Query 002985
Match_columns 861
No_of_seqs 395 out of 2397
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 09:03:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002985.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002985hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vj7_A Bifunctional RELA/SPOT; 100.0 1.6E-92 5.5E-97 788.8 19.9 354 123-529 5-382 (393)
2 2be3_A GTP pyrophosphokinase; 100.0 3.7E-37 1.3E-41 321.2 17.5 162 347-538 43-213 (226)
3 3l9d_A SMU.1046C, putative GTP 100.0 2.5E-35 8.5E-40 311.0 17.4 166 269-474 22-195 (255)
4 3nqw_A CG11900; stringent resp 100.0 3.6E-33 1.2E-37 281.7 5.5 132 143-288 3-138 (179)
5 3nr1_A HD domain-containing pr 100.0 1.7E-32 5.7E-37 276.5 6.7 135 144-293 2-140 (178)
6 3hvz_A Uncharacterized protein 99.9 1.6E-22 5.4E-27 177.3 7.1 70 535-604 2-71 (78)
7 2eki_A DRG 1, developmentally- 99.5 7.4E-14 2.5E-18 125.3 7.5 65 539-603 10-89 (93)
8 2kmm_A Guanosine-3',5'-BIS(dip 99.3 3.9E-12 1.3E-16 109.0 8.2 65 540-604 2-66 (73)
9 1wwt_A Threonyl-tRNA synthetas 99.2 1.8E-11 6.1E-16 109.1 5.3 66 539-604 10-76 (88)
10 1wxq_A GTP-binding protein; st 98.9 2.6E-10 9E-15 128.1 3.8 64 539-602 318-396 (397)
11 1tke_A Threonyl-tRNA synthetas 98.9 6.2E-10 2.1E-14 115.7 5.8 62 541-602 2-63 (224)
12 2ko1_A CTR148A, GTP pyrophosph 98.9 1E-08 3.5E-13 89.8 11.5 74 771-846 4-78 (88)
13 1y7p_A Hypothetical protein AF 98.7 3.2E-08 1.1E-12 101.6 8.1 72 772-846 4-79 (223)
14 2f1f_A Acetolactate synthase i 98.6 1.7E-07 5.8E-12 93.1 10.7 73 774-846 5-77 (164)
15 2pc6_A Probable acetolactate s 98.4 6.5E-07 2.2E-11 89.0 9.9 73 774-846 6-78 (165)
16 1zpv_A ACT domain protein; str 98.4 4.2E-07 1.4E-11 80.4 6.9 71 772-844 5-76 (91)
17 2jhe_A Transcription regulator 98.1 6.9E-06 2.4E-10 80.3 8.8 68 774-846 2-70 (190)
18 2fgc_A Acetolactate synthase, 97.8 0.0001 3.5E-09 74.7 10.6 84 762-845 18-102 (193)
19 1qf6_A THRRS, threonyl-tRNA sy 97.3 0.0001 3.5E-09 87.6 4.2 62 541-602 2-63 (642)
20 1nyr_A Threonyl-tRNA synthetas 97.2 0.00013 4.6E-09 86.7 3.7 63 540-602 3-65 (645)
21 4a9a_A Ribosome-interacting GT 97.2 0.00063 2.1E-08 75.9 8.2 62 539-600 299-375 (376)
22 2l32_A Small archaeal modifier 96.8 0.0008 2.7E-08 58.1 3.5 59 541-602 5-63 (74)
23 1f0z_A THis protein; ubiquitin 96.7 0.0018 6.1E-08 54.3 5.5 53 547-601 6-62 (66)
24 1tyg_B YJBS; alpha beta barrel 96.7 0.0023 8E-08 56.9 6.2 55 545-601 24-83 (87)
25 2nyi_A Unknown protein; protei 96.7 0.0054 1.9E-07 62.0 9.7 63 772-834 93-162 (195)
26 2ohf_A Protein OLA1, GTP-bindi 96.7 0.0016 5.5E-08 73.1 6.1 64 539-602 304-389 (396)
27 2dby_A GTP-binding protein; GD 96.7 0.0014 4.7E-08 73.0 5.5 62 539-600 283-366 (368)
28 2hj1_A Hypothetical protein; s 96.6 0.00092 3.1E-08 60.7 3.2 58 550-607 29-91 (97)
29 1jal_A YCHF protein; nucleotid 96.6 0.0013 4.3E-08 73.1 5.1 62 539-600 278-361 (363)
30 1rws_A Hypothetical protein PF 96.6 0.00074 2.5E-08 58.5 2.2 56 543-600 17-72 (77)
31 1sc6_A PGDH, D-3-phosphoglycer 96.5 0.0077 2.6E-07 67.7 10.6 70 773-844 332-401 (404)
32 1u8s_A Glycine cleavage system 96.4 0.01 3.4E-07 59.5 9.5 65 772-836 93-167 (192)
33 3lou_A Formyltetrahydrofolate 96.4 0.01 3.5E-07 64.0 9.7 64 773-836 11-81 (292)
34 3o1l_A Formyltetrahydrofolate 96.3 0.015 5.2E-07 62.9 11.1 64 773-836 23-91 (302)
35 1ryj_A Unknown; beta/alpha pro 96.3 0.0046 1.6E-07 52.5 5.5 59 541-601 7-66 (70)
36 1u8s_A Glycine cleavage system 96.3 0.011 3.6E-07 59.3 9.1 62 773-836 7-68 (192)
37 2cu3_A Unknown function protei 96.3 0.0066 2.3E-07 50.5 6.1 52 547-601 5-60 (64)
38 3n0v_A Formyltetrahydrofolate 96.3 0.016 5.6E-07 62.2 10.6 67 773-839 9-79 (286)
39 3obi_A Formyltetrahydrofolate 96.2 0.013 4.6E-07 62.9 9.7 64 773-836 7-75 (288)
40 2kl0_A Putative thiamin biosyn 96.1 0.0053 1.8E-07 52.8 4.7 54 547-603 6-63 (73)
41 2k5p_A THis protein, thiamine- 96.1 0.0043 1.5E-07 54.0 4.1 56 547-603 6-67 (78)
42 3nrb_A Formyltetrahydrofolate 95.9 0.022 7.7E-07 61.2 9.4 67 773-839 8-77 (287)
43 1ygy_A PGDH, D-3-phosphoglycer 95.8 0.015 5.3E-07 67.4 8.2 69 774-844 456-524 (529)
44 1ni3_A YCHF GTPase, YCHF GTP-b 95.6 0.0054 1.8E-07 68.8 3.3 65 535-600 303-389 (392)
45 2nyi_A Unknown protein; protei 95.3 0.056 1.9E-06 54.4 9.5 63 773-837 6-72 (195)
46 3k5p_A D-3-phosphoglycerate de 95.2 0.058 2E-06 60.9 10.1 72 772-845 343-414 (416)
47 2q5w_D Molybdopterin convertin 95.2 0.015 5.1E-07 49.7 4.1 52 549-600 18-72 (77)
48 3p96_A Phosphoserine phosphata 95.2 0.053 1.8E-06 60.3 9.7 76 773-850 13-94 (415)
49 2f06_A Conserved hypothetical 95.0 0.081 2.8E-06 50.3 9.0 59 773-834 7-65 (144)
50 3po0_A Small archaeal modifier 94.7 0.044 1.5E-06 48.1 5.8 51 550-600 21-84 (89)
51 1vjk_A Molybdopterin convertin 94.5 0.038 1.3E-06 49.7 4.9 52 549-600 29-93 (98)
52 2f06_A Conserved hypothetical 94.2 0.15 5E-06 48.5 8.7 57 774-833 74-130 (144)
53 2re1_A Aspartokinase, alpha an 93.6 0.25 8.4E-06 48.4 9.3 68 772-840 25-94 (167)
54 1fm0_D Molybdopterin convertin 93.2 0.12 4.1E-06 44.3 5.6 47 554-600 23-76 (81)
55 3mtj_A Homoserine dehydrogenas 92.8 0.16 5.6E-06 57.7 7.5 70 774-843 361-432 (444)
56 2dt9_A Aspartokinase; protein- 90.9 0.6 2E-05 45.6 8.2 64 773-836 17-83 (167)
57 1rwu_A Hypothetical UPF0250 pr 90.8 1.1 3.9E-05 41.3 9.4 67 774-843 38-108 (109)
58 2g1e_A Hypothetical protein TA 90.5 0.27 9.3E-06 42.8 4.8 51 550-600 18-85 (90)
59 2qmx_A Prephenate dehydratase; 89.6 1.6 5.6E-05 46.6 10.9 67 772-838 200-269 (283)
60 2dtj_A Aspartokinase; protein- 89.1 1.3 4.4E-05 43.8 9.1 65 772-836 15-82 (178)
61 3s1t_A Aspartokinase; ACT doma 88.4 1 3.5E-05 44.8 7.9 58 778-835 23-82 (181)
62 2jsx_A Protein NAPD; TAT, proo 88.3 0.93 3.2E-05 40.8 6.6 69 772-848 7-77 (95)
63 3dwg_C 9.5 kDa culture filtrat 86.4 0.89 3E-05 40.0 5.3 49 551-600 21-88 (93)
64 3rpf_C Molybdopterin convertin 86.3 0.74 2.5E-05 39.0 4.6 51 549-600 14-69 (74)
65 2l52_A Methanosarcina acetivor 86.2 0.72 2.5E-05 41.4 4.7 50 550-600 22-94 (99)
66 2qmw_A PDT, prephenate dehydra 85.0 2.3 7.8E-05 45.1 8.6 66 773-838 187-257 (267)
67 3mwb_A Prephenate dehydratase; 84.5 3 0.0001 45.2 9.4 66 772-837 201-270 (313)
68 1phz_A Protein (phenylalanine 82.4 3.7 0.00013 46.2 9.3 75 772-847 34-111 (429)
69 4go7_X Aspartokinase; transfer 82.2 3.3 0.00011 42.0 8.1 66 772-837 35-103 (200)
70 3ab4_A Aspartokinase; aspartat 81.2 6.3 0.00022 44.1 10.8 77 772-848 264-345 (421)
71 1v8c_A MOAD related protein; r 81.0 1.9 6.4E-05 42.7 5.6 52 550-602 17-84 (168)
72 2nzc_A Hypothetical protein; s 80.9 10 0.00035 33.5 9.6 70 772-841 7-76 (86)
73 2h9z_A Hypothetical protein HP 79.3 2.7 9.4E-05 36.9 5.5 67 774-843 17-85 (86)
74 3luy_A Probable chorismate mut 78.4 7 0.00024 42.6 9.6 57 781-837 217-276 (329)
75 2qjl_A URM1, ubiquitin-related 76.1 4.2 0.00014 36.2 6.0 50 551-600 24-94 (99)
76 2dt9_A Aspartokinase; protein- 75.3 6.4 0.00022 38.2 7.5 56 772-833 95-154 (167)
77 1tdj_A Biosynthetic threonine 74.6 3.3 0.00011 47.9 6.0 63 772-837 338-402 (514)
78 3mah_A Aspartokinase; aspartat 73.7 4.6 0.00016 38.8 6.0 68 772-848 18-89 (157)
79 2lqj_A Mg2+ transport protein; 72.8 7.3 0.00025 34.8 6.5 69 775-844 11-84 (94)
80 2zbc_A 83AA long hypothetical 72.3 11 0.00039 31.4 7.5 70 774-850 5-76 (83)
81 2dtj_A Aspartokinase; protein- 71.4 8.4 0.00029 37.9 7.4 56 772-833 95-154 (178)
82 2wvf_A Hpnikr, putative nickel 71.0 45 0.0015 32.0 12.2 84 762-846 52-139 (148)
83 2re1_A Aspartokinase, alpha an 70.7 9.3 0.00032 37.0 7.4 52 772-829 103-158 (167)
84 2hza_A Nickel-responsive regul 68.8 41 0.0014 31.6 11.2 85 762-847 43-128 (133)
85 2cvi_A 75AA long hypothetical 66.9 20 0.0007 30.2 8.0 65 774-845 5-71 (83)
86 2bj7_A Nickel responsive regul 65.2 64 0.0022 30.4 11.8 85 763-848 46-131 (138)
87 3s1t_A Aspartokinase; ACT doma 63.0 15 0.00053 36.2 7.4 58 772-835 96-157 (181)
88 2ibn_A Inositol oxygenase; red 63.0 5.6 0.00019 41.5 4.1 52 149-200 38-90 (250)
89 3djb_A Hydrolase, HD family; a 61.8 10 0.00035 38.9 5.9 53 147-202 5-62 (223)
90 3dto_A BH2835 protein; all alp 60.5 10 0.00035 38.9 5.7 53 147-202 5-62 (223)
91 1wgk_A Riken cDNA 2900073H19 p 59.9 11 0.00039 34.7 5.3 52 551-602 34-105 (114)
92 3l76_A Aspartokinase; alloster 59.5 34 0.0012 40.1 10.6 76 773-848 445-528 (600)
93 3fm8_A Kinesin-like protein KI 59.3 6.7 0.00023 36.7 3.7 24 576-599 91-114 (124)
94 2k9x_A Tburm1, uncharacterized 58.9 12 0.00041 34.3 5.3 52 550-601 24-98 (110)
95 2pq7_A Predicted HD superfamil 57.6 17 0.00059 36.6 6.8 50 148-200 14-68 (220)
