESSKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSE 350 (861)
Q Consensus 271 DLAGSEr~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISPs~~~~e 350 (861)
||||||+.+ .|.|++|+.+||+||++||+||.+|+++ ..|||||||||||||||+|||||+|+|||||||+..+++
T Consensus 292 DLAGSEr~~---~~~rl~E~~~INkSL~aLg~vI~aL~~~-~~hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP~~~~~~ 367 (412)
T 3u06_A 292 DLAGSESPK---TSTRMTETKNINRSLSELTNVILALLQK-QDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQ 367 (412)
T ss_dssp ECCCCCC-------------CTTTHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHHGGGTSTTCEEEEEEEECCBGGGHH
T ss_pred ECCCCCcCC---ccchhHhHHHHhHHHHHHHHHHHHHhcc-CCCCCccccHHHHHHHHhcCCCceEEEEEEeCCChhhHH
Confidence 999999864 3689999999999999999999999985 589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccccccc-cccccc
Q 002982 351 ETHNTLKFAHRAKHIEIL-AAQNKL 374 (861)
Q Consensus 351 ETLsTLrFAsRAk~Ikn~-~~~N~l 374 (861)
||++||+||+|++.|+.. ++.|.+
T Consensus 368 ETl~TLrfA~rv~~i~~~~~~~n~~ 392 (412)
T 3u06_A 368 ESVKSLRFAASVNSCKMTKAKRNRY 392 (412)
T ss_dssp HHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHHhhccccccccccc
Confidence 999999999999999854 455543
No 27
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=1.2e-76 Score=649.87 Aligned_cols=288 Identities=30% Similarity=0.458 Sum_probs=225.6
Q ss_pred CCCCCCeEEEEecCCCChhhhccCCeEEEec---CCCEEEeCCCCCceeEeeceecCCCCcchhHHHHHHHHHHHHhhcC
Q 002982 63 PSSKENVTVTVRFRPLSPREIRQGEEIAWYA---DGETILRNEDNPSIAYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDG 139 (861)
Q Consensus 63 ~~~~~~VkV~VRVRPl~~~E~~~g~~~~~~~---d~~~iv~~~~~~~~~F~FD~VF~~~atQeeVY~~~~~plV~~vl~G 139 (861)
....++|+|+|||||+++.|......++..+ ++..++.. .+.|.||+||+++++|++||+.++.|+|+.+|+|
T Consensus 18 ~~~~~~VrV~vRvRP~~~~e~~~~~~~v~~~~~~~~~~~~~~----~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G 93 (344)
T 3dc4_A 18 GAKLSAVRIAVREAPYRQFLGRREPSVVQFPPWSDGKSLIVD----QNEFHFDHAFPATISQDEMYQALILPLVDKLLEG 93 (344)
T ss_dssp -CCCSEEEEEEEECCCC-------CCSEECCSSSCSSEEEET----TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCcccccCCceEEEecCCCCCceEEec----CcEEEcceEECCCCCHHHHHHhhccchhhHhhCC
Confidence 3446899999999999988754433344433 35555543 3689999999999999999999999999999999
Q ss_pred CCeeEEEecccCCCCccccccCC-------------------------------ccceeeEEEEEEecceeeeccCCCCC
Q 002982 140 INGTIFAYGVTSSGKTHTMHTPN-------------------------------REFLLRVSYLEIYNEVVNDLLNPAGQ 188 (861)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM~g~~-------------------------------~~f~V~vSylEIYnE~I~DLL~p~~~ 188 (861)
||+||||||||||||||||+|.. ..|.|+|||+|||||+|+|||++...
T Consensus 94 ~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~ 173 (344)
T 3dc4_A 94 FQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPH 173 (344)
T ss_dssp CCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEEETTSSCTT
T ss_pred CceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCeeEEccCCCCC
Confidence 99999999999999999997431 24889999999999999999987653
Q ss_pred CceeeeCCCCeEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeeeeee
Q 002982 189 NLRIREDSQGTFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLH 268 (861)
Q Consensus 189 ~L~Ired~~G~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~SkL~ 268 (861)
...+ +..+.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++. ...|+|+
T Consensus 174 ~~~~-----~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~----------~~~skl~ 238 (344)
T 3dc4_A 174 MPMV-----AARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK----------THHSRMN 238 (344)
T ss_dssp SBCC-----SSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS----------SCEEEEE
T ss_pred Cccc-----cccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec----------CcEEEEE
Confidence 2221 233468999999999999999999999999999999999999999999999753 3568999
Q ss_pred eeecCCCCC-ccccccchhhhhhhhcccchHHHHHHHHHHhcCCCCcccCCCCchhhhhhccCCCCccceeEEeeCCCCC
Q 002982 269 LIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSS 347 (861)
Q Consensus 269 LVDLAGSEr-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISPs~~ 347 (861)
||||||||| .++++.|.+++|+.+||+||++||+||.+|+.++ .|||||||||||||||+||||++|+|||||||+..
T Consensus 239 lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~-~hiPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~ 317 (344)
T 3dc4_A 239 IVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGH-TVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQC 317 (344)
T ss_dssp EEECCCCCCC-------------CCSCCHHHHHHHHHHHHHTTC-SSCCGGGSHHHHHTTTTSSTTCEEEEEEEECCCGG
T ss_pred EEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccC-CcCCccccHHHHHHHHHhCCCCEEEEEEEeCCchh
Confidence 999999999 5788999999999999999999999999999864 79999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHccccccccc
Q 002982 348 SSEETHNTLKFAHRAKHIEILAA 370 (861)
Q Consensus 348 ~~eETLsTLrFAsRAk~Ikn~~~ 370 (861)
+++|||+||+||+||+.....+.
T Consensus 318 ~~~ETlsTL~fA~ra~~~~~~~~ 340 (344)
T 3dc4_A 318 DLSETLSTLRFGTSAKAAALEHH 340 (344)
T ss_dssp GHHHHHHHHHHHHHHHHHTTTC-
T ss_pred hHHHHHHHHHHHHHHhhcCCCCC
Confidence 99999999999999998865543
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=6.4e-73 Score=671.68 Aligned_cols=297 Identities=34% Similarity=0.541 Sum_probs=232.9
Q ss_pred CCCCeEEEEecC----CCChhhhccCCeEEEecCC--------CEEEe-CC---CCCceeEeeceecCCCCcchhHHHHH
Q 002982 65 SKENVTVTVRFR----PLSPREIRQGEEIAWYADG--------ETILR-NE---DNPSIAYAYDRVFGPTTTTRHVYDIA 128 (861)
Q Consensus 65 ~~~~VkV~VRVR----Pl~~~E~~~g~~~~~~~d~--------~~iv~-~~---~~~~~~F~FD~VF~~~atQeeVY~~~ 128 (861)
..++++|||||| |....|...|..++.+..+ ..+++ .+ ....+.|.||+||+++++|++||+.+
T Consensus 372 il~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~ 451 (715)
T 4h1g_A 372 LKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLRFLFDKIFEREQSNDLVFEEL 451 (715)
T ss_dssp SSCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEETTEEEEEEEECSEEECSSCCHHHHGGGT
T ss_pred HHhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCCCCCCCCeEEEeceEeCCCCCHHHHHHHH
Confidence 468999999999 6666666666654443322 12222 21 22356899999999999999999975
Q ss_pred HHHHHHHhhcCCCeeEEEecccCCCCccccccCC----------------------ccceeeEEEEEEecceeeeccCCC
Q 002982 129 AQHVVSGAMDGINGTIFAYGVTSSGKTHTMHTPN----------------------REFLLRVSYLEIYNEVVNDLLNPA 186 (861)
Q Consensus 129 ~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~g~~----------------------~~f~V~vSylEIYnE~I~DLL~p~ 186 (861)
.|+|+.+|+|||+||||||||||||||||+|+. ..|.|+|||+|||||+|+|||+|.
T Consensus 452 -~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyne~i~DLl~~~ 530 (715)
T 4h1g_A 452 -SQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHPTNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPK 530 (715)
T ss_dssp -HHHHHHHHTTCCEEEEEESSTTSSHHHHHHCTTTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEESSSCC
T ss_pred -HHHHHHHhCCceEEEEccCCCCCchhhccCCCCCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEECCEEEECCCCC
Confidence 589999999999999999999999999998642 358899999999999999999875
Q ss_pred C---CCceeeeCC-CC-eEEcccEEEEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCce
Q 002982 187 G---QNLRIREDS-QG-TFVEGVKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEA 261 (861)
Q Consensus 187 ~---~~L~Ired~-~G-~~V~gLse~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~ 261 (861)
. ..+.++++. .| ++|.||+++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|++.... ...
T Consensus 531 ~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~~~~----~~~ 606 (715)
T 4h1g_A 531 IDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSL----TKE 606 (715)
T ss_dssp CCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEEEEEEETT----TCC
T ss_pred CCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEEEEEEecC----CCC
Confidence 3 356676654 45 89999999999999999999999999999999999999999999999999876432 234
Q ss_pred eeeeeeeeeecCCCCC-ccccccchhhhhhhhcccchHHHHHHHHHHhcCCCCcccCCCCchhhhhhccCCCCccceeEE
Q 002982 262 VNLSQLHLIDLAGSES-SKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLIC 340 (861)
Q Consensus 262 ~~~SkL~LVDLAGSEr-~kt~~~G~rlkEg~~INkSL~aLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIa 340 (861)
...|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|+.++..|||||||||||||||+|||||+|+|||
T Consensus 607 ~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~slggn~~t~~i~ 686 (715)
T 4h1g_A 607 SSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFV 686 (715)
T ss_dssp EEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGTSTTCEEEEEE
T ss_pred EeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhcCCCceEEEEE
Confidence 6789999999999999 578899999999999999999999999999987788999999999999999999999999999
Q ss_pred eeCCCCCChHHHHHHHHHHHHccccc
Q 002982 341 TVTPSSSSSEETHNTLKFAHRAKHIE 366 (861)
Q Consensus 341 ~ISPs~~~~eETLsTLrFAsRAk~Ik 366 (861)
||||+..+++||++||+||+|||+|+
T Consensus 687 ~isp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 687 NISPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp EECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred EECCChhhHHHHHHHHHHHHHhccce
Confidence 99999999999999999999999996
No 29
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.95 E-value=1.9e-29 Score=231.37 Aligned_cols=98 Identities=43% Similarity=0.632 Sum_probs=88.2
Q ss_pred hhhcccchHHHHHHHHHHhcCCCCcccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHHHHHHHHHHcccccccc
Q 002982 290 GSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETHNTLKFAHRAKHIEILA 369 (861)
Q Consensus 290 g~~INkSL~aLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISPs~~~~eETLsTLrFAsRAk~Ikn~~ 369 (861)
+.+||+||++||+||.+|++++..|||||||||||||||+||||++|+|||||||+..+++||++||+||+||+.|+|.|
T Consensus 1 a~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~ 80 (100)
T 2kin_B 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTV 80 (100)
T ss_dssp CCBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcc
Confidence 46899999999999999999877899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHH
Q 002982 370 AQNKLEDGQVKLQSRLEEE 388 (861)
Q Consensus 370 ~~N~l~~~~~~l~~~Le~e 388 (861)
.+|...+.. .+.+++++|
T Consensus 81 ~~n~~~~~~-~l~~~~~~e 98 (100)
T 2kin_B 81 SVNLELTAE-EWKKKYEKE 98 (100)
T ss_dssp CCEEECCHH-HHHHHHHHH
T ss_pred eeccCCCHH-HHHHHHHHh
Confidence 999755443 344455443
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.95 E-value=1.2e-28 Score=232.21 Aligned_cols=113 Identities=42% Similarity=0.573 Sum_probs=103.5
Q ss_pred ccchHHHHHHHHHHhcCCCCcccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHHHHHHHHHHcccccccccccc
Q 002982 294 NKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETHNTLKFAHRAKHIEILAAQNK 373 (861)
Q Consensus 294 NkSL~aLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISPs~~~~eETLsTLrFAsRAk~Ikn~~~~N~ 373 (861)
|+||++||+||.+|++++..|||||||||||||||+|||||+|+|||||||+..+++||++||+||+||+.|+|.|.+|.
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~ 80 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL 80 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence 89999999999999998778999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002982 374 LEDGQVKLQSRLEEEEDAKSALLSRIQRLTKLIL 407 (861)
Q Consensus 374 l~~~~~~l~~~Le~ee~~~~~l~~~iq~L~~~i~ 407 (861)
..+. ..+..+++++.+....|+.+|+.|+..+.
T Consensus 81 ~~~~-~~l~~~~~~e~~~~~~L~~~i~~Le~el~ 113 (117)
T 3kin_B 81 ELTA-EEWKKKYEKEKEKNKALKSVIQHLEVELN 113 (117)
T ss_dssp CCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544 45667788888888899999999987664
No 31
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.9e-23 Score=221.18 Aligned_cols=257 Identities=11% Similarity=0.131 Sum_probs=166.5
Q ss_pred CCCCeEEEEecCCCC-hhhhccCCeEEEecCCCEEEeCCCCCceeEeeceecCCCCcch--hHHHHHHHHHHHHhhc-CC
Q 002982 65 SKENVTVTVRFRPLS-PREIRQGEEIAWYADGETILRNEDNPSIAYAYDRVFGPTTTTR--HVYDIAAQHVVSGAMD-GI 140 (861)
Q Consensus 65 ~~~~VkV~VRVRPl~-~~E~~~g~~~~~~~d~~~iv~~~~~~~~~F~FD~VF~~~atQe--eVY~~~~~plV~~vl~-Gy 140 (861)
.+|+|||||||||.. + +...+.++++. +.++. ..+.|.||+||++...|+ +||+. +.++|+.+++ ||
T Consensus 22 LKGnIRVFcrvrp~~~p-----~~~~v~y~~~~-I~v~~--~~k~f~FDRVf~p~s~Qe~~~vf~E-~~~~i~scLd~Gy 92 (298)
T 2o0a_A 22 QKGTMRCYAYVMEQNLP-----ENLLFDYENGV-ITQGL--SEHVYKFNRVIPHLKVSEDKFFTQE-YSVYHDMCLNQKK 92 (298)
T ss_dssp HHTCCEEEEEECGGGSC-----TTEEEETTTTE-EEETT--TCCEEECSEEEETTTSCHHHHHHHT-THHHHHHHHHTTC
T ss_pred hhCceEEEEEeccccCC-----ccceeecCccc-eeecC--CCceEEeeeEECccccccHHHHHHH-HHHHHHHHHhCCC
Confidence 469999999999965 3 22234455544 33332 337899999999999999 99997 6899999999 99
Q ss_pred CeeEEEecccCCCCccccc----cC-----CccceeeEEEEEEe-cceeeeccCC--CCCCceeeeCCCC-eEEcccEEE
Q 002982 141 NGTIFAYGVTSSGKTHTMH----TP-----NREFLLRVSYLEIY-NEVVNDLLNP--AGQNLRIREDSQG-TFVEGVKEE 207 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~----g~-----~~~f~V~vSylEIY-nE~I~DLL~p--~~~~L~Ired~~G-~~V~gLse~ 207 (861)
|+|||||||||||||.--+ .. ...|.+.++|+||| ||.++|||.. .+..+.|+.+..| ++|.|++.+
T Consensus 93 NvcIfSyGQTGsGKT~ral~q~f~~~~~~~~~~Y~~tlq~veLy~Ne~~~DLL~~~~~~~k~eIk~~~~g~~iv~~s~~i 172 (298)
T 2o0a_A 93 NFNLISLSTTPHGSLRESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDYSHNDKDSIKLKFEKHSISLDSKLV 172 (298)
T ss_dssp CEEEEEECSSCCHHHHHHHHHHHHSTTSHHHHHEEEEEEEEEEECC-CEEETTSCCC------CEEEECSSCEEEESCCE
T ss_pred ceEEEEECCCCCCccHHHHHHHHHHhhhhcccceEEEEEEEEEecCCchHHhcCCCCCCCcceEEecCCCCEEecccEEE
Confidence 9999999999999996532 11 16899999999999 9999999963 2235677776655 799999999
Q ss_pred EecC-HHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeeeeeeeeecCCCCCccccccchh
Q 002982 208 VVLS-PAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGSESSKAETTGVR 286 (861)
Q Consensus 208 ~V~S-~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~SkL~LVDLAGSEr~kt~~~G~r 286 (861)
.|.+ .+|+..++..+.. +..|+ +.-.|+.+.+.......... +....--++|+.+....
T Consensus 173 ~V~~~~edv~~~~~~~~~------~~~~~---~gi~i~k~~~~~~~~~~~~~-~~~~~~d~yf~e~~~~~---------- 232 (298)
T 2o0a_A 173 IIENGLEDLPLNFSCDEH------PNLPH---SGMGIIKVQFFPRDSKSDGN-NDPVPVDFYFIELNNLK---------- 232 (298)
T ss_dssp EESSGGGGSCTTTTCC----------------CEEEEEEEEEEESCC--------CCCEEEEEEEECSHH----------
T ss_pred EccccHHHHHHHhhcccc------cccCC---CCceEEEEEEecCccccccc-CCCCceEEEEEEeCCHH----------
Confidence 9999 8998887732221 12222 23556666665421111111 01112346777765321
Q ss_pred hhhhhhcccchHHHHHHHHHHhcCCCCcccCCCCchhhhhhccCCCCccceeEEeeCCCCCChHHHHHHHHHHHHccccc
Q 002982 287 RKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETHNTLKFAHRAKHIE 366 (861)
Q Consensus 287 lkEg~~INkSL~aLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISPs~~~~eETLsTLrFAsRAk~Ik 366 (861)
+...|.+.+ ..+ -+-.|+++-+|+.-|. ..+.++++++.-.. +.-.-|..+++..+++
T Consensus 233 ---------~~~~l~~~~---~~~-----~~~~spi~~il~~ll~-~tks~~~~~l~~~~----~~~~lL~~s~~i~~~~ 290 (298)
T 2o0a_A 233 ---------SIEQFDKSI---FKK-----ESCETPIALVLKKLIS-DTKSFFLLNLNDSK----NVNKLLTISEEVQTQL 290 (298)
T ss_dssp ---------HHHHHHHHH---HTC------CCCSHHHHHHHHHHH-HSBCEEEEEECCGG----GHHHHHHHHHHHHHHT
T ss_pred ---------HHHHHHhhc---ccc-----cccCCcHHHHHHHHHh-cCcceEEEEecCCC----chhHHHHHHHHhhccc
Confidence 122333322 222 3556888989987774 57889999997643 2334788888888887
Q ss_pred cccccc
Q 002982 367 ILAAQN 372 (861)
Q Consensus 367 n~~~~N 372 (861)
|....+
T Consensus 291 ~~~~~~ 296 (298)
T 2o0a_A 291 CKRKKK 296 (298)
T ss_dssp C-----
T ss_pred Cccccc
Confidence 765544
No 32
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.74 E-value=0.011 Score=74.28 Aligned_cols=35 Identities=29% Similarity=0.474 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHh-hcCCCeeEEEecccCCCCcccc
Q 002982 123 HVYDIAAQHVVSGA-MDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 123 eVY~~~~~plV~~v-l~GyN~tIfAYGqTGSGKTyTM 158 (861)
.||..+ ......+ -.+.|.||+..|.+|+|||.+.
T Consensus 151 Hi~aia-~~ay~~m~~~~~~Q~i~isGeSGaGKTe~~ 186 (1184)
T 1i84_S 151 HIYAIA-DTAYRSMLQDREDQSILCTGESGAGKTENT 186 (1184)
T ss_dssp CHHHHH-HHHHHHHHHHTCCEEEECCCSTTSSTTHHH
T ss_pred cHhhhH-HHHHHHHHhcCCCcEEEEecCCCCCccHHH
Confidence 566533 2233333 3699999999999999999875
No 33
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.00 E-value=0.056 Score=68.06 Aligned_cols=15 Identities=40% Similarity=0.483 Sum_probs=11.5
Q ss_pred eeeeeeecCCCCCcc
Q 002982 265 SQLHLIDLAGSESSK 279 (861)
Q Consensus 265 SkL~LVDLAGSEr~k 279 (861)
.-|-++|.+|.|...
T Consensus 458 ~~IgvLDi~GFE~f~ 472 (1184)
T 1i84_S 458 SFLGILDIAGFEIFE 472 (1184)
T ss_dssp EEEEEEECCCCCCCS
T ss_pred ceEEEeecCCcCCCC
Confidence 457789999999644
No 34
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.54 E-value=0.34 Score=60.57 Aligned_cols=35 Identities=26% Similarity=0.430 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHh-hcCCCeeEEEecccCCCCcccc
Q 002982 123 HVYDIAAQHVVSGA-MDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 123 eVY~~~~~plV~~v-l~GyN~tIfAYGqTGSGKTyTM 158 (861)
.||..+ ......+ -.+.|-||+.-|.+|+|||.+.
T Consensus 138 HifaiA-~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 173 (1080)
T 2dfs_A 138 HIFAVA-EEAYKQMARDERNQSIIVSGESGAGKTVSA 173 (1080)
T ss_dssp CHHHHH-HHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred cHHHHH-HHHHHHHHhcCCCcEEEEcCCCCCCccchH
Confidence 466532 2233333 3699999999999999999875
No 35
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.13 E-value=0.15 Score=63.75 Aligned_cols=55 Identities=18% Similarity=0.232 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHh
Q 002982 682 QVQAAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAA 753 (861)
Q Consensus 682 ~~q~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~~ 753 (861)
.....||++|+.+..++..++..|+.++++|.+ .|.+.|..|..+|++|...+..
T Consensus 987 ~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~-----------------~L~~kv~~L~~e~~~L~qq~~~ 1041 (1080)
T 2dfs_A 987 LSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH-----------------ETEQLVSELKEQNTLLKTEKEE 1041 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777666666653 4457777777777777766653
No 36
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=93.52 E-value=6.4 Score=38.93 Aligned_cols=27 Identities=11% Similarity=0.133 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002982 557 LQVEIKKLRDEIKGKNDQIALLEKQIA 583 (861)
Q Consensus 557 ~~~~~~~l~~ei~~k~~qi~~le~~i~ 583 (861)
|+..|..++.+|.....++..|+..+.
T Consensus 4 ~~~~~~~l~~~~~~~~~~~~~l~~~l~ 30 (284)
T 1c1g_A 4 IKKKMQMLKLDKENALDRADEAEADKK 30 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 445566666666666666666665554
No 37
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.52 E-value=0.019 Score=55.49 Aligned_cols=51 Identities=14% Similarity=0.044 Sum_probs=36.4
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.++||........|+.+++ .+..++.++--.-...++-||++|+|||+.+.
T Consensus 6 ~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALL-TIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHH-HHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred hCccccccCCCHHHHHHHH-HHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 4688887666667888886 44566665543334567889999999999985
No 38
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.56 E-value=0.04 Score=54.01 Aligned_cols=51 Identities=16% Similarity=0.093 Sum_probs=34.7
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHHHhhcCCC-eeEEEecccCCCCccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGIN-GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN-~tIfAYGqTGSGKTyTM~ 159 (861)
.++||.+......+..+++. +..++...-.++. ..|+-||++|+|||+.+.
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRF-AERFVAEYEPGKKMKGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHH-HHHHHHHCCSSCCCCEEEEECSTTSSHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHH-HHHHHHHhhhccCCCeEEEECCCCCCHHHHHH
Confidence 46788766555566667773 3445554433322 678899999999999875
No 39
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.38 E-value=0.067 Score=57.25 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=34.4
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.++||.+......+..++. .+..++...-.+....|+-||++|+||||.+.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~-~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHH-HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHH
T ss_pred hCCHhhCcCCChHHHHHHH-HHHHHHHhccccCCceEEEECCCCCCHHHHHH
Confidence 3677765544435556666 44556665444445678889999999999985
No 40
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=89.16 E-value=9.6 Score=39.69 Aligned_cols=121 Identities=14% Similarity=0.107 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcCCCccccccc
Q 002982 686 AEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKSSPTQRRTSA 765 (861)
Q Consensus 686 ~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~~~~~~~~~~~~~~ 765 (861)
.+|..|+.+...|-.+-..|+..-..|.....-++.-...+--+++.+-.+|..+...=.+..+.|..+++.
T Consensus 18 ~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~-------- 89 (256)
T 3na7_A 18 KEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSE-------- 89 (256)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSS--------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH--------
Confidence 355555555555544444444444444444433444344444444444444444444444444444433310
Q ss_pred ccCCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHH
Q 002982 766 VRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESKKREAYLE 830 (861)
Q Consensus 766 ~~~~r~~~~~~~~~~~~~~~~~~~el~~~~~re~~le~~l~ek~~~e~el~~~~ee~k~~e~~le 830 (861)
.....|.+|+..-+.|-..||.-+.+-..+-++++..+++.+.+-+.++
T Consensus 90 ----------------kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~ 138 (256)
T 3na7_A 90 ----------------RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELE 138 (256)
T ss_dssp ----------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0345566666666655555555555544444444444444444333333
No 41
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=88.25 E-value=0.22 Score=52.62 Aligned_cols=49 Identities=14% Similarity=0.110 Sum_probs=33.1
Q ss_pred eceecCCCCcchhHHHHHHHHHHHHhhcCCC----eeEEEecccCCCCccccc
Q 002982 111 YDRVFGPTTTTRHVYDIAAQHVVSGAMDGIN----GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 111 FD~VF~~~atQeeVY~~~~~plV~~vl~GyN----~tIfAYGqTGSGKTyTM~ 159 (861)
||.+|+...--..+.+.++..++...+...+ ..|+-||++|+|||+...
