Query 002985
Match_columns 861
No_of_seqs 395 out of 2397
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 14:44:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002985.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002985hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0317 SpoT Guanosine polypho 100.0 8E-169 2E-173 1460.1 62.1 649 123-845 5-700 (701)
2 PRK10872 relA (p)ppGpp synthet 100.0 3E-161 6E-166 1418.1 57.9 659 126-845 16-740 (743)
3 PRK11092 bifunctional (p)ppGpp 100.0 1E-158 2E-163 1400.8 63.1 636 138-845 12-699 (702)
4 TIGR00691 spoT_relA (p)ppGpp s 100.0 2E-149 5E-154 1325.7 60.2 626 152-845 1-683 (683)
5 KOG1157 Predicted guanosine po 100.0 2.5E-72 5.5E-77 602.4 18.7 405 141-601 69-524 (543)
6 PF13328 HD_4: HD domain; PDB: 100.0 1.1E-29 2.3E-34 251.3 1.2 132 152-289 1-132 (153)
7 PF04607 RelA_SpoT: Region fou 99.9 3E-26 6.5E-31 215.4 10.4 110 351-474 1-113 (115)
8 cd05399 NT_Rel-Spo_like Nucleo 99.9 5.6E-26 1.2E-30 218.3 11.4 123 327-464 4-129 (129)
9 COG2357 PpGpp synthetase catal 99.9 3.2E-24 7E-29 221.3 11.4 116 347-474 53-178 (231)
10 PF02824 TGS: TGS domain; Int 99.7 1.5E-17 3.2E-22 140.0 5.7 60 541-600 1-60 (60)
11 PF13291 ACT_4: ACT domain; PD 99.4 6.9E-13 1.5E-17 117.1 10.9 77 769-845 3-80 (80)
12 cd01666 TGS_DRG_C TGS_DRG_C: 99.3 4.1E-12 8.8E-17 111.7 5.5 60 541-600 2-75 (75)
13 cd01669 TGS_Ygr210_C TGS_Ygr21 99.2 2.8E-11 6E-16 106.8 4.8 52 548-600 22-76 (76)
14 cd04877 ACT_TyrR N-terminal AC 99.1 3.6E-10 7.7E-15 98.7 9.2 68 774-846 2-70 (74)
15 cd04887 ACT_MalLac-Enz ACT_Mal 99.0 1.5E-09 3.1E-14 94.0 9.9 69 775-844 2-71 (74)
16 cd04888 ACT_PheB-BS C-terminal 99.0 2.5E-09 5.5E-14 92.7 9.6 71 774-845 2-74 (76)
17 cd01668 TGS_RelA_SpoT TGS_RelA 98.9 4E-09 8.6E-14 87.5 7.4 60 541-600 1-60 (60)
18 cd04878 ACT_AHAS N-terminal AC 98.7 1.8E-07 3.9E-12 79.0 9.8 70 774-844 2-72 (72)
19 PRK04435 hypothetical protein; 98.6 4.4E-07 9.5E-12 90.0 11.0 74 771-845 68-143 (147)
20 cd04881 ACT_HSDH-Hom ACT_HSDH_ 98.6 2.8E-07 6.1E-12 79.2 8.4 69 775-843 3-72 (79)
21 PRK08577 hypothetical protein; 98.5 8.3E-07 1.8E-11 86.7 10.7 74 772-845 56-131 (136)
22 cd04938 TGS_Obg-like TGS_Obg-l 98.5 2.4E-07 5.2E-12 81.9 5.8 52 549-600 24-76 (76)
23 cd01616 TGS The TGS domain, na 98.5 4.4E-07 9.5E-12 73.7 7.0 59 542-600 2-60 (60)
24 cd04901 ACT_3PGDH C-terminal A 98.5 1.9E-07 4.2E-12 79.4 4.9 65 775-844 2-67 (69)
25 PRK09602 translation-associate 98.4 2.6E-07 5.5E-12 105.4 5.3 63 539-601 318-395 (396)
26 PRK06737 acetolactate synthase 98.4 3E-06 6.5E-11 74.9 9.9 72 774-845 4-75 (76)
27 cd04879 ACT_3PGDH-like ACT_3PG 98.4 1.3E-06 2.7E-11 73.4 7.3 68 775-844 2-69 (71)
28 PRK13562 acetolactate synthase 98.4 2.7E-06 5.9E-11 76.2 9.6 71 774-844 4-75 (84)
29 cd01667 TGS_ThrRS_N TGS _ThrRS 98.3 2.4E-06 5.2E-11 69.8 7.1 58 543-600 3-60 (61)
30 cd04903 ACT_LSD C-terminal ACT 98.2 5.2E-06 1.1E-10 69.9 7.9 68 775-844 2-69 (71)
31 PF01842 ACT: ACT domain; Int 98.2 6.9E-06 1.5E-10 68.7 8.3 65 774-839 2-66 (66)
32 PRK11152 ilvM acetolactate syn 98.2 9E-06 1.9E-10 72.0 9.1 71 774-845 5-75 (76)
33 cd04886 ACT_ThrD-II-like C-ter 98.2 7.7E-06 1.7E-10 69.1 8.3 63 775-837 1-67 (73)
34 cd04876 ACT_RelA-SpoT ACT dom 98.1 1.7E-05 3.8E-10 64.8 9.7 70 775-845 1-71 (71)
35 cd04874 ACT_Af1403 N-terminal 98.1 1.8E-05 3.9E-10 66.9 9.3 70 774-845 2-71 (72)
36 PRK07334 threonine dehydratase 98.1 1.2E-05 2.6E-10 92.1 10.5 70 770-839 324-397 (403)
37 PRK08178 acetolactate synthase 98.1 2.4E-05 5.2E-10 72.0 9.4 72 773-845 9-80 (96)
38 TIGR03276 Phn-HD phosphonate d 98.0 1.1E-05 2.3E-10 82.4 7.5 70 160-229 13-100 (179)
39 PRK11895 ilvH acetolactate syn 98.0 4E-05 8.6E-10 77.2 10.3 72 774-845 4-75 (161)
40 PF13710 ACT_5: ACT domain; PD 97.9 4.2E-05 9.1E-10 65.3 8.2 63 781-843 1-63 (63)
41 TIGR00119 acolac_sm acetolacta 97.9 6.5E-05 1.4E-09 75.4 10.3 72 774-845 3-74 (157)
42 PRK00413 thrS threonyl-tRNA sy 97.9 1.8E-05 3.9E-10 95.7 7.0 64 540-603 1-64 (638)
43 CHL00100 ilvH acetohydroxyacid 97.7 0.00011 2.4E-09 75.0 8.4 72 774-845 4-75 (174)
44 COG1163 DRG Predicted GTPase [ 97.7 3.4E-05 7.4E-10 84.5 4.7 62 539-600 289-364 (365)
45 cd04875 ACT_F4HF-DF N-terminal 97.7 0.00024 5.3E-09 61.8 8.7 61 775-835 2-67 (74)
46 cd04902 ACT_3PGDH-xct C-termin 97.5 0.00031 6.7E-09 60.1 7.7 68 775-844 2-69 (73)
47 cd04870 ACT_PSP_1 CT domains f 97.5 0.00035 7.5E-09 61.2 7.9 64 775-840 2-69 (75)
48 cd04869 ACT_GcvR_2 ACT domains 97.5 0.00044 9.5E-09 60.8 7.7 61 775-835 2-70 (81)
49 cd04893 ACT_GcvR_1 ACT domains 97.4 0.00058 1.2E-08 60.3 7.8 64 774-839 3-69 (77)
50 PTZ00258 GTP-binding protein; 97.4 0.00022 4.9E-09 81.2 6.1 66 535-601 300-387 (390)
51 PF13740 ACT_6: ACT domain; PD 97.3 0.00073 1.6E-08 59.4 7.4 62 774-837 4-65 (76)
52 cd04900 ACT_UUR-like_1 ACT dom 97.3 0.0018 3.9E-08 56.4 9.4 62 774-836 3-71 (73)
53 cd04884 ACT_CBS C-terminal ACT 97.3 0.0013 2.9E-08 56.8 8.2 62 775-837 2-66 (72)
54 PRK00194 hypothetical protein; 97.2 0.00036 7.8E-09 63.0 4.7 68 774-843 5-74 (90)
55 cd04925 ACT_ACR_2 ACT domain-c 97.2 0.0022 4.7E-08 56.2 8.9 61 774-836 2-70 (74)
56 cd04927 ACT_ACR-like_2 Second 97.2 0.002 4.3E-08 56.9 8.4 65 774-839 2-72 (76)
57 PRK05659 sulfur carrier protei 97.2 0.0012 2.7E-08 56.3 6.9 55 545-601 4-62 (66)
58 cd04889 ACT_PDH-BS-like C-term 97.1 0.0018 4E-08 53.0 7.3 53 775-829 1-53 (56)
59 cd04899 ACT_ACR-UUR-like_2 C-t 97.1 0.003 6.5E-08 53.7 8.8 61 774-836 2-68 (70)
60 COG4492 PheB ACT domain-contai 97.1 0.0021 4.5E-08 62.1 8.4 73 772-845 72-146 (150)
61 PRK06437 hypothetical protein; 97.1 0.002 4.3E-08 55.7 7.2 60 540-601 4-63 (67)
62 cd04905 ACT_CM-PDT C-terminal 97.0 0.0039 8.5E-08 55.1 9.1 64 774-837 3-69 (80)
63 cd04872 ACT_1ZPV ACT domain pr 97.0 0.0015 3.3E-08 58.9 6.4 64 774-839 3-71 (88)
64 cd04908 ACT_Bt0572_1 N-termina 97.0 0.0038 8.3E-08 53.1 8.4 56 774-832 3-58 (66)
65 COG1707 ACT domain-containing 97.0 0.0019 4.1E-08 64.6 7.1 75 774-849 4-78 (218)
66 cd04896 ACT_ACR-like_3 ACT dom 97.0 0.0039 8.4E-08 55.3 8.3 61 774-836 2-70 (75)
67 cd04885 ACT_ThrD-I Tandem C-te 97.0 0.0026 5.7E-08 54.6 7.0 60 775-836 1-61 (68)
68 cd00565 ThiS ThiaminS ubiquiti 97.0 0.002 4.4E-08 55.0 6.3 53 547-601 5-61 (65)
69 cd04873 ACT_UUR-ACR-like ACT d 97.0 0.0049 1.1E-07 52.0 8.6 61 774-836 2-68 (70)
70 cd04883 ACT_AcuB C-terminal AC 96.9 0.006 1.3E-07 52.2 9.0 58 774-831 3-61 (72)
71 cd04882 ACT_Bt0572_2 C-termina 96.9 0.0043 9.3E-08 51.7 7.6 57 775-835 2-58 (65)
72 cd04895 ACT_ACR_1 ACT domain-c 96.8 0.0079 1.7E-07 52.9 9.1 60 774-835 3-69 (72)
73 cd04909 ACT_PDH-BS C-terminal 96.8 0.0067 1.4E-07 51.7 8.4 62 774-836 3-64 (69)
74 cd04880 ACT_AAAH-PDT-like ACT 96.8 0.0067 1.4E-07 52.8 8.5 63 775-837 2-67 (75)
75 cd04897 ACT_ACR_3 ACT domain-c 96.8 0.0078 1.7E-07 53.4 8.8 62 773-836 2-70 (75)
76 cd04926 ACT_ACR_4 C-terminal 96.8 0.0042 9.1E-08 54.1 6.9 46 774-821 3-48 (72)
77 cd02116 ACT ACT domains are co 96.8 0.0074 1.6E-07 46.5 7.7 60 775-835 1-60 (60)
78 PRK01777 hypothetical protein; 96.8 0.0025 5.3E-08 59.0 5.6 54 549-602 19-77 (95)
79 PRK12444 threonyl-tRNA synthet 96.7 0.0027 5.9E-08 77.1 7.2 65 538-602 3-67 (639)
80 PRK06944 sulfur carrier protei 96.7 0.0048 1E-07 52.5 6.5 52 547-601 6-61 (65)
81 PRK07440 hypothetical protein; 96.7 0.0051 1.1E-07 53.7 6.7 54 546-601 9-66 (70)
82 PRK13011 formyltetrahydrofolat 96.7 0.0072 1.6E-07 66.5 9.4 68 772-839 7-78 (286)
83 PRK11589 gcvR glycine cleavage 96.7 0.0059 1.3E-07 63.4 8.2 63 773-835 96-166 (190)
84 cd04928 ACT_TyrKc Uncharacteri 96.6 0.014 3.1E-07 50.8 8.5 56 774-830 3-59 (68)
85 TIGR01683 thiS thiamine biosyn 96.5 0.0082 1.8E-07 51.2 6.8 53 547-601 4-60 (64)
86 PRK07696 sulfur carrier protei 96.4 0.0075 1.6E-07 52.1 6.2 53 547-601 6-63 (67)
87 PRK08364 sulfur carrier protei 96.4 0.009 1.9E-07 52.0 6.5 50 550-601 17-66 (70)
88 PLN02908 threonyl-tRNA synthet 96.4 0.0058 1.2E-07 74.9 7.0 65 539-603 50-115 (686)
89 PRK08053 sulfur carrier protei 96.3 0.013 2.9E-07 50.3 6.8 54 546-601 5-62 (66)
90 COG3830 ACT domain-containing 96.2 0.0035 7.5E-08 57.0 3.0 48 772-821 3-50 (90)
91 COG2104 ThiS Sulfur transfer p 96.2 0.014 3.1E-07 50.8 6.5 52 548-601 9-64 (68)
92 TIGR00655 PurU formyltetrahydr 96.2 0.016 3.4E-07 63.7 8.5 65 775-839 3-73 (280)
93 PRK06027 purU formyltetrahydro 96.0 0.016 3.4E-07 63.9 7.1 67 773-839 7-78 (286)
94 PRK09601 GTP-binding protein Y 95.9 0.0097 2.1E-07 67.5 5.6 65 535-600 276-362 (364)
95 COG0440 IlvH Acetolactate synt 95.9 0.022 4.8E-07 57.4 7.4 72 774-845 6-80 (163)
96 PRK06488 sulfur carrier protei 95.8 0.026 5.7E-07 48.2 6.3 52 547-601 6-61 (65)
97 TIGR01127 ilvA_1Cterm threonin 95.8 0.036 7.9E-07 63.1 9.4 67 771-837 304-374 (380)
98 cd04931 ACT_PAH ACT domain of 95.8 0.048 1E-06 50.0 8.4 68 773-840 15-84 (90)
99 cd04904 ACT_AAAH ACT domain of 95.7 0.052 1.1E-06 47.6 8.0 64 774-837 2-66 (74)
100 cd04906 ACT_ThrD-I_1 First of 95.6 0.047 1E-06 49.1 7.7 60 774-836 3-64 (85)
101 PRK11790 D-3-phosphoglycerate 95.6 0.025 5.3E-07 65.4 7.3 68 774-845 340-407 (409)
102 PRK11589 gcvR glycine cleavage 95.5 0.021 4.4E-07 59.4 5.6 68 773-842 9-79 (190)
103 cd04929 ACT_TPH ACT domain of 95.5 0.071 1.5E-06 47.1 8.2 63 775-837 3-66 (74)
104 PRK08198 threonine dehydratase 95.5 0.055 1.2E-06 62.2 9.6 66 772-837 327-396 (404)
105 COG3283 TyrR Transcriptional r 95.5 0.025 5.4E-07 63.3 6.3 73 774-851 2-75 (511)
106 PF03658 Ub-RnfH: RnfH family 95.4 0.012 2.6E-07 53.2 2.9 58 545-602 9-74 (84)
107 PLN02799 Molybdopterin synthas 95.4 0.03 6.5E-07 49.9 5.5 54 547-600 19-77 (82)
108 PRK13010 purU formyltetrahydro 95.4 0.046 1E-06 60.3 8.0 73 774-847 11-89 (289)
109 PRK06382 threonine dehydratase 95.3 0.066 1.4E-06 61.7 9.3 67 772-838 330-400 (406)
110 PRK10820 DNA-binding transcrip 95.3 0.032 6.9E-07 66.4 6.9 72 774-850 2-74 (520)
111 cd04930 ACT_TH ACT domain of t 94.9 0.16 3.5E-06 48.7 9.1 78 762-839 29-109 (115)
112 PF14451 Ub-Mut7C: Mut7-C ubiq 94.7 0.072 1.6E-06 48.0 5.8 49 550-602 26-77 (81)
113 PRK06083 sulfur carrier protei 94.6 0.076 1.7E-06 48.1 5.9 55 545-601 22-80 (84)
114 PRK08526 threonine dehydratase 94.5 0.12 2.7E-06 59.6 8.9 66 772-837 326-395 (403)
115 PRK03059 PII uridylyl-transfer 94.5 0.11 2.3E-06 65.6 8.9 76 762-839 776-855 (856)
116 cd00754 MoaD Ubiquitin domain 94.5 0.079 1.7E-06 46.5 5.6 52 549-600 18-75 (80)
117 PRK05863 sulfur carrier protei 94.4 0.086 1.9E-06 45.2 5.5 54 546-601 5-61 (65)
118 PRK05007 PII uridylyl-transfer 94.4 0.14 2.9E-06 64.9 9.4 72 762-835 798-875 (884)
119 COG2716 GcvR Glycine cleavage 94.3 0.053 1.1E-06 55.0 4.5 37 772-808 92-128 (176)
120 TIGR01327 PGDH D-3-phosphoglyc 94.3 0.063 1.4E-06 64.0 6.0 68 775-844 454-521 (525)
121 PRK13581 D-3-phosphoglycerate 94.3 0.071 1.5E-06 63.5 6.5 68 775-844 455-522 (526)
122 PRK05092 PII uridylyl-transfer 94.3 0.11 2.5E-06 65.9 8.6 74 762-837 833-913 (931)
123 PRK03381 PII uridylyl-transfer 94.1 0.096 2.1E-06 65.3 7.2 58 762-821 697-754 (774)
124 PRK06349 homoserine dehydrogen 94.0 0.15 3.3E-06 59.2 8.3 69 774-843 350-419 (426)
125 TIGR01693 UTase_glnD [Protein- 93.9 0.16 3.4E-06 64.1 8.5 72 762-835 769-846 (850)
126 cd04871 ACT_PSP_2 ACT domains 93.8 0.092 2E-06 47.3 4.7 66 775-840 2-78 (84)
127 PRK00275 glnD PII uridylyl-tra 93.7 0.2 4.4E-06 63.3 9.2 64 771-836 813-883 (895)
128 TIGR00719 sda_beta L-serine de 93.6 0.18 3.9E-06 53.0 7.2 47 775-821 151-197 (208)
129 KOG2663 Acetolactate synthase, 93.4 0.13 2.7E-06 55.0 5.4 72 774-845 79-150 (309)
130 PF02597 ThiS: ThiS family; I 93.3 0.13 2.7E-06 44.8 4.6 53 549-601 14-73 (77)
131 PRK03381 PII uridylyl-transfer 93.2 0.26 5.6E-06 61.5 8.8 72 762-836 590-664 (774)
132 PRK01759 glnD PII uridylyl-tra 93.1 0.19 4.1E-06 63.3 7.5 59 761-821 772-830 (854)
133 PRK14707 hypothetical protein; 93.1 0.41 9E-06 63.3 10.3 153 297-475 2263-2424(2710)
134 PF06071 YchF-GTPase_C: Protei 93.1 0.093 2E-06 47.5 3.4 52 549-600 13-83 (84)
135 PRK11840 bifunctional sulfur c 93.0 0.21 4.6E-06 55.7 6.8 55 547-603 6-64 (326)
136 COG4747 ACT domain-containing 92.7 0.25 5.4E-06 47.3 5.9 68 774-844 5-75 (142)
137 COG2150 Predicted regulator of 92.7 0.38 8.2E-06 48.4 7.3 72 772-845 95-166 (167)
138 PRK04374 PII uridylyl-transfer 92.6 0.29 6.3E-06 61.8 8.1 58 762-821 786-843 (869)
139 PRK08818 prephenate dehydrogen 92.4 0.41 8.8E-06 54.8 8.2 64 772-836 295-361 (370)
140 PRK06545 prephenate dehydrogen 91.8 0.34 7.3E-06 55.0 6.8 59 772-831 290-348 (359)
141 PRK11899 prephenate dehydratas 91.3 1 2.2E-05 49.7 9.5 68 772-839 194-264 (279)
142 TIGR02079 THD1 threonine dehyd 91.2 1.1 2.4E-05 51.9 10.3 67 772-838 325-392 (409)
143 PRK08639 threonine dehydratase 91.1 0.88 1.9E-05 52.8 9.2 67 772-838 336-403 (420)
144 COG0788 PurU Formyltetrahydrof 90.7 0.51 1.1E-05 51.2 6.3 65 773-837 8-74 (287)
145 PRK05007 PII uridylyl-transfer 90.4 0.96 2.1E-05 57.4 9.5 73 763-836 692-770 (884)
146 COG3978 Acetolactate synthase 90.4 0.79 1.7E-05 41.0 6.0 69 774-845 5-75 (86)
147 PRK01759 glnD PII uridylyl-tra 90.2 0.96 2.1E-05 57.2 9.2 74 762-836 667-746 (854)
148 PRK00907 hypothetical protein; 90.0 1.7 3.7E-05 40.2 8.3 68 774-841 19-89 (92)
149 TIGR01682 moaD molybdopterin c 90.0 0.87 1.9E-05 40.3 6.3 52 549-600 18-75 (80)
150 PRK05092 PII uridylyl-transfer 89.9 1.1 2.5E-05 57.0 9.6 75 762-837 722-803 (931)
151 PRK15385 magnesium transport p 89.7 2.1 4.5E-05 45.8 9.8 71 774-844 144-219 (225)
152 PRK04374 PII uridylyl-transfer 89.5 1.3 2.8E-05 56.1 9.5 74 762-836 680-757 (869)
153 cd04913 ACT_AKii-LysC-BS-like_ 89.4 1.1 2.3E-05 37.8 6.1 56 779-835 9-65 (75)
154 cd04867 TGS_YchF_C TGS_YchF_C: 89.3 0.39 8.5E-06 43.4 3.4 51 549-599 13-82 (83)
155 COG2914 Uncharacterized protei 89.1 0.56 1.2E-05 43.3 4.3 52 550-601 20-76 (99)
156 PRK04998 hypothetical protein; 89.1 2.2 4.8E-05 38.9 8.3 68 774-841 17-85 (88)
157 TIGR01693 UTase_glnD [Protein- 89.1 1.5 3.3E-05 55.4 9.8 64 771-835 667-737 (850)
158 PF03927 NapD: NapD protein; 88.8 1.4 3.1E-05 39.4 6.7 64 773-845 6-71 (79)
159 TIGR01270 Trp_5_monoox tryptop 88.5 1.8 3.9E-05 50.7 9.0 73 772-844 31-105 (464)
160 COG2844 GlnD UTP:GlnB (protein 88.4 0.86 1.9E-05 56.1 6.5 58 762-821 781-838 (867)
161 PRK00341 hypothetical protein; 88.2 2.6 5.7E-05 38.8 8.2 68 774-841 19-88 (91)
162 PF13840 ACT_7: ACT domain ; P 88.2 2.6 5.6E-05 36.1 7.7 51 773-830 7-62 (65)
163 PRK12483 threonine dehydratase 87.9 1.7 3.7E-05 51.9 8.7 62 772-836 345-408 (521)
164 PLN02550 threonine dehydratase 87.5 1.7 3.7E-05 52.6 8.3 62 772-836 417-479 (591)
165 COG4747 ACT domain-containing 87.1 2.1 4.5E-05 41.2 6.9 58 774-833 71-128 (142)
166 cd04891 ACT_AK-LysC-DapG-like_ 87.0 1.8 3.8E-05 34.8 5.8 50 779-829 8-58 (61)
167 PRK00275 glnD PII uridylyl-tra 86.8 1.9 4.2E-05 54.8 8.7 65 772-837 704-776 (895)
168 PRK10622 pheA bifunctional cho 86.3 3.1 6.7E-05 48.0 9.3 67 773-839 298-367 (386)
169 COG0077 PheA Prephenate dehydr 85.9 4 8.8E-05 45.0 9.4 70 772-841 194-266 (279)
170 PRK03059 PII uridylyl-transfer 85.4 2.7 6E-05 53.2 9.0 64 772-836 678-747 (856)
171 PRK10553 assembly protein for 85.3 3.2 6.9E-05 38.0 7.0 61 779-845 12-74 (87)
172 TIGR01124 ilvA_2Cterm threonin 85.2 3.1 6.7E-05 49.6 8.9 63 772-837 325-388 (499)
173 PRK02047 hypothetical protein; 84.7 5.9 0.00013 36.5 8.5 68 774-841 18-88 (91)
174 TIGR01268 Phe4hydrox_tetr phen 83.7 5.7 0.00012 46.3 9.8 67 772-838 16-84 (436)
175 cd04932 ACT_AKiii-LysC-EC_1 AC 83.4 4.4 9.6E-05 35.8 6.9 56 779-840 11-71 (75)
176 PF04359 DUF493: Protein of un 82.1 3.4 7.4E-05 37.2 5.9 68 774-841 12-82 (85)
177 PRK09224 threonine dehydratase 81.9 4.7 0.0001 48.1 8.6 64 772-838 328-393 (504)
178 TIGR01687 moaD_arch MoaD famil 81.8 3.3 7.1E-05 37.2 5.7 50 550-600 19-83 (88)
179 PRK09169 hypothetical protein; 80.1 11 0.00025 51.3 11.7 108 350-475 1917-2034(2316)
180 cd04934 ACT_AK-Hom3_1 CT domai 79.9 4.1 8.8E-05 35.8 5.4 55 780-840 12-69 (73)
181 PRK11898 prephenate dehydratas 79.9 7.9 0.00017 42.8 8.9 67 773-839 197-267 (283)
182 COG0012 Predicted GTPase, prob 79.2 0.54 1.2E-05 53.4 -0.4 59 539-598 297-368 (372)
183 cd04935 ACT_AKiii-DAPDC_1 ACT 79.2 5.5 0.00012 35.1 6.0 56 779-840 11-71 (75)
184 PLN02317 arogenate dehydratase 78.9 8.9 0.00019 44.2 9.1 67 772-838 283-366 (382)
185 COG2061 ACT-domain-containing 78.2 9.1 0.0002 38.6 7.7 72 773-845 6-79 (170)
186 cd04890 ACT_AK-like_1 ACT doma 77.0 6.3 0.00014 32.7 5.5 51 779-835 10-62 (62)
187 PRK09977 putative Mg(2+) trans 76.7 12 0.00025 40.0 8.6 67 775-845 147-214 (215)
188 cd04892 ACT_AK-like_2 ACT doma 76.6 9.8 0.00021 30.6 6.5 48 781-832 12-60 (65)
189 TIGR00092 GTP-binding protein 76.6 2.6 5.6E-05 48.3 4.0 61 540-600 284-366 (368)
190 smart00471 HDc Metal dependent 75.7 1.4 3.1E-05 39.7 1.4 37 168-204 2-44 (124)
191 cd04936 ACT_AKii-LysC-BS-like_ 75.5 9.5 0.00021 31.0 6.2 48 780-833 11-59 (63)
192 cd04937 ACT_AKi-DapG-BS_2 ACT 75.3 11 0.00023 31.8 6.5 51 775-831 4-58 (64)
193 cd04914 ACT_AKi-DapG-BS_1 ACT 75.0 12 0.00026 32.1 6.8 58 774-837 3-62 (67)
194 cd04868 ACT_AK-like ACT domain 74.2 11 0.00024 29.5 6.2 43 781-827 12-55 (60)
195 PRK11130 moaD molybdopterin sy 73.6 8.1 0.00018 34.4 5.6 46 555-600 24-76 (81)
196 KOG1637 Threonyl-tRNA syntheta 71.9 1.2 2.6E-05 51.7 -0.2 56 545-602 5-61 (560)
197 cd04924 ACT_AK-Arch_2 ACT doma 71.8 15 0.00033 30.2 6.7 48 781-832 13-61 (66)
198 cd04912 ACT_AKiii-LysC-EC-like 71.8 11 0.00023 33.0 5.9 52 779-836 11-67 (75)
199 cd04923 ACT_AK-LysC-DapG-like_ 71.3 10 0.00022 30.8 5.4 48 780-833 11-59 (63)
200 cd04922 ACT_AKi-HSDH-ThrA_2 AC 71.1 12 0.00026 30.9 5.9 47 780-830 12-59 (66)
201 KOG1487 GTP-binding protein DR 71.0 2 4.4E-05 46.7 1.4 62 539-600 281-357 (358)
202 cd04919 ACT_AK-Hom3_2 ACT doma 69.9 13 0.00029 30.8 5.9 49 780-832 12-61 (66)
203 cd04916 ACT_AKiii-YclM-BS_2 AC 69.7 18 0.00039 29.8 6.6 49 780-832 12-61 (66)
204 PF01037 AsnC_trans_reg: AsnC 69.4 25 0.00054 29.8 7.6 57 784-845 10-68 (74)
205 COG4341 Predicted HD phosphohy 69.3 4.4 9.6E-05 41.1 3.2 46 152-200 13-60 (186)
206 COG2716 GcvR Glycine cleavage 69.3 4.9 0.00011 41.2 3.5 67 774-840 7-74 (176)
207 PF01966 HD: HD domain; Inter 68.8 2 4.3E-05 39.3 0.6 31 172-202 2-39 (122)
208 KOG1486 GTP-binding protein DR 67.7 6.3 0.00014 42.9 4.1 52 549-600 305-363 (364)
209 cd04933 ACT_AK1-AT_1 ACT domai 67.0 16 0.00035 32.7 6.0 52 779-836 11-70 (78)
210 COG2921 Uncharacterized conser 64.8 41 0.00089 31.0 8.1 69 774-842 17-88 (90)
211 cd04915 ACT_AK-Ectoine_2 ACT d 63.4 21 0.00045 30.5 5.9 48 781-832 13-61 (66)
212 cd04907 ACT_ThrD-I_2 Second of 62.6 34 0.00075 30.7 7.3 61 774-837 3-64 (81)
213 PRK14707 hypothetical protein; 61.7 31 0.00067 47.1 9.3 103 354-474 2544-2654(2710)
214 TIGR01269 Tyr_3_monoox tyrosin 61.2 32 0.00069 40.4 8.4 66 775-840 40-110 (457)
215 COG1418 Predicted HD superfami 59.7 8.5 0.00018 41.1 3.4 37 167-203 33-74 (222)
216 TIGR02988 YaaA_near_RecF S4 do 59.7 11 0.00023 31.5 3.4 23 576-598 35-58 (59)
217 cd00077 HDc Metal dependent ph 59.2 5.1 0.00011 36.7 1.5 35 170-204 2-44 (145)
218 PRK06635 aspartate kinase; Rev 59.1 21 0.00046 41.0 6.8 55 779-834 270-325 (404)
219 PRK01002 nickel responsive reg 57.1 1E+02 0.0022 30.7 10.2 83 763-848 47-133 (141)
220 TIGR03401 cyanamide_fam HD dom 56.6 16 0.00034 39.3 4.8 50 145-201 37-95 (228)
221 cd04918 ACT_AK1-AT_2 ACT domai 54.7 35 0.00077 28.8 5.8 47 781-831 12-59 (65)
222 PF04350 PilO: Pilus assembly 54.4 45 0.00098 32.2 7.3 65 780-844 50-117 (144)
223 PF00585 Thr_dehydrat_C: C-ter 54.2 21 0.00045 32.8 4.5 65 772-838 10-75 (91)
224 PF13510 Fer2_4: 2Fe-2S iron-s 54.1 11 0.00023 33.9 2.6 57 542-598 4-79 (82)
225 COG3062 NapD Uncharacterized p 54.0 57 0.0012 30.3 7.2 62 778-845 12-74 (94)
226 cd01764 Urm1 Urm1-like ubuitin 53.8 29 0.00063 32.1 5.4 47 555-601 27-90 (94)
227 smart00363 S4 S4 RNA-binding d 52.7 13 0.00029 29.3 2.7 25 576-600 27-52 (60)
228 cd04921 ACT_AKi-HSDH-ThrA-like 51.8 50 0.0011 28.5 6.5 48 779-830 11-59 (80)
229 COG1977 MoaD Molybdopterin con 51.6 18 0.00038 32.7 3.6 29 572-600 51-79 (84)
230 cd04920 ACT_AKiii-DAPDC_2 ACT 50.9 43 0.00094 28.2 5.7 46 781-832 12-58 (63)
231 PF01479 S4: S4 domain; Inter 48.7 14 0.00029 29.3 2.1 21 576-596 27-48 (48)
232 PRK07569 bidirectional hydroge 48.3 28 0.00061 37.3 5.1 56 544-599 6-77 (234)
233 PF04455 Saccharop_dh_N: LOR/S 48.0 65 0.0014 30.6 6.8 58 782-840 14-74 (103)
234 TIGR00656 asp_kin_monofn aspar 47.4 57 0.0012 37.5 7.8 58 773-834 261-322 (401)
235 cd01809 Scythe_N Ubiquitin-lik 47.2 71 0.0015 26.9 6.6 61 540-600 2-71 (72)
236 PF14453 ThiS-like: ThiS-like 45.7 45 0.00098 28.3 4.8 50 547-600 6-55 (57)
237 COG2316 Predicted hydrolase (H 45.3 24 0.00051 36.2 3.6 58 170-227 47-118 (212)
238 COG1713 Predicted HD superfami 44.9 19 0.00041 37.6 3.0 35 171-205 18-57 (187)
239 cd01806 Nedd8 Nebb8-like ubiq 43.9 64 0.0014 27.5 5.8 62 540-601 2-72 (76)
240 TIGR00277 HDIG uncharacterized 43.5 23 0.0005 30.0 3.0 32 170-201 4-40 (80)
241 PRK13480 3'-5' exoribonuclease 42.4 67 0.0015 36.2 7.1 75 123-201 105-196 (314)
242 TIGR00656 asp_kin_monofn aspar 42.0 55 0.0012 37.7 6.6 55 773-833 338-396 (401)
243 PF00498 FHA: FHA domain; Int 41.1 18 0.00038 30.5 1.8 23 576-598 43-67 (68)
244 PF08753 NikR_C: NikR C termin 40.8 2.3E+02 0.005 25.2 8.9 61 782-844 12-73 (78)
245 PRK08210 aspartate kinase I; R 39.8 80 0.0017 36.5 7.5 55 774-834 273-329 (403)
246 cd04917 ACT_AKiii-LysC-EC_2 AC 39.3 92 0.002 25.9 5.9 46 781-832 13-59 (64)
247 PRK00106 hypothetical protein; 39.3 25 0.00055 42.3 3.4 34 168-201 348-386 (535)
248 cd00165 S4 S4/Hsp/ tRNA synthe 39.1 32 0.00069 27.9 3.1 25 576-600 27-52 (70)
249 TIGR00488 putative HD superfam 38.4 25 0.00054 35.2 2.7 32 171-202 9-45 (158)
250 PRK06635 aspartate kinase; Rev 38.1 68 0.0015 36.9 6.5 53 773-831 341-397 (404)
251 COG1188 Ribosome-associated he 37.4 42 0.0009 31.7 3.7 27 576-602 35-61 (100)
252 PF10741 T2SM_b: Type II secre 37.4 1.1E+02 0.0024 28.7 6.8 57 783-839 16-75 (110)
253 PRK11198 LysM domain/BON super 36.8 1.1E+02 0.0024 30.5 7.0 67 782-851 24-90 (147)
254 PRK07431 aspartate kinase; Pro 36.7 66 0.0014 39.2 6.4 56 779-835 278-334 (587)
255 KOG1491 Predicted GTP-binding 36.3 28 0.00061 39.6 2.9 60 539-598 306-387 (391)
256 PRK12703 tRNA 2'-O-methylase; 36.3 43 0.00093 38.2 4.4 58 171-228 188-257 (339)
257 cd04910 ACT_AK-Ectoine_1 ACT d 35.8 94 0.002 27.5 5.5 51 780-836 12-62 (71)
258 PRK10119 putative hydrolase; P 35.8 71 0.0015 34.5 5.8 51 149-202 7-62 (231)
259 TIGR00295 conserved hypothetic 35.4 35 0.00077 34.5 3.3 57 169-226 12-86 (164)
260 TIGR00657 asp_kinases aspartat 34.7 1.2E+02 0.0025 35.6 7.8 64 773-840 303-369 (441)
261 KOG3820 Aromatic amino acid hy 34.2 1.3E+02 0.0027 35.0 7.5 65 773-837 37-102 (461)
262 COG1078 HD superfamily phospho 34.1 20 0.00044 41.9 1.4 56 143-205 26-99 (421)
263 PF11976 Rad60-SLD: Ubiquitin- 33.9 83 0.0018 26.8 4.9 60 540-599 2-71 (72)
264 PF01709 Transcrip_reg: Transc 33.5 78 0.0017 34.2 5.6 61 779-844 169-230 (234)
265 PRK11169 leucine-responsive tr 33.3 1.5E+02 0.0032 29.9 7.4 70 775-849 78-150 (164)
266 PF09383 NIL: NIL domain; Int 32.9 1.4E+02 0.0031 25.8 6.3 52 785-837 18-69 (76)
267 TIGR00384 dhsB succinate dehyd 32.8 45 0.00097 35.3 3.7 45 551-595 19-78 (220)
268 cd01803 Ubiquitin Ubiquitin. U 32.6 1.7E+02 0.0036 24.9 6.6 62 540-601 2-72 (76)
269 PF04031 Las1: Las1-like ; In 31.4 1.4E+02 0.003 30.2 6.7 71 144-230 22-94 (154)
270 PRK04460 nickel responsive reg 31.3 4.5E+02 0.0097 26.2 10.1 83 763-848 45-130 (137)
271 PTZ00305 NADH:ubiquinone oxido 30.6 67 0.0015 35.9 4.6 51 547-597 74-141 (297)
272 PRK00630 nickel responsive reg 29.6 4.8E+02 0.011 26.3 10.1 85 762-849 52-142 (148)
273 PF05153 DUF706: Family of unk 29.3 60 0.0013 35.3 3.8 52 149-200 41-93 (253)
274 PRK08841 aspartate kinase; Val 29.1 1.1E+02 0.0023 35.6 6.2 56 772-833 318-374 (392)
275 cd01805 RAD23_N Ubiquitin-like 29.1 1.4E+02 0.003 25.7 5.6 63 540-602 2-75 (77)
276 PRK02967 nickel responsive reg 28.7 5.7E+02 0.012 25.5 10.3 84 762-848 43-130 (139)
277 PRK11507 ribosome-associated p 28.4 63 0.0014 28.6 3.2 24 576-599 38-62 (70)
278 PRK10885 cca multifunctional t 28.3 1.9E+02 0.0042 33.8 8.1 99 102-201 150-258 (409)
279 PRK07431 aspartate kinase; Pro 28.1 1.2E+02 0.0027 36.8 6.8 57 779-835 447-505 (587)
280 TIGR00657 asp_kinases aspartat 27.0 1.5E+02 0.0032 34.7 7.0 54 773-832 379-436 (441)
281 PF10369 ALS_ss_C: Small subun 26.4 2.3E+02 0.005 25.1 6.4 61 775-846 7-67 (75)
282 cd04911 ACT_AKiii-YclM-BS_1 AC 26.1 1.7E+02 0.0038 26.2 5.6 57 779-841 11-70 (76)
283 PF10584 Proteasome_A_N: Prote 26.0 17 0.00037 25.4 -0.6 16 538-553 2-17 (23)
284 PRK01286 deoxyguanosinetriphos 25.9 56 0.0012 37.2 3.1 33 172-205 64-101 (336)
285 PRK12704 phosphodiesterase; Pr 25.5 65 0.0014 38.8 3.7 34 168-201 333-371 (520)
286 PRK09084 aspartate kinase III; 25.5 2.2E+02 0.0049 33.6 8.1 61 781-848 318-385 (448)
287 PRK12705 hypothetical protein; 25.0 58 0.0012 39.1 3.1 35 168-202 321-360 (508)
288 PRK11179 DNA-binding transcrip 24.9 3.1E+02 0.0067 27.2 7.9 65 775-845 73-139 (153)
289 COG0527 LysC Aspartokinases [A 24.8 1.6E+02 0.0034 35.0 6.6 65 781-849 319-385 (447)
290 PRK08210 aspartate kinase I; R 24.4 1.5E+02 0.0032 34.2 6.3 54 773-832 340-397 (403)
291 TIGR03319 YmdA_YtgF conserved 24.1 62 0.0013 38.9 3.2 32 170-201 329-365 (514)
292 KOG1573 Aldehyde reductase [Ge 24.1 1.2E+02 0.0025 31.2 4.5 33 168-200 94-127 (204)
293 cd01810 ISG15_repeat2 ISG15 ub 23.9 1.7E+02 0.0037 25.3 5.2 60 541-600 1-69 (74)
294 PRK00110 hypothetical protein; 23.5 98 0.0021 33.7 4.3 65 777-846 169-234 (245)
295 PRK07152 nadD putative nicotin 23.4 52 0.0011 37.2 2.3 34 169-202 195-233 (342)
296 PLN02551 aspartokinase 23.4 2.4E+02 0.0052 34.1 7.9 51 781-837 378-436 (521)
297 PRK09181 aspartate kinase; Val 22.9 2E+02 0.0042 34.4 7.0 57 772-832 402-461 (475)
298 PF14473 RD3: RD3 protein 22.8 70 0.0015 31.7 2.7 57 279-336 67-123 (133)
299 cd01763 Sumo Small ubiquitin-r 22.7 3.5E+02 0.0075 24.3 7.1 62 540-601 13-83 (87)
300 PLN02551 aspartokinase 21.8 2.3E+02 0.0051 34.2 7.4 56 773-832 446-504 (521)
301 PRK12378 hypothetical protein; 20.9 1.1E+02 0.0023 33.2 3.9 62 778-844 169-231 (235)
302 PRK05950 sdhB succinate dehydr 20.8 99 0.0021 33.1 3.6 52 550-601 21-89 (232)
303 TIGR02793 nikR nickel-responsi 20.7 8.2E+02 0.018 24.1 10.3 81 763-846 43-126 (129)
304 PRK07860 NADH dehydrogenase su 20.6 1.3E+02 0.0029 38.1 5.2 56 543-598 6-77 (797)
305 PRK12814 putative NADPH-depend 20.3 1.3E+02 0.0028 37.2 5.0 58 543-600 5-78 (652)
306 PF12791 RsgI_N: Anti-sigma fa 20.2 72 0.0016 26.3 1.9 22 535-556 2-23 (56)
307 PRK12577 succinate dehydrogena 20.1 1.9E+02 0.0041 32.7 5.8 42 550-591 22-77 (329)
No 1
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=100.00 E-value=8e-169 Score=1460.11 Aligned_cols=649 Identities=35% Similarity=0.543 Sum_probs=582.6
Q ss_pred CCCChHHHHHhhhhhhcCCChhhHHHHHHHHHHHHHhhcCCCcccCCCccchHHHHHHHHHHcCCCHHHHHHHhhccccc
Q 002985 123 KEDSPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVE 202 (861)
Q Consensus 123 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa~l~lD~~ti~AALLHDvvE 202 (861)
.+++.+++.+.+. .|.++.+.+ +.+|+.||.++|.+|+|+||+|||.||++||.||+++++|.++++||||||++|
T Consensus 5 ~~~~~~~~~~~~~---~~~~~~~~~-l~kA~~~A~q~H~~q~r~SGePYi~Hpl~Va~iLael~~d~~tl~AaLLHD~vE 80 (701)
T COG0317 5 GCVELEELLDSLA---TYLPPVDIE-LKKAWYYARQAHGGQTRKSGEPYISHPLEVAEILAELHMDMETLAAALLHDTIE 80 (701)
T ss_pred ccccHHHHHHHHH---hcCChHHHH-HHHHHHHHHHHhHhhcCcCCCchhhCHHHHHHHHHHccCCHHHHHHHHccchHh
Confidence 5677777777776 566677666 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHhCHHHHHHHHhhcccccccccccccCCcchhhhhHHHHHHHHHhcccCceEEEEeeehhhhcccccC
Q 002985 203 DTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLS 282 (861)
Q Consensus 203 Dt~~~t~e~I~~~FG~~Va~LV~gvTkv~~l~~~~~~~~~~~~~~~qae~lRkmLLAm~~DiRVvLIKLADRLhNMRtL~ 282 (861)
||+ +|.++|++.||++|++||+||||+.+++++. +....|+|++||||+||++|+||++|||||||||||||.
T Consensus 81 Dt~-~t~e~i~~~FG~eVa~LV~GvTkl~~i~~~~------~~~~~qaen~rkmllAm~~DiRvilIKLADRLhNmrtl~ 153 (701)
T COG0317 81 DTP-VTEELIEEIFGKEVAKLVEGVTKLKKIGQLS------SEEELQAENLRKMLLAMVKDIRVVLIKLADRLHNLRTLK 153 (701)
T ss_pred cCC-CCHHHHHHHHCHHHHHHHhhHHHhhhhhccC------ccchhHHHHHHHHHHHhccCccEEEeehhhhhhhcccCc
Confidence 998 9999999999999999999999999886432 234458999999999999999999999999999999999
Q ss_pred CCCcccc------------------------cccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002985 283 HMPPHKQ------------------------SELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQ 338 (861)
Q Consensus 283 ~~~~~kq------------------------~ELEdL~f~~l~p~~y~~i~~~l~~~~~~~~~~i~~~~~~L~~~L~~~~ 338 (861)
+++++|| ||||||||+|++|+.|+.|++.|.+.+.+|++++.+++..|++.|.++|
T Consensus 154 ~~~~ek~~riakETl~IyAPLA~RLGi~~iK~ELEDlsFr~l~P~~Y~~I~~~l~e~r~~re~~i~~~~~~l~~~L~~~g 233 (701)
T COG0317 154 NLDEEKRRRIARETLDIYAPLAHRLGIGQIKWELEDLSFRYLHPDQYKRIAKLLDEKRLEREQYIENVVSELREELKAAG 233 (701)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9878887 9999999999999999999999999999999999999999999999884
Q ss_pred hcccccceeEEEEeecChhHHHHHHHhcCCCcccccceeeEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccccCCCcc
Q 002985 339 FLDLMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRA 418 (861)
Q Consensus 339 ~l~~~~i~~~V~~R~K~~ySI~~Km~rk~~~~~ei~Dl~giRIIv~~~~~~~~~~~~~~~~dCY~vlg~vh~~~~pip~~ 418 (861)
|.++|.||+||+||||+||++|+..|+||+|++||||||++ ..|||++||+||.+|+|+|+|
T Consensus 234 ------i~a~v~gR~KhiYSIyrKM~~k~~~f~~I~Dl~avRiIv~~------------~~dCY~~LGiVH~~~kp~Pgr 295 (701)
T COG0317 234 ------IKAEVSGRPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDT------------IPDCYTALGIVHTLWKPIPGE 295 (701)
T ss_pred ------CeEEEEcCCCcccHHHHHHHHcccChhhhhhheeEEEEECC------------hHHHHHHHHHHHhcCcCCCCc
Confidence 89999999999999999999999999999999999999996 469999999999999999999
Q ss_pred ccccccCCCCCCccceEEEEeccCCccceeEEEEEechhHHHHHHHHHHHhhcccccccccccCCCCCCCCCCCcccccc
Q 002985 419 MKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLN 498 (861)
Q Consensus 419 ~kDyIa~PK~NGYqSLHt~V~~~~~~~~~~vEIQIRT~~Mh~~AE~G~aahw~YK~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (861)
||||||+||+||||||||||++++ |.++||||||++||..||+|+||||+||+++
T Consensus 296 FKDYIA~PK~NgYQSlHTtv~gp~---g~~vEvQIRT~eMh~~AE~GvAAHW~YKe~~---------------------- 350 (701)
T COG0317 296 FDDYIANPKPNGYQSLHTTVIGPE---GKPVEVQIRTKEMHEIAELGVAAHWRYKEGG---------------------- 350 (701)
T ss_pred cccccccCCCCCCceeEEEEECCC---CceEEEEEecHHHHHHHhhhHHHHhHhhcCC----------------------
Confidence 999999999999999999999765 4799999999999999999999999999852
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcCCCchhhhhhhcccccCCceeeecCCCceEecCCCCcHHHHHHhhccccccceEEEE
Q 002985 499 NANIALRISWLNAIREWQEEFVGNMTSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAK 578 (861)
Q Consensus 499 ~~~~~~~~~wl~~l~e~~~~~~~~~~~~ef~~~~k~dl~~~~I~VftP~G~i~~lp~gaT~lDfAy~iht~ig~~~~~ak 578 (861)
..+...+.||++|+|||++. .++.||+|++|.|||+|+||||||+|++++||.||||+||||+|||++|++|+|||
T Consensus 351 -~~~~~~~~Wlr~lle~q~~~---~d~~ef~e~~k~dlf~d~VyvfTPkG~vi~LP~GatplDFAY~vHt~iG~~c~gAk 426 (701)
T COG0317 351 -SAYEEKIAWLRQLLEWQEES---ADSGEFLEQLKSDLFPDRVYVFTPKGKVIDLPKGATPLDFAYAVHTDIGHRCIGAK 426 (701)
T ss_pred -chhhHHHHHHHHHHHHHHhc---CCcHHHHHHHhhcccCceEEEECCCCCEEeCCCCCcchhhhhhhhchhcceeeEEE
Confidence 11345689999999999995 35799999999999999999999999999999999999999999999999999999
Q ss_pred ECCEecCCCccCCCCCeEEEEecCCCCCCcccCCChhHHHhhhccchHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcCC
Q 002985 579 VNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQAALSASEITADTVGDFVADSGE 658 (861)
Q Consensus 579 Vng~~v~l~~~L~~gd~VeIit~~~~~~k~~~~p~~~WL~~v~T~~Ar~kIr~~l~~~~~~~~~~~g~~~l~~~~~~~~~ 658 (861)
|||++|||+++|+|||+|||+|+++. +|+++||+||+|+|||+|||+|||++.+++++..|+++|++.+.++++
T Consensus 427 VnG~ivpl~~~Lk~Gd~VEIit~k~~------~Ps~~Wl~~v~t~kAR~kIr~~~k~~~re~~i~~G~~lLe~~l~~~g~ 500 (701)
T COG0317 427 VNGRIVPLTTKLQTGDQVEIITSKHA------GPSRDWLNFVVTSRARAKIRAWFKKQDRDENVEAGRELLEKELSRLGL 500 (701)
T ss_pred ECCEEeccceecCCCCEEEEEeCCCC------CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999863 599999999999999999999999999999999999999988886544
Q ss_pred C------------CcchhhhccCCCChhhHHHHHHHHhhcCCCccccccccccCCcccCCCcccCC------CCcccccc
Q 002985 659 E------------SEVEDLSDGSKQDKPLWEKILMNVVQMSSPVRNSKAVCSDDNASLWAPKVNGK------HNKRVHYV 720 (861)
Q Consensus 659 ~------------~~~edl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~------~akcc~PV 720 (861)
. .+.||||+++|.|+.+..++++.+. ...... ......... ......|.|. .++||+|+
T Consensus 501 ~~~~~~~l~~~~~~~~edl~a~ig~g~~~~~~v~~~l~-~~~~~~-~~~~~~~~~-~~~~~~v~G~~~l~~~~a~CC~Pi 577 (701)
T COG0317 501 PKELEELLEKLNFKTVEDLYAAVGAGDIRLNHVVNALQ-KLNEPP-LEKLSRKSI-GKGGVLVEGVGNLLTHLAKCCQPV 577 (701)
T ss_pred ChHHHHHHHHhCCCCHHHHHHHhccCCCCHHHHHHHHH-hccccc-hhhhhcccc-CCCceEEeccCCceeEeecCCCCC
Confidence 2 4569999999999999999887776 221111 000000000 0123445553 48999999
Q ss_pred CCC-eeEEeecCCCceEEe--ecCCccchhhhCCCccccccccccccCCCC-CceeEEEEEEEeccccHHHHHHHHHHhC
Q 002985 721 GSK-AEGELSSQENSFAKM--MHANVPMYKEVLPGLESWQASKIATWHNLE-GHSIQWFSVVCIDRRGIMADVTTALATV 796 (861)
Q Consensus 721 pGD-IVGyITsrGRGItrh--dC~N~~~L~e~~~~~er~i~~~~V~W~~~~-~~~~a~I~V~a~DR~GlLadItsvIa~~ 796 (861)
||| |||||| +||||+|| ||+|+.++.. ..||||++ |+|+... ..|.+.|.|++.||+|+|+||+++|++.