96 3p96_A Phosphoserine phosphata 56.7 24 0.00081 38.8 8.3 61 773-835 102-166 (415)
97 3gqs_A Adenylate cyclase-like 50.6 9.1 0.00031 34.3 3.0 39 544-598 54-92 (106)
98 2pn6_A ST1022, 150AA long hypo 49.4 42 0.0015 31.2 7.6 72 773-849 65-138 (150)
99 3b57_A LIN1889 protein; Q92AN1 49.4 16 0.00055 36.7 4.9 54 147-203 5-63 (209)
100 2qgs_A Protein Se1688; alpha-h 48.5 16 0.00056 37.1 4.9 54 147-203 5-64 (225)
101 2pjq_A Uncharacterized protein 48.3 17 0.00058 37.2 4.9 53 147-202 10-67 (231)
102 2k6p_A Uncharacterized protein 47.1 12 0.0004 32.7 3.0 24 577-600 28-51 (92)
103 1q5y_A NIKR, nickel responsive 46.5 1.4E+02 0.0049 25.7 9.9 73 773-846 6-79 (85)
104 1ndd_A NEDD8, protein (ubiquit 45.7 60 0.0021 26.1 7.1 62 540-601 2-72 (76)
105 2djw_A Probable transcriptiona 45.3 27 0.00092 30.0 5.1 64 775-845 6-71 (92)
106 2rjz_A PILO protein; structura 45.3 55 0.0019 31.3 7.7 64 781-844 43-109 (147)
107 3ccg_A HD superfamily hydrolas 44.8 12 0.00042 36.9 3.1 30 172-201 21-55 (190)
108 2o08_A BH1327 protein; putativ 44.5 12 0.00042 36.8 3.1 31 171-201 19-54 (188)
109 3l76_A Aspartokinase; alloster 42.9 66 0.0023 37.7 9.4 58 778-836 277-335 (600)
110 2dqb_A Deoxyguanosinetriphosph 42.5 14 0.00049 40.9 3.5 60 145-205 45-114 (376)
111 2ogi_A Hypothetical protein SA 41.7 14 0.00049 36.6 3.1 31 171-201 27-62 (196)
112 3a9j_A Ubiquitin; protein comp 41.3 76 0.0026 25.5 7.1 62 540-601 2-72 (76)
113 2cqz_A 177AA long hypothetical 38.9 19 0.00065 35.4 3.4 34 169-202 31-74 (177)
114 2cyy_A Putative HTH-type trans 38.8 78 0.0027 29.6 7.7 64 783-851 77-141 (151)
115 3tvi_A Aspartokinase; structur 38.3 35 0.0012 38.6 5.9 61 772-838 298-363 (446)
116 2e1c_A Putative HTH-type trans 38.1 70 0.0024 31.0 7.4 64 783-851 97-161 (171)
117 1dm9_A Hypothetical 15.5 KD pr 37.6 23 0.00078 33.4 3.6 25 577-601 36-60 (133)
118 4ejq_A Kinesin-like protein KI 37.6 17 0.0006 35.0 2.9 23 576-598 111-133 (154)
119 3ab4_A Aspartokinase; aspartat 37.2 53 0.0018 36.6 7.1 56 772-833 344-403 (421)
120 4go7_X Aspartokinase; transfer 36.0 41 0.0014 33.9 5.4 56 772-833 115-174 (200)
121 1wln_A Afadin; beta sandwich, 35.7 27 0.00091 32.0 3.7 25 576-600 81-105 (120)
122 3mgj_A Uncharacterized protein 35.4 93 0.0032 29.0 7.2 55 782-837 14-71 (118)
123 2gz4_A Hypothetical protein AT 35.1 22 0.00076 36.2 3.3 33 170-202 55-89 (207)
124 2cg4_A Regulatory protein ASNC 34.2 1.5E+02 0.0052 27.5 8.9 68 773-846 70-139 (152)
125 1zvp_A Hypothetical protein VC 33.1 90 0.0031 29.5 6.9 56 774-838 73-131 (133)
126 2cdq_A Aspartokinase; aspartat 32.5 69 0.0024 36.8 7.2 69 773-848 342-421 (510)
127 1uel_A HHR23B, UV excision rep 32.5 1.8E+02 0.0061 25.0 8.4 63 540-602 2-76 (95)
128 3a4r_A Nfatc2-interacting prot 31.7 1.4E+02 0.0047 25.1 7.3 61 540-600 9-79 (79)
129 2p5v_A Transcriptional regulat 31.2 1.2E+02 0.0042 28.5 7.8 68 773-845 72-141 (162)
130 2pie_A E3 ubiquitin-protein li 31.2 40 0.0014 31.6 4.1 25 576-600 76-102 (138)
131 3dhx_A Methionine import ATP-b 31.1 1.4E+02 0.0049 26.5 7.7 64 773-837 24-88 (106)
132 2wyq_A HHR23A, UV excision rep 30.5 1.4E+02 0.0046 24.8 7.1 63 540-602 7-81 (85)
133 3ced_A Methionine import ATP-b 30.0 2.7E+02 0.0093 24.4 9.3 64 775-838 23-89 (98)
134 1frr_A Ferredoxin I; electron 28.8 31 0.001 29.9 2.7 34 541-574 4-38 (95)
135 4h87_A Kanadaptin; FHA domain 28.6 33 0.0011 32.1 3.1 23 576-598 95-119 (130)
136 2csw_A Ubiquitin ligase protei 28.5 36 0.0012 32.2 3.4 25 576-600 84-110 (145)
137 3c1m_A Probable aspartokinase; 28.4 74 0.0025 36.0 6.5 57 772-832 318-378 (473)
138 1yx5_B Ubiquitin; proteasome, 27.3 1.6E+02 0.0055 25.3 7.2 63 540-602 2-73 (98)
139 2faz_A Ubiquitin-like containi 27.2 1.6E+02 0.0055 23.9 6.9 61 540-600 4-75 (78)
140 4f3q_A Transcriptional regulat 27.0 62 0.0021 33.8 5.0 63 780-847 177-240 (247)
141 2hek_A Hypothetical protein; p 26.9 30 0.001 38.2 2.8 33 170-202 50-88 (371)
142 2paq_A 5'-deoxynucleotidase YF 26.8 37 0.0013 34.2 3.2 35 168-202 29-74 (201)
143 2huo_A Inositol oxygenase; pro 26.8 54 0.0018 34.8 4.5 52 149-200 77-129 (289)
144 3phx_B Ubiquitin-like protein 26.5 1.9E+02 0.0065 23.6 7.3 61 540-600 6-75 (79)
145 3po8_A RV0020C protein, putati 26.5 26 0.00088 30.9 1.8 22 576-598 66-87 (100)
146 1lfp_A Hypothetical protein AQ 26.3 70 0.0024 33.5 5.3 66 779-849 173-240 (249)
147 3tvi_A Aspartokinase; structur 25.8 1.1E+02 0.0038 34.5 7.3 57 772-832 374-434 (446)
148 1i1g_A Transcriptional regulat 25.7 91 0.0031 28.4 5.6 59 783-846 74-134 (141)
149 1zhv_A Hypothetical protein AT 25.1 1E+02 0.0034 29.2 5.7 54 779-841 72-125 (134)
150 3mtn_B UBA80, ubcep1, ubiquiti 25.0 1.8E+02 0.0063 23.7 6.9 62 540-601 5-75 (85)
151 3c8y_A Iron hydrogenase 1; dit 24.8 47 0.0016 38.7 4.0 55 543-597 3-73 (574)
152 3k9o_B Ubiquitin, UBB+1; E2-25 24.7 2.2E+02 0.0074 24.2 7.5 63 540-602 3-74 (96)
153 1mw7_A Hypothetical protein HP 24.5 54 0.0018 34.1 4.0 62 779-845 175-237 (240)
154 2qsw_A Methionine import ATP-b 24.4 2.2E+02 0.0074 24.9 7.5 54 784-838 38-91 (100)
155 2dzi_A Ubiquitin-like protein 24.4 1E+02 0.0035 25.2 5.1 61 540-600 9-78 (81)
156 1p9k_A ORF, hypothetical prote 23.4 40 0.0014 28.5 2.4 22 577-598 48-70 (79)
157 1kon_A Protein YEBC, YEBC; alp 22.7 59 0.002 34.0 3.9 63 780-847 176-239 (249)
158 2qrr_A Methionine import ATP-b 22.6 2.3E+02 0.0078 24.8 7.4 64 775-838 26-91 (101)
159 4egx_A Kinesin-like protein KI 22.6 50 0.0017 32.8 3.2 22 577-598 142-163 (184)
160 1uwm_A Ferredoxin VI, FDVI; el 22.5 59 0.002 28.7 3.4 34 541-574 3-39 (106)
161 1wia_A Hypothetical ubiquitin- 22.4 2.8E+02 0.0096 23.6 7.8 62 540-602 9-78 (95)
162 2jqj_A DNA damage response pro 22.3 35 0.0012 32.5 2.0 25 576-600 88-113 (151)
163 2xt9_B Putative signal transdu 22.3 38 0.0013 30.7 2.1 22 576-598 74-95 (115)
164 1c05_A Ribosomal protein S4 de 22.1 61 0.0021 31.4 3.7 23 577-599 78-101 (159)
165 3tm8_A BD1817, uncharacterized 22.1 48 0.0017 35.6 3.3 34 167-200 162-205 (328)
166 1xlq_A Putidaredoxin, PDX; [2F 21.9 62 0.0021 28.6 3.4 35 541-575 3-40 (106)
167 1xx7_A Oxetanocin-like protein 21.9 59 0.002 32.3 3.6 34 169-202 36-79 (184)
168 3hx1_A SLR1951 protein; P74513 21.6 34 0.0011 32.0 1.6 22 576-598 83-104 (131)
169 3n3k_B Ubiquitin; hydrolase, p 21.6 2.1E+02 0.0072 23.4 6.6 62 540-601 5-75 (85)
170 1gxc_A CHK2, CDS1, serine/thre 21.4 39 0.0013 32.2 2.0 25 576-600 104-130 (149)
171 2bwf_A Ubiquitin-like protein 21.3 2.5E+02 0.0087 22.4 7.0 61 540-601 6-75 (77)
172 3lxf_A Ferredoxin; iron, iron- 21.1 72 0.0025 28.4 3.7 36 540-575 2-40 (104)
173 3gw7_A Uncharacterized protein 21.0 46 0.0016 34.4 2.7 32 172-203 27-63 (239)
174 2vqe_D 30S ribosomal protein S 20.7 64 0.0022 32.7 3.6 23 577-599 126-149 (209)
175 3c1m_A Probable aspartokinase; 20.7 86 0.003 35.5 5.1 56 773-832 405-464 (473)
176 1ynb_A Hypothetical protein AF 20.6 1E+02 0.0035 30.4 4.9 34 169-202 37-78 (173)
177 2uyz_B Small ubiquitin-related 20.6 1.2E+02 0.0042 24.7 4.9 62 540-601 5-75 (79)
178 1awd_A Ferredoxin; electron tr 20.4 60 0.0021 28.1 3.0 34 541-574 3-37 (94)
No 1
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=100.00 E-value=1.6e-92 Score=788.76 Aligned_cols=354 Identities=36% Similarity=0.598 Sum_probs=289.5
Q ss_pred CCCChHHHHHhhhhhhcCCChhhHHHHHHHHHHHHHhhcCCCcccCCCccchHHHHHHHHHHcCCCHHHHHHHhhccccc
Q 002985 123 KEDSPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVE 202 (861)
Q Consensus 123 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa~l~lD~~ti~AALLHDvvE 202 (861)
.+|+.+.+.+.+. .|+++.+.+.+.+|+.||.++|.||+|++|+|||.||++||.||+++++|.++++||||||++|
T Consensus 5 ~~~~~~~l~~~~~---~~~~~~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~~i~AALLHDvvE 81 (393)
T 1vj7_A 5 INLTGEEVVALAA---KYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVE 81 (393)
T ss_dssp CCCCHHHHHHHHH---HHSCHHHHHHHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHHHHHHHHHTTHHH
T ss_pred ccCCHHHHHHHHH---HhCCHHHHHHHHHHHHHHHHHhccCcCCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHhhhHHh
Confidence 4577777777664 6899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHhCHHHHHHHHhhcccccccccccccCCcchhhhhHHHHHHHHHhcccCceEEEEeeehhhhcccccC
Q 002985 203 DTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLS 282 (861)
Q Consensus 203 Dt~~~t~e~I~~~FG~~Va~LV~gvTkv~~l~~~~~~~~~~~~~~~qae~lRkmLLAm~~DiRVvLIKLADRLhNMRtL~ 282 (861)
||+ +|.++|++.||++|+.||+||||++++. +. .....|+|++|||||||++|+||++|||||||||||++.