T Consensus 2 ~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 2 LDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp CCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHHH
T ss_pred cccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 4555544444456667777777777654222 367889999999999875
No 42
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=87.94 E-value=22 Score=35.01 Aligned_cols=18 Identities=0% Similarity=-0.130 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHHhhhhhh
Q 002982 518 DQIDLLREQQKILAGEVA 535 (861)
Q Consensus 518 d~~dllreq~k~l~geva 535 (861)
+++|-+..+..-|..+++
T Consensus 13 ~~~~~~~~~~~~l~~~l~ 30 (284)
T 1c1g_A 13 LDKENALDRADEAEADKK 30 (284)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 43
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=85.46 E-value=0.4 Score=44.88 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=23.3
Q ss_pred HHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 129 AQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 129 ~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
+..++..+..+....|+-||++|+|||+.+.
T Consensus 31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHHH
Confidence 3444555555666788999999999999874
No 44
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=85.29 E-value=0.28 Score=50.28 Aligned_cols=46 Identities=20% Similarity=0.249 Sum_probs=22.7
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.|+||.+.+.+..-..+.+. +..+. ..+..|+-||++|+|||+...
T Consensus 2 ~~~f~~~ig~~~~~~~~~~~-----~~~~~-~~~~~vll~G~~GtGKt~la~ 47 (265)
T 2bjv_A 2 AEYKDNLLGEANSFLEVLEQ-----VSHLA-PLDKPVLIIGERGTGKELIAS 47 (265)
T ss_dssp --------CCCHHHHHHHHH-----HHHHT-TSCSCEEEECCTTSCHHHHHH
T ss_pred CcccccceeCCHHHHHHHHH-----HHHHh-CCCCCEEEECCCCCcHHHHHH
Confidence 37899887654333333322 22222 234678889999999999864
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.68 E-value=9.6 Score=43.59 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=11.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhhhHHHH
Q 002982 801 YEAALLEKDQQEAELQRKVEESKKREAYL 829 (861)
Q Consensus 801 le~~l~ek~~~e~el~~~~ee~k~~e~~l 829 (861)
+|..+.+..++-.|+++.++..++.=..|
T Consensus 549 le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 549 LEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443333333
No 46
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=83.61 E-value=0.36 Score=52.74 Aligned_cols=52 Identities=15% Similarity=0.266 Sum_probs=33.2
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHH-Hhhc---CCCeeEEEecccCCCCccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVS-GAMD---GINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~-~vl~---GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.+.||.+.+.+.--+.+.+.+..++.. .++. .-...|+-||++|+|||+...
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHH
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHH
Confidence 467888887655444455544444431 1112 223578999999999999875
No 47
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=83.53 E-value=0.51 Score=49.84 Aligned_cols=49 Identities=22% Similarity=0.488 Sum_probs=30.2
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.|+||.++.. ..+...+.. +..++..-- +....|+-||++|+|||+.+.
T Consensus 7 ~~~f~~fv~g-~~~~~a~~~-~~~~~~~~~-~~~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 7 KYTLENFIVG-EGNRLAYEV-VKEALENLG-SLYNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp TCCSSSCCCC-TTTHHHHHH-HHHHHHTTT-TSCSSEEEECSSSSSHHHHHH
T ss_pred CCCcccCCCC-CcHHHHHHH-HHHHHhCcC-CCCCeEEEECCCCCcHHHHHH
Confidence 4789876632 234444543 333443321 133568889999999999985
No 48
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=83.53 E-value=0.47 Score=44.58 Aligned_cols=30 Identities=13% Similarity=0.130 Sum_probs=22.9
Q ss_pred HHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 130 QHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 130 ~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
..++..+..+....|+-||++|+|||+.+.
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHHH
Confidence 344555555667788999999999999874
No 49
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=83.52 E-value=0.34 Score=49.50 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=32.6
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHH-----HHhhcCCCeeEEEecccCCCCccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVV-----SGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV-----~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.+.||.+.+.+...+.+.+.+ ..+- ..+-......|+-||++|+|||+.+.
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIV-DFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHH-HHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHH-HHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHH
Confidence 478899888877666665532 2211 11111233458899999999999985
No 50
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=82.22 E-value=0.36 Score=49.69 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=33.5
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHH-----HhhcCCCeeEEEecccCCCCccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVS-----GAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~-----~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.|.||.+.+.+..-+.+.+.+..++.. ..--.....|+-||++|+|||+.+.
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 478888887665555555544433222 1111344568899999999999885
No 51
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=81.90 E-value=0.44 Score=50.28 Aligned_cols=44 Identities=16% Similarity=0.382 Sum_probs=29.0
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.|+||.+++.+ .+... +...++.+..+.|+-||++|+|||+...
T Consensus 20 ~~~f~~i~G~~----~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 20 VFPFSAIVGQE----DMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp CCCGGGSCSCH----HHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHHH
T ss_pred CCCchhccChH----HHHHH----HHHHhhCCCCceEEEECCCCccHHHHHH
Confidence 47899887653 33332 2223344444569999999999999874
No 52
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=81.70 E-value=0.45 Score=51.62 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=21.7
Q ss_pred HHhhcCCCeeEEEecccCCCCccccc
Q 002982 134 SGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
..+-.|...+|+-||++|+|||.++.
T Consensus 38 ~~i~~~~~~~lli~GpPGTGKT~~v~ 63 (318)
T 3te6_A 38 DSLMSSQNKLFYITNADDSTKFQLVN 63 (318)
T ss_dssp HHHHTTCCCEEEEECCCSHHHHHHHH
T ss_pred HHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 33446788899999999999999985
No 53
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=81.43 E-value=11 Score=43.03 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhc
Q 002982 556 QLQVEIKKLRDEIKGKNDQIALLEKQIADSIMT 588 (861)
Q Consensus 556 ~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~ 588 (861)
+++.+|+.|+.++......+..+++.|-+-...
T Consensus 460 ~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~ 492 (597)
T 3oja_B 460 ELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRR 492 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 344566666666666666666666665554443
No 54
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=81.35 E-value=0.51 Score=47.93 Aligned_cols=51 Identities=14% Similarity=0.275 Sum_probs=29.5
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHH-HHhhcCC----CeeEEEecccCCCCccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVV-SGAMDGI----NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV-~~vl~Gy----N~tIfAYGqTGSGKTyTM~ 159 (861)
.++||.|.+.+.....+.+ +...+- ..++.++ ...|+-||++|+|||+.+.
T Consensus 12 ~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHH
Confidence 4789988876543333332 221110 0122222 2238999999999999885
No 55
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=81.23 E-value=0.49 Score=49.89 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=33.7
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHH-Hhhc----CCCeeEEEecccCCCCccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVS-GAMD----GINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~-~vl~----GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.++||.|.+.+..-+.+.+.+..|+.. ..+. .....|+-||++|+|||+.+.
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHH
Confidence 367888887665555666555544321 1111 234568899999999999875
No 56
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=81.12 E-value=4.8 Score=43.78 Aligned_cols=236 Identities=12% Similarity=0.170 Sum_probs=123.0
Q ss_pred CCCCeEEEEecCCCChhhhccCCeEEEecCCCEEEeCCCCCceeEeeceecCCCC-cchhHHHHHHHHHHHHhh-cCCCe
Q 002982 65 SKENVTVTVRFRPLSPREIRQGEEIAWYADGETILRNEDNPSIAYAYDRVFGPTT-TTRHVYDIAAQHVVSGAM-DGING 142 (861)
Q Consensus 65 ~~~~VkV~VRVRPl~~~E~~~g~~~~~~~d~~~iv~~~~~~~~~F~FD~VF~~~a-tQeeVY~~~~~plV~~vl-~GyN~ 142 (861)
.+|.||+|+=+-+-.. +..+.+.-...+|. .......|.|++|++... +-.+++..-.+..++-++ .+.|+
T Consensus 57 lKG~IRcFAYi~~~~~-----p~~~~idY~~~~It--~~~~~~~y~FnRiIp~~~~~e~~~l~qE~q~y~DmcL~~~~Nf 129 (333)
T 4etp_B 57 QKGTMRVYAYVMEQNL-----PENLLFDYENGVIT--QGLSEHVYKFNRVIPHLKVSEDCFFTQEYSVYHDMALNQKKNF 129 (333)
T ss_dssp HHTCCEEEEEECCSSC-----CSSCEEETTTTEEE--C--CCCEEECSEEEETTTCCHHHHHHHTTHHHHHHHHHTTCCE
T ss_pred hcCcEEEEEEECcccC-----CccEEEecccceEe--ecCCcceEEEeeeechhhcchHHHHHHHHHHHHHHHHccCCCe
Confidence 3688888888766221 22233333333443 223456899999997665 344555556788999888 89999
Q ss_pred eEEEecccCCCCcc-----ccccC----CccceeeEEEEEEecce-eeeccCCCC----C--CceeeeCCCCeEEcccEE
Q 002982 143 TIFAYGVTSSGKTH-----TMHTP----NREFLLRVSYLEIYNEV-VNDLLNPAG----Q--NLRIREDSQGTFVEGVKE 206 (861)
Q Consensus 143 tIfAYGqTGSGKTy-----TM~g~----~~~f~V~vSylEIYnE~-I~DLL~p~~----~--~L~Ired~~G~~V~gLse 206 (861)
.||..|..--+... .|... ...|.+.+-|+.+-++. ..|||.+.. . .|.+.++. +-+ +-..
T Consensus 130 slIsis~~~w~~Lr~~lL~fi~~k~~~Y~~~y~i~lQ~V~Lse~~~S~DlL~~~~~~~~~~I~lkiee~s--I~l-dS~~ 206 (333)
T 4etp_B 130 NLISLSTTPHGSLRESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDYSHNDKDSIKLKFEKHS--ISL-DSKL 206 (333)
T ss_dssp EEEEEESSCCCHHHHHHHHHHHSTTCHHHHHEEEEEEEEECCSSSCCEESSCC----------CEEETTE--EEC-CSCC
T ss_pred eEEEecCCCcHHHHHHHHHHHHhcccccccceEEEEEEEEEcCCCchhhhhccccccCCCCceEEeecce--Eee-cceE
Confidence 99999987332211 11133 46789999998888776 799998752 2 24444432 111 1122
Q ss_pred EEecCHHHHHHHHHHhHhccccccccCCCCCCCceEEEEEEEEeccCCCCCCCceeeeeeeeeeecCCCCCccccccchh
Q 002982 207 EVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSAGEAVNLSQLHLIDLAGSESSKAETTGVR 286 (861)
Q Consensus 207 ~~V~S~ee~~~lL~~G~~~R~~asT~~N~~SSRSH~IftI~Veq~~~~~~~~~~~~~~SkL~LVDLAGSEr~kt~~~G~r 286 (861)
+.+.+..+.+.++.. ..+..+. -...-.|+.+.+.....+.+ +......-.++||.+-+..
T Consensus 207 i~i~~~~~~l~~~~k-------l~~~~~~-~~~GI~IlKfqf~~~~~~~~-~n~~~~~~~fYFiEi~~~~---------- 267 (333)
T 4etp_B 207 VIIENGLEDLPLNFS-------ADEHPNL-PHSGMGIIKVQFFPRDSKSD-GNNDPVPVDFYFIELNNLK---------- 267 (333)
T ss_dssp EEESSGGGGSCTTSS-------CCC---------CEEEEEEEEECC---------CCCEEEEEEEECSHH----------
T ss_pred EEeccccccchhhhc-------cccCCCC-CCCCceEEEEEEEecCcccc-cccCCcceeEEEEEecChh----------
Confidence 333332221111100 0000011 11234466666665432211 1111223468899887543
Q ss_pred hhhhhhcccchHHHHHHHHHHhcCCCCcccCCCCchhhhhhccCCCCccceeEEeeCCCCC
Q 002982 287 RKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSS 347 (861)
Q Consensus 287 lkEg~~INkSL~aLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIa~ISPs~~ 347 (861)
.+..|.++|.. + -.-.|+++-+|+--|. ..+.++|+++.-...
T Consensus 268 ---------ti~~l~~~i~~---~-----~~~~spi~~ilkkLl~-~TKS~flfnl~~~~~ 310 (333)
T 4etp_B 268 ---------SIEQFDKSIFK---K-----ESAETPIALVLKKLIS-DTKSFFLLNLNDSKN 310 (333)
T ss_dssp ---------HHHHHHSCC------------CCCCHHHHHHHHHHH-HSBCEEEEEECCSTT
T ss_pred ---------HHHHHHhhcCc---c-----cccCCCHHHHHHHHHh-hCcceEEEEcCCcch
Confidence 12233333321 1 1334667777776663 568899999976543
No 57
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=80.74 E-value=4.6 Score=34.69 Aligned_cols=59 Identities=27% Similarity=0.354 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccCcccccccccchhhhHHHHHHhHHhhhhhHHHHHHHHHH
Q 002982 557 LQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQVKAADNRIIQEQLNQKICECEGLQETIGFLKQ 632 (861)
Q Consensus 557 ~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~ik~adnrilqeql~~k~~e~~elqe~v~~l~q 632 (861)
....++.|+.|.++|-++|+.|+-.|. ||+-|---|-+.|=.=+-||+-||++...|++
T Consensus 16 ~~~~l~~Lr~eL~~Ke~eI~~L~e~i~-----------------lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 16 LLNTLAILQKELKSKEQEIRRLKEVIA-----------------LKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 334788999999999999999998765 56666666667777778899999998888876
No 58
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=80.24 E-value=0.88 Score=44.65 Aligned_cols=45 Identities=18% Similarity=0.351 Sum_probs=27.6
Q ss_pred EeeceecCCCCcchhHHHHHHHHHHHHhh-cCCCeeEEEecccCCCCccccc
Q 002982 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAM-DGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~~vl-~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
++||.+++. ..+..++.. +..++ .+....|+-||++|+|||+.+.
T Consensus 25 ~~~~~~~~~-~~~~~~~~~-----l~~~~~~~~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 25 ETFTSYYPA-AGNDELIGA-----LKSAASGDGVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp CSTTTSCC---CCHHHHHH-----HHHHHHTCSCSEEEEECSTTSSHHHHHH
T ss_pred CChhhccCC-CCCHHHHHH-----HHHHHhCCCCCeEEEECCCCCCHHHHHH
Confidence 567665552 223444442 22222 3356778899999999999875
No 59
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=79.83 E-value=0.52 Score=49.93 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=24.8
Q ss_pred cchhHHHHHHHHHHHHhh-cCCCeeEEEecccCCCCccccc
Q 002982 120 TTRHVYDIAAQHVVSGAM-DGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 120 tQeeVY~~~~~plV~~vl-~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.++...+.+.. .+..++ .+...+|+-||++|+|||+.+.
T Consensus 23 gr~~~~~~l~~-~l~~~~~~~~~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 23 HREAELRRLAE-VLAPALRGEKPSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp TCHHHHHHHHH-TTGGGTSSCCCCCEEECBCTTSSHHHHHH
T ss_pred CHHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence 34444443322 233333 3556689999999999999885
No 60
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=79.76 E-value=2.4 Score=38.17 Aligned_cols=86 Identities=26% Similarity=0.325 Sum_probs=63.3
Q ss_pred HhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcCCCcccccccccCCcccccccccC
Q 002982 700 EAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKSSPTQRRTSAVRNGRRDGQIKRQN 779 (861)
Q Consensus 700 e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 779 (861)
.||.++..-|-+|| +| =+.|--|-.||..|..++...+... .+
T Consensus 6 ~EKe~mq~LNdRlA---sy---------------IdKVR~LEqqN~~Le~~i~~l~~~~---------------~~---- 48 (93)
T 3s4r_A 6 NEKVELQELNDRFA---NL---------------IDKVRFLEQQNKILLAELEQLKGQG---------------KS---- 48 (93)
T ss_dssp CCCCCHHHHHHHHH---HH---------------HHHHHHHHHHHHHHHHHHHHHHHHH---------------HH----
T ss_pred HHHHHHHHHHHHHH---HH---------------HHHHHHHHHHHHHHHHHHHHHhhcc---------------CC----
Confidence 46667777776663 22 3679999999999999987665210 00
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHhhh
Q 002982 780 QDGSSLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESKKREAYLENELANMWVLVAKLKK 845 (861)
Q Consensus 780 ~~~~~~~~~~el~~~~~re~~le~~l~ek~~~e~el~~~~ee~k~~e~~lenelanmwvlvaklkk 845 (861)
. + ...||+.+ .+|+++|++...--+-|+-|+.|||..|..+|+
T Consensus 49 ------~----~------~~~ye~~i-------~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 49 ------R----L------GDLYEEEM-------RELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp ------H----H------HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------C----c------HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 0 12355553 589999999999999999999999999999985
No 61
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=79.31 E-value=0.55 Score=48.66 Aligned_cols=52 Identities=13% Similarity=0.258 Sum_probs=34.1
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHH-HhhcC---CCeeEEEecccCCCCccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVS-GAMDG---INGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~-~vl~G---yN~tIfAYGqTGSGKTyTM~ 159 (861)
...||.+.+.+..-+.+.+.+..|+.. .++.| ....|+-||++|+|||+.+.
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHH
Confidence 367888887655555555555444432 12222 35678999999999999875
No 62
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.03 E-value=1.2 Score=50.33 Aligned_cols=51 Identities=22% Similarity=0.374 Sum_probs=35.9
Q ss_pred EeeceecCCCCcchhHHHHHHHHHHH-Hhhc--CC--CeeEEEecccCCCCccccc
Q 002982 109 YAYDRVFGPTTTTRHVYDIAAQHVVS-GAMD--GI--NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~-~vl~--Gy--N~tIfAYGqTGSGKTyTM~ 159 (861)
.+||.|-+-+..-+++.+.+.-|+.. ..+. |. ...|+-||++|+|||++..
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHH
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHH
Confidence 56888877666556677766666653 3343 22 3568899999999999875
No 63
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=77.40 E-value=1.4 Score=45.21 Aligned_cols=22 Identities=23% Similarity=0.123 Sum_probs=19.1
Q ss_pred cCCCeeEEEecccCCCCccccc
Q 002982 138 DGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 138 ~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
......|+-||++|+|||+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHH
Confidence 5667789999999999999875
No 64
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=77.27 E-value=0.62 Score=50.46 Aligned_cols=52 Identities=15% Similarity=0.264 Sum_probs=33.7
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHHHh----hcCCCeeEEEecccCCCCccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGA----MDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~v----l~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
...||.+++.+..-+.+.+.+..|+...- +.+....|+-||++|+|||+...
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHH
Confidence 35788887755444455554444433211 23456679999999999999875
No 65
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=76.97 E-value=0.48 Score=47.79 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=17.4
Q ss_pred CCCeeEEEecccCCCCccccc
Q 002982 139 GINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 139 GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.....|+-||++|+|||+...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHH
Confidence 344568999999999999875
No 66
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=75.74 E-value=33 Score=47.73 Aligned_cols=54 Identities=7% Similarity=0.066 Sum_probs=43.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhH
Q 002982 783 SSLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESKKREAYLENELANM 836 (861)
Q Consensus 783 ~~~~~~~el~~~~~re~~le~~l~ek~~~e~el~~~~ee~k~~e~~lenelanm 836 (861)
.+.++..+|.+..++=.+.++.|.+.+..=++|+.+.+++...-+.||+|+..+
T Consensus 2015 ~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~ 2068 (3245)
T 3vkg_A 2015 EVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKV 2068 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677788877777788888888888888888888888888888888887754
No 67
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=75.37 E-value=0.46 Score=49.23 Aligned_cols=51 Identities=16% Similarity=0.307 Sum_probs=29.2
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHH-HHhhcCC----CeeEEEecccCCCCccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVV-SGAMDGI----NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV-~~vl~Gy----N~tIfAYGqTGSGKTyTM~ 159 (861)
.++||.|.+.+.....+.+. ...+- ..++.++ ...|+-||++|+|||+.+.
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l-~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEI-VEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHH-HHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHH-HHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHH
Confidence 47888887765443333322 11110 1122222 2238899999999999875
No 68
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=75.29 E-value=1.3 Score=42.39 Aligned_cols=22 Identities=23% Similarity=0.147 Sum_probs=17.2
Q ss_pred cCCCeeEEEecccCCCCccccc
Q 002982 138 DGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 138 ~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.+-...|+-||++|+|||+.+.
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~~ 56 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATAI 56 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 3433459999999999999874
No 69
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=75.15 E-value=0.92 Score=48.54 Aligned_cols=51 Identities=14% Similarity=0.174 Sum_probs=33.9
Q ss_pred EeeceecCCCCcchhHHHHHHHHHHH-HhhcCC---CeeEEEecccCCCCccccc
Q 002982 109 YAYDRVFGPTTTTRHVYDIAAQHVVS-GAMDGI---NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~-~vl~Gy---N~tIfAYGqTGSGKTyTM~ 159 (861)
.+||.|.+.+..-+.+.+.+..|+-. .++.|. ...|+-||++|+|||+...
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHH
Confidence 57888877655555555555555442 344442 2468889999999999875
No 70
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=75.11 E-value=1 Score=42.85 Aligned_cols=18 Identities=28% Similarity=0.671 Sum_probs=15.4
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..++-||++|+|||+.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp SEEEEESSSTTTTCHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 457779999999999985
No 71
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=74.92 E-value=1.4 Score=42.83 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=18.1
Q ss_pred HHHhhcCCCeeEEEecccCCCCccccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
+..++.|.| ++..++||||||.+..
T Consensus 34 i~~~~~~~~--~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 34 IPIALSGRD--ILARAKNGTGKSGAYL 58 (206)
T ss_dssp HHHHHTTCC--EEEECCSSSTTHHHHH
T ss_pred HHHHccCCC--EEEECCCCCchHHHHH
Confidence 344567765 5678999999997653
No 72
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=74.91 E-value=1.1 Score=50.12 Aligned_cols=48 Identities=27% Similarity=0.465 Sum_probs=28.5
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.|+||...... .+...+. .+..++.. .|....+|-||++|+|||+.+.
T Consensus 101 ~~tfd~fv~g~-~n~~a~~-~~~~~a~~--~~~~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 101 DYTFENFVVGP-GNSFAYH-AALEVAKH--PGRYNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp TCSGGGCCCCT-TTHHHHH-HHHHHHHS--TTSSCCEEEECSSSSSHHHHHH
T ss_pred CCChhhcCCCC-chHHHHH-HHHHHHhC--CCCCCeEEEECCCCCCHHHHHH
Confidence 58888755322 2333443 22333332 1213467889999999999985
No 73
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=74.58 E-value=1.2 Score=43.95 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=18.5
Q ss_pred HHHhhcCCCeeEEEecccCCCCcccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
+..++.|.| ++..++||||||.+.
T Consensus 45 i~~~~~~~~--~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 45 IMPIIEGHD--VLAQAQSGTGKTGTF 68 (224)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEECCCCCcHHHHH
Confidence 344567766 678899999999884
No 74
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=74.06 E-value=73 Score=33.01 Aligned_cols=28 Identities=7% Similarity=0.230 Sum_probs=18.7
Q ss_pred HHHHHHhHHhhhhhHHHHHHHHHHHHHH
Q 002982 609 IQEQLNQKICECEGLQETIGFLKQQLND 636 (861)
Q Consensus 609 lqeql~~k~~e~~elqe~v~~l~qql~~ 636 (861)
++.++...-.++.+++..+...++||..
T Consensus 58 ~~~~~~~~e~~i~~~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 58 LKLQVSKNEQTLQDTNAKIASIQKKMSE 85 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445555666777777788888877744
No 75
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=73.71 E-value=1.8 Score=46.06 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=20.2
Q ss_pred HHHHhhcCCC-e--eEEEecccCCCCccccc
Q 002982 132 VVSGAMDGIN-G--TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 132 lV~~vl~GyN-~--tIfAYGqTGSGKTyTM~ 159 (861)
.+..++.|.. . +++-||++|+|||+++.
T Consensus 32 ~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 32 LLGNWLRNPGHHYPRATLLGRPGTGKTVTLR 62 (389)
T ss_dssp HHHHHHHSTTSSCCEEEEECCTTSSHHHHHH
T ss_pred HHHHHHcCCCCCCCeEEEECCCCCCHHHHHH
Confidence 3444444433 4 68899999999999985
No 76
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.57 E-value=1.1 Score=50.64 Aligned_cols=92 Identities=17% Similarity=0.202 Sum_probs=54.1
Q ss_pred CeEEEEecCCCChhh-hccCCeEEEecCCCEEEe---CCCC---------CceeEeeceecCCCCcchhHHHHHHHHHHH
Q 002982 68 NVTVTVRFRPLSPRE-IRQGEEIAWYADGETILR---NEDN---------PSIAYAYDRVFGPTTTTRHVYDIAAQHVVS 134 (861)
Q Consensus 68 ~VkV~VRVRPl~~~E-~~~g~~~~~~~d~~~iv~---~~~~---------~~~~F~FD~VF~~~atQeeVY~~~~~plV~ 134 (861)
....+|++..+...+ +..|..+....+...++. .... ..-.-+||.|-+-+..-+++.+.+..|+..
T Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~ 203 (434)
T 4b4t_M 124 RQTVFLPMVGLVDPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKR 203 (434)
T ss_dssp SCEEEEECCSSSCTTTSCSSEEEEECSSSCSEEEEEEESSSCSCSCCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHC
T ss_pred CCeEEEecccccCHhHCCCCCEEeEcCcchhhheecCcccCchhhhcccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhC
Confidence 345566666655444 334444544444333321 0000 011357888887776667777777777763
Q ss_pred -Hhhc--C--CCeeEEEecccCCCCccccc
Q 002982 135 -GAMD--G--INGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 135 -~vl~--G--yN~tIfAYGqTGSGKTyTM~ 159 (861)
..+. | +...|+-||++|+|||++..