T Consensus 578 pGD~IvG~it-~g~Gi~iHr~dC~~~~~~~~--~~per~i~---v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~ 651 (701)
T COG0317 578 PGDPIVGYIT-KGRGISIHRQDCPNFLQLAG--HAPERVID---VSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANE 651 (701)
T ss_pred CCCcEEEEEe-cCCcEEEehhcChhHHHhhh--cCcceEEE---EEecCCCCcceEEEEEEEEccccchHHHHHHHHHhC
Confidence 986 999997 99999998 9999888764 35789998 9998764 4567899999999999999999999999
Q ss_pred CcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeeec
Q 002985 797 GVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWST 845 (861)
Q Consensus 797 ~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~Vs~ 845 (861)
++||.++++.++ +.+.+.|.|+|+ +|..||.++|++|++++||++|.+
T Consensus 652 ~~ni~~v~~~~~-~~~~~~~~~~i~v~n~~~L~~i~~~l~~~~~V~~v~R 700 (701)
T COG0317 652 KINVLGVNTRSD-KDQFATMQFTIEVKNLNHLGRVLARLKQLPDVISVRR 700 (701)
T ss_pred CCceEEeecccc-CCceEEEEEEEEECcHHHHHHHHHHHhcCCCeEEEEe
Confidence 999999999976 568999999999 999999999999999999999986
No 2
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=100.00 E-value=2.8e-161 Score=1418.06 Aligned_cols=659 Identities=25% Similarity=0.420 Sum_probs=575.1
Q ss_pred ChHHHHHhhhhhhcCCChhhHHHHHHHHHHHHHhhcCCCcccCCCccchHHHHHHHHHHcCCCHHHHHHHhhccccccCC
Q 002985 126 SPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTN 205 (861)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~~~l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa~l~lD~~ti~AALLHDvvEDt~ 205 (861)
..+.+.+.+ ..|+ ++|.+.+++||.||.++|.| |+||+|||.||++||.||++|+||.++|+||||||+||||+
T Consensus 16 ~~~~l~~~~---~~~~-~~~~~~i~~A~~~a~~~H~g--r~sGepyi~Hpl~vA~iLa~~~~D~~ti~AaLLHD~vedt~ 89 (743)
T PRK10872 16 DPDKWIASL---GITS-QQSCERLAETWAYCLQQTQG--HPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANV 89 (743)
T ss_pred hHHHHHHHH---Hhhh-HHHHHHHHHHHHHHHHhccC--CCCCChhhhhHHHHHHHHHHcCCCHHHHHHHHhhhhHhcCC
Confidence 344444443 3577 89999999999999999999 99999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHhCHHHHHHHHhhcccccccccccccCCcchhhhhHHHHHHHHHhcccCceEEEEeeehhhhcccccCCCC
Q 002985 206 VVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMP 285 (861)
Q Consensus 206 ~~t~e~I~~~FG~~Va~LV~gvTkv~~l~~~~~~~~~~~~~~~qae~lRkmLLAm~~DiRVvLIKLADRLhNMRtL~~~~ 285 (861)
+|.++|++.||++|+.||+||||++++....... ..+.+..|+|+||||||||++|+||+||||||||||||||.++|
T Consensus 90 -~t~e~i~~~FG~~Va~lVdgvtKl~~i~~~~~~~-~~~~~~~qae~~RKmllam~~DiRVilIKLADRLhnmrTl~~~~ 167 (743)
T PRK10872 90 -VSEDVLRESVGKSIVNLIHGVRDMDAIRQLKATH-NDSVSSEQVDNVRRMLLAMVEDFRCVVIKLAERIAHLREVKDAP 167 (743)
T ss_pred -CCHHHHHHHHCHHHHHHHHHHHHHHHhhhhhccc-ccchhHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999999988874211100 01244569999999999999999999999999999999999999
Q ss_pred cccc------------------------cccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 002985 286 PHKQ------------------------SELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLD 341 (861)
Q Consensus 286 ~~kq------------------------~ELEdL~f~~l~p~~y~~i~~~l~~~~~~~~~~i~~~~~~L~~~L~~~~~l~ 341 (861)
++|| ||||||||+||+|+.|+.|++.|.+.+.+|+.++++++..|++.|.+.
T Consensus 168 ~~kq~~iA~ETl~IyAPlA~RLGi~~iK~ELEDL~f~~l~P~~Y~~i~~~l~~~~~~r~~~i~~~~~~l~~~L~~~---- 243 (743)
T PRK10872 168 EDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPDEYKRIAKLLHERRIDREHYIEEFVGHLRAEMKAE---- 243 (743)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 9998 999999999999999999999999999999999999999999999887
Q ss_pred cccceeEEEEeecChhHHHHHHHhcCCCcccccceeeEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccccCCCccccc
Q 002985 342 LMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKD 421 (861)
Q Consensus 342 ~~~i~~~V~~R~K~~ySI~~Km~rk~~~~~ei~Dl~giRIIv~~~~~~~~~~~~~~~~dCY~vlg~vh~~~~pip~~~kD 421 (861)
+++++|+||+||+||||+||++++.+|++|+|++|+||||++ ..+||++||+||++|+|+|++|||
T Consensus 244 --~i~~~v~gR~K~~ySI~~Km~~k~~~~~~i~Di~a~RIIv~~------------~~dCY~vLg~ih~~~~pip~~fkD 309 (743)
T PRK10872 244 --GVKAEVYGRPKHIYSIWRKMQKKSLAFDELFDVRAVRIVAER------------LQDCYAALGIVHTHYRHLPDEFDD 309 (743)
T ss_pred --CCceEEEeecCCHHHHHHHHHHcCCCHHHhccceeEEEEECC------------HHHHHHHHHHHHhhccCCcchhhh
Confidence 488999999999999999999999999999999999999985 569999999999999999999999
Q ss_pred cccCCCCCCccceEEEEeccCCccceeEEEEEechhHHHHHHHHHHHhhcccccccccccCCCCCCCCCCCcccccchhh
Q 002985 422 YIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNAN 501 (861)
Q Consensus 422 yIa~PK~NGYqSLHt~V~~~~~~~~~~vEIQIRT~~Mh~~AE~G~aahw~YK~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (861)
||++||+||||||||+|++++ |.++||||||.+||.+||+|+||||+||++.. .. + . ...
T Consensus 310 YIa~PK~NGYqSLHttv~~~~---g~~vEVQIRT~~Mh~~AE~GvAAHW~YKeg~~-----------~~-~-~----~~~ 369 (743)
T PRK10872 310 YVANPKPNGYQSIHTVVLGPG---GKTVEIQIRTRQMHEDAELGVAAHWKYKEGAA-----------AG-G-G----RSG 369 (743)
T ss_pred cccCCCCCCcceeEEEEECCC---CcEEEEEEEcHHHHHHHhhhHHHHHhccCCCC-----------cc-c-c----ccc
Confidence 999999999999999998654 48999999999999999999999999998521 00 0 0 112
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCchhhhhhhcccccCCceeeecCCCceEecCCCCcHHHHHHhhccccccceEEEEECC
Q 002985 502 IALRISWLNAIREWQEEFVGNMTSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNG 581 (861)
Q Consensus 502 ~~~~~~wl~~l~e~~~~~~~~~~~~ef~~~~k~dl~~~~I~VftP~G~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng 581 (861)
.+.+++||++|+|||++. .++.||++.+|.|||+++||||||+|+++.||+||||+||||+|||++|++|+||+|||
T Consensus 370 ~~~~~~wLr~lle~~~~~---~d~~ef~e~~k~dl~~d~V~VfTPkG~~~~Lp~gaT~lDfAy~iHt~iG~~~~gAkvng 446 (743)
T PRK10872 370 HEDRIAWLRKLIAWQEEM---ADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGG 446 (743)
T ss_pred hHHHHHHHHHHHHHHhcc---CCHHHHHHHHHHHhcCCeEEEECCCCCeEEcCCCCcHHHHHHHHhHHHHhhceEEEECC
Confidence 455689999999999984 36899999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCccCCCCCeEEEEecCCCCCCcccCCChhHHH----hhhccchHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcC
Q 002985 582 NLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLE----HAKTRSARHKIMKFLREQAALSASEITADTVGDFVADSG 657 (861)
Q Consensus 582 ~~v~l~~~L~~gd~VeIit~~~~~~k~~~~p~~~WL~----~v~T~~Ar~kIr~~l~~~~~~~~~~~g~~~l~~~~~~~~ 657 (861)
++|||+++|++||+|||+|++++ .|++|||+ ||+|+|||+|||+|||+++++++++.|++.|++.+++++
T Consensus 447 ~~v~l~~~L~~GD~VeIits~~~------~Ps~dWL~~~lg~v~T~rAR~kIr~~~k~~~~~~~i~~Gr~lL~k~l~~~~ 520 (743)
T PRK10872 447 RIVPFTYQLQMGDQIEIITQKQP------NPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLG 520 (743)
T ss_pred EECCCCcCCCCCCEEEEEeCCCC------CCChhHhccccCeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999865 48999999 999999999999999999999999999999999988776
Q ss_pred CC--------------CcchhhhccCCCChhhHHHHHHHHhhc-CCCc---cc--c-cccccc----C-CcccCC-Cccc
Q 002985 658 EE--------------SEVEDLSDGSKQDKPLWEKILMNVVQM-SSPV---RN--S-KAVCSD----D-NASLWA-PKVN 710 (861)
Q Consensus 658 ~~--------------~~~edl~~~~~~~~~~~~~~~~~~~~~-~~~~---~~--~-~~~~~~----~-~~~~~~-~~i~ 710 (861)
++ .+.+|||.++|.|+.++.+++..+... .... .. . ..+.+. . ...... +.|.
T Consensus 521 ~~~~~~~~~l~~~~~~~~~ddl~~~iG~g~i~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~ 600 (743)
T PRK10872 521 ISLKEAEKHLLPRYNFNSLDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYTPQNRSKDNGRVVVE 600 (743)
T ss_pred CChHHHHHHHHHHhCCCCHHHHHHHhcCCCCCHHHHHHHHHHHhcccccccchhhhhhhhcccccccccccCCCCeEEEe
Confidence 42 356899999999999999998876431 1000 00 0 000000 0 000111 4455
Q ss_pred CCC------CccccccCCC-eeEEeecCCCceEEe--ecCCccchhhhCCCccccccccccccCCCC-CceeEEEEEEEe
Q 002985 711 GKH------NKRVHYVGSK-AEGELSSQENSFAKM--MHANVPMYKEVLPGLESWQASKIATWHNLE-GHSIQWFSVVCI 780 (861)
Q Consensus 711 g~~------akcc~PVpGD-IVGyITsrGRGItrh--dC~N~~~L~e~~~~~er~i~~~~V~W~~~~-~~~~a~I~V~a~ 780 (861)
|.. ++||+|+||| |||||| +|+||+|| +|||+.++.+ .+++||++ |+|+... ..+.+.|.|++.
T Consensus 601 G~~~~lv~~A~CC~PiPGD~IvG~iT-rGrGI~VHr~dC~nl~~l~~--~~~eR~I~---V~W~~~~~~~~~v~I~I~~~ 674 (743)
T PRK10872 601 GVGNLMHHIARCCQPIPGDEIVGFIT-QGRGISIHRADCEQLAELRS--HAPERIVD---AVWGESYSSGYSLVVRVTAN 674 (743)
T ss_pred cCCCceEEECCCCCCCCCCcEEEEEE-CCCCEEEEcccChhhHhhhh--cCCceEEE---eEecCCCCceeEEEEEEEEc
Confidence 543 8999999986 999997 99999998 8888876643 35778988 9997542 346789999999
Q ss_pred ccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeeec
Q 002985 781 DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWST 845 (861)
Q Consensus 781 DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~Vs~ 845 (861)
||+|+|+||+++|++.++||.++++.++..++.+.+.|+|+ .|.+||.++|++|++++||++|.|
T Consensus 675 Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~~L~~l~~~L~~i~~V~~v~R 740 (743)
T PRK10872 675 DRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARR 740 (743)
T ss_pred CCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHHHHHHHHHHHhcCCCcCeEEe
Confidence 99999999999999999999999998654357899999999 999999999999999999999987
No 3
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=100.00 E-value=1.1e-158 Score=1400.78 Aligned_cols=636 Identities=30% Similarity=0.493 Sum_probs=566.7
Q ss_pred hcCCChhhHHHHHHHHHHHHHhhcCCCcccCCCccchHHHHHHHHHHcCCCHHHHHHHhhccccccCCCCCHHHHHHHhC
Q 002985 138 ISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFG 217 (861)
Q Consensus 138 ~~~~~~~~~~~l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa~l~lD~~ti~AALLHDvvEDt~~~t~e~I~~~FG 217 (861)
..|+++++.+++.+|+.||.++|.||+|++|+||+.||++||.||+++++|.++|+||||||++|||+ +|.++|++.||
T Consensus 12 ~~~~~~~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~ti~AaLLHDvvEDt~-~t~e~i~~~FG 90 (702)
T PRK11092 12 QTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMRLDYETLMAALLHDVIEDTP-ATYQDMEQLFG 90 (702)
T ss_pred HhhCCHHHHHHHHHHHHHHHHhccCCcCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHhcccchhhhCC-CCHHHHHHHHC
Confidence 37999999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred HHHHHHHHhhcccccccccccccCCcchhhhhHHHHHHHHHhcccCceEEEEeeehhhhcccccCCCCcccc--------
Q 002985 218 ATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQ-------- 289 (861)
Q Consensus 218 ~~Va~LV~gvTkv~~l~~~~~~~~~~~~~~~qae~lRkmLLAm~~DiRVvLIKLADRLhNMRtL~~~~~~kq-------- 289 (861)
++|+.||+||||++++.. . .....|+|+|||||+||++|+||++|||||||||||+|..+|+++|
T Consensus 91 ~~Va~lV~gvTk~~~l~~---~----~~~~~q~e~~rkmllam~~DiRVvlIKLADRlhNmrtL~~~~~ek~~~iA~ETl 163 (702)
T PRK11092 91 KSVAELVEGVSKLDKLKF---R----DKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETL 163 (702)
T ss_pred HHHHHHHHHHHhhccccc---c----chhhHHHHHHHHHHHHhcCCCceEEEEHHHHHhhHHHHHhcCccHHHHHHHHHH
Confidence 999999999999877632 1 1334689999999999999999999999999999999999999987
Q ss_pred ----------------cccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccceeEEEEee
Q 002985 290 ----------------SELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTVKTEIRSVC 353 (861)
Q Consensus 290 ----------------~ELEdL~f~~l~p~~y~~i~~~l~~~~~~~~~~i~~~~~~L~~~L~~~~~l~~~~i~~~V~~R~ 353 (861)
||||||||+||+|+.|+.|++.|.+.+.+|+++++++...|++.|++.+ |+++|+||.
T Consensus 164 ~iyaPlA~rlGi~~ik~eLedL~f~~l~P~~y~~i~~~~~~~~~~r~~~i~~~~~~l~~~l~~~~------i~~~i~~R~ 237 (702)
T PRK11092 164 EIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILSEIEGRLQEAG------IPCRVSGRE 237 (702)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------CcEEEEecc
Confidence 9999999999999999999999999999999999999999999998884 899999999
Q ss_pred cChhHHHHHHHhcCCCcccccceeeEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccccCCCccccccccCCCCCCccc
Q 002985 354 KEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQS 433 (861)
Q Consensus 354 K~~ySI~~Km~rk~~~~~ei~Dl~giRIIv~~~~~~~~~~~~~~~~dCY~vlg~vh~~~~pip~~~kDyIa~PK~NGYqS 433 (861)
||+||||+||++|+.+|++|+|++|+||||++ ..|||++||+||++|+|+|++|||||++||+|||||
T Consensus 238 K~~ySI~~Km~~k~~~~~~i~Di~a~Riiv~~------------~~dCY~~lg~ih~~~~pip~~~kDyIa~PK~NgYqS 305 (702)
T PRK11092 238 KHLYSIYCKMVLKEQRFHSIMDIYAFRVIVDD------------SDTCYRVLGQMHSLYKPRPGRVKDYIAIPKANGYQS 305 (702)
T ss_pred CCHHHHHHHHHHcCCChhHhccceeEEEEECC------------HHHHHHHHHHHHhcCCCCcCccccccCCCCCCCCce
Confidence 99999999999999999999999999999885 579999999999999999999999999999999999
Q ss_pred eEEEEeccCCccceeEEEEEechhHHHHHHHHHHHhhcccccccccccCCCCCCCCCCCcccccchhhHHHHHHHHHHHH
Q 002985 434 LHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIR 513 (861)
Q Consensus 434 LHt~V~~~~~~~~~~vEIQIRT~~Mh~~AE~G~aahw~YK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~l~ 513 (861)
|||+|+++. |.++||||||.+||.+||+|+||||+||++.+ . + .....+.+.||++|+
T Consensus 306 LHt~v~g~~---g~~vEvQIRT~~Mh~~Ae~GvaAhW~yK~~~~-----------~--~------~~~~~~~~~wlr~ll 363 (702)
T PRK11092 306 LHTSMIGPH---GVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGE-----------T--G------TTAQIRAQRWMQSLL 363 (702)
T ss_pred EEEEEECCC---CcEEEEEEEcHHHHHHHhhhhHhhhhhccCCC-----------c--c------chhHHHHHHHHHHHH
Confidence 999998654 47999999999999999999999999998421 0 0 111233489999999
Q ss_pred HHHHhhhcCCCchhhhhhhcccccCCceeeecCCCceEecCCCCcHHHHHHhhccccccceEEEEECCEecCCCccCCCC
Q 002985 514 EWQEEFVGNMTSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANA 593 (861)
Q Consensus 514 e~~~~~~~~~~~~ef~~~~k~dl~~~~I~VftP~G~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~l~~~L~~g 593 (861)
+||++. .++.||++.+|.|||+|+||||||+|+++.||+||||+||||+|||++|++|+||||||++|||+|+|++|
T Consensus 364 ~~~~~~---~~~~ef~~~~~~dl~~d~v~VfTP~G~v~~LP~GaT~lDFAY~iHt~iG~~c~gAkVNg~~vpL~~~L~~G 440 (702)
T PRK11092 364 ELQQSA---GSSFEFIESVKSDLFPDEIYVFTPEGRIVELPAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLTSG 440 (702)
T ss_pred HHHhhc---CChHHHHHHHHhhhccceEEEECCCCCEEeCCCCCchhhhhHhhCchhhceeEEEEECCEECCCCccCCCC
Confidence 999974 36889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEecCCCCCCcccCCChhHHHhhhccchHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcC-C--------------
Q 002985 594 EVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQAALSASEITADTVGDFVADSG-E-------------- 658 (861)
Q Consensus 594 d~VeIit~~~~~~k~~~~p~~~WL~~v~T~~Ar~kIr~~l~~~~~~~~~~~g~~~l~~~~~~~~-~-------------- 658 (861)
|+|||+|++++ +|++|||+||+|+|||+|||+|||++++++++++|+++|++.+++++ +
T Consensus 441 d~VeIiT~~~~------~P~~dWL~~v~T~rAr~kIr~~~r~~~~~~~i~~Gr~lL~~~l~~~~~~~~~~~~~l~~~~~~ 514 (702)
T PRK11092 441 QTVEIITAPGA------RPNAAWLNFVVSSKARAKIRQLLKNLKRDDSVSLGRRLLNHALGGSRKLDEIPQENIQRELDR 514 (702)
T ss_pred CEEEEEeCCCC------CCChHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCChhhcCHHHHHHHHHH
Confidence 99999999864 38999999999999999999999999999999999999998887653 0
Q ss_pred --CCcchhhhccCCCChhhHHHHHHHHhhcCCCccccccccccCCcccCCCcccCC------CCccccccCCC-eeEEee
Q 002985 659 --ESEVEDLSDGSKQDKPLWEKILMNVVQMSSPVRNSKAVCSDDNASLWAPKVNGK------HNKRVHYVGSK-AEGELS 729 (861)
Q Consensus 659 --~~~~edl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~------~akcc~PVpGD-IVGyIT 729 (861)
..+.+|||.++|.|++++.+++..+.....+ ...+.. ....+.|.|. .++||+|+||| ||||||
T Consensus 515 ~~~~~~d~l~~~iG~g~i~~~~v~~~~~~~~~~-----~~~~~~--~~~~i~I~G~~~~~v~~A~CC~PiPGD~IvG~it 587 (702)
T PRK11092 515 MKLATLDDLLAEIGLGNAMSVVVAKNLLGDDAE-----LPTATS--SHGKLPIKGADGVLITFAKCCRPIPGDPIIAHVS 587 (702)
T ss_pred cCCCCHHHHHHHHcCCCCCHHHHHHHhhhhccc-----cccccc--CCCceEEeccCCceEEeCCCCCCCCCCcEEEEEE
Confidence 0356889999999999988888776421100 000000 1112344443 48999999986 999997
Q ss_pred cCCCceEEe--ecCCccchhhhCCCccccccccccccCCCC-CceeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEe
Q 002985 730 SQENSFAKM--MHANVPMYKEVLPGLESWQASKIATWHNLE-GHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAE 806 (861)
Q Consensus 730 srGRGItrh--dC~N~~~L~e~~~~~er~i~~~~V~W~~~~-~~~~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~ 806 (861)
+|+||+|| +|+|+.++. .+++||++ |+|+... ..+.+.|.|++.||+|+|++|+++|++.++||.++++.
T Consensus 588 -~grGI~VHr~dC~nl~~l~---~~~er~i~---v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~ 660 (702)
T PRK11092 588 -PGKGLVIHHESCRNIRGYQ---KEPEKFMA---VEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTE 660 (702)
T ss_pred -CCCCEEEECcCCchhhhhh---cCcceeEE---eEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEE
Confidence 99999998 888887762 35789988 9997543 34678999999999999999999999999999999987
Q ss_pred EecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeeec
Q 002985 807 IDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWST 845 (861)
Q Consensus 807 ~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~Vs~ 845 (861)
++ +++.+.+.|+|+ .|.+||.++|++|++++||++|.|
T Consensus 661 ~~-~~~~~~~~~~ieV~~~~~L~~i~~~Lr~i~~V~~V~R 699 (702)
T PRK11092 661 EK-DGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVTR 699 (702)
T ss_pred Ec-CCCEEEEEEEEEECCHHHHHHHHHHHhCCCCcceEEE
Confidence 55 357899999999 999999999999999999999987
No 4
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=100.00 E-value=2.1e-149 Score=1325.66 Aligned_cols=626 Identities=36% Similarity=0.562 Sum_probs=553.9
Q ss_pred HHHHHHHhhcCCCcccCCCccchHHHHHHHHHHcCCCHHHHHHHhhccccccCCCCCHHHHHHHhCHHHHHHHHhhcccc
Q 002985 152 ALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVS 231 (861)
Q Consensus 152 A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa~l~lD~~ti~AALLHDvvEDt~~~t~e~I~~~FG~~Va~LV~gvTkv~ 231 (861)
|+.||.++|.||+|++|+||+.||++||.||+++++|.++++||||||++|||+ +|.++|++.||++|+.||+||||++
T Consensus 1 A~~~A~~aH~gQ~rksg~PYi~Hpl~VA~iL~~~~~D~~~i~AaLLHDvvEDt~-~t~e~i~~~FG~~Va~lV~~vTk~~ 79 (683)
T TIGR00691 1 ALEIAKDLHEGQKRKSGEPYIIHPLAVALILAELGMDEETVCAALLHDVIEDTP-VTEEEIEEEFGEEVAELVDGVTKIT 79 (683)
T ss_pred CHHHHHHhcccCcCCCCCcHHHHHHHHHHHHHHhCCCHHHHHHHhccchHhcCC-CCHHHHHHHHCHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999999999999999999999999998 8999999999999999999999987
Q ss_pred cccccccccCCcchhhhhHHHHHHHHHhcccCceEEEEeeehhhhcccccCCCCcccc----------------------
Q 002985 232 KLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQ---------------------- 289 (861)
Q Consensus 232 ~l~~~~~~~~~~~~~~~qae~lRkmLLAm~~DiRVvLIKLADRLhNMRtL~~~~~~kq---------------------- 289 (861)
.+.. . .....|+|+|||||++|+.|+||++|||||||||||+|..+|+++|
T Consensus 80 ~~~~---~----~~~~~q~e~~rkmlla~~~d~rvvlVKLADrlhNmrtl~~~~~~k~~~iA~Et~~iyaPlA~rLG~~~ 152 (683)
T TIGR00691 80 KLKK---K----SRQELQAENFRKMILAMAQDIRVIVIKLADRLHNMRTLDFLPPEKQKRIAKETLEIYAPLAHRLGMSS 152 (683)
T ss_pred cccc---c----hhhHHHHHHHHHHHHhhcCCcceEeeeHHHHHhHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhChHH
Confidence 7642 1 2344689999999999999999999999999999999999999987
Q ss_pred --cccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccceeEEEEeecChhHHHHHHHhcC
Q 002985 290 --SELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTVKTEIRSVCKEPYSIYKAVLKSR 367 (861)
Q Consensus 290 --~ELEdL~f~~l~p~~y~~i~~~l~~~~~~~~~~i~~~~~~L~~~L~~~~~l~~~~i~~~V~~R~K~~ySI~~Km~rk~ 367 (861)
||||||||+||+|+.|+.|++.|.+.+.+|+++++.+...|++.|.+.+ ++++|+||+||+||||+||++++
T Consensus 153 ik~eLedl~f~~l~p~~y~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~------i~~~i~~R~K~~~Si~~Km~~k~ 226 (683)
T TIGR00691 153 IKTELEDLSFKYLYPKEYENIKSLVNEQKVNRENKLEKFKSELEKRLEDSG------IEAELEGRSKHLYSIYQKMTRKG 226 (683)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CceEEEeeeCCHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999998874 78999999999999999999999
Q ss_pred CCcccccceeeEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccccCCCccccccccCCCCCCccceEEEEeccCCccce
Q 002985 368 GSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMF 447 (861)
Q Consensus 368 ~~~~ei~Dl~giRIIv~~~~~~~~~~~~~~~~dCY~vlg~vh~~~~pip~~~kDyIa~PK~NGYqSLHt~V~~~~~~~~~ 447 (861)
.+|++|+|++|+||||++ ..|||++||+||++|+|+|++|||||++||+||||||||+|.++. |.
T Consensus 227 ~~~~~i~Di~~~RIi~~~------------~~dcy~vlg~ih~~~~p~~~~~kDyIa~PK~nGYqSlHt~v~~~~---g~ 291 (683)
T TIGR00691 227 QNFDEIHDLLAIRIIVKS------------ELDCYRVLGIIHLLFKPIPGRFKDYIASPKENGYQSLHTTVRGPK---GL 291 (683)
T ss_pred CCHHHcccceeEEEEECC------------HHHHHHHHHHHHhcCCCCcccccccccCCCCCCcceeEEEEEcCC---CC
Confidence 999999999999999885 579999999999999999999999999999999999999998643 48
Q ss_pred eEEEEEechhHHHHHHHHHHHhhcccccccccccCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHhhhcCCCchh
Q 002985 448 RLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIREWQEEFVGNMTSRE 527 (861)
Q Consensus 448 ~vEIQIRT~~Mh~~AE~G~aahw~YK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~l~e~~~~~~~~~~~~e 527 (861)
++||||||.+||.|||+|+||||+||++.. + ....+.++.||++|++||++. .++.+
T Consensus 292 ~~EvQIRT~~mh~~Ae~Gvaahw~yk~~~~--------------~------~~~~~~~~~wl~~~~~~~~~~---~~~~~ 348 (683)
T TIGR00691 292 PVEIQIRTEDMDRVAEYGIAAHWIYKEGNP--------------Q------KEALIDDMRWLNYLVEWQQES---ANFFE 348 (683)
T ss_pred EEEEEEEehHHHHHHHHHHHHHHhhcCCCC--------------c------chhHHHHHHHHHHHHHHHhhc---ccchh
Confidence 999999999999999999999999998420 0 011345689999999999984 36889
Q ss_pred hhhhhcccccCCceeeecCCCceEecCCCCcHHHHHHhhccccccceEEEEECCEecCCCccCCCCCeEEEEecCCCCCC
Q 002985 528 FVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSK 607 (861)
Q Consensus 528 f~~~~k~dl~~~~I~VftP~G~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~l~~~L~~gd~VeIit~~~~~~k 607 (861)
|++.+|.|||+++||||||+|+++.||+||||+||||+|||++|++|+||+|||+.|||+++|++||+|||+|++++
T Consensus 349 ~~~~~k~~l~~~~i~vfTPkG~~~~lp~gst~~DfAy~ih~~~g~~~~~a~vng~~v~l~~~l~~gd~vei~t~~~~--- 425 (683)
T TIGR00691 349 FIENLKSDLFNEEIYVFTPKGDVVELPSGSTPVDFAYAVHTDVGNKCTGAKVNGKIVPLDKELENGDVVEIITGKNS--- 425 (683)
T ss_pred HHHHhhHHhccCceEEECCCCeEEEcCCCCCHHHHHHHHhHHhHhceeEEEECCEECCCCccCCCCCEEEEEeCCCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred cccCCChhHHHhhhccchHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcCCC-----------------CcchhhhccCC
Q 002985 608 SAFQRHKQWLEHAKTRSARHKIMKFLREQAALSASEITADTVGDFVADSGEE-----------------SEVEDLSDGSK 670 (861)
Q Consensus 608 ~~~~p~~~WL~~v~T~~Ar~kIr~~l~~~~~~~~~~~g~~~l~~~~~~~~~~-----------------~~~edl~~~~~ 670 (861)
+|+++||+||+|+|||++||+|||+++++++++.|++.|++.++++++. .+.+|||.++|
T Consensus 426 ---~P~~dWL~~v~T~rAR~kIr~~~k~~~r~~~i~~G~~lLek~l~~~~~~~~~~~~~~~~~l~~~~~~~~ddl~~~iG 502 (683)
T TIGR00691 426 ---NPSVIWLNFVVTSKARNKIRQWLKKLRREVAISEGKNILEKELGRSGLKLEDLTQYIQKRLNRLRFKKLSELLAEIG 502 (683)
T ss_pred ---CCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCCCHHHHHHHHh
Confidence 4899999999999999999999999999999999999998888876642 35688999999
Q ss_pred CChhhHHHHHHHHhhcCCC-c-cc-ccccc-ccC-CcccCCCcccCC------CCccccccCCC-eeEEeecCCCceEEe
Q 002985 671 QDKPLWEKILMNVVQMSSP-V-RN-SKAVC-SDD-NASLWAPKVNGK------HNKRVHYVGSK-AEGELSSQENSFAKM 738 (861)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~-~-~~-~~~~~-~~~-~~~~~~~~i~g~------~akcc~PVpGD-IVGyITsrGRGItrh 738 (861)
.|..++.+++..+...... . .. ...+. +.. ......+.+.|. .++||+|+||| |||||| +|+||+||
T Consensus 503 ~g~i~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~~v~~A~CC~PvPGD~IiG~it-~g~Gi~VH 581 (683)
T TIGR00691 503 KGNFSSKEVAKLLAQNNSKWQALTKPLKFAFSPKVFENSSFESIEGIEITKIVIAKCCSPIPGDPIIGIVT-KGKGLSVH 581 (683)
T ss_pred CCCCCHHHHHHHHHHhhhcccccchhhhcccccccccCCCceeeecCCCceeEECCCCCCCCCCcEEEEEE-CCCCEEEE
Confidence 9999999998877431100 0 00 00000 000 001112345553 38999999986 999997 99999998
Q ss_pred --ecCCccchhhhCCCccccccccccccCCC-CCceeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEE
Q 002985 739 --MHANVPMYKEVLPGLESWQASKIATWHNL-EGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAV 815 (861)
Q Consensus 739 --dC~N~~~L~e~~~~~er~i~~~~V~W~~~-~~~~~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~ 815 (861)
+|+|+.++ .++||++ |+|+.. ...+.+.|.|++.||+|+|++|+++|++.++||.++++.++ +++.+.
T Consensus 582 r~dC~nl~~~-----~~er~I~---v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~-~~~~~~ 652 (683)
T TIGR00691 582 HKDCKNLKNY-----KQEKIIE---VEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTY-GKREAI 652 (683)
T ss_pred ccCchhhhhc-----CcccEEE---EEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEc-CCCEEE
Confidence 77777654 2478888 999754 23467899999999999999999999999999999999765 357899
Q ss_pred EEEEEE-cCHHHHHHHHHHhccccCeeeeec
Q 002985 816 MLFHVE-GNLESLVNACSSVDLILGVLGWST 845 (861)
Q Consensus 816 m~ftVE-~d~~~L~~l~~~L~~I~gV~~Vs~ 845 (861)
|.|+|+ .|.+||.++|.+|++++||++|.+
T Consensus 653 ~~~~ieV~~~~~L~~ii~~L~~i~~V~~v~R 683 (683)
T TIGR00691 653 LNITVEIKNYKHLLKIMLKIKTKNDVIVVKR 683 (683)
T ss_pred EEEEEEECCHHHHHHHHHHHhCCCCceEEeC
Confidence 999999 999999999999999999999975
No 5
>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-72 Score=602.42 Aligned_cols=405 Identities=32% Similarity=0.469 Sum_probs=337.1
Q ss_pred CChhhHHHHHHHHHHHHHhhcCCCcccC-CCccchHHHHHHHHHHcCCCHHHHHHHhhccccccCCCCCHHHHHHHhCHH
Q 002985 141 LSPNELELVRRALMLAFEAHDGQKRRSG-EPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGAT 219 (861)
Q Consensus 141 ~~~~~~~~l~~A~~~A~~aH~gQ~RksG-ePYi~Hpl~VA~ILa~l~lD~~ti~AALLHDvvEDt~~~t~e~I~~~FG~~ 219 (861)
+.-.+-+++-+|+.+|+.+|.+|+|+++ +||+.|++.+|.||+.+++|.++++||+||||||||. +|+++|+++||..
T Consensus 69 ~~t~~s~lv~KAl~~Aa~~HR~Q~Rad~~rPY~nH~i~ta~iLAd~~~ds~Vv~AaiLHDVVDDt~-~S~eeI~~~FG~g 147 (543)
T KOG1157|consen 69 HKTFSSELVIKALYEAAKAHRGQMRADDDRPYLNHCIETAMILADIGADSTVVVAAILHDVVDDTF-MSYEEILRHFGTG 147 (543)
T ss_pred hhcCcHHHHHHHHHHHHHHHhcccccCCCCchhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhhcc-CCHHHHHHHhCcc
Confidence 3344567899999999999999999975 4999999999999999999999999999999999998 8999999999999
Q ss_pred HHHHHHhhcccccccccccccCCcchhhhhHHHHHHHHHhcccCceEEEEeeehhhhcccccCCCCcccc----------
Q 002985 220 VRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQ---------- 289 (861)
Q Consensus 220 Va~LV~gvTkv~~l~~~~~~~~~~~~~~~qae~lRkmLLAm~~DiRVvLIKLADRLhNMRtL~~~~~~kq---------- 289 (861)
|++||+++|+++.+.+.... ...|.+.+| |+.+|.. .|++||||||+|||||+|..+||-+|
T Consensus 148 Va~LV~EvtddKnL~K~eRk------~l~qiet~~-~fyak~s-~RAvLIkLADKLdNMRdL~~lpPvgwq~~r~e~lfI 219 (543)
T KOG1157|consen 148 VADLVEEVTDDKNLSKLERK------NLTQIETVE-MFYAKAS-ARAVLIKLADKLDNMRDLYALPPVGWQRFRKETLFI 219 (543)
T ss_pred HHHHHHHHhcccchhHHHHH------HHHHHHHHH-HHHHHHH-HHHHHHHHHHHHhhhhhhhccCcchhHHHHHHHHHH
Confidence 99999999999888764332 224788888 7778775 99999999999999999999999875
Q ss_pred --------------cccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccceeEEEEeecC
Q 002985 290 --------------SELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTVKTEIRSVCKE 355 (861)
Q Consensus 290 --------------~ELEdL~f~~l~p~~y~~i~~~l~~~~~~~~~~i~~~~~~L~~~L~~~~~l~~~~i~~~V~~R~K~ 355 (861)
.+||+|+|+|++|..|.++..+|+.... +..|+.++..|++.|..+++ ...-|+||.|+
T Consensus 220 wapla~~~g~gtn~~lle~Ldf~~l~p~~~~~m~s~l~~~~~--~~mi~~~~~~l~~~l~~a~i-----~~~~i~gr~ks 292 (543)
T KOG1157|consen 220 WAPLANRLGIGTNKVLLENLDFKHLFPCQHIEMSSMLEDSFD--EAMITSAIEKLEQALKKAGI-----SYHVIKGRHKS 292 (543)
T ss_pred hhHHHHHhcccchHHHHhhhhHHHhCchhHHHHHHHHhcccc--hHHHHHHHHHHHHHHHhccc-----eeEEEecchhh
Confidence 7899999999999999999999998755 78899999999999988763 24678999999
Q ss_pred hhHHHHHHHhcCCCcccccceeeEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccccCCCccccccccCCCCCCccceE
Q 002985 356 PYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLH 435 (861)
Q Consensus 356 ~ySI~~Km~rk~~~~~ei~Dl~giRIIv~~~~~~~~~~~~~~~~dCY~vlg~vh~~~~pip~~~kDyIa~PK~NGYqSLH 435 (861)
+||||+||.|++...+||+|+.|+|+||++. .+||+++|+||++|+.+|++.||||+.||.|||||||
T Consensus 293 ~ysi~~kmlk~~~~~dei~di~glr~i~~~~------------~~cyk~~~vv~slw~evp~k~kdyia~pk~ngy~slh 360 (543)
T KOG1157|consen 293 LYSIYKKMLKKKLTPDEIHDIHGLRLIVDNE------------SDCYKALGVVHSLWSEVPGKLKDYIAHPKFNGYQSLH 360 (543)
T ss_pred HHHHHHHHHhcCCCHHHhhhhcceEEEEcCc------------hHHHHHHHHHHHHHHhCcchhhhhhcCccccccceee
Confidence 9999999999999999999999999999974 4999999999999999999999999999999999999
Q ss_pred EEEeccCCccceeEEEEEechhHHHHHHHHHHHhhcccccccccccCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHH
Q 002985 436 TTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIREW 515 (861)
Q Consensus 436 t~V~~~~~~~~~~vEIQIRT~~Mh~~AE~G~aahw~YK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~l~e~ 515 (861)
|+|...+ ..|+||||||.+||.-||+|.|+||+||++. .+....+++.|.+-...|
T Consensus 361 ~~v~~d~---~~plevqirt~em~~~a~~g~aah~~yk~g~---------------------~~~~~~q~~~~~~~~~~~ 416 (543)
T KOG1157|consen 361 TVVMVDG---TRPLEVQIRTMEMHLQAEFGFAAHWRYKEGK---------------------TSSFVLQMVEWARWVVTW 416 (543)
T ss_pred eEEecCC---cceeEEEEeeeccccccccchhhHhhhhcCC---------------------CCHHHHHHHHHHHHHHHH
Confidence 9997644 3799999999999999999999999999852 123355779999999999
Q ss_pred HHhhhc-CCCchhhhhhhcc-cccCCceeeecCCC----------------ceEecCCCCcHHHHHHhhcccccc-----
Q 002985 516 QEEFVG-NMTSREFVDTITR-DLLGSRVFVFTPRG----------------EIKNLPKGATVVDYAYMIHTEIGN----- 572 (861)
Q Consensus 516 ~~~~~~-~~~~~ef~~~~k~-dl~~~~I~VftP~G----------------~i~~lp~gaT~lDfAy~iht~ig~----- 572 (861)
.-+... +.++. -..+.|. .-..|.+|.+.|+| .+-++|+.+|++|.--.-.+.-..
T Consensus 417 ~~~~~~kd~ss~-~~~~~k~~s~~~d~~f~~~~~~~~~~~~~~~~ie~e~m~~~~~~e~~~~~d~~s~~~~~s~~~~~~~ 495 (543)
T KOG1157|consen 417 HAEIMSKDISSI-KSSSCKFPSHQEDCPFSYKPKNGQGGPVYVIVIENEKMGVQEFPEMSTVSDLLSRAGPGSSRWSMYQ 495 (543)
T ss_pred HHHHHhcccccc-cccccCCCCccccCceeecCCCCCCCceEEEEeeccccCCCCCchhhhHHHhhccCCCCccchhhhc
Confidence 876531 11111 1112332 23367899999975 245689999999985332221100
Q ss_pred ---ceEEEEECCEecCCCccCCCCCeEEEEec
Q 002985 573 ---KMVAAKVNGNLVSPTHVLANAEVVEIITY 601 (861)
Q Consensus 573 ---~~~~akVng~~v~l~~~L~~gd~VeIit~ 601 (861)
....-+.|. ++.++++-||+||....
T Consensus 496 ~~~e~lr~~~~~---d~~~k~~m~d~~~~~p~ 524 (543)
T KOG1157|consen 496 IPAEELRPRLNQ---DLKYKLKMGDVVELTPH 524 (543)
T ss_pred CcHHHhhhhhcc---chhHHhhhcchhhcCCC
Confidence 112233443 88899999999998653
No 6
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=99.95 E-value=1.1e-29 Score=251.34 Aligned_cols=132 Identities=56% Similarity=0.845 Sum_probs=98.3
Q ss_pred HHHHHHHhhcCCCcccCCCccchHHHHHHHHHHcCCCHHHHHHHhhccccccCCCCCHHHHHHHhCHHHHHHHHhhcccc
Q 002985 152 ALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVS 231 (861)
Q Consensus 152 A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa~l~lD~~ti~AALLHDvvEDt~~~t~e~I~~~FG~~Va~LV~gvTkv~ 231 (861)
|+.||.++|.+|++++|+||+.||++||.+|.++|+|.++++||||||++|||. .+ ++|++.||++|+++|.++|+++
T Consensus 1 A~~~A~~~h~~~~~~~g~py~~H~~~va~~l~~~~~d~~~i~aalLHD~ied~~-~~-~~i~~~fg~~V~~lV~~lt~~~ 78 (153)
T PF13328_consen 1 ALAFAAEAHAGQRRKSGEPYISHPLEVAEILAELGLDEETIAAALLHDVIEDTE-TT-EDIEERFGEDVADLVDALTKIK 78 (153)
T ss_dssp HHHHHHHHTTT-B-ST--BTTHHHHHHHHHHHTS---HHHHHHHHHTTHHHHSS----HHHHHHHHHHHHHHHHHT---T
T ss_pred CHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHcCCCHHHHhhheeecHHHhcC-CH-HHHHHccChHHHHHHHHHHhcc
Confidence 789999999999999999999999999999999999999999999999999995 56 9999999999999999999988
Q ss_pred cccccccccCCcchhhhhHHHHHHHHHhcccCceEEEEeeehhhhcccccCCCCcccc
Q 002985 232 KLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQ 289 (861)
Q Consensus 232 ~l~~~~~~~~~~~~~~~qae~lRkmLLAm~~DiRVvLIKLADRLhNMRtL~~~~~~kq 289 (861)
.+++.. .......+.+++|+||++|++|+||++||||||+||||++...++++|
T Consensus 79 ~~~~~~----~~~~~~~~~~~~r~ml~~~~~d~~~~lIKlaDrl~nl~~~~~~~~~~~ 132 (153)
T PF13328_consen 79 KLSKKP----WEERSEEYAERLRRMLLAMSEDVRAVLIKLADRLHNLRTIKYLPPEKQ 132 (153)
T ss_dssp TS-HH-------HHHHHHHHHGGG-----S-H-HHHHHHHHHHHHHHHHHHH---TT-
T ss_pred cccccc----chhhHHHHHHHhhhhccccCCchHHHHHHHHHHHHhhccHHHCCHHHh
Confidence 875431 112456788999999999999999999999999999999998888876
No 7
>PF04607 RelA_SpoT: Region found in RelA / SpoT proteins; InterPro: IPR007685 The functions of Escherichia coli RelA and SpoT differ somewhat. RelA (2.7.6.5 from EC) produces pppGpp (or ppGpp) from ATP and GTP (or GDP). SpoT (3.1.7.2 from EC) degrades ppGpp, but may also act as a secondary ppGpp synthetase. The two proteins are strongly similar. In many species, a single homologue to SpoT and RelA appears reponsible for both ppGpp synthesis and ppGpp degradation. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species. ; GO: 0015969 guanosine tetraphosphate metabolic process; PDB: 2BE3_B 1VJ7_B 3L9D_B.
Probab=99.93 E-value=3e-26 Score=215.44 Aligned_cols=110 Identities=32% Similarity=0.460 Sum_probs=91.3
Q ss_pred EeecChhHHHHHHHhcCC---CcccccceeeEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccccCCCccccccccCCC
Q 002985 351 SVCKEPYSIYKAVLKSRG---SINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPK 427 (861)
Q Consensus 351 ~R~K~~ySI~~Km~rk~~---~~~ei~Dl~giRIIv~~~~~~~~~~~~~~~~dCY~vlg~vh~~~~pip~~~kDyIa~PK 427 (861)
+|+|+++|+++|+.|++. ++.+|+|++|+|||+... +|||.++++|++.|.+.+.+++|||+.||
T Consensus 1 ~RvK~~~Sl~~Kl~r~~~~~~~~~~i~Dl~G~RIi~~~~------------~d~~~v~~~l~~~~~~~~~~~~d~i~~~~ 68 (115)
T PF04607_consen 1 SRVKSPESLIEKLRRKGGPDNPLKDIQDLVGIRIIVYFP------------DDCYKVLGLLHKLFDVKIDRSKDYIANPK 68 (115)
T ss_dssp EEE--HHHHHHCHHHHTGCCCCCCCTCCSEEEEEEESSC------------CHHHHHHHHHHTHSSCEEEEEEETTTT--
T ss_pred CCCCCHHHHHHHHHhHCCCcccHHHhccccEEEEEEeeH------------HHHHHHHHHHHHcCCcccccccccccccc
Confidence 699999999999999875 789999999999998865 49999999999999999999999999999
Q ss_pred CCCccceEEEEeccCCccceeEEEEEechhHHHHHHHHHHHhhcccc
Q 002985 428 PNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRV 474 (861)
Q Consensus 428 ~NGYqSLHt~V~~~~~~~~~~vEIQIRT~~Mh~~AE~G~aahw~YK~ 474 (861)
.|||||+|+.|.......+.++||||||.+||.|||. ..||.||.