T Consensus 82 Dt~-~t~e~I~~~FG~~Va~lV~gvTk~~~~~---~~----~~~~~qae~~Rkmllam~~D~RvvlIKLADRlhNmRtl~ 153 (393)
T 1vj7_A 82 DTD-ITLDNIEFDFGKDVRDIVDGVTKLGKVE---YK----SHEEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLK 153 (393)
T ss_dssp HSS-CCHHHHHHHHCHHHHHHHHHHHHHC---------------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC
T ss_pred cCC-CCHHHHHHHhCHHHHHHHHHHHhcccCC---cc----cHHHHHHHHHHHHHHhhcCCcceeeeeHHHHHHccCchh
Confidence 998 9999999999999999999999987764 21 234568999999999999999999999999999999999
Q ss_pred CCCcccc------------------------cccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002985 283 HMPPHKQ------------------------SELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQ 338 (861)
Q Consensus 283 ~~~~~kq------------------------~ELEdL~f~~l~p~~y~~i~~~l~~~~~~~~~~i~~~~~~L~~~L~~~~ 338 (861)
.+|+++| ||||||||+||+|+.|+.|+++|.+.+.+++++++++...|++.|.+.+
T Consensus 154 ~~~~ek~~~iA~Etl~iyaPLA~rLGi~~ik~ELEdl~f~~l~p~~y~~i~~~l~~~r~~r~~~i~~i~~~l~~~L~~~g 233 (393)
T 1vj7_A 154 HLRKDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEFYKISHMMNEKRREREALVDDIVTKIKSYTTEQG 233 (393)
T ss_dssp ------HHHHHHHHHHTHHHHHHHTTCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hCChHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999987 9999999999999999999999999999999999999999999998774
Q ss_pred hcccccceeEEEEeecChhHHHHHHHhcCCCcccccceeeEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccccCCCcc
Q 002985 339 FLDLMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRA 418 (861)
Q Consensus 339 ~l~~~~i~~~V~~R~K~~ySI~~Km~rk~~~~~ei~Dl~giRIIv~~~~~~~~~~~~~~~~dCY~vlg~vh~~~~pip~~ 418 (861)
+.+.|+||+|++||||+||+||+.+|++|+|++||||||++ .+|||.++|+||+.|+|+|++
T Consensus 234 ------i~~~v~~R~K~~~Si~~Km~rk~~~~~~i~Di~giRIi~~~------------~~dcy~vl~~i~~~~~~~~~~ 295 (393)
T 1vj7_A 234 ------LFGDVYGRPKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMET------------QSDVYAMVGYIHELWRPMPGR 295 (393)
T ss_dssp ------CCCEEEECCCCHHHHHHHHHHHGGGCCTTGGGCEEEEEESS------------HHHHHHHHHHHHHHSCBCTTC
T ss_pred ------CceEEEEEeCChHHHHHHHHHhCCChhhhcccceEEEEECC------------HHHHHHHHHHHHhcCCCCCCc
Confidence 78999999999999999999999999999999999999874 679999999999999999999
Q ss_pred ccccccCCCCCCccceEEEEeccCCccceeEEEEEechhHHHHHHHHHHHhhcccccccccccCCCCCCCCCCCcccccc
Q 002985 419 MKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLN 498 (861)
Q Consensus 419 ~kDyIa~PK~NGYqSLHt~V~~~~~~~~~~vEIQIRT~~Mh~~AE~G~aahw~YK~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (861)
|||||++||+||||||||+|.++. + ++||||||..||.|||+||++||+||++.+ .. ..
T Consensus 296 ~kDyIa~PK~nGYqSlH~~v~~p~---~-~vEIQIRT~~mh~~Ae~g~aah~~YK~~~~-----------~~------~~ 354 (393)
T 1vj7_A 296 FKDYIAAPKANGYQSIHTTVYGPK---G-PIEIQIRTKEMHQVAEYGVAAHWAYKKGVR-----------GK------VN 354 (393)
T ss_dssp CEETTTSCCTTCCCCEEEEEECSS---S-EEEEEEEEHHHHHHHHHTTCC------------------------------
T ss_pred ccccccCCCcCCcceeEEEEEeCC---c-eEEEEEecHHHHHHHHhhHHHHhccccCCC-----------cc------cc
Confidence 999999999999999999998643 5 999999999999999999999999998421 00 00
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcCCCchhhh
Q 002985 499 NANIALRISWLNAIREWQEEFVGNMTSREFV 529 (861)
Q Consensus 499 ~~~~~~~~~wl~~l~e~~~~~~~~~~~~ef~ 529 (861)
....+++++||++|+|||++. .++.||+
T Consensus 355 ~~~~~~~~~wl~~ll~~~~~~---~~~~ef~ 382 (393)
T 1vj7_A 355 QAEQKVGMNWIKELVELQDAS---NGDAVDF 382 (393)
T ss_dssp --------CHHHHHHHC--------------
T ss_pred hhhhHHHHHHHHHHHHHHhcC---CCcHHHH
Confidence 112335689999999999985 3577876
No 2
>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8
Probab=100.00 E-value=3.7e-37 Score=321.23 Aligned_cols=162 Identities=19% Similarity=0.216 Sum_probs=129.7
Q ss_pred eEEEEeecChhHHHHHHHhcCCCcc----cccceeeEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccccCCCcccccc
Q 002985 347 TEIRSVCKEPYSIYKAVLKSRGSIN----EVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDY 422 (861)
Q Consensus 347 ~~V~~R~K~~ySI~~Km~rk~~~~~----ei~Dl~giRIIv~~~~~~~~~~~~~~~~dCY~vlg~vh~~~~pip~~~kDy 422 (861)
..|+||+|++||||+||.|++.+++ +|+|++|+|||++. .+|||.++++||+.|.|.|.++|||
T Consensus 43 ~~v~~RvK~~~Si~~K~~rk~~~~~~~~~~i~Di~GiRIi~~~------------~~d~y~v~~~i~~~~~~~~~~~kDy 110 (226)
T 2be3_A 43 EFVTGRVKPIESIKEKMARRGITYATLEHDLQDIAGLRVMVQF------------VDDVKEVVDILHKRQDMRIIQERDY 110 (226)
T ss_dssp EEEEEEECCHHHHHHHHHHHTCCTTTHHHHCTTSEEEEEEESC------------GGGHHHHHHHHHTCSSEEEEEEEET
T ss_pred ceEEeeCCCHHHHHHHHHhhCCCcccchhhccccceEEEEEcC------------HHHHHHHHHHHHhccCCceeeecch
Confidence 4799999999999999999999998 99999999999774 5799999999999999999999999
Q ss_pred ccCCCCCCccceEEEEe-cc---CCccceeEEEEEechhHHHHHHHHHHHhhcccccccccccCCCCCCCCCCCcc-ccc
Q 002985 423 IATPKPNGYQSLHTTLI-PF---LYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKT-VCL 497 (861)
Q Consensus 423 Ia~PK~NGYqSLHt~V~-~~---~~~~~~~vEIQIRT~~Mh~~AE~G~aahw~YK~~~~~~~~~~~~~~~~~~~~~-~~~ 497 (861)
|++||+||||||||+|. |. .++.+.++||||||..||.|||+||++||+|++.. + ... ..+
T Consensus 111 I~~PK~nGYrSlH~~v~~p~~~~~g~~~~~vEIQIRT~~m~~wAe~eh~~~YK~~~~~-------------~-~~~~~~l 176 (226)
T 2be3_A 111 ITHRKASGYRSYHVVVEYTVDTINGAKTILAEIQIRTLAMNFWATIEHSLNYKYQGDF-------------P-DEIKKRL 176 (226)
T ss_dssp TTTCCTTSCCCEEEEEEEEECCTTCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHTTCC-------------C-HHHHHHH
T ss_pred hhcCCCCCceEEEEEEEcccccccCCCCcEEEEEEeeHHHHHHHHHhHHHHcCCcCCC-------------c-HHHHHHH
Confidence 99999999999999994 32 23457899999999999999999999999999731 0 000 000
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhcCCCchhhhhhhcccccC
Q 002985 498 NNANIALRISWLNAIREWQEEFVGNMTSREFVDTITRDLLG 538 (861)
Q Consensus 498 ~~~~~~~~~~wl~~l~e~~~~~~~~~~~~ef~~~~k~dl~~ 538 (861)
.. ..+....|.+++++|+++.. ++.+|++.++.+|+.