T Consensus 204 pe~f~~~g~~~prGvLLyGPPGTGKTllAk 233 (434)
T 4b4t_M 204 ADKFKDMGIRAPKGALMYGPPGTGKTLLAR 233 (434)
T ss_dssp SHHHHHHCCCCCCEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCCCCCCeeEEECcCCCCHHHHHH
Confidence 3333 3 23568889999999998875
No 77
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=73.36 E-value=0.72 Score=46.90 Aligned_cols=51 Identities=16% Similarity=0.239 Sum_probs=30.4
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHH-Hhhc----CCCeeEEEecccCCCCccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVS-GAMD----GINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~-~vl~----GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.+.||.+.+.+..-+.+.+. +..+.. ..+. .....|+-||++|+|||+.+.
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAEL-VEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHH-HHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHH-HHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHH
Confidence 46788888765544444432 222211 1111 234468999999999999875
No 78
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=73.10 E-value=1.4 Score=42.70 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=17.6
Q ss_pred HHhhcCCCeeEEEecccCCCCcccc
Q 002982 134 SGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
..++.|.+ ++..++||||||.+.
T Consensus 33 ~~~~~~~~--~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 33 PLALEGKD--LIGQARTGTGKTLAF 55 (207)
T ss_dssp HHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHcCCCC--EEEECCCCChHHHHH
Confidence 44567765 667789999999874
No 79
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=72.65 E-value=1.1 Score=46.35 Aligned_cols=21 Identities=19% Similarity=0.056 Sum_probs=17.2
Q ss_pred CCCeeEEEecccCCCCccccc
Q 002982 139 GINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 139 GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.....|+-||++|+|||+...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHH
Confidence 344568999999999999874
No 80
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=71.86 E-value=3.5 Score=36.43 Aligned_cols=32 Identities=38% Similarity=0.495 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhHHhHhhhh-------hhhhhchhhhh
Q 002982 684 QAAEIEELNRKVTELTEAKEQ-------LELRNQKLSEE 715 (861)
Q Consensus 684 q~~e~e~lk~~~~~l~e~k~~-------l~~~n~kl~ee 715 (861)
.+-||++||.+...|.+++.. |+..|++|-+|
T Consensus 25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E 63 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 456888888888888877776 66666666665
No 81
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.38 E-value=2 Score=48.35 Aligned_cols=51 Identities=22% Similarity=0.367 Sum_probs=34.6
Q ss_pred EeeceecCCCCcchhHHHHHHHHHHH-Hhhc--CC--CeeEEEecccCCCCccccc
Q 002982 109 YAYDRVFGPTTTTRHVYDIAAQHVVS-GAMD--GI--NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~-~vl~--Gy--N~tIfAYGqTGSGKTyTM~ 159 (861)
-+||-|-|-+.--+.+.+.+..|+.. ..+. |. .-.|+-||++|+|||+...
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHH
Confidence 56777777665556666666666643 2333 32 3458999999999999875
No 82
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=70.22 E-value=1.9 Score=45.86 Aligned_cols=47 Identities=21% Similarity=0.186 Sum_probs=30.7
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHHHhhcCCCe--eEEEecccCCCCccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGING--TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~--tIfAYGqTGSGKTyTM~ 159 (861)
.+.||.+++. +.+.. .+..++..+..|... .|+-||++|+|||+...
T Consensus 40 ~~~~~~ivG~----~~~~~-~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 40 RQASQGMVGQ----LAARR-AAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CSEETTEESC----HHHHH-HHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHH
T ss_pred CcchhhccCh----HHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHH
Confidence 3567777764 33332 223445555556553 78899999999999875
No 83
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=70.08 E-value=1.8 Score=43.51 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=18.7
Q ss_pred HHHhhcCCCeeEEEecccCCCCcccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
+..++.|.+ ++..++||||||.+.
T Consensus 60 i~~~~~~~~--~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 60 IPVMLHGRE--LLASAPTGSGKTLAF 83 (245)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 445667876 678899999999874
No 84
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=69.40 E-value=2.1 Score=45.62 Aligned_cols=42 Identities=29% Similarity=0.412 Sum_probs=25.5
Q ss_pred eeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 110 AYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 110 ~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.|+.+++ |+.+.+ .+-..+-.|--..++-||++|+|||+++.
T Consensus 23 ~~~~~~g----~~~~~~----~L~~~i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 23 TLDEVYG----QNEVIT----TVRKFVDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp SGGGCCS----CHHHHH----HHHHHHHTTCCCCEEEECSSSSSHHHHHH
T ss_pred cHHHhcC----cHHHHH----HHHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 4566664 444443 23333334532237779999999999985
No 85
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=69.31 E-value=1.2 Score=44.95 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=18.5
Q ss_pred HHHhhcCCCeeEEEecccCCCCcccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
+..++.|.| ++.+++||||||.+.
T Consensus 61 i~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 61 IIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 344567866 677999999999874
No 86
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=69.28 E-value=1.3 Score=47.01 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=32.8
Q ss_pred EeeceecCCCCcchhHHHHHHHHHHH-HhhcCC---CeeEEEecccCCCCccccc
Q 002982 109 YAYDRVFGPTTTTRHVYDIAAQHVVS-GAMDGI---NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~-~vl~Gy---N~tIfAYGqTGSGKTyTM~ 159 (861)
..||.|.+.+..-+.+.+.+..|+.. ..+.+. ...|+-||++|+|||+...
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 56888877655545555555444432 222332 2468999999999999875
No 87
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=69.08 E-value=1.5 Score=47.48 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=33.4
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHH-HhhcCC---CeeEEEecccCCCCccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVS-GAMDGI---NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~-~vl~Gy---N~tIfAYGqTGSGKTyTM~ 159 (861)
..+||.|.+.+..-+.+.+.+..|+-. .++.+. ...|+-||++|+|||+...
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHH
Confidence 367888877655555555555444332 233332 2358889999999999875
No 88
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.67 E-value=3.6 Score=46.13 Aligned_cols=51 Identities=25% Similarity=0.382 Sum_probs=36.7
Q ss_pred EeeceecCCCCcchhHHHHHHHHHHH-Hhhc--CC--CeeEEEecccCCCCccccc
Q 002982 109 YAYDRVFGPTTTTRHVYDIAAQHVVS-GAMD--GI--NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~-~vl~--Gy--N~tIfAYGqTGSGKTyTM~ 159 (861)
-+||.|-|-+.--+++.+.+.-|+.. ..|. |. ...|+-||++|+|||+...
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHH
Confidence 57788877766667777777777654 3343 32 3568999999999998875
No 89
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=68.64 E-value=1.9 Score=45.30 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=20.0
Q ss_pred HHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 132 VVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
+...+..|....++-||++|+|||+++.
T Consensus 49 l~~~l~~~~~~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 49 LKKTLKSANLPHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp HHHHTTCTTCCCEEEECSTTSSHHHHHH
T ss_pred HHHHHhcCCCCEEEEECCCCCCHHHHHH
Confidence 3444445533448889999999999875
No 90
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=68.45 E-value=0.68 Score=48.54 Aligned_cols=51 Identities=10% Similarity=0.102 Sum_probs=27.9
Q ss_pred EeeceecCCCCcchhHHHHHHHHHHH-HhhcCCC----eeEEEecccCCCCccccc
Q 002982 109 YAYDRVFGPTTTTRHVYDIAAQHVVS-GAMDGIN----GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~-~vl~GyN----~tIfAYGqTGSGKTyTM~ 159 (861)
.+||.|-+.+.--+.+.+.+..|+-. .++.+++ ..|+-||++|+|||+.+.
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLak 62 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAK 62 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHH
Confidence 56777665544445555545444432 2333322 228899999999999875
No 91
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=67.84 E-value=2.1 Score=47.99 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=22.5
Q ss_pred HHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 131 HVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 131 plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
+++..++..-.+.|.-.|+||||||.||.
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 34555555556788899999999999985
No 92
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=67.73 E-value=1.7 Score=45.79 Aligned_cols=21 Identities=38% Similarity=0.661 Sum_probs=17.7
Q ss_pred CCCeeEEEecccCCCCccccc
Q 002982 139 GINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 139 GyN~tIfAYGqTGSGKTyTM~ 159 (861)
+....|+-||++|+|||+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHH
Confidence 445688999999999999885
No 93
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=67.72 E-value=2.1 Score=42.66 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=18.0
Q ss_pred HHHhhcCCCeeEEEecccCCCCcccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
+..++.|.+ ++..++||||||.+.
T Consensus 56 i~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 56 IGLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCCcHHHHH
Confidence 344567766 566789999999874
No 94
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=67.71 E-value=2.2 Score=45.40 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=27.8
Q ss_pred EeeceecCCCCcchhHHHHHHHHHHHHhhc-CCCeeEEEecccCCCCccccc
Q 002982 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMD-GINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~~vl~-GyN~tIfAYGqTGSGKTyTM~ 159 (861)
|.++.+++ ++...+.+. ..+..++. +...+|+-||++|+|||+++.
T Consensus 17 ~~p~~l~g----r~~~~~~l~-~~l~~~~~~~~~~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 17 SVFKEIPF----REDILRDAA-IAIRYFVKNEVKFSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp HHCSSCTT----CHHHHHHHH-HHHHHHHTTCCCCEEEEEECTTSSHHHHHH
T ss_pred cCCCCCCC----hHHHHHHHH-HHHHHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence 44444443 344444333 23344433 445589999999999999874
No 95
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=67.41 E-value=18 Score=33.59 Aligned_cols=26 Identities=23% Similarity=0.097 Sum_probs=19.1
Q ss_pred HHHHHHhHHhhhhhHHHHHHHHHHHH
Q 002982 609 IQEQLNQKICECEGLQETIGFLKQQL 634 (861)
Q Consensus 609 lqeql~~k~~e~~elqe~v~~l~qql 634 (861)
.+|.|..|..+|.+|.+++..++..|
T Consensus 36 AEeaL~~Kq~~idelk~ei~q~~~~l 61 (110)
T 2v4h_A 36 AEEALVAKQELIDKLKEEAEQHKIVM 61 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888888877766644
No 96
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=67.14 E-value=2.1 Score=42.08 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=18.5
Q ss_pred HHHhhcCCCeeEEEecccCCCCccccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
+..+++|.| ++..++||||||.+..
T Consensus 45 i~~~~~~~~--~li~~~TGsGKT~~~~ 69 (220)
T 1t6n_A 45 IPQAILGMD--VLCQAKSGMGKTAVFV 69 (220)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCchhhhhh
Confidence 345567766 5667899999998754
No 97
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=66.59 E-value=1.2 Score=43.23 Aligned_cols=23 Identities=39% Similarity=0.398 Sum_probs=17.3
Q ss_pred HhhcCCCeeEEEecccCCCCccccc
Q 002982 135 GAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 135 ~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.++.|.+ ++.+++||+|||++..
T Consensus 44 ~~~~~~~--~li~~~tGsGKT~~~~ 66 (216)
T 3b6e_A 44 PALEGKN--IIICLPTGSGKTRVAV 66 (216)
T ss_dssp HHHTTCC--EEEECSCHHHHHHHHH
T ss_pred HHhcCCC--EEEEcCCCCCHHHHHH
Confidence 3456655 5678999999999864
No 98
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=66.57 E-value=12 Score=32.31 Aligned_cols=19 Identities=26% Similarity=0.235 Sum_probs=8.7
Q ss_pred HHHHHHhHHhhhhhHHHHH
Q 002982 609 IQEQLNQKICECEGLQETI 627 (861)
Q Consensus 609 lqeql~~k~~e~~elqe~v 627 (861)
++.+|++|-.++.+||..+
T Consensus 45 LEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 45 LELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334445555555544443
No 99
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=66.09 E-value=12 Score=32.35 Aligned_cols=64 Identities=19% Similarity=0.286 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccCcccccccccchhhhHHHHHHhHHhhhhhHHHHHHHH
Q 002982 557 LQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQVKAADNRIIQEQLNQKICECEGLQETIGFL 630 (861)
Q Consensus 557 ~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~ik~adnrilqeql~~k~~e~~elqe~v~~l 630 (861)
+...|+.++.+=++.+.+++.||++|-+|-.....- ..|+ .-+.|+|--|+.|..||...++.|
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~--~~El--------k~~~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAF--RSNL--------KTLLEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--HHHH--------HHHHHHHhhHHHHHHHHHHHHHHh
Confidence 345788999999999999999999999886543211 1222 346899999999999887766654
No 100
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=65.43 E-value=2.3 Score=46.61 Aligned_cols=28 Identities=32% Similarity=0.411 Sum_probs=21.3
Q ss_pred HHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 132 VVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
++..++.--.+.|.-.|+||||||.+|.
T Consensus 114 ~l~~l~~~~~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 114 VFKRVSDVPRGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp HHHHHHHCSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHHHH
Confidence 3444555555688889999999999985
No 101
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=65.14 E-value=3.1 Score=46.59 Aligned_cols=47 Identities=15% Similarity=0.118 Sum_probs=30.6
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHHHhhcCCC--eeEEEecccCCCCccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGIN--GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN--~tIfAYGqTGSGKTyTM~ 159 (861)
.|.||.|.+ |+++.+. +..++..+..|.. ..|+-||++|+|||+...
T Consensus 33 ~~~~~~iiG----~~~~~~~-l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 33 KQAASGLVG----QENAREA-CGVIVELIKSKKMAGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp CSEETTEES----CHHHHHH-HHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHH
T ss_pred hhchhhccC----HHHHHHH-HHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHH
Confidence 466777765 4445443 2345555555643 357889999999999875
No 102
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=65.14 E-value=2.1 Score=44.03 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=18.7
Q ss_pred HHHHhhcCCCeeEEEecccCCCCcccc
Q 002982 132 VVSGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
++..++.|.| ++..++||||||.+.
T Consensus 84 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 108 (262)
T 3ly5_A 84 SIRPLLEGRD--LLAAAKTGSGKTLAF 108 (262)
T ss_dssp HHHHHHHTCC--CEECCCTTSCHHHHH
T ss_pred HHHHHhCCCc--EEEEccCCCCchHHH
Confidence 3444567766 678899999999874
No 103
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=65.02 E-value=2.4 Score=44.69 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=19.9
Q ss_pred HHHhhcCCCeeEEEecccCCCCcccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
+..++.|-...++++++||||||.+.
T Consensus 123 i~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 123 LPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHcCCCCeEEEECCCCCCccHHH
Confidence 45567774456788999999999874
No 104
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=64.87 E-value=2.4 Score=42.77 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=17.7
Q ss_pred HHhhcCCCeeEEEecccCCCCccccc
Q 002982 134 SGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
..++.|.| ++..++||||||.+..
T Consensus 55 ~~i~~~~~--~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 55 PAILEHRD--IMACAQTGSGKTAAFL 78 (253)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHHH
T ss_pred HHHhCCCC--EEEECCCCChHHHHHH
Confidence 34567766 5667899999998753
No 105
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=64.62 E-value=10 Score=34.71 Aligned_cols=69 Identities=26% Similarity=0.286 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhh----------hhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHh
Q 002982 684 QAAEIEELNRKVTELTEAKEQLELRNQKLSEESS----------YAKGLASAAAVELKALSEEVAKLMNHKERLTAELAA 753 (861)
Q Consensus 684 q~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~----------yak~lasaaavelk~l~eevtkl~~qn~~l~~el~~ 753 (861)
-..+|+.|..|..+|.++|+.||.+--+..=-.- |..-.|+.|-... .++|.||..++++|-.-+.+
T Consensus 17 lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~---~~~~e~Lq~E~erLr~~v~~ 93 (100)
T 1go4_E 17 LRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRL---REDHSQLQAECERLRGLLRA 93 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHH---HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999988755332222 3556777776554 48999999999999766654
Q ss_pred hc
Q 002982 754 AK 755 (861)
Q Consensus 754 ~~ 755 (861)
.-
T Consensus 94 lE 95 (100)
T 1go4_E 94 ME 95 (100)
T ss_dssp CC
T ss_pred Hh
Confidence 43
No 106
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=64.47 E-value=1e+02 Score=29.57 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=21.5
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhc
Q 002982 724 SAAAVELKALSEEVAKLMNHKERLTAELAAAK 755 (861)
Q Consensus 724 saaavelk~l~eevtkl~~qn~~l~~el~~~~ 755 (861)
..-..+++.|..++..|+..|..|...+-..+
T Consensus 46 ~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~ 77 (155)
T 2oto_A 46 GRDFKRAEELEKAKQALEDQRKDLETKLKELQ 77 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777778888888887776654443
No 107
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=64.45 E-value=2.8 Score=44.82 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=18.9
Q ss_pred HHHhhcCCCeeEEEecccCCCCcccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
+..++.|.+ ++..++||||||.+.
T Consensus 71 i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 71 ILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred hHHHhCCCC--EEEECCCCCcccHHH
Confidence 445667877 677899999999874
No 108
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=64.10 E-value=1.6 Score=48.87 Aligned_cols=52 Identities=13% Similarity=0.165 Sum_probs=30.6
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHH-HhhcC---CCeeEEEecccCCCCccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVS-GAMDG---INGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~-~vl~G---yN~tIfAYGqTGSGKTyTM~ 159 (861)
...||.|.+.+..-+.+.+.+..|+.. .++.| ....|+-||++|+|||+...
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHH
Confidence 367888776543333333333333321 23333 23568889999999999875
No 109
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=64.08 E-value=2.7 Score=41.66 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=18.3
Q ss_pred HHHhhcCCCeeEEEecccCCCCccccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
+..++.|.|. +..++||||||.+..
T Consensus 51 i~~~~~~~~~--l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 51 WPIILQGIDL--IVVAQTGTGKTLSYL 75 (228)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHHH
T ss_pred HHHHhCCCCE--EEECCCCChHHHHHH
Confidence 3445677664 677999999998753
No 110
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=63.77 E-value=17 Score=31.44 Aligned_cols=30 Identities=30% Similarity=0.286 Sum_probs=27.7
Q ss_pred hhHHHHHHhHHhhhhhHHHHHHHHHHHHHH
Q 002982 607 RIIQEQLNQKICECEGLQETIGFLKQQLND 636 (861)
Q Consensus 607 rilqeql~~k~~e~~elqe~v~~l~qql~~ 636 (861)
|-||+.|+.|..|+...++.|..|+.+|..
T Consensus 22 ~eLq~~L~~K~eELr~kd~~I~eLEk~L~e 51 (72)
T 3nmd_A 22 RDLQYALQEKIEELRQRDALIDELELELDQ 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999755
No 111
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=63.63 E-value=2.4 Score=42.69 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=18.7
Q ss_pred HHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 131 HVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 131 plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.++..+..|- .++..|+||||||..+.
T Consensus 68 ~~i~~i~~g~--~~~i~g~TGsGKTt~~~ 94 (235)
T 3llm_A 68 EILEAISQNS--VVIIRGATGCGKTTQVP 94 (235)
T ss_dssp HHHHHHHHCS--EEEEECCTTSSHHHHHH
T ss_pred HHHHHHhcCC--EEEEEeCCCCCcHHhHH
Confidence 3444555664 46778999999997653
No 112
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=63.59 E-value=44 Score=31.31 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=21.1
Q ss_pred HHHhhHHHHHHHhhhhhhHHHHHHhhc
Q 002982 729 ELKALSEEVAKLMNHKERLTAELAAAK 755 (861)
Q Consensus 729 elk~l~eevtkl~~qn~~l~~el~~~~ 755 (861)
+|++.++||.+|..+|.-|...++..+
T Consensus 86 ~Lq~a~ae~erlr~~~~~~~~r~~~~~ 112 (121)
T 3mq7_A 86 KLQDASAEVERLRRENQVLSVRIADKK 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhhchhhhhHhhhcc
Confidence 678889999999999999888877665
No 113
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=62.58 E-value=9.8 Score=33.44 Aligned_cols=65 Identities=17% Similarity=0.258 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccCcccccccccchhhhHHHHHHhHHhhhhhHHHHHHHH
Q 002982 556 QLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQVKAADNRIIQEQLNQKICECEGLQETIGFL 630 (861)
Q Consensus 556 ~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~ik~adnrilqeql~~k~~e~~elqe~v~~l 630 (861)
.+...|+.++.+=++.+.+++.||++|-+|-.....- ..| + .-+.|+|--|+.|..||+..++.|
T Consensus 10 ~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~--~~E---l-----k~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 10 ETQQKVQDLETRNAELEHQLRAMERSLEEARAERERA--RAE---V-----GRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH---H-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH--HHH---H-----HHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3445788999999999999999999999876543211 122 2 346899999999999877766654
No 114
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=62.50 E-value=2.8 Score=42.19 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=17.1
Q ss_pred HHhhcCCCeeEEEecccCCCCcccc
Q 002982 134 SGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
..++.|.| ++..++||||||.+.
T Consensus 61 ~~~~~g~~--~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 61 PVALSGLD--MVGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHTCC--EEEEECTTSCHHHHH
T ss_pred HHHhCCCC--EEEECCCcCHHHHHH
Confidence 34567766 456689999999884
No 115
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=62.47 E-value=21 Score=34.23 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhHHhHhhhhhhhhhchhh
Q 002982 685 AAEIEELNRKVTELTEAKEQLELRNQKLS 713 (861)
Q Consensus 685 ~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ 713 (861)
..++++++++..+|.+++..|+.++.||.
T Consensus 102 ~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 102 QIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777777777777777777773
No 116
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=62.13 E-value=4.4 Score=37.72 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=16.2
Q ss_pred CCeeEEEecccCCCCccccc
Q 002982 140 INGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM~ 159 (861)
.+..|+-||++|+|||+...
T Consensus 26 ~~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHG
T ss_pred CCCcEEEECCCCccHHHHHH
Confidence 34568889999999998764
No 117
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=61.64 E-value=2.6 Score=48.05 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=29.2
Q ss_pred EeeceecCCCCcchhHHHHHHHHHHH-Hhh----cCCCeeEEEecccCCCCccccc
Q 002982 109 YAYDRVFGPTTTTRHVYDIAAQHVVS-GAM----DGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~-~vl----~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
..||.+.+....-+.+++.+..++-. .++ ......|+-||++|+|||+...
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHH
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHH
Confidence 34555554443334444444333221 111 2345679999999999999875
No 118
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=61.57 E-value=3.2 Score=41.41 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=16.9
Q ss_pred HhhcCCCeeEEEecccCCCCcccc
Q 002982 135 GAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 135 ~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
.++.|.| ++..++||||||.+.
T Consensus 57 ~~~~~~~--~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 57 LGRCGLD--LIVQAKSGTGKTCVF 78 (230)
T ss_dssp HHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHhCCCC--EEEECCCCCcHHHHH
Confidence 4567766 566789999999874
No 119
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=61.39 E-value=3.1 Score=42.40 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=17.6
Q ss_pred HHHhhcCCCeeEEEecccCCCCcccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
+..++.|.+ ++..++||||||.+.
T Consensus 74 i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 74 IPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEcCCCCCchhHh
Confidence 344567765 566789999999874
No 120
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=61.20 E-value=71 Score=29.67 Aligned_cols=62 Identities=26% Similarity=0.249 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhHHH---HHHHHHHHHHhhhhcccCccCcccccccccchhhhHHHHHHhHHhhhhhHHHHHHHHHHH
Q 002982 557 LQVEIKKLRDEIKGKND---QIALLEKQIADSIMTSHNTMDNSEVSQVKAADNRIIQEQLNQKICECEGLQETIGFLKQQ 633 (861)
Q Consensus 557 ~~~~~~~l~~ei~~k~~---qi~~le~~i~~s~~~s~~~~~~~~~~~ik~adnrilqeql~~k~~e~~elqe~v~~l~qq 633 (861)
-+.+|.+|+.||..++. +|.+|++|+-=.-.. +++ =|-=-|-++ .|.++|++.+..|+.|
T Consensus 43 Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~D-------F~a-------ERadREkl~---~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 43 KQELIDKLKEEAEQHKIVMETVPVLKAQADIYKAD-------FQA-------ERHAREKLV---EKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH-------HHH-------HHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------Hcc-------chhhHHHHH---hHHHHHHHHHHHHHHH
Confidence 45689999999998888 888999887511111 000 122233333 4567777888888877
Q ss_pred HH
Q 002982 634 LN 635 (861)
Q Consensus 634 l~ 635 (861)
++
T Consensus 106 ~~ 107 (110)
T 2v4h_A 106 FN 107 (110)
T ss_dssp HT
T ss_pred HH
Confidence 54
No 121
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=60.36 E-value=4 Score=39.24 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=15.8
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..++-||++|+|||+.+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp SEEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 478899999999999874
No 122
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=60.30 E-value=3.4 Score=43.07 Aligned_cols=20 Identities=40% Similarity=0.506 Sum_probs=16.6
Q ss_pred CCeeEEEecccCCCCccccc
Q 002982 140 INGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM~ 159 (861)
-...|.-.|+||||||.+|.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHH
Confidence 34577788999999999985
No 123
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=59.55 E-value=3.5 Score=45.76 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=20.6
Q ss_pred HHHhhcCCCeeEEEecccCCCCcccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
+..++.|.+..++..|+||||||.+.
T Consensus 123 i~~il~~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 123 LPLMLAEPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp HHHHTSBSCCEEEEECCSSSSHHHHH
T ss_pred HHHHHcCCCCcEEEEcCCCCchhHHH
Confidence 44556776677899999999999774
No 124
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=59.52 E-value=3.9 Score=41.99 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=16.4
Q ss_pred CeeEEEecccCCCCccccc
Q 002982 141 NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (861)
...|+-||++|+|||++..