T Consensus 69 ~~GYrs~H~~v~~~~~~~~~~~EiQIrT~~~~~waei--~h~~~YK~ 113 (115)
T PF04607_consen 69 SNGYRSLHYIVPENESFKGYPFEIQIRTLLQHAWAEI--EHDLRYKS 113 (115)
T ss_dssp TTS--EEEEEEEETTECEEEEEEEEEEEHHHHHHHHH--HHHHHHHC
T ss_pred cCCcEeeEeeeeecccCCCceeeeeeccHHHHHHHHH--HHHHhCCC
Confidence 9999999999932222346899999999999999994 44666764
No 8
>cd05399 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases. This family includes the catalytic domains of Escherichia coli ppGpp synthetase (RelA), ppGpp synthetase/hydrolase (SpoT), and related proteins. RelA synthesizes (p)ppGpp in response to amino-acid starvation and in association with ribosomes. (p)ppGpp triggers the bacterial stringent response. SpoT catalyzes (p)ppGpp synthesis under carbon limitation in a ribosome-independent manner. It also catalyzes (p)ppGpp degradation. Gram-negative bacteria have two enzymes involved in (p)ppGpp metabolism while most Gram-positive organisms have a single Rel-Spo enzyme (Rel), which both synthesizes and degrades (p)ppGpp. The Arabidopsis thaliana Rel-Spo proteins, At-RSH1,-2, and-3 appear to regulate a rapid (p)ppGpp-mediated response to pathogens and other stresses. This catalytic domain is found in association with an N-terminal HD domain and a C-terminal metal dependent phosphohydro
Probab=99.93 E-value=5.6e-26 Score=218.27 Aligned_cols=123 Identities=32% Similarity=0.507 Sum_probs=103.5
Q ss_pred HHHHHHHhhhhhhcccccceeEEEEeecChhHHHHHHHhcCCCc---ccccceeeEEEEEcCCCCCCCCCCCCcHHHHHH
Q 002985 327 NKILMKKIEDDQFLDLMTVKTEIRSVCKEPYSIYKAVLKSRGSI---NEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYH 403 (861)
Q Consensus 327 ~~~L~~~L~~~~~l~~~~i~~~V~~R~K~~ySI~~Km~rk~~~~---~ei~Dl~giRIIv~~~~~~~~~~~~~~~~dCY~ 403 (861)
...|++.|++.+.. +..+.|.+|+|+++|+++||.+++... ++|+|++|+|||++. ..|||.
T Consensus 4 ~~~l~~~L~~~~~~---~~~~~v~~RvK~~~sl~~Kl~~~~~~~~~~~~i~Dl~g~Rii~~~------------~~d~~~ 68 (129)
T cd05399 4 LEEIADLLRDAGII---GRVASVSGRVKSPYSIYEKLRRKGKDLPILDEITDLVGVRVVLLF------------VDDCYR 68 (129)
T ss_pred HHHHHHHHHHcCCC---CCCcEEEEecCCHHHHHHHHHhhCCCCCcHHHhhhhheEEEEEeC------------HHHHHH
Confidence 34555556554310 126899999999999999999998777 999999999999875 579999
Q ss_pred HHHHhhccccCCCccccccccCCCCCCccceEEEEeccCCccceeEEEEEechhHHHHHHH
Q 002985 404 VLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAER 464 (861)
Q Consensus 404 vlg~vh~~~~pip~~~kDyIa~PK~NGYqSLHt~V~~~~~~~~~~vEIQIRT~~Mh~~AE~ 464 (861)
++++|+..|+++|++++|||+.||+|||||+|++|..+....+.++||||||..||+|||.
T Consensus 69 v~~~l~~~f~~~~~~~~D~~~~p~~~GYrslH~~~~~~~~~~~~~~EIQirT~~~~~wae~ 129 (129)
T cd05399 69 VLDLLHSLFKVIPGRVKDYIAEPKENGYQSLHLVVRGPEDKAGVLIEIQIRTILMHAWAEL 129 (129)
T ss_pred HHHHHHhCCcccCccccCCcCCCCCCCceEEEEEEEcCCCcCCcEEEEEeCCHHHHHHhcC
Confidence 9999999999999999999999999999999999964321124799999999999999984
No 9
>COG2357 PpGpp synthetase catalytic domain [General function prediction only]
Probab=99.91 E-value=3.2e-24 Score=221.33 Aligned_cols=116 Identities=34% Similarity=0.456 Sum_probs=102.2
Q ss_pred eEEEEeecChhHHHHHHHhcCCCc------ccccceeeEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccccCCCcccc
Q 002985 347 TEIRSVCKEPYSIYKAVLKSRGSI------NEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMK 420 (861)
Q Consensus 347 ~~V~~R~K~~ySI~~Km~rk~~~~------~ei~Dl~giRIIv~~~~~~~~~~~~~~~~dCY~vlg~vh~~~~pip~~~k 420 (861)
-.|+||+|++.||..|++|||.++ ++|+|++|+||+ |.+++|.|.+..++.+....-.-..|
T Consensus 53 e~Vt~RvK~~~Si~~Kl~RK~~~i~~~~~~e~i~DIaGIRI~------------c~F~~DI~~v~~~l~~~~d~~iv~~k 120 (231)
T COG2357 53 EHVTSRVKSPESILEKLRRKGLEITYENLKEDIQDIAGIRII------------CQFVDDIYRVVDLLKSRKDFTIVEEK 120 (231)
T ss_pred HHHhhccCCHHHHHHHHHhcCCCCChHHHHhHHHhhcceeEe------------eehHhhHHHHHHHHhcccCccchhHH
Confidence 479999999999999999999543 689999999999 55788999999999987666666899
Q ss_pred ccccCCCCCCccceEEEE-eccC---CccceeEEEEEechhHHHHHHHHHHHhhcccc
Q 002985 421 DYIATPKPNGYQSLHTTL-IPFL---YESMFRLEVQIRTEEMDLIAERGIAAHYSGRV 474 (861)
Q Consensus 421 DyIa~PK~NGYqSLHt~V-~~~~---~~~~~~vEIQIRT~~Mh~~AE~G~aahw~YK~ 474 (861)
|||.+||+|||||+|++| +|-. +.....+||||||..||.||++.|...|+|.+
T Consensus 121 Dyi~n~k~~GYRS~Hlive~pv~~~~~~~~~~vEIQIRTiam~fWAsiEH~l~YKy~~ 178 (231)
T COG2357 121 DYIRNPKPNGYRSYHLILEVPVFTINGVKKVRVEIQIRTIAMDFWASIEHKLRYKYGG 178 (231)
T ss_pred HHHhCCCCCCCceEEEEEeccchhhccccceEEEEehhHHHHHHHHHHHHHhhccccc
Confidence 999999999999999999 4422 34568999999999999999999999999986
No 10
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=99.70 E-value=1.5e-17 Score=140.01 Aligned_cols=60 Identities=53% Similarity=0.854 Sum_probs=58.1
Q ss_pred eeeecCCCceEecCCCCcHHHHHHhhccccccceEEEEECCEecCCCccCCCCCeEEEEe
Q 002985 541 VFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIIT 600 (861)
Q Consensus 541 I~VftP~G~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~l~~~L~~gd~VeIit 600 (861)
|+||||||++++||+|+||+||||+||+++|+++++|+|||++++|+++|++||+|||+|
T Consensus 1 I~v~lpdG~~~~~~~g~T~~d~A~~I~~~l~~~~~~A~Vng~~vdl~~~L~~~d~v~iiT 60 (60)
T PF02824_consen 1 IRVYLPDGSIKELPEGSTVLDVAYSIHSSLAKRAVAAKVNGQLVDLDHPLEDGDVVEIIT 60 (60)
T ss_dssp EEEEETTSCEEEEETTBBHHHHHHHHSHHHHHCEEEEEETTEEEETTSBB-SSEEEEEEE
T ss_pred CEEECCCCCeeeCCCCCCHHHHHHHHCHHHHhheeEEEEcCEECCCCCCcCCCCEEEEEC
Confidence 689999999999999999999999999999999999999999999999999999999998
No 11
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=99.44 E-value=6.9e-13 Score=117.08 Aligned_cols=77 Identities=27% Similarity=0.362 Sum_probs=67.4
Q ss_pred CceeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeeec
Q 002985 769 GHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWST 845 (861)
Q Consensus 769 ~~~~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~Vs~ 845 (861)
..|.+.|+|.+.||+|+|+||+++|++.++||.++++.+..+++.+.+.|+|+ +|.+||.++|++|++++||++|.|
T Consensus 3 ~~f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V~R 80 (80)
T PF13291_consen 3 KSFPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQIPGVISVER 80 (80)
T ss_dssp --EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTSTTEEEEEE
T ss_pred cEEEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCCCCeeEEEC
Confidence 34678999999999999999999999999999999998753368999999999 999999999999999999999975
No 12
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.28 E-value=4.1e-12 Score=111.66 Aligned_cols=60 Identities=35% Similarity=0.514 Sum_probs=54.3
Q ss_pred eeeec-CCC------ceEecCCCCcHHHHHHhhccccccceEEEEE-------CCEecCCCccCCCCCeEEEEe
Q 002985 541 VFVFT-PRG------EIKNLPKGATVVDYAYMIHTEIGNKMVAAKV-------NGNLVSPTHVLANAEVVEIIT 600 (861)
Q Consensus 541 I~Vft-P~G------~i~~lp~gaT~lDfAy~iht~ig~~~~~akV-------ng~~v~l~~~L~~gd~VeIit 600 (861)
|.||| |+| +.+.||+|||+.||||+||+++++.+..|+| +|+.|+++++|++||+|||++
T Consensus 2 irvytk~~g~~~d~~~~liL~~GaTV~D~a~~iH~di~~~f~~A~v~g~s~~~~gq~Vgl~~~L~d~DvVeI~~ 75 (75)
T cd01666 2 IRVYTKPKGQEPDFDEPVILRRGSTVEDVCNKIHKDLVKQFKYALVWGSSVKHSPQRVGLDHVLEDEDVVQIVK 75 (75)
T ss_pred EEEEeCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHhCCeeEEeccCCcCCCeECCCCCEecCCCEEEEeC
Confidence 56777 333 7999999999999999999999999999986 999999999999999999985
No 13
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.16 E-value=2.8e-11 Score=106.77 Aligned_cols=52 Identities=37% Similarity=0.600 Sum_probs=47.9
Q ss_pred CceEecCCCCcHHHHHHhhccccccceEE---EEECCEecCCCccCCCCCeEEEEe
Q 002985 548 GEIKNLPKGATVVDYAYMIHTEIGNKMVA---AKVNGNLVSPTHVLANAEVVEIIT 600 (861)
Q Consensus 548 G~i~~lp~gaT~lDfAy~iht~ig~~~~~---akVng~~v~l~~~L~~gd~VeIit 600 (861)
++.+.||+|+|+.||||+||+++|++++. ++ ||+.++++|+|++||+|+|+|
T Consensus 22 ~d~~~l~~GaTv~D~A~~IHtdi~~~f~~Ai~~k-~~~~vg~~~~L~dgDvV~Ii~ 76 (76)
T cd01669 22 PDAFLLPKGSTARDLAYAIHTDIGDGFLHAIDAR-TGRRVGEDYELKHRDVIKIVS 76 (76)
T ss_pred cceEEECCCCCHHHHHHHHHHHHHhcceeeEEee-CCEEeCCCcEecCCCEEEEeC
Confidence 36899999999999999999999999665 46 999999999999999999997
No 14
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=99.10 E-value=3.6e-10 Score=98.66 Aligned_cols=68 Identities=21% Similarity=0.267 Sum_probs=62.1
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeeecc
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWSTG 846 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~Vs~g 846 (861)
+|.|++.||+|+|+||+++|++.++||.++++.++ +. +.|+++ .|.+||..++++|++++||++|.+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~---~~--i~l~i~v~~~~~L~~li~~L~~i~gV~~V~R~ 70 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK---GR--IYLNFPTIEFEKLQTLMPEIRRIDGVEDVKTV 70 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC---Ce--EEEEeEecCHHHHHHHHHHHhCCCCceEEEEe
Confidence 58999999999999999999999999999998643 33 888899 9999999999999999999999874
No 15
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.03 E-value=1.5e-09 Score=93.97 Aligned_cols=69 Identities=23% Similarity=0.209 Sum_probs=63.3
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeee
Q 002985 775 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWS 844 (861)
Q Consensus 775 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~Vs 844 (861)
|+|++.||+|+|++|+++|++.|+||.++++... ..+.+.+.|+|+ .|.+||.+++.+|++++||+--+
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~vev~~~~~l~~i~~~L~~i~gV~~~~ 71 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQ-GRDYTVRDITVDAPSEEHAETIVAAVRALPEVKVLS 71 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEe-cCCEEEEEEEEEcCCHHHHHHHHHHHhcCCCeEEEE
Confidence 7899999999999999999999999999998754 357899999999 99999999999999999998543
No 16
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.98 E-value=2.5e-09 Score=92.70 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=64.3
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHH-HHHHHHHHhccccCeeeeec
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLE-SLVNACSSVDLILGVLGWST 845 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~-~L~~l~~~L~~I~gV~~Vs~ 845 (861)
.|.|++.||+|+|++|+++|++.++||..++.... ..+.+.+.|+++ .+.+ +|.+++++|++++||++|..
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~-~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIP-IHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCC-CCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 58999999999999999999999999999987533 246799999999 9998 99999999999999999974
No 17
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=98.90 E-value=4e-09 Score=87.51 Aligned_cols=60 Identities=63% Similarity=1.042 Sum_probs=57.5
Q ss_pred eeeecCCCceEecCCCCcHHHHHHhhccccccceEEEEECCEecCCCccCCCCCeEEEEe
Q 002985 541 VFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIIT 600 (861)
Q Consensus 541 I~VftP~G~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~l~~~L~~gd~VeIit 600 (861)
||||+|+|+.+++|.|.|+.|++..++..+....+++++||++++++++|++||.|+++|
T Consensus 1 ~~~~~~~g~~~~~~~~~t~~~~~~~~~~~~~~~~va~~vng~~vdl~~~l~~~~~ve~v~ 60 (60)
T cd01668 1 IYVFTPKGEIIELPAGATVLDFAYAIHTEIGNRCVGAKVNGKLVPLSTVLKDGDIVEIIT 60 (60)
T ss_pred CEEECCCCCEEEcCCCCCHHHHHHHHChHhhhheEEEEECCEECCCCCCCCCCCEEEEEC
Confidence 699999999999999999999999999988889999999999999999999999999985
No 18
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=98.65 E-value=1.8e-07 Score=78.97 Aligned_cols=70 Identities=20% Similarity=0.292 Sum_probs=62.6
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeee
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWS 844 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~Vs 844 (861)
.|.|.+.|++|+|++|+++|++.++||.+++.....+.+.+.+.|+++ .+ +++..++++|++++||.+|+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~v~~v~ 72 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDD-DVIEQIVKQLNKLVDVLKVS 72 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCH-HHHHHHHHHHhCCccEEEeC
Confidence 378899999999999999999999999999876442457788999999 78 99999999999999999986
No 19
>PRK04435 hypothetical protein; Provisional
Probab=98.56 E-value=4.4e-07 Score=90.03 Aligned_cols=74 Identities=20% Similarity=0.237 Sum_probs=66.5
Q ss_pred eeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHH-HHHHHHHHhccccCeeeeec
Q 002985 771 SIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLE-SLVNACSSVDLILGVLGWST 845 (861)
Q Consensus 771 ~~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~-~L~~l~~~L~~I~gV~~Vs~ 845 (861)
..+.|.+.+.|++|+|++|+++|++.++||..++.... .++.+.+.|+|+ .+.+ +|..++++|++++||.+|..
T Consensus 68 r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~-~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i 143 (147)
T PRK04435 68 KIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIP-LQGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKVEL 143 (147)
T ss_pred cEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcC-CCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEE
Confidence 36789999999999999999999999999999986533 357899999999 8987 99999999999999999874
No 20
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.55 E-value=2.8e-07 Score=79.20 Aligned_cols=69 Identities=22% Similarity=0.319 Sum_probs=61.6
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeee
Q 002985 775 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGW 843 (861)
Q Consensus 775 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~V 843 (861)
|+|.+.|++|+|++|+++|++.++||.+++.....+.+.+.+.|.++ .+.++|..++++|++++||.++
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~i~~L~~~~~V~~~ 72 (79)
T cd04881 3 LRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEALDAVQGV 72 (79)
T ss_pred EEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCHHHHHHHHHHHHcCccccCC
Confidence 78899999999999999999999999999875432236788999998 9999999999999999999875
No 21
>PRK08577 hypothetical protein; Provisional
Probab=98.48 E-value=8.3e-07 Score=86.72 Aligned_cols=74 Identities=22% Similarity=0.195 Sum_probs=66.2
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCH-HHHHHHHHHhccccCeeeeec
Q 002985 772 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNL-ESLVNACSSVDLILGVLGWST 845 (861)
Q Consensus 772 ~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~-~~L~~l~~~L~~I~gV~~Vs~ 845 (861)
.+.|.|.+.|++|+|++|+++|++.++||.++++.+...++.+.+.|+++ .+. .+|..++++|++++||.+|..
T Consensus 56 ~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l~~V~~V~~ 131 (136)
T PRK08577 56 LVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKLEEVKEVEI 131 (136)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcCCCEEEEEE
Confidence 56799999999999999999999999999999887654457788899999 776 899999999999999999863
No 22
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.47 E-value=2.4e-07 Score=81.92 Aligned_cols=52 Identities=23% Similarity=0.304 Sum_probs=49.3
Q ss_pred ceEecCCCCcHHHHHHhhccccccceEEEEECC-EecCCCccCCCCCeEEEEe
Q 002985 549 EIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNG-NLVSPTHVLANAEVVEIIT 600 (861)
Q Consensus 549 ~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng-~~v~l~~~L~~gd~VeIit 600 (861)
+.+.||+|+|+.|||+.||+++....+.|.|-| +.+.+++.|++||+|+|++
T Consensus 24 ~~~~l~~g~tv~d~a~~IH~d~~~~F~~A~v~~~~~vg~d~~l~d~DVv~i~~ 76 (76)
T cd04938 24 DCVLVKKGTTVGDVARKIHGDLEKGFIEAVGGRRRLEGKDVILGKNDILKFKT 76 (76)
T ss_pred eeEEEcCCCCHHHHHHHHhHHHHhccEEEEEccCEEECCCEEecCCCEEEEEC
Confidence 688999999999999999999999999999987 8999999999999999975
No 23
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.47 E-value=4.4e-07 Score=73.65 Aligned_cols=59 Identities=44% Similarity=0.771 Sum_probs=54.9
Q ss_pred eeecCCCceEecCCCCcHHHHHHhhccccccceEEEEECCEecCCCccCCCCCeEEEEe
Q 002985 542 FVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIIT 600 (861)
Q Consensus 542 ~VftP~G~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~l~~~L~~gd~VeIit 600 (861)
.++.++|+.+.+|+|+|+.|++..+|.......+++++||++++|+++|.+||.|+++|
T Consensus 2 ~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~vn~~~~~l~~~l~~~~~i~~i~ 60 (60)
T cd01616 2 IIFTPDGSAVELPKGATAMDFALKIHTDLGKGFIGALVNGQLVDLSYTLQDGDTVSIVT 60 (60)
T ss_pred EEECCCCCEEEcCCCCCHHHHHHHHHHHHHhheEEEEECCEECCCCcCcCCCCEEEEeC
Confidence 35677899999999999999999999988889999999999999999999999999985
No 24
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=98.46 E-value=1.9e-07 Score=79.35 Aligned_cols=65 Identities=14% Similarity=0.239 Sum_probs=57.7
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeee
Q 002985 775 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWS 844 (861)
Q Consensus 775 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~Vs 844 (861)
|.+.+.|++|+|++|+++|++.|+||.+++..++ + +.+.+.|+++ . ++..++++|++++||++|.
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~-~-~~a~~~~~~~~~---~l~~li~~l~~~~~V~~v~ 67 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTR-G-EIGYVVIDIDSE---VSEELLEALRAIPGTIRVR 67 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCC-C-CEEEEEEEcCCC---CCHHHHHHHHcCCCeEEEE
Confidence 5678999999999999999999999999876532 2 7889999988 5 9999999999999999986
No 25
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.39 E-value=2.6e-07 Score=105.41 Aligned_cols=63 Identities=30% Similarity=0.500 Sum_probs=54.3
Q ss_pred CceeeecC---------CC----ceEecCCCCcHHHHHHhhccccccceEEEEE--CCEecCCCccCCCCCeEEEEec
Q 002985 539 SRVFVFTP---------RG----EIKNLPKGATVVDYAYMIHTEIGNKMVAAKV--NGNLVSPTHVLANAEVVEIITY 601 (861)
Q Consensus 539 ~~I~VftP---------~G----~i~~lp~gaT~lDfAy~iht~ig~~~~~akV--ng~~v~l~~~L~~gd~VeIit~ 601 (861)
+-|.|||- +| +.+.||+|+|+.||||.||++++++++.|.. +++.++++|+|++||+|+|+|+
T Consensus 318 ~li~~yt~~~~~~~~~~~g~~~~~~~~l~~g~t~~d~A~~IH~d~~~~fi~A~~~~~~~~~g~~~~l~dgDiv~i~~~ 395 (396)
T PRK09602 318 DMIVVYPVEDENKLTDKKGNVLPDAFLLPKGSTARDLAYKIHTDIGEGFLYAIDARTKRRIGEDYELKDGDVIKIVST 395 (396)
T ss_pred CCEEEEecCcccccccccCcccceeEEECCCCCHHHHHHHHHHHHHhhceehhcccCCcccCCCcEecCCCEEEEEeC
Confidence 57888882 22 3999999999999999999999999765433 7899999999999999999985
No 26
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=98.36 E-value=3e-06 Score=74.94 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=65.8
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeeec
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWST 845 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~gV~~Vs~ 845 (861)
.|.+.+.|++|+|+.|+.+++..|.||.|+++....+.+...|++++.+|-+.+.+++++|.++.+|++|..
T Consensus 4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KLidV~~V~~ 75 (76)
T PRK06737 4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKLINVLQVNK 75 (76)
T ss_pred EEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCCcCEEEEEe
Confidence 488999999999999999999999999999987655668899999999899999999999999999999863
No 27
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=98.35 E-value=1.3e-06 Score=73.41 Aligned_cols=68 Identities=21% Similarity=0.313 Sum_probs=58.7
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeee
Q 002985 775 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWS 844 (861)
Q Consensus 775 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~gV~~Vs 844 (861)
|.|.+.|++|+|++|+++|++.++||.++........+.+.+.|+++ +. ++..++++|++++||.+|.
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~-~~-~~~~l~~~l~~~~~V~~v~ 69 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVD-SP-VPEEVLEELKALPGIIRVR 69 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcC-CC-CCHHHHHHHHcCCCeEEEE
Confidence 67899999999999999999999999999886543246788888886 43 6889999999999999986
No 28
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=98.35 E-value=2.7e-06 Score=76.25 Aligned_cols=71 Identities=17% Similarity=0.165 Sum_probs=66.5
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeee
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWS 844 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~Vs 844 (861)
.|.+.+.|++|+|+.||.+++..|.||.|+++....+.+..+|+++++ +|.+.+.+++.+|+++-+|+.|.
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~KlidVikV~ 75 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTVE 75 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCCccEEEEE
Confidence 488899999999999999999999999999987666678999999998 99999999999999999999986
No 29
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=98.28 E-value=2.4e-06 Score=69.78 Aligned_cols=58 Identities=43% Similarity=0.596 Sum_probs=54.4
Q ss_pred eecCCCceEecCCCCcHHHHHHhhccccccceEEEEECCEecCCCccCCCCCeEEEEe
Q 002985 543 VFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIIT 600 (861)
Q Consensus 543 VftP~G~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~l~~~L~~gd~VeIit 600 (861)
+..|+|+.+.+|.|+|+.|+|+.++...+...++|++||++++|.+++.+|+.|++++
T Consensus 3 i~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~v~~~vng~~~dL~~~l~~~~~ie~i~ 60 (61)
T cd01667 3 ITLPDGSVKEFPKGTTPLDIAKSISPGLAKKAVAAKVNGELVDLSRPLEEDCELEIIT 60 (61)
T ss_pred EEcCCCCEEEeCCCCCHHHHHHHHHHHHHhheEEEEECCEEecCCcCcCCCCEEEEEe
Confidence 5568899999999999999999999988899999999999999999999999999987
No 30
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.21 E-value=5.2e-06 Score=69.88 Aligned_cols=68 Identities=21% Similarity=0.188 Sum_probs=56.9
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeee
Q 002985 775 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWS 844 (861)
Q Consensus 775 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~gV~~Vs 844 (861)
|.|++.|++|+|++|+++|++.++||.++......+.+.+.+.|.++ +. ++..++++|++++||.+|.
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~-~~-~~~~~i~~l~~~~~v~~v~ 69 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVD-QP-IDEEVIEEIKKIPNIHQVI 69 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeC-CC-CCHHHHHHHHcCCCceEEE
Confidence 67899999999999999999999999999876422345666666666 44 8999999999999999985
No 31
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.20 E-value=6.9e-06 Score=68.72 Aligned_cols=65 Identities=28% Similarity=0.402 Sum_probs=51.9
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccccC
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILG 839 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~g 839 (861)
.|.|.+.||+|+|++|+++|++.++||.++...+..+. ...+.+.+..+..++.+++++|++++|
T Consensus 2 ~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~ 66 (66)
T PF01842_consen 2 RVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDG-VGIVFIVIVVDEEDLEKLLEELEALPG 66 (66)
T ss_dssp EEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESST-TEEEEEEEEEEGHGHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCC-ceEEEEEEECCCCCHHHHHHHHHcccC
Confidence 47889999999999999999999999999998876432 233333333688888889999988876
No 32
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=98.18 E-value=9e-06 Score=71.96 Aligned_cols=71 Identities=11% Similarity=0.115 Sum_probs=64.7
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeeec
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWST 845 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~gV~~Vs~ 845 (861)
.|.|.+.|++|+|+.|+.+++..|.||.++++....+.+..+|+++++ |-..++.++++|.++.+|.+|..
T Consensus 5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~-~~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA-SERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred EEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC-CCchHHHHHHHHhcCcCeEEEEE
Confidence 488999999999999999999999999999987655667899999996 88999999999999999999974
No 33
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.17 E-value=7.7e-06 Score=69.12 Aligned_cols=63 Identities=17% Similarity=0.190 Sum_probs=54.6
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeEec---CCcEEEEEEEEE-cCHHHHHHHHHHhccc
Q 002985 775 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDR---GRGIAVMLFHVE-GNLESLVNACSSVDLI 837 (861)
Q Consensus 775 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~---~~~~a~m~ftVE-~d~~~L~~l~~~L~~I 837 (861)
|.|++.|++|+|++|+++|++.|+||.++.+.... ..+.+.+.|+++ .+.++|..++.+|++-
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~ 67 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREA 67 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 46788999999999999999999999999876432 246788999999 9999999999999874
No 34
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=98.15 E-value=1.7e-05 Score=64.81 Aligned_cols=70 Identities=31% Similarity=0.467 Sum_probs=61.8
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeeec
Q 002985 775 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWST 845 (861)
Q Consensus 775 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~Vs~ 845 (861)
|+|.+.|++|++++|++.+++.++||.++..... +.+.+.+.|+++ .+..++..+++.|..++||..|.+
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~r 71 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTD-DDGLATIRLTLEVRDLEHLARIMRKLRQIPGVIDVRR 71 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEEC-CCCEEEEEEEEEECCHHHHHHHHHHHhCCCCcEEEEC
Confidence 4678999999999999999999999999987643 336678889999 899999999999999999999875
No 35
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.12 E-value=1.8e-05 Score=66.93 Aligned_cols=70 Identities=19% Similarity=0.240 Sum_probs=59.2
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeeec
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWST 845 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~gV~~Vs~ 845 (861)
.|+|.+.|++|+|++|++.|++.++||.+++.... ..+.+.+.|.++ +.+++..++++|++++||+.|..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~-~~~~~~~~i~~~-~~~~~~~~~~~L~~~~~v~~v~~ 71 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE-REGKARIYMELE-GVGDIEELVEELRSLPIVREVEI 71 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc-CCCeEEEEEEEe-ccccHHHHHHHHhCCCCeEEEEe
Confidence 47889999999999999999999999999987644 235666776666 44899999999999999999864
No 36
>PRK07334 threonine dehydratase; Provisional
Probab=98.10 E-value=1.2e-05 Score=92.06 Aligned_cols=70 Identities=17% Similarity=0.104 Sum_probs=62.2
Q ss_pred ceeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEe---cCCcEEEEEEEEE-cCHHHHHHHHHHhccccC
Q 002985 770 HSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEID---RGRGIAVMLFHVE-GNLESLVNACSSVDLILG 839 (861)
Q Consensus 770 ~~~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~---~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~g 839 (861)
.+.+.|+|++.||+|+|+||+++|++.++||.++++.++ ...+.+.+.|+|+ +|.+||.++|++|+++.-
T Consensus 324 ~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~~~L~~vi~~Lr~~g~ 397 (403)
T PRK07334 324 GRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDAAHLQEVIAALRAAGF 397 (403)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 456899999999999999999999999999999998754 0257899999999 999999999999998743
No 37
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=98.05 E-value=2.4e-05 Score=71.96 Aligned_cols=72 Identities=13% Similarity=0.123 Sum_probs=64.1
Q ss_pred EEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeeec
Q 002985 773 QWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWST 845 (861)
Q Consensus 773 a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~gV~~Vs~ 845 (861)
-.|.|.+.|++|+|+.|+.+++..|.||.|+++-.....+..+|++.+. +-+.+.+++.+|.++.+|++|..
T Consensus 9 ~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~~~~i~Qi~kQL~KLidVikV~~ 80 (96)
T PRK08178 9 VILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-DDQRLEQMISQIEKLEDVLKVRR 80 (96)
T ss_pred EEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-CchHHHHHHHHHhCCcCEEEEEE
Confidence 3589999999999999999999999999999876555667899999888 55899999999999999999864
No 38
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=98.04 E-value=1.1e-05 Score=82.38 Aligned_cols=70 Identities=23% Similarity=0.366 Sum_probs=56.6
Q ss_pred hcCCCcccCC--CccchHHHHHHHHHHcCCCHHHHHHHhhccc---cccCCC-------------CCHHHHHHHhCHHHH
Q 002985 160 HDGQKRRSGE--PFIIHPVEVARILGELELDWESIAAGLLHDT---VEDTNV-------------VTFERIEEEFGATVR 221 (861)
Q Consensus 160 H~gQ~RksGe--PYi~Hpl~VA~ILa~l~lD~~ti~AALLHDv---vEDt~~-------------~t~e~I~~~FG~~Va 221 (861)
+.|+..-+|+ ||+.|++++|.+..+-|.|.+.++||||||+ ++|+.. +..+.|+..||++|+
T Consensus 13 ~~g~~~y~Ge~Vs~leH~LQ~A~lA~~~Gad~elvvAALLHDIGhll~~~~~~~~~~g~~~~He~iga~~Lr~~F~~~V~ 92 (179)
T TIGR03276 13 EHGARQYGGEAVSQLEHALQCAQLAEAAGADDELIVAAFLHDIGHLLADEGATPMGRGGDDHHEELAADYLRELFSPSVT 92 (179)
T ss_pred hcCccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcchhhhcccccccccCCCccHHHHHHHHHHHHcCHHHH
Confidence 3445556676 6899999999998899999999999999998 776431 125788999999999
Q ss_pred HHHHhhcc
Q 002985 222 RIVEGETK 229 (861)
Q Consensus 222 ~LV~gvTk 229 (861)
.+|..-..
T Consensus 93 ~lV~~Hv~ 100 (179)
T TIGR03276 93 EPIRLHVQ 100 (179)
T ss_pred HHHHHHHH
Confidence 99998654
No 39
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=97.98 E-value=4e-05 Score=77.22 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=65.3
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeeec
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWST 845 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~gV~~Vs~ 845 (861)
.|.|.+.|++|+|++|+.++++.|+||.|+.+....+.+...|.|+++.|-+.+.+++.+|.++.+|++|..
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KLidV~~V~~ 75 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKLIDVLKVVD 75 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhccccEEEEEe
Confidence 488899999999999999999999999999876544457899999999899999999999999999999975
No 40
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=97.93 E-value=4.2e-05 Score=65.26 Aligned_cols=63 Identities=16% Similarity=0.276 Sum_probs=55.7
Q ss_pred ccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeee
Q 002985 781 DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGW 843 (861)
Q Consensus 781 DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~gV~~V 843 (861)
|++|+|..|+.+++..|.||.++++....+.+.+.|+++++++-+.+..++.+|.++.+|.+|
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~~Ql~KlidV~~V 63 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLVKQLEKLIDVVKV 63 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHHHHHHCSTTEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHHHHHhccCCeEeC
Confidence 789999999999999999999999987556788999999997678999999999999999987
No 41
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=97.91 E-value=6.5e-05 Score=75.43 Aligned_cols=72 Identities=18% Similarity=0.237 Sum_probs=65.0
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeeec
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWST 845 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~gV~~Vs~ 845 (861)
.|.|.+.|++|+|++|+.++++.|+||.|+.+....+.+...|.|+++.|-+.+.++..+|.++-+|+.|..
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~~~i~qi~kQl~Kli~V~~V~~ 74 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITKQLNKLVDVIKVSD 74 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCHHHHHHHHHHHhcCccEEEEEe
Confidence 488999999999999999999999999999877554467899999999778899999999999999999865
No 42
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.88 E-value=1.8e-05 Score=95.67 Aligned_cols=64 Identities=31% Similarity=0.452 Sum_probs=60.4
Q ss_pred ceeeecCCCceEecCCCCcHHHHHHhhccccccceEEEEECCEecCCCccCCCCCeEEEEecCC
Q 002985 540 RVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNA 603 (861)
Q Consensus 540 ~I~VftP~G~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~l~~~L~~gd~VeIit~~~ 603 (861)
++.|..|+|.++++|+|+|++|+|+.++++.++.+++|+|||++++|++++.+++.||++|...
T Consensus 1 ~~~i~~~~g~~~~~~~gtt~~dia~~~~~~~~~~~v~a~vng~l~dL~~~l~~d~~Vefi~~~~ 64 (638)
T PRK00413 1 MIKITLPDGSVREFEAGVTVADVAASISPGLAKAAVAGKVNGELVDLSTPIEEDASLEIITAKD 64 (638)
T ss_pred CcEEEeCCCCEEEeCCCCCHHHHHHHhhhhchhheEEEEECCEEeeCCccccCCCceeeeeccc
Confidence 3678889999999999999999999999999999999999999999999999999999999754
No 43
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=97.71 E-value=0.00011 Score=74.96 Aligned_cols=72 Identities=18% Similarity=0.269 Sum_probs=61.1
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeeec
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWST 845 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~gV~~Vs~ 845 (861)
.|.|.+.|+||+|+.||.+++..|+||.++++......+...|++.+.++-..++.+..+|.++-+|+.|..
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~KLidVl~V~~ 75 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYKLVNILKVQD 75 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHHHhHhhEEEe
Confidence 488999999999999999999999999999997644557788888888655558888888888888888754
No 44
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=97.69 E-value=3.4e-05 Score=84.51 Aligned_cols=62 Identities=35% Similarity=0.493 Sum_probs=54.7
Q ss_pred Cceeeec-CCC------ceEecCCCCcHHHHHHhhccccccceEEEEE-------CCEecCCCccCCCCCeEEEEe
Q 002985 539 SRVFVFT-PRG------EIKNLPKGATVVDYAYMIHTEIGNKMVAAKV-------NGNLVSPTHVLANAEVVEIIT 600 (861)
Q Consensus 539 ~~I~Vft-P~G------~i~~lp~gaT~lDfAy~iht~ig~~~~~akV-------ng~~v~l~~~L~~gd~VeIit 600 (861)
+-|.||| |+| +.+-|.+|+|+.|||-+||.++......|+| +|+.|.++|+|+++|+|+|+.
T Consensus 289 ~liRVYtK~~g~~pd~~~PlIlr~GsTV~Dvc~~IH~~l~~~FryA~VWGkSvk~~~QrVG~dHvLeD~DIV~I~~ 364 (365)
T COG1163 289 GLIRVYTKPPGEEPDFDEPLILRRGSTVGDVCRKIHRDLVENFRYARVWGKSVKHPGQRVGLDHVLEDEDIVEIHA 364 (365)
T ss_pred CeEEEEecCCCCCCCCCCCeEEeCCCcHHHHHHHHHHHHHHhcceEEEeccCCCCCccccCcCcCccCCCeEEEee
Confidence 4688888 445 6788899999999999999999999888888 778999999999999999974
No 45
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.66 E-value=0.00024 Score=61.80 Aligned_cols=61 Identities=31% Similarity=0.376 Sum_probs=49.2
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-c----CHHHHHHHHHHhc
Q 002985 775 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-G----NLESLVNACSSVD 835 (861)
Q Consensus 775 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~----d~~~L~~l~~~L~ 835 (861)
|.|.+.||+|++++||++|++.|+||..++..+....+...|.+.+. . +.++|...+.++.
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~ 67 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVA 67 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999999999887644556677777777 3 4677777666665
No 46
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=97.54 E-value=0.00031 Score=60.07 Aligned_cols=68 Identities=24% Similarity=0.347 Sum_probs=54.7
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeee
Q 002985 775 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWS 844 (861)
Q Consensus 775 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~gV~~Vs 844 (861)
+.|...|++|.|++|+++|++.|+||.++........+.+.+.|.++.+. -..++++|++++||..|+
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~~--~~~~~~~l~~~~~v~~v~ 69 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPV--PDEVLEELRALPGILSAK 69 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCCC--CHHHHHHHHcCCCccEEE
Confidence 45689999999999999999999999998765332346788888888322 348889999999998876
No 47
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.53 E-value=0.00035 Score=61.18 Aligned_cols=64 Identities=25% Similarity=0.278 Sum_probs=50.5
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE--c--CHHHHHHHHHHhccccCe
Q 002985 775 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE--G--NLESLVNACSSVDLILGV 840 (861)
Q Consensus 775 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE--~--d~~~L~~l~~~L~~I~gV 840 (861)
|.|.+.||+|++++||++|++.|+||.+++..... +.+.|.+.++ . +.+.|...+.++.+-.||
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~--~~f~~~~~v~~p~~~~~~~l~~~l~~l~~~l~l 69 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIH--GRLSLGILVQIPDSADSEALLKDLLFKAHELGL 69 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEc--CeeEEEEEEEcCCCCCHHHHHHHHHHHHHHcCc
Confidence 67899999999999999999999999999766443 5677777777 3 477777777776655444
No 48
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.46 E-value=0.00044 Score=60.80 Aligned_cols=61 Identities=25% Similarity=0.252 Sum_probs=45.2
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeEec----CCcEEEEEEEEE-c---CHHHHHHHHHHhc
Q 002985 775 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDR----GRGIAVMLFHVE-G---NLESLVNACSSVD 835 (861)
Q Consensus 775 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~----~~~~a~m~ftVE-~---d~~~L~~l~~~L~ 835 (861)
|.|.+.|++|++++||++|++.|+||.+++..+.. ..+.+.|.+++. . +.+.|..-+.++-
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l~ 70 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEELC 70 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999999999887653 225566666666 3 3444444444443
No 49
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=97.42 E-value=0.00058 Score=60.32 Aligned_cols=64 Identities=23% Similarity=0.254 Sum_probs=47.7
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE---cCHHHHHHHHHHhccccC
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE---GNLESLVNACSSVDLILG 839 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE---~d~~~L~~l~~~L~~I~g 839 (861)
-|.+.+.||+|+++.||++|++.|+||..++..... +.+.|.+.++ .+.+.|...+..+.+--|
T Consensus 3 iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~--~~F~m~~~~~~~~~~~~~l~~~l~~~~~~~~ 69 (77)
T cd04893 3 VISALGTDRPGILNELTRAVSESGCNILDSRMAILG--TEFALTMLVEGSWDAIAKLEAALPGLARRLD 69 (77)
T ss_pred EEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEc--CEEEEEEEEEeccccHHHHHHHHHHHHHHcC
Confidence 378999999999999999999999999999877543 3444544444 456777776666654333
No 50
>PTZ00258 GTP-binding protein; Provisional
Probab=97.38 E-value=0.00022 Score=81.24 Aligned_cols=66 Identities=21% Similarity=0.331 Sum_probs=57.4
Q ss_pred cccCCceeeec--CC-CceEecCCCCcHHHHHHhhccccccceEEEEE----------------C-C--EecCCCccCCC
Q 002985 535 DLLGSRVFVFT--PR-GEIKNLPKGATVVDYAYMIHTEIGNKMVAAKV----------------N-G--NLVSPTHVLAN 592 (861)
Q Consensus 535 dl~~~~I~Vft--P~-G~i~~lp~gaT~lDfAy~iht~ig~~~~~akV----------------n-g--~~v~l~~~L~~ 592 (861)
+++ +-|.+|| |+ -+.+.+|+|+|+.|+|+.||||+++..+.|.| . | +++..+|.|++
T Consensus 300 ~lL-~li~ffT~g~~e~raw~i~~Gsta~~aAg~IHsD~~kgFi~Aev~~~~d~~~~g~~~~ak~~g~~r~eGkdYiv~D 378 (390)
T PTZ00258 300 KLL-NLIHFFTAGPDEVRCWTIQKGTKAPQAAGVIHSDFEKGFICAEVMKYEDFLELGSEAAVKAEGKYRQEGKDYVVQD 378 (390)
T ss_pred HHh-CCEEEEcCCCCceeEEEeCCCCcHHHHHhhhhhHHhhCcEEEEECcHHHHHHcCCHHHHHhcCceeeeCCceEecC
Confidence 444 4777888 33 48999999999999999999999999999999 3 6 79999999999
Q ss_pred CCeEEEEec
Q 002985 593 AEVVEIITY 601 (861)
Q Consensus 593 gd~VeIit~ 601 (861)
||+|++..+
T Consensus 379 GDIi~f~fn 387 (390)
T PTZ00258 379 GDIIFFKFN 387 (390)
T ss_pred CCEEEEEec
Confidence 999999874
No 51
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.32 E-value=0.00073 Score=59.45 Aligned_cols=62 Identities=29% Similarity=0.282 Sum_probs=44.6
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccc
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLI 837 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I 837 (861)
-|.|.+.||+|+++.|+.+|++.|+||..++...-. +.+.+.+.|+.+-+.+.++.+.|+++
T Consensus 4 vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~--~~f~~~~~v~~~~~~~~~l~~~L~~l 65 (76)
T PF13740_consen 4 VITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLG--GRFTLIMLVSIPEDSLERLESALEEL 65 (76)
T ss_dssp EEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEET--TEEEEEEEEEESHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEc--CeEEEEEEEEeCcccHHHHHHHHHHH
Confidence 478999999999999999999999999999887653 45666677762244555555555544
No 52
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.29 E-value=0.0018 Score=56.39 Aligned_cols=62 Identities=23% Similarity=0.232 Sum_probs=50.3
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-c------CHHHHHHHHHHhcc
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-G------NLESLVNACSSVDL 836 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~------d~~~L~~l~~~L~~ 836 (861)
.|.|.+.||+|+|++|+.+|+..|+||.++.+.+. +++.+.-.|.|. . +.+.+.++...|.+
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~-~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~ 71 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTT-RDGYALDTFVVLDPDGEPIGERERLARIREALED 71 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEe-CCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHh
Confidence 68899999999999999999999999999998765 346787788886 2 34566777776654
No 53
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.26 E-value=0.0013 Score=56.80 Aligned_cols=62 Identities=13% Similarity=0.159 Sum_probs=47.9
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeEe---cCCcEEEEEEEEEcCHHHHHHHHHHhccc
Q 002985 775 FSVVCIDRRGIMADVTTALATVGVTICSCVAEID---RGRGIAVMLFHVEGNLESLVNACSSVDLI 837 (861)
Q Consensus 775 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~---~~~~~a~m~ftVE~d~~~L~~l~~~L~~I 837 (861)
|.|...|++|.|++|+++|++.|+||.++..... .+.....++++++ ...++..++++|++.
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e-~~~~~~~i~~~L~~~ 66 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPM-DRSKENELIEELKAK 66 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEe-cchHHHHHHHHHhCc
Confidence 6789999999999999999999999999976532 2223456666666 333588999998765
No 54
>PRK00194 hypothetical protein; Validated
Probab=97.25 E-value=0.00036 Score=62.98 Aligned_cols=68 Identities=25% Similarity=0.331 Sum_probs=48.8
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cC-HHHHHHHHHHhccccCeeee
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GN-LESLVNACSSVDLILGVLGW 843 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d-~~~L~~l~~~L~~I~gV~~V 843 (861)
.|.|.+.||+|++++|+++|++.|+||..++..+. .+.+.+.+.++ .. ......+...|..+.+.+++
T Consensus 5 ~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~ 74 (90)
T PRK00194 5 IITVIGKDKVGIIAGVSTVLAELNVNILDISQTIM--DGYFTMIMLVDISESKKDFAELKEELEELGKELGV 74 (90)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhh--CCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCC
Confidence 58899999999999999999999999999987653 35777777777 43 22234444445444444443
No 55
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.20 E-value=0.0022 Score=56.25 Aligned_cols=61 Identities=18% Similarity=0.211 Sum_probs=50.5
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-c-------CHHHHHHHHHHhcc
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-G-------NLESLVNACSSVDL 836 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~-------d~~~L~~l~~~L~~ 836 (861)
-|+|.+.||+|+|++|+.+|+..|+||.+..+.+. ++.+...|.|. . +.+.+.++...|.+
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~--~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~ 70 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH--NGRLACVIYVRDEETGAPIDDPIRLASIEDRLDN 70 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE--CCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHH
Confidence 37899999999999999999999999999998865 36788888886 3 34667777777765
No 56
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.17 E-value=0.002 Score=56.91 Aligned_cols=65 Identities=23% Similarity=0.402 Sum_probs=51.6
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-c-----CHHHHHHHHHHhccccC
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-G-----NLESLVNACSSVDLILG 839 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~-----d~~~L~~l~~~L~~I~g 839 (861)
-|+|.+.||+|+|++|+.+|+..|+||.++.+.+.. ++.+.-.|.|. . +.+...++...|.+.-|
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~-~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~ 72 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTP-DGRVLDLFFITDARELLHTKKRREETYDYLRAVLG 72 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECC-CCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 478999999999999999999999999999988643 36777788887 2 22566777777766544
No 57
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=97.16 E-value=0.0012 Score=56.30 Aligned_cols=55 Identities=31% Similarity=0.489 Sum_probs=46.2
Q ss_pred cCCCceEecCCCCcHHHHHHhhccccccceEEEEECCEecC----CCccCCCCCeEEEEec
Q 002985 545 TPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVS----PTHVLANAEVVEIITY 601 (861)
Q Consensus 545 tP~G~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~----l~~~L~~gd~VeIit~ 601 (861)
+=+|+.+++|+|.|..|+.-... +-...++..+||..+| .+++|++||.|||++.
T Consensus 4 ~vNG~~~~~~~~~tl~~lL~~l~--~~~~~vav~vNg~iv~r~~~~~~~l~~gD~vei~~~ 62 (66)
T PRK05659 4 QLNGEPRELPDGESVAALLAREG--LAGRRVAVEVNGEIVPRSQHASTALREGDVVEIVHA 62 (66)
T ss_pred EECCeEEEcCCCCCHHHHHHhcC--CCCCeEEEEECCeEeCHHHcCcccCCCCCEEEEEEE
Confidence 34789999999999999986653 3345667789999999 8999999999999984
No 58
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.13 E-value=0.0018 Score=53.05 Aligned_cols=53 Identities=23% Similarity=0.309 Sum_probs=43.0
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHH
Q 002985 775 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVN 829 (861)
Q Consensus 775 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~ 829 (861)
|.|...|++|.|++|+++|++.++||.++...... .+.+.+.|+++ +.+.-.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~-~~~~a~~ 53 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETR-GEFGILRLIFS-DPERAKE 53 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEEC-CHHHHHH
Confidence 46789999999999999999999999999876543 46788899888 5444333
No 59
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.11 E-value=0.003 Score=53.73 Aligned_cols=61 Identities=26% Similarity=0.300 Sum_probs=48.7
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-c-----CHHHHHHHHHHhcc
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-G-----NLESLVNACSSVDL 836 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~-----d~~~L~~l~~~L~~ 836 (861)
.|.|.+.||+|+|++|+++|++.++||.++.+.+.. +.+...|.+. . +.+.+.++..+|.+
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~--~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~ 68 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLG--ERAEDVFYVTDADGQPLDPERQEALRAALGE 68 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecC--CEEEEEEEEECCCCCcCCHHHHHHHHHHHHh
Confidence 478999999999999999999999999999987553 4677778776 2 34566667776654
No 60
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=97.10 E-value=0.0021 Score=62.07 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=61.3
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCH-HHHHHHHHHhccccCeeeeec
Q 002985 772 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNL-ESLVNACSSVDLILGVLGWST 845 (861)
Q Consensus 772 ~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~-~~L~~l~~~L~~I~gV~~Vs~ 845 (861)
...|.+...||.|+|+++-.+||+.++||..++-... -++.|.+++++. .+. .....++++|++++||..|..