T Consensus 177 ~~-~a~~~~~~d~~m~~i~~~i~---~~~~~~~~~~~~~~~ 213 (226)
T 2be3_A 177 EI-TARIAHQLDEEMGEIRDDIQ---EAQALFDPLSRKLND 213 (226)
T ss_dssp HH-HHHHHHHHHHHHHTTHHHHH---HHHHHCCC-------
T ss_pred HH-HHHHHHHHHHHHHHHHHHHh---hhHHHHHHhhHHHhh
Confidence 00 01224689999999999874 588999999999885
No 3
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans}
Probab=100.00 E-value=2.5e-35 Score=311.01 Aligned_cols=166 Identities=22% Similarity=0.232 Sum_probs=125.9
Q ss_pred EeeehhhhcccccCCCCcccccccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccceeE
Q 002985 269 VKLADRLHNMRTLSHMPPHKQSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTVKTE 348 (861)
Q Consensus 269 IKLADRLhNMRtL~~~~~~kq~ELEdL~f~~l~p~~y~~i~~~l~~~~~~~~~~i~~~~~~L~~~L~~~~~l~~~~i~~~ 348 (861)
--||+||- |..+. .|+|++.+.|. ..+.+++.+|+.++.+. ....... ++ ..
T Consensus 22 apla~~lg-~~~~~-------~~~~~~~~~Y~--~a~~el~~kl~~l~~e~-----------~~~~~~~------~i-~~ 73 (255)
T 3l9d_A 22 ASMTGGQQ-MGRGS-------MNWEEFLDPYI--QAVGELKIKFRGIRKQF-----------RKQKRHS------PI-EF 73 (255)
T ss_dssp ---------------------CCHHHHTHHHH--HHHHHHHHHHHHHHHHH-----------HHTTSCC------SC-CE
T ss_pred HhhhhHhh-HHHHH-------HHHHHHHHHHH--HHHHHHHHHHHHHHHHH-----------HHhhccC------Cc-ce
Confidence 44777774 44332 68899776654 57777777766543322 1222111 23 37
Q ss_pred EEEeecChhHHHHHHHhcCCCcc----cccceeeEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccccCCCcccccccc
Q 002985 349 IRSVCKEPYSIYKAVLKSRGSIN----EVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIA 424 (861)
Q Consensus 349 V~~R~K~~ySI~~Km~rk~~~~~----ei~Dl~giRIIv~~~~~~~~~~~~~~~~dCY~vlg~vh~~~~pip~~~kDyIa 424 (861)
|+||+|++||||+||.|++.+++ +|+|++|+|||+.. .+|||.|+++||+.|.|.|.++||||+
T Consensus 74 V~~RvKs~~SI~~Km~Rk~~~~~~~~~~I~Di~GiRII~~~------------~~D~y~v~~~I~~~~~~~~~~~KDYIa 141 (255)
T 3l9d_A 74 VTGRVKPIESIKEKMVLRGIKKENLTQDMQDIAGLRIMVQF------------VDDVNDVLELLRQRKDMKVIQERDYIN 141 (255)
T ss_dssp EEEEECCHHHHHHHHHHHTCCGGGHHHHCSCSEEEEEEESS------------TTHHHHHHHHHHTCSSSEEEEEEEESC
T ss_pred EEeEEcCHHHHHHHHHhcCCCccchhhhccccceEEEEEeC------------HHHHHHHHHHHHhcCCCceeeeecccc
Confidence 99999999999999999999987 79999999999775 469999999999999999999999999
Q ss_pred CCCCCCccceEEEEe-cc---CCccceeEEEEEechhHHHHHHHHHHHhhcccc
Q 002985 425 TPKPNGYQSLHTTLI-PF---LYESMFRLEVQIRTEEMDLIAERGIAAHYSGRV 474 (861)
Q Consensus 425 ~PK~NGYqSLHt~V~-~~---~~~~~~~vEIQIRT~~Mh~~AE~G~aahw~YK~ 474 (861)
+||+|||||||++|. |. .++.+.++||||||..||.|||+||++||+|++
T Consensus 142 ~PK~nGYrSlH~iv~~p~~~~~g~~~~~vEIQIRT~~Mh~WAeieH~~~YK~~~ 195 (255)
T 3l9d_A 142 NLKPSGYRSYHVIVEYPVDTISGQRIIMAEIQIRTLAMNFWATIEHSLNYKYHG 195 (255)
T ss_dssp C-CCCSCCEEEEEEEEEEEETTEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCceeEEEEEEcccccccCCCceEEEEEECCHHHHHHHHHHHHHhcCCCC
Confidence 999999999999995 31 234568999999999999999999999999996
No 4
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=99.97 E-value=3.6e-33 Score=281.69 Aligned_cols=132 Identities=31% Similarity=0.451 Sum_probs=118.2
Q ss_pred hhhHHHHHHHHHHHHHhhcCCCcc--cCCCccchHHHHHHHHH-HcCC-CHHHHHHHhhccccccCCCCCHHHHHHHhCH
Q 002985 143 PNELELVRRALMLAFEAHDGQKRR--SGEPFIIHPVEVARILG-ELEL-DWESIAAGLLHDTVEDTNVVTFERIEEEFGA 218 (861)
Q Consensus 143 ~~~~~~l~~A~~~A~~aH~gQ~Rk--sGePYi~Hpl~VA~ILa-~l~l-D~~ti~AALLHDvvEDt~~~t~e~I~~~FG~ 218 (861)
..|.+.+.+|+.||.++|.||+|+ +|+|||.||++||.||+ ++|+ |.++++||||||++|||+ +|.++|++.||+
T Consensus 3 ~~d~~~l~~A~~~A~~~H~gQ~rk~~~G~pyi~Hpl~VA~ila~~l~~~D~~~i~AAlLHDvvEDt~-~t~e~i~~~FG~ 81 (179)
T 3nqw_A 3 TYPSAKFMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDVVEDTD-ASFEDVEKLFGP 81 (179)
T ss_dssp CCCCHHHHHHHHHHHHHSTTCBCSSSSCCBTHHHHHHHHHHHHTTTCCCCHHHHHHHHTTTHHHHSS-CCHHHHHHHHCH
T ss_pred cccHHHHHHHHHHHHHHhccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHHhcCC-CCHHHHHHHHCH
Confidence 446788999999999999999998 59999999999999999 8998 999999999999999998 899999999999
Q ss_pred HHHHHHHhhcccccccccccccCCcchhhhhHHHHHHHHHhcccCceEEEEeeehhhhcccccCCCCccc
Q 002985 219 TVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHK 288 (861)
Q Consensus 219 ~Va~LV~gvTkv~~l~~~~~~~~~~~~~~~qae~lRkmLLAm~~DiRVvLIKLADRLhNMRtL~~~~~~k 288 (861)
+|+.||+||||+.+++.. .....|.+++|+ .|+||++||||||+||||++..++|++
T Consensus 82 ~Va~lV~gvtk~~~~~~~-------~~~~~q~e~~r~------~d~rvvlIKLADRl~NmR~l~~~~~~~ 138 (179)
T 3nqw_A 82 DVCGLVREVTDDKSLEKQ-------ERKRLQIENAAK------SSCRAKLIKLADKLDNLRDLQVNTPTG 138 (179)
T ss_dssp HHHHHHHHTCCCTTSCHH-------HHHHHHHHSSTT------SCHHHHHHHHHHHHHHHHHHHHSCCTT
T ss_pred HHHHHHHHHHhccccCHH-------HHHHHHHHHHHh------CCHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 999999999998776421 123457777775 799999999999999999999998765
No 5
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}
Probab=99.97 E-value=1.7e-32 Score=276.53 Aligned_cols=135 Identities=39% Similarity=0.545 Sum_probs=117.4
Q ss_pred hhHHHHHHHHHHHHHhhcCCCccc--CCCccchHHHHHHHH-HHcCC-CHHHHHHHhhccccccCCCCCHHHHHHHhCHH
Q 002985 144 NELELVRRALMLAFEAHDGQKRRS--GEPFIIHPVEVARIL-GELEL-DWESIAAGLLHDTVEDTNVVTFERIEEEFGAT 219 (861)
Q Consensus 144 ~~~~~l~~A~~~A~~aH~gQ~Rks--GePYi~Hpl~VA~IL-a~l~l-D~~ti~AALLHDvvEDt~~~t~e~I~~~FG~~ 219 (861)
.|.+++.+|+.||.++|.||+|++ |+|||.||++||.|| .++|+ |.++++||||||++|||+ +|.++|++.||++
T Consensus 2 ~d~~~l~~A~~~A~~aH~gQ~rk~~~G~PYi~Hpl~VA~il~~~~~~~d~~~i~AALLHDvvEDt~-~t~e~i~~~FG~~ 80 (178)
T 3nr1_A 2 SEAAQLLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVEDTD-TTLDEVELHFGAQ 80 (178)
T ss_dssp CHHHHHHHHHHHHHHHTTTCBCSSTTCCBTTHHHHHHHHHHHHTSCCCCHHHHHHHHHTTHHHHSS-CCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHcccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHHhcCC-CCHHHHHHHHCHH
Confidence 367889999999999999999987 999999999999999 58996 999999999999999998 8999999999999
Q ss_pred HHHHHHhhcccccccccccccCCcchhhhhHHHHHHHHHhcccCceEEEEeeehhhhcccccCCCCcccccccc
Q 002985 220 VRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSELE 293 (861)
Q Consensus 220 Va~LV~gvTkv~~l~~~~~~~~~~~~~~~qae~lRkmLLAm~~DiRVvLIKLADRLhNMRtL~~~~~~kq~ELE 293 (861)
|+.||+||||+..+... .....|.+++| ..|+||++||||||+||||+|..++|+. |.+|
T Consensus 81 Va~lV~gvTk~~~~~~~-------~~~~~q~e~~~------~~d~rvvlIKLADRl~NmR~l~~~~~~~-~~~~ 140 (178)
T 3nr1_A 81 VRRLVEEVTDDKTLPKL-------ERKRLQVEQAP------HSSPGAKLVKLADKLYNLRDLNRCTPEG-WSEH 140 (178)
T ss_dssp HHHHHHHTCCCTTSCHH-------HHHHHHHHHGG------GSCHHHHHHHHHHHHHHHHHHHHCCCTT-CCHH
T ss_pred HHHHHHHHHhccccchh-------hHHHHHHHHHH------hCCchhHHHHHHHHHHHHHHhhhCCccc-cCHH
Confidence 99999999998765421 12234566654 6899999999999999999999988765 4433
No 6
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=99.86 E-value=1.6e-22 Score=177.30 Aligned_cols=70 Identities=43% Similarity=0.842 Sum_probs=63.6
Q ss_pred cccCCceeeecCCCceEecCCCCcHHHHHHhhccccccceEEEEECCEecCCCccCCCCCeEEEEecCCC
Q 002985 535 DLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNAL 604 (861)
Q Consensus 535 dl~~~~I~VftP~G~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~l~~~L~~gd~VeIit~~~~ 604 (861)
|||+++||||||+|++++||+|+||+||||+||+++|++|++|+|||++|+|+++|++||+|||+|+++.