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4578889999999999875
No 125
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=59.50 E-value=13 Score=34.01 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 002982 557 LQVEIKKLRDEIKGKNDQIALLEKQIAD 584 (861)
Q Consensus 557 ~~~~~~~l~~ei~~k~~qi~~le~~i~~ 584 (861)
+..+|+.|+.|....++++..||-+|.+
T Consensus 17 lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 17 LRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5568899999999999999999999976
No 126
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=59.33 E-value=1.5e+02 Score=29.86 Aligned_cols=84 Identities=20% Similarity=0.216 Sum_probs=49.3
Q ss_pred HHHHhhHHHHHHHhhhhhhHHHHHHhhcCCCcccccccccCCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 002982 728 VELKALSEEVAKLMNHKERLTAELAAAKSSPTQRRTSAVRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSYEAALLE 807 (861)
Q Consensus 728 velk~l~eevtkl~~qn~~l~~el~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~el~~~~~re~~le~~l~e 807 (861)
..+-.|-.|++.|...|..|..-+--.--.. + ---|..++.. .+++|+..=|+..-+|-|-||.=|-|
T Consensus 88 ~~~~~Lq~el~~l~~~~~~l~~~ireLEq~N------D-dlEr~~R~~~-----~SleD~e~kln~aiEr~alLE~El~E 155 (189)
T 2v71_A 88 KQVSVLEDDLSQTRAIKEQLHKYVRELEQAN------D-DLERAKRATI-----MSLEDFEQRLNQAIERNAFLESELDE 155 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H-HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------h-HHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777777766542211000 0 0001111111 26789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 002982 808 KDQQEAELQRKVEESK 823 (861)
Q Consensus 808 k~~~e~el~~~~ee~k 823 (861)
|+++..+.||=-||.+
T Consensus 156 Ke~l~~~~QRLkdE~r 171 (189)
T 2v71_A 156 KESLLVSVQRLKDEAR 171 (189)
T ss_dssp HHHHHCCC--------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988888875
No 127
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.04 E-value=1.8 Score=49.37 Aligned_cols=51 Identities=22% Similarity=0.320 Sum_probs=35.4
Q ss_pred EeeceecCCCCcchhHHHHHHHHHHH-Hhhc--C--CCeeEEEecccCCCCccccc
Q 002982 109 YAYDRVFGPTTTTRHVYDIAAQHVVS-GAMD--G--INGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~-~vl~--G--yN~tIfAYGqTGSGKTyTM~ 159 (861)
.+||-|-+-+.--+++.+.+.-|+.. ..+. | .--.|+-||++|+|||++..
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHH
Confidence 57788877666556666666666653 3333 3 34568999999999998765
No 128
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=58.72 E-value=2.4 Score=41.86 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=17.2
Q ss_pred HHhhcCCCeeEEEecccCCCCcccc
Q 002982 134 SGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
..+++|.| ++..++||||||.+.
T Consensus 36 ~~~~~~~~--~lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 36 PGALRGES--MVGQSQTGTGKTHAY 58 (219)
T ss_dssp HHHHHTCC--EEEECCSSHHHHHHH
T ss_pred HHHhCCCC--EEEECCCCChHHHHH
Confidence 44566766 466789999999874
No 129
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=58.71 E-value=3.7 Score=43.68 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=19.9
Q ss_pred HHHhhcCCCeeEEEecccCCCCcccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
+..++.|.+..++..++||||||.+.
T Consensus 56 i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 56 LPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHhcCCCCeEEEECCCCchHHHHH
Confidence 44556675566788899999999874
No 130
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=58.62 E-value=94 Score=28.62 Aligned_cols=73 Identities=14% Similarity=0.223 Sum_probs=53.4
Q ss_pred cccchhhHHHHHHHHHHhhhhhhhhhhHHHHhHHHHhcCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 002982 513 SIKTIDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIM 587 (861)
Q Consensus 513 ~~~~~d~~dllreq~k~l~geva~~~s~lkrl~e~a~~~p~~~~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~ 587 (861)
.+||+| |.-|.+-.+-.-+....-.-=||--.++...||++-.- .=++.=..+++..+..|+-|.++|++.+.
T Consensus 31 ~~tM~~-ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK-~tl~~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 31 PFTMST-LQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNK-STLQNRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp SHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777 55555555555555555556688888999999998764 34666778888888888888888888765
No 131
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=58.43 E-value=15 Score=33.79 Aligned_cols=68 Identities=19% Similarity=0.361 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccCcccccccccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHh
Q 002982 560 EIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALE 639 (861)
Q Consensus 560 ~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~ik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~~~ 639 (861)
.|+.|.+||+.-..|.-.==|++.+.-.+-.-..|- |=.--|++...+..-||.+++.||+||+++..
T Consensus 36 ~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDe------------vNK~tl~~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 36 TLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDD------------VNKSTLQNRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888777777776655442211121 11233567788999999999999999998643
No 132
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=58.37 E-value=3.7 Score=43.28 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=19.3
Q ss_pred HHHhhcCCCeeEEEecccCCCCcccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
+..++.|-...++..++||||||.+.
T Consensus 36 i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 36 LPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 34556774456788899999999864
No 133
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=57.78 E-value=3.2 Score=42.68 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=19.4
Q ss_pred HHHhhcCCC--eeEEEecccCCCCccccc
Q 002982 133 VSGAMDGIN--GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 133 V~~vl~GyN--~tIfAYGqTGSGKTyTM~ 159 (861)
+..++.|.- -+++-||+.|+|||+...
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 344455532 468999999999998764
No 134
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.63 E-value=11 Score=42.76 Aligned_cols=89 Identities=16% Similarity=0.263 Sum_probs=49.7
Q ss_pred EEEecCCCChhh-hccCCeEEEecCCCEEEe--CC-CCC---------ceeEeeceecCCCCcchhHHHHHHHHHHH-Hh
Q 002982 71 VTVRFRPLSPRE-IRQGEEIAWYADGETILR--NE-DNP---------SIAYAYDRVFGPTTTTRHVYDIAAQHVVS-GA 136 (861)
Q Consensus 71 V~VRVRPl~~~E-~~~g~~~~~~~d~~~iv~--~~-~~~---------~~~F~FD~VF~~~atQeeVY~~~~~plV~-~v 136 (861)
.+|++......+ +..|..+....+...++. .. ..+ .-.-+||.|-+-+.--+++.+.+.-|+.. ..
T Consensus 128 ~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~ 207 (437)
T 4b4t_I 128 YYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPEL 207 (437)
T ss_dssp CEEECCTTSCGGGCCTTCEEEECTTTCCEEEEECCCSSCCCCCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHH
T ss_pred EEEecccccCHhHccCCcEEEEeccCccceeecCCccCCcceeeeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHH
Confidence 345566554444 445666655544443321 11 111 11246676666555556666666666643 23
Q ss_pred hc--C--CCeeEEEecccCCCCccccc
Q 002982 137 MD--G--INGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 137 l~--G--yN~tIfAYGqTGSGKTyTM~ 159 (861)
+. | +-..|+-||++|+|||+...
T Consensus 208 f~~~Gi~~prGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 208 YEEMGIKPPKGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp HHHHTCCCCSEEEEESSTTTTHHHHHH
T ss_pred HHhCCCCCCCCCceECCCCchHHHHHH
Confidence 33 3 33579999999999998875
No 135
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=57.62 E-value=6.1 Score=44.47 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=20.3
Q ss_pred HHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 132 VVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
++..+-.+....++-||++|+|||+...
T Consensus 192 l~~~l~r~~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 192 VIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp HHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred HHHHHhccCCCCeEEECCCCCCHHHHHH
Confidence 3443434555667889999999999875
No 136
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=57.50 E-value=4.7 Score=42.76 Aligned_cols=30 Identities=27% Similarity=0.399 Sum_probs=23.7
Q ss_pred HHHHHHhhcCC---CeeEEEecccCCCCccccc
Q 002982 130 QHVVSGAMDGI---NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 130 ~plV~~vl~Gy---N~tIfAYGqTGSGKTyTM~ 159 (861)
...+..++.|. --||+-||+.|+|||+...
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 44467777776 3479999999999999875
No 137
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=57.43 E-value=3.8 Score=43.93 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=18.1
Q ss_pred HHHhhcCCCeeEEEecccCCCCcccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
+..++.|.| ++..++||||||.+.
T Consensus 68 i~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 68 IKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCCchHHH
Confidence 334567876 667899999999775
No 138
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=57.07 E-value=7.1 Score=41.04 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=22.0
Q ss_pred HHHHHHHHhhcCC-----CeeEEEecccCCCCccccc
Q 002982 128 AAQHVVSGAMDGI-----NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 128 ~~~plV~~vl~Gy-----N~tIfAYGqTGSGKTyTM~ 159 (861)
+...++..++.|+ ...|+..|++|||||+...
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHH
Confidence 4445555555443 3468889999999998764
No 139
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=56.93 E-value=4.8 Score=41.55 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=17.4
Q ss_pred cCCCeeEEEecccCCCCccccc
Q 002982 138 DGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 138 ~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.|....++-||++|+|||++..
T Consensus 43 ~~~~~~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 43 TGSMPHLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp HTCCCEEEEESCTTSSHHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHHH
Confidence 3544458889999999999874
No 140
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=56.02 E-value=3.3 Score=38.57 Aligned_cols=21 Identities=14% Similarity=0.415 Sum_probs=17.3
Q ss_pred CCCeeEEEecccCCCCccccc
Q 002982 139 GINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 139 GyN~tIfAYGqTGSGKTyTM~ 159 (861)
..+..|+-||++|+|||+...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 455678999999999998863
No 141
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=55.84 E-value=3.7 Score=42.42 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=16.1
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..|+-||++|+|||++..
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 578999999999999874
No 142
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=55.64 E-value=3.3 Score=43.59 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=15.5
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..|+-||++|+|||+.+.
T Consensus 47 ~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp CCEEEESCCCHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 367889999999999875
No 143
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=55.26 E-value=59 Score=31.50 Aligned_cols=63 Identities=29% Similarity=0.409 Sum_probs=48.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHH----HHhhH-HHHHHHHHHHHHHh------------hhhHHHHHhhhhhHHHHHHHhh
Q 002982 782 GSSLDLKRELALSREREVSYEA----ALLEK-DQQEAELQRKVEES------------KKREAYLENELANMWVLVAKLK 844 (861)
Q Consensus 782 ~~~~~~~~el~~~~~re~~le~----~l~ek-~~~e~el~~~~ee~------------k~~e~~lenelanmwvlvaklk 844 (861)
.+.+|+++=|.|.-+|-.++|| .|++| ++.++-|++.+|+. .+=|++=||-=|.|-.|.-+||
T Consensus 43 ~SleEIqkKLeAAEERRks~Ea~~lk~laekrehe~EvlqKa~Een~~F~k~aeEkL~~KME~~kEnReA~laal~erLk 122 (143)
T 3ryc_E 43 PSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQ 122 (143)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4789999999999999888887 45665 44455566666653 3446777899999999998887
No 144
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=55.15 E-value=5.9 Score=42.41 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=20.1
Q ss_pred HHhhcC---CCeeEEE--ecccCCCCccccc
Q 002982 134 SGAMDG---INGTIFA--YGVTSSGKTHTMH 159 (861)
Q Consensus 134 ~~vl~G---yN~tIfA--YGqTGSGKTyTM~ 159 (861)
..+..| -...++- ||+.|+|||+.+.
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHHH
Confidence 444555 4567888 9999999999875
No 145
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=54.84 E-value=4.6 Score=41.48 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=17.7
Q ss_pred hcCCCeeEEEecccCCCCccccc
Q 002982 137 MDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 137 l~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
-.|....++-||++|+|||++..
T Consensus 34 ~~~~~~~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 34 ERKNIPHLLFSGPPGTGKTATAI 56 (319)
T ss_dssp TTTCCCCEEEESSSSSSHHHHHH
T ss_pred hCCCCCeEEEECcCCcCHHHHHH
Confidence 34544458899999999999874
No 146
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=54.80 E-value=4.3 Score=43.30 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=17.4
Q ss_pred HHhhcCCCeeEEEecccCCCCcccc
Q 002982 134 SGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
..++.|.+ ++..++||||||.+.
T Consensus 53 ~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 53 PVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHhcCCC--EEEECCCCcHHHHHH
Confidence 44556766 677899999999765
No 147
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=54.51 E-value=1e+02 Score=30.59 Aligned_cols=31 Identities=19% Similarity=0.038 Sum_probs=20.0
Q ss_pred hhhHHHHHHhHHhhhhhHHHHHHHHHHHHHH
Q 002982 606 NRIIQEQLNQKICECEGLQETIGFLKQQLND 636 (861)
Q Consensus 606 nrilqeql~~k~~e~~elqe~v~~l~qql~~ 636 (861)
||.||+.+..=-.....|+..+..|.-||..
T Consensus 50 ~rELq~~~~~L~~~k~~Leke~~~LQa~L~q 80 (168)
T 3o0z_A 50 NRELQERNRILENSKSQTDKDYYQLQAILEA 80 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666666644
No 148
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=54.23 E-value=4.7 Score=41.50 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=17.6
Q ss_pred HHhhcCCCeeEEEecccCCCCccccc
Q 002982 134 SGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
..++.|.+ ++..++||+|||.+..
T Consensus 26 ~~i~~~~~--~lv~~~TGsGKT~~~~ 49 (337)
T 2z0m_A 26 PLMLQGKN--VVVRAKTGSGKTAAYA 49 (337)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHHH
T ss_pred HHHhcCCC--EEEEcCCCCcHHHHHH
Confidence 34556765 5667899999998764
No 149
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=54.23 E-value=6.3 Score=41.42 Aligned_cols=45 Identities=18% Similarity=0.230 Sum_probs=27.7
Q ss_pred eeceecCCCCcchhHHHHHHHHHHHHhh--cCCCeeEEEecccCCCCccccc
Q 002982 110 AYDRVFGPTTTTRHVYDIAAQHVVSGAM--DGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 110 ~FD~VF~~~atQeeVY~~~~~plV~~vl--~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.||.+.+. +.+...+ ..++..+. .+....|+-||++|+|||+...
T Consensus 27 ~~~~iiG~----~~~~~~l-~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 27 NFDGYIGQ----ESIKKNL-NVFIAAAKKRNECLDHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp SGGGCCSC----HHHHHHH-HHHHHHHHHTTSCCCCEEEECSTTSSHHHHHH
T ss_pred CHHHhCCh----HHHHHHH-HHHHHHHHhcCCCCCeEEEECcCCCCHHHHHH
Confidence 46665543 3444432 23344332 3445678999999999999875
No 150
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=54.21 E-value=7.7 Score=40.23 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=17.3
Q ss_pred CCCeeEEEecccCCCCccccc
Q 002982 139 GINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 139 GyN~tIfAYGqTGSGKTyTM~ 159 (861)
+....|+-||++|+|||+...
T Consensus 36 ~~~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 36 EPLEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp SCCCCCEEECCTTCCCHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHH
Confidence 345678889999999999875
No 151
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=53.84 E-value=4.8 Score=40.95 Aligned_cols=23 Identities=26% Similarity=0.026 Sum_probs=17.3
Q ss_pred HhhcCCCeeEEEecccCCCCccccc
Q 002982 135 GAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 135 ~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.++.+.+ ++.+|+||+|||++..
T Consensus 104 ~~~~~~~--~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 104 RWLVDKR--GCIVLPTGSGKTHVAM 126 (237)
T ss_dssp HHTTTSE--EEEEESSSTTHHHHHH
T ss_pred HHHhCCC--EEEEeCCCCCHHHHHH
Confidence 3556654 6678899999999864
No 152
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=53.77 E-value=22 Score=31.20 Aligned_cols=68 Identities=18% Similarity=0.318 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccCcccccccccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHh
Q 002982 560 EIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALE 639 (861)
Q Consensus 560 ~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~ik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~~~ 639 (861)
.|+.|.+||+.--.|+-.==|++.+....-.-..|-+ =.--|++...+..-||.+++.||+||+++..
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDev------------NK~~~~~R~~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDV------------NKSTLQSRRAAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788888888888887777777776554422211211 1223557788999999999999999998753
No 153
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=52.87 E-value=3.1e+02 Score=38.55 Aligned_cols=66 Identities=11% Similarity=0.165 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHH
Q 002982 685 AAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAE 750 (861)
Q Consensus 685 ~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~e 750 (861)
+.++++||.+..+++.+|..|+.+-.+...=-.=|..|=++.+-|=..-.+.|..|..+-..|..+
T Consensus 2041 e~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD 2106 (3245)
T 3vkg_A 2041 EKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGD 2106 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHH
Confidence 455666666666666666666665544444444566666666666666666677777777776666
No 154
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=52.52 E-value=6.3 Score=45.13 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=19.1
Q ss_pred HHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 131 HVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 131 plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.++..+..|.+.++++ ++||||||+++.
T Consensus 189 ~~~~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 189 RAVQSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHHHHhcCCCceEEE-ecCCCChHHHHH
Confidence 3344444576655544 999999999974
No 155
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=52.07 E-value=5.4 Score=42.71 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=17.3
Q ss_pred HHhhcCCCeeEEEecccCCCCcccc
Q 002982 134 SGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
..++.|.| ++..++||||||.+.
T Consensus 47 ~~i~~~~~--~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 47 PIIKEKRD--LMACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHccCCC--EEEEcCCCCHHHHHH
Confidence 34567776 466889999999865
No 156
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=51.90 E-value=6.1 Score=45.38 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=16.8
Q ss_pred hcCCCeeEEEecccCCCCccccc
Q 002982 137 MDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 137 l~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
-.|.+ |.-.|+||||||.||.
T Consensus 258 ~~g~~--i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 258 EHKFS--AIVVGETASGKTTTLN 278 (511)
T ss_dssp HTTCC--EEEEESTTSSHHHHHH
T ss_pred hCCCE--EEEECCCCCCHHHHHH
Confidence 35765 5668999999999984
No 157
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=51.82 E-value=61 Score=29.36 Aligned_cols=70 Identities=20% Similarity=0.284 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccCcccccccccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHHH
Q 002982 556 QLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLN 635 (861)
Q Consensus 556 ~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~ik~adnrilqeql~~k~~e~~elqe~v~~l~qql~ 635 (861)
.|+..|..|+.||.--.++...|++ |.+.-...+.. .|..-++.||.+=...+.-|+..+..++..|.
T Consensus 19 kL~~Ki~el~~ei~ke~~~regl~K-m~~vY~~nP~~-----------GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~ 86 (98)
T 2ke4_A 19 RLQQQLEERSRELQKEVDQREALKK-MKDVYEKTPQM-----------GDPASLEPQIAETLSNIERLKLEVQKYEAWLA 86 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHH-HHHHHHHCGGG-----------CCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCcc-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999998 77666665543 23333488999999999999999999999888
Q ss_pred HH
Q 002982 636 DA 637 (861)
Q Consensus 636 ~~ 637 (861)
.+
T Consensus 87 e~ 88 (98)
T 2ke4_A 87 EA 88 (98)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 158
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=50.63 E-value=4.3 Score=44.47 Aligned_cols=20 Identities=40% Similarity=0.506 Sum_probs=16.9
Q ss_pred CCeeEEEecccCCCCccccc
Q 002982 140 INGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM~ 159 (861)
-...|.-.|+||||||.+|.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~ 154 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIA 154 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 44678889999999999985
No 159
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=50.07 E-value=3.4 Score=47.39 Aligned_cols=51 Identities=16% Similarity=0.310 Sum_probs=29.6
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHH-HhhcCC----CeeEEEecccCCCCccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVS-GAMDGI----NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~-~vl~Gy----N~tIfAYGqTGSGKTyTM~ 159 (861)
.++||.|.+.+..-..+.+. +..+-. .++..+ ...|+-||++|+|||+.+.
T Consensus 27 ~~~f~dv~G~~~~k~~l~~l-v~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLar 82 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEI-VEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 82 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHH-HHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCHHHcCCcHHHHHHHHHH-HHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHH
Confidence 46888887765433333332 211111 123322 2348999999999999875
No 160
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=49.72 E-value=18 Score=30.09 Aligned_cols=39 Identities=36% Similarity=0.479 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhh
Q 002982 684 QAAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGL 722 (861)
Q Consensus 684 q~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~l 722 (861)
.-.+++.|.+++..|..+|..|+.+...|-.|-.|=|+|
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999998887765
No 161
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=49.64 E-value=3.9 Score=46.60 Aligned_cols=51 Identities=14% Similarity=0.259 Sum_probs=29.5
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHH-HhhcC----CCeeEEEecccCCCCccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVS-GAMDG----INGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~-~vl~G----yN~tIfAYGqTGSGKTyTM~ 159 (861)
.++||.|.+.+..-+++.+.+ ..+-. ..+.+ ....|+-||++|+|||+.+.
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v-~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVV-EFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHH-HHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHH-HHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHH
Confidence 468888877654433333321 11110 11221 23458999999999999875
No 162
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=49.63 E-value=30 Score=34.93 Aligned_cols=30 Identities=33% Similarity=0.485 Sum_probs=20.7
Q ss_pred hhhhHHHHHHhHHhhhhhHHHHHHHHHHHH
Q 002982 605 DNRIIQEQLNQKICECEGLQETIGFLKQQL 634 (861)
Q Consensus 605 dnrilqeql~~k~~e~~elqe~v~~l~qql 634 (861)
-|..|-+||..|..|+.-||+++++|++|.
T Consensus 28 En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 28 ENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 366666777777777777777777777764
No 163
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=49.10 E-value=9.4 Score=39.88 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=16.4
Q ss_pred CCeeEEEecccCCCCccccc
Q 002982 140 INGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM~ 159 (861)
....++-||++|+|||+++.
T Consensus 47 ~~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHH
T ss_pred CCeEEEeeCcCCCCHHHHHH
Confidence 34567888999999999986
No 164
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=49.09 E-value=8.3 Score=41.10 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=15.1
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..++-||++|+|||+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 346779999999999875
No 165
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=48.77 E-value=6.5 Score=38.81 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=21.4
Q ss_pred HHHHHhhcC-C--CeeEEEecccCCCCccccc
Q 002982 131 HVVSGAMDG-I--NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 131 plV~~vl~G-y--N~tIfAYGqTGSGKTyTM~ 159 (861)
+-++.++.| + ...+.-+|++|+|||..+.
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHH
Confidence 456677743 3 3467779999999999875
No 166
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=48.57 E-value=6.9 Score=44.19 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=18.3
Q ss_pred HhhcCCCeeEEEecccCCCCcccc
Q 002982 135 GAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 135 ~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
.++.|.+..++..++||||||++.
T Consensus 152 ~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 152 LLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp HHHCSSCCCEEEECCSSTTSHHHH
T ss_pred HHHcCCCCCEEEECCCCccHHHHH
Confidence 456664456788899999999874
No 167
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=48.53 E-value=6.5 Score=41.45 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=14.4
Q ss_pred EEEecccCCCCccccc
Q 002982 144 IFAYGVTSSGKTHTMH 159 (861)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (861)
++-||++|+|||+++.
T Consensus 39 ~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCM 54 (354)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7889999999999874
No 168
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=48.14 E-value=17 Score=33.84 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccCcccccccccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHHHHHH
Q 002982 559 VEIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDAL 638 (861)
Q Consensus 559 ~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~ik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~~ 638 (861)
|.|+.|.+||..-..|+-.==|++.+.-.+---..|-+ =.--|++...+..-||.+|+.||+||+++.
T Consensus 22 ~~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDev------------NK~tl~~R~~~Vs~lq~KiaeLKrqLAd~v 89 (113)
T 4fi5_A 22 MTMEELQREINAHEGQLVIARQKVRDAEKQYEKDPDEL------------NKRTLTDREGVAVSIQAKIDELKRQLADRI 89 (113)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999998888888777777776555422221211 223356778899999999999999999976
Q ss_pred hh
Q 002982 639 EL 640 (861)
Q Consensus 639 ~~ 640 (861)
..
T Consensus 90 a~ 91 (113)
T 4fi5_A 90 AT 91 (113)
T ss_dssp HC
T ss_pred Hh
Confidence 53
No 169
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=47.79 E-value=6.8 Score=41.40 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=18.2
Q ss_pred HHHhhcCCCeeEEEecccCCCCcccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
+..++.|.+ ++..++||+|||.+.
T Consensus 39 i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 39 IPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHhcCCc--EEEECCCCCcHHHHH
Confidence 445667766 566789999999875
No 170
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=47.72 E-value=9.3 Score=38.98 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHhhcCC-CeeEEEecccCCCCccccc
Q 002982 123 HVYDIAAQHVVSGAMDGI-NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 123 eVY~~~~~plV~~vl~Gy-N~tIfAYGqTGSGKTyTM~ 159 (861)
.+|+.+...++.....+- ...|+-.|++|||||+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~ 50 (253)
T 2p5t_B 13 HALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHR 50 (253)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHH
T ss_pred HHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHH
Confidence 444444444443333222 2468889999999998753
No 171
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=47.55 E-value=13 Score=30.05 Aligned_cols=28 Identities=18% Similarity=0.367 Sum_probs=23.2
Q ss_pred HHHHhhHHHHHHHhhhhhhHHHHHHhhc
Q 002982 728 VELKALSEEVAKLMNHKERLTAELAAAK 755 (861)
Q Consensus 728 velk~l~eevtkl~~qn~~l~~el~~~~ 755 (861)
.-+..|..++..|+.+|+||+.-|..+|
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR 36 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEAR 36 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455788899999999999999988877
No 172
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=47.50 E-value=1.7e+02 Score=27.08 Aligned_cols=51 Identities=22% Similarity=0.317 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhh
Q 002982 683 VQAAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNH 743 (861)
Q Consensus 683 ~q~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~q 743 (861)
.-+.+|..||..+...+=.+..||.+-+-|.||-.|=|- +..+||.-|..|
T Consensus 66 ~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk----------~heeEl~eLq~q 116 (119)
T 3ol1_A 66 EAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK----------LHEEEIQELQAQ 116 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHSC
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 347789999999999999999999999999999998553 345677766544
No 173
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=47.18 E-value=6.1 Score=44.46 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=20.4
Q ss_pred HHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 132 VVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
+...+-.|.-..|+-||++|+|||+...
T Consensus 41 L~~~i~~~~~~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 41 LPRAIEAGHLHSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp HHHHHHHTCCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHcCCCcEEEEECCCCCcHHHHHH
Confidence 3333344555688999999999999875
No 174
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=46.92 E-value=6.6 Score=42.46 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=18.1
Q ss_pred HHHhhcCCCeeEEEecccCCCCcccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
+..++.|.| ++..++||||||.+.