T Consensus 72 i~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ip-l~g~Anvtlsi~~ssm~~~V~~ii~kl~k~e~V~kVei 146 (150)
T COG4492 72 IITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIP-LQGRANVTLSIDTSSMEKDVDKIIEKLRKVEGVEKVEI 146 (150)
T ss_pred EEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccc-cCceeeEEEEEEchhhhhhHHHHHHHHhcccceeEEEE
Confidence 4568889999999999999999999999999964322 347788888888 444 478899999999999999875
No 61
>PRK06437 hypothetical protein; Provisional
Probab=97.06 E-value=0.002 Score=55.72 Aligned_cols=60 Identities=18% Similarity=0.119 Sum_probs=49.5
Q ss_pred ceeeecCCCceEecCCCCcHHHHHHhhccccccceEEEEECCEecCCCccCCCCCeEEEEec
Q 002985 540 RVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 601 (861)
Q Consensus 540 ~I~VftP~G~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~l~~~L~~gd~VeIit~ 601 (861)
+|+|-.++-+.+++|+|.|+.|+.-.++-. ..-+++.+||+.++.++.|++||.|+|++.
T Consensus 4 ~~~v~g~~~~~~~i~~~~tv~dLL~~Lgi~--~~~vaV~vNg~iv~~~~~L~dgD~Veiv~~ 63 (67)
T PRK06437 4 MIRVKGHINKTIEIDHELTVNDIIKDLGLD--EEEYVVIVNGSPVLEDHNVKKEDDVLILEV 63 (67)
T ss_pred eEEecCCcceEEEcCCCCcHHHHHHHcCCC--CccEEEEECCEECCCceEcCCCCEEEEEec
Confidence 566665555889999999999999887654 234477799999999999999999999974
No 62
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=97.04 E-value=0.0039 Score=55.10 Aligned_cols=64 Identities=14% Similarity=0.176 Sum_probs=50.8
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecC-CcEEEEEEEEE-c-CHHHHHHHHHHhccc
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRG-RGIAVMLFHVE-G-NLESLVNACSSVDLI 837 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~-~~~a~m~ftVE-~-d~~~L~~l~~~L~~I 837 (861)
.|.++..|++|.|++|.+++++.|+||.++......+ .....+.++++ . +.+.+..+++.|+..
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~ 69 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRL 69 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHh
Confidence 4677888999999999999999999999998775432 33456666666 3 478889999998873
No 63
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.02 E-value=0.0015 Score=58.89 Aligned_cols=64 Identities=31% Similarity=0.392 Sum_probs=49.3
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cC----HHHHHHHHHHhccccC
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GN----LESLVNACSSVDLILG 839 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d----~~~L~~l~~~L~~I~g 839 (861)
.|.+.+.||+|+++.||++|++.|+||..++..+. .+.+.|.+.++ .. .+.|...+.++..--|
T Consensus 3 vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~--~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~ 71 (88)
T cd04872 3 VITVVGKDRVGIVAGVSTKLAELNVNILDISQTIM--DGYFTMIMIVDISESNLDFAELQEELEELGKELG 71 (88)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhh--CCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcC
Confidence 47899999999999999999999999999987753 35677777777 43 5566555555554434
No 64
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.00 E-value=0.0038 Score=53.10 Aligned_cols=56 Identities=20% Similarity=0.237 Sum_probs=43.7
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHH
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACS 832 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~ 832 (861)
+|.|...|++|.|++|+++|++.|+||.++.+....+ .+.+.|.. .|.+++.+++.
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~--~~~~rl~~-~~~~~~~~~L~ 58 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSE--FGILRLIV-SDPDKAKEALK 58 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCC--CCEEEEEE-CCHHHHHHHHH
Confidence 5889999999999999999999999999998754332 36666666 46666666554
No 65
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=96.99 E-value=0.0019 Score=64.61 Aligned_cols=75 Identities=15% Similarity=0.218 Sum_probs=63.9
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeeeccccC
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWSTGCSW 849 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~gV~~Vs~g~~~ 849 (861)
.|+|.+.|++|+|.++|.+|++.|.||.-.+.-..++...+.+-|.|| +.+..+.++++++...-|++|..--|+
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiE-gi~d~e~l~~~lks~d~v~ev~i~~sl 78 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIE-GIDDFEKLLERLKSFDYVIEVEIHRSL 78 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEee-CCCCHHHHHHHhhccceEEEeeecchH
Confidence 488999999999999999999999999998866544444788999999 667778889999999999999876554
No 66
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.97 E-value=0.0039 Score=55.27 Aligned_cols=61 Identities=20% Similarity=0.406 Sum_probs=48.7
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEe--EecCCcEEEEEEEEE--c----CHHHHHHHHHHhcc
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAE--IDRGRGIAVMLFHVE--G----NLESLVNACSSVDL 836 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~--~~~~~~~a~m~ftVE--~----d~~~L~~l~~~L~~ 836 (861)
-|+|.+.||+|||++|+.++++.|++|.++.+. +. + ..+.=.|-|. + |.+++..+..+|..
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~-G-erv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~ 70 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVK-G-YREVDLFIVQSDGKKIMDPKKQAALCARLRE 70 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcc-c-CEEEEEEEEeCCCCccCCHHHHHHHHHHHHH
Confidence 378999999999999999999999999999988 54 2 3455566665 2 56778888877754
No 67
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.96 E-value=0.0026 Score=54.63 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=52.4
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhcc
Q 002985 775 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDL 836 (861)
Q Consensus 775 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~ 836 (861)
+.|+.-||||-|+.+.++|+. +.||..++-... +.+.+.+.+.+| .+.+++..++.+|+.
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~-~~~~~~v~v~ie~~~~~~~~~i~~~L~~ 61 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQ-GGDEARVLVGIQVPDREDLAELKERLEA 61 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcC-CCCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence 467888999999999999999 999999976532 346788999999 999999999999986
No 68
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=96.95 E-value=0.002 Score=55.04 Aligned_cols=53 Identities=26% Similarity=0.427 Sum_probs=45.2
Q ss_pred CCceEecCCCCcHHHHHHhhccccccceEEEEECCEecCCC----ccCCCCCeEEEEec
Q 002985 547 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPT----HVLANAEVVEIITY 601 (861)
Q Consensus 547 ~G~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~l~----~~L~~gd~VeIit~ 601 (861)
+|+.+++|++.|+.|+.-.+.- -...++..|||+.++.+ ++|++||.|+|++.
T Consensus 5 Ng~~~~~~~~~tv~~ll~~l~~--~~~~i~V~vNg~~v~~~~~~~~~L~~gD~V~ii~~ 61 (65)
T cd00565 5 NGEPREVEEGATLAELLEELGL--DPRGVAVALNGEIVPRSEWASTPLQDGDRIEIVTA 61 (65)
T ss_pred CCeEEEcCCCCCHHHHHHHcCC--CCCcEEEEECCEEcCHHHcCceecCCCCEEEEEEe
Confidence 6899999999999999876643 23456778999999999 89999999999984
No 69
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=96.95 E-value=0.0049 Score=51.99 Aligned_cols=61 Identities=25% Similarity=0.337 Sum_probs=48.6
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cC-----HHHHHHHHHHhcc
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GN-----LESLVNACSSVDL 836 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d-----~~~L~~l~~~L~~ 836 (861)
.|.|.+.|++|+|++|+.+|++.++||.++.+.+.. + .....|.+. .+ .++..++-..|++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~-~-~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~ 68 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTG-E-RALDVFYVTDSDGRPLDPERIARLEEALED 68 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecC-C-EEEEEEEEECCCCCcCCHHHHHHHHHHHHh
Confidence 578999999999999999999999999999887553 3 677788887 32 2566667666654
No 70
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.92 E-value=0.006 Score=52.19 Aligned_cols=58 Identities=22% Similarity=0.350 Sum_probs=46.0
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHH
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNAC 831 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~ 831 (861)
.|.+...|++|.|++|+++|++.++||.++........+...+.|.++ .+.+++.+.+
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L 61 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDL 61 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHH
Confidence 578899999999999999999999999999765333446788889998 6665444443
No 71
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.89 E-value=0.0043 Score=51.73 Aligned_cols=57 Identities=21% Similarity=0.377 Sum_probs=43.0
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhc
Q 002985 775 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVD 835 (861)
Q Consensus 775 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~ 835 (861)
|.|...|++|.|++|+++|+++|+||.++........+...+.|.++ + +.++++.|+
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve-~---~~~~~~~L~ 58 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTE-D---IEKAIEVLQ 58 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeC-C---HHHHHHHHH
Confidence 67889999999999999999999999998764332235667777777 4 445555544
No 72
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.84 E-value=0.0079 Score=52.91 Aligned_cols=60 Identities=20% Similarity=0.290 Sum_probs=47.7
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-c------CHHHHHHHHHHhc
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-G------NLESLVNACSSVD 835 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~------d~~~L~~l~~~L~ 835 (861)
-|+|.+.||+|+|.+|+++|++.|++|.+..+.+. + ..+.=.|-|. . |.+.+..+-.+|.
T Consensus 3 viev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~-G-erv~DvFyV~d~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 3 LVKVDSARKPGILLEAVQVLTDLDLCITKAYISSD-G-GWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred EEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeec-C-CeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence 48999999999999999999999999999998865 3 4577778776 3 3455666655553
No 73
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.81 E-value=0.0067 Score=51.68 Aligned_cols=62 Identities=19% Similarity=0.116 Sum_probs=46.6
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhcc
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDL 836 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~ 836 (861)
++.|...|++|.|++|++.|++.++||.++............+.|.++ ..++..++...|++
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~-~~~~~~~~~~~L~~ 64 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK-TQEDRERAKEILKE 64 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC-CHHHHHHHHHHHHH
Confidence 588899999999999999999999999999765432112455566666 33467777777765
No 74
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=96.81 E-value=0.0067 Score=52.84 Aligned_cols=63 Identities=13% Similarity=0.166 Sum_probs=50.5
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecC-CcEEEEEEEEEc--CHHHHHHHHHHhccc
Q 002985 775 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRG-RGIAVMLFHVEG--NLESLVNACSSVDLI 837 (861)
Q Consensus 775 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~-~~~a~m~ftVE~--d~~~L~~l~~~L~~I 837 (861)
|.++..|++|.|++|.+++++.|+||.++.+....+ .+...+-++++. +..++..++..|++.
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~~ 67 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRV 67 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHh
Confidence 456678999999999999999999999998876543 345666667763 678899999999874
No 75
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.80 E-value=0.0078 Score=53.36 Aligned_cols=62 Identities=16% Similarity=0.238 Sum_probs=49.2
Q ss_pred EEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-c------CHHHHHHHHHHhcc
Q 002985 773 QWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-G------NLESLVNACSSVDL 836 (861)
Q Consensus 773 a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~------d~~~L~~l~~~L~~ 836 (861)
+-|+|.+.||||||.+|+.+|++.+.+|.+..+.+. + ..+.=.|-|. . |.+++.++-..|..
T Consensus 2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~-g-era~D~FyV~d~~g~kl~~~~~~~~l~~~L~~ 70 (75)
T cd04897 2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTD-G-DDAHQEYYIRHKDGRTLSTEGERQRVIKCLEA 70 (75)
T ss_pred EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeec-C-ceEEEEEEEEcCCCCccCCHHHHHHHHHHHHH
Confidence 348999999999999999999999999999998864 3 4566677775 2 56667777666653
No 76
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.77 E-value=0.0042 Score=54.06 Aligned_cols=46 Identities=28% Similarity=0.449 Sum_probs=40.0
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE 821 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE 821 (861)
+|.|.+.||+|+|++|+.+|++.++||.++.+.+. + +.+...|.|.
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~-~-~~~~d~f~v~ 48 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQ-G-DMAVNVFYVT 48 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecC-C-CeEEEEEEEE
Confidence 68899999999999999999999999999987644 3 4677888886
No 77
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=96.77 E-value=0.0074 Score=46.47 Aligned_cols=60 Identities=25% Similarity=0.341 Sum_probs=46.3
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhc
Q 002985 775 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVD 835 (861)
Q Consensus 775 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~ 835 (861)
|.|.+.|++|++++|+++|++.+++|..+............+.|.++ +..++.+++.+|+
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ 60 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVD-GDGDLEKLLEALE 60 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEe-chHHHHHHHHHhC
Confidence 46788999999999999999999999999876432234566777777 3337888887763
No 78
>PRK01777 hypothetical protein; Validated
Probab=96.76 E-value=0.0025 Score=59.00 Aligned_cols=54 Identities=22% Similarity=0.137 Sum_probs=42.2
Q ss_pred ceEecCCCCcHHHHHHhhcc-----ccccceEEEEECCEecCCCccCCCCCeEEEEecC
Q 002985 549 EIKNLPKGATVVDYAYMIHT-----EIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYN 602 (861)
Q Consensus 549 ~i~~lp~gaT~lDfAy~iht-----~ig~~~~~akVng~~v~l~~~L~~gd~VeIit~~ 602 (861)
.-+++|.|+|+.|..-+..- ++.-.....-|||+.+.++++|++||.|||+-.-
T Consensus 19 ~~l~vp~GtTv~dal~~sgi~~~~pei~~~~~~vgI~Gk~v~~d~~L~dGDRVeIyrPL 77 (95)
T PRK01777 19 QRLTLQEGATVEEAIRASGLLELRTDIDLAKNKVGIYSRPAKLTDVLRDGDRVEIYRPL 77 (95)
T ss_pred EEEEcCCCCcHHHHHHHcCCCccCcccccccceEEEeCeECCCCCcCCCCCEEEEecCC
Confidence 36789999999999876642 3322223566899999999999999999998754
No 79
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=96.71 E-value=0.0027 Score=77.11 Aligned_cols=65 Identities=32% Similarity=0.388 Sum_probs=60.9
Q ss_pred CCceeeecCCCceEecCCCCcHHHHHHhhccccccceEEEEECCEecCCCccCCCCCeEEEEecC
Q 002985 538 GSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYN 602 (861)
Q Consensus 538 ~~~I~VftP~G~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~l~~~L~~gd~VeIit~~ 602 (861)
++++.|..|+|..+++|+|.|+.|+|..+........++|+|||++++|++++..+..|++++..
T Consensus 3 ~~mi~i~~~~~~~~~~~~g~t~~~ia~~~~~~~~~~iv~a~vn~~l~dL~~~i~~d~~i~fv~~~ 67 (639)
T PRK12444 3 EQMIEIKFPDGSVKEFVKGITLEEIAGSISSSLKKKAVAGKVNDKLYDLRRNLEEDAEVEIITID 67 (639)
T ss_pred CCCeEEEeCCCCEEEecCCCCHHHHHHHhhhhcchheEEEEECCEEEEcCcccCCCCeEEEecCC
Confidence 45688999999999999999999999999998899999999999999999999999999999965
No 80
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=96.69 E-value=0.0048 Score=52.47 Aligned_cols=52 Identities=27% Similarity=0.388 Sum_probs=43.1
Q ss_pred CCceEecCCCCcHHHHHHhhccccccceEEEEECCEecCC----CccCCCCCeEEEEec
Q 002985 547 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSP----THVLANAEVVEIITY 601 (861)
Q Consensus 547 ~G~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~l----~~~L~~gd~VeIit~ 601 (861)
+|+.+++|.|+|+.|+.-.+... .-+..-+||+.++. ++.|++||.|||++.
T Consensus 6 Ng~~~~~~~~~tl~~ll~~l~~~---~~~~v~vN~~~v~~~~~~~~~L~~gD~vei~~~ 61 (65)
T PRK06944 6 NQQTLSLPDGATVADALAAYGAR---PPFAVAVNGDFVARTQHAARALAAGDRLDLVQP 61 (65)
T ss_pred CCEEEECCCCCcHHHHHHhhCCC---CCeEEEECCEEcCchhcccccCCCCCEEEEEee
Confidence 68999999999999987665443 23577899999987 568999999999983
No 81
>PRK07440 hypothetical protein; Provisional
Probab=96.68 E-value=0.0051 Score=53.68 Aligned_cols=54 Identities=20% Similarity=0.369 Sum_probs=46.0
Q ss_pred CCCceEecCCCCcHHHHHHhhccccccceEEEEECCEecC----CCccCCCCCeEEEEec
Q 002985 546 PRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVS----PTHVLANAEVVEIITY 601 (861)
Q Consensus 546 P~G~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~----l~~~L~~gd~VeIit~ 601 (861)
=+|+.+++|+|.|..|+--.+.- -..-+++.+||+.+| .++.|++||.|||++.
T Consensus 9 vNG~~~~~~~~~tl~~lL~~l~~--~~~~vav~~N~~iv~r~~w~~~~L~~gD~IEIv~~ 66 (70)
T PRK07440 9 VNGETRTCSSGTSLPDLLQQLGF--NPRLVAVEYNGEILHRQFWEQTQVQPGDRLEIVTI 66 (70)
T ss_pred ECCEEEEcCCCCCHHHHHHHcCC--CCCeEEEEECCEEeCHHHcCceecCCCCEEEEEEE
Confidence 36899999999999998765532 346778999999999 8889999999999985
No 82
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=96.67 E-value=0.0072 Score=66.53 Aligned_cols=68 Identities=24% Similarity=0.234 Sum_probs=54.3
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE--cC--HHHHHHHHHHhccccC
Q 002985 772 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE--GN--LESLVNACSSVDLILG 839 (861)
Q Consensus 772 ~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE--~d--~~~L~~l~~~L~~I~g 839 (861)
...|.|.+.||+|++++||++|++.++||..+++.+....+.+.|.++++ .+ .++|...+.++-.--|
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~~~~~L~~~L~~l~~~l~ 78 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGLDEDALRAGFAPIAARFG 78 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 34589999999999999999999999999999987555667888888886 33 6677666666654444
No 83
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=96.66 E-value=0.0059 Score=63.35 Aligned_cols=63 Identities=11% Similarity=0.171 Sum_probs=50.9
Q ss_pred EEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEec----CCcEEEEEEEEE--cC--HHHHHHHHHHhc
Q 002985 773 QWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDR----GRGIAVMLFHVE--GN--LESLVNACSSVD 835 (861)
Q Consensus 773 a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~----~~~~a~m~ftVE--~d--~~~L~~l~~~L~ 835 (861)
..+.|.+.||||++++||++|++.++||.++++.+.. +...+.|.|+++ .+ .++|..-+..+.
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~~~L~~~l~~l~ 166 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQDAANIEQAFKALC 166 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999999999999999988653 234688888888 55 666666555554
No 84
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.55 E-value=0.014 Score=50.77 Aligned_cols=56 Identities=16% Similarity=0.233 Sum_probs=45.8
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHH
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNA 830 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l 830 (861)
.|.|.+.||+|++++|+.+|+..+.||.++.+.+. .++.+.-.|.|. .+.+.=..+
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt-~dG~~LDtF~V~d~~~~~~~~~ 59 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFST-DDGLALDIFVVTGWKRGETAAL 59 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEc-CCCeEEEEEEEecCCccchHHH
Confidence 47889999999999999999999999999998865 457888888888 554443333
No 85
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=96.51 E-value=0.0082 Score=51.19 Aligned_cols=53 Identities=26% Similarity=0.462 Sum_probs=44.3
Q ss_pred CCceEecCCCCcHHHHHHhhccccccceEEEEECCEecCCC----ccCCCCCeEEEEec
Q 002985 547 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPT----HVLANAEVVEIITY 601 (861)
Q Consensus 547 ~G~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~l~----~~L~~gd~VeIit~ 601 (861)
+|+.+++|+|.|+.|+.-.+.-. ...+...+||+.++-+ +.|++||.|+|++.
T Consensus 4 Ng~~~~~~~~~tv~~ll~~l~~~--~~~v~v~vN~~iv~~~~~~~~~L~~gD~veii~~ 60 (64)
T TIGR01683 4 NGEPVEVEDGLTLAALLESLGLD--PRRVAVAVNGEIVPRSEWDDTILKEGDRIEIVTF 60 (64)
T ss_pred CCeEEEcCCCCcHHHHHHHcCCC--CCeEEEEECCEEcCHHHcCceecCCCCEEEEEEe
Confidence 68999999999999998776544 3666788999999743 57999999999984
No 86
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=96.45 E-value=0.0075 Score=52.14 Aligned_cols=53 Identities=21% Similarity=0.419 Sum_probs=45.0
Q ss_pred CCceEecCCC-CcHHHHHHhhccccccceEEEEECCEecCCC----ccCCCCCeEEEEec
Q 002985 547 RGEIKNLPKG-ATVVDYAYMIHTEIGNKMVAAKVNGNLVSPT----HVLANAEVVEIITY 601 (861)
Q Consensus 547 ~G~i~~lp~g-aT~lDfAy~iht~ig~~~~~akVng~~v~l~----~~L~~gd~VeIit~ 601 (861)
+|+.+++|.+ +|..|+.-.+.- -...+++-+||+.+|-+ +.|++||.|||++.
T Consensus 6 NG~~~~~~~~~~tv~~lL~~l~~--~~~~vav~vN~~iv~r~~w~~~~L~~gD~iEIv~~ 63 (67)
T PRK07696 6 NGNQIEVPESVKTVAELLTHLEL--DNKIVVVERNKDILQKDDHTDTSVFDGDQIEIVTF 63 (67)
T ss_pred CCEEEEcCCCcccHHHHHHHcCC--CCCeEEEEECCEEeCHHHcCceecCCCCEEEEEEE
Confidence 6889999999 799999766543 34567888999999999 88999999999985
No 87
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=96.41 E-value=0.009 Score=52.02 Aligned_cols=50 Identities=24% Similarity=0.294 Sum_probs=43.0
Q ss_pred eEecCCCCcHHHHHHhhccccccceEEEEECCEecCCCccCCCCCeEEEEec
Q 002985 550 IKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 601 (861)
Q Consensus 550 i~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~l~~~L~~gd~VeIit~ 601 (861)
.+++|.|.|+.|+.-.+.- -...+...+||+.++.++.|++||.|+|++.
T Consensus 17 ~~~~~~~~tv~~ll~~l~~--~~~~v~v~vNg~iv~~~~~l~~gD~Veii~~ 66 (70)
T PRK08364 17 EIEWRKGMKVADILRAVGF--NTESAIAKVNGKVALEDDPVKDGDYVEVIPV 66 (70)
T ss_pred EEEcCCCCcHHHHHHHcCC--CCccEEEEECCEECCCCcCcCCCCEEEEEcc
Confidence 6788999999999877743 3366888899999999999999999999974
No 88
>PLN02908 threonyl-tRNA synthetase
Probab=96.36 E-value=0.0058 Score=74.91 Aligned_cols=65 Identities=25% Similarity=0.311 Sum_probs=60.2
Q ss_pred CceeeecCCCceEecCC-CCcHHHHHHhhccccccceEEEEECCEecCCCccCCCCCeEEEEecCC
Q 002985 539 SRVFVFTPRGEIKNLPK-GATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNA 603 (861)
Q Consensus 539 ~~I~VftP~G~i~~lp~-gaT~lDfAy~iht~ig~~~~~akVng~~v~l~~~L~~gd~VeIit~~~ 603 (861)
++|.|..|+|.+++.|+ |+||.|+|-.|...+....+.|+|||++++|+++|+.+..|++++-..
T Consensus 50 ~~i~i~~~dg~~~~~~~~~tt~~~ia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~le~l~~~~ 115 (686)
T PLN02908 50 DPIKVTLPDGAVKDGKKWVTTPMDIAKEISKGLANSALIAQVDGVLWDMTRPLEGDCKLKLFKFDD 115 (686)
T ss_pred CceEEEeCCCceEeecCCCCCHHHHHHHhCccchhhcEEEEECCEEeecCccccCCCeeEEecccc
Confidence 47889999999999995 599999999999999999999999999999999999999999999753
No 89
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=96.29 E-value=0.013 Score=50.30 Aligned_cols=54 Identities=11% Similarity=0.183 Sum_probs=44.3
Q ss_pred CCCceEecCCCCcHHHHHHhhccccccceEEEEECCEecC----CCccCCCCCeEEEEec
Q 002985 546 PRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVS----PTHVLANAEVVEIITY 601 (861)
Q Consensus 546 P~G~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~----l~~~L~~gd~VeIit~ 601 (861)
=+|+.+++|.+.|..|+--.+.. -...++.-|||+.|| -.+.|++||.|||++.
T Consensus 5 vNg~~~~~~~~~tl~~ll~~l~~--~~~~vaVavN~~iv~r~~w~~~~L~~gD~Ieii~~ 62 (66)
T PRK08053 5 FNDQPMQCAAGQTVHELLEQLNQ--LQPGAALAINQQIIPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_pred ECCeEEEcCCCCCHHHHHHHcCC--CCCcEEEEECCEEeChHHcCccccCCCCEEEEEEE
Confidence 37899999999999998765433 235678889999999 5557999999999984
No 90
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=96.24 E-value=0.0035 Score=57.04 Aligned_cols=48 Identities=31% Similarity=0.415 Sum_probs=39.5
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE
Q 002985 772 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE 821 (861)
Q Consensus 772 ~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE 821 (861)
.+-|.|.+.||+|+.|.|+++||+.++||.+++-..-+ +...|-+-++
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~--~~ftm~~lV~ 50 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMD--GFFTMIMLVD 50 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHh--hhceeeeEEc
Confidence 34589999999999999999999999999999633222 5777777777
No 91
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=96.20 E-value=0.014 Score=50.75 Aligned_cols=52 Identities=25% Similarity=0.428 Sum_probs=45.0
Q ss_pred CceEecCCCCcHHHHHHhhccccccceEEEEECCEecC----CCccCCCCCeEEEEec
Q 002985 548 GEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVS----PTHVLANAEVVEIITY 601 (861)
Q Consensus 548 G~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~----l~~~L~~gd~VeIit~ 601 (861)
|+-.+++.+.|..|+--.+.. -..-+++.+||..|| .++.|++||.|||++.
T Consensus 9 g~~~e~~~~~tv~dLL~~l~~--~~~~vav~vNg~iVpr~~~~~~~l~~gD~ievv~~ 64 (68)
T COG2104 9 GKEVEIAEGTTVADLLAQLGL--NPEGVAVAVNGEIVPRSQWADTILKEGDRIEVVRV 64 (68)
T ss_pred CEEEEcCCCCcHHHHHHHhCC--CCceEEEEECCEEccchhhhhccccCCCEEEEEEe
Confidence 899999999999998655533 336778899999999 9999999999999984
No 92
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=96.18 E-value=0.016 Score=63.66 Aligned_cols=65 Identities=26% Similarity=0.333 Sum_probs=51.4
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-c----CHHHHHHHHHH-hccccC
Q 002985 775 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-G----NLESLVNACSS-VDLILG 839 (861)
Q Consensus 775 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~----d~~~L~~l~~~-L~~I~g 839 (861)
|.|.+.||+|++|.||+.|++.|+||..++...++..+.+.|++.++ . +.++|...++. +.+--|
T Consensus 3 itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~~~~~~~~ 73 (280)
T TIGR00655 3 LLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKSALAEKFE 73 (280)
T ss_pred EEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhC
Confidence 78999999999999999999999999999877654457788888877 3 35666666666 554444
No 93
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=95.95 E-value=0.016 Score=63.87 Aligned_cols=67 Identities=27% Similarity=0.291 Sum_probs=48.7
Q ss_pred EEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-----cCHHHHHHHHHHhccccC
Q 002985 773 QWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-----GNLESLVNACSSVDLILG 839 (861)
Q Consensus 773 a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-----~d~~~L~~l~~~L~~I~g 839 (861)
..|.|.+.||+|++++||++|++.|+||.++++......+.+.|.+.++ .+.+.|...+.+|.+=-|
T Consensus 7 ~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~~~l~ 78 (286)
T PRK06027 7 YVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALAEEFE 78 (286)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHhC
Confidence 3589999999999999999999999999999887632334566666665 234555555555554334
No 94
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=95.95 E-value=0.0097 Score=67.50 Aligned_cols=65 Identities=25% Similarity=0.358 Sum_probs=51.6
Q ss_pred cccCCceeeecCCC---ceEecCCCCcHHHHHHhhccccccceEEEEE-----------------CCE--ecCCCccCCC
Q 002985 535 DLLGSRVFVFTPRG---EIKNLPKGATVVDYAYMIHTEIGNKMVAAKV-----------------NGN--LVSPTHVLAN 592 (861)
Q Consensus 535 dl~~~~I~VftP~G---~i~~lp~gaT~lDfAy~iht~ig~~~~~akV-----------------ng~--~v~l~~~L~~ 592 (861)
+++ +-|.+||-.. +.+.+|+|+|+.|+|+.||||+++..+.|.| .|+ +..-+|.+++
T Consensus 276 ~~L-~li~fftvg~~evrawti~~GstA~~aAg~IHsD~~kgFI~AeVi~~~d~~~~g~~~~ak~~gk~rleGkdY~v~D 354 (364)
T PRK09601 276 ELL-GLITYFTAGPKEVRAWTIKKGTTAPQAAGVIHTDFEKGFIRAEVISYDDLIEYGSEAGAKEAGKVRLEGKDYIVQD 354 (364)
T ss_pred HHh-CCEEEecCCCCeEEEEEeCCCCchHHHhhcchhhHhhccEEEEEecHHHHHHcCCHHHHHHccceeccCCceEecC
Confidence 444 4677777322 6899999999999999999999999998874 132 3467899999
Q ss_pred CCeEEEEe
Q 002985 593 AEVVEIIT 600 (861)
Q Consensus 593 gd~VeIit 600 (861)
||+|.|-.
T Consensus 355 GDIi~f~f 362 (364)
T PRK09601 355 GDVMHFRF 362 (364)
T ss_pred CCEEEEEc
Confidence 99999865
No 95
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=95.94 E-value=0.022 Score=57.37 Aligned_cols=72 Identities=21% Similarity=0.327 Sum_probs=57.7
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcC---HHHHHHHHHHhccccCeeeeec
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGN---LESLVNACSSVDLILGVLGWST 845 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d---~~~L~~l~~~L~~I~gV~~Vs~ 845 (861)
.|.+...|.+|.|..|+..++..|.||.|+..-..+..+..+|++.+.+| .+|+.+-+.+|-.+.+|.+...
T Consensus 6 ilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLidV~kV~d~~~ 80 (163)
T COG0440 6 ILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLIDVLKVLDLTS 80 (163)
T ss_pred EEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHHHHhhccceeEEEcCC
Confidence 47788999999999999999999999999987655455688888888866 6666666666666666666654
No 96
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=95.78 E-value=0.026 Score=48.17 Aligned_cols=52 Identities=25% Similarity=0.339 Sum_probs=41.9
Q ss_pred CCceEecCCCCcHHHHHHhhccccccceEEEEECCEecCC----CccCCCCCeEEEEec
Q 002985 547 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSP----THVLANAEVVEIITY 601 (861)
Q Consensus 547 ~G~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~l----~~~L~~gd~VeIit~ 601 (861)
+|+.+++ .+.|+.|+--.+. +....+++-|||+.+|. +++|++||.|||++.
T Consensus 6 Ng~~~~~-~~~tl~~Ll~~l~--~~~~~vavavN~~iv~~~~~~~~~L~dgD~Ieiv~~ 61 (65)
T PRK06488 6 NGETLQT-EATTLALLLAELD--YEGNWLATAVNGELVHKEARAQFVLHEGDRIEILSP 61 (65)
T ss_pred CCeEEEc-CcCcHHHHHHHcC--CCCCeEEEEECCEEcCHHHcCccccCCCCEEEEEEe
Confidence 6788999 4579999865553 23356788899999998 789999999999984
No 97
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=95.78 E-value=0.036 Score=63.08 Aligned_cols=67 Identities=16% Similarity=0.149 Sum_probs=56.8
Q ss_pred eeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEe---EecCCcEEEEEEEEE-cCHHHHHHHHHHhccc
Q 002985 771 SIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAE---IDRGRGIAVMLFHVE-GNLESLVNACSSVDLI 837 (861)
Q Consensus 771 ~~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~---~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I 837 (861)
....|.|+.-||+|.|++|++.|++.++||.++... .+...+.+.+.|.|| .+.+++..++++|+..
T Consensus 304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~~~~~~~i~~~L~~~ 374 (380)
T TIGR01127 304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRGKEHLDEILKILRDM 374 (380)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 356799999999999999999999999999999654 111246788999999 8899999999999874
No 98
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.77 E-value=0.048 Score=49.99 Aligned_cols=68 Identities=10% Similarity=0.085 Sum_probs=53.9
Q ss_pred EEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecC-CcEEEEEEEEE-cCHHHHHHHHHHhccccCe
Q 002985 773 QWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRG-RGIAVMLFHVE-GNLESLVNACSSVDLILGV 840 (861)
Q Consensus 773 a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~-~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV 840 (861)
+.|.+...|++|.|.+|.+++++.|+||+.+.....+. ...+.+-+.++ ++-+.+..++..|++.-||
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~~~~~~ 84 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLRNDIGA 84 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHHHHhCC
Confidence 45777779999999999999999999999999876532 23467777777 4457888888888885544
No 99
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=95.69 E-value=0.052 Score=47.56 Aligned_cols=64 Identities=14% Similarity=0.104 Sum_probs=50.1
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecC-CcEEEEEEEEEcCHHHHHHHHHHhccc
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRG-RGIAVMLFHVEGNLESLVNACSSVDLI 837 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~-~~~a~m~ftVE~d~~~L~~l~~~L~~I 837 (861)
.|.+...|++|.|++|.+++++.|+|++.+.....++ ...+.+-++++.+.+.+..++..|++.
T Consensus 2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~~ 66 (74)
T cd04904 2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRRV 66 (74)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHHh
Confidence 3566778999999999999999999999999876543 234566666665556788888888764
No 100
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.64 E-value=0.047 Score=49.14 Aligned_cols=60 Identities=15% Similarity=0.138 Sum_probs=49.5
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cC-HHHHHHHHHHhcc
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GN-LESLVNACSSVDL 836 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d-~~~L~~l~~~L~~ 836 (861)
-|.|+.-||||-|++++++|+ +.||..+.-... ..+.+.+.+.+| .+ .+++..++..|++
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~-~~~~~~v~i~ie~~~~~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYA-DEKDAHIFVGVSVANGAEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEcc-CCCeeEEEEEEEeCCcHHHHHHHHHHHHH
Confidence 377888999999999999999 778887765432 225678888899 88 9999999999987
No 101
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.61 E-value=0.025 Score=65.36 Aligned_cols=68 Identities=19% Similarity=0.333 Sum_probs=55.8
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeeec
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWST 845 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~gV~~Vs~ 845 (861)
.|.|.-.|++|+++.|+++|++.++||.++..... + +.+.|.|.++... -..++.+|++++||+.|..
T Consensus 340 rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~-~-~~A~~iie~D~~~--~~~~~~~i~~i~~v~~v~~ 407 (409)
T PRK11790 340 RLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTD-G-EIGYVVIDVDADY--AEEALDALKAIPGTIRARL 407 (409)
T ss_pred eEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccC-C-CEEEEEEEeCCCC--cHHHHHHHHcCCCeEEEEE
Confidence 58888999999999999999999999999877532 3 6888888888322 2378888999999998863
No 102
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=95.53 E-value=0.021 Score=59.37 Aligned_cols=68 Identities=13% Similarity=0.149 Sum_probs=49.6
Q ss_pred EEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE---cCHHHHHHHHHHhccccCeee
Q 002985 773 QWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE---GNLESLVNACSSVDLILGVLG 842 (861)
Q Consensus 773 a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE---~d~~~L~~l~~~L~~I~gV~~ 842 (861)
.-|.|.+.||+|+++.||.+|++.|+||...++..- .+.+.|.+.|+ ...+.|...+..+.+..|+.-
T Consensus 9 lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~l--gg~Fa~i~lvs~~~~~~~~le~~L~~l~~~~~L~i 79 (190)
T PRK11589 9 LVITALGADRPGIVNTITRHVSSCGCNIEDSRLAML--GEEFTFIMLLSGSWNAITLIESTLPLKGAELDLLI 79 (190)
T ss_pred EEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhh--CCceEEEEEEeCChhHHHHHHHHHHhhhhhcCeEE
Confidence 348999999999999999999999999999987643 24566666667 344555555555554445543
No 103
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.52 E-value=0.071 Score=47.06 Aligned_cols=63 Identities=8% Similarity=0.066 Sum_probs=50.6
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecC-CcEEEEEEEEEcCHHHHHHHHHHhccc
Q 002985 775 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRG-RGIAVMLFHVEGNLESLVNACSSVDLI 837 (861)
Q Consensus 775 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~-~~~a~m~ftVE~d~~~L~~l~~~L~~I 837 (861)
|.+...|++|.|++|.+++++.|+||..+.....+. ...+.+-++++.+.+.+..+++.|++.
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~~~i~~~l~~l~~~ 66 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQRRLDELVQLLKRE 66 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCHHHHHHHHHHHHHh
Confidence 556668999999999999999999999999886533 234566667776667899999998874
No 104
>PRK08198 threonine dehydratase; Provisional
Probab=95.50 E-value=0.055 Score=62.17 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=57.5
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEe---cCCcEEEEEEEEE-cCHHHHHHHHHHhccc
Q 002985 772 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEID---RGRGIAVMLFHVE-GNLESLVNACSSVDLI 837 (861)
Q Consensus 772 ~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~---~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I 837 (861)
...|.|+..|+||.|+++.++|++.|+||..++.... ...+.+.+.++|| .+.+++..++++|++.
T Consensus 327 ~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~~~~~l~~~L~~~ 396 (404)
T PRK08198 327 YLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPEHIEEILDALRDA 396 (404)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 5679999999999999999999999999999986532 1246799999999 9999999999999874
No 105
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=95.48 E-value=0.025 Score=63.31 Aligned_cols=73 Identities=22% Similarity=0.281 Sum_probs=60.1
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeeeccccCCC
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWSTGCSWPS 851 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~Vs~g~~~~~ 851 (861)
+|.|.|.||-|+..++-..+...+||+..+.+.. ...+-+..- -+.+.++.+|.+|+.|+||.+|.+=--.|+
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid~-----~~~IYln~p~l~~~~fs~L~aei~~I~GV~~vr~V~~mPs 75 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDP-----IGRIYLNFPELEFESFSSLMAEIRRIPGVTDVRTVPWMPS 75 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeecC-----CCeEEEeccccCHHHHHHHHHHHhcCCCccceeeecCCcc
Confidence 5899999999999999999999999999998842 123334444 578999999999999999999988654443
No 106
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=95.39 E-value=0.012 Score=53.25 Aligned_cols=58 Identities=26% Similarity=0.278 Sum_probs=31.7
Q ss_pred cCCCc---eEecCCCCcHHHHHH-----hhccccccceEEEEECCEecCCCccCCCCCeEEEEecC
Q 002985 545 TPRGE---IKNLPKGATVVDYAY-----MIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYN 602 (861)
Q Consensus 545 tP~G~---i~~lp~gaT~lDfAy-----~iht~ig~~~~~akVng~~v~l~~~L~~gd~VeIit~~ 602 (861)
+|+.. -++||+|+|+.|.-- ..++++.-.....-|=|+.++++++|++||.|||+---
T Consensus 9 ~p~~q~~~~l~vp~GtTv~~Ai~~Sgi~~~~p~idl~~~~vGIfGk~~~~d~~L~~GDRVEIYRPL 74 (84)
T PF03658_consen 9 LPERQVILTLEVPEGTTVAQAIEASGILEQFPEIDLEKNKVGIFGKLVKLDTVLRDGDRVEIYRPL 74 (84)
T ss_dssp ETTCEEEEEEEEETT-BHHHHHHHHTHHHH-TT--TTTSEEEEEE-S--TT-B--TT-EEEEE-S-
T ss_pred CCCeEEEEEEECCCcCcHHHHHHHcCchhhCcccCcccceeeeeeeEcCCCCcCCCCCEEEEeccC
Confidence 45542 578999999999643 34566543333334559999999999999999998643
No 107
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=95.39 E-value=0.03 Score=49.86 Aligned_cols=54 Identities=17% Similarity=0.276 Sum_probs=42.9
Q ss_pred CCceEecCCCCcHHHHHHhh---cccccc--ceEEEEECCEecCCCccCCCCCeEEEEe
Q 002985 547 RGEIKNLPKGATVVDYAYMI---HTEIGN--KMVAAKVNGNLVSPTHVLANAEVVEIIT 600 (861)
Q Consensus 547 ~G~i~~lp~gaT~lDfAy~i---ht~ig~--~~~~akVng~~v~l~~~L~~gd~VeIit 600 (861)
++..+++|.|+|+-|+.-.+ |+.+.. ..+..-|||+.++.+++|++||.|+|+.
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~~~l~dgDeVai~P 77 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTESAALKDGDELAIIP 77 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCCcCcCCCCEEEEeC
Confidence 34678899999998886555 444443 3445779999999999999999999986
No 108
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=95.37 E-value=0.046 Score=60.34 Aligned_cols=73 Identities=19% Similarity=0.264 Sum_probs=52.5
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE------cCHHHHHHHHHHhccccCeeeeeccc
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE------GNLESLVNACSSVDLILGVLGWSTGC 847 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE------~d~~~L~~l~~~L~~I~gV~~Vs~g~ 847 (861)
-|.|.+.||+|++|.||++|++.|+||..++..++...+.+.|.+.++ -+.++|...+..+.+--|+ +|++-+
T Consensus 11 iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~~~l~l-~~~i~~ 89 (289)
T PRK13010 11 VLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQPVAEKFDM-QWAIHP 89 (289)
T ss_pred EEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHhCC-eEEEec
Confidence 589999999999999999999999999999875322233444544433 2567888888777766664 344433
No 109
>PRK06382 threonine dehydratase; Provisional
Probab=95.29 E-value=0.066 Score=61.72 Aligned_cols=67 Identities=16% Similarity=0.202 Sum_probs=56.2
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeE---ecCCcEEEEEEEEE-cCHHHHHHHHHHhcccc
Q 002985 772 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEI---DRGRGIAVMLFHVE-GNLESLVNACSSVDLIL 838 (861)
Q Consensus 772 ~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~---~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~ 838 (861)
...|.|...|++|.|++|+++|++.++||.++.... ....+...+.|+|| .+.++...++.+|+.-.
T Consensus 330 ~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~~~~~~v~~~L~~~G 400 (406)
T PRK06382 330 LVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQDHLDRILNALREMG 400 (406)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCHHHHHHHHHHHHHCC
Confidence 567999999999999999999999999999987641 22346788999999 88899999999997643
No 110
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.28 E-value=0.032 Score=66.37 Aligned_cols=72 Identities=19% Similarity=0.246 Sum_probs=58.7
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeeeccccCC
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWSTGCSWP 850 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~Vs~g~~~~ 850 (861)
.|+|.|.||-||..||..+++..++|+.++.+... +. +-+... -+.+.+..+|..|+.|+||.+|..--..|
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~ 74 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPI---GR--IYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPFMP 74 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCC---Ce--EEEeCCCcChhhHHHHHHHHhcCCCccchhhhccCh
Confidence 58999999999999999999999999999998522 32 444444 56778899999999999999997644333
No 111
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.89 E-value=0.16 Score=48.69 Aligned_cols=78 Identities=12% Similarity=0.008 Sum_probs=58.3
Q ss_pred cccCCCCCce--eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecC-CcEEEEEEEEEcCHHHHHHHHHHhcccc
Q 002985 762 ATWHNLEGHS--IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRG-RGIAVMLFHVEGNLESLVNACSSVDLIL 838 (861)
Q Consensus 762 V~W~~~~~~~--~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~-~~~a~m~ftVE~d~~~L~~l~~~L~~I~ 838 (861)
+.|....... .+.|.+...|++|.|++|.+.++..||||+.+...+.+. ...+.+-+.++.+.+++..++..|+..-
T Consensus 29 ~~~~~~~~~~~~ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~~~~~~aL~~L~~~~ 108 (115)
T cd04930 29 VFEEKEGKAVPQKATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHRSDLLQLISSLRQVA 108 (115)
T ss_pred cccccccccccccEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCHHHHHHHHHHHHHhc
Confidence 3565433221 356888889999999999999999999999999876532 3457777788855667888999888743
Q ss_pred C
Q 002985 839 G 839 (861)
Q Consensus 839 g 839 (861)
.
T Consensus 109 ~ 109 (115)
T cd04930 109 E 109 (115)
T ss_pred C
Confidence 3
No 112
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=94.68 E-value=0.072 Score=47.98 Aligned_cols=49 Identities=31% Similarity=0.316 Sum_probs=42.6
Q ss_pred eEecCCCCcHHHHHHhh---ccccccceEEEEECCEecCCCccCCCCCeEEEEecC
Q 002985 550 IKNLPKGATVVDYAYMI---HTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYN 602 (861)
Q Consensus 550 i~~lp~gaT~lDfAy~i---ht~ig~~~~~akVng~~v~l~~~L~~gd~VeIit~~ 602 (861)
...++.++|+-|..-++ ||++|- ..|||+.+++++.+++||.|.|....
T Consensus 26 ~~~~~~~~tvkd~IEsLGVP~tEV~~----i~vNG~~v~~~~~~~~Gd~v~V~P~~ 77 (81)
T PF14451_consen 26 THPFDGGATVKDVIESLGVPHTEVGL----ILVNGRPVDFDYRLKDGDRVAVYPVF 77 (81)
T ss_pred EEecCCCCcHHHHHHHcCCChHHeEE----EEECCEECCCcccCCCCCEEEEEecc
Confidence 46889999999998887 888874 56999999999999999999998643
No 113
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=94.63 E-value=0.076 Score=48.13 Aligned_cols=55 Identities=7% Similarity=0.166 Sum_probs=45.3
Q ss_pred cCCCceEecCCCCcHHHHHHhhccccccceEEEEECCEecCCCc----cCCCCCeEEEEec
Q 002985 545 TPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTH----VLANAEVVEIITY 601 (861)
Q Consensus 545 tP~G~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~l~~----~L~~gd~VeIit~ 601 (861)
+=+|+.++++.+.|..|+--.. ++-..-++.-+||..||-.. .|++||.|||++.
T Consensus 22 ~VNG~~~~~~~~~tl~~LL~~l--~~~~~~vAVevNg~iVpr~~w~~t~L~egD~IEIv~~ 80 (84)
T PRK06083 22 SINDQSIQVDISSSLAQIIAQL--SLPELGCVFAINNQVVPRSEWQSTVLSSGDAISLFQA 80 (84)
T ss_pred EECCeEEEcCCCCcHHHHHHHc--CCCCceEEEEECCEEeCHHHcCcccCCCCCEEEEEEE
Confidence 3478999999999999987655 34556778889999999754 6999999999985
No 114
>PRK08526 threonine dehydratase; Provisional
Probab=94.53 E-value=0.12 Score=59.56 Aligned_cols=66 Identities=15% Similarity=0.094 Sum_probs=56.7
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEec---CCcEEEEEEEEE-cCHHHHHHHHHHhccc
Q 002985 772 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDR---GRGIAVMLFHVE-GNLESLVNACSSVDLI 837 (861)
Q Consensus 772 ~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~---~~~~a~m~ftVE-~d~~~L~~l~~~L~~I 837 (861)
...|.|+.-||||.|++++++|++.+.||..+.-.... ..+.+.+.+.|| .+.+|+.++++.|+.-
T Consensus 326 ~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~~ 395 (403)
T PRK08526 326 KMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKILTEK 395 (403)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 56799999999999999999999999999999764321 125688899999 9999999999999763
No 115
>PRK03059 PII uridylyl-transferase; Provisional
Probab=94.51 E-value=0.11 Score=65.58 Aligned_cols=76 Identities=14% Similarity=0.090 Sum_probs=59.4
Q ss_pred cccCCCCCceeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE----cCHHHHHHHHHHhccc
Q 002985 762 ATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE----GNLESLVNACSSVDLI 837 (861)
Q Consensus 762 V~W~~~~~~~~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE----~d~~~L~~l~~~L~~I 837 (861)
|.+........+.|.|.+.||+|||++|+.+|+..++||.++.+.|. ++.+.-.|.|. .+.+++.++...|.+.
T Consensus 776 V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~--~~~v~DvF~V~~~~~~~~~~~~~l~~~L~~~ 853 (856)
T PRK03059 776 VDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTL--GERVEDTFLIDGSGLSDNRLQIQLETELLDA 853 (856)
T ss_pred EEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeec--CCEEEEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 45654444346689999999999999999999999999999998865 36677788885 2457788888887664
Q ss_pred cC
Q 002985 838 LG 839 (861)
Q Consensus 838 ~g 839 (861)
-+
T Consensus 854 L~ 855 (856)
T PRK03059 854 LA 855 (856)
T ss_pred hc
Confidence 43
No 116
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=94.50 E-value=0.079 Score=46.48 Aligned_cols=52 Identities=31% Similarity=0.321 Sum_probs=42.4
Q ss_pred ceEecCCCCcHHHHHHhhcccc------ccceEEEEECCEecCCCccCCCCCeEEEEe
Q 002985 549 EIKNLPKGATVVDYAYMIHTEI------GNKMVAAKVNGNLVSPTHVLANAEVVEIIT 600 (861)
Q Consensus 549 ~i~~lp~gaT~lDfAy~iht~i------g~~~~~akVng~~v~l~~~L~~gd~VeIit 600 (861)
..+++|+|+|+.|+--.+-.+. ....+.+-|||+.++.+++|++||.|.|++
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~~~~l~~gD~v~i~p 75 (80)
T cd00754 18 EELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRLDTPLKDGDEVAIIP 75 (80)
T ss_pred EEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCCCcccCCCCEEEEeC
Confidence 4668899999999876664332 245668889999999999999999999987
No 117
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=94.43 E-value=0.086 Score=45.22 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=43.9
Q ss_pred CCCceEecCCCCcHHHHHHhhccccccceEEEEECCEecCCCc---cCCCCCeEEEEec
Q 002985 546 PRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTH---VLANAEVVEIITY 601 (861)
Q Consensus 546 P~G~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~l~~---~L~~gd~VeIit~ 601 (861)
=+|+.+++|++.|..|+.-...- -..-++.-+||..+|-.. .|++||.|||++.