T Consensus 2 ~l~~~~i~v~tP~G~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkVNG~~v~L~~~L~~gd~VeIit~~~~ 71 (78)
T 3hvz_A 2 DLAPEEVFVFTPKGDVISLPIGSTVIDFAYAIHSAVGNRMIGAKVDGRIVPIDYKVKTGEIIDVLTTKEL 71 (78)
T ss_dssp ----CEEEEECTTSCEEEEETTCBHHHHHHHHCHHHHHTEEEEEETTEEECTTCBCCTTCBEEEEECC--
T ss_pred CCcCceEEEECCCCCEEEecCCCCHHHHHHHhhhhhhcceEEEEECCEEcCCCcccCCCCEEEEEccCcc
Confidence 7899999999999999999999999999999999999999999999999999999999999999998764
No 7
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=99.46 E-value=7.4e-14 Score=125.28 Aligned_cols=65 Identities=28% Similarity=0.414 Sum_probs=60.2
Q ss_pred Cceeeec-CCCc------eEec-CCCCcHHHHHHhhccccccceEEEEE-------CCEecCCCccCCCCCeEEEEecCC
Q 002985 539 SRVFVFT-PRGE------IKNL-PKGATVVDYAYMIHTEIGNKMVAAKV-------NGNLVSPTHVLANAEVVEIITYNA 603 (861)
Q Consensus 539 ~~I~Vft-P~G~------i~~l-p~gaT~lDfAy~iht~ig~~~~~akV-------ng~~v~l~~~L~~gd~VeIit~~~ 603 (861)
+-|+||| |+|+ ++.| |+|+|+.||||+||+++|+.+..|.| ||+.|+++++|++||+|+|++.++
T Consensus 10 ~lIrVYtk~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~di~~~fkyA~VwG~saK~~~qrVgldh~L~d~DVV~Iv~~~~ 89 (93)
T 2eki_A 10 KLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVKKSG 89 (93)
T ss_dssp CEEEEEECCTTSCCCSSSCEEEETTSCCHHHHHHHHCTTCTTTEEEEEEBSTTSSSSSEEECSSCCCCSSEEECEEECCS
T ss_pred CeEEEEeCCCCCCCCCCCCEEEecCCCCHHHHHHHHHHHHHhhccEEEEecccccCCCEECCCCcEecCCCEEEEEeCCC
Confidence 5799999 8886 4889 99999999999999999999999887 999999999999999999999764
No 8
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=99.31 E-value=3.9e-12 Score=109.00 Aligned_cols=65 Identities=46% Similarity=0.843 Sum_probs=62.0
Q ss_pred ceeeecCCCceEecCCCCcHHHHHHhhccccccceEEEEECCEecCCCccCCCCCeEEEEecCCC
Q 002985 540 RVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNAL 604 (861)
Q Consensus 540 ~I~VftP~G~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~l~~~L~~gd~VeIit~~~~ 604 (861)
+|+|+.|+|+.+++|+|+|+.|||+.+|++++..+++|+|||++++|+++|++||.|||+|...+
T Consensus 2 ~i~i~~p~g~~~~~~~g~T~~dla~~i~~~l~~~~vaa~vNg~lvdl~~~L~~~~~Veivt~~~~ 66 (73)
T 2kmm_A 2 EVMVFTPKGEIKRLPQGATALDFAYSLHSDLGDHCIGAKVNHKLVPLSYVLNSGDQVEVLSSKSL 66 (73)
T ss_dssp CEEEECTTCCEEEECTTCBHHHHHHHHCSHHHHTEEEEEETTEECCTTCBCCSSSBEEEEECCCC
T ss_pred eEEEEcCCCCEEEcCCCCcHHHHHHHHhhccccceEEEEECCEEeCCCcCcCCCCEEEEEECCCC
Confidence 47899999999999999999999999999999999999999999999999999999999998754
No 9
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=99.16 E-value=1.8e-11 Score=109.09 Aligned_cols=66 Identities=20% Similarity=0.218 Sum_probs=62.6
Q ss_pred CceeeecCCCceEecCC-CCcHHHHHHhhccccccceEEEEECCEecCCCccCCCCCeEEEEecCCC
Q 002985 539 SRVFVFTPRGEIKNLPK-GATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNAL 604 (861)
Q Consensus 539 ~~I~VftP~G~i~~lp~-gaT~lDfAy~iht~ig~~~~~akVng~~v~l~~~L~~gd~VeIit~~~~ 604 (861)
.+|.|..|+|+++++|+ |+|+.|||+.||+.+++.+++|+|||++++|+++|++|+.|||+|.+..
T Consensus 10 ~~i~I~lpdG~~~~~~~~~~T~~dia~~i~~~l~~~~vaakvNg~l~dL~~~l~~d~~ve~vt~~~~ 76 (88)
T 1wwt_A 10 KPIKVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNNVVWDLDRPLEEDCTLELLKFEDE 76 (88)
T ss_dssp CEEEEECTTSCEEEEETTTCCHHHHHHHSSTTTGGGCCCEEESSSEECSSSCCCSSEEEEECSSCCS
T ss_pred CCEEEEECCCCEEEcccCCCCHHHHHHHhhhccccceEEEEECCEEECCCcCcCCCCEEEEEeCCCH
Confidence 46889999999999998 9999999999999999999999999999999999999999999998754
No 10
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.94 E-value=2.6e-10 Score=128.13 Aligned_cols=64 Identities=23% Similarity=0.360 Sum_probs=60.9
Q ss_pred Cceeeec---------CCC----ceEecCCCCcHHHHHHhhccccccceEEE--EECCEecCCCccCCCCCeEEEEecC
Q 002985 539 SRVFVFT---------PRG----EIKNLPKGATVVDYAYMIHTEIGNKMVAA--KVNGNLVSPTHVLANAEVVEIITYN 602 (861)
Q Consensus 539 ~~I~Vft---------P~G----~i~~lp~gaT~lDfAy~iht~ig~~~~~a--kVng~~v~l~~~L~~gd~VeIit~~ 602 (861)
+-|+||| |+| +.+.||+|+||.||||.||+++|+.|++| ++||+.++++|+|++||+|+|+|++
T Consensus 318 ~li~vft~~~~~~~~~~~g~~~~~~~~l~~G~t~~d~a~~iH~d~~~~f~~a~~~~~~~~~g~~~~l~dgDvv~i~~~~ 396 (397)
T 1wxq_A 318 KLIPVYPVHDENKLTDQFGNVLPHVFLMKKGSTPRDLAFKVHTDLGKGFLYAINARTKRRVGEDYELQFNDIVKIVSVT 396 (397)
T ss_dssp CEEEEEEESCC-----CCSCSSCCCEEEETTCCHHHHHHHHCHHHHHTEEEEEETTTCSBCCTTCCCCTTEEEEEEEC-
T ss_pred CCeEEEeecccccccCCcCcccceeEEeCCCCCHHHHHHHHhHHHHhhhhhhHHhcCCEEcCCCccccCCCEEEEEeCC
Confidence 5899999 999 99999999999999999999999999999 8899999999999999999999964
No 11
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=98.93 E-value=6.2e-10 Score=115.66 Aligned_cols=62 Identities=24% Similarity=0.392 Sum_probs=60.1
Q ss_pred eeeecCCCceEecCCCCcHHHHHHhhccccccceEEEEECCEecCCCccCCCCCeEEEEecC
Q 002985 541 VFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYN 602 (861)
Q Consensus 541 I~VftP~G~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~l~~~L~~gd~VeIit~~ 602 (861)
|.|.+|+|+++++|+|+|+.|||+.||+.+++.+++|+|||++++|+++|++|+.|||+|.+
T Consensus 2 i~I~~p~G~~~~~~~g~T~~dia~~i~~~l~~~~vaakvNg~l~dL~~~l~~~~~ve~it~~ 63 (224)
T 1tke_A 2 PVITLPDGSQRHYDHAVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSIITAK 63 (224)
T ss_dssp CEEECTTSCEEECSSCBCHHHHHHHHCHHHHHHCCEEEETTEEEETTCCBCSCEEEEEECTT
T ss_pred eEEEeCCCCEEEecCCCCHHHHHHHHhhhcccceEEEEECCEEeccceEcCCCCeEEEEecC
Confidence 67899999999999999999999999999999999999999999999999999999999975
No 12
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=98.89 E-value=1e-08 Score=89.77 Aligned_cols=74 Identities=15% Similarity=0.174 Sum_probs=67.0
Q ss_pred eeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeeecc
Q 002985 771 SIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWSTG 846 (861)
Q Consensus 771 ~~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~Vs~g 846 (861)
+...|+|.+.||+|+|++|+++|++.|+||.+++.... ++ .+.+.|+++ .+.+++..++++|++++||.+|.+-
T Consensus 4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~-~~-~~~~~i~v~~~~~~~l~~l~~~L~~~~~V~~v~~~ 78 (88)
T 2ko1_A 4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAK-DG-IFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERL 78 (88)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEEC-SS-EEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEEE
T ss_pred EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEc-CC-EEEEEEEEEECCHHHHHHHHHHHhcCCCceEEEEe
Confidence 45689999999999999999999999999999998754 33 788999999 8999999999999999999999765
No 13
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=98.66 E-value=3.2e-08 Score=101.56 Aligned_cols=72 Identities=17% Similarity=0.236 Sum_probs=59.8
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEec-C--CcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeeecc
Q 002985 772 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDR-G--RGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWSTG 846 (861)
Q Consensus 772 ~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~-~--~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~Vs~g 846 (861)
.+.|.|.+.||+|+|+||+++|++.++||.+++..... + ++.|.|. || .+. +|.++|++|++++||++|.+-
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~--IEV~d~-~Le~LL~kLrkI~gV~~V~Rv 79 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIY--FEIEGG-DFEKILERVKTFDYIIEIEEE 79 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEE--EEECSS-CHHHHHHHHHTCTTEEEEEEE
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEE--EEECCC-CHHHHHHHHhCCCCeeEEEEE
Confidence 56799999999999999999999999999999998653 1 3678888 66 577 999999999999999999875
No 14
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=98.59 E-value=1.7e-07 Score=93.10 Aligned_cols=73 Identities=18% Similarity=0.170 Sum_probs=67.0
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeeecc
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWSTG 846 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~gV~~Vs~g 846 (861)
.|.|.+.||+|+|++|+.+|++.|+||.++++....+.+.+.|+|+++++.++|++++++|+++.+|++|.+-
T Consensus 5 ~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d~~~leqI~kqL~Kl~dV~~V~r~ 77 (164)
T 2f1f_A 5 ILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSEL 77 (164)
T ss_dssp EEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEG
T ss_pred EEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEeccHHHHHHHHHHHcCCCCEEEEEEc
Confidence 5889999999999999999999999999999875544578999999998899999999999999999999864
No 15
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=98.42 E-value=6.5e-07 Score=88.98 Aligned_cols=73 Identities=14% Similarity=0.147 Sum_probs=66.8
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeeecc
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWSTG 846 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~gV~~Vs~g 846 (861)
.|.|.+.|++|+|++|+.++++.|+||.++++....+.+.+.|+|.++++.++|++++++|.++.+|++|.+-
T Consensus 6 ~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d~~~leql~kQL~Kl~dV~~V~~~ 78 (165)
T 2pc6_A 6 IISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDL 78 (165)
T ss_dssp EEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEG
T ss_pred EEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEeccHHHHHHHHHHhcCCCCEEEEEEc
Confidence 5899999999999999999999999999999875555688999999998899999999999999999999863
No 16
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=98.39 E-value=4.2e-07 Score=80.36 Aligned_cols=71 Identities=18% Similarity=0.194 Sum_probs=61.2
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeee
Q 002985 772 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWS 844 (861)
Q Consensus 772 ~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~Vs 844 (861)
.+.|.|.+.||+|+|++||++|++.|+||.+++..... +.+.|.++++ .+.+++..++++|+++...+++.