T Consensus 30 i~~i~~~~~--~lv~apTGsGKT~~~ 53 (414)
T 3oiy_A 30 AKRIVQGKS--FTMVAPTGVGKTTFG 53 (414)
T ss_dssp HHHHTTTCC--EECCSCSSSSHHHHH
T ss_pred HHHHhcCCC--EEEEeCCCCCHHHHH
Confidence 344567765 678899999999854
No 175
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=46.84 E-value=8.2 Score=43.62 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=20.1
Q ss_pred HHHHhhcCCCeeEEEecccCCCCcccc
Q 002982 132 VVSGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
++..++.|-+..++..++||||||.+.
T Consensus 102 ~i~~~l~~~~~~~lv~apTGsGKTl~~ 128 (563)
T 3i5x_A 102 TIKPILSSEDHDVIARAKTGTGKTFAF 128 (563)
T ss_dssp HHHHHHSSSSEEEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCCCccHHH
Confidence 344556565667888999999999873
No 176
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=46.81 E-value=4.7 Score=41.53 Aligned_cols=22 Identities=14% Similarity=0.036 Sum_probs=15.6
Q ss_pred hhcCCCeeEEEecccCCCCccccc
Q 002982 136 AMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 136 vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
++.|.++ +..++||+|||.+..
T Consensus 125 ~l~~~~~--ll~~~tGsGKT~~~~ 146 (282)
T 1rif_A 125 GLVNRRR--ILNLPTSAGRSLIQA 146 (282)
T ss_dssp HHHHSEE--EECCCTTSCHHHHHH
T ss_pred HHhcCCe--EEEcCCCCCcHHHHH
Confidence 4445444 338999999999874
No 177
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=46.63 E-value=1.5e+02 Score=27.71 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=7.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 002982 562 KKLRDEIKGKNDQIALLEKQI 582 (861)
Q Consensus 562 ~~l~~ei~~k~~qi~~le~~i 582 (861)
+..+.||.+.+++|..|+-.|
T Consensus 34 ~~~k~Ei~elrr~iq~L~~el 54 (131)
T 3tnu_A 34 QSGKSEISELRRTMQNLEIEL 54 (131)
T ss_dssp -------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555443
No 178
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=46.44 E-value=7.2 Score=45.61 Aligned_cols=26 Identities=27% Similarity=0.212 Sum_probs=17.7
Q ss_pred HHHhhcCCCeeEEEecccCCCCccccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
|..++..-. ..+-.|++|||||+|+.
T Consensus 198 V~~al~~~~-~~lI~GPPGTGKT~ti~ 223 (646)
T 4b3f_X 198 VLFALSQKE-LAIIHGPPGTGKTTTVV 223 (646)
T ss_dssp HHHHHHCSS-EEEEECCTTSCHHHHHH
T ss_pred HHHHhcCCC-ceEEECCCCCCHHHHHH
Confidence 444554333 34567999999999984
No 179
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=46.36 E-value=12 Score=39.48 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=16.2
Q ss_pred CeeEEEecccCCCCccccc
Q 002982 141 NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (861)
...++-||+.|+|||+++.
T Consensus 38 ~~~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp CSEEEEESCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4567899999999999874
No 180
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=46.15 E-value=8.3 Score=39.64 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=16.8
Q ss_pred cCCCeeEEEecccCCCCccccc
Q 002982 138 DGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 138 ~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.|.-..++-||++|+|||+...
T Consensus 39 ~~~~~~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 39 DGNMPHMIISGMPGIGKTTSVH 60 (323)
T ss_dssp SCCCCCEEEECSTTSSHHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHHH
Confidence 3433338889999999999874
No 181
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=46.07 E-value=6.2 Score=47.76 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=21.3
Q ss_pred HHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 130 QHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 130 ~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
..++..+..+....++-||++|+|||+.+.
T Consensus 180 ~~l~~~l~~~~~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 180 RRVIQILLRRTKNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp HHHHHHHHCSSCCCCEEEECTTSCHHHHHH
T ss_pred HHHHHHHhcCCCCceEEEcCCCCCHHHHHH
Confidence 344444445555567889999999999885
No 182
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=46.04 E-value=6.8 Score=42.05 Aligned_cols=19 Identities=37% Similarity=0.431 Sum_probs=16.0
Q ss_pred CeeEEEecccCCCCccccc
Q 002982 141 NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (861)
...|+-||++|+|||+...
T Consensus 51 ~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4568889999999999864
No 183
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=45.67 E-value=8.3 Score=37.50 Aligned_cols=29 Identities=24% Similarity=0.122 Sum_probs=20.1
Q ss_pred HHHHHhhc-CC--CeeEEEecccCCCCccccc
Q 002982 131 HVVSGAMD-GI--NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 131 plV~~vl~-Gy--N~tIfAYGqTGSGKTyTM~ 159 (861)
+.++.++. |+ ...+.-+|++|+|||+.+.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHH
Confidence 44566664 43 2356668999999998875
No 184
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=45.37 E-value=11 Score=45.74 Aligned_cols=51 Identities=20% Similarity=0.320 Sum_probs=36.3
Q ss_pred EeeceecCCCCcchhHHHHHHHHHHH-HhhcCCC----eeEEEecccCCCCccccc
Q 002982 109 YAYDRVFGPTTTTRHVYDIAAQHVVS-GAMDGIN----GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~-~vl~GyN----~tIfAYGqTGSGKTyTM~ 159 (861)
.+||.|-+-+..-+++.+.+.-|+.. .++.++. ..|+-||++|+|||+...
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAr 256 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHH
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHH
Confidence 56777776666666676666666653 4556554 469999999999998775
No 185
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=45.30 E-value=7.5 Score=40.42 Aligned_cols=25 Identities=28% Similarity=0.199 Sum_probs=17.3
Q ss_pred HHhhcCCCeeEEEecccCCCCccccc
Q 002982 134 SGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
..++.|. ..++..++||||||.+..
T Consensus 38 ~~~~~~~-~~~l~~~~TGsGKT~~~~ 62 (367)
T 1hv8_A 38 PLFLNDE-YNIVAQARTGSGKTASFA 62 (367)
T ss_dssp HHHHHTC-SEEEEECCSSSSHHHHHH
T ss_pred HHHhCCC-CCEEEECCCCChHHHHHH
Confidence 3445563 235678999999998753
No 186
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=44.87 E-value=7.9 Score=42.67 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=17.6
Q ss_pred HHhhcCCCeeEEEecccCCCCcccc
Q 002982 134 SGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
..++.|.+ +++.++||||||.+.
T Consensus 88 ~~i~~g~d--~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 88 PVISSGRD--LMACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHhcCCC--EEEECCCCCCchHHH
Confidence 34567766 577889999999864
No 187
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=44.72 E-value=4.9 Score=42.48 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=17.8
Q ss_pred HHHhhcCCCeeEEEecccCCCCcccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
+..++.|.+ ++..++||+|||.+.
T Consensus 52 i~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 52 IMPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 344566766 567799999999874
No 188
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=44.44 E-value=61 Score=29.33 Aligned_cols=33 Identities=30% Similarity=0.199 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhh
Q 002982 685 AAEIEELNRKVTELTEAKEQLELRNQKLSEESS 717 (861)
Q Consensus 685 ~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~ 717 (861)
-+--|++..++.+|.+....|..+|++|-.|++
T Consensus 60 RadREkl~~eKe~L~~ql~~lq~q~~~L~~~~~ 92 (94)
T 3jsv_C 60 RHAREKLVEKKEYLQEQLEQLQREFNKLKVGCH 92 (94)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455688889999999999999999999998875
No 189
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=43.97 E-value=8.7 Score=42.69 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhhHHH-HHHHHHHHHHHhhhhHH
Q 002982 793 LSREREVSYEAALLEKDQ-QEAELQRKVEESKKREA 827 (861)
Q Consensus 793 ~~~~re~~le~~l~ek~~-~e~el~~~~ee~k~~e~ 827 (861)
....++..++.++.+-.. -++++.++|.+....+.
T Consensus 516 ~~~~k~~~~~~~i~~i~~~~~~~~~~~i~~~q~~~~ 551 (556)
T 4a2p_A 516 CNRYKEEMMNKAVEKIQKWDEETFAKKIHNLQMKER 551 (556)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 344556667777666443 47788888888766543
No 190
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=43.76 E-value=34 Score=31.04 Aligned_cols=68 Identities=18% Similarity=0.338 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCccCcccccccccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHh
Q 002982 560 EIKKLRDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLNDALE 639 (861)
Q Consensus 560 ~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~ik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~~~ 639 (861)
.|+.|.+||..--.|+-+==|++.+....---..|- |=.--|++...+..-||.+|+.||+||+++..
T Consensus 6 ~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDe------------vNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDD------------VNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 377888888888888777777776655442211121 11233567788999999999999999998764
No 191
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=43.38 E-value=10 Score=26.97 Aligned_cols=17 Identities=47% Similarity=0.677 Sum_probs=10.0
Q ss_pred HHhHHhhhhhHHHHHHHHHH
Q 002982 613 LNQKICECEGLQETIGFLKQ 632 (861)
Q Consensus 613 l~~k~~e~~elqe~v~~l~q 632 (861)
|.|||.-|+. +|+-|+|
T Consensus 12 leqkcaaceq---kiaaleq 28 (32)
T 4g1a_A 12 LEQKCAACEQ---KIAALEQ 28 (32)
T ss_dssp HHHHTSSHHH---HHHHHC-
T ss_pred HHHHHHHHHH---HHHHHHH
Confidence 5577777763 6666554
No 192
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=43.35 E-value=8.9 Score=37.20 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=21.8
Q ss_pred HHHHHhhc-CCC--eeEEEecccCCCCccccc
Q 002982 131 HVVSGAMD-GIN--GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 131 plV~~vl~-GyN--~tIfAYGqTGSGKTyTM~ 159 (861)
+-++.++. |+. ..+.-+|++|+|||..+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHH
Confidence 45667775 553 467889999999998764
No 193
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=43.30 E-value=28 Score=28.16 Aligned_cols=40 Identities=38% Similarity=0.426 Sum_probs=30.9
Q ss_pred hhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHh
Q 002982 695 VTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLM 741 (861)
Q Consensus 695 ~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~ 741 (861)
.-+|.....+|-.+|.||++-- ..|-.||..|.+||.+|.
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L-------~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETL-------KEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhh
Confidence 3356677788889999998754 356679999999999884
No 194
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=43.02 E-value=20 Score=36.24 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=6.6
Q ss_pred HHHHHhHHhhhhhHHHHHHHHHHHH
Q 002982 610 QEQLNQKICECEGLQETIGFLKQQL 634 (861)
Q Consensus 610 qeql~~k~~e~~elqe~v~~l~qql 634 (861)
|+||.+-=..+..||-++..|.|||
T Consensus 12 q~ql~~ad~LV~~L~~En~~L~~ql 36 (190)
T 4emc_A 12 KQQIDSADLLVANLVNENFVLSEKL 36 (190)
T ss_dssp --------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 195
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=42.76 E-value=12 Score=43.64 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=18.9
Q ss_pred HHHhhcCCCeeEEEecccCCCCccccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
|..++.|.+ +++.++||+|||.+..
T Consensus 53 i~~il~g~d--~lv~~pTGsGKTl~~~ 77 (591)
T 2v1x_A 53 INVTMAGKE--VFLVMPTGGGKSLCYQ 77 (591)
T ss_dssp HHHHHTTCC--EEEECCTTSCTTHHHH
T ss_pred HHHHHcCCC--EEEEECCCChHHHHHH
Confidence 345567877 6778999999998643
No 196
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=42.29 E-value=46 Score=30.15 Aligned_cols=62 Identities=26% Similarity=0.292 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhHH---HHHHHHHHHHHhhhhcccCccCcccccccccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHH
Q 002982 558 QVEIKKLRDEIKGKN---DQIALLEKQIADSIMTSHNTMDNSEVSQVKAADNRIIQEQLNQKICECEGLQETIGFLKQQL 634 (861)
Q Consensus 558 ~~~~~~l~~ei~~k~---~qi~~le~~i~~s~~~s~~~~~~~~~~~ik~adnrilqeql~~k~~e~~elqe~v~~l~qql 634 (861)
|.+|.+|+.+|..++ .+|.+|++|+-=.-+.=.. -|-=-|-++ .|.++|++.+..|+.|+
T Consensus 22 q~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~a--------------ERadREkl~---~eKe~L~~ql~~lq~q~ 84 (94)
T 3jsv_C 22 QELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQA--------------ERHAREKLV---EKKEYLQEQLEQLQREF 84 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHH---HTTSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHH---hHHHHHHHHHHHHHHHH
Confidence 457899999998888 8999999987521111000 133334444 35677788888888775
Q ss_pred HH
Q 002982 635 ND 636 (861)
Q Consensus 635 ~~ 636 (861)
+.
T Consensus 85 ~~ 86 (94)
T 3jsv_C 85 NK 86 (94)
T ss_dssp C-
T ss_pred HH
Confidence 44
No 197
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=42.20 E-value=9.7 Score=42.15 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhhHHH-HHHHHHHHHHHhhhhHH
Q 002982 795 REREVSYEAALLEKDQ-QEAELQRKVEESKKREA 827 (861)
Q Consensus 795 ~~re~~le~~l~ek~~-~e~el~~~~ee~k~~e~ 827 (861)
..+|..++.++.+-+. -++++.++|++-+..|.
T Consensus 517 ~~~e~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 550 (555)
T 3tbk_A 517 MIKEKIMNESILRLQTWDEMKFGKTVHRIQVNEK 550 (555)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHH
Confidence 4445667777665544 37789999988866654
No 198
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=42.05 E-value=8.3 Score=44.98 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=16.1
Q ss_pred CeeEEEecccCCCCccccc
Q 002982 141 NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (861)
+..++..|++|||||+|+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVA 182 (608)
T ss_dssp BSEEEEECCTTSTHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHH
Confidence 3568889999999999974
No 199
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=41.79 E-value=80 Score=30.20 Aligned_cols=30 Identities=30% Similarity=0.431 Sum_probs=22.7
Q ss_pred HHHHHHHhhHHHHHHHhhhhhhHHHHHHhh
Q 002982 725 AAAVELKALSEEVAKLMNHKERLTAELAAA 754 (861)
Q Consensus 725 aaavelk~l~eevtkl~~qn~~l~~el~~~ 754 (861)
.+--|+..|-+|+..|-.++.+|.++|...
T Consensus 107 ~~~~e~~~l~~~~~~l~~~~~~le~~~~~~ 136 (138)
T 3hnw_A 107 SSAKEIKELKSEINKYQKNIVKLETELNDS 136 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344567778888888888888888888643
No 200
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=41.72 E-value=11 Score=39.95 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=17.6
Q ss_pred CCCeeEEEecccCCCCccccc
Q 002982 139 GINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 139 GyN~tIfAYGqTGSGKTyTM~ 159 (861)
..+..|+-||.+|+|||+...
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr 43 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVAR 43 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHH
T ss_pred CCCCcEEEECCCCchHHHHHH
Confidence 456788999999999998763
No 201
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=41.26 E-value=1.5e+02 Score=25.93 Aligned_cols=72 Identities=11% Similarity=0.209 Sum_probs=46.7
Q ss_pred ccchhhHHHHHHHHHHhhhhhhhhhhHHHHhHHHHhcCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 002982 514 IKTIDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIM 587 (861)
Q Consensus 514 ~~~~d~~dllreq~k~l~geva~~~s~lkrl~e~a~~~p~~~~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~ 587 (861)
.+|+| |.-|.+-.+-.-+......-=||--.++...||++-.- .=++.=..+++..+..|+-|.++|.+.+.
T Consensus 2 ~~M~~-l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK-~~~~~R~~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 2 SHMST-LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNK-STLQSRRAAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp ---CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555 44444444444444444445577888899999998764 33566677888888888888888887765
No 202
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=41.14 E-value=16 Score=35.84 Aligned_cols=31 Identities=19% Similarity=0.108 Sum_probs=20.0
Q ss_pred HHHHHHHhhc--CCCeeEEEecccCCCCccccc
Q 002982 129 AQHVVSGAMD--GINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 129 ~~plV~~vl~--GyN~tIfAYGqTGSGKTyTM~ 159 (861)
+..+++.+.. +-.-.|.-.|++|||||+.+.
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~ 40 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSN 40 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHH
Confidence 3444454442 333456668999999998874
No 203
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=40.56 E-value=11 Score=36.71 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=20.7
Q ss_pred HHHHHhhc-CCC--eeEEEecccCCCCccccc
Q 002982 131 HVVSGAMD-GIN--GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 131 plV~~vl~-GyN--~tIfAYGqTGSGKTyTM~ 159 (861)
+-++.++. |+. ..+.-+|++|||||..+.
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHHH
Confidence 45566663 442 456778999999998874
No 204
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=39.86 E-value=10 Score=41.78 Aligned_cols=23 Identities=26% Similarity=0.026 Sum_probs=17.1
Q ss_pred HhhcCCCeeEEEecccCCCCccccc
Q 002982 135 GAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 135 ~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.++.|.+ ++..|+||+|||++..
T Consensus 104 ~i~~~~~--~ll~~~TGsGKT~~~l 126 (472)
T 2fwr_A 104 RWLVDKR--GCIVLPTGSGKTHVAM 126 (472)
T ss_dssp HHTTTTE--EEEECCTTSCHHHHHH
T ss_pred HHHhcCC--EEEEeCCCCCHHHHHH
Confidence 4455544 6678999999999864
No 205
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=39.84 E-value=2.3e+02 Score=26.25 Aligned_cols=33 Identities=27% Similarity=0.269 Sum_probs=28.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 002982 783 SSLDLKRELALSREREVSYEAALLEKDQQEAEL 815 (861)
Q Consensus 783 ~~~~~~~el~~~~~re~~le~~l~ek~~~e~el 815 (861)
+++||-.=++..-+|-+-||.=|.||+.++.++
T Consensus 78 SLeD~E~k~n~aiErnalLE~El~EKe~L~~~~ 110 (111)
T 2v66_B 78 SLEDFEQRLNQAIERNAFLESELDEKESLLVSV 110 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 678888889999999999999999999887654
No 206
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=39.69 E-value=13 Score=41.34 Aligned_cols=37 Identities=14% Similarity=0.268 Sum_probs=25.1
Q ss_pred CCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 118 TTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 118 ~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
+..|..++..+.. .+..| ...++..|..|||||+++.
T Consensus 27 n~~Q~~av~~~~~----~i~~~-~~~~li~G~aGTGKT~ll~ 63 (459)
T 3upu_A 27 TEGQKNAFNIVMK----AIKEK-KHHVTINGPAGTGATTLTK 63 (459)
T ss_dssp CHHHHHHHHHHHH----HHHSS-SCEEEEECCTTSCHHHHHH
T ss_pred CHHHHHHHHHHHH----HHhcC-CCEEEEEeCCCCCHHHHHH
Confidence 3467777765432 22223 3478899999999999874
No 207
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=39.62 E-value=7.4 Score=41.88 Aligned_cols=19 Identities=37% Similarity=0.457 Sum_probs=16.3
Q ss_pred CeeEEEecccCCCCccccc
Q 002982 141 NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (861)
...|+-||++|+|||++..
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4568899999999999874
No 208
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=39.62 E-value=11 Score=40.38 Aligned_cols=24 Identities=17% Similarity=0.023 Sum_probs=18.0
Q ss_pred HHHhhcCCCeeEEEecccCCCCccccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
+..++.| .++..++||+|||.++.
T Consensus 18 i~~~~~~---~~ll~~~tG~GKT~~~~ 41 (494)
T 1wp9_A 18 YAKCKET---NCLIVLPTGLGKTLIAM 41 (494)
T ss_dssp HHHGGGS---CEEEECCTTSCHHHHHH
T ss_pred HHHHhhC---CEEEEcCCCCCHHHHHH
Confidence 4456777 44567999999999875
No 209
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=39.35 E-value=12 Score=37.50 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=18.8
Q ss_pred HHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 131 HVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 131 plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.+++++-.|-- +.-.|++|||||+.+.
T Consensus 14 ~~l~~i~~Ge~--~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 14 HYVDAIDTNTI--VFGLGPAGSGKTYLAM 40 (208)
T ss_dssp HHHHHHHHCSE--EEEECCTTSSTTHHHH
T ss_pred HHHHhccCCCE--EEEECCCCCCHHHHHH
Confidence 34555555544 4447999999999874
No 210
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=39.15 E-value=14 Score=44.69 Aligned_cols=52 Identities=19% Similarity=0.265 Sum_probs=37.1
Q ss_pred eEeeceecCCCCcchhHHHHHHHHHHH-HhhcC----CCeeEEEecccCCCCccccc
Q 002982 108 AYAYDRVFGPTTTTRHVYDIAAQHVVS-GAMDG----INGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 108 ~F~FD~VF~~~atQeeVY~~~~~plV~-~vl~G----yN~tIfAYGqTGSGKTyTM~ 159 (861)
.+.||.|.+.+..-+.+.+.+..|+.. .++.. ....|+-||++|+|||+.+.
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar 256 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHH
Confidence 478888888877777777766665553 23332 23468889999999998875
No 211
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=38.95 E-value=2.1e+02 Score=26.44 Aligned_cols=85 Identities=20% Similarity=0.298 Sum_probs=51.4
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcCCCcccccccccCCcccccccccCCCCChHHHHHHHHHHHHHHHHHHH
Q 002982 724 SAAAVELKALSEEVAKLMNHKERLTAELAAAKSSPTQRRTSAVRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSYEA 803 (861)
Q Consensus 724 saaavelk~l~eevtkl~~qn~~l~~el~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~el~~~~~re~~le~ 803 (861)
+.---+|..|-..|--+..+|++|..|+..++. .++|+| .+++-|.+
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~--------------------------~~edfk----~KyE~E~~--- 62 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAE--------------------------DIMRLR----EKLQEEML--- 62 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHH----HHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHH----HhhHHHHH---
Confidence 333456778888888888999999999987763 233333 23333322
Q ss_pred HHhhHHHHHHH---HHHHHHHhhhhHHHHHhhhhhHHHHHHHhh
Q 002982 804 ALLEKDQQEAE---LQRKVEESKKREAYLENELANMWVLVAKLK 844 (861)
Q Consensus 804 ~l~ek~~~e~e---l~~~~ee~k~~e~~lenelanmwvlvaklk 844 (861)
.+...|++ |+|-+|++--.-.+||+.+..+=-=+.=||
T Consensus 63 ---~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLK 103 (119)
T 3ol1_A 63 ---QREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 103 (119)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333443 566777777777777776665533333333
No 212
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=38.63 E-value=8.1 Score=37.02 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=14.5
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.+.-.|++|||||+.+.
T Consensus 11 i~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45678999999999986
No 213
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=38.59 E-value=88 Score=25.12 Aligned_cols=56 Identities=18% Similarity=0.282 Sum_probs=39.8
Q ss_pred chhhHHHHHHHHHHhhhhhhhhhhHHHHhHHHHhcCCChHHHHHHHHHHHHHHHhHHHHHHH
Q 002982 516 TIDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIAL 577 (861)
Q Consensus 516 ~~d~~dllreq~k~l~geva~~~s~lkrl~e~a~~~p~~~~~~~~~~~l~~ei~~k~~qi~~ 577 (861)
+.+++.-|.+.+..+.|++....+.+.-+.... .+.-..++...++|..++.||..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~------~~~~~~l~~~~~~I~~~k~qi~~ 58 (60)
T 3htk_A 3 FANTKKTLENQVEELTEKCSLKTDEFLKAKEKI------NEIFEKLNTIRDEVIKKKNQNEY 58 (60)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888999999999999998777765554333 23334567777777777777654
No 214
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=38.42 E-value=13 Score=42.46 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=19.6
Q ss_pred HHHHhhcCCCeeEEEecccCCCCcccc
Q 002982 132 VVSGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
+|..++.|-+.-+++.++||||||.+.
T Consensus 51 ~i~~il~~~~~dvlv~apTGsGKTl~~ 77 (579)
T 3sqw_A 51 TIKPILSSEDHDVIARAKTGTGKTFAF 77 (579)
T ss_dssp HHHHHHCSSSEEEEEECCTTSCHHHHH
T ss_pred HHHHHHccCCCeEEEEcCCCcHHHHHH
Confidence 344556555556788999999999874
No 215
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=38.24 E-value=16 Score=38.84 Aligned_cols=18 Identities=33% Similarity=0.564 Sum_probs=15.1
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..|.-.|++|||||.++.
T Consensus 101 ~vi~lvG~nGsGKTTll~ 118 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLG 118 (302)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHH
Confidence 356678999999999985
No 216
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=38.20 E-value=11 Score=43.62 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=18.7
Q ss_pred HHHhhcCCCeeEEEecccCCCCccccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
|..++.|.| ++..++||+|||.+..
T Consensus 16 i~~il~g~~--~ll~~~TGsGKTl~~~ 40 (699)
T 4gl2_A 16 AQPALEGKN--IIICLPTGCGKTRVAV 40 (699)
T ss_dssp HHHHHSSCC--EEECCCTTSCHHHHHH
T ss_pred HHHHHhCCC--EEEEcCCCCcHHHHHH
Confidence 344566766 5678999999998764
No 217
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=38.06 E-value=11 Score=41.96 Aligned_cols=25 Identities=12% Similarity=-0.025 Sum_probs=19.0
Q ss_pred HHHhhcCCCeeEEEecccCCCCcccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
+..++.|.+. ++..|+||||||.+.