T Consensus 5 vNG~~~~~~~~~tl~~ll~~l~~--~~~~vav~~N~~iv~r~~~~~~L~~gD~ieIv~~ 61 (65)
T PRK05863 5 VNEEQVEVDEQTTVAALLDSLGF--PEKGIAVAVDWSVLPRSDWATKLRDGARLEVVTA 61 (65)
T ss_pred ECCEEEEcCCCCcHHHHHHHcCC--CCCcEEEEECCcCcChhHhhhhcCCCCEEEEEee
Confidence 37899999999999999876543 345778889999777543 5999999999984
No 118
>PRK05007 PII uridylyl-transferase; Provisional
Probab=94.35 E-value=0.14 Score=64.85 Aligned_cols=72 Identities=14% Similarity=0.247 Sum_probs=55.1
Q ss_pred cccCCCCCceeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cC-----HHHHHHHHHHhc
Q 002985 762 ATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GN-----LESLVNACSSVD 835 (861)
Q Consensus 762 V~W~~~~~~~~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d-----~~~L~~l~~~L~ 835 (861)
|.|+++.+..++-|+|.+.||+|||++|+.+|++.|++|.++.+.|. + ..+.=.|-|. .+ .+.+..+-.+|.
T Consensus 798 V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~-g-era~DvFyV~~~~g~~l~~~~~~~l~~~L~ 875 (884)
T PRK05007 798 VSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTI-G-ERVEDLFILATADRRALNEELQQELRQRLT 875 (884)
T ss_pred EEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEecc-C-ceEEEEEEEEcCCCCcCCHHHHHHHHHHHH
Confidence 67876655567789999999999999999999999999999999875 3 4566677776 22 344555544443
No 119
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=94.32 E-value=0.053 Score=54.98 Aligned_cols=37 Identities=27% Similarity=0.385 Sum_probs=34.4
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEe
Q 002985 772 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEID 808 (861)
Q Consensus 772 ~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~ 808 (861)
+.+++|++.||+|++.++|+.++..|+||.++.+++.
T Consensus 92 ~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~ 128 (176)
T COG2716 92 PVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTY 128 (176)
T ss_pred eEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeee
Confidence 5689999999999999999999999999999988764
No 120
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=94.31 E-value=0.063 Score=64.00 Aligned_cols=68 Identities=22% Similarity=0.351 Sum_probs=56.2
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeee
Q 002985 775 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWS 844 (861)
Q Consensus 775 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~gV~~Vs 844 (861)
|.+.-.||+|+++.|+++|++.++||.+++.......+.+.|.+.+...+. ..++.+|+++++|.+|.
T Consensus 454 li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~~v~--~~~l~~i~~~~~i~~v~ 521 (525)
T TIGR01327 454 LIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQPVP--DEVLEEIKAIPDILSVF 521 (525)
T ss_pred EEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCCCCC--HHHHHHHhcCCCccEEE
Confidence 566779999999999999999999999998764444567888898884433 67889999999998875
No 121
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=94.31 E-value=0.071 Score=63.54 Aligned_cols=68 Identities=21% Similarity=0.329 Sum_probs=56.2
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeee
Q 002985 775 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWS 844 (861)
Q Consensus 775 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~gV~~Vs 844 (861)
|-+.-.|++|+++.|+++|++.++||.++++....+.+.+.|.|.+...+. ..++.+|+++++|.+|.
T Consensus 455 li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~~v~--~~~l~~i~~~~~i~~~~ 522 (526)
T PRK13581 455 LIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDPVP--EEVLEELRALPGILSAK 522 (526)
T ss_pred EEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCCCCC--HHHHHHHhcCCCcceEE
Confidence 566779999999999999999999999998764444577888888884433 67889999999998875
No 122
>PRK05092 PII uridylyl-transferase; Provisional
Probab=94.29 E-value=0.11 Score=65.88 Aligned_cols=74 Identities=24% Similarity=0.218 Sum_probs=56.3
Q ss_pred cccCCCCCceeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-------cCHHHHHHHHHHh
Q 002985 762 ATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-------GNLESLVNACSSV 834 (861)
Q Consensus 762 V~W~~~~~~~~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-------~d~~~L~~l~~~L 834 (861)
|.+++..+...+.|.|.+.||+|+|++|+.+|++.|+||.++.+.+. + +.+.-.|.|. .+.+.+..+...|
T Consensus 833 V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~-~-~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L 910 (931)
T PRK05092 833 VTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATY-G-ERAVDVFYVTDLFGLKITNEARQAAIRRAL 910 (931)
T ss_pred EEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEc-C-CEEEEEEEEeCCCCCcCCCHHHHHHHHHHH
Confidence 45655444445789999999999999999999999999999999865 3 5677777775 1344666677766
Q ss_pred ccc
Q 002985 835 DLI 837 (861)
Q Consensus 835 ~~I 837 (861)
..+
T Consensus 911 ~~~ 913 (931)
T PRK05092 911 LAA 913 (931)
T ss_pred HHH
Confidence 544
No 123
>PRK03381 PII uridylyl-transferase; Provisional
Probab=94.11 E-value=0.096 Score=65.27 Aligned_cols=58 Identities=22% Similarity=0.275 Sum_probs=48.9
Q ss_pred cccCCCCCceeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE
Q 002985 762 ATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE 821 (861)
Q Consensus 762 V~W~~~~~~~~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE 821 (861)
+.|.+..+...+.|.|.+.||+|||++|+.+|++.++||.++.+.+. ++.+.-.|.|.
T Consensus 697 v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~--g~~a~D~F~V~ 754 (774)
T PRK03381 697 VLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATL--GADVVDVFYVT 754 (774)
T ss_pred EEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeec--CCeEEEEEEEE
Confidence 46765544445679999999999999999999999999999999865 36788899998
No 124
>PRK06349 homoserine dehydrogenase; Provisional
Probab=94.05 E-value=0.15 Score=59.18 Aligned_cols=69 Identities=20% Similarity=0.326 Sum_probs=58.3
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeee
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGW 843 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~V 843 (861)
.|++.+.|++|+|+.|+.++++.++||.++.-... ..+.+.+.+.++ .+..++..++.+|++++.|.+.
T Consensus 350 ylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~-~~~~~~ivivT~~~~e~~l~~~i~~L~~l~~V~~~ 419 (426)
T PRK06349 350 YLRLLVADKPGVLAKIAAIFAENGISIESILQKGA-GGEGAEIVIVTHETSEAALRAALAAIEALDVVLGI 419 (426)
T ss_pred EEEEEecCCcchHHHHHHHHhhcCccEEEEEeccC-CCCceeEEEEEEeCCHHHHHHHHHHHhcCcccccc
Confidence 58888999999999999999999999999865432 235677778778 7889999999999999998764
No 125
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=93.86 E-value=0.16 Score=64.09 Aligned_cols=72 Identities=22% Similarity=0.176 Sum_probs=53.1
Q ss_pred cccCCCCCceeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-c-----CHHHHHHHHHHhc
Q 002985 762 ATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-G-----NLESLVNACSSVD 835 (861)
Q Consensus 762 V~W~~~~~~~~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~-----d~~~L~~l~~~L~ 835 (861)
|.+++..+...+.|.|.+.||||||++|++++++.|+||.++.+.+.. ..+.-.|.|. . +-++...+-.+|.
T Consensus 769 V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~--~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~ 846 (850)
T TIGR01693 769 VTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFG--EKAEDVFYVTDLFGLKLTDEEEQRLLEVLA 846 (850)
T ss_pred EEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecC--ccceeEEEEECCCCCCCCHHHHHHHHHHHH
Confidence 677666555567899999999999999999999999999999998753 3444455554 1 1245555555553
No 126
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=93.83 E-value=0.092 Score=47.35 Aligned_cols=66 Identities=24% Similarity=0.207 Sum_probs=47.8
Q ss_pred EEEEEec-cccHHHHHHHHHHhCCcceeeeEEeEec-------CCcEEEEEEEEE---cCHHHHHHHHHHhccccCe
Q 002985 775 FSVVCID-RRGIMADVTTALATVGVTICSCVAEIDR-------GRGIAVMLFHVE---GNLESLVNACSSVDLILGV 840 (861)
Q Consensus 775 I~V~a~D-R~GlLadItsvIa~~~iNI~sv~~~~~~-------~~~~a~m~ftVE---~d~~~L~~l~~~L~~I~gV 840 (861)
+.|.+.| +.|+++.||++||+.|+||..++..+.+ ....+.|.|.|+ .|.+.|..-+..+.+=-||
T Consensus 2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~lr~~L~~la~elgv 78 (84)
T cd04871 2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQPADLEALRAALLELASELNV 78 (84)
T ss_pred EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCCCCCHHHHHHHHHHHhcccCc
Confidence 5678888 9999999999999999999888754221 123578888888 3555666666665555453
No 127
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=93.74 E-value=0.2 Score=63.35 Aligned_cols=64 Identities=8% Similarity=0.135 Sum_probs=51.6
Q ss_pred eeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-c------CHHHHHHHHHHhcc
Q 002985 771 SIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-G------NLESLVNACSSVDL 836 (861)
Q Consensus 771 ~~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~------d~~~L~~l~~~L~~ 836 (861)
..+.|.|.+.||+|||++|+.+|+..|+||.++.+.|. ++.+.-.|.|. . +.+.+.++..+|.+
T Consensus 813 ~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~--g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~ 883 (895)
T PRK00275 813 PVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATL--GERVEDVFFITDADNQPLSDPQLCSRLQDAICE 883 (895)
T ss_pred CeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEec--CCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHH
Confidence 35679999999999999999999999999999999866 36777788886 2 23466666666654
No 128
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=93.60 E-value=0.18 Score=53.04 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=42.0
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE
Q 002985 775 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE 821 (861)
Q Consensus 775 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE 821 (861)
|.+.-.||||+++.|+++|++++|||..+++......+.|.|-+.++
T Consensus 151 L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD 197 (208)
T TIGR00719 151 ILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEID 197 (208)
T ss_pred EEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeC
Confidence 67788999999999999999999999999987554557899999998
No 129
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=93.36 E-value=0.13 Score=55.03 Aligned_cols=72 Identities=15% Similarity=0.236 Sum_probs=59.0
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeeec
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWST 845 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~gV~~Vs~ 845 (861)
.|.+-+.|.+|+|..|+-++|..|-||.|+.+--+++...++|++.+.+.-.=|+++..+|.++=+|+.|-.
T Consensus 79 vinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~VveQa~rQiedlVnV~aVlD 150 (309)
T KOG2663|consen 79 VINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDGVVEQARRQIEDLVNVYAVLD 150 (309)
T ss_pred eEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccHHHHHHHHHHHHHhhhhheeee
Confidence 488889999999999999999999999999775555557788999998555667778888887777776643
No 130
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=93.32 E-value=0.13 Score=44.78 Aligned_cols=53 Identities=28% Similarity=0.379 Sum_probs=44.9
Q ss_pred ceEecCCCCcHHHHHHhhcccccc----ceEEEEECCEecCC---CccCCCCCeEEEEec
Q 002985 549 EIKNLPKGATVVDYAYMIHTEIGN----KMVAAKVNGNLVSP---THVLANAEVVEIITY 601 (861)
Q Consensus 549 ~i~~lp~gaT~lDfAy~iht~ig~----~~~~akVng~~v~l---~~~L~~gd~VeIit~ 601 (861)
....+|.++|+.|+--.+-.+.+. ..+...|||+.++. +++|++||.|.|++.
T Consensus 14 ~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~~~~~~~l~~gD~V~i~pp 73 (77)
T PF02597_consen 14 EEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPDDGLDTPLKDGDEVAILPP 73 (77)
T ss_dssp EEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGGGTTTSBEETTEEEEEEES
T ss_pred eEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCCccCCcCcCCCCEEEEECC
Confidence 577889999999998888666642 55677899999999 999999999999973
No 131
>PRK03381 PII uridylyl-transferase; Provisional
Probab=93.20 E-value=0.26 Score=61.51 Aligned_cols=72 Identities=19% Similarity=0.209 Sum_probs=53.9
Q ss_pred cccCCCCCceeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-c--CHHHHHHHHHHhcc
Q 002985 762 ATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-G--NLESLVNACSSVDL 836 (861)
Q Consensus 762 V~W~~~~~~~~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~--d~~~L~~l~~~L~~ 836 (861)
|.|.... ...+.|.|.+.||+|++++|+.+|+..|.||.+.++.+ .++.+...|.|. . ......++...|.+
T Consensus 590 v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t--~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~ 664 (774)
T PRK03381 590 VEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS--HDGVAVLEFVVSPRFGSPPDAALLRQDLRR 664 (774)
T ss_pred EEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe--cCCEEEEEEEEECCCCCcchHHHHHHHHHH
Confidence 5665444 33567999999999999999999999999999999886 457788888888 2 21223555555543
No 132
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=93.11 E-value=0.19 Score=63.33 Aligned_cols=59 Identities=17% Similarity=0.266 Sum_probs=49.7
Q ss_pred ccccCCCCCceeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE
Q 002985 761 IATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE 821 (861)
Q Consensus 761 ~V~W~~~~~~~~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE 821 (861)
.|.|+++.+..++-|+|.+.||+|||++|+++|++.|++|.++.+.|. + ..+.=.|-|+
T Consensus 772 ~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~-g-erv~D~Fyv~ 830 (854)
T PRK01759 772 EVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTI-G-EKAEDFFILT 830 (854)
T ss_pred EEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEccc-C-ceEEEEEEEE
Confidence 478887666667889999999999999999999999999999998865 3 4566677776
No 133
>PRK14707 hypothetical protein; Provisional
Probab=93.10 E-value=0.41 Score=63.32 Aligned_cols=153 Identities=14% Similarity=0.129 Sum_probs=104.4
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccceeEEEEeecChhHHHHHHHh----cCCCc--
Q 002985 297 FMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTVKTEIRSVCKEPYSIYKAVLK----SRGSI-- 370 (861)
Q Consensus 297 f~~l~p~~y~~i~~~l~~~~~~~~~~i~~~~~~L~~~L~~~~~l~~~~i~~~V~~R~K~~ySI~~Km~r----k~~~~-- 370 (861)
|+.+-|+.-....+.+...-..-|..|...+..+-+.+ .+ .. .....|.|+.-|+.+|+.. ++.++
T Consensus 2263 ~~~~~p~~~~~~a~~Ll~~A~~~Ep~ITp~Lr~ia~~~--~G--~L----~GLe~RLKS~~SLkrKL~~~~~~~~~slee 2334 (2710)
T PRK14707 2263 LRDVQPQDIALKAQTLLGRARQMEPQVTDMLQNIAARH--GG--QL----AGTQHQLKSYSSLQEKLKQRVALKKQSLEE 2334 (2710)
T ss_pred hccCCHHHHHHHHHHHHHHHHhccccccHHHHHHHHHh--cC--cc----cchHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 66677888777777776665555555554433322221 11 11 1224489999999999963 45555
Q ss_pred --ccccceeeEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhc-cccCCCccccccccCCCCCCccceEEEEeccCCccce
Q 002985 371 --NEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHG-IWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMF 447 (861)
Q Consensus 371 --~ei~Dl~giRIIv~~~~~~~~~~~~~~~~dCY~vlg~vh~-~~~pip~~~kDyIa~PK~NGYqSLHt~V~~~~~~~~~ 447 (861)
..|+|.+-.=||+++. .|+..+..+++.+.. .|+-+ +++++-. .+.++|..+++++..++ |.
T Consensus 2335 Aaa~VnDALRYTVVLpp~---------~Fva~~r~Il~aL~~qGy~~v--kvkN~F~-~~~~~YkGINvtL~~pd---G~ 2399 (2710)
T PRK14707 2335 AAASVNDALRYSVVLEPQ---------GFTAGLRAVLAALDDQGHARV--KLTNQFT-EYSPSFKAINLTLRSPE---GA 2399 (2710)
T ss_pred HHHHhhhheeEEEEcCch---------hHHHHHHHHHHHHHHcCCeEE--EEeeccc-CCCCCccceEEEEEcCC---Cc
Confidence 6899987777887764 488899999998854 56655 6666653 35589999999996443 47
Q ss_pred eEEEEEechhHHHHHHHHHHHhhccccc
Q 002985 448 RLEVQIRTEEMDLIAERGIAAHYSGRVF 475 (861)
Q Consensus 448 ~vEIQIRT~~Mh~~AE~G~aahw~YK~~ 475 (861)
.+|||.=|.+--..-+. .|=.||+.
T Consensus 2400 ~FEIQFHT~qSF~LK~r---~HdLYKQ~ 2424 (2710)
T PRK14707 2400 LWEIQFHTPETFALKER---FHDLYKRT 2424 (2710)
T ss_pred EEEEEeccHHHHHHHHH---HHHHHHHH
Confidence 99999999887666553 57778874
No 134
>PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined []. This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and this C-terminal domain which is composed of a six-stranded half-barrel curved around an alpha helix. The central domain and this domain are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; PDB: 1NI3_A 1JAL_A 2DWQ_B 2DBY_A 2OHF_A.
Probab=93.09 E-value=0.093 Score=47.45 Aligned_cols=52 Identities=19% Similarity=0.344 Sum_probs=40.6
Q ss_pred ceEecCCCCcHHHHHHhhccccccceEEEEE-----------------CCE--ecCCCccCCCCCeEEEEe
Q 002985 549 EIKNLPKGATVVDYAYMIHTEIGNKMVAAKV-----------------NGN--LVSPTHVLANAEVVEIIT 600 (861)
Q Consensus 549 ~i~~lp~gaT~lDfAy~iht~ig~~~~~akV-----------------ng~--~v~l~~~L~~gd~VeIit 600 (861)
+.+.+++|+|+.+.|-.||+|+-+..+.|.| .|+ ...-+|.+++||+|.+..
T Consensus 13 RaWti~~G~~Ap~aAG~IHsDfekgFI~Aevi~~~d~~~~~s~~~~k~~Gk~r~eGK~YivqDGDIi~f~f 83 (84)
T PF06071_consen 13 RAWTIRKGTTAPQAAGVIHSDFEKGFIRAEVISYDDFVEYGSEAAAKEAGKLRLEGKDYIVQDGDIIHFRF 83 (84)
T ss_dssp EEEEEETT-BHHHHHHCC-THHHHHEEEEEEEEHHHHHHHTSHHHHHHTT-SEEEETT-B--TTEEEEEEE
T ss_pred EEEEccCCCCHHHhHhHHHHHHHhhceEEEEEcHHHHHHcCCHHHHHHcCCccccCCceeEeCCCEEEEEc
Confidence 5788999999999999999999999999998 454 566789999999999864
No 135
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=92.99 E-value=0.21 Score=55.68 Aligned_cols=55 Identities=24% Similarity=0.350 Sum_probs=46.0
Q ss_pred CCceEecCCCCcHHHHHHhhccccccceEEEEECCEecC----CCccCCCCCeEEEEecCC
Q 002985 547 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVS----PTHVLANAEVVEIITYNA 603 (861)
Q Consensus 547 ~G~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~----l~~~L~~gd~VeIit~~~ 603 (861)
+|+.+++++|.|..|+.-.+.- -..-++..|||+.|+ .+++|++||.|||++.-.
T Consensus 6 NGk~~el~e~~TL~dLL~~L~i--~~~~VAVeVNgeIVpr~~w~~t~LkeGD~IEII~~Vg 64 (326)
T PRK11840 6 NGEPRQVPAGLTIAALLAELGL--APKKVAVERNLEIVPRSEYGQVALEEGDELEIVHFVG 64 (326)
T ss_pred CCEEEecCCCCcHHHHHHHcCC--CCCeEEEEECCEECCHHHcCccccCCCCEEEEEEEec
Confidence 6899999999999999866543 344667779999999 777999999999999743
No 136
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=92.74 E-value=0.25 Score=47.28 Aligned_cols=68 Identities=18% Similarity=0.215 Sum_probs=49.7
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhc---cccCeeeee
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVD---LILGVLGWS 844 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~---~I~gV~~Vs 844 (861)
.|.|-..|++|=|+.++++|+++||||+..++. + ...+..+++.|. +.+.-.+++..=. ++.+|+.|.
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiA-d-t~dFGIiRmvV~-~~d~A~~~Lee~gF~Vr~~dVlaVE 75 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIA-D-TGDFGIIRMVVD-RPDEAHSVLEEAGFTVRETDVLAVE 75 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEec-c-ccCcceEEEEcC-ChHHHHHHHHHCCcEEEeeeEEEEE
Confidence 589999999999999999999999999999876 3 235788888888 3333344444322 444555443
No 137
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=92.66 E-value=0.38 Score=48.43 Aligned_cols=72 Identities=18% Similarity=0.120 Sum_probs=52.8
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeeec
Q 002985 772 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWST 845 (861)
Q Consensus 772 ~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~gV~~Vs~ 845 (861)
...+..+--+-+|+||.|++.||+.|++|+.+-.+...-.....+++-.|+-.- ..++..|++++||..|+.
T Consensus 95 Viei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~~iP--~~li~el~~i~gVk~i~I 166 (167)
T COG2150 95 VIEIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTERPIP--GDLIDELKKIDGVKKISI 166 (167)
T ss_pred EEEEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEeccCC--HHHHHHHhcccCceeEEe
Confidence 345555667789999999999999999999996653222344566666662111 468999999999999874
No 138
>PRK04374 PII uridylyl-transferase; Provisional
Probab=92.59 E-value=0.29 Score=61.78 Aligned_cols=58 Identities=21% Similarity=0.234 Sum_probs=48.9
Q ss_pred cccCCCCCceeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE
Q 002985 762 ATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE 821 (861)
Q Consensus 762 V~W~~~~~~~~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE 821 (861)
|.|.++.....+.|.|.+.||+|||++|+.+|+..++||.++.+.|. ++.+.-.|.|.
T Consensus 786 V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~--g~~a~D~F~V~ 843 (869)
T PRK04374 786 VEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATF--GERAEDQFQIT 843 (869)
T ss_pred EEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEec--CCEEEEEEEEE
Confidence 56765544446789999999999999999999999999999998876 36788888886
No 139
>PRK08818 prephenate dehydrogenase; Provisional
Probab=92.38 E-value=0.41 Score=54.76 Aligned_cols=64 Identities=20% Similarity=0.213 Sum_probs=50.2
Q ss_pred eEEEEEEEe-ccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE--cCHHHHHHHHHHhcc
Q 002985 772 IQWFSVVCI-DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE--GNLESLVNACSSVDL 836 (861)
Q Consensus 772 ~a~I~V~a~-DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE--~d~~~L~~l~~~L~~ 836 (861)
+..|.+..- |++|.|++|+++++..||||.++++...+ .+.+.+.+.++ .|...|.+.-+.|+.
T Consensus 295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r-~~~y~f~i~~~~~~~~~~~~~~~~~~~~ 361 (370)
T PRK08818 295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTP-AGELHFRIGFEPGSDRAALARAAAEIDA 361 (370)
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEeccc-CceEEEEEEEeccccHHHHHHHHhhhch
Confidence 345777774 99999999999999999999999984333 34455777777 778889888887763
No 140
>PRK06545 prephenate dehydrogenase; Validated
Probab=91.83 E-value=0.34 Score=54.99 Aligned_cols=59 Identities=24% Similarity=0.153 Sum_probs=44.5
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHH
Q 002985 772 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNAC 831 (861)
Q Consensus 772 ~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~ 831 (861)
+.++.|..-||+|.|+.|++.+++.||||.++.+...++.....+++.+. +.+...+..
T Consensus 290 ~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~~-~~~~~~~~~ 348 (359)
T PRK06545 290 FYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISFK-NEEDRERAK 348 (359)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEeC-CHHHHHHHH
Confidence 34688889999999999999999999999999987665544456666666 333333333
No 141
>PRK11899 prephenate dehydratase; Provisional
Probab=91.28 E-value=1 Score=49.72 Aligned_cols=68 Identities=12% Similarity=0.079 Sum_probs=53.4
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecC-CcEEEEEEEEE-c-CHHHHHHHHHHhccccC
Q 002985 772 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRG-RGIAVMLFHVE-G-NLESLVNACSSVDLILG 839 (861)
Q Consensus 772 ~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~-~~~a~m~ftVE-~-d~~~L~~l~~~L~~I~g 839 (861)
.+.|.+...|++|.|.+|.++++..|+|++.+.....++ .+.+.+-++++ + +-..+.+.+..|++...
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~aL~~l~~~~~ 264 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHPEDRNVALALEELRFFSE 264 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhcC
Confidence 345666778999999999999999999999999886533 34577788888 3 44578888888887544
No 142
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=91.24 E-value=1.1 Score=51.90 Aligned_cols=67 Identities=13% Similarity=0.123 Sum_probs=56.4
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhcccc
Q 002985 772 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLIL 838 (861)
Q Consensus 772 ~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~ 838 (861)
...++|+.-||||.|+++.+++...+.||..+.-..+.+.+.+.+.+.|| .+.+|+.++...|++..
T Consensus 325 ~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~G 392 (409)
T TIGR02079 325 KHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELNDKEDFAGLLERMAAAD 392 (409)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCCHHHHHHHHHHHHHCC
Confidence 56799999999999999999777777799988765332345688999999 99999999999998853
No 143
>PRK08639 threonine dehydratase; Validated
Probab=91.05 E-value=0.88 Score=52.85 Aligned_cols=67 Identities=13% Similarity=0.111 Sum_probs=55.9
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhcccc
Q 002985 772 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLIL 838 (861)
Q Consensus 772 ~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~ 838 (861)
...++|+.-||||.|+++.+.+...+.||..++-....+.....+.++|| .+.+|..++++.|++..
T Consensus 336 ~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~G 403 (420)
T PRK08639 336 KHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELKDAEDYDGLIERMEAFG 403 (420)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeCCHHHHHHHHHHHHHCC
Confidence 56799999999999999999777777799999765322345568899999 99999999999999854
No 144
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=90.71 E-value=0.51 Score=51.19 Aligned_cols=65 Identities=23% Similarity=0.230 Sum_probs=45.6
Q ss_pred EEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE--cCHHHHHHHHHHhccc
Q 002985 773 QWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE--GNLESLVNACSSVDLI 837 (861)
Q Consensus 773 a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE--~d~~~L~~l~~~L~~I 837 (861)
..|.|.|-|++|+++.||+.|++.|.||...+--++...+.+-|+..+. .+...++.+.+.+..+
T Consensus 8 ~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~ 74 (287)
T COG0788 8 FILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAPL 74 (287)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCcccHHHHHHHHHHH
Confidence 4589999999999999999999999999888654444345565665555 4423344444444433
No 145
>PRK05007 PII uridylyl-transferase; Provisional
Probab=90.42 E-value=0.96 Score=57.41 Aligned_cols=73 Identities=12% Similarity=0.050 Sum_probs=54.7
Q ss_pred ccCCCCCceeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cC-----HHHHHHHHHHhcc
Q 002985 763 TWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GN-----LESLVNACSSVDL 836 (861)
Q Consensus 763 ~W~~~~~~~~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d-----~~~L~~l~~~L~~ 836 (861)
.+.+......+.|.|.+.||+|+|++|+.+|+..+.||.++.+.+. +++.+.-.|.|. .+ .+.+.++...|.+
T Consensus 692 ~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~-~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L~~ 770 (884)
T PRK05007 692 LLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTS-RDGMAMDTFIVLEPDGSPLSQDRHQVIRKALEQ 770 (884)
T ss_pred EEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEc-CCCeEEEEEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 3444333345679999999999999999999999999999998765 346777778886 32 2456666666664
No 146
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=90.35 E-value=0.79 Score=41.01 Aligned_cols=69 Identities=12% Similarity=0.122 Sum_probs=55.7
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE--cCHHHHHHHHHHhccccCeeeeec
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE--GNLESLVNACSSVDLILGVLGWST 845 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE--~d~~~L~~l~~~L~~I~gV~~Vs~ 845 (861)
.+.+.+.+++++|-.|-.+....|.-++++++...-+.+.+.+.|+|. ...+- +-++|.++-+|..|++
T Consensus 5 qldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~R~~~l---L~~QLeKl~Dv~~V~i 75 (86)
T COG3978 5 QLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSDRSVDL---LTSQLEKLYDVAHVEI 75 (86)
T ss_pred EEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCCCChHH---HHHHHHHHccceeEEE
Confidence 377889999999999999999999999999987665667899999999 44444 5566666677776654
No 147
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=90.18 E-value=0.96 Score=57.18 Aligned_cols=74 Identities=12% Similarity=0.118 Sum_probs=54.8
Q ss_pred cccCCCCCceeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cC-----HHHHHHHHHHhc
Q 002985 762 ATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GN-----LESLVNACSSVD 835 (861)
Q Consensus 762 V~W~~~~~~~~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d-----~~~L~~l~~~L~ 835 (861)
|.+++......+.|.|.+.||+|||++|+.+|+..|.||.+..+.+.. ++.+.-.|.|. .+ .+.+.++...|.
T Consensus 667 V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~-~g~alD~F~V~d~~g~~~~~~~~~~l~~~L~ 745 (854)
T PRK01759 667 VKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQ-DGYVLDSFIVTELNGKLLEFDRRRQLEQALT 745 (854)
T ss_pred EEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEcc-CCEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 345444444466899999999999999999999999999999987643 46777788886 22 245556666655
Q ss_pred c
Q 002985 836 L 836 (861)
Q Consensus 836 ~ 836 (861)
+
T Consensus 746 ~ 746 (854)
T PRK01759 746 K 746 (854)
T ss_pred H
Confidence 4
No 148
>PRK00907 hypothetical protein; Provisional
Probab=90.01 E-value=1.7 Score=40.20 Aligned_cols=68 Identities=13% Similarity=0.043 Sum_probs=55.4
Q ss_pred EEEEEEeccccHHHHHHHHHHhCC--cceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCee
Q 002985 774 WFSVVCIDRRGIMADVTTALATVG--VTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVL 841 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~--iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~ 841 (861)
.|.|.+.++.++...|..++.+.. .+-..+.+...+++....++++|. .+.+||..+-..|.+.++|.
T Consensus 19 piKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats~eQld~iY~~L~~~~~Vk 89 (92)
T PRK00907 19 ELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAESREQYDAAHQALRDHPEVK 89 (92)
T ss_pred eEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhhCCCEE
Confidence 599999999999999999997653 344555555444445667899999 99999999999999999984
No 149
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=89.99 E-value=0.87 Score=40.34 Aligned_cols=52 Identities=25% Similarity=0.321 Sum_probs=39.6
Q ss_pred ceEecCCC-CcHHHHHHhh---cccccc--ceEEEEECCEecCCCccCCCCCeEEEEe
Q 002985 549 EIKNLPKG-ATVVDYAYMI---HTEIGN--KMVAAKVNGNLVSPTHVLANAEVVEIIT 600 (861)
Q Consensus 549 ~i~~lp~g-aT~lDfAy~i---ht~ig~--~~~~akVng~~v~l~~~L~~gd~VeIit 600 (861)
..+++|.+ +|+.|+.-.+ |+++.. ..+..-|||+.++.+++|++||.|.|+.
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~~~~l~dgDevai~P 75 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTDDALLNEGDEVAFIP 75 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCCCcCcCCCCEEEEeC
Confidence 46778876 8888876665 333322 3446779999999999999999999986
No 150
>PRK05092 PII uridylyl-transferase; Provisional
Probab=89.86 E-value=1.1 Score=57.04 Aligned_cols=75 Identities=16% Similarity=0.240 Sum_probs=54.4
Q ss_pred cccCCCCCceeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE---c----CHHHHHHHHHHh
Q 002985 762 ATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE---G----NLESLVNACSSV 834 (861)
Q Consensus 762 V~W~~~~~~~~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE---~----d~~~L~~l~~~L 834 (861)
+.+........+.|.|.+.||+|+|++|+.+|+..|.||.+..+.+.. ++.+...|.|. + +.+.+.++...|
T Consensus 722 v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~-dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L 800 (931)
T PRK05092 722 TEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTT-DGRALDTFWIQDAFGRDEDEPRRLARLAKAI 800 (931)
T ss_pred EEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEec-CCeEEEEEEEECCCCCCCCCHHHHHHHHHHH
Confidence 344333332356799999999999999999999999999999987653 46666668884 2 445666666666
Q ss_pred ccc
Q 002985 835 DLI 837 (861)
Q Consensus 835 ~~I 837 (861)
.++
T Consensus 801 ~~~ 803 (931)
T PRK05092 801 EDA 803 (931)
T ss_pred HHH
Confidence 543
No 151
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=89.68 E-value=2.1 Score=45.77 Aligned_cols=71 Identities=6% Similarity=-0.023 Sum_probs=57.3
Q ss_pred EEEEEEecccc--HHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE---cCHHHHHHHHHHhccccCeeeee
Q 002985 774 WFSVVCIDRRG--IMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE---GNLESLVNACSSVDLILGVLGWS 844 (861)
Q Consensus 774 ~I~V~a~DR~G--lLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE---~d~~~L~~l~~~L~~I~gV~~Vs 844 (861)
.+.|.+.+..+ +...+.+.+.+.+..+.+++++...+.+...+..++. .+...|++++++|...|||..|+
T Consensus 144 ~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~~~~le~iv~~L~~~pgV~~v~ 219 (225)
T PRK15385 144 ILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRKTRELIISRIGDNDNITAIH 219 (225)
T ss_pred EEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCchhhHHHHHHHHhCCCCeEEEE
Confidence 57788877664 6899999999999999999986443345566666666 47899999999999999999875
No 152
>PRK04374 PII uridylyl-transferase; Provisional
Probab=89.49 E-value=1.3 Score=56.08 Aligned_cols=74 Identities=14% Similarity=0.083 Sum_probs=55.6
Q ss_pred cccCCCCCceeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE--cC--HHHHHHHHHHhcc
Q 002985 762 ATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE--GN--LESLVNACSSVDL 836 (861)
Q Consensus 762 V~W~~~~~~~~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE--~d--~~~L~~l~~~L~~ 836 (861)
+.|........+.+.|.+.||+|+++.|+.+|+..|.||.++.+.+. .++.+.-.|.|. .+ .+...++...|.+
T Consensus 680 ~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~-~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~ 757 (869)
T PRK04374 680 KARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDA-PHDAIFDVFEVLPQDTYADGDPQRLAAALRQ 757 (869)
T ss_pred EEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEc-CCCEEEEEEEEeCCCCCChHHHHHHHHHHHH
Confidence 35543333335679999999999999999999999999999998865 357888889888 22 3455666666554
No 153
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=89.37 E-value=1.1 Score=37.83 Aligned_cols=56 Identities=20% Similarity=0.331 Sum_probs=42.8
Q ss_pred EeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhc
Q 002985 779 CIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVD 835 (861)
Q Consensus 779 a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~ 835 (861)
..|++|.++.|.++|++.++||..+..... ..+...+.|.+. .+.+.+.+++.++.
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~-~~~~~~is~~v~~~d~~~~~~~l~~~~ 65 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQNVS-RDGTTDISFTVPKSDLKKALAVLEKLK 65 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEeCCC-CCCcEEEEEEecHHHHHHHHHHHHHHH
Confidence 468899999999999999999987753322 112356778888 78888888877765
No 154
>cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the family contain a C-terminal TGS domain. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=89.27 E-value=0.39 Score=43.36 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=42.0
Q ss_pred ceEecCCCCcHHHHHHhhccccccceEEEEE-----------------CCE--ecCCCccCCCCCeEEEE
Q 002985 549 EIKNLPKGATVVDYAYMIHTEIGNKMVAAKV-----------------NGN--LVSPTHVLANAEVVEII 599 (861)
Q Consensus 549 ~i~~lp~gaT~lDfAy~iht~ig~~~~~akV-----------------ng~--~v~l~~~L~~gd~VeIi 599 (861)
+.+.+++|+|+-+.|-.||+|+-+..+.|.| .|+ +-.-+|.+++||++.+.
T Consensus 13 RAWti~~g~tAp~AAG~IHsDfekgFIrAeVi~~~d~i~~g~~~~ak~~Gkir~eGK~Yiv~DGDi~~f~ 82 (83)
T cd04867 13 RAWTIRKGTKAPQAAGVIHTDFEKGFIRAEVMKYEDLVELGSEAAAKEAGKYRQEGKDYVVQDGDIIFFK 82 (83)
T ss_pred EEEEccCCCChHHhcCCcccccccCcEEEEEEcHHHHHHcCCHHHHHHcChhhhhCCceEeeCCeEEEEE
Confidence 6789999999999999999999999999888 222 23347789999998763
No 155
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.15 E-value=0.56 Score=43.29 Aligned_cols=52 Identities=23% Similarity=0.201 Sum_probs=40.1
Q ss_pred eEecCCCCcHHHHHHh-----hccccccceEEEEECCEecCCCccCCCCCeEEEEec
Q 002985 550 IKNLPKGATVVDYAYM-----IHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 601 (861)
Q Consensus 550 i~~lp~gaT~lDfAy~-----iht~ig~~~~~akVng~~v~l~~~L~~gd~VeIit~ 601 (861)
-+.|++|+|+.|..-+ +.++++-+.-..-|=|+.+.++.+|++||.|||+--
T Consensus 20 ~v~v~egatV~dAi~~Sgll~~~~~idl~~n~~GI~~k~~kl~~~l~dgDRVEIyRP 76 (99)
T COG2914 20 RVQLQEGATVEDAILASGLLELFPDIDLHENKVGIYSKPVKLDDELHDGDRVEIYRP 76 (99)
T ss_pred EEEeccCcCHHHHHHhcchhhccccCCccccceeEEccccCccccccCCCEEEEecc
Confidence 5789999999998644 456665543333345899999999999999999764
No 156
>PRK04998 hypothetical protein; Provisional
Probab=89.12 E-value=2.2 Score=38.93 Aligned_cols=68 Identities=10% Similarity=0.108 Sum_probs=52.7
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCee
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVL 841 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~ 841 (861)
.+.|.+.+..+++..|.+++.+..-.-..+.....+++....+++++. .+.+||..+-.+|.+++||.
T Consensus 17 ~~Kvig~~~~~~~~~v~~v~~~~~~~~~~~~~r~S~~GkY~Svtv~v~v~s~eq~~~iY~~L~~~~~V~ 85 (88)
T PRK04998 17 TYKVMGLARPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITITATSIEQVETLYEELAKIEGVR 85 (88)
T ss_pred eEEEEEeCcHhHHHHHHHHHHHhCCCCCCceEccCCCCEEEEEEEEEEECCHHHHHHHHHHHhcCCCEE
Confidence 488999999999999999997642222224444344445667888888 99999999999999999996
No 157
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=89.11 E-value=1.5 Score=55.37 Aligned_cols=64 Identities=17% Similarity=0.202 Sum_probs=50.0
Q ss_pred eeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-c------CHHHHHHHHHHhc
Q 002985 771 SIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-G------NLESLVNACSSVD 835 (861)
Q Consensus 771 ~~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~------d~~~L~~l~~~L~ 835 (861)
..+.|.|.+.||+|+|++|+.+|+..|.||.++.+.+.. ++.+.-.|.|. . +.+.+.++...|.
T Consensus 667 ~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~-~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~ 737 (850)
T TIGR01693 667 GGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTK-DGVALDTFVVQDLFGSPPAAERVFQELLQGLV 737 (850)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEec-CCEEEEEEEEECCCCCCCCcHHHHHHHHHHHH
Confidence 356799999999999999999999999999999988553 46777788886 2 2334666665554
No 158
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=88.78 E-value=1.4 Score=39.39 Aligned_cols=64 Identities=23% Similarity=0.313 Sum_probs=48.6
Q ss_pred EEEEEEEeccccHHHHHHHHHHh-CCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeeec
Q 002985 773 QWFSVVCIDRRGIMADVTTALAT-VGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWST 845 (861)
Q Consensus 773 a~I~V~a~DR~GlLadItsvIa~-~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~Vs~ 845 (861)
..+-|.+ +|+-+.+|.+.|++ .|+-|.... + + ..+-+++| .+.+.+...+.+|+.++||++++-
T Consensus 6 ss~vV~~--~p~~~~~v~~~l~~~~gvEVh~~~---~-~---GKiVVtiE~~~~~~~~~~~~~i~~l~GVlsa~l 71 (79)
T PF03927_consen 6 SSLVVHA--RPERLEEVAEALAAIPGVEVHAVD---E-D---GKIVVTIEAESSEEEVDLIDAINALPGVLSASL 71 (79)
T ss_dssp EEEEEEE---CCCHHHHHHHHCCSTTEEEEEEE---T-T---TEEEEEEEESSHHHHHHHHHHHCCSTTEEEEEE
T ss_pred EEEEEEE--CchhHHHHHHHHHcCCCcEEEeeC---C-C---CeEEEEEEeCChHHHHHHHHHHHcCCCceEEEE
Confidence 3444544 78999999999987 566554432 2 1 44778999 999999999999999999999863
No 159
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=88.55 E-value=1.8 Score=50.66 Aligned_cols=73 Identities=14% Similarity=-0.030 Sum_probs=58.3
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCC-cE-EEEEEEEEcCHHHHHHHHHHhccccCeeeee
Q 002985 772 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGR-GI-AVMLFHVEGNLESLVNACSSVDLILGVLGWS 844 (861)
Q Consensus 772 ~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~-~~-a~m~ftVE~d~~~L~~l~~~L~~I~gV~~Vs 844 (861)
.+.|.+...|++|.|++|-+++++.||||+.+.+...+.. .. ..+-++++.+...+..++..|++...+..|+
T Consensus 31 ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~~~~l~~aL~~Lk~~~~~~~~~ 105 (464)
T TIGR01270 31 RLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFHYGLQEAMDLLKSGLDVHEVS 105 (464)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcCHHHHHHHHHHHHHhcccceec
Confidence 4567788899999999999999999999999998765322 23 5666777766688999999999887765554
No 160
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.37 E-value=0.86 Score=56.14 Aligned_cols=58 Identities=21% Similarity=0.268 Sum_probs=45.7
Q ss_pred cccCCCCCceeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE
Q 002985 762 ATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE 821 (861)
Q Consensus 762 V~W~~~~~~~~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE 821 (861)
|.|.++.......++|++.||+|+|++|+.++++.+.+|.++.+.|- + -.+.=.|.|.
T Consensus 781 v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~-G-ErveD~F~vt 838 (867)
T COG2844 781 VTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTF-G-ERVEDVFIVT 838 (867)
T ss_pred eeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccc-c-ccceeEEEEe
Confidence 67876555445569999999999999999999999999999998864 3 2354455555
No 161
>PRK00341 hypothetical protein; Provisional
Probab=88.19 E-value=2.6 Score=38.84 Aligned_cols=68 Identities=13% Similarity=0.074 Sum_probs=54.8
Q ss_pred EEEEEEeccccHHHHHHHHHHhC-CcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCee
Q 002985 774 WFSVVCIDRRGIMADVTTALATV-GVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVL 841 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~-~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~ 841 (861)
.|.|.+.+..++...|..++.+. +..-..+.+...+++....++++|. .+.+||..+-..|++.++|.
T Consensus 19 ~~KViG~~~~~~~~~V~~iv~~~~~~~~~~~~~k~Ss~GkY~S~tv~i~~~s~~q~~~iy~~L~~~~~V~ 88 (91)
T PRK00341 19 PIKVIGDTGVGFKDLVIEILQKHADVDLSTLAERQSSNGKYTTVQLHIVATDEDQLQDINSALRATGRVH 88 (91)
T ss_pred cEEEEEcCchhHHHHHHHHHHHhCCCcccceeeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhhCCCEE
Confidence 48999999999999999999753 3444455555444445677899999 99999999999999999995
No 162
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=88.19 E-value=2.6 Score=36.07 Aligned_cols=51 Identities=33% Similarity=0.381 Sum_probs=35.4
Q ss_pred EEEEEEEe----ccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHH
Q 002985 773 QWFSVVCI----DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNA 830 (861)
Q Consensus 773 a~I~V~a~----DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l 830 (861)
..|.|.+. |.+|+++.|++.|+++||||..+++. ..+.|-|. .+.+.-.++
T Consensus 7 ~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~isS~-------~~~~ilV~~~~~~~A~~~ 62 (65)
T PF13840_consen 7 AKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMISSE-------ISISILVKEEDLEKAVEA 62 (65)
T ss_dssp EEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEEES-------SEEEEEEEGGGHHHHHHH
T ss_pred EEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEEEe-------eeEEEEEeHHHHHHHHHH
Confidence 45666665 79999999999999999999998732 22455566 554444333
No 163
>PRK12483 threonine dehydratase; Reviewed
Probab=87.93 E-value=1.7 Score=51.93 Aligned_cols=62 Identities=13% Similarity=0.053 Sum_probs=53.9
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHH-HHHHHHhcc
Q 002985 772 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESL-VNACSSVDL 836 (861)
Q Consensus 772 ~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L-~~l~~~L~~ 836 (861)
...|.|+.-||||.|++++++|+.. ||..++-.. ...+.+.+.+.|| ++.+|+ ..++.+|++
T Consensus 345 ~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~-~~~~~~~v~v~ie~~~~~~~~~~i~~~l~~ 408 (521)
T PRK12483 345 EAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRY-ADAREAHLFVGVQTHPRHDPRAQLLASLRA 408 (521)
T ss_pred EEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEe-cCCCeeEEEEEEEeCChhhhHHHHHHHHHH
Confidence 5679999999999999999999977 999887764 3445689999999 999998 999999975
No 164
>PLN02550 threonine dehydratase
Probab=87.46 E-value=1.7 Score=52.64 Aligned_cols=62 Identities=10% Similarity=0.093 Sum_probs=54.1
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhcc
Q 002985 772 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDL 836 (861)
Q Consensus 772 ~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~ 836 (861)
...|.|..-||||.|++++++|+.. ||..++-... ..+.+.+.+.|| ++.+|+..++.+|++
T Consensus 417 ~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~-~~~~~~v~v~ie~~~~~~~~~i~~~l~~ 479 (591)
T PLN02550 417 EAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYS-SEKEALVLYSVGVHTEQELQALKKRMES 479 (591)
T ss_pred EEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEec-CCCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence 4568999999999999999999975 9999877642 346799999999 999999999999986
No 165
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=87.09 E-value=2.1 Score=41.24 Aligned_cols=58 Identities=16% Similarity=0.234 Sum_probs=47.2
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHH
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSS 833 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~ 833 (861)
-+-|+..|+||-|..|+.++.++++|+.-+-+-..++ +.|.+.|.++ |.+.+.+.+..
T Consensus 71 VlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek-~KAlli~r~e-d~d~~~~aLed 128 (142)
T COG4747 71 VLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK-QKALLIVRVE-DIDRAIKALED 128 (142)
T ss_pred EEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC-ceEEEEEEhh-HHHHHHHHHHH
Confidence 5789999999999999999999999999887665544 6788888888 66666555544
No 166
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.02 E-value=1.8 Score=34.79 Aligned_cols=50 Identities=26% Similarity=0.427 Sum_probs=36.4
Q ss_pred EeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHH
Q 002985 779 CIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVN 829 (861)
Q Consensus 779 a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~ 829 (861)
..|++|.+++|.+.|++.++||..++.... ..+...+.|++. .|.+...+
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~-~~~~~~is~~v~~~~~~~~~~ 58 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVS-RGGTTDISFTVPKSDLEKALA 58 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCC-CCCcEEEEEEEeHHHHHHHHH
Confidence 578899999999999999999988865322 123356778887 55554443
No 167
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=86.82 E-value=1.9 Score=54.81 Aligned_cols=65 Identities=9% Similarity=0.060 Sum_probs=51.4
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-c-------CHHHHHHHHHHhccc
Q 002985 772 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-G-------NLESLVNACSSVDLI 837 (861)
Q Consensus 772 ~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~-------d~~~L~~l~~~L~~I 837 (861)
.+.|.|.+.||+|++++|+.+|+..|.||.+..+-+. +++.+.-.|.|. . +.+.+.++...|.+.
T Consensus 704 ~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt-~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~ 776 (895)
T PRK00275 704 GTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITS-SSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEA 776 (895)
T ss_pred eEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEc-CCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999998655 457777788885 2 124566677776654
No 168
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=86.30 E-value=3.1 Score=47.99 Aligned_cols=67 Identities=9% Similarity=0.074 Sum_probs=52.2
Q ss_pred EEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecC-CcEEEEEEEEEc--CHHHHHHHHHHhccccC
Q 002985 773 QWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRG-RGIAVMLFHVEG--NLESLVNACSSVDLILG 839 (861)
Q Consensus 773 a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~-~~~a~m~ftVE~--d~~~L~~l~~~L~~I~g 839 (861)
+.|.+...|++|.|.+|-++++..|+|++.+.....++ .+.+.+-+++++ +-..+.+++..|+....