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~--~~~~~~i~v~~~~~~~l~~l~~~L~~~~~~~~~~ 76 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLD--EYFTMMAVVSSDEKQDFTYLRNEFEAFGQTLNVK 76 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEET--TEEEEEEEEEESSCCCHHHHHHHHHHHHHHHTEE
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEc--CEEEEEEEEEeCCCCCHHHHHHHHHHHHHHcCCE
Confidence 45799999999999999999999999999999887653 6889999999 77789999999999887654443
No 17
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=98.09 E-value=6.9e-06 Score=80.32 Aligned_cols=68 Identities=21% Similarity=0.287 Sum_probs=61.3
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeeecc
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWSTG 846 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~Vs~g 846 (861)
.|+|++.||+|+|+||+++|++.++||.++++.+. +. +.+.++ .+.+++..++.+++++.+|+++.+-
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~---g~--i~~~~~~~~~~~~~~L~~~l~~i~~~~~~~~~ 70 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI---GR--IYLNFAELEFESFSSLMAEIRRIAGVTDVRTV 70 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT---TE--EEEEECCCCHHHHHHHHHHHHHSTTEEEEEEE
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC---CE--EEEEEEeCCHHHHHHHHHHHHcCCCeeEEEEe
Confidence 58999999999999999999999999999998632 33 778888 8999999999999999999998764
No 18
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=97.76 E-value=0.0001 Score=74.71 Aligned_cols=84 Identities=14% Similarity=0.217 Sum_probs=65.1
Q ss_pred cccCCCCCc-eeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccccCe
Q 002985 762 ATWHNLEGH-SIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGV 840 (861)
Q Consensus 762 V~W~~~~~~-~~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~gV 840 (861)
+.|+..... -.-.|.|.+.|++|+|+.|+.++++.|+||.++.+....+.+...|+|.+..+-..++++..+|.++-+|
T Consensus 18 ~~~~~m~~~~m~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e~~ieqL~kQL~KLidV 97 (193)
T 2fgc_A 18 YFQGHMTDQIREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLVEV 97 (193)
T ss_dssp ---------CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTE
T ss_pred hhhccCCccceEEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCHHHHHHHHHHhcCcCce
Confidence 678743332 1236899999999999999999999999999998865445578999999996678899999999999999
Q ss_pred eeeec
Q 002985 841 LGWST 845 (861)
Q Consensus 841 ~~Vs~ 845 (861)
+.|..
T Consensus 98 ikV~d 102 (193)
T 2fgc_A 98 VKVTP 102 (193)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99874
No 19
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=97.32 E-value=0.0001 Score=87.64 Aligned_cols=62 Identities=24% Similarity=0.392 Sum_probs=59.2
Q ss_pred eeeecCCCceEecCCCCcHHHHHHhhccccccceEEEEECCEecCCCccCCCCCeEEEEecC
Q 002985 541 VFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYN 602 (861)
Q Consensus 541 I~VftP~G~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~l~~~L~~gd~VeIit~~ 602 (861)
|.|..|||.+++++.|.||.|+|..|.+.+++.+++|+|||++++|+++|+.+..|+++|.+
T Consensus 2 ~~~~~~d~~~~~~~~~~t~~~~a~~i~~~~~~~~~~~~vng~~~dl~~~l~~d~~~~~~~~~ 63 (642)
T 1qf6_A 2 PVITLPDGSQRHYDHAVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSIITAK 63 (642)
T ss_dssp CEEECTTSCEEECSSCBCHHHHHHHHCHHHHHHCSEEEETTEEEETTSCBCSCEECCEECTT
T ss_pred ceEEcCCCCeEEecCCCCHHHHHHHhchhhhhheEEEEECCEEeccccccCCCceEEEeecC
Confidence 56788999999999999999999999999999999999999999999999999999999975
No 20
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=97.22 E-value=0.00013 Score=86.67 Aligned_cols=63 Identities=35% Similarity=0.439 Sum_probs=59.4
Q ss_pred ceeeecCCCceEecCCCCcHHHHHHhhccccccceEEEEECCEecCCCccCCCCCeEEEEecC
Q 002985 540 RVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYN 602 (861)
Q Consensus 540 ~I~VftP~G~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~l~~~L~~gd~VeIit~~ 602 (861)
+|.|..|||+++++|.|.|+.|+|-.|...+++.+++|+|||++++|+++|+.+..|+++|..
T Consensus 3 ~~~i~~~dg~~~~~~~g~t~~~ia~~~~~~~~~~~v~~~vng~~~dl~~~l~~d~~v~~~~~~ 65 (645)
T 1nyr_A 3 QINIQFPDGNKKAFDKGTTTEDIAQSISPGLRKKAVAGKFNGQLVDLTKPLETDGSIEIVTPG 65 (645)
T ss_dssp -CBBCCTTSCCCBCCTTCCHHHHHHTTCHHHHHHCCEEEETTEEECTTSCCCSCBCCCEECTT
T ss_pred ceEEEeCCCCEEEecCCCCHHHHHHHhhhhcccCeEEEEECCEEEeCCcccCCCCeEEEeecc
Confidence 567888999999999999999999999999999999999999999999999999999999975
No 21
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.00063 Score=75.91 Aligned_cols=62 Identities=29% Similarity=0.531 Sum_probs=50.9
Q ss_pred Cceeeec-CCCceEe------cCCC-CcHHHHHHhhccccccceEEEEE-------CCEecCCCccCCCCCeEEEEe
Q 002985 539 SRVFVFT-PRGEIKN------LPKG-ATVVDYAYMIHTEIGNKMVAAKV-------NGNLVSPTHVLANAEVVEIIT 600 (861)
Q Consensus 539 ~~I~Vft-P~G~i~~------lp~g-aT~lDfAy~iht~ig~~~~~akV-------ng~~v~l~~~L~~gd~VeIit 600 (861)
+-|.+|| +.|++.. +++| ||+.|||..||+++......|.| .|+.+..+|.|++||+|+|++
T Consensus 299 ~Li~~fT~g~~E~rawt~~~~~~a~~at~~D~a~~ih~d~~~~F~~a~v~Gs~~K~~~r~eGkdyvv~DGDVi~iv~ 375 (376)
T 4a9a_A 299 NLVRIYTKPKGQIPDFTDPVVLRSDRCSVKDFCNQIHKSLVDDFRNALVYGSSVKHQPQYVGLSHILEDEDVVTILK 375 (376)
T ss_dssp CCEEEEECCSSSCCCSSSCEEEBTTBCBHHHHHHHHCGGGGGGEEEEEEESTTSSSSSEEECTTCBCCTTCEEEEEE
T ss_pred CCcEEEeCCCCCcCCCCccccccCCCCcHHHHHHHHHHHHHHhhhHhhhcCcccCCCCCccCCCcEEcCCCEEEEEe
Confidence 4677887 3455443 3455 89999999999999999998876 568899999999999999987
No 22
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=96.76 E-value=0.0008 Score=58.09 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=45.1
Q ss_pred eeeecCCCceEecCCCCcHHHHHHhhccccccceEEEEECCEecCCCccCCCCCeEEEEecC
Q 002985 541 VFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYN 602 (861)
Q Consensus 541 I~VftP~G~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~l~~~L~~gd~VeIit~~ 602 (861)
|.+|+-+...+++|+|+|+.|+.-.+.-... -+.+.+||+.+|.++.++ ||.|||++.-
T Consensus 5 Vkl~g~~~~~~ev~~g~Tv~dLL~~Lgl~~~--~VvV~vNG~~v~~d~~l~-GD~VeIv~~V 63 (74)
T 2l32_A 5 VEVVGEETSEVAVDDDGTYADLVRAVDLSPH--EVTVLVDGRPVPEDQSVE-VDRVKVLRLI 63 (74)
T ss_dssp EECSSSSEEEEECSTTCSHHHHHHTTCCCSS--CCCEECCCCCCCTTSSSC-CCCEEECSSC
T ss_pred EEEeCccceeEEcCCCCcHHHHHHHcCCCcc--eEEEEECCEECCHHHCCC-CCEEEEEEee
Confidence 3444333445899999999999877754332 236889999999999886 9999999864
No 23
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=96.74 E-value=0.0018 Score=54.27 Aligned_cols=53 Identities=13% Similarity=0.234 Sum_probs=45.1
Q ss_pred CCceEecCCCCcHHHHHHhhccccccceEEEEECCEecCC----CccCCCCCeEEEEec
Q 002985 547 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSP----THVLANAEVVEIITY 601 (861)
Q Consensus 547 ~G~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~l----~~~L~~gd~VeIit~ 601 (861)
+|+.+++|.|+|+.|+--.+.- ....+..-|||+.++. +++|++||.|+|++.
T Consensus 6 Ng~~~~~~~~~tv~~ll~~l~~--~~~~v~vavN~~~v~~~~~~~~~L~~gD~v~i~~~ 62 (66)
T 1f0z_A 6 NDQAMQCAAGQTVHELLEQLDQ--RQAGAALAINQQIVPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_dssp SSCEECCCTTCCHHHHHHHHTC--CCSSEEEEETTEEECHHHHTTCCCCTTEEECEEES
T ss_pred CCEEEEcCCCCcHHHHHHHcCC--CCCCEEEEECCEECCchhcCCcCCCCCCEEEEEee
Confidence 6889999999999999777643 3455678899999998 789999999999984
No 24
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=96.70 E-value=0.0023 Score=56.93 Aligned_cols=55 Identities=22% Similarity=0.326 Sum_probs=45.7
Q ss_pred cCCCceEecCCC-CcHHHHHHhhccccccceEEEEECCEecCC----CccCCCCCeEEEEec
Q 002985 545 TPRGEIKNLPKG-ATVVDYAYMIHTEIGNKMVAAKVNGNLVSP----THVLANAEVVEIITY 601 (861)
Q Consensus 545 tP~G~i~~lp~g-aT~lDfAy~iht~ig~~~~~akVng~~v~l----~~~L~~gd~VeIit~ 601 (861)
+=+|+.+++|.| +|+.|+--.+.- ....+++-|||+.||. +++|++||.|+|++.