T Consensus 12 i~~~l~~~~~-~lv~a~TGsGKT~~~ 36 (451)
T 2jlq_A 12 DEDIFRKKRL-TIMDLHPGAGKTKRI 36 (451)
T ss_dssp CGGGGSTTCE-EEECCCTTSSCCTTH
T ss_pred HHHHHhcCCe-EEEECCCCCCHhhHH
Confidence 4556778664 567899999999873
No 218
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=37.88 E-value=9.1 Score=35.20 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=14.1
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.|+-.|.+|||||+...
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47788999999998653
No 219
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=37.86 E-value=15 Score=43.26 Aligned_cols=45 Identities=27% Similarity=0.315 Sum_probs=30.8
Q ss_pred EeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
|.|.. |.|...|..-+.. ++..+-.|... ....|.|||||||||-
T Consensus 2 ~~~~~-~~~~~~q~~ai~~----l~~~~~~~~~~-~~l~g~tgs~kt~~~a 46 (664)
T 1c4o_A 2 FRYRG-PSPKGDQPKAIAG----LVEALRDGERF-VTLLGATGTGKTVTMA 46 (664)
T ss_dssp CCCCS-CCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHH
T ss_pred CCCCC-CCCCCCChHHHHH----HHHHHhcCCCc-EEEEcCCCcHHHHHHH
Confidence 44444 3788888777664 45555566533 3457999999999995
No 220
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=37.79 E-value=13 Score=42.58 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=19.0
Q ss_pred HHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 132 VVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
++..++.| ..|+-||++|+|||+...
T Consensus 34 l~~al~~~--~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 34 CLLAALSG--ESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp HHHHHHHT--CEEEEECCSSSSHHHHHH
T ss_pred HHHHHhcC--CeeEeecCchHHHHHHHH
Confidence 33444455 367889999999999874
No 221
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=37.73 E-value=11 Score=43.85 Aligned_cols=18 Identities=28% Similarity=0.228 Sum_probs=15.1
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..++..|++|||||+|+.
T Consensus 196 ~~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp SEEEEECCTTSCHHHHHH
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 456779999999999974
No 222
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=37.27 E-value=17 Score=35.46 Aligned_cols=19 Identities=26% Similarity=0.230 Sum_probs=15.5
Q ss_pred CeeEEEecccCCCCccccc
Q 002982 141 NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (861)
...|.-.|.+|||||+.+.
T Consensus 22 ~~~i~i~G~~GsGKstl~~ 40 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLAN 40 (201)
T ss_dssp SEEEEEEECTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3567788999999998864
No 223
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=36.53 E-value=2.6e+02 Score=25.90 Aligned_cols=18 Identities=11% Similarity=0.231 Sum_probs=9.9
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 002982 619 ECEGLQETIGFLKQQLND 636 (861)
Q Consensus 619 e~~elqe~v~~l~qql~~ 636 (861)
+...+|.+|..|+.+|..
T Consensus 76 ~l~~~q~~i~~lE~eL~~ 93 (129)
T 3tnu_B 76 ALKDARNKLAELEEALQK 93 (129)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHH
Confidence 444555566666665544
No 224
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=36.36 E-value=19 Score=42.76 Aligned_cols=29 Identities=17% Similarity=0.136 Sum_probs=20.9
Q ss_pred HHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 131 HVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 131 plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.++..+..+....|+-||++|+|||....
T Consensus 191 ~l~~~l~~~~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp HHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred HHHHHHhCCCCCCeEEECCCCCCHHHHHH
Confidence 33444444555668889999999998864
No 225
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=36.27 E-value=12 Score=36.86 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=18.6
Q ss_pred HHHhhc-CC--CeeEEEecccCCCCccccc
Q 002982 133 VSGAMD-GI--NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 133 V~~vl~-Gy--N~tIfAYGqTGSGKTyTM~ 159 (861)
++.++. |+ ...+.-+|++|+|||..+.
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~ 41 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQ 41 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHH
Confidence 455543 33 3456779999999999854
No 226
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=36.16 E-value=35 Score=30.21 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHH
Q 002982 685 AAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAA 726 (861)
Q Consensus 685 ~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaa 726 (861)
-.|+++|..++..+.++-..|...|+-|.|=|..|+-||+..
T Consensus 37 L~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la~~i 78 (83)
T 1wlq_A 37 LKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVI 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348999999999999999999999999988888888888753
No 227
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=35.95 E-value=11 Score=43.48 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=17.2
Q ss_pred CCeeEEEecccCCCCccccc
Q 002982 140 INGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM~ 159 (861)
.++.++..|..|||||+|+.
T Consensus 21 ~~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 21 PRSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp CSSCEEEEECTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHH
Confidence 46678889999999999985
No 228
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=35.69 E-value=9 Score=41.62 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=14.3
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
.-++..|+||||||++|.
T Consensus 36 ~~~~i~G~~G~GKs~~~~ 53 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAK 53 (392)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 335567999999999884
No 229
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=35.64 E-value=20 Score=38.65 Aligned_cols=18 Identities=39% Similarity=0.449 Sum_probs=15.2
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..|.-.|++|+|||.|+.
T Consensus 130 ~vi~lvG~nGaGKTTll~ 147 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIA 147 (328)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 456678999999999985
No 230
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=35.52 E-value=14 Score=42.90 Aligned_cols=23 Identities=35% Similarity=0.341 Sum_probs=17.3
Q ss_pred HHhhcCCCeeEEEecccCCCCcccc
Q 002982 134 SGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
..++.|.| ++..++||+|||...
T Consensus 23 ~~~l~g~~--~iv~~~TGsGKTl~~ 45 (696)
T 2ykg_A 23 LPAMKGKN--TIICAPTGCGKTFVS 45 (696)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHcCCC--EEEEcCCCchHHHHH
Confidence 34567776 467889999999864
No 231
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=35.32 E-value=1.7e+02 Score=25.61 Aligned_cols=86 Identities=23% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHhhhhhhHHHHHHhhcCCCcccccccccCCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhH
Q 002982 729 ELKALSEEVAKLMNHKERLTAELAAAKSSPTQRRTSAVRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSYEAALLEK 808 (861)
Q Consensus 729 elk~l~eevtkl~~qn~~l~~el~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~el~~~~~re~~le~~l~ek 808 (861)
|+..|-..|-.|..+|++|..|+..++. .++++|.-...-..+-...|+-+
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~--------------------------~~edfk~KyE~E~~~R~~~E~d~--- 51 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAE--------------------------DIMRLREKLQEEMLQREEAENTL--- 51 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHH---
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHhhhcC
Q 002982 809 DQQEAELQRKVEESKKREAYLENELANMWVLVAKLKKSH 847 (861)
Q Consensus 809 ~~~e~el~~~~ee~k~~e~~lenelanmwvlvaklkk~~ 847 (861)
.-|+|-+|++----.+||..+.++===++=|||-+
T Consensus 52 ----~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk~h 86 (86)
T 3swk_A 52 ----QSFRQDVDNASLARLDLERKVESLQEEIAFLKKLH 86 (86)
T ss_dssp ----HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ----HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 232
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=35.23 E-value=11 Score=42.36 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=20.6
Q ss_pred hhcCCCeeEEEecccCCCCccccc
Q 002982 136 AMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 136 vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
++.|++..|...|++|+|||..|.
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLln 49 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLIN 49 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHHH
Confidence 688999999999999999998763
No 233
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=34.89 E-value=21 Score=42.43 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=15.2
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.|+-||++|+|||+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68999999999999864
No 234
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=34.74 E-value=24 Score=29.45 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=24.2
Q ss_pred HHHhhHHHHHHHhhhhhhHHHHHHhhcCCC
Q 002982 729 ELKALSEEVAKLMNHKERLTAELAAAKSSP 758 (861)
Q Consensus 729 elk~l~eevtkl~~qn~~l~~el~~~~~~~ 758 (861)
.+..|..+|..|..+|+.|.+++...+..-
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788889999999999999998887644
No 235
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=34.72 E-value=1.4e+02 Score=28.02 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=43.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHh
Q 002982 783 SSLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESKKREAYLENELANMWVLVAKL 843 (861)
Q Consensus 783 ~~~~~~~el~~~~~re~~le~~l~ek~~~e~el~~~~ee~k~~e~~lenelanmwvlvakl 843 (861)
.+..|..|+..-+-.-++||++|.+-++ .+...++....+=..||.+|+.+|.=.+..
T Consensus 46 ~iq~L~~el~~l~~~~~sLE~~l~e~e~---~~~~~l~~~q~~i~~lE~eL~~~r~em~~q 103 (131)
T 3tnu_A 46 TMQNLEIELQSQLSMKASLENSLEETKG---RYCMQLAQIQEMIGSVEEQLAQLRCEMEQQ 103 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888887788899999988654 345556666777788999999988765543
No 236
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=34.68 E-value=10 Score=36.53 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=13.7
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.|.-.|++|||||+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~ 25 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVR 25 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 45557999999999874
No 237
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=34.65 E-value=75 Score=28.99 Aligned_cols=52 Identities=19% Similarity=0.374 Sum_probs=35.0
Q ss_pred HHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhc
Q 002982 690 ELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAK 755 (861)
Q Consensus 690 ~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~~~~ 755 (861)
+|..++.++.+++..|...+. .. .+-+..|+.||-+|.-+|.+|-.|=..-+
T Consensus 41 ~LE~~~s~le~e~~rlr~~~~----------~~----~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 41 ELEKSLSRMEDENNRLRLESK----------RL----DARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----------HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc----------cc----hhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455555555555554422 22 46678899999999999999987766544
No 238
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=34.34 E-value=2e+02 Score=26.08 Aligned_cols=73 Identities=11% Similarity=0.209 Sum_probs=48.5
Q ss_pred ccchhhHHHHHHHHHHhhhhhhhhhhHHHHhHHHHhcCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhc
Q 002982 514 IKTIDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMT 588 (861)
Q Consensus 514 ~~~~d~~dllreq~k~l~geva~~~s~lkrl~e~a~~~p~~~~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~ 588 (861)
.+|+| |.-|.+-.+-.-+......-=||--.++...||++-.- .=++.=..+++..+..|+-|.++|.+.+..
T Consensus 2 ~~M~~-i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk-~~~~~R~~~V~~lq~Ki~elkr~lAd~v~~ 74 (96)
T 2ic9_A 2 SHMST-LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNK-STLQSRRAAVSALETKLGELKRELADLIAA 74 (96)
T ss_dssp --CCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455 44444444444444444455577888899999998764 335666778888888888888888887764
No 239
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=34.28 E-value=18 Score=42.93 Aligned_cols=29 Identities=14% Similarity=0.116 Sum_probs=21.0
Q ss_pred HHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 131 HVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 131 plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.+++.+.......++-||++|+|||+.+.
T Consensus 197 ~l~~~l~~~~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 197 RAIQVLCRRRKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSSHHHHHH
T ss_pred HHHHHHhccCCCCeEEEcCCCCCHHHHHH
Confidence 34444444555667889999999999875
No 240
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=34.17 E-value=23 Score=42.91 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=15.9
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
+.|+-||++|+|||++..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~ 606 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAK 606 (854)
T ss_dssp EEEEEBSCSSSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 689999999999999863
No 241
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=34.12 E-value=12 Score=36.91 Aligned_cols=18 Identities=22% Similarity=0.152 Sum_probs=14.6
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..|.-.|++|||||.++.
T Consensus 9 ~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred cEEEEECcCCCCHHHHHH
Confidence 356668999999999874
No 242
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=33.55 E-value=11 Score=39.86 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=17.4
Q ss_pred hhcCCCeeEEEecccCCCCccccc
Q 002982 136 AMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 136 vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
++.|++..|...|++|+|||..|.
T Consensus 13 ~l~~~~~~I~lvG~nG~GKSTLl~ 36 (301)
T 2qnr_A 13 VKKGFEFTLMVVGESGLGKSTLIN 36 (301)
T ss_dssp -----CEEEEEEEETTSSHHHHHH
T ss_pred EEcCCCEEEEEECCCCCCHHHHHH
Confidence 678999999999999999998774
No 243
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=33.42 E-value=31 Score=30.58 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhh
Q 002982 685 AAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKG 721 (861)
Q Consensus 685 ~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~ 721 (861)
-.|+++|.+++..|.|+...|...|+.|.+=+..++-
T Consensus 45 L~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q~ 81 (83)
T 1uii_A 45 LKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQY 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3488999999999999998888888766544444433
No 244
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=33.34 E-value=9.5 Score=41.92 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=15.7
Q ss_pred CeeEEEecccCCCCcccc
Q 002982 141 NGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM 158 (861)
+.-++.+|.||||||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 466788999999999997
No 245
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=32.89 E-value=10 Score=39.27 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=16.4
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..||..|..|+||||+|.
T Consensus 7 l~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAML 24 (228)
T ss_dssp EEEEEESSTTSSHHHHHH
T ss_pred EEEEEECCCCCcHHHHHH
Confidence 568999999999999986
No 246
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=32.85 E-value=11 Score=36.40 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=13.7
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.|.-.|++|||||+++.
T Consensus 3 ii~l~GpsGaGKsTl~~ 19 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLK 19 (186)
T ss_dssp CEEEESSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 34557999999999874
No 247
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=32.73 E-value=16 Score=41.42 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=16.4
Q ss_pred CeeEEEecccCCCCccccc
Q 002982 141 NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (861)
...|+-||++|+|||++..
T Consensus 77 ~~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3578889999999999875
No 248
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=32.66 E-value=12 Score=35.58 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=15.0
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..|.-.|++|||||+.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~ 27 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAE 27 (191)
T ss_dssp EEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457778999999999874
No 249
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=32.40 E-value=3.6e+02 Score=26.30 Aligned_cols=38 Identities=21% Similarity=0.124 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhh
Q 002982 788 KRELALSREREVSYEAALLEKDQQEAELQRKVEESKKR 825 (861)
Q Consensus 788 ~~el~~~~~re~~le~~l~ek~~~e~el~~~~ee~k~~ 825 (861)
+++-..-..|-..|+..|.+++-+=.-|+..+-+-|.-
T Consensus 107 r~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v 144 (154)
T 2ocy_A 107 RKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKV 144 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555566667777777777666666666665543
No 250
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=32.07 E-value=13 Score=34.83 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=14.7
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..|+-.|.+|||||+...
T Consensus 3 ~~I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEecCCCCCHHHHHH
Confidence 357889999999998653
No 251
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=32.02 E-value=1.6e+02 Score=27.40 Aligned_cols=57 Identities=18% Similarity=0.243 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHh
Q 002982 784 SLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESKKREAYLENELANMWVLVAKL 843 (861)
Q Consensus 784 ~~~~~~el~~~~~re~~le~~l~ek~~~e~el~~~~ee~k~~e~~lenelanmwvlvakl 843 (861)
+..|..|+..-+-.-++||++|.+-+++ +...+.....+=..||.+|+.++.=.+..
T Consensus 45 iq~L~~el~~l~~~~~~LE~~l~e~e~~---~~~~l~~~q~~i~~lE~eL~~~r~e~~~q 101 (129)
T 3tnu_B 45 IQRLRAEIDNVKKQCANLQNAIADAEQR---GELALKDARNKLAELEEALQKAKQDMARL 101 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4566777777777778999999876543 44455666666778999998887655543
No 252
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=32.01 E-value=12 Score=39.13 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=16.5
Q ss_pred CCeeEEEecccCCCCccccc
Q 002982 140 INGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM~ 159 (861)
|+-+|...|++|+|||..|-
T Consensus 1 f~f~v~lvG~nGaGKSTLln 20 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLVN 20 (270)
T ss_dssp CEEEEEEEESSSSSHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHH
Confidence 45678889999999998873
No 253
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=31.95 E-value=19 Score=38.06 Aligned_cols=18 Identities=39% Similarity=0.577 Sum_probs=14.9
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..|.-.|++|+|||+|+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 356667999999999985
No 254
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=31.84 E-value=12 Score=36.00 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=14.0
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.|.-.|++|||||..+.
T Consensus 7 ~i~i~GpsGsGKSTL~~ 23 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKN 23 (180)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45667999999998874
No 255
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=31.63 E-value=24 Score=38.65 Aligned_cols=18 Identities=33% Similarity=0.564 Sum_probs=15.3
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..|.-.|++|||||.|+.
T Consensus 158 ~vi~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLG 175 (359)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred eEEEEEcCCCChHHHHHH
Confidence 357778999999999985
No 256
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=30.87 E-value=23 Score=42.01 Aligned_cols=18 Identities=33% Similarity=0.434 Sum_probs=15.9
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
+.|+-||++|+|||++..
T Consensus 489 ~~~ll~G~~GtGKT~la~ 506 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTV 506 (758)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 578999999999999874
No 257
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=30.72 E-value=3.1e+02 Score=24.92 Aligned_cols=55 Identities=20% Similarity=0.256 Sum_probs=42.4
Q ss_pred HHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHh
Q 002982 687 EIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLM 741 (861)
Q Consensus 687 e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~ 741 (861)
+.+.||.+..+|...+...+....+|.++..-.+.+-..|=-+++.+..||--|+
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888888888777777777777777777777776554
No 258
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=30.70 E-value=57 Score=27.82 Aligned_cols=39 Identities=33% Similarity=0.415 Sum_probs=31.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 002982 783 SSLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEE 821 (861)
Q Consensus 783 ~~~~~~~el~~~~~re~~le~~l~ek~~~e~el~~~~ee 821 (861)
..+++...++.+.+|=..||+.|-+|+..=++|+..++.
T Consensus 12 ~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK 50 (67)
T 1zxa_A 12 LEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHK 50 (67)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999988874
No 259
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=30.69 E-value=4.1e+02 Score=26.34 Aligned_cols=136 Identities=17% Similarity=0.078 Sum_probs=82.1
Q ss_pred hhhHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhhhhccccccccchhhhhhhhhhhhhH--HHHH
Q 002982 606 NRIIQEQLNQKICECEGLQETIGFLKQQLNDALELRNFSPLASYSQRFAEAKSLNGEHQIDKEIALLKDINEDS--RLQV 683 (861)
Q Consensus 606 nrilqeql~~k~~e~~elqe~v~~l~qql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 683 (861)
+..||-||..=..-|.--.|+++.||.|...+...... .-+.+....+.. .......+.+ .+..
T Consensus 8 i~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~-----~E~~~rELq~~~---------~~L~~~k~~Leke~~~ 73 (168)
T 3o0z_A 8 LSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQ-----LESLNRELQERN---------RILENSKSQTDKDYYQ 73 (168)
T ss_dssp --CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH---------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH---------HHHHHHHHHHHHHHHH
Confidence 46778888887777777788888888887665432100 000000000000 0000001111 0001
Q ss_pred HHHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHH----HHHHhhc
Q 002982 684 QAAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLT----AELAAAK 755 (861)
Q Consensus 684 q~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~----~el~~~~ 755 (861)
-++..+.=+-...+-+|.-..|+.|++=|.+|.-+-|.-=+.+-.|-+.|.|.|+-|-.+.+-+. =||-+++
T Consensus 74 LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ 149 (168)
T 3o0z_A 74 LQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQ 149 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 12233333444456666677889999999999999999999999999999999999998888887 4455544
No 260
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=30.51 E-value=14 Score=41.15 Aligned_cols=16 Identities=19% Similarity=0.046 Sum_probs=13.6
Q ss_pred EEEecccCCCCccccc
Q 002982 144 IFAYGVTSSGKTHTMH 159 (861)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (861)
++..|+||+|||.+..
T Consensus 131 ~ll~~~tGsGKT~~~~ 146 (510)
T 2oca_A 131 RILNLPTSAGRSLIQA 146 (510)
T ss_dssp EEEECCSTTTHHHHHH
T ss_pred cEEEeCCCCCHHHHHH
Confidence 4668999999999875
No 261
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=30.46 E-value=2.2e+02 Score=27.34 Aligned_cols=108 Identities=19% Similarity=0.145 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhHHHHHHhhcCCCccccc
Q 002982 684 QAAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERLTAELAAAKSSPTQRRT 763 (861)
Q Consensus 684 q~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l~~el~~~~~~~~~~~~ 763 (861)
...+.+.|+.+..+|.......+....+|.++..-.+.+-..|=-+++.+..||--|+..==--+++.-
T Consensus 23 ~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MV----------- 91 (135)
T 2e7s_A 23 AIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLV----------- 91 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 455667777777777766666666777777777766777777777777777777655432111111111
Q ss_pred ccccCCcccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q 002982 764 SAVRNGRRDGQIKRQNQDGSSLDLKRELALSREREVSYEAALLEKDQQEAELQRKVEESK 823 (861)
Q Consensus 764 ~~~~~~r~~~~~~~~~~~~~~~~~~~el~~~~~re~~le~~l~ek~~~e~el~~~~ee~k 823 (861)
.+=+++-..-..|-..|+..|.+|+-+=+-++..+-+-|
T Consensus 92 ---------------------a~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK 130 (135)
T 2e7s_A 92 ---------------------ADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLK 130 (135)
T ss_dssp ---------------------HHTTHHHHHHHHHHHHHHHTTTHHHHCC-----------
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111344445555666777777777766666655555444
No 262
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=30.43 E-value=18 Score=42.01 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=15.8
Q ss_pred CeeEEEecccCCCCccccc
Q 002982 141 NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (861)
+..++..|..|||||+++.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~ 222 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTK 222 (574)
T ss_dssp CSEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHH
Confidence 3567779999999999984
No 263
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=30.37 E-value=14 Score=35.07 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=14.2
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.|+-.|.+|||||+.-.
T Consensus 7 ~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57789999999998653
No 264
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=29.82 E-value=20 Score=43.40 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=19.7
Q ss_pred HHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 132 VVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
+..++-.|....++..|+||||||....
T Consensus 380 I~~~l~~~~~~~~Ll~a~TGSGKTlval 407 (780)
T 1gm5_A 380 IRNDMISEKPMNRLLQGDVGSGKTVVAQ 407 (780)
T ss_dssp HHHHHHSSSCCCCEEECCSSSSHHHHHH
T ss_pred HHhhccccCCCcEEEEcCCCCCHHHHHH
Confidence 3334444555567889999999998764
No 265
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=29.77 E-value=13 Score=36.59 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=14.2
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.+.-.|++|||||..+.
T Consensus 6 ~i~lvGpsGaGKSTLl~ 22 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLK 22 (198)
T ss_dssp CEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45667999999999885
No 266
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=29.58 E-value=18 Score=43.76 Aligned_cols=18 Identities=28% Similarity=0.228 Sum_probs=15.1
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..++..|++|||||+|+.
T Consensus 376 ~~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred CCEEEECCCCCCHHHHHH
Confidence 346779999999999985
No 267
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=29.43 E-value=21 Score=44.16 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=17.2
Q ss_pred HHHhhcCCCeeEEEecccCCCCccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHT 157 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyT 157 (861)
|..++.|. .++..|+||||||.+
T Consensus 48 I~~il~g~--~vlv~apTGsGKTlv 70 (997)
T 4a4z_A 48 VYHLEQGD--SVFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHTTC--EEEEECCTTSCSHHH
T ss_pred HHHHHcCC--CEEEEECCCCcHHHH
Confidence 34556675 477899999999964
No 268
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=29.37 E-value=14 Score=36.44 Aligned_cols=17 Identities=35% Similarity=0.403 Sum_probs=14.0
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.+.-+|++|||||..+.
T Consensus 32 ~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 45568999999999874
No 269
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=29.35 E-value=43 Score=35.28 Aligned_cols=37 Identities=32% Similarity=0.445 Sum_probs=26.7
Q ss_pred HHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhhhhhH
Q 002982 697 ELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHKERL 747 (861)
Q Consensus 697 ~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~qn~~l 747 (861)
+|..+.++|..+|.||.+ +||+|-.||.+|..|+++|
T Consensus 58 eL~~ql~~L~arNe~L~~--------------~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLME--------------TLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHTTTHHHHHH--------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHh
Confidence 455666778888888765 4777777887777777776
No 270
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=29.27 E-value=15 Score=34.53 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=15.2
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..|+-.|.+|||||+...
T Consensus 4 ~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468889999999998764
No 271
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=29.18 E-value=23 Score=36.62 Aligned_cols=18 Identities=17% Similarity=0.349 Sum_probs=16.1
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..++-||+.|+|||..+.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~ 49 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLR 49 (350)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcCCHHHHHH
Confidence 678889999999999885
No 272
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=29.12 E-value=40 Score=35.64 Aligned_cols=17 Identities=41% Similarity=0.542 Sum_probs=14.2
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.|...|.+|+|||+++.
T Consensus 100 vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEECSSCSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 55667999999999885
No 273
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=29.06 E-value=19 Score=43.56 Aligned_cols=18 Identities=28% Similarity=0.228 Sum_probs=15.2
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..++..|++|||||+|+.
T Consensus 372 ~~~lI~GppGTGKT~ti~ 389 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSA 389 (800)
T ss_dssp SEEEEECCTTSCHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHH
Confidence 456779999999999985
No 274
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=29.05 E-value=16 Score=38.99 Aligned_cols=18 Identities=33% Similarity=0.541 Sum_probs=14.9
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..|.-.|++|||||.++.
T Consensus 103 ~vi~lvG~nGsGKTTll~ 120 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIA 120 (304)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 356667999999999985
No 275
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=28.96 E-value=14 Score=35.40 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=14.1
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.|.-.|++|||||+.+.
T Consensus 8 ~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56678999999998874
No 276
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=28.86 E-value=13 Score=36.16 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=13.5
Q ss_pred EEEecccCCCCccccc
Q 002982 144 IFAYGVTSSGKTHTMH 159 (861)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (861)
+.-.|++|||||+.+.
T Consensus 3 i~l~G~nGsGKTTLl~ 18 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVK 18 (178)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 4558999999999874
No 277
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=28.75 E-value=27 Score=36.83 Aligned_cols=37 Identities=19% Similarity=0.080 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHhh--cCCCeeEEEecccCCCCccccc
Q 002982 123 HVYDIAAQHVVSGAM--DGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 123 eVY~~~~~plV~~vl--~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.+++.++..+..... .+-...|.-.|.+|||||+.+.