T Consensus 298 tsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~~d~~~~~aL~~l~~~~~ 367 (386)
T PRK10622 298 TTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANLRSAEMQKALKELGEITR 367 (386)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCCCCHHHHHHHHHHHHhcC
Confidence 34556667999999999999999999999999886533 345777788883 44568888888887543
No 169
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=85.87 E-value=4 Score=44.97 Aligned_cols=70 Identities=11% Similarity=0.126 Sum_probs=55.7
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEec-CCcEEEEEEEEE--cCHHHHHHHHHHhccccCee
Q 002985 772 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDR-GRGIAVMLFHVE--GNLESLVNACSSVDLILGVL 841 (861)
Q Consensus 772 ~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~-~~~~a~m~ftVE--~d~~~L~~l~~~L~~I~gV~ 841 (861)
.+.|-+..-|++|.|.++-.+++..|||++.+.....+ .-+.+.+-+++| .+-.++...+..|++....+
T Consensus 194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~~~v~~AL~el~~~t~~~ 266 (279)
T COG0077 194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDDPLVKEALEELKEITEFV 266 (279)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCcHhHHHHHHHHHhheeEE
Confidence 45566677799999999999999999999999987653 234577888888 44467889999998776543
No 170
>PRK03059 PII uridylyl-transferase; Provisional
Probab=85.42 E-value=2.7 Score=53.20 Aligned_cols=64 Identities=14% Similarity=0.079 Sum_probs=50.1
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-c-----CHHHHHHHHHHhcc
Q 002985 772 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-G-----NLESLVNACSSVDL 836 (861)
Q Consensus 772 ~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~-----d~~~L~~l~~~L~~ 836 (861)
.+.|.|.+.||+|++++|+.+|+..|.||.++.+-+. .++.+.-.|.|. . +.+.+.++...|.+
T Consensus 678 ~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~-~~g~~ld~f~V~~~~~~~~~~~~~~~i~~~l~~ 747 (856)
T PRK03059 678 GLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTT-RHGYALDTFQVLDPEEDVHYRDIINLVEHELAE 747 (856)
T ss_pred eEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEc-CCCeEEEEEEEeCCCCCCChHHHHHHHHHHHHH
Confidence 5679999999999999999999999999999998755 357888888885 1 22345556555554
No 171
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=85.32 E-value=3.2 Score=38.02 Aligned_cols=61 Identities=25% Similarity=0.306 Sum_probs=47.2
Q ss_pred EeccccHHHHHHHHHHh-CCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeeec
Q 002985 779 CIDRRGIMADVTTALAT-VGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWST 845 (861)
Q Consensus 779 a~DR~GlLadItsvIa~-~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~Vs~ 845 (861)
..=+|.-+++|.+.|.+ .|+-|-.... ....+-++|| .+...+...+.+|+.++||++++-
T Consensus 12 V~~~Pe~~~~V~~~l~~ipg~Evh~~d~------~~GKiVVtiE~~~~~~~~~~i~~I~~l~GVlsa~l 74 (87)
T PRK10553 12 VQAKSERISDISTQLNAFPGCEVAVSDA------PSGQLIVVVEAEDSETLLQTIESVRNVEGVLAVSL 74 (87)
T ss_pred EEeChHHHHHHHHHHHcCCCcEEEeecC------CCCeEEEEEEeCChHHHHHHHHHHHcCCCceEEEE
Confidence 35578889999999986 4555543321 1245788999 999999999999999999999874
No 172
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=85.21 E-value=3.1 Score=49.55 Aligned_cols=63 Identities=13% Similarity=0.062 Sum_probs=54.7
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccc
Q 002985 772 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLI 837 (861)
Q Consensus 772 ~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I 837 (861)
.+.+.|+.-||||.|+++.++|+. .||+.++-.. .+.+.+.+.+.|| .+.+|+..++++|+..
T Consensus 325 e~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~-~~~~~a~v~vgie~~~~~~~~~l~~~L~~~ 388 (499)
T TIGR01124 325 EALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRY-ADRKDAHIFVGVQLSNPQERQEILARLNDG 388 (499)
T ss_pred EEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEe-cCCCeEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 567999999999999999999996 6999888764 3456789999999 9999999999999764
No 173
>PRK02047 hypothetical protein; Provisional
Probab=84.69 E-value=5.9 Score=36.53 Aligned_cols=68 Identities=10% Similarity=-0.012 Sum_probs=55.1
Q ss_pred EEEEEEeccccHHHHHHHHHHhC--CcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCee
Q 002985 774 WFSVVCIDRRGIMADVTTALATV--GVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVL 841 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~--~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~ 841 (861)
.+.|.+.+..++...|.+++... +..-.++++...+++....++++|. .+.+||..+-.+|.+.++|.
T Consensus 18 ~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~s~eq~~~iY~~L~~~~~Vk 88 (91)
T PRK02047 18 PIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRATSREQLDNIYRALTGHPMVK 88 (91)
T ss_pred eEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEECCHHHHHHHHHHHhhCCCEE
Confidence 48899999999999999999875 3334556555444545677888888 99999999999999999984
No 174
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=83.70 E-value=5.7 Score=46.35 Aligned_cols=67 Identities=7% Similarity=0.054 Sum_probs=54.0
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecC-CcEEEEEEEEE-cCHHHHHHHHHHhcccc
Q 002985 772 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRG-RGIAVMLFHVE-GNLESLVNACSSVDLIL 838 (861)
Q Consensus 772 ~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~-~~~a~m~ftVE-~d~~~L~~l~~~L~~I~ 838 (861)
.+.|.+...|++|.|++|.+++++.||||+.+.+...+. ...+.+-++++ .....+..++..|++.-
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~~~~v~~aL~~Lk~~~ 84 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEASDRKLEGVIEHLRQKA 84 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCccHHHHHHHHHHHHhc
Confidence 356777889999999999999999999999999876532 23467777777 43488999999999865
No 175
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.40 E-value=4.4 Score=35.75 Aligned_cols=56 Identities=14% Similarity=0.200 Sum_probs=42.3
Q ss_pred EeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHH---HHH-HHHHHhccccCe
Q 002985 779 CIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLE---SLV-NACSSVDLILGV 840 (861)
Q Consensus 779 a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~---~L~-~l~~~L~~I~gV 840 (861)
..+++|++++|.++|++.++||.-+... . ..+.|+|. .+.. .|. .+.+.|+++..|
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI~~s-~-----~~iSftv~~~d~~~~~~~~~~l~~~l~~~~~v 71 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLITTS-E-----ISVALTLDNTGSTSDQLLTQALLKELSQICDV 71 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEeec-C-----CEEEEEEeccccchhHHHHHHHHHHHHhccEE
Confidence 4688999999999999999999999642 1 55888888 5532 465 677777775433
No 176
>PF04359 DUF493: Protein of unknown function (DUF493); InterPro: IPR007454 This family includes several proteins of uncharacterised function.; PDB: 1RWU_A 2JOQ_A 2H9Z_A.
Probab=82.12 E-value=3.4 Score=37.23 Aligned_cols=68 Identities=10% Similarity=0.026 Sum_probs=52.4
Q ss_pred EEEEEEeccccHHHHHHHHHHhC--CcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCee
Q 002985 774 WFSVVCIDRRGIMADVTTALATV--GVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVL 841 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~--~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~ 841 (861)
.+.|.+.+..++..+|..++.+. ++.-..++....+++....+++++. .+.+|+..+-.+|++++||.
T Consensus 12 ~~KvIg~~~~~~~~~v~~iv~~~~~~~~~~~~~~k~S~~GkY~Svtv~v~v~s~eq~~~iy~~L~~~~~Vk 82 (85)
T PF04359_consen 12 PFKVIGKAEEDFVEAVKEIVEKHAPEFDDEKVSSKPSSKGKYVSVTVSVTVESAEQVDAIYRELKAHPGVK 82 (85)
T ss_dssp EEEEEEC-STTHHHHHCCCCCCHSS--SSEEEEECCSTTSSEEEEEEEEEESSHHHHHHHHHHHTTSSSEE
T ss_pred eEEEEEECcHhHHHHHHHHHHHhCCcCccCceEEecCCCCeEEEEEEEEEECCHHHHHHHHHHhccCCCEE
Confidence 58999999999999999988763 2233444444344556778899999 99999999999999999996
No 177
>PRK09224 threonine dehydratase; Reviewed
Probab=81.94 E-value=4.7 Score=48.12 Aligned_cols=64 Identities=9% Similarity=0.036 Sum_probs=54.3
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHH-HHHHHHHhcccc
Q 002985 772 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLES-LVNACSSVDLIL 838 (861)
Q Consensus 772 ~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~-L~~l~~~L~~I~ 838 (861)
.+.+.|+.-||||-|+++.++|+ +.||..++-... +.+.+.+.+.|| .+.++ +..++++|+...
T Consensus 328 e~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~-~~~~a~V~vgie~~~~~~~~~~i~~~L~~~g 393 (504)
T PRK09224 328 EALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYA-DAKEAHIFVGVQLSRGQEERAEIIAQLRAHG 393 (504)
T ss_pred EEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEec-CCCeEEEEEEEEeCChhhHHHHHHHHHHHcC
Confidence 56789999999999999999999 689999887643 446788999999 88888 999999997643
No 178
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=81.81 E-value=3.3 Score=37.19 Aligned_cols=50 Identities=26% Similarity=0.169 Sum_probs=37.5
Q ss_pred eEecCCCCcHHHHHHhh---cccccc----------ceEEEEECCEecCCCc--cCCCCCeEEEEe
Q 002985 550 IKNLPKGATVVDYAYMI---HTEIGN----------KMVAAKVNGNLVSPTH--VLANAEVVEIIT 600 (861)
Q Consensus 550 i~~lp~gaT~lDfAy~i---ht~ig~----------~~~~akVng~~v~l~~--~L~~gd~VeIit 600 (861)
.+++| |+|+.|+--.+ |+++.. ..+..-|||+.++.+. +|++||.|.|+.
T Consensus 19 ~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~~~l~dgdev~i~P 83 (88)
T TIGR01687 19 EIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLGTELKDGDVVAIFP 83 (88)
T ss_pred EEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCCCCCCCCCEEEEeC
Confidence 45667 89999987666 443221 2356779999998887 999999999986
No 179
>PRK09169 hypothetical protein; Validated
Probab=80.09 E-value=11 Score=51.34 Aligned_cols=108 Identities=18% Similarity=0.170 Sum_probs=77.4
Q ss_pred EEeecChhHHHHHHH----hcCCCc----ccccceeeEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhc-cccCCCcccc
Q 002985 350 RSVCKEPYSIYKAVL----KSRGSI----NEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHG-IWTPIPRAMK 420 (861)
Q Consensus 350 ~~R~K~~ySI~~Km~----rk~~~~----~ei~Dl~giRIIv~~~~~~~~~~~~~~~~dCY~vlg~vh~-~~~pip~~~k 420 (861)
..|.|+.-|+.+|+. +++.++ ..|+|.+-.=|++++. .++..+..+++.+.. -|+-+ +++
T Consensus 1917 e~RlKS~~SL~rKL~~~~~~~~~s~e~Aaa~VnDALRYtvvLp~~---------~Fva~~r~iv~~L~~~G~~~V--kv~ 1985 (2316)
T PRK09169 1917 AHRLKSEGSLFEKLRGLMAKKHLTPEEAAALVNDALRYSVVLPPQ---------TFVAGYRRILGALDEQGHTRT--RVT 1985 (2316)
T ss_pred HhhhCCHHHHHHHHHHHHhccCCCHHHHHHhccceeeEEEecCCc---------cHHHHHHHHHHHHHhCCCeEE--EEE
Confidence 459999999999997 456555 5788876665666553 478889999998854 46655 455
Q ss_pred ccccCCCCCCccceEEEE-eccCCccceeEEEEEechhHHHHHHHHHHHhhccccc
Q 002985 421 DYIATPKPNGYQSLHTTL-IPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVF 475 (861)
Q Consensus 421 DyIa~PK~NGYqSLHt~V-~~~~~~~~~~vEIQIRT~~Mh~~AE~G~aahw~YK~~ 475 (861)
++-.. ..++|..+|+++ ... ++..+|||-=|..--..-+. .|=.||+.
T Consensus 1986 N~F~~-~~~~YkGVNv~l~~s~---~g~~fEIQFHT~qSF~lK~r---~H~lYkq~ 2034 (2316)
T PRK09169 1986 NHFKK-RGPAFKGINVTLDATG---EGVRLEIQFHTPQTFDLKER---FHDLYKQA 2034 (2316)
T ss_pred eeecc-CCCCccceEEeeecCC---CCceEEEEecCHHHHHHHHH---hHHHHHHH
Confidence 53332 249999999999 432 35799999999876665553 56678863
No 180
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=79.94 E-value=4.1 Score=35.83 Aligned_cols=55 Identities=13% Similarity=0.109 Sum_probs=43.5
Q ss_pred eccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCH-H-HHHHHHHHhccccCe
Q 002985 780 IDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNL-E-SLVNACSSVDLILGV 840 (861)
Q Consensus 780 ~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~-~-~L~~l~~~L~~I~gV 840 (861)
..++|.+++|-+++++.++|+.-+... ...+.|++. .+. . +|..+++.|+++..|
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd~I~~s------~~~isftv~~~~~~~~~l~~l~~el~~~~~v 69 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVDLISTS------EVHVSMALHMENAEDTNLDAAVKDLQKLGTV 69 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEEEEEeC------CCEEEEEEehhhcChHHHHHHHHHHHHheEE
Confidence 456899999999999999999998642 155888998 543 2 899999999885533
No 181
>PRK11898 prephenate dehydratase; Provisional
Probab=79.87 E-value=7.9 Score=42.77 Aligned_cols=67 Identities=12% Similarity=0.150 Sum_probs=50.1
Q ss_pred EEEEEEEec-cccHHHHHHHHHHhCCcceeeeEEeEecC-CcEEEEEEEEEc--CHHHHHHHHHHhccccC
Q 002985 773 QWFSVVCID-RRGIMADVTTALATVGVTICSCVAEIDRG-RGIAVMLFHVEG--NLESLVNACSSVDLILG 839 (861)
Q Consensus 773 a~I~V~a~D-R~GlLadItsvIa~~~iNI~sv~~~~~~~-~~~a~m~ftVE~--d~~~L~~l~~~L~~I~g 839 (861)
+.|.+...+ ++|.|.++-+++++.|+||+.+.....++ ...+.+-++++. +-+.+.+++..|++.-.
T Consensus 197 tslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~~~~~~~~~al~~L~~~~~ 267 (283)
T PRK11898 197 TSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHIDDVLVAEALKELEALGE 267 (283)
T ss_pred EEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEccCCCHHHHHHHHHHHHhcC
Confidence 446666655 59999999999999999999999886532 234666777772 33378899999887543
No 182
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=79.23 E-value=0.54 Score=53.37 Aligned_cols=59 Identities=20% Similarity=0.253 Sum_probs=43.8
Q ss_pred Cceeeec-CCC------------ceEecCCCCcHHHHHHhhccccccceEEEEECCEecCCCccCCCCCeEEE
Q 002985 539 SRVFVFT-PRG------------EIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEI 598 (861)
Q Consensus 539 ~~I~Vft-P~G------------~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~l~~~L~~gd~VeI 598 (861)
++|.++| .+| +....+.|||++||+|.||++--..++.|. .-+...-+|.+++||++..
T Consensus 297 ~evrawti~~g~kap~aaG~Ih~Dfe~~fi~aevi~~~d~i~~~~~~~Akeag-~~r~~GkdY~vqdGDVi~F 368 (372)
T COG0012 297 KEVRAWTIKDGSKAPDAAGVIHPDFEKGFIRAEVISYADLIHYGGEAAAKEAG-KRRLEGKDYIVQDGDVIHF 368 (372)
T ss_pred CeEEEEEeccCCcccccCCccccchhhccccceEeeHHHHHhcCcHHHHHHhc-ceeeccccceecCCCEEEE
Confidence 7888888 233 577889999999999999998323333333 2333788999999999944
No 183
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.19 E-value=5.5 Score=35.11 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=44.3
Q ss_pred EeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cC----HHHHHHHHHHhccccCe
Q 002985 779 CIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GN----LESLVNACSSVDLILGV 840 (861)
Q Consensus 779 a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d----~~~L~~l~~~L~~I~gV 840 (861)
..+.+|++++|.+++++.++|+.-+... ...+.|+|. .+ .+.+..+++.|+++..|
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~~s------~~~isftv~~~~~~~~~~~~~~l~~el~~~~~v 71 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVSTS------ETNVTVSLDPDPNGLDPDVLDALLDDLNQICRV 71 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEeC------CCEEEEEEeCcccccchHHHHHHHHHHHhceEE
Confidence 4578999999999999999999998642 155889999 44 23788999999885544
No 184
>PLN02317 arogenate dehydratase
Probab=78.94 E-value=8.9 Score=44.19 Aligned_cols=67 Identities=10% Similarity=0.038 Sum_probs=50.7
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCC---------------cEEEEEEEEE-c-CHHHHHHHHHHh
Q 002985 772 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGR---------------GIAVMLFHVE-G-NLESLVNACSSV 834 (861)
Q Consensus 772 ~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~---------------~~a~m~ftVE-~-d~~~L~~l~~~L 834 (861)
.+.|.+...|++|.|.++-++++..+|||+.+.....+.. ..+.+-+++| . +-+.+..+|..|
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~~d~~~~~aL~~L 362 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASMADPRAQNALAHL 362 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcCcCCHHHHHHHHHH
Confidence 3456677789999999999999999999999998765433 2356667777 3 235677888888
Q ss_pred cccc
Q 002985 835 DLIL 838 (861)
Q Consensus 835 ~~I~ 838 (861)
+..-
T Consensus 363 ~~~~ 366 (382)
T PLN02317 363 QEFA 366 (382)
T ss_pred HHhc
Confidence 7744
No 185
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=78.24 E-value=9.1 Score=38.55 Aligned_cols=72 Identities=14% Similarity=0.129 Sum_probs=54.7
Q ss_pred EEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecC-CcEEEEEEEEEcC-HHHHHHHHHHhccccCeeeeec
Q 002985 773 QWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRG-RGIAVMLFHVEGN-LESLVNACSSVDLILGVLGWST 845 (861)
Q Consensus 773 a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~-~~~a~m~ftVE~d-~~~L~~l~~~L~~I~gV~~Vs~ 845 (861)
..+.|+..|+||=|-.+-+=|+..|+||.++.-..++. .+...+.++++.| .+....++..+ .-.||.=++.
T Consensus 6 itldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~~~~~~~i~~~~-e~~Gi~I~~~ 79 (170)
T COG2061 6 ITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDREDKDAKIIRLL-EEEGIIIIRF 79 (170)
T ss_pred EEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEecccHHHHHHHHHH-HhCCcEEEEe
Confidence 46889999999999999999999999999996543322 3557778888844 55566666666 7778776655
No 186
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=77.04 E-value=6.3 Score=32.65 Aligned_cols=51 Identities=10% Similarity=0.176 Sum_probs=38.3
Q ss_pred EeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCH--HHHHHHHHHhc
Q 002985 779 CIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNL--ESLVNACSSVD 835 (861)
Q Consensus 779 a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~--~~L~~l~~~L~ 835 (861)
..+++|..++|-++|++.++|+.-+.+. ...+.|+|..+. +.+.++++.|+
T Consensus 10 m~~~~~~~~~if~~l~~~~i~v~~i~t~------~~~is~~v~~~~~~~~~~~l~~~l~ 62 (62)
T cd04890 10 MNGEVGFLRKIFEILEKHGISVDLIPTS------ENSVTLYLDDSLLPKKLKRLLAELE 62 (62)
T ss_pred cCcccCHHHHHHHHHHHcCCeEEEEecC------CCEEEEEEehhhhhHHHHHHHHhhC
Confidence 3477999999999999999999998542 144778888332 57777777663
No 187
>PRK09977 putative Mg(2+) transport ATPase; Provisional
Probab=76.71 E-value=12 Score=40.00 Aligned_cols=67 Identities=10% Similarity=0.101 Sum_probs=50.2
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeeec
Q 002985 775 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWST 845 (861)
Q Consensus 775 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~Vs~ 845 (861)
+.|++.+. -+.++.+.+.+.++.+.+++.+...+. ..+.+++. .+......++++|+++++|.+|+.
T Consensus 147 ~~i~~~~~--~~~~i~~~l~~~~i~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~V~~v~~ 214 (215)
T PRK09977 147 LQLTLVNG--NVVSMLDWFKQQKIKTDLVSLQENEDH--EVVAIDITLHATTSIEDLYRLLKGIAGVKGVSI 214 (215)
T ss_pred EEEEEccc--cHHHHHHHHHHcCceEEEEEEEecCCC--cEEEEEEEECCCCCHHHHHHHHhcCCCceEEEe
Confidence 45554333 368888999999999999988744322 34666666 667788899999999999998863
No 188
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=76.62 E-value=9.8 Score=30.62 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=35.5
Q ss_pred ccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHH
Q 002985 781 DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACS 832 (861)
Q Consensus 781 DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~ 832 (861)
+++|++++|.+.+++.++++..+.... ....+.|++. .+.+.+.+.+.
T Consensus 12 ~~~~~~~~i~~~l~~~~i~v~~i~~~~----~~~~i~~~v~~~~~~~~~~~l~ 60 (65)
T cd04892 12 GTPGVAARIFSALAEAGINIIMISQGS----SEVNISFVVDEDDADKAVKALH 60 (65)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEcCC----CceeEEEEEeHHHHHHHHHHHH
Confidence 789999999999999999998886531 1255778888 56555544443
No 189
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=76.59 E-value=2.6 Score=48.25 Aligned_cols=61 Identities=25% Similarity=0.239 Sum_probs=48.2
Q ss_pred ceeeecC--C-CceEecCCCCcHHHHHHhhccccccceEEEEE-----------------CCE--ecCCCccCCCCCeEE
Q 002985 540 RVFVFTP--R-GEIKNLPKGATVVDYAYMIHTEIGNKMVAAKV-----------------NGN--LVSPTHVLANAEVVE 597 (861)
Q Consensus 540 ~I~VftP--~-G~i~~lp~gaT~lDfAy~iht~ig~~~~~akV-----------------ng~--~v~l~~~L~~gd~Ve 597 (861)
-++-||- + =+.+.+++|+|+.+.|-.||||+-+..+.|.| -|+ +-.-+|.+++||++.
T Consensus 284 L~sFfT~g~~EvRaWti~~G~~Ap~AAG~IHsDfekgFIrAEV~~yddl~~~gs~~~~k~~Gk~r~eGK~YivqDGDIi~ 363 (368)
T TIGR00092 284 LSFFFTGGKEEVRAWTRKGGWAAPQAAGIIHTDFETGFIAAEVISWDDFIYKKSSQGAKKGGLMRLEGKYYVVDDGDVLF 363 (368)
T ss_pred eeEEEcCCCceeEEeecCCCCchhHhcCCcccccccCceEEEEecHHHHHHcCCHHHHHhcCchhhcCCeEEeeCCeEEE
Confidence 5566663 3 26899999999999999999999999999988 121 334478899999998
Q ss_pred EEe
Q 002985 598 IIT 600 (861)
Q Consensus 598 Iit 600 (861)
+-.
T Consensus 364 f~f 366 (368)
T TIGR00092 364 FAF 366 (368)
T ss_pred Eec
Confidence 854
No 190
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=75.68 E-value=1.4 Score=39.68 Aligned_cols=37 Identities=24% Similarity=0.168 Sum_probs=27.6
Q ss_pred CCCccchHHHHHHHHHHcC------CCHHHHHHHhhccccccC
Q 002985 168 GEPFIIHPVEVARILGELE------LDWESIAAGLLHDTVEDT 204 (861)
Q Consensus 168 GePYi~Hpl~VA~ILa~l~------lD~~ti~AALLHDvvEDt 204 (861)
+++.+.|.+.|+.+...+. .......||||||+-.-.
T Consensus 2 ~~~~~~H~~~v~~~~~~l~~~~~~~~~~~~~~a~LlHDig~~~ 44 (124)
T smart00471 2 DYHVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKPG 44 (124)
T ss_pred CchHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHcccCcc
Confidence 4677899999999876443 234578999999997543
No 191
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=75.54 E-value=9.5 Score=31.00 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=37.4
Q ss_pred eccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHH
Q 002985 780 IDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSS 833 (861)
Q Consensus 780 ~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~ 833 (861)
.+.+|++++|.+.+++.++++..++.. . ..+.|+|. .|.+.+.+++.+
T Consensus 11 ~~~~~~~~~i~~~L~~~~i~v~~i~~s---~---~~is~~v~~~d~~~~~~~l~~ 59 (63)
T cd04936 11 RSHPGVAAKMFEALAEAGINIEMISTS---E---IKISCLIDEDDAEKAVRALHE 59 (63)
T ss_pred CCCccHHHHHHHHHHHCCCcEEEEEcc---C---ceEEEEEeHHHHHHHHHHHHH
Confidence 467899999999999999999888632 1 45779998 777776666543
No 192
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=75.26 E-value=11 Score=31.79 Aligned_cols=51 Identities=22% Similarity=0.322 Sum_probs=35.9
Q ss_pred EEEEE---eccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHH
Q 002985 775 FSVVC---IDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNAC 831 (861)
Q Consensus 775 I~V~a---~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~ 831 (861)
|.|.+ .+.+|+++++.++|++.++||..+.+. -..+.|.|. .+.+...+.+
T Consensus 4 isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~~S------e~~is~~v~~~~~~~av~~L 58 (64)
T cd04937 4 VTIIGSRIRGVPGVMAKIVGALSKEGIEILQTADS------HTTISCLVSEDDVKEAVNAL 58 (64)
T ss_pred EEEECCCccCCcCHHHHHHHHHHHCCCCEEEEEcC------ccEEEEEEcHHHHHHHHHHH
Confidence 45544 378999999999999999999766531 244677777 5555544443
No 193
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=74.98 E-value=12 Score=32.12 Aligned_cols=58 Identities=19% Similarity=0.222 Sum_probs=42.5
Q ss_pred EEEEEEe-ccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccc
Q 002985 774 WFSVVCI-DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLI 837 (861)
Q Consensus 774 ~I~V~a~-DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I 837 (861)
.++|... |.+|.+++|.+.|++.++||.-++.. . . .+.|+|. .|.+....++...+--
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI~~~-~--~---~isFtv~~~d~~~~~~il~~~~~~ 62 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLINVS-P--E---EVIFTVDGEVAEKAVDILEKMGLD 62 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEEEec-C--C---CEEEEEchhhHHHHHHHHHHcCCc
Confidence 3445433 66899999999999999999988433 1 1 4889999 7787777776665433
No 194
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=74.21 E-value=11 Score=29.54 Aligned_cols=43 Identities=23% Similarity=0.342 Sum_probs=32.0
Q ss_pred ccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHH
Q 002985 781 DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESL 827 (861)
Q Consensus 781 DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L 827 (861)
+.+|.+++|.++|++.+++|..+..... ...+.|.+. .+.+.+
T Consensus 12 ~~~~~~~~i~~~l~~~~i~i~~i~~~~~----~~~~s~~v~~~~~~~~ 55 (60)
T cd04868 12 GTPGVAAKIFSALAEAGINVDMISQSES----EVNISFTVDESDLEKA 55 (60)
T ss_pred CCCCHHHHHHHHHHHCCCcEEEEEcCCC----cEEEEEEEeHHHHHHH
Confidence 4789999999999999999998865421 244678887 544443
No 195
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=73.61 E-value=8.1 Score=34.40 Aligned_cols=46 Identities=24% Similarity=0.234 Sum_probs=32.1
Q ss_pred CCCcHHHHHHhh---ccc----cccceEEEEECCEecCCCccCCCCCeEEEEe
Q 002985 555 KGATVVDYAYMI---HTE----IGNKMVAAKVNGNLVSPTHVLANAEVVEIIT 600 (861)
Q Consensus 555 ~gaT~lDfAy~i---ht~----ig~~~~~akVng~~v~l~~~L~~gd~VeIit 600 (861)
.|+|+.|+--.+ |+. +...-+..-||++.++++++|++||.|.|+.
T Consensus 24 ~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~~~~l~dgDeVai~P 76 (81)
T PRK11130 24 DFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFP 76 (81)
T ss_pred CCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCCCCCCCCCCEEEEeC
Confidence 367777764444 221 1122234668999999999999999999985
No 196
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=71.91 E-value=1.2 Score=51.66 Aligned_cols=56 Identities=25% Similarity=0.337 Sum_probs=48.6
Q ss_pred cCCCceEecCC-CCcHHHHHHhhccccccceEEEEECCEecCCCccCCCCCeEEEEecC
Q 002985 545 TPRGEIKNLPK-GATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYN 602 (861)
Q Consensus 545 tP~G~i~~lp~-gaT~lDfAy~iht~ig~~~~~akVng~~v~l~~~L~~gd~VeIit~~ 602 (861)
.|+|.+++.-. +.||.|+|-. ...+++.++.++|||.+.+|+.+|+..- +|+++-.
T Consensus 5 Lpdg~~~~~~~w~ttp~~ia~~-s~~la~~~~~~~vn~~~~Dl~rp~e~~~-lell~f~ 61 (560)
T KOG1637|consen 5 LPDGKVVEGVSWETTPYDIACQ-SKGLADDAVIAKVNGVLWDLDRPLEGDC-LELLKFD 61 (560)
T ss_pred cCCcceeeeeeccCChhHHhhh-ccchhhhhHHHhhcCceeccCCcchhhH-HHHccCC
Confidence 89998877665 7899999999 8889999999999999999999997555 8887764
No 197
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=71.84 E-value=15 Score=30.18 Aligned_cols=48 Identities=19% Similarity=0.165 Sum_probs=35.8
Q ss_pred ccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHH
Q 002985 781 DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACS 832 (861)
Q Consensus 781 DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~ 832 (861)
+++|++++|.+.|++.++||.-+..... ...+.|+|. .|.+.+.+.+.
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~q~~s----~~~isf~i~~~~~~~~~~~Lh 61 (66)
T cd04924 13 GTPGVAGRVFGALGKAGINVIMISQGSS----EYNISFVVAEDDGWAAVKAVH 61 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCc----cceEEEEEeHHHHHHHHHHHH
Confidence 6789999999999999999988864321 145778888 66666555543
No 198
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=71.82 E-value=11 Score=32.98 Aligned_cols=52 Identities=12% Similarity=0.126 Sum_probs=41.7
Q ss_pred EeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCH----HHHHHHHHHhcc
Q 002985 779 CIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNL----ESLVNACSSVDL 836 (861)
Q Consensus 779 a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~----~~L~~l~~~L~~ 836 (861)
..+.+|++++|.++|++.++|+..+.+. ...+.|.|. .+. ..|..+++.|.+
T Consensus 11 l~~~~g~~~~if~~L~~~~I~v~~i~~s------~~~is~~v~~~~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 11 MLGAHGFLAKVFEIFAKHGLSVDLISTS------EVSVSLTLDPTKNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEEcC------CcEEEEEEEchhhccchHHHHHHHHHHHh
Confidence 3677999999999999999999888532 145788888 553 588888888888
No 199
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=71.33 E-value=10 Score=30.78 Aligned_cols=48 Identities=23% Similarity=0.246 Sum_probs=36.7
Q ss_pred eccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHH
Q 002985 780 IDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSS 833 (861)
Q Consensus 780 ~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~ 833 (861)
.+.+|++++|.+.|++.++++..++.. + ..+.|.|. .+.+.+.+++.+
T Consensus 11 ~~~~~~~~~i~~~L~~~~i~v~~i~~s---~---~~is~~v~~~~~~~~~~~l~~ 59 (63)
T cd04923 11 RSHPGVAAKMFKALAEAGINIEMISTS---E---IKISCLVDEDDAEKAVRALHE 59 (63)
T ss_pred CCCccHHHHHHHHHHHCCCCEEEEEcc---C---CeEEEEEeHHHHHHHHHHHHH
Confidence 467899999999999999999888642 1 44778888 676666555543
No 200
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=71.11 E-value=12 Score=30.91 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=34.7
Q ss_pred eccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHH
Q 002985 780 IDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNA 830 (861)
Q Consensus 780 ~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l 830 (861)
.+++|++++|.++|++.++++..+.... ....+.|.|. .+.+.+.+.
T Consensus 12 ~~~~~~~~~i~~~l~~~~I~v~~i~~~~----s~~~is~~v~~~~~~~~~~~ 59 (66)
T cd04922 12 AGTPGVAATFFSALAKANVNIRAIAQGS----SERNISAVIDEDDATKALRA 59 (66)
T ss_pred CCCccHHHHHHHHHHHCCCCEEEEEecC----cccEEEEEEeHHHHHHHHHH
Confidence 4789999999999999999998885421 1256788888 555544433
No 201
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=70.98 E-value=2 Score=46.70 Aligned_cols=62 Identities=32% Similarity=0.462 Sum_probs=48.7
Q ss_pred Cceeeec-CCCc------eEecCC-CCcHHHHHHhhccccccceEEEEE-------CCEecCCCccCCCCCeEEEEe
Q 002985 539 SRVFVFT-PRGE------IKNLPK-GATVVDYAYMIHTEIGNKMVAAKV-------NGNLVSPTHVLANAEVVEIIT 600 (861)
Q Consensus 539 ~~I~Vft-P~G~------i~~lp~-gaT~lDfAy~iht~ig~~~~~akV-------ng~~v~l~~~L~~gd~VeIit 600 (861)
+-+.+|| |+|. ...|+. -.|+.||--.||..+-.....|.| |.+.|.+++.|++.|+|.|+.
T Consensus 281 ~LvriYtkPKgq~PDy~~pVvLs~~~~sv~dfc~~ih~~~~~~fk~alvwg~s~kh~pq~vg~~h~l~dedvv~ivk 357 (358)
T KOG1487|consen 281 KLVRIYTKPKGQPPDYTSPVVLSSERRSVEDFCNKIHKSILKQFKYALVWGSSVKHNPQRVGKEHVLEDEDVVQIVK 357 (358)
T ss_pred hheEEecCCCCCCCCCCCCceecCCcccHHHHHHHHHHHHHHhhhhheEeccccCcChhhcchhheeccchhhhhcc
Confidence 3456777 7774 444555 459999999999999877666555 778899999999999999974
No 202
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=69.93 E-value=13 Score=30.81 Aligned_cols=49 Identities=14% Similarity=0.069 Sum_probs=36.0
Q ss_pred eccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHH
Q 002985 780 IDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACS 832 (861)
Q Consensus 780 ~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~ 832 (861)
.+++|++++|.++|++.++||..+...+ ....+.|.|. .+.+.+.+.+.
T Consensus 12 ~~~~~~~~~if~~L~~~~I~v~~i~q~~----s~~~isf~v~~~~~~~a~~~lh 61 (66)
T cd04919 12 KNMIGIAGRMFTTLADHRINIEMISQGA----SEINISCVIDEKDAVKALNIIH 61 (66)
T ss_pred CCCcCHHHHHHHHHHHCCCCEEEEEecC----ccceEEEEEeHHHHHHHHHHHH
Confidence 3689999999999999999998885422 1266788888 66555544443
No 203
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=69.70 E-value=18 Score=29.81 Aligned_cols=49 Identities=22% Similarity=0.241 Sum_probs=36.6
Q ss_pred eccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHH
Q 002985 780 IDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACS 832 (861)
Q Consensus 780 ~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~ 832 (861)
.+++|+++.|.+.|++.++++..+..... ...+.|+|. .|...+.+++.
T Consensus 12 ~~~~~~~~~i~~~L~~~~i~v~~i~~~~s----~~~isf~v~~~d~~~~~~~lh 61 (66)
T cd04916 12 KNTVGVSARATAALAKAGINIRMINQGSS----EISIMIGVHNEDADKAVKAIY 61 (66)
T ss_pred CCCccHHHHHHHHHHHCCCCEEEEEecCc----ccEEEEEEeHHHHHHHHHHHH
Confidence 36799999999999999999988864321 155778888 66666655544
No 204
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=69.40 E-value=25 Score=29.76 Aligned_cols=57 Identities=21% Similarity=0.292 Sum_probs=42.9
Q ss_pred cHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHH-hccccCeeeeec
Q 002985 784 GIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSS-VDLILGVLGWST 845 (861)
Q Consensus 784 GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~-L~~I~gV~~Vs~ 845 (861)
.-+.++...|++. =+|..+...+ |.+.+.+.+. .|.++|..++.. |.+++||.++.+
T Consensus 10 ~~~~~~~~~l~~~-p~V~~~~~vt----G~~d~~~~v~~~d~~~l~~~i~~~l~~~~gV~~~~t 68 (74)
T PF01037_consen 10 DAYDEFAEALAEI-PEVVECYSVT----GEYDLILKVRARDMEELEEFIREKLRSIPGVRRTET 68 (74)
T ss_dssp THHHHHHHHHHTS-TTEEEEEEES----SSSSEEEEEEESSHHHHHHHHHHTHHTSTTEEEEEE
T ss_pred chHHHHHHHHHcC-CCEEEEEEEe----CCCCEEEEEEECCHHHHHHHHHHHhhcCCCEEEEEE
Confidence 4588888888875 3566665542 2344566666 799999999999 999999998764
No 205
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=69.29 E-value=4.4 Score=41.12 Aligned_cols=46 Identities=33% Similarity=0.436 Sum_probs=34.5
Q ss_pred HHHHHHHhhcCCCcccCCCcc--chHHHHHHHHHHcCCCHHHHHHHhhccc
Q 002985 152 ALMLAFEAHDGQKRRSGEPFI--IHPVEVARILGELELDWESIAAGLLHDT 200 (861)
Q Consensus 152 A~~~A~~aH~gQ~RksGePYi--~Hpl~VA~ILa~l~lD~~ti~AALLHDv 200 (861)
+..|. .|..+. -+|+|.- .|.++-|.....-|.|.+.|+||||||+
T Consensus 13 ~~~F~--~~g~e~-y~ge~VTq~eHaLQ~AtlAerdGa~~~lVaaALLHDi 60 (186)
T COG4341 13 AYLFL--RHGDEG-YSGEPVTQLEHALQCATLAERDGADTALVAAALLHDI 60 (186)
T ss_pred HHHHH--Hccccc-cccCcchhhhhHHHHhHHHHhcCCcHHHHHHHHHHhH
Confidence 44554 344333 4778754 7999999877778999999999999975
No 206
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=69.26 E-value=4.9 Score=41.18 Aligned_cols=67 Identities=16% Similarity=0.167 Sum_probs=46.4
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCe
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGV 840 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV 840 (861)
-|.+.+.||+|++..|+.++++.|.|+..-.+..-.+.-.++|.+... ..+..|+..+..+.+-.|.
T Consensus 7 vItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisgs~dav~~le~~l~~l~~~~~L 74 (176)
T COG2716 7 VITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISGSWDAVTLLEATLPLLGAELDL 74 (176)
T ss_pred EEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEeeCHHHHHHHHHHhhcccccCCe
Confidence 378899999999999999999999999765543222212344555555 6666666666666664444
No 207
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=68.79 E-value=2 Score=39.29 Aligned_cols=31 Identities=35% Similarity=0.378 Sum_probs=22.6
Q ss_pred cchHHHHHHHHHHc----C--CCHH-HHHHHhhccccc
Q 002985 172 IIHPVEVARILGEL----E--LDWE-SIAAGLLHDTVE 202 (861)
Q Consensus 172 i~Hpl~VA~ILa~l----~--lD~~-ti~AALLHDvvE 202 (861)
+.|.+.|+.+...+ + .+.+ ..+||||||+=.
T Consensus 2 ~~Hs~~V~~~a~~l~~~~~~~~~~~~l~~aaLlHDiGk 39 (122)
T PF01966_consen 2 FEHSLRVAELAERLADRLGLEEDRELLRIAALLHDIGK 39 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTH
T ss_pred hhHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCC
Confidence 57999999887654 3 2323 579999999864
No 208
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=67.71 E-value=6.3 Score=42.90 Aligned_cols=52 Identities=33% Similarity=0.399 Sum_probs=46.4
Q ss_pred ceEecCCCCcHHHHHHhhccccccceEEEEECC-------EecCCCccCCCCCeEEEEe
Q 002985 549 EIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNG-------NLVSPTHVLANAEVVEIIT 600 (861)
Q Consensus 549 ~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng-------~~v~l~~~L~~gd~VeIit 600 (861)
+.+-|..|+|+-|+--+||..+......|.|=| +.|.|.+.+++.|+|.|+.
T Consensus 305 d~~vlr~g~tve~~C~~iHr~l~~qfkyAlVWGtSakhsPQrvgl~h~~~dEdvvqi~~ 363 (364)
T KOG1486|consen 305 DPLVLRKGSTVEDVCHRIHRTLAAQFKYALVWGTSAKHSPQRVGLGHTLEDEDVVQIVK 363 (364)
T ss_pred CceEEeCCCcHHHHHHHHHHHHHHhhceeeEeccccccCcceeccccccccccceeeec
Confidence 678888999999999999999999988888855 5788999999999999873
No 209
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.99 E-value=16 Score=32.67 Aligned_cols=52 Identities=13% Similarity=0.353 Sum_probs=39.3
Q ss_pred EeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCH-------HHHHHHHHHhcc
Q 002985 779 CIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNL-------ESLVNACSSVDL 836 (861)
Q Consensus 779 a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~-------~~L~~l~~~L~~ 836 (861)
..+.+|.+++|-+++++.++||.-+... . ..+.|+|. .+. +.|..+.+.+++
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~qs-~-----~sISftV~~sd~~~~~~~~~~l~~~~~~~~~ 70 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVATS-E-----VSISLTLDPSKLWSRELIQQELDHVVEELEK 70 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEec-C-----CEEEEEEEhhhhhhhhhHHHHHHHHHHHHHH
Confidence 4678999999999999999999988642 1 55889999 665 455555555544
No 210
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=64.85 E-value=41 Score=31.00 Aligned_cols=69 Identities=9% Similarity=-0.039 Sum_probs=54.6
Q ss_pred EEEEEEeccccHHHHHHHHHHhC--CcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeee
Q 002985 774 WFSVVCIDRRGIMADVTTALATV--GVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLG 842 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~--~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~ 842 (861)
.+.|.+..++++--+|-.++... |--.-.++.....+++...+.++|. .|.|||+.+-..|+++++|.=
T Consensus 17 ~~KVmG~a~~~l~~~vv~vvqr~ap~~~~~~~~~k~SSkGnY~svsI~i~A~~~EQ~e~ly~eL~~~~~Vkm 88 (90)
T COG2921 17 TYKVMGAAGPELEDQVVEVVQRHAPGDYTPRVSWKPSSKGNYLSVSITIRATNIEQVEALYRELRKHEIVKM 88 (90)
T ss_pred eeeehcccchhHHHHHHHHHHHHCCcccCceeeeccCCCCceEEEEEEEEECCHHHHHHHHHHHhhCCceEE
Confidence 68999999999999999999764 4445556555433334556778888 899999999999999999863
No 211
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=63.37 E-value=21 Score=30.48 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=35.4
Q ss_pred ccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHH
Q 002985 781 DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACS 832 (861)
Q Consensus 781 DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~ 832 (861)
.++|+++++.++|++.++|+..++... .-..+.|-|. .|.+...+.+.
T Consensus 13 ~~~gv~~ki~~~L~~~~I~v~~i~~~~----s~~~is~~V~~~~~~~av~~Lh 61 (66)
T cd04915 13 STPGVLARGLAALAEAGIEPIAAHQSM----RNVDVQFVVDRDDYDNAIKALH 61 (66)
T ss_pred CcchHHHHHHHHHHHCCCCEEEEEecC----CeeEEEEEEEHHHHHHHHHHHH
Confidence 368999999999999999998886542 2245677777 66666555543
No 212
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.61 E-value=34 Score=30.67 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=48.2
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccc
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLI 837 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I 837 (861)
-+.|+.-.|||.|.+..+.|.. +.||+..+-... +...+.+.+-|+ .+. ++..++++|++.
T Consensus 3 ~~~v~iPErpGal~~Fl~~l~p-~~~ITeF~YR~~-~~~~a~vlvGi~~~~~-~~~~l~~~l~~~ 64 (81)
T cd04907 3 LFRFEFPERPGALKKFLNELLP-KWNITLFHYRNQ-GSDYGRVLVGIQVPDA-DLDELKERLDAL 64 (81)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC-CCeEeEEEEecC-CCCceeEEEEEEeChH-HHHHHHHHHHHc
Confidence 3677888999999999999953 789999887643 446788888888 655 888888888764
No 213
>PRK14707 hypothetical protein; Provisional
Probab=61.71 E-value=31 Score=47.12 Aligned_cols=103 Identities=14% Similarity=0.119 Sum_probs=74.8
Q ss_pred cChhHHHHHHHhc---CCC----cccccceeeEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhh-ccccCCCccccccccC
Q 002985 354 KEPYSIYKAVLKS---RGS----INEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVH-GIWTPIPRAMKDYIAT 425 (861)
Q Consensus 354 K~~ySI~~Km~rk---~~~----~~ei~Dl~giRIIv~~~~~~~~~~~~~~~~dCY~vlg~vh-~~~~pip~~~kDyIa~ 425 (861)
|++-||.+|+.+. +++ +..|.|.+-.=||++. ..|+...+.+...+. .-|+.+ ++|++-..
T Consensus 2544 Ks~~Si~RKI~~~~~~~ls~eqAaarVrDalRYtviLp~---------e~Fv~~v~~~~~~L~~~G~~~~--rvKNtw~~ 2612 (2710)
T PRK14707 2544 KSLASIKDKIRRHLRAGMTAEQATQSVGDALRYALELPS---------EGFVAKVQAAQDALRRQGMTCV--NLQNYFTS 2612 (2710)
T ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHhhhheeEEEEcCc---------chHHHHHHHHHHHHHhcCCeEE--EeeccccC
Confidence 9999999999754 333 4578887766666654 458888889988885 457766 78888754
Q ss_pred CCCCCccceEEEEeccCCccceeEEEEEechhHHHHHHHHHHHhhcccc
Q 002985 426 PKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRV 474 (861)
Q Consensus 426 PK~NGYqSLHt~V~~~~~~~~~~vEIQIRT~~Mh~~AE~G~aahw~YK~ 474 (861)
| .+.|..+-+++.... |..+|||.=|..--..-+. .|=.|+.
T Consensus 2613 ~-d~tY~GvN~~~r~~~---g~~FEIQFHT~~Sf~~K~~---tH~lYek 2654 (2710)
T PRK14707 2613 G-DGTYRGINASFTDAE---GYAFEVQFHTAESFNAKAQ---THLSYKR 2654 (2710)
T ss_pred C-CCcccceeeeEEcCC---CCeEEEEeccHHHHHHHHH---hHHHHHh
Confidence 3 377999999996433 3589999999876554443 4556664
No 214
>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=61.23 E-value=32 Score=40.37 Aligned_cols=66 Identities=9% Similarity=-0.064 Sum_probs=48.8
Q ss_pred EEEEEecc-ccHHHHHHHHHHhCCcceeeeEEeEecCC----cEEEEEEEEEcCHHHHHHHHHHhccccCe
Q 002985 775 FSVVCIDR-RGIMADVTTALATVGVTICSCVAEIDRGR----GIAVMLFHVEGNLESLVNACSSVDLILGV 840 (861)
Q Consensus 775 I~V~a~DR-~GlLadItsvIa~~~iNI~sv~~~~~~~~----~~a~m~ftVE~d~~~L~~l~~~L~~I~gV 840 (861)
+.+...++ .|-|+++-.++.+.+|||..+.+...+.. ....+.++++.+..+|..++..|++...+
T Consensus 40 ~~~~~~~~~~g~L~~~l~~f~~~~inl~hiEsr~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~ 110 (457)
T TIGR01269 40 NQFYIRTKEISSLHRILKYIETFKLNLVHFETRPTRTLSNADVDYSCLITLEANEINMSLLIESLRGNSFI 110 (457)
T ss_pred EEEEeccCcchhHHHHHHHHHHcCCcEEEeecCCccccCCCCCceEEEEEEeccHhhHHHHHHHHHhhhcc
Confidence 34444444 99999999999999999999998764322 23556666666668899999999986544
No 215
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=59.68 E-value=8.5 Score=41.08 Aligned_cols=37 Identities=30% Similarity=0.349 Sum_probs=29.4
Q ss_pred cCCCccchHHHHHHHHH----HcCCCHHH-HHHHhhcccccc
Q 002985 167 SGEPFIIHPVEVARILG----ELELDWES-IAAGLLHDTVED 203 (861)
Q Consensus 167 sGePYi~Hpl~VA~ILa----~l~lD~~t-i~AALLHDvvED 203 (861)
+|..-+.|.++|+.+.. +.|.|.+. ..||||||+.--
T Consensus 33 ~~~~~l~H~~~Va~lA~~Ia~~~g~D~~l~~~aaLLHDIg~~ 74 (222)
T COG1418 33 YGQHVLEHSLRVAYLAYRIAEEEGVDPDLALRAALLHDIGKA 74 (222)
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccc
Confidence 56677999999998653 56889885 689999998743
No 216
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=59.65 E-value=11 Score=31.51 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=20.2
Q ss_pred EEEECCEec-CCCccCCCCCeEEE
Q 002985 576 AAKVNGNLV-SPTHVLANAEVVEI 598 (861)
Q Consensus 576 ~akVng~~v-~l~~~L~~gd~VeI 598 (861)
...|||+.+ ..++.|+.||.|+|
T Consensus 35 ~V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 35 EVLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred CEEECCEEccCCCCCCCCCCEEEe
Confidence 467899998 77999999999986
No 217
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=59.20 E-value=5.1 Score=36.72 Aligned_cols=35 Identities=26% Similarity=0.122 Sum_probs=25.2
Q ss_pred CccchHHHHHHHHHHcCC--------CHHHHHHHhhccccccC
Q 002985 170 PFIIHPVEVARILGELEL--------DWESIAAGLLHDTVEDT 204 (861)
Q Consensus 170 PYi~Hpl~VA~ILa~l~l--------D~~ti~AALLHDvvEDt 204 (861)
+.+.|.+.|+.+...+.. .....+||||||+-+..