T Consensus 24 ~vNGe~~el~~~~~Tv~dLL~~L~~--~~~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~~ 83 (87)
T 1tyg_B 24 QLNGKDVKWKKDTGTIQDLLASYQL--ENKIVIVERNKEIIGKERYHEVELCDRDVIEIVHF 83 (87)
T ss_dssp EETTEEECCSSSCCBHHHHHHHTTC--TTSCCEEEETTEEECGGGTTTSBCCSSSEEEEEEE
T ss_pred EECCEEEECCCCCCcHHHHHHHhCC--CCCCEEEEECCEECChhhcCCcCCCCCCEEEEEcc
Confidence 447899999998 999999877743 3445578899999998 578999999999984
No 25
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.68 E-value=0.0054 Score=61.95 Aligned_cols=63 Identities=29% Similarity=0.171 Sum_probs=47.1
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEec----CCcEEEEEEEEE-cCH--HHHHHHHHHh
Q 002985 772 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDR----GRGIAVMLFHVE-GNL--ESLVNACSSV 834 (861)
Q Consensus 772 ~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~----~~~~a~m~ftVE-~d~--~~L~~l~~~L 834 (861)
...|.|.+.||+|+++.||++|++.|+||..++..+.. ..+.+.|++.+. .+. ++|..-+..+
T Consensus 93 ~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~~~~~~l~~~l~~~ 162 (195)
T 2nyi_A 93 EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPFPLYQEVVTALSRV 162 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEGGGHHHHHHHHHHH
T ss_pred EEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCCCccHHHHHHHHHH
Confidence 45699999999999999999999999999999877654 345677777666 322 4444444433
No 26
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.66 E-value=0.0016 Score=73.06 Aligned_cols=64 Identities=19% Similarity=0.281 Sum_probs=55.3
Q ss_pred Cceeeec--CC-CceEecCCCCcHHHHHHhhccccccceEEEEE-----------------CC--EecCCCccCCCCCeE
Q 002985 539 SRVFVFT--PR-GEIKNLPKGATVVDYAYMIHTEIGNKMVAAKV-----------------NG--NLVSPTHVLANAEVV 596 (861)
Q Consensus 539 ~~I~Vft--P~-G~i~~lp~gaT~lDfAy~iht~ig~~~~~akV-----------------ng--~~v~l~~~L~~gd~V 596 (861)
+-|.+|| || =+.+.+++|+|+.|+|+.||+++.+..+.|.| .| +.+..+|++++||+|
T Consensus 304 ~li~~fT~g~~evrawti~~g~ta~~aAg~IH~D~~~gFi~Aev~~~~d~~~~g~~~~~k~~g~~r~~Gk~y~v~dgDii 383 (396)
T 2ohf_A 304 QLEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSENAVKAAGKYRQQGRNYIVEDGDII 383 (396)
T ss_dssp TEEEEEEESSSEEEEEEEETTCBHHHHHHTTCTHHHHHEEEEEEECHHHHHHHCSHHHHHHTTCCEEECTTCBCCTTCEE
T ss_pred CCEEEECCCCCcceeEEecCCCcHHHHHhhhHHHHHhcceEEEEccHHHHHHhCCHHHHHhcCcccccCCCceeeCCCEE
Confidence 4677888 44 27899999999999999999999999999886 23 899999999999999
Q ss_pred EEEecC
Q 002985 597 EIITYN 602 (861)
Q Consensus 597 eIit~~ 602 (861)
++-.+-
T Consensus 384 ~f~fn~ 389 (396)
T 2ohf_A 384 FFKFNT 389 (396)
T ss_dssp EEEEC-
T ss_pred EEEecC
Confidence 998854
No 27
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.66 E-value=0.0014 Score=72.96 Aligned_cols=62 Identities=18% Similarity=0.281 Sum_probs=54.1
Q ss_pred Cceeeec--CC-CceEecCCCCcHHHHHHhhccccccceEEEEE----------C-------C--EecCCCccCCCCCeE
Q 002985 539 SRVFVFT--PR-GEIKNLPKGATVVDYAYMIHTEIGNKMVAAKV----------N-------G--NLVSPTHVLANAEVV 596 (861)
Q Consensus 539 ~~I~Vft--P~-G~i~~lp~gaT~lDfAy~iht~ig~~~~~akV----------n-------g--~~v~l~~~L~~gd~V 596 (861)
+-|.+|| |+ -+.+.+++|+|+.|+|+.||+++.+..+.|.| . | ++...+|++++||+|
T Consensus 283 ~li~~ft~g~~e~~aw~i~~g~ta~~~a~~IH~d~~~~fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdi~ 362 (368)
T 2dby_A 283 DLLTFFTAGEKEVRAWTVRRGTKAPRAAGEIHSDMERGFIRAEVIPWDKLVEAGGWARAKERGWVRLEGKDYEVQDGDVI 362 (368)
T ss_dssp TEEEEEEESSSCEEEEEEETTCBHHHHHHHHCHHHHHSCCEEEEEEHHHHHHHTSHHHHHHTTCCEEECTTCBCCTTEEE
T ss_pred CCEEEECCCCCCcceEEecCCCcHHHHHHhhHHHHHhhCeEEEEccHHHHHHhCCHHHHHhcCCccccCCCceecCCCEE
Confidence 4688888 44 27999999999999999999999999999988 1 5 778999999999999
Q ss_pred EEEe
Q 002985 597 EIIT 600 (861)
Q Consensus 597 eIit 600 (861)
++-.
T Consensus 363 ~~~f 366 (368)
T 2dby_A 363 YVLF 366 (368)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9865
No 28
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=96.65 E-value=0.00092 Score=60.73 Aligned_cols=58 Identities=19% Similarity=0.099 Sum_probs=44.1
Q ss_pred eEecCCCCcHHHHHHhh-----ccccccceEEEEECCEecCCCccCCCCCeEEEEecCCCCCC
Q 002985 550 IKNLPKGATVVDYAYMI-----HTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSK 607 (861)
Q Consensus 550 i~~lp~gaT~lDfAy~i-----ht~ig~~~~~akVng~~v~l~~~L~~gd~VeIit~~~~~~k 607 (861)
.+++|.|+|+.|.--+. |+++.-.....-|||+.++++++|++||.|||+..--.-||
T Consensus 29 ~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~d~~L~dGDRVEIyrpl~~DPk 91 (97)
T 2hj1_A 29 SFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKLTDVLKEGDRIEIYRPLLADPK 91 (97)
T ss_dssp EEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCTTCBCCTTCEEEECCCCC----
T ss_pred EEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCCCccCCCCCEEEEEecccCCHH
Confidence 45899999999986554 55555545577899999999999999999999986544443
No 29
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.64 E-value=0.0013 Score=73.11 Aligned_cols=62 Identities=23% Similarity=0.287 Sum_probs=54.2
Q ss_pred Cceeeec--CC-CceEecCCCCcHHHHHHhhccccccceEEEEE----------C-------C--EecCCCccCCCCCeE
Q 002985 539 SRVFVFT--PR-GEIKNLPKGATVVDYAYMIHTEIGNKMVAAKV----------N-------G--NLVSPTHVLANAEVV 596 (861)
Q Consensus 539 ~~I~Vft--P~-G~i~~lp~gaT~lDfAy~iht~ig~~~~~akV----------n-------g--~~v~l~~~L~~gd~V 596 (861)
+-|.+|| |+ -+.+.+++|+|+.|+|+.||+++.+..+.|.| . | ++...+|.+++||+|
T Consensus 278 ~li~~ft~g~~e~raw~i~~G~ta~~aAg~IH~D~~~gFi~Aev~~~~d~~~~~~~~~~k~~g~~r~egk~y~v~dgDii 357 (363)
T 1jal_A 278 NLQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEKGFIRAEVIAYEDFIQFNGENGAKEAGKWRLEGKDYIVQDGDVM 357 (363)
T ss_dssp TEEEEEEECSSEEEEEEEETTCBHHHHHHTTCTTHHHHCCEEEEECHHHHHHTTSHHHHHHTTCCEEECTTCBCCTTCEE
T ss_pred CCEEEECCCCCCcceeEecCCCcHHHHHHhhHHHHHhccEEEEEcCHHHHHHhCCHHHHHhcCCeeccCCccEecCCCEE
Confidence 4788888 43 27999999999999999999999999999998 1 5 778999999999999
Q ss_pred EEEe
Q 002985 597 EIIT 600 (861)
Q Consensus 597 eIit 600 (861)
++-.
T Consensus 358 ~f~f 361 (363)
T 1jal_A 358 HFRF 361 (363)
T ss_dssp EEES
T ss_pred EEEe
Confidence 9865
No 30
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=96.60 E-value=0.00074 Score=58.45 Aligned_cols=56 Identities=21% Similarity=0.243 Sum_probs=46.9
Q ss_pred eecCCCceEecCCCCcHHHHHHhhccccccceEEEEECCEecCCCccCCCCCeEEEEe
Q 002985 543 VFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIIT 600 (861)
Q Consensus 543 VftP~G~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~l~~~L~~gd~VeIit 600 (861)
....+|+.+++|.|+|+.|+...+.-. ...+.+-|||+.++.+++|++||.|+|++
T Consensus 17 ~~~~n~~~~~~~~~~Tv~dLl~~L~~~--~~~v~VavNg~~v~~~~~L~dGD~V~i~p 72 (77)
T 1rws_A 17 IGRNIEKEIEWREGMKVRDILRAVGFN--TESAIAKVNGKVVLEDDEVKDGDFVEVIP 72 (77)
T ss_dssp TTCCCCCCCCCCSSCCHHHHHHTTTCS--SCSSCEEETTEEECSSSCCCSSCCCBCSC
T ss_pred hcccCCEEEECCCCCcHHHHHHHhCCC--CcCEEEEECCEECCCCCCcCCCCEEEEEc
Confidence 345678899999999999998877643 33447889999999999999999999986
No 31
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=96.55 E-value=0.0077 Score=67.74 Aligned_cols=70 Identities=14% Similarity=0.260 Sum_probs=59.3
Q ss_pred EEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeee
Q 002985 773 QWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWS 844 (861)
Q Consensus 773 a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~gV~~Vs 844 (861)
.+|.+.-.|+||+|+.|+++|+++++||.++...+ ..+.+.|.+.|+....-=..++++|++++||+.|.
T Consensus 332 ~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r--~g~~A~~vidvD~~~~~~~~~l~~l~~i~~v~~vr 401 (404)
T 1sc6_A 332 RRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT--SAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRAR 401 (404)
T ss_dssp EEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE--CSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEE
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC--CCCEEEEEEEcCCCCCCCHHHHHHHhcCCCeeEEE
Confidence 35888899999999999999999999999998875 34789999999944112258999999999999885
No 32
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.41 E-value=0.01 Score=59.51 Aligned_cols=65 Identities=15% Similarity=0.080 Sum_probs=48.3
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEec------CCcEEEEEEEEE-c---CHHHHHHHHHHhcc
Q 002985 772 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDR------GRGIAVMLFHVE-G---NLESLVNACSSVDL 836 (861)
Q Consensus 772 ~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~------~~~~a~m~ftVE-~---d~~~L~~l~~~L~~ 836 (861)
...|.|.+.||+|++++|+++|++.++||..+...+.. ..+.+.|.+.+. . +.++|..-+..+-.
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~l~~~~~ 167 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDALCT 167 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 35699999999999999999999999999999877653 345677777776 4 44555555544433
No 33
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=96.36 E-value=0.01 Score=64.01 Aligned_cols=64 Identities=11% Similarity=0.034 Sum_probs=50.8
Q ss_pred EEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-c------CHHHHHHHHHHhcc
Q 002985 773 QWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-G------NLESLVNACSSVDL 836 (861)
Q Consensus 773 a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~------d~~~L~~l~~~L~~ 836 (861)
..|.|.|.||+|+++.||+.|++.|+||..++...+...+.+.|++.++ . +.++|..-+..+-.
T Consensus 11 ~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~la~ 81 (292)
T 3lou_A 11 FVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEPIAE 81 (292)
T ss_dssp EEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHHHHH
Confidence 3599999999999999999999999999999877665567777877776 4 45666666655543
No 34
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=96.35 E-value=0.015 Score=62.90 Aligned_cols=64 Identities=23% Similarity=0.302 Sum_probs=51.7
Q ss_pred EEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-c----CHHHHHHHHHHhcc
Q 002985 773 QWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-G----NLESLVNACSSVDL 836 (861)
Q Consensus 773 a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~----d~~~L~~l~~~L~~ 836 (861)
..|.|.|.||+|+++.||+.|++.|+||..++...+...+.+.|++.++ . +.++|..-+..+..