T Consensus 11 ~~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~ 49 (290)
T 1odf_A 11 YTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSI 49 (290)
T ss_dssp HHHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHH
Confidence 344444444443212 2334566678999999998873
No 278
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=28.74 E-value=21 Score=42.66 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhhHHH-HHHHHHHHHHHhhhhHH
Q 002982 794 SREREVSYEAALLEKDQ-QEAELQRKVEESKKREA 827 (861)
Q Consensus 794 ~~~re~~le~~l~ek~~-~e~el~~~~ee~k~~e~ 827 (861)
...|+..++.++.+-.. -++++.++|.+....+.
T Consensus 758 ~~~ke~~~~~~i~~l~~~~~~~~~~~i~~lq~~~~ 792 (797)
T 4a2q_A 758 NRYKEEMMNKAVEKIQKWDEETFAKKIHNLQMKER 792 (797)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 34456666666655332 46789999988766554
No 279
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=28.21 E-value=15 Score=34.84 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=15.1
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..|+..|.+|||||+...
T Consensus 12 ~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHH
Confidence 357889999999998764
No 280
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=28.19 E-value=17 Score=42.57 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=17.5
Q ss_pred CCeeEEEecccCCCCccccc
Q 002982 140 INGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM~ 159 (861)
.++.++..|..|||||+||.
T Consensus 14 ~~~~~lV~AgaGSGKT~~l~ 33 (673)
T 1uaa_A 14 VTGPCLVLAGAGSGKTRVIT 33 (673)
T ss_dssp CSSEEEECCCTTSCHHHHHH
T ss_pred CCCCEEEEeCCCCChHHHHH
Confidence 46788889999999999995
No 281
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=28.12 E-value=2.2e+02 Score=24.77 Aligned_cols=30 Identities=27% Similarity=0.426 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 002982 555 EQLQVEIKKLRDEIKGKNDQIALLEKQIAD 584 (861)
Q Consensus 555 ~~~~~~~~~l~~ei~~k~~qi~~le~~i~~ 584 (861)
.+.|-+++.|.++|...-.+|..|+.+|.+
T Consensus 18 ykeqrEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 18 YKLQRELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456678889999999999999999998875
No 282
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=28.01 E-value=1.3e+02 Score=23.25 Aligned_cols=25 Identities=40% Similarity=0.508 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhhhHHHHHhhhhhHH
Q 002982 813 AELQRKVEESKKREAYLENELANMW 837 (861)
Q Consensus 813 ~el~~~~ee~k~~e~~lenelanmw 837 (861)
+.|++|-=--|--=||||.|+||+-
T Consensus 20 etlkkknlhkkdliaylekeianlr 44 (49)
T 3he5_A 20 ETLKKKNLHKKDLIAYLEKEIANLR 44 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHH
Confidence 4455555555666799999999964
No 283
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=27.96 E-value=15 Score=35.10 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=14.1
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.|.-.|++|||||+++.
T Consensus 4 ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 45668999999999874
No 284
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=27.90 E-value=29 Score=41.45 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHh-hcCCCeeEEEecccCCCCcccc
Q 002982 123 HVYDIAAQHVVSGA-MDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 123 eVY~~~~~plV~~v-l~GyN~tIfAYGqTGSGKTyTM 158 (861)
.||..+ ......+ -.+.|.||+.-|.+|||||.+.
T Consensus 76 HifaiA-~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 76 HMYALA-NDAYRSMRQSQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp CHHHHH-HHHHHHHHHHCCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHH-HHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 566533 2223333 4799999999999999999875
No 285
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=27.89 E-value=18 Score=35.96 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=9.7
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.|.-.|++|||||.++.
T Consensus 29 ii~l~Gp~GsGKSTl~~ 45 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVAN 45 (231)
T ss_dssp EEEEECSCC----CHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 34557999999999874
No 286
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=27.65 E-value=1.3e+02 Score=24.61 Aligned_cols=52 Identities=31% Similarity=0.424 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHhhhh-----hhhhhhHHHHhHHHHhcCCChHHHHHHHHHHHHHHHh
Q 002982 519 QIDLLREQQKILAGE-----VALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKG 570 (861)
Q Consensus 519 ~~dllreq~k~l~ge-----va~~~s~lkrl~e~a~~~p~~~~~~~~~~~l~~ei~~ 570 (861)
.+.-|.|.||.|-|- .--.---||.-+|+-+---+--++..++++|+.||+.
T Consensus 10 kvkaleekvkalggggrieelkkkweelkkkieelggggevkkveeevkkleeeikk 66 (67)
T 1lq7_A 10 KVKALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIKK 66 (67)
T ss_dssp HHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhc
Confidence 355677777777653 2233346788888888888888888999999999873
No 287
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=27.64 E-value=21 Score=43.69 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=18.0
Q ss_pred HHhhcCCCeeEEEecccCCCCccccc
Q 002982 134 SGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
..++.|.| ++..++||||||.+..
T Consensus 258 ~~il~g~~--~ll~a~TGsGKTl~~~ 281 (936)
T 4a2w_A 258 QPAINGKN--ALICAPTGSGKTFVSI 281 (936)
T ss_dssp HHHHTTCC--EEEECCTTSCHHHHHH
T ss_pred HHHHcCCC--EEEEeCCCchHHHHHH
Confidence 34467876 4667899999998864
No 288
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=27.54 E-value=29 Score=39.97 Aligned_cols=17 Identities=41% Similarity=0.583 Sum_probs=14.7
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
+|.-.|++|||||.++.
T Consensus 295 VI~LVGpNGSGKTTLl~ 311 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIG 311 (503)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCcccHHHHHH
Confidence 56678999999999985
No 289
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=27.48 E-value=16 Score=34.66 Aligned_cols=17 Identities=24% Similarity=0.229 Sum_probs=13.9
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
...-+|++|||||..+.
T Consensus 28 ~~~i~G~NGsGKStll~ 44 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGD 44 (182)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred cEEEECCCCCCHHHHHH
Confidence 55678999999998763
No 290
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=27.33 E-value=1.3e+02 Score=26.79 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=13.2
Q ss_pred HHHHhhhhhHHHHHHHhhhc
Q 002982 827 AYLENELANMWVLVAKLKKS 846 (861)
Q Consensus 827 ~~lenelanmwvlvaklkk~ 846 (861)
..||+++.+.=--+.+||+.
T Consensus 61 ~~le~~i~rhk~~i~~l~~~ 80 (84)
T 1gmj_A 61 ERLQKEIERHKQSIKKLKQS 80 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 45566666666677777764
No 291
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=27.33 E-value=29 Score=32.14 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=22.0
Q ss_pred HHHHHHhhc-CCCeeEEEecccCCCCccccc
Q 002982 130 QHVVSGAMD-GINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 130 ~plV~~vl~-GyN~tIfAYGqTGSGKTyTM~ 159 (861)
..++..++. .....|...|.+|+|||..+.
T Consensus 6 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~ 36 (183)
T 1moz_A 6 SSMFDKLWGSNKELRILILGLDGAGKTTILY 36 (183)
T ss_dssp HHHHGGGTTCSSCEEEEEEEETTSSHHHHHH
T ss_pred HHHHHHhcCCCCccEEEEECCCCCCHHHHHH
Confidence 334555555 556778889999999998774
No 292
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=27.12 E-value=23 Score=39.13 Aligned_cols=16 Identities=19% Similarity=0.079 Sum_probs=13.9
Q ss_pred eEEEecccCCCCcccc
Q 002982 143 TIFAYGVTSSGKTHTM 158 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM 158 (861)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4678999999999885
No 293
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=26.93 E-value=1.4e+02 Score=34.13 Aligned_cols=64 Identities=20% Similarity=0.169 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhHHHHhHHHHhcCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccC
Q 002982 518 DQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHN 591 (861)
Q Consensus 518 d~~dllreq~k~l~geva~~~s~lkrl~e~a~~~p~~~~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~ 591 (861)
-++|-|+.+.+-++-+|+- +|+ ++ .+-+.+..+++.|+++|++...++..+|.+|.+.+..=++
T Consensus 47 ~~~~~l~~~rn~~sk~i~~----~k~----~~--~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN 110 (485)
T 3qne_A 47 FDLDEHNKKLNSVQKEIGK----RFK----AK--EDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGN 110 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHH----TT--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHH----Hhc----Cc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3567778888888888762 333 12 2335678899999999999999999999999877766443
No 294
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=26.64 E-value=23 Score=39.54 Aligned_cols=16 Identities=25% Similarity=0.142 Sum_probs=13.4
Q ss_pred eEEEecccCCCCcccc
Q 002982 143 TIFAYGVTSSGKTHTM 158 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM 158 (861)
.++..|+||||||...
T Consensus 23 ~vlv~a~TGsGKT~~~ 38 (459)
T 2z83_A 23 MTVLDLHPGSGKTRKI 38 (459)
T ss_dssp EEEECCCTTSCTTTTH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4667899999999884
No 295
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=26.56 E-value=14 Score=42.03 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=18.1
Q ss_pred HHHhhcCCCeeEEEecccCCCCccccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
|..++.|.+ ++..++||+|||.+..
T Consensus 34 i~~il~g~d--~lv~apTGsGKTl~~~ 58 (523)
T 1oyw_A 34 IDTVLSGRD--CLVVMPTGGGKSLCYQ 58 (523)
T ss_dssp HHHHHTTCC--EEEECSCHHHHHHHHH
T ss_pred HHHHHcCCC--EEEECCCCcHHHHHHH
Confidence 445567876 4556899999998654
No 296
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=26.47 E-value=16 Score=39.68 Aligned_cols=21 Identities=33% Similarity=0.137 Sum_probs=15.6
Q ss_pred hcCCCeeEEEecccCCCCccccc
Q 002982 137 MDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 137 l~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
-.|.+. .-.|+||||||+++.
T Consensus 173 ~~G~~i--~ivG~sGsGKSTll~ 193 (361)
T 2gza_A 173 QLERVI--VVAGETGSGKTTLMK 193 (361)
T ss_dssp HTTCCE--EEEESSSSCHHHHHH
T ss_pred hcCCEE--EEECCCCCCHHHHHH
Confidence 356544 445999999999884
No 297
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=26.41 E-value=32 Score=41.59 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHh-hcCCCeeEEEecccCCCCcccc
Q 002982 123 HVYDIAAQHVVSGA-MDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 123 eVY~~~~~plV~~v-l~GyN~tIfAYGqTGSGKTyTM 158 (861)
.||.. +......+ -.+.|.||+.-|.+|+|||.+.
T Consensus 154 Hifai-A~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 154 HIFAI-SDVAYRSMLDDRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp CHHHH-HHHHHHHHHHHCCCEEEEEECSTTSSHHHHH
T ss_pred cHHHH-HHHHHHHHHhhcCCcEEEEecCCCCcchHHH
Confidence 45552 22233333 3699999999999999999875
No 298
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=26.39 E-value=51 Score=28.74 Aligned_cols=39 Identities=33% Similarity=0.325 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhh
Q 002982 685 AAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLA 723 (861)
Q Consensus 685 ~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~la 723 (861)
-....++.+++.+|..+|..|..+.+.|..|..+-|+|=
T Consensus 35 k~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677889999999999999999998888888877763
No 299
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=26.22 E-value=19 Score=33.88 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=14.8
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..|+-.|..|||||+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357889999999998753
No 300
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=26.20 E-value=16 Score=39.24 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=16.2
Q ss_pred hhcCCCeeEEEecccCCCCccccc
Q 002982 136 AMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 136 vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
+-.|.+ +.-.|+||||||.++.
T Consensus 168 i~~g~~--v~i~G~~GsGKTTll~ 189 (330)
T 2pt7_A 168 IAIGKN--VIVCGGTGSGKTTYIK 189 (330)
T ss_dssp HHHTCC--EEEEESTTSCHHHHHH
T ss_pred ccCCCE--EEEECCCCCCHHHHHH
Confidence 335654 4557999999999874
No 301
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=26.04 E-value=18 Score=42.47 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=16.0
Q ss_pred hhcCCCeeEEEecccCCCCcccc
Q 002982 136 AMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 136 vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
+..|. .++..|+||||||...
T Consensus 36 ~~~~~--~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 36 ILEGK--NALISIPTASGKTLIA 56 (720)
T ss_dssp GGGTC--EEEEECCGGGCHHHHH
T ss_pred hcCCC--cEEEEcCCccHHHHHH
Confidence 34554 4778899999999765
No 302
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=25.84 E-value=33 Score=41.55 Aligned_cols=35 Identities=26% Similarity=0.436 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHh-hcCCCeeEEEecccCCCCcccc
Q 002982 123 HVYDIAAQHVVSGA-MDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 123 eVY~~~~~plV~~v-l~GyN~tIfAYGqTGSGKTyTM 158 (861)
.||..+ ......+ -.+.|.||+.-|.+|||||.+.
T Consensus 122 HifaiA-~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 122 HVFAIA-DKAFRDMKVLKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp CHHHHH-HHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHH-HHHHHHHHhcCCCcEEEEcCCCCCCceehH
Confidence 466532 2233333 3699999999999999999875
No 303
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=25.82 E-value=17 Score=35.57 Aligned_cols=17 Identities=18% Similarity=0.387 Sum_probs=13.6
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
++.-.|++|||||.++.
T Consensus 22 i~~l~GpnGsGKSTLl~ 38 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVR 38 (207)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 34456999999999874
No 304
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=25.76 E-value=6.6e+02 Score=28.85 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhhhHHHHHhhhhhHHHHHHHhhhcC
Q 002982 813 AELQRKVEESKKREAYLENELANMWVLVAKLKKSH 847 (861)
Q Consensus 813 ~el~~~~ee~k~~e~~lenelanmwvlvaklkk~~ 847 (861)
+.|++.+-|=..+-+.-|.||+-+=-.+|++.|..
T Consensus 76 akY~~~~AeY~~kl~aYe~~~~~~~k~lae~ek~k 110 (497)
T 3iox_A 76 AKYQKDLADYPVKLKAYEDEQTSIKAALAELEKHK 110 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33333333333334445566666666667775543
No 305
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=25.74 E-value=2.6e+02 Score=27.35 Aligned_cols=59 Identities=15% Similarity=0.129 Sum_probs=29.3
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhcccCccCcccccccccchhhhHHHHHHhHHhhhhhHHHHHHHHHHH
Q 002982 565 RDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQVKAADNRIIQEQLNQKICECEGLQETIGFLKQQ 633 (861)
Q Consensus 565 ~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~ik~adnrilqeql~~k~~e~~elqe~v~~l~qq 633 (861)
.+.|...+...+.|+++|.+--+.- ..|..++-+||+-+..=.-+...+++++..|++.
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel----------~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~E 125 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVI----------ALKNKNTERLNAALISGTIENNVLQQKLSDLKKE 125 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554221110 1344555566665555555555555555555554
No 306
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=25.67 E-value=51 Score=26.66 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhhHHhHhhhhhhhh
Q 002982 685 AAEIEELNRKVTELTEAKEQLELR 708 (861)
Q Consensus 685 ~~e~e~lk~~~~~l~e~k~~l~~~ 708 (861)
..|+++||+++.+|.++.+.|..+
T Consensus 25 k~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 25 RLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666554
No 307
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=25.62 E-value=23 Score=34.44 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=15.2
Q ss_pred CeeEEEecccCCCCccccc
Q 002982 141 NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (861)
...|+-.|++|||||+.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4567778999999998763
No 308
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=25.57 E-value=33 Score=42.76 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHh-hcCCCeeEEEecccCCCCcccc
Q 002982 123 HVYDIAAQHVVSGA-MDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 123 eVY~~~~~plV~~v-l~GyN~tIfAYGqTGSGKTyTM 158 (861)
.||.. +......+ -.+.|.||+.-|.+|||||.+.
T Consensus 154 Hifai-A~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 189 (1010)
T 1g8x_A 154 HIFAI-SDVAYRSMLDDRQNQSLLITGESGAGKTENT 189 (1010)
T ss_dssp CHHHH-HHHHHHHHHHHTCCEEEEEEESTTSSHHHHH
T ss_pred cHHHH-HHHHHHHHHhcCCCeEEEEeCCCCCCcchHH
Confidence 56653 22333333 3699999999999999999885
No 309
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=25.44 E-value=19 Score=34.90 Aligned_cols=17 Identities=35% Similarity=0.430 Sum_probs=14.5
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.|+-.|.+|||||+...
T Consensus 27 ~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 57889999999998764
No 310
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=25.38 E-value=17 Score=35.63 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=14.8
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.++-||+.|+|||+.+.
T Consensus 5 i~vi~G~~gsGKTT~ll 21 (184)
T 2orw_A 5 LTVITGPMYSGKTTELL 21 (184)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999999985
No 311
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=25.35 E-value=28 Score=35.90 Aligned_cols=18 Identities=17% Similarity=0.416 Sum_probs=16.3
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..|+-||+.|+|||..+.
T Consensus 31 ~~v~i~G~~G~GKT~L~~ 48 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIK 48 (357)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 588999999999999885
No 312
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=25.21 E-value=44 Score=37.58 Aligned_cols=18 Identities=44% Similarity=0.418 Sum_probs=15.1
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..|+..|.+|+|||+|+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~ 115 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAG 115 (433)
T ss_dssp EEEEECCCTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 466777999999999975
No 313
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=25.17 E-value=35 Score=42.43 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHh-hcCCCeeEEEecccCCCCcccc
Q 002982 123 HVYDIAAQHVVSGA-MDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 123 eVY~~~~~plV~~v-l~GyN~tIfAYGqTGSGKTyTM 158 (861)
.||.. +......+ -.+.|.||+.-|.+|||||.+.
T Consensus 128 Hifai-A~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 163 (995)
T 2ycu_A 128 HVYAV-TEGAYRSMLQDREDQSILCTGESGAGKTENT 163 (995)
T ss_dssp CHHHH-HHHHHHHHHHHCCCEEEEEECBTTSSHHHHH
T ss_pred hHHHH-hHHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 46653 22333333 3699999999999999999885
No 314
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=25.06 E-value=19 Score=33.66 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=14.4
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.|+-.|..|||||+...
T Consensus 6 ~i~l~G~~GsGKSTl~~ 22 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGR 22 (173)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 57789999999998764
No 315
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=25.03 E-value=1e+02 Score=23.08 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Q 002982 560 EIKKLRDEIKGKNDQIALLEKQIA 583 (861)
Q Consensus 560 ~~~~l~~ei~~k~~qi~~le~~i~ 583 (861)
++.....+|.+.|+|.+.||.+|-
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHHHHHHHHHHHHH
Confidence 445667789999999999999874
No 316
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=24.93 E-value=1.6e+02 Score=33.26 Aligned_cols=65 Identities=17% Similarity=0.304 Sum_probs=48.5
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhHHHHhHHHHhcCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccC
Q 002982 517 IDQIDLLREQQKILAGEVALHSSALKRLSEEAARNPQKEQLQVEIKKLRDEIKGKNDQIALLEKQIADSIMTSHN 591 (861)
Q Consensus 517 ~d~~dllreq~k~l~geva~~~s~lkrl~e~a~~~p~~~~~~~~~~~l~~ei~~k~~qi~~le~~i~~s~~~s~~ 591 (861)
.-++|-|+.+.+-++.+|+- +|+ ...+-+++..+++.|+++|++...++..+|.++.+.+..=++
T Consensus 44 ~~~~~~l~~~~n~~sk~i~~----~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN 108 (455)
T 2dq0_A 44 LKEINRLRHERNKIAVEIGK----RRK------KGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPN 108 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHT------SCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHH----hhc------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44567777777777777762 221 123446788999999999999999999999999877766554
No 317
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=24.88 E-value=29 Score=37.26 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=22.7
Q ss_pred HHHHHHhhc-CC--CeeEEEecccCCCCccccc
Q 002982 130 QHVVSGAMD-GI--NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 130 ~plV~~vl~-Gy--N~tIfAYGqTGSGKTyTM~ 159 (861)
-+-++.++. |+ ...+.-||++|||||..+.
T Consensus 108 ~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~ 140 (343)
T 1v5w_A 108 SQEFDKLLGGGIESMAITEAFGEFRTGKTQLSH 140 (343)
T ss_dssp CHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHH
T ss_pred ChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 355788885 44 3467889999999998875
No 318
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=24.68 E-value=60 Score=28.90 Aligned_cols=39 Identities=33% Similarity=0.325 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhh
Q 002982 685 AAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLA 723 (861)
Q Consensus 685 ~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~la 723 (861)
-....++.+++.+|..+|..|..+.+.|..|-.+-++|=
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888999999999999999888888888777663
No 319
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=24.66 E-value=39 Score=42.56 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=19.6
Q ss_pred HHHHhhcCCCeeEEEecccCCCCcccc
Q 002982 132 VVSGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 132 lV~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
++.++-.|...-++.+|+||+|||.+.
T Consensus 615 il~~~~~g~p~d~ll~~~TGsGKT~va 641 (1151)
T 2eyq_A 615 VLSDMCQPLAMDRLVCGDVGFGKTEVA 641 (1151)
T ss_dssp HHHHHHSSSCCEEEEECCCCTTTHHHH
T ss_pred HHHHHhcCCcCcEEEECCCCCCHHHHH
Confidence 333444477667889999999999764
No 320
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=24.59 E-value=24 Score=39.20 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=16.0
Q ss_pred hhcCCCeeEEEecccCCCCcccc
Q 002982 136 AMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 136 vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
++.|.| ++..|+||||||...
T Consensus 5 l~~g~~--vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 5 LKKGMT--TVLDFHPGAGKTRRF 25 (440)
T ss_dssp TSTTCE--EEECCCTTSSTTTTH
T ss_pred hhCCCC--EEEEcCCCCCHHHHH
Confidence 345554 567899999999984
No 321
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=24.56 E-value=44 Score=37.79 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=16.3
Q ss_pred CeeEEEecccCCCCccccc
Q 002982 141 NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (861)
...|+..|.+|+|||+|..
T Consensus 100 p~vIlivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVA 118 (443)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHH
Confidence 4578889999999999985
No 322
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=24.54 E-value=18 Score=35.71 Aligned_cols=17 Identities=35% Similarity=0.593 Sum_probs=14.2
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.|.-.|++|+|||.++.
T Consensus 3 ~i~i~G~nG~GKTTll~ 19 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIH 19 (189)
T ss_dssp CEEEESCCSSCHHHHHH
T ss_pred EEEEECCCCChHHHHHH
Confidence 45678999999999874
No 323
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=24.38 E-value=21 Score=32.99 Aligned_cols=17 Identities=18% Similarity=0.051 Sum_probs=14.1
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.|+-.|..|||||+...
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46778999999998764
No 324
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=24.31 E-value=1.3e+02 Score=26.33 Aligned_cols=44 Identities=25% Similarity=0.397 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhh
Q 002982 788 KRELALSREREVSYEAALLEKDQQEAELQRKVEESKKREAYLENELA 834 (861)
Q Consensus 788 ~~el~~~~~re~~le~~l~ek~~~e~el~~~~ee~k~~e~~lenela 834 (861)
+.||...+++ |+.++.+-++-++++.+-|+--|.+++.|+.-|+
T Consensus 34 ~~EL~~G~~K---L~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l~ 77 (78)
T 3iv1_A 34 EEDLKKGHQK---LEEMVTRLDQEVAEVDKNIELLKKKDEELSSALE 77 (78)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6778777765 9999999999999999999999999999998764
No 325
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=24.29 E-value=21 Score=36.63 Aligned_cols=16 Identities=44% Similarity=0.553 Sum_probs=13.4
Q ss_pred eEEEecccCCCCcccc
Q 002982 143 TIFAYGVTSSGKTHTM 158 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM 158 (861)
.|+-.|++|||||..-
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4678999999999864
No 326
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=24.17 E-value=35 Score=41.71 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=19.6
Q ss_pred cCCCeeEEEecccCCCCcccc
Q 002982 138 DGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 138 ~GyN~tIfAYGqTGSGKTyTM 158 (861)
++.|.||+.-|.+|||||.+.
T Consensus 166 ~~~nQsIiiSGESGAGKTe~t 186 (837)
T 1kk8_A 166 DRENQSCLITGESGAGKTENT 186 (837)
T ss_dssp HTSEEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEeCCCCCCchhhH
Confidence 699999999999999999885
No 327
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=24.15 E-value=37 Score=41.18 Aligned_cols=35 Identities=26% Similarity=0.430 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHh-hcCCCeeEEEecccCCCCcccc
Q 002982 123 HVYDIAAQHVVSGA-MDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 123 eVY~~~~~plV~~v-l~GyN~tIfAYGqTGSGKTyTM 158 (861)
.||..+ ......+ -.+.|.||+.-|.+|+|||.+.
T Consensus 138 HifaiA-~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 173 (795)
T 1w7j_A 138 HIFAVA-EEAYKQMARDERNQSIIVSGESGAGKTVSA 173 (795)
T ss_dssp CHHHHH-HHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred cHhHHH-HHHHHHhHhcCCCeEEEEeCCCCCCcchHH
Confidence 466532 2233333 3699999999999999999875
No 328
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=24.10 E-value=18 Score=36.03 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=13.0
Q ss_pred EEEecccCCCCccccc
Q 002982 144 IFAYGVTSSGKTHTMH 159 (861)
Q Consensus 144 IfAYGqTGSGKTyTM~ 159 (861)
+.-.|++|||||..+.