T Consensus 2 ~~~~Hs~~v~~~~~~~~~~~~~~~~~~~~l~~aaLlHDig~~~ 44 (145)
T cd00077 2 HRFEHSLRVAQLARRLAEELGLSEEDIELLRLAALLHDIGKPG 44 (145)
T ss_pred chHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhcCCcc
Confidence 456799999988765421 23468999999998643
No 218
>PRK06635 aspartate kinase; Reviewed
Probab=59.15 E-value=21 Score=41.05 Aligned_cols=55 Identities=25% Similarity=0.361 Sum_probs=42.0
Q ss_pred EeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHh
Q 002985 779 CIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSV 834 (861)
Q Consensus 779 a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L 834 (861)
..+++|.+++|.++|++.++||..++.... .++...+.|.|. .+.+...+++.++
T Consensus 270 ~~~~~g~l~~i~~~L~~~~I~i~~is~s~~-~~~~~~is~~v~~~~~~~a~~~L~~~ 325 (404)
T PRK06635 270 VPDKPGIAAQIFGALAEANINVDMIVQNVS-EDGKTDITFTVPRDDLEKALELLEEV 325 (404)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEEecCC-CCCceeEEEEEcHHHHHHHHHHHHHH
Confidence 578999999999999999999998865422 223577888887 6666666666664
No 219
>PRK01002 nickel responsive regulator; Provisional
Probab=57.11 E-value=1e+02 Score=30.74 Aligned_cols=83 Identities=17% Similarity=0.223 Sum_probs=58.8
Q ss_pred ccCCCC-CceeEEEEEEEecc--ccHHHHHHHHHHhCCcceeee-EEeEecCCcEEEEEEEEEcCHHHHHHHHHHhcccc
Q 002985 763 TWHNLE-GHSIQWFSVVCIDR--RGIMADVTTALATVGVTICSC-VAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLIL 838 (861)
Q Consensus 763 ~W~~~~-~~~~a~I~V~a~DR--~GlLadItsvIa~~~iNI~sv-~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~ 838 (861)
.|.... +.-...|.| ..|. .++-..++++..+..-.|.+- .+.- +.......|.|+++.+.+..+..+|..++
T Consensus 47 ~~~~~~~~~~~GvIti-vydh~~~~l~~~l~~iqH~~~~~Iiss~Hvhl--d~~~ClEvivv~G~~~~I~~l~~kL~~lk 123 (141)
T PRK01002 47 KWMNSMEGERVGTISV-IYDHHSTGVMEKLTDIQHDYSDLIVASLHIHL--DHDHCLEVIVVRGDAKEIRELTEKLMALK 123 (141)
T ss_pred hhccCCCCcEEEEEEE-EEeccchhHHHHHHHHHHhccCeEEEeeeeec--CCCcEEEEEEEEcCHHHHHHHHHHHhCcC
Confidence 675442 222444555 5555 478899999998876656444 3332 33456667777799999999999999999
Q ss_pred Ceeeeecccc
Q 002985 839 GVLGWSTGCS 848 (861)
Q Consensus 839 gV~~Vs~g~~ 848 (861)
||..+..-+.
T Consensus 124 GV~~~kl~~~ 133 (141)
T PRK01002 124 GVKHVKLTTM 133 (141)
T ss_pred CeeEEEEEEe
Confidence 9999887665
No 220
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=56.62 E-value=16 Score=39.28 Aligned_cols=50 Identities=24% Similarity=0.088 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHhhcCCCcccCCCccchHHHHHHHHHH--------cCCCHHH-HHHHhhcccc
Q 002985 145 ELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGE--------LELDWES-IAAGLLHDTV 201 (861)
Q Consensus 145 ~~~~l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa~--------l~lD~~t-i~AALLHDvv 201 (861)
|-.++++|.+++.+.... .-+.|.+.|...... ++.|.+. .+||||||+-
T Consensus 37 dt~l~~~a~~~~~~~l~~-------~~~~Hs~RV~~~a~~ia~~e~~~~~~D~evl~lAALLHDIG 95 (228)
T TIGR03401 37 DTPLVKFAQEYAKARLPP-------ETYNHSLRVYYYGLAIARDQFPEWDLSDETWFLTCLLHDIG 95 (228)
T ss_pred ChHHHHHHHHHHHhhCCH-------hhhHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhc
Confidence 556678888888776442 336799998854321 3677765 5899999986
No 221
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.71 E-value=35 Score=28.80 Aligned_cols=47 Identities=19% Similarity=0.115 Sum_probs=33.9
Q ss_pred ccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHH
Q 002985 781 DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNAC 831 (861)
Q Consensus 781 DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~ 831 (861)
..+|+++++.++|++.++||..+.-.+ .-..+.|.|. .|.+.+.+.+
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~----s~~sis~~v~~~~~~~av~~L 59 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGA----SKVNISLIVNDSEAEGCVQAL 59 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecC----ccceEEEEEeHHHHHHHHHHH
Confidence 468999999999999999998876322 2245677777 6665555444
No 222
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=54.37 E-value=45 Score=32.24 Aligned_cols=65 Identities=11% Similarity=0.176 Sum_probs=48.7
Q ss_pred eccccHHHHHHHHHHhCCcceeeeEEeEe-cCCcEEEEEEEEE--cCHHHHHHHHHHhccccCeeeee
Q 002985 780 IDRRGIMADVTTALATVGVTICSCVAEID-RGRGIAVMLFHVE--GNLESLVNACSSVDLILGVLGWS 844 (861)
Q Consensus 780 ~DR~GlLadItsvIa~~~iNI~sv~~~~~-~~~~~a~m~ftVE--~d~~~L~~l~~~L~~I~gV~~Vs 844 (861)
.+-+.+|.+|...-...|+.+.+++-... ........-|+|+ ++..+|...+..|.+.+.+..|.
T Consensus 50 ~~~~~ll~~l~~~A~~~gv~l~~~~p~~~~~~~~~~~~pv~i~l~G~Y~~l~~Fl~~l~~l~riv~i~ 117 (144)
T PF04350_consen 50 EEIPSLLEDLNRLAKKSGVKLTSFEPGEEEKKEFYIEIPVTISLEGSYHQLLNFLNDLENLPRIVNIE 117 (144)
T ss_dssp GHHHHHHHHHHHHHHHTT-EEEEEEE---EE-SSEEEEEEEEEEEEEHHHHHHHHHHHHTSSS-EEEE
T ss_pred hhHHHHHHHHHHHHHHCCCeEEEeecCcccccCceEEEEEEEEEEeeHHHHHHHHHHHHcCCCeEEEe
Confidence 46678999999999999999999986542 2345566566655 99999999999999999888664
No 223
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=54.21 E-value=21 Score=32.78 Aligned_cols=65 Identities=20% Similarity=0.223 Sum_probs=50.1
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhcccc
Q 002985 772 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLIL 838 (861)
Q Consensus 772 ~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~ 838 (861)
.+-+.|+.-.|||.|....++|.... ||+..+-... +...+.+.+.|+ .+.+++..++.+|++..
T Consensus 10 E~~~~v~~PE~pGal~~F~~~l~~~~-nITeF~YR~~-~~~~a~vlvgi~v~~~~~~~~l~~~L~~~g 75 (91)
T PF00585_consen 10 EALFAVEFPERPGALKRFLDALGPRN-NITEFHYRYS-GDDFARVLVGIEVPDAEDLEELIERLKALG 75 (91)
T ss_dssp EEEEEEE--BSTTHCHHHHHCCSSSE--EEEEEEE-T-TTSCSEEEEEEE-SSTHHHHHHHHHHTSSS
T ss_pred EEEEEEECCCCccHHHHHHHHhCCCc-eEEEEEEcCC-CCCeeeEEEEEEeCCHHHHHHHHHHHHHcC
Confidence 35688999999999999999997543 5888887643 456788888888 88888999999998763
No 224
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=54.12 E-value=11 Score=33.90 Aligned_cols=57 Identities=21% Similarity=0.300 Sum_probs=36.0
Q ss_pred eeecCCCceEecCCCCcHHHHHHhhccccccceE-----------------EEEECCEe-cCC-CccCCCCCeEEE
Q 002985 542 FVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMV-----------------AAKVNGNL-VSP-THVLANAEVVEI 598 (861)
Q Consensus 542 ~VftP~G~i~~lp~gaT~lDfAy~iht~ig~~~~-----------------~akVng~~-v~l-~~~L~~gd~VeI 598 (861)
.-|+=||+.++.++|.|.++++.+.+..+-+.|. -+.|||+. +.- .+++++|..|+-
T Consensus 4 v~i~idG~~v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev~g~~~v~AC~t~v~~GM~V~T 79 (82)
T PF13510_consen 4 VTITIDGKPVEVPPGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLCLVEVDGEPNVRACSTPVEDGMVVET 79 (82)
T ss_dssp EEEEETTEEEEEEET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS-EEEESSEEEEETTT-B--TTEEEE-
T ss_pred EEEEECCEEEEEcCCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceEEEEECCCcceEcccCCCcCCcEEEE
Confidence 3456689999999999999999887555322211 27889987 433 346899988763
No 225
>COG3062 NapD Uncharacterized protein involved in formation of periplasmic nitrate reductase [Inorganic ion transport and metabolism]
Probab=53.97 E-value=57 Score=30.34 Aligned_cols=62 Identities=23% Similarity=0.291 Sum_probs=45.2
Q ss_pred EEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeeec
Q 002985 778 VCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWST 845 (861)
Q Consensus 778 ~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~Vs~ 845 (861)
...-++-.|.+|-+.|... -.+.+... +.. ..+-+.+| .+.+.|-.-|..|+.++||+.|+-
T Consensus 12 Vv~~~pe~l~av~~~L~~i----p~~EV~~~-d~~-GKlVVVie~~~~~~l~~tie~i~nl~gVlav~l 74 (94)
T COG3062 12 VVQAKPERLSAVKTALLAI----PGCEVYGE-DAE-GKLVVVIEAEDSETLLETIESIRNLPGVLAVSL 74 (94)
T ss_pred eeecCHHHHHHHHHHHhcC----CCcEeecc-CCC-ceEEEEEEcCchHHHHHHHHHHhcCCceeEEEE
Confidence 3455778888898888753 23333222 222 45777888 899999999999999999999874
No 226
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=53.82 E-value=29 Score=32.11 Aligned_cols=47 Identities=19% Similarity=0.116 Sum_probs=33.3
Q ss_pred CCCcHHHHHHhh---ccccc----------cceEEEEECCEec----CCCccCCCCCeEEEEec
Q 002985 555 KGATVVDYAYMI---HTEIG----------NKMVAAKVNGNLV----SPTHVLANAEVVEIITY 601 (861)
Q Consensus 555 ~gaT~lDfAy~i---ht~ig----------~~~~~akVng~~v----~l~~~L~~gd~VeIit~ 601 (861)
.|+|+.|+--.+ |+... +.-+-..|||+.+ .++++|++||.|.|+..
T Consensus 27 ~~~tV~dll~~L~~~~~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~ 90 (94)
T cd01764 27 KPVTVGDLLDYVASNLLEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFIST 90 (94)
T ss_pred CCCcHHHHHHHHHHhCchhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECC
Confidence 578888865444 32211 1245688999987 47899999999999863
No 227
>smart00363 S4 S4 RNA-binding domain.
Probab=52.72 E-value=13 Score=29.30 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=21.6
Q ss_pred EEEECCEec-CCCccCCCCCeEEEEe
Q 002985 576 AAKVNGNLV-SPTHVLANAEVVEIIT 600 (861)
Q Consensus 576 ~akVng~~v-~l~~~L~~gd~VeIit 600 (861)
+.+|||+.+ ..+++|..||.|++--
T Consensus 27 ~i~vng~~~~~~~~~l~~gd~i~~~~ 52 (60)
T smart00363 27 RVKVNGKKVTKPSYIVKPGDVISVRG 52 (60)
T ss_pred CEEECCEEecCCCeEeCCCCEEEEcc
Confidence 578999999 8899999999998743
No 228
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=51.81 E-value=50 Score=28.49 Aligned_cols=48 Identities=21% Similarity=0.321 Sum_probs=35.1
Q ss_pred EeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHH
Q 002985 779 CIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNA 830 (861)
Q Consensus 779 a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l 830 (861)
..+++|++++|.++|++.++++..++.... . ..+.|++. .+.+++.+.
T Consensus 11 ~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~-~---~~isf~v~~~d~~~~~~~ 59 (80)
T cd04921 11 MVGVPGIAARIFSALARAGINVILISQASS-E---HSISFVVDESDADKALEA 59 (80)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEEecCC-c---ceEEEEEeHHHHHHHHHH
Confidence 347889999999999999999988865322 1 35678888 666554444
No 229
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=51.59 E-value=18 Score=32.69 Aligned_cols=29 Identities=28% Similarity=0.256 Sum_probs=26.5
Q ss_pred cceEEEEECCEecCCCccCCCCCeEEEEe
Q 002985 572 NKMVAAKVNGNLVSPTHVLANAEVVEIIT 600 (861)
Q Consensus 572 ~~~~~akVng~~v~l~~~L~~gd~VeIit 600 (861)
..++.+.+|...++++++|++||.|-|+.
T Consensus 51 ~~~v~~~~~~~~~~~~t~L~dGDeVa~~P 79 (84)
T COG1977 51 NIVVNAANNEFLVGLDTPLKDGDEVAFFP 79 (84)
T ss_pred cceEEeeeceeeccccccCCCCCEEEEeC
Confidence 46788889999999999999999999986
No 230
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.89 E-value=43 Score=28.20 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=32.6
Q ss_pred ccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHH
Q 002985 781 DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACS 832 (861)
Q Consensus 781 DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~ 832 (861)
+.+|+++++.++|++.++++.+..+. ...+.|-|. .|.+.+.+.+.
T Consensus 12 ~~~gv~~~~~~~L~~~~i~~i~~~~s------~~~is~vv~~~d~~~av~~LH 58 (63)
T cd04920 12 SLLHKLGPALEVFGKKPVHLVSQAAN------DLNLTFVVDEDQADGLCARLH 58 (63)
T ss_pred cCccHHHHHHHHHhcCCceEEEEeCC------CCeEEEEEeHHHHHHHHHHHH
Confidence 78999999999999887777555432 244677777 66666555543
No 231
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=48.72 E-value=14 Score=29.32 Aligned_cols=21 Identities=33% Similarity=0.680 Sum_probs=18.9
Q ss_pred EEEECCEecC-CCccCCCCCeE
Q 002985 576 AAKVNGNLVS-PTHVLANAEVV 596 (861)
Q Consensus 576 ~akVng~~v~-l~~~L~~gd~V 596 (861)
+.+|||+.+. .++.++.||+|
T Consensus 27 ~V~VNg~~v~~~~~~v~~~d~I 48 (48)
T PF01479_consen 27 RVKVNGKVVKDPSYIVKPGDVI 48 (48)
T ss_dssp TEEETTEEESSTTSBESTTEEE
T ss_pred EEEECCEEEcCCCCCCCCcCCC
Confidence 4789999999 99999999986
No 232
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=48.31 E-value=28 Score=37.27 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=41.4
Q ss_pred ecCCCceEecCCCCcHHHHHHhhccccccceE-------------EEEECCEe--c-CCCccCCCCCeEEEE
Q 002985 544 FTPRGEIKNLPKGATVVDYAYMIHTEIGNKMV-------------AAKVNGNL--V-SPTHVLANAEVVEII 599 (861)
Q Consensus 544 ftP~G~i~~lp~gaT~lDfAy~iht~ig~~~~-------------~akVng~~--v-~l~~~L~~gd~VeIi 599 (861)
++-||+.+..|+|.|.+|.|.+.+-.+-+.|. -++|||+. + .=.+++++|..|+--
T Consensus 6 i~idg~~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~g~~~~~~aC~t~v~~Gm~v~t~ 77 (234)
T PRK07569 6 LTIDDQLVSAREGETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEIEGSNKLLPACVTPVAEGMVVQTN 77 (234)
T ss_pred EEECCEEEEeCCCCHHHHHHHHcCCCCCcCcCCCCCCCCCccCCcEEEECCCCccccCcCCCCCCCCEEEEC
Confidence 44599999999999999999987766655443 26888853 2 445678888877643
No 233
>PF04455 Saccharop_dh_N: LOR/SDH bifunctional enzyme conserved region ; InterPro: IPR007545 Lysine-oxoglutarate reductase/Saccharopine dehydrogenase (LOR/SDH) is a bifunctional enzyme. This conserved region is commonly found immediately N-terminal to saccharopine dehydrogenase conserved region (IPR005097 from INTERPRO) in eukaryotes [, ].; PDB: 3C2Q_B 3MGJ_A.
Probab=47.98 E-value=65 Score=30.56 Aligned_cols=58 Identities=16% Similarity=0.139 Sum_probs=43.3
Q ss_pred cccHHHHHHHHHHhCCcc--eeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCe
Q 002985 782 RRGIMADVTTALATVGVT--ICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGV 840 (861)
Q Consensus 782 R~GlLadItsvIa~~~iN--I~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV 840 (861)
..|+|+.+-..|-+.|.+ |..+++-.. .......++.|. .|.++|.+++.+|.++--+
T Consensus 14 DSgil~~vLD~I~d~GG~F~i~~~~vG~~-~~d~S~a~l~V~a~d~~~L~~Il~~L~~lga~ 74 (103)
T PF04455_consen 14 DSGILNRVLDIIMDMGGDFEILEFDVGKS-KDDTSYARLQVSAPDEEHLDEILDELHQLGAV 74 (103)
T ss_dssp TSSHHHHHHHHHHHTT-EEEEEEEE--SS-TTS-EEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhcCCCEEEEEEEeCCC-CCCceeEEEEEecCCHHHHHHHHHHHHHHcCC
Confidence 479999999999887755 566666533 345677888899 9999999999999976544
No 234
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=47.40 E-value=57 Score=37.51 Aligned_cols=58 Identities=17% Similarity=0.217 Sum_probs=41.6
Q ss_pred EEEEEE---EeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHh
Q 002985 773 QWFSVV---CIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSV 834 (861)
Q Consensus 773 a~I~V~---a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L 834 (861)
+.|.|. ..+++|++++|.++|++.++||..+..... ...+.|.|. .+.+.+.+++.+.
T Consensus 261 a~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s----~~~Is~~V~~~d~~~a~~~L~~~ 322 (401)
T TIGR00656 261 TRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPS----ETSISLTVDETDADEAVRALKDQ 322 (401)
T ss_pred EEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCC----CceEEEEEeHHHHHHHHHHHHHH
Confidence 346665 568899999999999999999988865311 144778887 6666555555543
No 235
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=47.18 E-value=71 Score=26.93 Aligned_cols=61 Identities=15% Similarity=0.214 Sum_probs=43.6
Q ss_pred ceeeecCCCc--eEecCCCCcHHHHHHhhccccccc--eEEEEECCEecCCCcc-----CCCCCeEEEEe
Q 002985 540 RVFVFTPRGE--IKNLPKGATVVDYAYMIHTEIGNK--MVAAKVNGNLVSPTHV-----LANAEVVEIIT 600 (861)
Q Consensus 540 ~I~VftP~G~--i~~lp~gaT~lDfAy~iht~ig~~--~~~akVng~~v~l~~~-----L~~gd~VeIit 600 (861)
.|+|-+++|+ .+.++...|+.|+-..|+...|-. -..-..+|++..-+.. +++|++|.++.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 2 EIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence 4789999987 466778999999988887765532 2334457887665544 68888888763
No 236
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=45.70 E-value=45 Score=28.34 Aligned_cols=50 Identities=12% Similarity=0.050 Sum_probs=40.8
Q ss_pred CCceEecCCCCcHHHHHHhhccccccceEEEEECCEecCCCccCCCCCeEEEEe
Q 002985 547 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIIT 600 (861)
Q Consensus 547 ~G~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~l~~~L~~gd~VeIit 600 (861)
+|+.++...++|.-++.-.+.+ .+--.-+||=...-+..|+.||.|-.|-
T Consensus 6 N~k~~~~~~~~tl~~lr~~~k~----~~DI~I~NGF~~~~d~~L~e~D~v~~Ik 55 (57)
T PF14453_consen 6 NEKEIETEENTTLFELRKESKP----DADIVILNGFPTKEDIELKEGDEVFLIK 55 (57)
T ss_pred CCEEEEcCCCcCHHHHHHhhCC----CCCEEEEcCcccCCccccCCCCEEEEEe
Confidence 5788999999999777655544 4445678999999999999999998874
No 237
>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only]
Probab=45.29 E-value=24 Score=36.17 Aligned_cols=58 Identities=26% Similarity=0.348 Sum_probs=36.1
Q ss_pred CccchHHHHHHHH---H-HcCCCHHH-HHHHhhcccc--------ccCCCCCHHHHHHH-hCHHHHHHHHhh
Q 002985 170 PFIIHPVEVARIL---G-ELELDWES-IAAGLLHDTV--------EDTNVVTFERIEEE-FGATVRRIVEGE 227 (861)
Q Consensus 170 PYi~Hpl~VA~IL---a-~l~lD~~t-i~AALLHDvv--------EDt~~~t~e~I~~~-FG~~Va~LV~gv 227 (861)
..+-|+++|+..+ + ++|-|++. -.+|||||.= |..+..+.+-+++. -.++|++.|.+=
T Consensus 47 ~L~kHcla~eavMr~lARe~gEDEEkw~~~GlLHD~DYe~tqgdpEeHgl~g~eiL~~edv~eeil~ai~~H 118 (212)
T COG2316 47 SLQKHCLAVEAVMRWLAREWGEDEEKWAVTGLLHDFDYELTQGDPEEHGLWGVEILREEDVSEEILDAIMGH 118 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhhhccHHhhcCChhhcCccceehHhhcCCCHHHHHHHHHh
Confidence 3456888776554 3 78999886 5789999861 11111234444443 667787777663
No 238
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=44.89 E-value=19 Score=37.56 Aligned_cols=35 Identities=34% Similarity=0.343 Sum_probs=27.2
Q ss_pred ccchHHHHHHHHHH----cCCCHH-HHHHHhhccccccCC
Q 002985 171 FIIHPVEVARILGE----LELDWE-SIAAGLLHDTVEDTN 205 (861)
Q Consensus 171 Yi~Hpl~VA~ILa~----l~lD~~-ti~AALLHDvvEDt~ 205 (861)
-+.|.+.||+...+ +++|.+ .-+||+|||..-+-+
T Consensus 18 R~~H~l~V~~~A~~LA~~y~~d~~kA~~AgilHD~aK~~p 57 (187)
T COG1713 18 RFEHCLGVAETAIELAEAYGLDPEKAYLAGILHDIAKELP 57 (187)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhCC
Confidence 38899999987543 578876 468999999986554
No 239
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=43.90 E-value=64 Score=27.52 Aligned_cols=62 Identities=13% Similarity=0.087 Sum_probs=44.9
Q ss_pred ceeeecCCCce--EecCCCCcHHHHHHhhccccccce--EEEEECCEecCCCc-----cCCCCCeEEEEec
Q 002985 540 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGNKM--VAAKVNGNLVSPTH-----VLANAEVVEIITY 601 (861)
Q Consensus 540 ~I~VftP~G~i--~~lp~gaT~lDfAy~iht~ig~~~--~~akVng~~v~l~~-----~L~~gd~VeIit~ 601 (861)
.|+|-+++|+. ++++...|+.++-..|+...|-.+ ..-..+|+...-+. -+++|++|.++-.
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~ 72 (76)
T cd01806 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLA 72 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEE
Confidence 47889999976 558889999999888877665432 23345777655443 4799999998764
No 240
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=43.47 E-value=23 Score=30.00 Aligned_cols=32 Identities=41% Similarity=0.538 Sum_probs=22.7
Q ss_pred CccchHHHHHHHHH----HcCCCHH-HHHHHhhcccc
Q 002985 170 PFIIHPVEVARILG----ELELDWE-SIAAGLLHDTV 201 (861)
Q Consensus 170 PYi~Hpl~VA~ILa----~l~lD~~-ti~AALLHDvv 201 (861)
+...|.+.|+.... .+++|.+ ...||||||+=
T Consensus 4 ~~~~H~~~v~~~a~~la~~~~~~~~~l~~AalLHDiG 40 (80)
T TIGR00277 4 NVLQHSLEVAKLAEALARELGLDVELARRGALLHDIG 40 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHccC
Confidence 34568888887654 3577765 56799999974
No 241
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=42.42 E-value=67 Score=36.23 Aligned_cols=75 Identities=24% Similarity=0.301 Sum_probs=46.1
Q ss_pred CCCChHHHHHhhhhhhcCCChhhHHHHHHHHH------H-----HHHhhcCCCcccCCCccchHHHHHHHHHHc-----C
Q 002985 123 KEDSPERLWEDLRPTISYLSPNELELVRRALM------L-----AFEAHDGQKRRSGEPFIIHPVEVARILGEL-----E 186 (861)
Q Consensus 123 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~A~~------~-----A~~aH~gQ~RksGePYi~Hpl~VA~ILa~l-----~ 186 (861)
..++.+++++.|...+.......+..+-+++- | |...|.. . .+| .+.|-+.|+.+...+ .
T Consensus 105 s~~~~e~l~~el~~~i~~i~~~~l~~l~~~~~~~~~~~f~~~PAa~~~HHa-y-~GG--LleHtl~v~~~~~~l~~~y~~ 180 (314)
T PRK13480 105 APLSKEEMQEEITQYIFEMENPNIQRITRHLLKKYQEEFLDYPAATKNHHE-F-VSG--LAYHVVSMLRLAKSICDLYPS 180 (314)
T ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCChHhhcccc-c-ccH--HHHHHHHHHHHHHHHHHhccc
Confidence 34567889888888776666666544433321 1 1111211 1 123 368999999987654 4
Q ss_pred CCHH-HHHHHhhcccc
Q 002985 187 LDWE-SIAAGLLHDTV 201 (861)
Q Consensus 187 lD~~-ti~AALLHDvv 201 (861)
+|.+ .+++|||||+=
T Consensus 181 ~n~dll~agalLHDiG 196 (314)
T PRK13480 181 LNKDLLYAGIILHDLG 196 (314)
T ss_pred cCHHHHHHHHHHHHhh
Confidence 6777 57889999963
No 242
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=42.02 E-value=55 Score=37.66 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=39.8
Q ss_pred EEEEEEE---eccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHH
Q 002985 773 QWFSVVC---IDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSS 833 (861)
Q Consensus 773 a~I~V~a---~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~ 833 (861)
+-|.|.+ .+++|+++++.++|++.++||..+.+. ...+.|-|. .|.+...+.+.+
T Consensus 338 a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~~s------~~~is~vv~~~d~~~av~~Lh~ 396 (401)
T TIGR00656 338 AKVSIVGAGMVGAPGVASEIFSALEEKNINILMIGSS------ETNISFLVDEKDAEKAVRKLHE 396 (401)
T ss_pred EEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEEcC------CCEEEEEEeHHHHHHHHHHHHH
Confidence 3455544 589999999999999999999977521 234667777 677666666554
No 243
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=41.06 E-value=18 Score=30.46 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=18.4
Q ss_pred EEEECCEecCC--CccCCCCCeEEE
Q 002985 576 AAKVNGNLVSP--THVLANAEVVEI 598 (861)
Q Consensus 576 ~akVng~~v~l--~~~L~~gd~VeI 598 (861)
+..|||+.+.. .++|++||+|.|
T Consensus 43 gt~vng~~l~~~~~~~L~~gd~i~~ 67 (68)
T PF00498_consen 43 GTFVNGQRLGPGEPVPLKDGDIIRF 67 (68)
T ss_dssp -EEETTEEESSTSEEEE-TTEEEEE
T ss_pred cEEECCEEcCCCCEEECCCCCEEEc
Confidence 77899999998 557999999986
No 244
>PF08753 NikR_C: NikR C terminal nickel binding domain; InterPro: IPR014864 NikR is a transcription factor that regulates nickel uptake. It consists of two dimeric DNA binding domains separated by a tetrameric regulatory domain that binds nickel. This protein corresponds to the C-terminal regulatory domain which contains four nickel binding sites at the tetramer interface []. ; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 2WVB_B 2WVD_C 3QSI_B 3LGH_A 2CAD_A ....
Probab=40.76 E-value=2.3e+02 Score=25.18 Aligned_cols=61 Identities=15% Similarity=0.160 Sum_probs=44.8
Q ss_pred cccHHHHHHHHHHhCCcce-eeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeee
Q 002985 782 RRGIMADVTTALATVGVTI-CSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWS 844 (861)
Q Consensus 782 R~GlLadItsvIa~~~iNI-~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~gV~~Vs 844 (861)
.+++...++.+--+..--| .+..+.-+ +....-.|.++++.+++..+..+|+.++||..++
T Consensus 12 ~~~l~~~l~~iqH~~~~~I~s~~Hvhl~--~~~ClEvivv~G~~~~I~~l~~~l~~~kGV~~~~ 73 (78)
T PF08753_consen 12 KRELSERLTEIQHEYHDIIISSLHVHLD--HDNCLEVIVVRGPADRIKELAEKLRSLKGVKHVK 73 (78)
T ss_dssp STTHHHHHHHHHHHTTTCEEEEEEEEES--SSEEEEEEEEEEEHHHHHHHHHHHHTSTTEEEEE
T ss_pred chhHHHHHHHHHHhCcCeEEEeeEEeec--CCCeEEEEEEEcCHHHHHHHHHHHhccCCeeEEE
Confidence 4579999999987765444 44444322 2445445566699999999999999999999875
No 245
>PRK08210 aspartate kinase I; Reviewed
Probab=39.79 E-value=80 Score=36.46 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=40.2
Q ss_pred EEEEEEecc-ccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHh
Q 002985 774 WFSVVCIDR-RGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSV 834 (861)
Q Consensus 774 ~I~V~a~DR-~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L 834 (861)
.|.|...+. +|.+++|.++|++.++||..+... . ..+.|++. .+.+.+..++.++
T Consensus 273 ~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~-~-----~~is~~v~~~~~~~a~~~l~~~ 329 (403)
T PRK08210 273 QIKVKAKENAYDLQQEVFKALAEAGISVDFINIF-P-----TEVVFTVSDEDSEKAKEILENL 329 (403)
T ss_pred EEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec-C-----ceEEEEEcHHHHHHHHHHHHHh
Confidence 455554444 999999999999999999998543 1 13667777 6677777666664
No 246
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=39.34 E-value=92 Score=25.90 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=29.7
Q ss_pred ccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHH
Q 002985 781 DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACS 832 (861)
Q Consensus 781 DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~ 832 (861)
+++|+++++.++|++ ++|.-++.. .....+.|-|. .|.+.+.+.+.
T Consensus 13 ~~~~v~~~i~~~L~~--i~i~~i~~~----~s~~~is~~V~~~~~~~a~~~Lh 59 (64)
T cd04917 13 ETAGVEKRIFDALED--INVRMICYG----ASNHNLCFLVKEEDKDEVVQRLH 59 (64)
T ss_pred CCcCHHHHHHHHHHh--CCeEEEEEe----cCccEEEEEEeHHHHHHHHHHHH
Confidence 789999999999976 455444322 12345777777 66655555443
No 247
>PRK00106 hypothetical protein; Provisional
Probab=39.30 E-value=25 Score=42.33 Aligned_cols=34 Identities=38% Similarity=0.585 Sum_probs=26.8
Q ss_pred CCCccchHHHHHHHH----HHcCCCHH-HHHHHhhcccc
Q 002985 168 GEPFIIHPVEVARIL----GELELDWE-SIAAGLLHDTV 201 (861)
Q Consensus 168 GePYi~Hpl~VA~IL----a~l~lD~~-ti~AALLHDvv 201 (861)
|...+.|.++||.+. ..+|+|.+ .-.||||||+=
T Consensus 348 ~qnl~~HSv~VA~lA~~lA~~lgld~e~a~~AGLLHDIG 386 (535)
T PRK00106 348 GQNVLRHSVEVGKLAGILAGELGENVALARRAGFLHDMG 386 (535)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcc
Confidence 566789999999864 36788854 57899999963
No 248
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=39.10 E-value=32 Score=27.90 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=21.5
Q ss_pred EEEECCEec-CCCccCCCCCeEEEEe
Q 002985 576 AAKVNGNLV-SPTHVLANAEVVEIIT 600 (861)
Q Consensus 576 ~akVng~~v-~l~~~L~~gd~VeIit 600 (861)
+.+|||+.+ ...+++..||+|.+.-
T Consensus 27 ~V~vn~~~~~~~~~~v~~~d~i~i~~ 52 (70)
T cd00165 27 HVLVNGKVVTKPSYKVKPGDVIEVDG 52 (70)
T ss_pred CEEECCEEccCCccCcCCCCEEEEcC
Confidence 578999999 8899999999988753
No 249
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=38.44 E-value=25 Score=35.17 Aligned_cols=32 Identities=25% Similarity=0.226 Sum_probs=23.7
Q ss_pred ccchHHHHHHHHH----HcCCCHH-HHHHHhhccccc
Q 002985 171 FIIHPVEVARILG----ELELDWE-SIAAGLLHDTVE 202 (861)
Q Consensus 171 Yi~Hpl~VA~ILa----~l~lD~~-ti~AALLHDvvE 202 (861)
-+.|.+.||.+.. .++.|.+ .-+||||||+=.
T Consensus 9 r~~Hsl~Va~~a~~lA~~~~~d~e~a~~AGLLHDIGk 45 (158)
T TIGR00488 9 RYQHCLGVGQTAKQLAEANKLDSKKAEIAGAYHDLAK 45 (158)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhc
Confidence 4679999987653 3567655 578999999754
No 250
>PRK06635 aspartate kinase; Reviewed
Probab=38.05 E-value=68 Score=36.95 Aligned_cols=53 Identities=26% Similarity=0.215 Sum_probs=38.6
Q ss_pred EEEEEEE---eccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHH
Q 002985 773 QWFSVVC---IDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNAC 831 (861)
Q Consensus 773 a~I~V~a---~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~ 831 (861)
+-+.|.+ .|++|++++|.++|++.++||..+... ...+.|.|. .|.+...+++
T Consensus 341 a~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ss------~~~is~vv~~~d~~~a~~~L 397 (404)
T PRK06635 341 AKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMISTS------EIKISVLIDEKYLELAVRAL 397 (404)
T ss_pred EEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEEec------CCeEEEEEcHHHHHHHHHHH
Confidence 3455543 689999999999999999999888632 144677787 6665554444
No 251
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=37.44 E-value=42 Score=31.69 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.9
Q ss_pred EEEECCEecCCCccCCCCCeEEEEecC
Q 002985 576 AAKVNGNLVSPTHVLANAEVVEIITYN 602 (861)
Q Consensus 576 ~akVng~~v~l~~~L~~gd~VeIit~~ 602 (861)
..+|||+.+..++.++.||+|+|-...
T Consensus 35 rV~vNG~~aKpS~~VK~GD~l~i~~~~ 61 (100)
T COG1188 35 RVKVNGQRAKPSKEVKVGDILTIRFGN 61 (100)
T ss_pred eEEECCEEcccccccCCCCEEEEEeCC
Confidence 367999999999999999999997753
No 252
>PF10741 T2SM_b: Type II secretion system (T2SS), protein M subtype b; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport
Probab=37.42 E-value=1.1e+02 Score=28.66 Aligned_cols=57 Identities=14% Similarity=0.137 Sum_probs=42.8
Q ss_pred ccHHHHHHHHHHhCCcceeeeEEeEecC-CcEE--EEEEEEEcCHHHHHHHHHHhccccC
Q 002985 783 RGIMADVTTALATVGVTICSCVAEIDRG-RGIA--VMLFHVEGNLESLVNACSSVDLILG 839 (861)
Q Consensus 783 ~GlLadItsvIa~~~iNI~sv~~~~~~~-~~~a--~m~ftVE~d~~~L~~l~~~L~~I~g 839 (861)
..+...|..++++.|++|.+.+...... .+.. .+.++++++.++|.+++..|..-.=
T Consensus 16 A~Lq~~l~~~v~~aG~~v~s~q~~p~~~~~~~~~i~v~~~~~g~~~~L~~~L~~LE~~~P 75 (110)
T PF10741_consen 16 AALQQRLRALVAAAGGQVSSSQVLPPRPDGNFRRISVRVSLEGDIEALQAFLYALESGRP 75 (110)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEecCCCCCCcceEEEEEEEEEeCHHHHHHHHHHHhcCCC
Confidence 3577888888999999999999875422 2333 4555555999999999999986543
No 253
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=36.81 E-value=1.1e+02 Score=30.52 Aligned_cols=67 Identities=10% Similarity=0.097 Sum_probs=53.7
Q ss_pred cccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeeeccccCCC
Q 002985 782 RRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWSTGCSWPS 851 (861)
Q Consensus 782 R~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~gV~~Vs~g~~~~~ 851 (861)
..-+-..|.+.|++.+.+...+++... ++.+++.=.+. +.++..++......|+||.+|...=.+..
T Consensus 24 ~~~~~~~i~~~i~~~~~~~~~i~V~v~--~G~v~l~G~v~-s~~~~~~~~~aa~~v~GV~~V~d~l~v~~ 90 (147)
T PRK11198 24 NEDAADALKEHISKQGLGDADVNVQVE--DGKATVSGDAA-SQEAKEKILLAVGNIQGIASVDDQVKVAT 90 (147)
T ss_pred hHHHHHHHHHHHHhcCCCcCCceEEEe--CCEEEEEEEeC-CHHHHHHHHHHhccCCCcceecccceecc
Confidence 355667888999999999988887754 36677766666 99999999999999999999997766543
No 254
>PRK07431 aspartate kinase; Provisional
Probab=36.73 E-value=66 Score=39.16 Aligned_cols=56 Identities=23% Similarity=0.316 Sum_probs=42.6
Q ss_pred EeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhc
Q 002985 779 CIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVD 835 (861)
Q Consensus 779 a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~ 835 (861)
..+++|++++|.++|++.++||..+...... .+...+.|+|. .+.+....++.+++
T Consensus 278 ~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~-~~~~~isf~i~~~d~~~~~~~l~~l~ 334 (587)
T PRK07431 278 VPDRPGIAAQLFEELAAQGVNVDLIIQSIHE-GNSNDIAFTVAENELKKAEAVAEAIA 334 (587)
T ss_pred CCCcccHHHHHHHHHHHcCCcEEEEEeccCC-CCCccEEEEEeHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999643221 23466889999 77777666666665
No 255
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=36.26 E-value=28 Score=39.58 Aligned_cols=60 Identities=18% Similarity=0.330 Sum_probs=44.3
Q ss_pred Cceeeec--CCC-ceEecCCCCcHHHHHHhhccccccceEEEEEC-----------------CE--ecCCCccCCCCCeE
Q 002985 539 SRVFVFT--PRG-EIKNLPKGATVVDYAYMIHTEIGNKMVAAKVN-----------------GN--LVSPTHVLANAEVV 596 (861)
Q Consensus 539 ~~I~Vft--P~G-~i~~lp~gaT~lDfAy~iht~ig~~~~~akVn-----------------g~--~v~l~~~L~~gd~V 596 (861)
+-|+-|| |++ .-+.+-+|.++.+.|--||++.-+..+.|-|+ |+ .+.-.|.+++||++
T Consensus 306 ~li~fFt~G~~eV~~WtIr~gt~ap~aagvihsdf~k~Fi~aev~~f~D~~~~k~e~a~k~~Gk~~~~Gk~yiVedGDIi 385 (391)
T KOG1491|consen 306 NLIVFFTCGEDEVRAWTIRKGTKAPQAAGVIHSDFEKGFIMAEVMKFEDFKEYKSESACKAAGKYRQVGKEYIVEDGDII 385 (391)
T ss_pred CceEEEeeCCchheeeehhhccccccccceeeehhhhhccccceeeeehHHHhcCHHHHHHhcchhhcCceeeecCCCEE
Confidence 3566666 666 56689999999999999999988877776552 22 34556778899876
Q ss_pred EE
Q 002985 597 EI 598 (861)
Q Consensus 597 eI 598 (861)
-.
T Consensus 386 ~F 387 (391)
T KOG1491|consen 386 FF 387 (391)
T ss_pred EE
Confidence 43
No 256
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=36.26 E-value=43 Score=38.16 Aligned_cols=58 Identities=26% Similarity=0.263 Sum_probs=36.4
Q ss_pred ccchHHHHHHHHH----HcCCCHHH-HHHHhhccccccCC------CCCHHHHHH-HhCHHHHHHHHhhc
Q 002985 171 FIIHPVEVARILG----ELELDWES-IAAGLLHDTVEDTN------VVTFERIEE-EFGATVRRIVEGET 228 (861)
Q Consensus 171 Yi~Hpl~VA~ILa----~l~lD~~t-i~AALLHDvvEDt~------~~t~e~I~~-~FG~~Va~LV~gvT 228 (861)
.+.|.+.|+.... .++.|.+. ++||||||+-.... ....+.|++ .|.++++.+|..-.
T Consensus 188 l~~Hs~rVa~lA~~LA~~~~~D~~ll~aAALLHDIGK~k~~~~~H~~~Ga~iL~e~G~~e~i~~iIe~H~ 257 (339)
T PRK12703 188 LIRHVKTVYKLAMRIADCINADRRLVAAGALLHDIGRTKTNGIDHAVAGAEILRKENIDDRVVSIVERHI 257 (339)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 4689999997643 46778765 57799999963221 012233333 25678888886543
No 257
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=35.82 E-value=94 Score=27.49 Aligned_cols=51 Identities=12% Similarity=0.196 Sum_probs=38.5
Q ss_pred eccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhcc
Q 002985 780 IDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDL 836 (861)
Q Consensus 780 ~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~ 836 (861)
..+.|.-+.|..+|++.+++|.+..+. . -.++.-+..+.+.+.+++..|++
T Consensus 12 vG~~g~d~~i~~~l~~~~v~ii~K~~n--A----Ntit~yl~~~~k~~~r~~~~Le~ 62 (71)
T cd04910 12 VGEVGYDLEILELLQRFKVSIIAKDTN--A----NTITHYLAGSLKTIKRLTEDLEN 62 (71)
T ss_pred cCChhHHHHHHHHHHHcCCeEEEEecC--C----CeEEEEEEcCHHHHHHHHHHHHH
Confidence 456788999999999999999887432 1 23455555777899999999853
No 258
>PRK10119 putative hydrolase; Provisional
Probab=35.81 E-value=71 Score=34.46 Aligned_cols=51 Identities=20% Similarity=0.100 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhcCCCcccCCCccchHHHHHHHHH----HcCCCHH-HHHHHhhccccc
Q 002985 149 VRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILG----ELELDWE-SIAAGLLHDTVE 202 (861)
Q Consensus 149 l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa----~l~lD~~-ti~AALLHDvvE 202 (861)
+.++..|..+...+. . +|- =+.|-.+|..... .-+.|.+ ..+||||||+..
T Consensus 7 ~~~~~~~v~~~l~~~-~-~~H-D~~Hi~RV~~lA~~Ia~~e~~D~~vv~lAAlLHDv~d 62 (231)
T PRK10119 7 QAQFENWLKNHHQHQ-D-AAH-DICHFRRVWATAQKLAADDDVDMLVVLTACYFHDIVS 62 (231)
T ss_pred HHHHHHHHHHHhhcC-C-Ccc-ChHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcch
Confidence 445556665543332 1 111 1567777775433 3366766 468999999973
No 259
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=35.36 E-value=35 Score=34.53 Aligned_cols=57 Identities=28% Similarity=0.354 Sum_probs=34.3
Q ss_pred CCccchHHHHHHHHH----HcC-----CCHH-HHHHHhhccccccCC------CCCHHHHHHH--hCHHHHHHHHh
Q 002985 169 EPFIIHPVEVARILG----ELE-----LDWE-SIAAGLLHDTVEDTN------VVTFERIEEE--FGATVRRIVEG 226 (861)
Q Consensus 169 ePYi~Hpl~VA~ILa----~l~-----lD~~-ti~AALLHDvvEDt~------~~t~e~I~~~--FG~~Va~LV~g 226 (861)
+..+.|.+.|+.+.. .++ .|.+ ..+||||||+=.... ....+ +.+. |.++++.+|..
T Consensus 12 ~~~~~Hs~~Va~~A~~ia~~~~~~~~~~d~~~l~~aaLLHDIGK~~~~~~~H~~~G~~-iL~~~g~~~~i~~iI~~ 86 (164)
T TIGR00295 12 ESVRRHCLAVARVAMELAENIRKKGHEVDMDLVLKGALLHDIGRARTHGFEHFVKGAE-ILRKEGVDEKIVRIAER 86 (164)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHhcCCcccCCCCCHHHHHHH-HHHHcCCCHHHHHHHHH
Confidence 345689999987643 344 4544 578999999864211 01223 3333 45678888754
No 260
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=34.68 E-value=1.2e+02 Score=35.64 Aligned_cols=64 Identities=17% Similarity=0.169 Sum_probs=42.5
Q ss_pred EEEEEEEecc--ccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCe
Q 002985 773 QWFSVVCIDR--RGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGV 840 (861)
Q Consensus 773 a~I~V~a~DR--~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV 840 (861)
+.|.|...+- +|.+++|.++|++.++||..+...+. ...+.|.|. .+.+...+++..+++..++
T Consensus 303 ~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~s----e~sIs~~I~~~~~~~a~~~L~~~~~~~~~ 369 (441)
T TIGR00657 303 ARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSS----ETSISFTVDKEDADQAKTLLKSELNLSAL 369 (441)
T ss_pred EEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCC----CceEEEEEEHHHHHHHHHHHHHHHHhcCc
Confidence 3445543332 79999999999999999988853211 234788888 6666666666665433333
No 261
>KOG3820 consensus Aromatic amino acid hydroxylase [Amino acid transport and metabolism]
Probab=34.22 E-value=1.3e+02 Score=35.02 Aligned_cols=65 Identities=11% Similarity=0.060 Sum_probs=49.8
Q ss_pred EEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecC-CcEEEEEEEEEcCHHHHHHHHHHhccc
Q 002985 773 QWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRG-RGIAVMLFHVEGNLESLVNACSSVDLI 837 (861)
Q Consensus 773 a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~-~~~a~m~ftVE~d~~~L~~l~~~L~~I 837 (861)
..+-+...++.|-|+++..++...++||..+.+...+. ..-..+.+.++....+|..++.-+++-
T Consensus 37 ~~~if~~r~~~~~l~~~Lk~f~~~~vnl~HiEsR~s~~~~~~~evlv~~~~~~~~l~~~i~~lrq~ 102 (461)
T KOG3820|consen 37 ISLIFSLRNKVGALARALKAFEEFHVNLLHIESRPSERRSSGYEVLVELDATRGQLIQAIELLRQN 102 (461)
T ss_pred EEEEEEecccchHHHHHHHHhhhcCceEEEeecccccccCCCceEEEeeccchhhHHHHHHHHHHh
Confidence 34666788899999999999999999999999875432 122455555556666899999888875
No 262
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=34.09 E-value=20 Score=41.91 Aligned_cols=56 Identities=25% Similarity=0.247 Sum_probs=36.4
Q ss_pred hhhHHHHHHHHHHHHHhh----cCCCcccCCCccchHHHHHHHHHHc----CC--CH--------HHHHHHhhccccccC
Q 002985 143 PNELELVRRALMLAFEAH----DGQKRRSGEPFIIHPVEVARILGEL----EL--DW--------ESIAAGLLHDTVEDT 204 (861)
Q Consensus 143 ~~~~~~l~~A~~~A~~aH----~gQ~RksGePYi~Hpl~VA~ILa~l----~l--D~--------~ti~AALLHDvvEDt 204 (861)
..++++|+.-.++....+ +.-+| +.|.+.|..+...+ +. +. .+.+||||||+= .+
T Consensus 26 T~~FQRLRrIkQLG~a~lvyPgAnHTR------FeHSLGV~~la~~~~~~l~~~~~~~~~~~~~~~~~~AALLHDIG-Hg 98 (421)
T COG1078 26 TPEFQRLRRIKQLGLAYLVYPGANHTR------FEHSLGVYHLARRLLEHLEKNSEEEIDEEERLLVRLAALLHDIG-HG 98 (421)
T ss_pred CHHHHHHHHhhhccceeEecCCCcccc------cchhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHccC-CC
Confidence 347778888777766521 22244 78999999887542 21 11 378999999973 44
Q ss_pred C
Q 002985 205 N 205 (861)
Q Consensus 205 ~ 205 (861)
+
T Consensus 99 P 99 (421)
T COG1078 99 P 99 (421)
T ss_pred c
Confidence 4
No 263
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=33.86 E-value=83 Score=26.79 Aligned_cols=60 Identities=15% Similarity=0.299 Sum_probs=41.0
Q ss_pred ceeeecCCCceEec--CCCCcHHHHH--Hhhcccccc-ceEEEEECCEecCCCcc-----CCCCCeEEEE
Q 002985 540 RVFVFTPRGEIKNL--PKGATVVDYA--YMIHTEIGN-KMVAAKVNGNLVSPTHV-----LANAEVVEII 599 (861)
Q Consensus 540 ~I~VftP~G~i~~l--p~gaT~lDfA--y~iht~ig~-~~~~akVng~~v~l~~~-----L~~gd~VeIi 599 (861)
.|+|.+++|+.+.+ ....|...+. |+-...+.. .-+.-..||+.+..+.. +++||+|+++
T Consensus 2 ~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 2 TIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp EEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEE
Confidence 36788888875554 6666776664 444445555 55778889988887764 6999999985
No 264
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=33.45 E-value=78 Score=34.17 Aligned_cols=61 Identities=16% Similarity=0.053 Sum_probs=44.1
Q ss_pred EeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeee
Q 002985 779 CIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWS 844 (861)
Q Consensus 779 a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~Vs 844 (861)
.+=.+.-|..|..+|.+.|+.|.+..+.-.. .-.+.|. .+.+.+.+++.+|+..++|..|-
T Consensus 169 ~~c~p~~~~~v~~~L~~~g~~i~~~e~~~~P-----~~~v~l~~e~~~~~~~lie~Lee~dDV~~Vy 230 (234)
T PF01709_consen 169 FICDPSDLSAVKKALEKKGYEIESAELEYIP-----NNPVELSEEDAEKVEKLIEALEELDDVQNVY 230 (234)
T ss_dssp EEEEGGGHHHHHHHHHHTT---SEEEEEEEE-----SS-EE--HHHHHHHHHHHHHHHTSTTEEEEE
T ss_pred EEECHHHHHHHHHHHHHcCCCeeEEEEEEeC-----CCCcccCHHHHHHHHHHHHHHhCCcCcceee
Confidence 3446788999999999999999888765321 1234557 78999999999999999999985
No 265
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=33.31 E-value=1.5e+02 Score=29.88 Aligned_cols=70 Identities=11% Similarity=0.087 Sum_probs=48.2
Q ss_pred EEEEEe-ccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHH-HHhccccCeeeeeccccC
Q 002985 775 FSVVCI-DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNAC-SSVDLILGVLGWSTGCSW 849 (861)
Q Consensus 775 I~V~a~-DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~-~~L~~I~gV~~Vs~g~~~ 849 (861)
+.|.+. +++..+.++...|++. -.|..|...+ |.+.+.+.+. .|.++|.+++ ..|..++||.++.+--..
T Consensus 78 v~i~~~~~~~~~~~~~~~~l~~~-p~V~~~~~vt----G~~d~~l~v~~~~~~~l~~~l~~~l~~~~gV~~~~t~ivl 150 (164)
T PRK11169 78 VEITLNRGAPDVFEQFNAAVQKL-EEIQECHLVS----GDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVM 150 (164)
T ss_pred EEEEEcCCChHHHHHHHHHHhcC-cceeeeeeec----CCCCEEEEEEECCHHHHHHHHHHHhhcCCCeeeEEEEEEE
Confidence 344433 4566788898888864 2355554432 2355666666 7999999988 689999999998865443
No 266
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=32.91 E-value=1.4e+02 Score=25.84 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccc
Q 002985 785 IMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLI 837 (861)
Q Consensus 785 lLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I 837 (861)
+|++++..+. ..+||..-+++.-++.....|.+.+.++.+++.++++.|++-
T Consensus 18 iis~l~~~~~-v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~~ 69 (76)
T PF09383_consen 18 IISQLIREFG-VDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLREQ 69 (76)
T ss_dssp HHHHHHHHHT--EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHhC-CCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHHC
Confidence 5555554443 568999999887666566777777778889999999999864
No 267
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=32.76 E-value=45 Score=35.33 Aligned_cols=45 Identities=22% Similarity=0.265 Sum_probs=32.5
Q ss_pred EecCCCCcHHHHHHhhc----cccccc--e-------EEEEECCEec-CCCccCCC-CCe
Q 002985 551 KNLPKGATVVDYAYMIH----TEIGNK--M-------VAAKVNGNLV-SPTHVLAN-AEV 595 (861)
Q Consensus 551 ~~lp~gaT~lDfAy~ih----t~ig~~--~-------~~akVng~~v-~l~~~L~~-gd~ 595 (861)
++.+.|.|++|++..|+ +.++.+ | =+++|||+.+ .-.+++++ |..
T Consensus 19 v~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~vnG~~~laC~t~v~~~g~~ 78 (220)
T TIGR00384 19 VPADEGMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNVNGKPVLACKTKVEDLGQP 78 (220)
T ss_pred EeCCCCCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEECCEEhhhhhChHHHcCCC
Confidence 45669999999999876 334332 1 1689999887 57778888 873
No 268
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=32.61 E-value=1.7e+02 Score=24.94 Aligned_cols=62 Identities=13% Similarity=0.177 Sum_probs=45.2
Q ss_pred ceeeecCCCce--EecCCCCcHHHHHHhhccccccc--eEEEEECCEecCCCc-----cCCCCCeEEEEec
Q 002985 540 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGNK--MVAAKVNGNLVSPTH-----VLANAEVVEIITY 601 (861)
Q Consensus 540 ~I~VftP~G~i--~~lp~gaT~lDfAy~iht~ig~~--~~~akVng~~v~l~~-----~L~~gd~VeIit~ 601 (861)
.|+|-+++|+. ++++...|+.++=-.|+...|-. ...-..+|+...-+. -+++|++|.++..
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (76)
T cd01803 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (76)
T ss_pred EEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence 47899999875 57788889999988888776544 334446787666444 3588999988764
No 269
>PF04031 Las1: Las1-like ; InterPro: IPR007174 Las1 is an essential nuclear protein involved in cell morphogenesis and cell surface growth [].
Probab=31.41 E-value=1.4e+02 Score=30.17 Aligned_cols=71 Identities=23% Similarity=0.259 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHHHHhhcCCCcccCCCccchHHHHHHHHHHcCCCHHHHHHHhhcc--ccccCCCCCHHHHHHHhCHHHH
Q 002985 144 NELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHD--TVEDTNVVTFERIEEEFGATVR 221 (861)
Q Consensus 144 ~~~~~l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa~l~lD~~ti~AALLHD--vvEDt~~~t~e~I~~~FG~~Va 221 (861)
++.+...+|+..-... ..| | |.+.|+++....|. .++|+| ..+..+..+..+|+..|+-.+.
T Consensus 22 ~~~~~~~~al~~v~~W---~~R--~-~~lP~aVe~Ta~Ll----------~~~l~d~~~~~~~~~~~~~~lr~~ysmaiv 85 (154)
T PF04031_consen 22 DDPESRRRALERVSAW---KSR--G-SKLPHAVESTASLL----------EAQLQDEEDPSSSGARSEQELRLSYSMAIV 85 (154)
T ss_pred CCHHHHHHHHHHHHHH---HHc--C-CCCcHHHHHHHHHH----------HHHccCccccccccCCCHHHHHHHHHHhHH
Confidence 4666777777766543 222 2 66889998887554 467777 2222223677889999999999
Q ss_pred HHHHhhccc
Q 002985 222 RIVEGETKV 230 (861)
Q Consensus 222 ~LV~gvTkv 230 (861)
+.|.|+++.
T Consensus 86 RfVNgl~D~ 94 (154)
T PF04031_consen 86 RFVNGLVDP 94 (154)
T ss_pred HHHHHhhhH
Confidence 999999864
No 270
>PRK04460 nickel responsive regulator; Provisional
Probab=31.34 E-value=4.5e+02 Score=26.18 Aligned_cols=83 Identities=8% Similarity=0.061 Sum_probs=55.8
Q ss_pred ccCCCCCceeEEEEEEEec--cccHHHHHHHHHHhCCccee-eeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccccC
Q 002985 763 TWHNLEGHSIQWFSVVCID--RRGIMADVTTALATVGVTIC-SCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILG 839 (861)
Q Consensus 763 ~W~~~~~~~~a~I~V~a~D--R~GlLadItsvIa~~~iNI~-sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~g 839 (861)
.|...++.-...|.+ .+| .+++-..++++.-+..-.|. +..+.- +.....-.|.|+++...+..+.++|..++|
T Consensus 45 ~~~~~~~~~~Gvi~v-vYdH~~~~l~~~l~~iqH~~~d~Iiss~HvHl--d~~~ClEvivv~G~~~~I~~L~~~l~~~kG 121 (137)
T PRK04460 45 EWEEGDEEVAGTVTL-VYNHHVSDLAQKLTEIQHDHHDEIISSLHVHL--DHHNCLEVLVLKGKAKEIKKIADRLISTKG 121 (137)
T ss_pred hhhcCCCeEEEEEEE-EEeCCcchHHHHHHHHHHhhhceEEEEEEEec--CCCcEEEEEEEEcCHHHHHHHHHHHHhcCC
Confidence 675443332444554 444 44788899998887655554 444432 223344455556999999999999999999
Q ss_pred eeeeecccc
Q 002985 840 VLGWSTGCS 848 (861)
Q Consensus 840 V~~Vs~g~~ 848 (861)
|..++.-+.
T Consensus 122 V~~~kl~~~ 130 (137)
T PRK04460 122 VKHGKLVMT 130 (137)
T ss_pred eeEEEEEEe
Confidence 999988776
No 271
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=30.56 E-value=67 Score=35.87 Aligned_cols=51 Identities=14% Similarity=0.120 Sum_probs=36.1
Q ss_pred CCceEec-CCCCcHHHHHHhhccccccceE-------------EEEECCE--ec-CCCccCCCCCeEE
Q 002985 547 RGEIKNL-PKGATVVDYAYMIHTEIGNKMV-------------AAKVNGN--LV-SPTHVLANAEVVE 597 (861)
Q Consensus 547 ~G~i~~l-p~gaT~lDfAy~iht~ig~~~~-------------~akVng~--~v-~l~~~L~~gd~Ve 597 (861)
||+.+++ |+|.|.+|+|.+.+..|-+-|. -+.|+|+ ++ .=.+++++|.+|.
T Consensus 74 DGk~VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEVeG~~~lv~AC~tpV~eGM~V~ 141 (297)
T PTZ00305 74 NKRPVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQVDGTQNLVVSCATVALPGMSII 141 (297)
T ss_pred CCEEEEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEECCCcCcccccCCcCCCCCEEE
Confidence 9999999 9999999999887555444322 2566775 22 3345678888776
No 272
>PRK00630 nickel responsive regulator; Provisional
Probab=29.61 E-value=4.8e+02 Score=26.33 Aligned_cols=85 Identities=13% Similarity=0.073 Sum_probs=57.3
Q ss_pred cccCCCC---CceeEEEEEEEecc--ccHHHHHHHHHHhCCcceeee-EEeEecCCcEEEEEEEEEcCHHHHHHHHHHhc
Q 002985 762 ATWHNLE---GHSIQWFSVVCIDR--RGIMADVTTALATVGVTICSC-VAEIDRGRGIAVMLFHVEGNLESLVNACSSVD 835 (861)
Q Consensus 762 V~W~~~~---~~~~a~I~V~a~DR--~GlLadItsvIa~~~iNI~sv-~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~ 835 (861)
-.|.... +.-...|.+ .+|. +++...++++.-+..-.|.+. .+.- +.....-.|.|+++...+..+.++|.
T Consensus 52 ~~~~~~~~~~~~~~G~itv-vYdH~~~~l~~~l~~iqH~~~d~Iist~HvHl--d~~~CLEvivv~G~~~~I~~la~~l~ 128 (148)
T PRK00630 52 DNWAEDNPNDESKIAVLVV-IYDHHQRELNQRMIDIQHASGTHILCTTHIHM--DHHNCLETIILRGNSFEIQRLQLEIG 128 (148)
T ss_pred hhhhccCccCceEEEEEEE-EEeCCcchHHHHHHHHHHhhhceEEEEEEEec--CCCCEEEEEEEEcCHHHHHHHHHHHH
Confidence 3776444 222344444 4444 489999999987765555443 3332 22334446667799999999999999
Q ss_pred cccCeeeeeccccC
Q 002985 836 LILGVLGWSTGCSW 849 (861)
Q Consensus 836 ~I~gV~~Vs~g~~~ 849 (861)
.++||.-+..-++-
T Consensus 129 ~~kGVk~~kl~~~~ 142 (148)
T PRK00630 129 GLKGVKFAKLTKAS 142 (148)
T ss_pred hcCCeEEEEEEEec
Confidence 99999999876654
No 273
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1.13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.
Probab=29.34 E-value=60 Score=35.31 Aligned_cols=52 Identities=25% Similarity=0.255 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhcCCCcccCCCccchHHHHHHHHHHcCCCHHH-HHHHhhccc
Q 002985 149 VRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWES-IAAGLLHDT 200 (861)
Q Consensus 149 l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa~l~lD~~t-i~AALLHDv 200 (861)
|..|+++....-..--.....|-|.|.++.|+.++.-.-+++- ..+||+||.
T Consensus 41 i~eA~~~L~~LvDeSDPD~d~~~i~H~lQTAEaiR~d~~~~dW~~LtGLiHDL 93 (253)
T PF05153_consen 41 IWEALELLNTLVDESDPDTDLPQIQHALQTAEAIRRDHPDPDWMQLTGLIHDL 93 (253)
T ss_dssp HHHHHHHGGG---TT-TT--S-HHHHHHHHHHHHHHHSTT-HHHHHHHHHTTG
T ss_pred HHHHHHHHHHhccCccCCCchhHHHHHHHHHHHHHHhCCCcchhhheehhccc
Confidence 3445555444433222234568899999999988876445554 468999985
No 274
>PRK08841 aspartate kinase; Validated
Probab=29.08 E-value=1.1e+02 Score=35.63 Aligned_cols=56 Identities=16% Similarity=0.389 Sum_probs=43.6
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHH
Q 002985 772 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSS 833 (861)
Q Consensus 772 ~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~ 833 (861)
.+-+.|.+.+.+|+++.+.++|++.++||..+... ...+.|.|. .|.++..+.+.+
T Consensus 318 ~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~~s------~~~is~vv~~~~~~~av~~lH~ 374 (392)
T PRK08841 318 VSLLTLVGLEANGMVEHACNLLAQNGIDVRQCSTE------PQSSMLVLDPANVDRAANILHK 374 (392)
T ss_pred EEEEEEECCCChHHHHHHHHHHHhCCCCEEEEECC------CcEEEEEEeHHHHHHHHHHHHH
Confidence 45688888889999999999999999999888642 255777887 666666665554
No 275
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=29.07 E-value=1.4e+02 Score=25.72 Aligned_cols=63 Identities=13% Similarity=0.161 Sum_probs=43.9
Q ss_pred ceeeecCCCce--EecCCCCcHHHHHHhhcccccc--ce--EEEEECCEecCCCc-----cCCCCCeEEEEecC
Q 002985 540 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGN--KM--VAAKVNGNLVSPTH-----VLANAEVVEIITYN 602 (861)
Q Consensus 540 ~I~VftP~G~i--~~lp~gaT~lDfAy~iht~ig~--~~--~~akVng~~v~l~~-----~L~~gd~VeIit~~ 602 (861)
.|+|.++.|+. ++++...|+.|+=..|+...|- .+ ..-..+|+...-+. -+++|++|-++-.+
T Consensus 2 ~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 2 KITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 47899999976 4666778999998888776653 21 12334787766443 46899998877643
No 276
>PRK02967 nickel responsive regulator; Provisional
Probab=28.68 E-value=5.7e+02 Score=25.52 Aligned_cols=84 Identities=11% Similarity=0.100 Sum_probs=57.0
Q ss_pred cccCCCCCce-eEEEEEEEec--cccHHHHHHHHHHhCCcce-eeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccc
Q 002985 762 ATWHNLEGHS-IQWFSVVCID--RRGIMADVTTALATVGVTI-CSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLI 837 (861)
Q Consensus 762 V~W~~~~~~~-~a~I~V~a~D--R~GlLadItsvIa~~~iNI-~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I 837 (861)
-.|....+.. ...|.+ .+| .+++-..++++--+..-.| .+..+.- +.....-.|.|+++.+.+..+..+|..+
T Consensus 43 ~~~~~~~~~~~~G~it~-vYdH~~~~l~~~l~~iqH~~~d~I~ss~HvHl--d~~~ClEvivv~G~~~~I~~l~~~l~~~ 119 (139)
T PRK02967 43 ERTQEHQGTQCVAVLSY-VYDHEKRDLASRLVSTQHHHHDLSVATLHVHL--DHDDCLEVAVLKGDTGDVQHFADDVIAE 119 (139)
T ss_pred hhhhccCCCeEEEEEEE-EEeCCcccHHHHHHHHHHhhcceEEEEEEEec--CCCcEEEEEEEEcCHHHHHHHHHHHHhc
Confidence 3786442222 334444 444 4488899999887765444 4444442 2233445566669999999999999999
Q ss_pred cCeeeeecccc
Q 002985 838 LGVLGWSTGCS 848 (861)
Q Consensus 838 ~gV~~Vs~g~~ 848 (861)
+||.-++.-++
T Consensus 120 kGVk~~~l~~~ 130 (139)
T PRK02967 120 RGVRHGHLQCL 130 (139)
T ss_pred CCeeEEEEEEe
Confidence 99999988877
No 277
>PRK11507 ribosome-associated protein; Provisional
Probab=28.42 E-value=63 Score=28.62 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=19.0
Q ss_pred EEEECCEecCCCc-cCCCCCeEEEE
Q 002985 576 AAKVNGNLVSPTH-VLANAEVVEII 599 (861)
Q Consensus 576 ~akVng~~v~l~~-~L~~gd~VeIi 599 (861)
..+|||+.-.-.. +|.+||+|++-
T Consensus 38 ~V~VNGeve~rRgkKl~~GD~V~~~ 62 (70)
T PRK11507 38 QVKVDGAVETRKRCKIVAGQTVSFA 62 (70)
T ss_pred ceEECCEEecccCCCCCCCCEEEEC
Confidence 4789998666555 59999999983
No 278
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=28.34 E-value=1.9e+02 Score=33.76 Aligned_cols=99 Identities=18% Similarity=0.168 Sum_probs=56.4
Q ss_pred ccccCCceeeeecCCCCCCCCCCCChHHHHHhhhhhhcCCChhh-HHHHHHHH-------HHHHHhhcCCCcccC--CCc
Q 002985 102 LHVACKRWRLCLSPSVSSDAFKEDSPERLWEDLRPTISYLSPNE-LELVRRAL-------MLAFEAHDGQKRRSG--EPF 171 (861)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~l~~A~-------~~A~~aH~gQ~RksG--ePY 171 (861)
+..+...|++..... .+.....+++|.+|+++......-.+.. ++.+.+.= +++.-.+-.|....- .+.
T Consensus 150 f~i~~~T~~~i~~~~-~~~~L~~~~~ERi~~El~kiL~~~~p~~~l~~L~~~g~L~~l~PEl~~l~~~~Q~~~~H~e~dv 228 (409)
T PRK10885 150 FRIAPETLALMREMV-ASGELDALTPERVWKETERALMERNPQVFFQVLRDCGALAVLLPEIDALFGVPQPAKWHPEIDT 228 (409)
T ss_pred CCcCHHHHHHHHHhh-hhchhhhCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhHHHHHhhHHHHHhcCCCCcCCCCCCcH
Confidence 444455555443321 2234556889999999988765433322 33343321 122212223332211 134
Q ss_pred cchHHHHHHHHHHcCCCHHHHHHHhhcccc
Q 002985 172 IIHPVEVARILGELELDWESIAAGLLHDTV 201 (861)
Q Consensus 172 i~Hpl~VA~ILa~l~lD~~ti~AALLHDvv 201 (861)
..|-+.|...+..+..+.....||||||+=
T Consensus 229 ~~Htl~~l~~~~~l~~~l~lr~AaLlHDlG 258 (409)
T PRK10885 229 GIHTLMVLDQAAKLSPSLDVRFAALCHDLG 258 (409)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHhcccc
Confidence 578888888888777777788999999974
No 279
>PRK07431 aspartate kinase; Provisional
Probab=28.14 E-value=1.2e+02 Score=36.80 Aligned_cols=57 Identities=23% Similarity=0.287 Sum_probs=44.7
Q ss_pred EeccccHHHHHHHHHHhCCcceeeeEEeEe-cCCcEEEEEEEEE-cCHHHHHHHHHHhc
Q 002985 779 CIDRRGIMADVTTALATVGVTICSCVAEID-RGRGIAVMLFHVE-GNLESLVNACSSVD 835 (861)
Q Consensus 779 a~DR~GlLadItsvIa~~~iNI~sv~~~~~-~~~~~a~m~ftVE-~d~~~L~~l~~~L~ 835 (861)
..+++|.++.|.+.|++.++||..+..... .+.+...+.|++. .+...+..++..++
T Consensus 447 ~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~~~~~~~~~~l~~l~ 505 (587)
T PRK07431 447 VPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPKEDREAAQKVLRELA 505 (587)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcHHHHHHHHHHHHHHH
Confidence 457799999999999999999999965322 1124567889999 88888888887776
No 280
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=26.95 E-value=1.5e+02 Score=34.71 Aligned_cols=54 Identities=22% Similarity=0.234 Sum_probs=39.4
Q ss_pred EEEEEE---EeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHH
Q 002985 773 QWFSVV---CIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACS 832 (861)
Q Consensus 773 a~I~V~---a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~ 832 (861)
+-+.|. ..+++|++++|.++|++.++||..+... . ..+.|.|. .|.+...+.+.
T Consensus 379 a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~~s---e---~~Is~vV~~~d~~~a~~~Lh 436 (441)
T TIGR00657 379 AKVSLVGAGMKSAPGVASKIFEALAQNGINIEMISSS---E---INISFVVDEKDAEKAVRLLH 436 (441)
T ss_pred EEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEEec---C---CcEEEEEeHHHHHHHHHHHH
Confidence 445664 3478999999999999999999888632 1 44788888 66665544443
No 281
>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain). Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.
Probab=26.35 E-value=2.3e+02 Score=25.05 Aligned_cols=61 Identities=10% Similarity=0.155 Sum_probs=43.4
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeeecc
Q 002985 775 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWSTG 846 (861)
Q Consensus 775 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~gV~~Vs~g 846 (861)
|.|.+ ...-..+|.+++...++.|..++.+ .+.|.+.++.+.+..+++.|+. .|++++.|.
T Consensus 7 iKV~~--~~~~r~ei~~l~~~f~a~ivd~~~~--------~~iie~tG~~~kid~fi~~l~~-~gi~Ei~Rt 67 (75)
T PF10369_consen 7 IKVKA--TPENRSEILQLAEIFRARIVDVSPD--------SIIIELTGTPEKIDAFIKLLKP-FGILEIART 67 (75)
T ss_dssp EEEE---SCHHHHHHHHHHHHTT-EEEEEETT--------EEEEEEEE-HHHHHHHHHHSTG-GGEEEEEEE
T ss_pred EEEEC--CccCHHHHHHHHHHhCCEEEEECCC--------EEEEEEcCCHHHHHHHHHHhhh-cCCEEEEcc
Confidence 44544 4566688888888889988777521 1445555999999999999999 999998763
No 282
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.12 E-value=1.7e+02 Score=26.21 Aligned_cols=57 Identities=11% Similarity=0.008 Sum_probs=42.2
Q ss_pred EeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cC--HHHHHHHHHHhccccCee
Q 002985 779 CIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GN--LESLVNACSSVDLILGVL 841 (861)
Q Consensus 779 a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d--~~~L~~l~~~L~~I~gV~ 841 (861)
.....|.++.+.+++.+.|+++..+-+. .-.|.+.|. .+ .+.+.+++++|++.-+.-
T Consensus 11 Mn~evGF~rk~L~I~E~~~is~Eh~PSG------ID~~Siii~~~~~~~~~~~~i~~~i~~~~~pD 70 (76)
T cd04911 11 MNREVGFGRKLLSILEDNGISYEHMPSG------IDDISIIIRDNQLTDEKEQKILAEIKEELHPD 70 (76)
T ss_pred ccchhcHHHHHHHHHHHcCCCEeeecCC------CccEEEEEEccccchhhHHHHHHHHHHhcCCC
Confidence 3556899999999999999999988543 223677777 32 337889999998854443
No 283
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=25.96 E-value=17 Score=25.38 Aligned_cols=16 Identities=19% Similarity=0.530 Sum_probs=12.4
Q ss_pred CCceeeecCCCceEec
Q 002985 538 GSRVFVFTPRGEIKNL 553 (861)
Q Consensus 538 ~~~I~VftP~G~i~~l 553 (861)
...+.+|.|+|+++.+
T Consensus 2 D~~~t~FSp~Grl~QV 17 (23)
T PF10584_consen 2 DRSITTFSPDGRLFQV 17 (23)
T ss_dssp SSSTTSBBTTSSBHHH
T ss_pred CCCceeECCCCeEEee
Confidence 3467899999998753
No 284
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=25.92 E-value=56 Score=37.20 Aligned_cols=33 Identities=36% Similarity=0.373 Sum_probs=24.4
Q ss_pred cchHHHHHHHHH----HcCCCHHH-HHHHhhccccccCC
Q 002985 172 IIHPVEVARILG----ELELDWES-IAAGLLHDTVEDTN 205 (861)
Q Consensus 172 i~Hpl~VA~ILa----~l~lD~~t-i~AALLHDvvEDt~ 205 (861)
+.|.++|+.+.. .++.+.+. -+|||+||+= .++
T Consensus 64 ~~Hsl~V~~iar~~~~~l~~~~~l~~aaaL~HDiG-h~P 101 (336)
T PRK01286 64 LTHTLEVAQIARTIARALRLNEDLTEAIALGHDLG-HTP 101 (336)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCC-CCC
Confidence 689999999764 46776654 4789999973 444
No 285
>PRK12704 phosphodiesterase; Provisional
Probab=25.53 E-value=65 Score=38.81 Aligned_cols=34 Identities=44% Similarity=0.619 Sum_probs=25.6
Q ss_pred CCCccchHHHHHHHH----HHcCCCHHH-HHHHhhcccc
Q 002985 168 GEPFIIHPVEVARIL----GELELDWES-IAAGLLHDTV 201 (861)
Q Consensus 168 GePYi~Hpl~VA~IL----a~l~lD~~t-i~AALLHDvv 201 (861)
|...+.|.++||.+. ..+|+|.+. ..||||||+=
T Consensus 333 ~qn~l~Hs~~Va~lA~~lA~~lgld~~~a~~AgLLHDIG 371 (520)
T PRK12704 333 GQNVLQHSIEVAHLAGLMAAELGLDVKLAKRAGLLHDIG 371 (520)
T ss_pred CCcHhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHccC
Confidence 445678999999864 257887664 6899999964
No 286
>PRK09084 aspartate kinase III; Validated
Probab=25.51 E-value=2.2e+02 Score=33.56 Aligned_cols=61 Identities=11% Similarity=0.123 Sum_probs=42.2
Q ss_pred ccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHH------HHHHHHHHhccccCeeeeecccc
Q 002985 781 DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLE------SLVNACSSVDLILGVLGWSTGCS 848 (861)
Q Consensus 781 DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~------~L~~l~~~L~~I~gV~~Vs~g~~ 848 (861)
+.+|.+++|.++|++.++||.-+.+. ...+.|+|+ .+.. ...+++..++++. -+.+..+|+
T Consensus 318 ~~~g~~a~if~~l~~~~I~Vd~I~ss------e~sIs~~i~~~~~~~~~~~~~~~~l~~el~~~~-~i~~~~~va 385 (448)
T PRK09084 318 HARGFLAEVFGILARHKISVDLITTS------EVSVSLTLDTTGSTSTGDTLLTQALLTELSQLC-RVEVEEGLA 385 (448)
T ss_pred ccccHHHHHHHHHHHcCCeEEEEecc------CcEEEEEEechhhhhhhhHHHHHHHHHHHhcCC-eEEEECCeE
Confidence 67899999999999999999988632 145788888 5533 2356777776532 233444444
No 287
>PRK12705 hypothetical protein; Provisional
Probab=25.04 E-value=58 Score=39.14 Aligned_cols=35 Identities=43% Similarity=0.644 Sum_probs=26.9
Q ss_pred CCCccchHHHHHHHHH----HcCCCHH-HHHHHhhccccc
Q 002985 168 GEPFIIHPVEVARILG----ELELDWE-SIAAGLLHDTVE 202 (861)
Q Consensus 168 GePYi~Hpl~VA~ILa----~l~lD~~-ti~AALLHDvvE 202 (861)
|...+.|.++||.+.. .+|+|.+ ...||||||+=.
T Consensus 321 gqnvl~HSl~VA~lA~~LA~~lGld~d~a~~AGLLHDIGK 360 (508)
T PRK12705 321 GQNVLSHSLEVAHLAGIIAAEIGLDPALAKRAGLLHDIGK 360 (508)
T ss_pred CchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCC
Confidence 4556789999998753 5788876 468999999753
No 288
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=24.92 E-value=3.1e+02 Score=27.21 Aligned_cols=65 Identities=9% Similarity=0.142 Sum_probs=44.6
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHH-HHhccccCeeeeec
Q 002985 775 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNAC-SSVDLILGVLGWST 845 (861)
Q Consensus 775 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~-~~L~~I~gV~~Vs~ 845 (861)
+.|.+.+ ++-..++...|++.- .|..+...+ |.+.+.+.+. .|.++|.+++ .+|..++||.++.+
T Consensus 73 v~v~v~~-~~~~~~~~~~l~~~p-~V~~~~~~t----G~~dl~~~v~~~d~~~l~~~~~~~l~~~~gV~~~~t 139 (153)
T PRK11179 73 IGIILKS-AKDYPSALAKLESLD-EVVEAYYTT----GHYSIFIKVMCRSIDALQHVLINKIQTIDEIQSTET 139 (153)
T ss_pred EEEEEcc-cccHHHHHHHHhCCC-CEEEEEEcc----cCCCEEEEEEECCHHHHHHHHHHHhhcCCCeeeEEE
Confidence 4444432 344577888887642 355555442 3466777777 8999999986 78999999998765
No 289
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=24.76 E-value=1.6e+02 Score=34.95 Aligned_cols=65 Identities=20% Similarity=0.230 Sum_probs=44.7
Q ss_pred ccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhcc-ccCeeeeeccccC
Q 002985 781 DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDL-ILGVLGWSTGCSW 849 (861)
Q Consensus 781 DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~-I~gV~~Vs~g~~~ 849 (861)
+.+|++++|.++++++++|+.-+....+. ..+.|++. .+.....+++.+... ..+-.++..+|+.
T Consensus 319 ~~~g~~a~vf~~l~~~~i~v~~I~q~~~~----~~i~~~v~~~~~~~a~~~l~~~~~~~~~~v~~~~~~a~ 385 (447)
T COG0527 319 GMVGFAARVFGILAEAGINVDLITQSISE----VSISFTVPESDAPRALRALLEEKLELLAEVEVEEGLAL 385 (447)
T ss_pred ccccHHHHHHHHHHHcCCcEEEEEeccCC----CeEEEEEchhhHHHHHHHHHHHHhhhcceEEeeCCeeE
Confidence 34699999999999999999988655332 22899999 776666666555543 2224555555553
No 290
>PRK08210 aspartate kinase I; Reviewed
Probab=24.39 E-value=1.5e+02 Score=34.23 Aligned_cols=54 Identities=28% Similarity=0.356 Sum_probs=36.7
Q ss_pred EEEEEEE---eccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHH
Q 002985 773 QWFSVVC---IDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACS 832 (861)
Q Consensus 773 a~I~V~a---~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~ 832 (861)
+-|.|.+ .+++|+++++.++|++.++||....+. -..+.|-|. .|.+...+.+.
T Consensus 340 a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~~s------~~~is~vv~~~~~~~a~~~Lh 397 (403)
T PRK08210 340 AKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQSADS------HTTIWVLVKEEDMEKAVNALH 397 (403)
T ss_pred EEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEecC------CCEEEEEEcHHHHHHHHHHHH
Confidence 3455554 489999999999999999999864431 134666776 55555444443
No 291
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=24.06 E-value=62 Score=38.95 Aligned_cols=32 Identities=41% Similarity=0.501 Sum_probs=24.8
Q ss_pred CccchHHHHHHHH----HHcCCCHHH-HHHHhhcccc
Q 002985 170 PFIIHPVEVARIL----GELELDWES-IAAGLLHDTV 201 (861)
Q Consensus 170 PYi~Hpl~VA~IL----a~l~lD~~t-i~AALLHDvv 201 (861)
..+.|.+.||.+. ..+|+|.+. ..||||||+=
T Consensus 329 ~~l~Hs~~VA~lA~~LA~~lgld~~~a~~AGLLHDIG 365 (514)
T TIGR03319 329 NVLQHSIEVAHLAGIMAAELGEDVKLAKRAGLLHDIG 365 (514)
T ss_pred cHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcC
Confidence 3578999999874 357888764 5799999973
No 292
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=24.06 E-value=1.2e+02 Score=31.23 Aligned_cols=33 Identities=27% Similarity=0.303 Sum_probs=24.7
Q ss_pred CCCccchHHHHHHHHHHcCCCHHH-HHHHhhccc
Q 002985 168 GEPFIIHPVEVARILGELELDWES-IAAGLLHDT 200 (861)
Q Consensus 168 GePYi~Hpl~VA~ILa~l~lD~~t-i~AALLHDv 200 (861)
.+|-|.|.++.|+..+.-.-|.+- =.+||+||.
T Consensus 94 Depni~Ha~QtAE~iR~~~Pd~dWlHLtaLiHDL 127 (204)
T KOG1573|consen 94 DEPNIQHALQTAEAIRKDYPDEDWLHLTALIHDL 127 (204)
T ss_pred chHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 578999999999988765444443 357899985
No 293
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=23.91 E-value=1.7e+02 Score=25.25 Aligned_cols=60 Identities=13% Similarity=0.079 Sum_probs=41.2
Q ss_pred eeeecCCCce--EecCCCCcHHHHHHhhccccccce--EEEEECCEecCCCc-----cCCCCCeEEEEe
Q 002985 541 VFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGNKM--VAAKVNGNLVSPTH-----VLANAEVVEIIT 600 (861)
Q Consensus 541 I~VftP~G~i--~~lp~gaT~lDfAy~iht~ig~~~--~~akVng~~v~l~~-----~L~~gd~VeIit 600 (861)
|||-|++|+. +++....|+.|+=..|....|-.+ ..-.-+|+...-+. -+++|++|.+.-
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNL 69 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 6899999985 688888999998777765554322 12234676554433 368888888764
No 294
>PRK00110 hypothetical protein; Validated
Probab=23.51 E-value=98 Score=33.73 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=50.5
Q ss_pred EEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeeecc
Q 002985 777 VVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWSTG 846 (861)
Q Consensus 777 V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~Vs~g 846 (861)
++.+=.+--|..|...|.+.|..|.+..+.-.. . -.+.|+ .+.+++.+++++|+..++|.+|-.-
T Consensus 169 ~~i~~~p~~~~~v~~~L~~~g~~~~~sei~~~P-~----~~v~l~~e~~~~~~~li~~Led~dDVq~Vy~N 234 (245)
T PRK00110 169 FEVITAPEDFEAVRDALEAAGLEAESAEVTMIP-Q----NTVELDEETAEKLLKLIDALEDLDDVQNVYHN 234 (245)
T ss_pred EEEEECHHHHHHHHHHHHHcCCCeeeeEEEEec-C----CCcccCHHHHHHHHHHHHHHhcCCCcceEeEC
Confidence 445557888999999999999999877665332 1 234456 7889999999999999999999754
No 295
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=23.40 E-value=52 Score=37.21 Aligned_cols=34 Identities=32% Similarity=0.349 Sum_probs=25.1
Q ss_pred CCccchHHHHHHHHH----HcCCCHH-HHHHHhhccccc
Q 002985 169 EPFIIHPVEVARILG----ELELDWE-SIAAGLLHDTVE 202 (861)
Q Consensus 169 ePYi~Hpl~VA~ILa----~l~lD~~-ti~AALLHDvvE 202 (861)
++.+.|.+.||.+.. .+|+|.+ ..+||||||+=.
T Consensus 195 ~~~~~HSl~VA~~A~~LA~~~g~d~~~a~~AGLLHDIGK 233 (342)
T PRK07152 195 EYRYKHCLRVAQLAAELAKKNNLDPKKAYYAGLYHDITK 233 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhhc
Confidence 455789999997653 4577654 578999999753
No 296
>PLN02551 aspartokinase
Probab=23.36 E-value=2.4e+02 Score=34.11 Aligned_cols=51 Identities=14% Similarity=0.284 Sum_probs=37.8
Q ss_pred ccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHH-------HHHHHHHHhccc
Q 002985 781 DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLE-------SLVNACSSVDLI 837 (861)
Q Consensus 781 DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~-------~L~~l~~~L~~I 837 (861)
+.+|.++.|.++|++.++||.-+.+. ...+.|+|. .+.. .|.+++..|+++
T Consensus 378 ~~~g~~arvf~~l~~~~I~Vd~IssS------e~sIs~~v~~~~~~~~~~i~~~l~~l~~el~~~ 436 (521)
T PLN02551 378 GQYGFLAKVFSTFEDLGISVDVVATS------EVSISLTLDPSKLWSRELIQQELDHLVEELEKI 436 (521)
T ss_pred CcccHHHHHHHHHHHcCCcEEEEecc------CCEEEEEEehhHhhhhhhHHHHHHHHHHHhhcC
Confidence 68899999999999999999988532 134778888 5542 355666667654
No 297
>PRK09181 aspartate kinase; Validated
Probab=22.87 E-value=2e+02 Score=34.43 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=41.0
Q ss_pred eEEEEEEEe--ccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHH
Q 002985 772 IQWFSVVCI--DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACS 832 (861)
Q Consensus 772 ~a~I~V~a~--DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~ 832 (861)
.+-|.|++. .++|+.+.+.++|++.+|||..+...+ .-..+.|.|. .|.+...+.+.
T Consensus 402 ~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg~----se~~Is~vV~~~d~~~Av~~lH 461 (475)
T PRK09181 402 VAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQSM----RQVNMQFVVDEDDYEKAICALH 461 (475)
T ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEecC----CcceEEEEEeHHHHHHHHHHHH
Confidence 345666653 389999999999999999999886542 2345777788 66665555443
No 298
>PF14473 RD3: RD3 protein
Probab=22.81 E-value=70 Score=31.72 Aligned_cols=57 Identities=23% Similarity=0.334 Sum_probs=43.4
Q ss_pred cccCCCCcccccccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002985 279 RTLSHMPPHKQSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIED 336 (861)
Q Consensus 279 RtL~~~~~~kq~ELEdL~f~~l~p~~y~~i~~~l~~~~~~~~~~i~~~~~~L~~~L~~ 336 (861)
|.-..+++..|.+|||||=+ +.|..-..+-.++.++..+.+....++..+.+..|.+
T Consensus 67 r~~~~i~~~ErlqLE~lCsk-i~P~~~g~vI~RFRellae~e~~~~Ev~~iFr~vl~e 123 (133)
T PF14473_consen 67 RPSYQISPGERLQLEDLCSK-IPPCECGPVISRFRELLAENEPEVWEVPRIFRSVLQE 123 (133)
T ss_pred CccCCCCHHHHHHHHHHHhc-CChhhhHHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 55566778888999999966 8899888888888888777766666666666666543
No 299
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=22.71 E-value=3.5e+02 Score=24.33 Aligned_cols=62 Identities=8% Similarity=0.124 Sum_probs=41.3
Q ss_pred ceeeecCCCce--EecCCCCcHHHHHHhh--ccccccceEEEEECCEecCCCc-----cCCCCCeEEEEec
Q 002985 540 RVFVFTPRGEI--KNLPKGATVVDYAYMI--HTEIGNKMVAAKVNGNLVSPTH-----VLANAEVVEIITY 601 (861)
Q Consensus 540 ~I~VftP~G~i--~~lp~gaT~lDfAy~i--ht~ig~~~~~akVng~~v~l~~-----~L~~gd~VeIit~ 601 (861)
.|+|-+++|+. +.+....|..++.-++ ...+--.-..-.-||+.+..+. -+++||+|+++..
T Consensus 13 ~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~ 83 (87)
T cd01763 13 NLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLE 83 (87)
T ss_pred EEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEe
Confidence 57899999986 4556667777774444 3333333344445777776554 4799999999864
No 300
>PLN02551 aspartokinase
Probab=21.79 E-value=2.3e+02 Score=34.20 Aligned_cols=56 Identities=20% Similarity=0.137 Sum_probs=39.8
Q ss_pred EEEEEEE--eccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHH
Q 002985 773 QWFSVVC--IDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACS 832 (861)
Q Consensus 773 a~I~V~a--~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~ 832 (861)
+-|.|.+ ...+|+++++.++|++.+|||..++..+ ....+.|.|. .|.+...+.+.
T Consensus 446 AiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga----SeinIS~vV~~~d~~~Av~aLH 504 (521)
T PLN02551 446 SIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA----SKVNISLIVNDDEAEQCVRALH 504 (521)
T ss_pred EEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC----CCcEEEEEEeHHHHHHHHHHHH
Confidence 3455543 4688999999999999999998886432 2355788888 66665555443
No 301
>PRK12378 hypothetical protein; Provisional
Probab=20.94 E-value=1.1e+02 Score=33.22 Aligned_cols=62 Identities=13% Similarity=0.046 Sum_probs=48.3
Q ss_pred EEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeee
Q 002985 778 VCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWS 844 (861)
Q Consensus 778 ~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~Vs 844 (861)
+.+=.+.-|..|...|.+.|..|.+..+.-.. .-.+.|+ .+.+++.+++++|+..++|.+|-
T Consensus 169 ~i~t~p~~~~~v~~~L~~~g~~~~~sei~~~P-----~~~v~l~~e~~~~~~~li~~Led~dDVq~Vy 231 (235)
T PRK12378 169 TVYTDPTDFHKVKKALEAAGIEFLVAELEMIP-----QNPVELSGEDLEQFEKLLDALEDDDDVQNVY 231 (235)
T ss_pred EEEECHHHHHHHHHHHHHcCCCceeeEEEEec-----CCCccCCHHHHHHHHHHHHHHhcCCCcccee
Confidence 44556888999999999999998877665322 1234556 78899999999999999999885
No 302
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=20.82 E-value=99 Score=33.06 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=33.0
Q ss_pred eEecC-CCCcHHHHHHhhc----cccccc-------e--EEEEECCEec-CCCccCCC--CCeEEEEec
Q 002985 550 IKNLP-KGATVVDYAYMIH----TEIGNK-------M--VAAKVNGNLV-SPTHVLAN--AEVVEIITY 601 (861)
Q Consensus 550 i~~lp-~gaT~lDfAy~ih----t~ig~~-------~--~~akVng~~v-~l~~~L~~--gd~VeIit~ 601 (861)
-+++| .|.|++|++..|+ +.++.+ | =+++|||+.+ .-.++++. |+++.|-.-
T Consensus 21 ~v~~~~~~~tvl~~L~~~~~~~~~~l~~~~~c~~g~Cg~C~v~vnG~~~laC~t~~~~~~~~~~tiepl 89 (232)
T PRK05950 21 EVDVDECGPMVLDALIKIKNEIDPTLTFRRSCREGVCGSDAMNINGKNGLACITPISDLKKGKIVIRPL 89 (232)
T ss_pred EeCCCCCCCHHHHHHHHhCCccCCcceeeCCCCCCCCCCCEEEECCcCccchhChHhHcCCCeEEEEEC
Confidence 45677 8999999999996 223222 1 1689999863 23444444 456655443
No 303
>TIGR02793 nikR nickel-responsive transcriptional regulator NikR. Three members of the seed for this model, from Escherichia coli, Pseudomonas putida, and Brucella melitensis, are found associated with a nickel ABC transporter operon that acts to import nickel for use as a cofactor in urease or hydrogenase. These proteins, with characterized nickel-binding and DNA-binding domains, act as nickel-responsive transcriptional regulators. In the larger family of full-length homologs, most others both lack proximity to the nickel ABC transporter operon and form a separate clade. Several of the homologs not within the scope of this model, but rather scoring between the trusted and noise cutoffs, have been shown to bind nickel, copper, or both, and to regulate genes in response to nickel.
Probab=20.67 E-value=8.2e+02 Score=24.08 Aligned_cols=81 Identities=10% Similarity=0.009 Sum_probs=53.2
Q ss_pred ccCCCCCceeEEEEEEEecc--ccHHHHHHHHHHhCCccee-eeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccccC
Q 002985 763 TWHNLEGHSIQWFSVVCIDR--RGIMADVTTALATVGVTIC-SCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILG 839 (861)
Q Consensus 763 ~W~~~~~~~~a~I~V~a~DR--~GlLadItsvIa~~~iNI~-sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~g 839 (861)
.|...++.-...|.+ .+|. +++-..++++--+..-.|. +..+.- +.....-.|.|+++.+++..+..+|..++|
T Consensus 43 ~~~~~~~~~~G~i~~-vYdH~~~~l~~~l~~iqH~~~d~Iiss~HvHl--d~~~ClEvivv~G~~~~I~~l~~~l~~~kG 119 (129)
T TIGR02793 43 AAEQHGTACVAVLSY-TYDHSKRDLPRRLTQTQHHHHDLSVATLHVHL--DHDDCLEVSVLKGDMGDVQHFADHVIAERG 119 (129)
T ss_pred hhhcCCCeEEEEEEE-EEeCCchhHHHHHHHHHHhhccEEEEEEEEec--CCCceEEEEEEEcCHHHHHHHHHHHHhcCC
Confidence 576443322334444 4444 4788888888877655554 344432 223355566666999999999999999999
Q ss_pred eeeeecc
Q 002985 840 VLGWSTG 846 (861)
Q Consensus 840 V~~Vs~g 846 (861)
|.-+..-
T Consensus 120 V~~~~l~ 126 (129)
T TIGR02793 120 VRHGHLQ 126 (129)
T ss_pred eeEEEEE
Confidence 9886643
No 304
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=20.55 E-value=1.3e+02 Score=38.08 Aligned_cols=56 Identities=25% Similarity=0.274 Sum_probs=41.3
Q ss_pred eecCCCceEecCCCCcHHHHHHhhccccccceE-------------EEEECCEe--c-CCCccCCCCCeEEE
Q 002985 543 VFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMV-------------AAKVNGNL--V-SPTHVLANAEVVEI 598 (861)
Q Consensus 543 VftP~G~i~~lp~gaT~lDfAy~iht~ig~~~~-------------~akVng~~--v-~l~~~L~~gd~VeI 598 (861)
-+|=||+.+++|+|.|++|.|...+..+-+-|. -+.|+|.. + .=.+++++|.+|+=
T Consensus 6 ~~~idg~~~~~~~g~til~aa~~~gi~ip~~C~~~~l~~~g~Cr~C~Vev~g~~~~~~aC~t~v~~gm~V~t 77 (797)
T PRK07860 6 TLTIDGVEVSVPKGTLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEVEGQRKPQASCTTTVTDGMVVKT 77 (797)
T ss_pred EEEECCEEEEeCCCChHHHHHHHcCCCCCeecCCCCCCCCcccCccEEEECCCcccccccCCCCCCCcEEEe
Confidence 345699999999999999999887666555542 25678863 2 34567899988764
No 305
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=20.30 E-value=1.3e+02 Score=37.19 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=42.2
Q ss_pred eecCCCceEecCCCCcHHHHHHhhccccccceE-----------E--EEECCEe---cCCCccCCCCCeEEEEe
Q 002985 543 VFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMV-----------A--AKVNGNL---VSPTHVLANAEVVEIIT 600 (861)
Q Consensus 543 VftP~G~i~~lp~gaT~lDfAy~iht~ig~~~~-----------~--akVng~~---v~l~~~L~~gd~VeIit 600 (861)
-||=||+.++.|+|.|.+++|...+..+-+.|. . +.|||.. ..=.+++++|..|+--+
T Consensus 5 ~~~idg~~~~~~~g~ti~~a~~~~g~~ip~~c~~~~~~~~g~C~~C~V~v~g~~~~~~aC~t~~~~Gm~v~t~~ 78 (652)
T PRK12814 5 SLTINGRSVTAAPGTSILEAAASAGITIPTLCFHQELEATGSCWMCIVEIKGKNRFVPACSTAVSEGMVIETEN 78 (652)
T ss_pred EEEECCEEEEeCCcCcHHHHHHHcCCccccccCCCCCCCccccceeEEEECCCcceecCcCCCCCCCCEEEeCc
Confidence 367899999999999999999886555433332 2 5778853 24456889999887644
No 306
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=20.16 E-value=72 Score=26.27 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=17.2
Q ss_pred cccCCceeeecCCCceEecCCC
Q 002985 535 DLLGSRVFVFTPRGEIKNLPKG 556 (861)
Q Consensus 535 dl~~~~I~VftP~G~i~~lp~g 556 (861)
++..+.++|+||+|+.+.+|..
T Consensus 2 ei~~~~aiVlT~dGeF~~ik~~ 23 (56)
T PF12791_consen 2 EIKKKYAIVLTPDGEFIKIKRK 23 (56)
T ss_pred cCcCCEEEEEcCCCcEEEEeCC
Confidence 3456789999999998877654
No 307
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=20.05 E-value=1.9e+02 Score=32.75 Aligned_cols=42 Identities=21% Similarity=0.284 Sum_probs=29.6
Q ss_pred eEecCCCCcHHHHHHhhcccc-c---cc--e-------EEEEECCEecCC-CccCC
Q 002985 550 IKNLPKGATVVDYAYMIHTEI-G---NK--M-------VAAKVNGNLVSP-THVLA 591 (861)
Q Consensus 550 i~~lp~gaT~lDfAy~iht~i-g---~~--~-------~~akVng~~v~l-~~~L~ 591 (861)
-+++++|.|++|++..|+.++ + .+ | =+.+|||+.+-- .+.+.
T Consensus 22 ~v~~~~~~tvL~~l~~i~~~~d~tL~~~~~c~~~~Cg~C~v~inG~~~laC~t~v~ 77 (329)
T PRK12577 22 TLEVEPGNTILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRINGRSALACKENVG 77 (329)
T ss_pred EEECCCCChHHHHHHHhCCcCCCCcEEcCCCCCCCCCCCEEEECCeeecCcccchh
Confidence 457789999999999998776 3 11 2 258999986542 44454
Done!