T Consensus 26 ~~lvGpsGsGKSTLl~ 41 (218)
T 1z6g_A 26 LVICGPSGVGKGTLIK 41 (218)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 4457999999999874
No 329
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=23.90 E-value=63 Score=32.96 Aligned_cols=48 Identities=19% Similarity=0.322 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhHHHHHHHHhhHHHHHHHhhh
Q 002982 685 AAEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNH 743 (861)
Q Consensus 685 ~~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~lasaaavelk~l~eevtkl~~q 743 (861)
-.|+++|..++..|-|+.+.|.-.|+.|.+=+-. ++.||+=+++|+.+
T Consensus 114 LeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~-----------~q~la~vi~~l~~~ 161 (209)
T 2wvr_A 114 LKENEKLHKEIEQKDNEIARLKKENKELAEVAEH-----------VQYMAELIERLNGE 161 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhcC
Confidence 3489999999999999999998888776543333 34444555566543
No 330
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=23.88 E-value=22 Score=33.52 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=13.6
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
..+-||++|||||..|.
T Consensus 25 ~~~I~G~NGsGKStil~ 41 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLD 41 (149)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 34568999999998764
No 331
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=23.62 E-value=21 Score=33.59 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=14.8
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..|+-.|..|||||+.+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp EEEEEECSTTSCHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHH
Confidence 357778999999998764
No 332
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=23.54 E-value=39 Score=40.96 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHh-hcCCCeeEEEecccCCCCcccc
Q 002982 123 HVYDIAAQHVVSGA-MDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 123 eVY~~~~~plV~~v-l~GyN~tIfAYGqTGSGKTyTM 158 (861)
.||.. +......+ -.+.|-||+.-|.+|+|||.+.
T Consensus 153 Hifai-A~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 153 HIFSI-SDNAYQYMLTDRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp CHHHH-HHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred hhhHH-HHHHHHHHHhhCCCceEEEeCCCCCCCchHH
Confidence 45552 33333333 3799999999999999999875
No 333
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=23.38 E-value=44 Score=36.86 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=18.5
Q ss_pred cCCCeeEEEecccCCCCccccc
Q 002982 138 DGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 138 ~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.|.-..|+-+|..|+|||+...
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~ 42 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAE 42 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHH
Confidence 5766778899999999998764
No 334
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=23.33 E-value=21 Score=36.73 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=17.5
Q ss_pred hcCCCeeEEEecccCCCCcccc
Q 002982 137 MDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 137 l~GyN~tIfAYGqTGSGKTyTM 158 (861)
-.|+...|...|.+|+|||..+
T Consensus 4 ~~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 4 GSGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp ---CEEEEEEEECTTSSHHHHH
T ss_pred cCccEEEEEEECCCCCCHHHHH
Confidence 3688899999999999999766
No 335
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=23.27 E-value=3.7e+02 Score=30.60 Aligned_cols=19 Identities=16% Similarity=0.263 Sum_probs=10.7
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 002982 620 CEGLQETIGFLKQQLNDAL 638 (861)
Q Consensus 620 ~~elqe~v~~l~qql~~~~ 638 (861)
.+.|.++|..|+..+....
T Consensus 177 ~~~l~~ki~~l~~~~~~~~ 195 (464)
T 1m1j_B 177 IDSLHKKIQKLENAIATQT 195 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666666666655443
No 336
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=23.27 E-value=21 Score=33.85 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=14.9
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..|+-.|..|||||+...
T Consensus 6 ~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 467889999999998753
No 337
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=23.00 E-value=23 Score=33.39 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=14.1
Q ss_pred eeEEEecccCCCCcccc
Q 002982 142 GTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM 158 (861)
..|+-.|..|||||+..
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999999875
No 338
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=23.00 E-value=27 Score=33.31 Aligned_cols=21 Identities=24% Similarity=0.053 Sum_probs=16.2
Q ss_pred cCCCeeEEEecccCCCCcccc
Q 002982 138 DGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 138 ~GyN~tIfAYGqTGSGKTyTM 158 (861)
.+..-.|.-.|.+|||||+..
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVA 25 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHH
Confidence 344567888999999999865
No 339
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=22.92 E-value=33 Score=42.74 Aligned_cols=21 Identities=24% Similarity=0.158 Sum_probs=15.9
Q ss_pred HHhhcCCCeeEEEecccCCCCcc
Q 002982 134 SGAMDGINGTIFAYGVTSSGKTH 156 (861)
Q Consensus 134 ~~vl~GyN~tIfAYGqTGSGKTy 156 (861)
..++.|.| +++.|+||||||.
T Consensus 66 ~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 66 KRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHhCCC--EEEEcCCCCCHHH
Confidence 34567755 6778999999995
No 340
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=22.74 E-value=32 Score=36.11 Aligned_cols=31 Identities=29% Similarity=0.431 Sum_probs=22.9
Q ss_pred HHHHHHHhhc-CC--CeeEEEecccCCCCccccc
Q 002982 129 AQHVVSGAMD-GI--NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 129 ~~plV~~vl~-Gy--N~tIfAYGqTGSGKTyTM~ 159 (861)
+-+-++.++. |+ ...+.-||++|+|||..+.
T Consensus 83 G~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~ 116 (322)
T 2i1q_A 83 SSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMH 116 (322)
T ss_dssp SCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHH
T ss_pred CChhHHHhcCCCccCCeEEEEECCCCCCHHHHHH
Confidence 3466777775 43 3567889999999998764
No 341
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=22.71 E-value=40 Score=39.68 Aligned_cols=46 Identities=22% Similarity=0.358 Sum_probs=33.7
Q ss_pred EeeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 109 YAYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 109 F~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
|..-.-|.|...|..-+.. ++..+-.|... ....|.|||||||+|-
T Consensus 5 ~~~~~~~~p~~~Q~~~i~~----l~~~~~~~~~~-~~l~g~~gs~k~~~~a 50 (661)
T 2d7d_A 5 FELVSKYQPQGDQPKAIEK----LVKGIQEGKKH-QTLLGATGTGKTFTVS 50 (661)
T ss_dssp CCCCCSCCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHH
T ss_pred ceeecCCCCCCCCHHHHHH----HHHHHhcCCCc-EEEECcCCcHHHHHHH
Confidence 6666778899999888765 45555556432 3456999999999994
No 342
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=22.64 E-value=24 Score=33.35 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=14.2
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.|+-.|..|||||+...
T Consensus 6 ~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57888999999998753
No 343
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=22.51 E-value=62 Score=36.21 Aligned_cols=18 Identities=39% Similarity=0.545 Sum_probs=15.4
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..|..+|++|+|||++..
T Consensus 100 ~vI~ivG~~GvGKTTla~ 117 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAA 117 (432)
T ss_dssp CCEEEECCSSSSTTHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 367788999999999985
No 344
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=22.51 E-value=28 Score=40.82 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=14.3
Q ss_pred eeEEEecccCCCCcccc
Q 002982 142 GTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM 158 (861)
..++..|+||||||...
T Consensus 47 ~~~lv~apTGsGKT~~~ 63 (715)
T 2va8_A 47 NRLLLTSPTGSGKTLIA 63 (715)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CcEEEEcCCCCcHHHHH
Confidence 45677899999999886
No 345
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=22.50 E-value=31 Score=36.57 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=22.2
Q ss_pred HHHHHHhhc-CC--CeeEEEecccCCCCccccc
Q 002982 130 QHVVSGAMD-GI--NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 130 ~plV~~vl~-Gy--N~tIfAYGqTGSGKTyTM~ 159 (861)
-+-++.++. |+ ...+.-||++|+|||..+.
T Consensus 93 ~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~ 125 (324)
T 2z43_A 93 SQALDGLLAGGIETRTMTEFFGEFGSGKTQLCH 125 (324)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHH
T ss_pred chhHHHhcCCCCCCCcEEEEECCCCCCHhHHHH
Confidence 356777775 33 3467889999999998764
No 346
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=22.37 E-value=22 Score=42.27 Aligned_cols=20 Identities=45% Similarity=0.506 Sum_probs=15.3
Q ss_pred hcCCCeeEEEecccCCCCcccc
Q 002982 137 MDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 137 l~GyN~tIfAYGqTGSGKTyTM 158 (861)
++| -.|+..|+||||||+.+
T Consensus 153 l~r--k~vlv~apTGSGKT~~a 172 (677)
T 3rc3_A 153 MQR--KIIFHSGPTNSGKTYHA 172 (677)
T ss_dssp SCC--EEEEEECCTTSSHHHHH
T ss_pred cCC--CEEEEEcCCCCCHHHHH
Confidence 444 35788999999999843
No 347
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=22.32 E-value=21 Score=35.69 Aligned_cols=17 Identities=35% Similarity=0.388 Sum_probs=14.0
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.++-+|..|||||+.+.
T Consensus 7 i~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMV 23 (199)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 35678999999999864
No 348
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=22.18 E-value=1.1e+02 Score=21.89 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q 002982 559 VEIKKLRDEIKGKNDQIALLEK 580 (861)
Q Consensus 559 ~~~~~l~~ei~~k~~qi~~le~ 580 (861)
.+|..|+.||-..|-.|+.|-|
T Consensus 9 qeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 9 QEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3566666666666666666654
No 349
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=22.17 E-value=19 Score=42.27 Aligned_cols=31 Identities=19% Similarity=0.186 Sum_probs=21.8
Q ss_pred CCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCcccc
Q 002982 118 TTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 118 ~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM 158 (861)
..-|.+++.. +++|.| ++..|+||||||...
T Consensus 27 ~~~Q~~~i~~--------i~~~~~--~lv~apTGsGKT~~~ 57 (702)
T 2p6r_A 27 FPPQAEAVEK--------VFSGKN--LLLAMPTAAGKTLLA 57 (702)
T ss_dssp CCCCHHHHHH--------HTTCSC--EEEECSSHHHHHHHH
T ss_pred CHHHHHHHHH--------HhCCCc--EEEEcCCccHHHHHH
Confidence 3457776664 345554 577899999999875
No 350
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=21.94 E-value=22 Score=34.66 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=13.8
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.|+-.|++|||||..+.
T Consensus 14 ~i~l~G~sGsGKsTl~~ 30 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIK 30 (204)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46678999999998764
No 351
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=21.89 E-value=24 Score=36.01 Aligned_cols=19 Identities=26% Similarity=0.200 Sum_probs=16.0
Q ss_pred eeEEEecccCCCCcccccc
Q 002982 142 GTIFAYGVTSSGKTHTMHT 160 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~g 160 (861)
..++-||.+|+|||..+.+
T Consensus 13 ~i~litG~mGsGKTT~ll~ 31 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIR 31 (223)
T ss_dssp EEEEEECSTTSCHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 5678899999999998863
No 352
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=21.66 E-value=29 Score=32.56 Aligned_cols=18 Identities=44% Similarity=0.580 Sum_probs=10.8
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..|+-.|..|||||+...
T Consensus 6 ~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CEEEEECCC----CHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357889999999998753
No 353
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=21.64 E-value=44 Score=41.83 Aligned_cols=35 Identities=23% Similarity=0.391 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHh-hcCCCeeEEEecccCCCCcccc
Q 002982 123 HVYDIAAQHVVSGA-MDGINGTIFAYGVTSSGKTHTM 158 (861)
Q Consensus 123 eVY~~~~~plV~~v-l~GyN~tIfAYGqTGSGKTyTM 158 (861)
.||. ++......+ -.+.|-||+.-|.+|||||.+.
T Consensus 126 HIfa-iA~~AY~~M~~~~~nQsIiiSGESGAGKTest 161 (1052)
T 4anj_A 126 HVFA-IADKAFRDMKVLKLSQSIIVSGESGAGKTENT 161 (1052)
T ss_dssp CHHH-HHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred cHHH-HHHHHHHHHHHhCCCceEEEecCCCCCHHHHH
Confidence 5665 333333333 3799999999999999999875
No 354
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=21.59 E-value=92 Score=27.34 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhHHhHhhhhhhhhhchhhhhhhhhhhhhH
Q 002982 686 AEIEELNRKVTELTEAKEQLELRNQKLSEESSYAKGLAS 724 (861)
Q Consensus 686 ~e~e~lk~~~~~l~e~k~~l~~~n~kl~ee~~yak~las 724 (861)
.|+++|-.++..+-|+-..|.-.|..|.|=+..++-||.
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~lae 72 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAE 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888888888888888877665555554443
No 355
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=21.58 E-value=3.2e+02 Score=23.92 Aligned_cols=32 Identities=13% Similarity=0.189 Sum_probs=26.2
Q ss_pred hhHHHHHHhHHhhhhhHHHHHHHHHHHHHHHH
Q 002982 607 RIIQEQLNQKICECEGLQETIGFLKQQLNDAL 638 (861)
Q Consensus 607 rilqeql~~k~~e~~elqe~v~~l~qql~~~~ 638 (861)
--+..+||.--.+|.+|.++|..|+++|.+..
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~ 40 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERSLEEAR 40 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 34567788888899999999999999998853
No 356
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=21.56 E-value=37 Score=40.81 Aligned_cols=16 Identities=38% Similarity=0.478 Sum_probs=13.2
Q ss_pred eEEEecccCCCCcccc
Q 002982 143 TIFAYGVTSSGKTHTM 158 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM 158 (861)
.++..|+||||||..+
T Consensus 111 ~vii~gpTGSGKTtll 126 (773)
T 2xau_A 111 IMVFVGETGSGKTTQI 126 (773)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4677899999999944
No 357
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=21.54 E-value=3.8e+02 Score=23.74 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=13.0
Q ss_pred HHHHhHHhhhhhHHHHHHHHHHHHHH
Q 002982 611 EQLNQKICECEGLQETIGFLKQQLND 636 (861)
Q Consensus 611 eql~~k~~e~~elqe~v~~l~qql~~ 636 (861)
+++++-..+..+|+..+..++.++..
T Consensus 10 ~~~~~~~~~l~~L~~~~~~l~~~i~~ 35 (112)
T 1l8d_A 10 TKKTTIEEERNEITQRIGELKNKIGD 35 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555544
No 358
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=21.53 E-value=24 Score=35.52 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=15.1
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..|+-.|+.|||||+.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k 45 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQ 45 (246)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 467788999999998774
No 359
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=21.51 E-value=30 Score=42.99 Aligned_cols=53 Identities=19% Similarity=0.294 Sum_probs=30.0
Q ss_pred HHHhHHHHHHHHHHHHHhhhhcccCccCcccccccccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHHHH
Q 002982 567 EIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLND 636 (861)
Q Consensus 567 ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~ik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~ 636 (861)
+..+..++|..||.+|...--. ...| -+++-....+-..|++++..|++++++
T Consensus 757 ~~~~~~~~~~~l~~~~~~~~~~--------------~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~ 809 (1010)
T 2xgj_A 757 DFLKLMKKIDVLNTKLSSNPLT--------------NSMR---LEELYGKYSRKHDLHEDMKQLKRKISE 809 (1010)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHH--------------HSSS---HHHHHHHHHHC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcc--------------cCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455557777788877532111 0011 133444556667778888888888766
No 360
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=21.40 E-value=25 Score=36.33 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=18.9
Q ss_pred HHHhhcCCC--eeEEEecccCCCCccccc
Q 002982 133 VSGAMDGIN--GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 133 V~~vl~GyN--~tIfAYGqTGSGKTyTM~ 159 (861)
++.+.-|+. ..+.-+|++|+|||..+.
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~ 53 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVR 53 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHH
Confidence 444544443 356678999999999875
No 361
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=21.38 E-value=24 Score=33.83 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=14.4
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.|+-.|..|||||+...
T Consensus 12 ~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 12 NILITGTPGTGKTSMAE 28 (184)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998753
No 362
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=21.27 E-value=36 Score=36.73 Aligned_cols=30 Identities=27% Similarity=0.414 Sum_probs=21.9
Q ss_pred HHHHHHhhcC-C--CeeEEEecccCCCCccccc
Q 002982 130 QHVVSGAMDG-I--NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 130 ~plV~~vl~G-y--N~tIfAYGqTGSGKTyTM~ 159 (861)
-+-++.++.| + ...+.-||++|||||..+.
T Consensus 117 ~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~ 149 (349)
T 1pzn_A 117 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLAH 149 (349)
T ss_dssp CHHHHHHHTSSEESSEEEEEEESTTSSHHHHHH
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 3556777754 2 3467789999999998764
No 363
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=21.26 E-value=41 Score=37.01 Aligned_cols=18 Identities=28% Similarity=0.169 Sum_probs=15.0
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..|.-+|++|+|||..+.
T Consensus 170 ~~i~l~G~~GsGKSTl~~ 187 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAA 187 (377)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 467789999999998764
No 364
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=21.22 E-value=24 Score=40.53 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=15.8
Q ss_pred CeeEEEecccCCCCccccc
Q 002982 141 NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 141 N~tIfAYGqTGSGKTyTM~ 159 (861)
...|+-||++|+|||+.+.
T Consensus 108 g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp SCEEEEESSSSSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3467889999999999875
No 365
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=21.20 E-value=28 Score=37.18 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=15.4
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..|+-.|++|+|||+|+.
T Consensus 105 ~vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEEcCCCChHHHHHH
Confidence 467788999999999985
No 366
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=21.14 E-value=1.4e+02 Score=22.47 Aligned_cols=29 Identities=34% Similarity=0.297 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhhhHHHHHhhhhhHHHHHH
Q 002982 813 AELQRKVEESKKREAYLENELANMWVLVA 841 (861)
Q Consensus 813 ~el~~~~ee~k~~e~~lenelanmwvlva 841 (861)
..|..|+||-..+-..||||.+..--|++
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 56778999999999999999877655554
No 367
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=21.11 E-value=25 Score=32.73 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=14.0
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.|+-.|..|||||+...
T Consensus 4 ~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CEEEESCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47788999999998753
No 368
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=21.04 E-value=25 Score=33.06 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=14.2
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.|+-.|..|||||+...
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47789999999998764
No 369
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=20.99 E-value=29 Score=43.47 Aligned_cols=55 Identities=16% Similarity=0.299 Sum_probs=33.7
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhcccCccCcccccccccchhhhHHHHHHhHHhhhhhHHHHHHHHHHHHHH
Q 002982 565 RDEIKGKNDQIALLEKQIADSIMTSHNTMDNSEVSQVKAADNRIIQEQLNQKICECEGLQETIGFLKQQLND 636 (861)
Q Consensus 565 ~~ei~~k~~qi~~le~~i~~s~~~s~~~~~~~~~~~ik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~ 636 (861)
.++.++.-++|..||.+|... +.- ...| -+++-....+-..|++++..|++++++
T Consensus 853 ~~~~~~~~~~~~~l~~~~~~~------~~~--------~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~ 907 (1108)
T 3l9o_A 853 DEDFLKLMKKIDVLNTKLSSN------PLT--------NSMR---LEELYGKYSRKHDLHEDMKQLKRKISE 907 (1108)
T ss_dssp CHHHHHHHHHHHHHHHHHHHS------SCT--------TCSS---HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHhC------CCc--------CCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356666677888899888631 110 1111 244445566667778888888888765
No 370
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=20.97 E-value=47 Score=24.54 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=23.9
Q ss_pred HhhHHHHHHHhhhhhhHHHHHHhhcCCC
Q 002982 731 KALSEEVAKLMNHKERLTAELAAAKSSP 758 (861)
Q Consensus 731 k~l~eevtkl~~qn~~l~~el~~~~~~~ 758 (861)
+.|-+.|..|+..|.-|..|++..|+.-
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4678899999999999999999887643
No 371
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=20.58 E-value=46 Score=35.30 Aligned_cols=35 Identities=11% Similarity=0.210 Sum_probs=22.3
Q ss_pred chhHHHHHHHHHHHHhhcCC-CeeEEEecccCCCCccccc
Q 002982 121 TRHVYDIAAQHVVSGAMDGI-NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 121 QeeVY~~~~~plV~~vl~Gy-N~tIfAYGqTGSGKTyTM~ 159 (861)
|+++|+. +...+-.|- .-.++-||+.|+|||.+..
T Consensus 7 ~~~~~~~----l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 7 LRPDFEK----LVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp GHHHHHH----HHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred hHHHHHH----HHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 4445543 333333443 4468889999999998864
No 372
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=20.50 E-value=25 Score=34.07 Aligned_cols=17 Identities=41% Similarity=0.317 Sum_probs=13.7
Q ss_pred eEEEecccCCCCccccc
Q 002982 143 TIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM~ 159 (861)
.|.-.|++|||||+.+.
T Consensus 8 ~i~i~G~~GsGKSTl~~ 24 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQ 24 (211)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45567999999998874
No 373
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=20.39 E-value=28 Score=41.30 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=17.0
Q ss_pred CCeeEEEecccCCCCccccc
Q 002982 140 INGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 140 yN~tIfAYGqTGSGKTyTM~ 159 (861)
.++.++..|..|||||+||.
T Consensus 23 ~~g~~lV~AgAGSGKT~vL~ 42 (724)
T 1pjr_A 23 TEGPLLIMAGAGSGKTRVLT 42 (724)
T ss_dssp CSSCEEEEECTTSCHHHHHH
T ss_pred CCCCEEEEEcCCCCHHHHHH
Confidence 35678888999999999985
No 374
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=20.38 E-value=27 Score=37.90 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.0
Q ss_pred hhcCCCeeEEEecccCCCCccccc
Q 002982 136 AMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 136 vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
+..|++..|...|.+|+|||..+.
T Consensus 32 ~~~~~~~~I~vvG~~g~GKSTLln 55 (361)
T 2qag_A 32 VKKGFEFTLMVVGESGLGKSTLIN 55 (361)
T ss_dssp HHHCCEECEEECCCTTSCHHHHHH
T ss_pred ecCCCCEEEEEEcCCCCCHHHHHH
Confidence 577999999999999999997663
No 375
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=20.34 E-value=26 Score=33.97 Aligned_cols=18 Identities=39% Similarity=0.604 Sum_probs=14.3
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
..|+-.|+.|||||..+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 356668999999998764
No 376
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=20.31 E-value=40 Score=39.02 Aligned_cols=40 Identities=20% Similarity=0.323 Sum_probs=25.4
Q ss_pred eeceecCCCCcchhHHHHHHHHHHHHhhcCCCeeEEEecccCCCCccccc
Q 002982 110 AYDRVFGPTTTTRHVYDIAAQHVVSGAMDGINGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 110 ~FD~VF~~~atQeeVY~~~~~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 159 (861)
.|+.+++. ..+. ..+-..+-.| ..++-+|++|+|||+.+.
T Consensus 39 ~l~~i~G~----~~~l----~~l~~~i~~g--~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 39 LIDQVIGQ----EHAV----EVIKTAANQK--RHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp HHHHCCSC----HHHH----HHHHHHHHTT--CCEEEECCTTSSHHHHHH
T ss_pred ccceEECc----hhhH----hhccccccCC--CEEEEEeCCCCCHHHHHH
Confidence 45666653 3333 3333444456 367779999999999874
No 377
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=20.30 E-value=28 Score=33.14 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=13.8
Q ss_pred eEEEecccCCCCcccc
Q 002982 143 TIFAYGVTSSGKTHTM 158 (861)
Q Consensus 143 tIfAYGqTGSGKTyTM 158 (861)
.|+-.|..|||||+..
T Consensus 14 ~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQC 29 (199)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999865
No 378
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=20.29 E-value=36 Score=40.47 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=14.6
Q ss_pred eeEEEecccCCCCccccc
Q 002982 142 GTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 142 ~tIfAYGqTGSGKTyTM~ 159 (861)
-.++..|+||||||+.+.
T Consensus 233 ~~vlv~ApTGSGKT~a~~ 250 (666)
T 3o8b_A 233 QVAHLHAPTGSGKSTKVP 250 (666)
T ss_dssp EEEEEECCTTSCTTTHHH
T ss_pred CeEEEEeCCchhHHHHHH
Confidence 356788999999997764
No 379
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=20.25 E-value=37 Score=29.41 Aligned_cols=27 Identities=41% Similarity=0.534 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhHHhHhhhhhhhhhchh
Q 002982 686 AEIEELNRKVTELTEAKEQLELRNQKL 712 (861)
Q Consensus 686 ~e~e~lk~~~~~l~e~k~~l~~~n~kl 712 (861)
.|.|.||-+..+|.|-+.+||..|.=|
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~L 41 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLL 41 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366889999999999998888877543
No 380
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=20.24 E-value=36 Score=36.85 Aligned_cols=30 Identities=33% Similarity=0.398 Sum_probs=21.3
Q ss_pred HHHHHHhhc--CC--CeeEEEecccCCCCccccc
Q 002982 130 QHVVSGAMD--GI--NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 130 ~plV~~vl~--Gy--N~tIfAYGqTGSGKTyTM~ 159 (861)
-+-++.++. |+ ...+.-||++|||||..+.
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal 79 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVAL 79 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHH
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHH
Confidence 344566665 43 3457889999999998864
No 381
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=20.16 E-value=30 Score=35.00 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=15.2
Q ss_pred HHHhhcCCCeeEEEecccCCCCc-ccc
Q 002982 133 VSGAMDGINGTIFAYGVTSSGKT-HTM 158 (861)
Q Consensus 133 V~~vl~GyN~tIfAYGqTGSGKT-yTM 158 (861)
|.......-...|-||+.||||| +-|
T Consensus 12 ~~~~~~~~g~l~fiyG~MgsGKTt~Ll 38 (195)
T 1w4r_A 12 VPRGSKTRGQIQVILGPMFSGKSTELM 38 (195)
T ss_dssp -------CCEEEEEEECTTSCHHHHHH
T ss_pred cccCCCCceEEEEEECCCCCcHHHHHH
Confidence 33333334457899999999999 444
No 382
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=20.04 E-value=32 Score=33.72 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=18.5
Q ss_pred HHHhhc-CC--CeeEEEecccCCCCccccc
Q 002982 133 VSGAMD-GI--NGTIFAYGVTSSGKTHTMH 159 (861)
Q Consensus 133 V~~vl~-Gy--N~tIfAYGqTGSGKTyTM~ 159 (861)
+|.++. |+ ...+.-+|.+|+|||..+.
T Consensus 19 LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l 48 (251)
T 2zts_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHHHH
T ss_pred HHHhhcCCCCCCeEEEEEeCCCCCHHHHHH
Confidence 455554 43 3457779999999996653
Done!