T Consensus 23 ~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~~~~~~L~~~l~~la~ 91 (302)
T 3o1l_A 23 FRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDLDGFREAFTPIAE 91 (302)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSSSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 4599999999999999999999999999999877665567888888887 3 45677666665544
No 35
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=96.34 E-value=0.0046 Score=52.47 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=45.5
Q ss_pred eeeecCC-CceEecCCCCcHHHHHHhhccccccceEEEEECCEecCCCccCCCCCeEEEEec
Q 002985 541 VFVFTPR-GEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 601 (861)
Q Consensus 541 I~VftP~-G~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~l~~~L~~gd~VeIit~ 601 (861)
|+|-... .+.+++|.|.|+.|+--.+.-. ...+.+-|||+.++.+++|++||.|+|++.
T Consensus 7 i~vNg~~~~~~~~~~~~~tv~~Ll~~l~~~--~~~v~vavN~~~v~~~~~L~~gD~V~ii~~ 66 (70)
T 1ryj_A 7 FTVITDDGKKILESGAPRRIKDVLGELEIP--IETVVVKKNGQIVIDEEEIFDGDIIEVIRV 66 (70)
T ss_dssp EEEEETTEEEEEEESSCCBHHHHHHHTTCC--TTTEEEEETTEECCTTSBCCTTCEEEEEEC
T ss_pred EEEeCccCceeEECCCCCcHHHHHHHhCCC--CCCEEEEECCEECCCcccCCCCCEEEEEec
Confidence 4444332 2348999999999997776433 344568899999999999999999999973
No 36
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.32 E-value=0.011 Score=59.32 Aligned_cols=62 Identities=18% Similarity=0.257 Sum_probs=46.5
Q ss_pred EEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhcc
Q 002985 773 QWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDL 836 (861)
Q Consensus 773 a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~ 836 (861)
..|.|.+.||+|+++.||.+|++.|+||..++..+.. +.+.|.|.++.+...+..+.+.|..
T Consensus 7 ~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~--~~f~~~~~v~~~~~~~~~l~~~L~~ 68 (192)
T 1u8s_A 7 LVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFG--KEFTLLMLISGSPSNITRVETTLPL 68 (192)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEET--TEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecC--CceEEEEEEecCCCCHHHHHHHHHH
Confidence 3589999999999999999999999999998876543 5677777777222344555544443
No 37
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=96.28 E-value=0.0066 Score=50.50 Aligned_cols=52 Identities=25% Similarity=0.287 Sum_probs=43.7
Q ss_pred CCceEecCCCCcHHHHHHhhccccccceEEEEECCEecCCC----ccCCCCCeEEEEec
Q 002985 547 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPT----HVLANAEVVEIITY 601 (861)
Q Consensus 547 ~G~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~l~----~~L~~gd~VeIit~ 601 (861)
+|+.+++ .|+|+.|+--.+.- ....+..-|||+.++.+ ++|++||.|+|++.
T Consensus 5 Ng~~~~~-~~~tv~~ll~~l~~--~~~~v~vavN~~~v~~~~~~~~~L~dgD~v~i~~~ 60 (64)
T 2cu3_A 5 NGEPRPL-EGKTLKEVLEEMGV--ELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVAL 60 (64)
T ss_dssp TTEEECC-TTCCHHHHHHHHTB--CGGGEEEEETTEEEEGGGCCCCCCCTTCEEEEEEC
T ss_pred CCEEEEc-CCCcHHHHHHHcCC--CCCcEEEEECCEECCccccCCcCCCCCCEEEEEee
Confidence 6889999 99999999777653 34556788999999976 89999999999984
No 38
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=96.25 E-value=0.016 Score=62.19 Aligned_cols=67 Identities=13% Similarity=0.067 Sum_probs=53.4
Q ss_pred EEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-c---CHHHHHHHHHHhccccC
Q 002985 773 QWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-G---NLESLVNACSSVDLILG 839 (861)
Q Consensus 773 a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~---d~~~L~~l~~~L~~I~g 839 (861)
..|.|.|.||+|+++.||+.|++.|+||..++..++...+.+.|++.++ . +.++|..-+..+-.--|
T Consensus 9 ~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~L~~~f~~la~~l~ 79 (286)
T 3n0v_A 9 WILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPDDFDEAGFRAGLAERSEAFG 79 (286)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCSSCCHHHHHHHHHHHHGGGT
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCCCCCHHHHHHHHHHHHHHcC
Confidence 3599999999999999999999999999999877665567788888777 3 56777776666654333
No 39
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=96.21 E-value=0.013 Score=62.93 Aligned_cols=64 Identities=25% Similarity=0.278 Sum_probs=50.7
Q ss_pred EEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-c----CHHHHHHHHHHhcc
Q 002985 773 QWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-G----NLESLVNACSSVDL 836 (861)
Q Consensus 773 a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~----d~~~L~~l~~~L~~ 836 (861)
..|.|.|.||+|+++.||+.|++.|+||..++...+...+.+.|++.++ . +.++|..-+..+..
T Consensus 7 ~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~L~~~f~~la~ 75 (288)
T 3obi_A 7 YVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAA 75 (288)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCCCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 3599999999999999999999999999999876554557777777776 2 46677766666544
No 40
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=96.09 E-value=0.0053 Score=52.76 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=44.5
Q ss_pred CCceEecCCCCcHHHHHHhhccccccceEEEEECCEecCCC----ccCCCCCeEEEEecCC
Q 002985 547 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPT----HVLANAEVVEIITYNA 603 (861)
Q Consensus 547 ~G~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~l~----~~L~~gd~VeIit~~~ 603 (861)
+|+.+++ .|.|+.|+.-.+.-. ...+++-|||+.||.+ ++|++||.|||++.-.
T Consensus 6 NG~~~e~-~~~Tl~~LL~~l~~~--~~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv~~Vg 63 (73)
T 2kl0_A 6 NGEQREV-QSASVAALMTELDCT--GGHFAVALNYDVVPRGKWDETPVTAGDEIEILTPRQ 63 (73)
T ss_dssp TTEEECC-CCSBHHHHHHHTTCC--SSSCEEEESSSEECHHHHTTCBCCTTCEEEEECCCC
T ss_pred CCEEEEc-CCCcHHHHHHHcCCC--CCcEEEEECCEECChHHcCcccCCCCCEEEEEcccc
Confidence 5889999 999999998766433 3445788999999995 7899999999999653
No 41
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=96.09 E-value=0.0043 Score=54.03 Aligned_cols=56 Identities=13% Similarity=0.315 Sum_probs=45.7
Q ss_pred CCceEecC--CCCcHHHHHHhhccccccceEEEEECCEecCCC----ccCCCCCeEEEEecCC
Q 002985 547 RGEIKNLP--KGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPT----HVLANAEVVEIITYNA 603 (861)
Q Consensus 547 ~G~i~~lp--~gaT~lDfAy~iht~ig~~~~~akVng~~v~l~----~~L~~gd~VeIit~~~ 603 (861)
+|+.+++| .|.|+.|+.-.+.-+- ...+++-|||+.||.+ +.|++||.|||++.-.
T Consensus 6 NGe~~e~~~~~~~Tl~~LL~~l~~~~-~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv~~Vg 67 (78)
T 2k5p_A 6 NGKPSTVDGAESLNVTELLSALKVAQ-AEYVTVELNGEVLEREAFDATTVKDGDAVEFLYFMG 67 (78)
T ss_dssp TTEEEECSSCSCEEHHHHHHHHTCSC-TTTCCEEETTEECCTTHHHHCEECSSBCEEECCCCC
T ss_pred CCEEEEcCCCCCCcHHHHHHHcCCCC-CCcEEEEECCEECChHHcCcccCCCCCEEEEEeeec
Confidence 68999999 9999999987665331 3344688999999997 7899999999999643
No 42
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=95.87 E-value=0.022 Score=61.17 Aligned_cols=67 Identities=24% Similarity=0.249 Sum_probs=51.3
Q ss_pred EEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-c--CHHHHHHHHHHhccccC
Q 002985 773 QWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-G--NLESLVNACSSVDLILG 839 (861)
Q Consensus 773 a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~--d~~~L~~l~~~L~~I~g 839 (861)
..|.|.|.||+|+++.||+.|++.|+||..++...+...+.+.|++.++ . +.++|..-+..+..=-|
T Consensus 8 ~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~L~~~f~~la~~~~ 77 (287)
T 3nrb_A 8 YVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPVAGVNDFNSAFGKVVEKYN 77 (287)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC---CHHHHHHHHHHGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 3599999999999999999999999999999876555567788888777 3 45566666666554333
No 43
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=95.76 E-value=0.015 Score=67.43 Aligned_cols=69 Identities=17% Similarity=0.258 Sum_probs=56.8
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeee
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWS 844 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~gV~~Vs 844 (861)
.|.+...|+||+++.|+++|++.+|||.++.+...+..+.+.|.+.+..... ..++.+|+++++|.+|.
T Consensus 456 ~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~~~--~~~l~~l~~~~~i~~v~ 524 (529)
T 1ygy_A 456 NLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVP--DDVRTAIAAAVDAYKLE 524 (529)
T ss_dssp EEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSCCC--HHHHHHHHHHHTEEEEE
T ss_pred EEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCCCC--HHHHHHHhcCCCccEEE
Confidence 4778899999999999999999999999999876555678999999992222 34677788888888775
No 44
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.57 E-value=0.0054 Score=68.77 Aligned_cols=65 Identities=18% Similarity=0.253 Sum_probs=53.5
Q ss_pred cccCCceeeec--CC-CceEecCCCCcHHHHHHhhccccccceEEEEEC-----------------CE--ecCCCccCCC
Q 002985 535 DLLGSRVFVFT--PR-GEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVN-----------------GN--LVSPTHVLAN 592 (861)
Q Consensus 535 dl~~~~I~Vft--P~-G~i~~lp~gaT~lDfAy~iht~ig~~~~~akVn-----------------g~--~v~l~~~L~~ 592 (861)
+++ +-|++|| |+ -+.+.+++|+|+.|+|+.||||+.+..+.|.|= |+ +..-+|.+++
T Consensus 303 ~~L-~l~~~ft~g~~e~rawti~~G~~a~~aag~IH~d~~~gfi~ae~~~~~d~~~~g~~~~~k~~g~~r~~gk~y~v~d 381 (392)
T 1ni3_A 303 NAL-NLINYFTCGEDEVRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIMHYQDLFDYKTENACRAAGKYLTKGKEYVMES 381 (392)
T ss_dssp HHT-TEEEEEECCSSEEEEEEEETTCBHHHHHHHHCHHHHHTCSEEEEECHHHHHHHTSHHHHHHTTCSCEEETTCBCCT
T ss_pred HHh-CCEEEECCCCCcceeEEeCCCCcHHHHccccchhhhhccEEEEECCHHHHHHcCCHHHHHHcCCccccCCceeeeC
Confidence 444 5788888 33 279999999999999999999999999998884 43 4677899999
Q ss_pred CCeEEEEe
Q 002985 593 AEVVEIIT 600 (861)
Q Consensus 593 gd~VeIit 600 (861)
||+|.+-.
T Consensus 382 gdv~~f~f 389 (392)
T 1ni3_A 382 GDIAHWKA 389 (392)
T ss_dssp TCEEECC-
T ss_pred CCEEEEEc
Confidence 99998765
No 45
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=95.32 E-value=0.056 Score=54.44 Aligned_cols=63 Identities=22% Similarity=0.105 Sum_probs=47.5
Q ss_pred EEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCH---HHHHHHHHHhccc
Q 002985 773 QWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNL---ESLVNACSSVDLI 837 (861)
Q Consensus 773 a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~---~~L~~l~~~L~~I 837 (861)
..|.|.+.||+||++.|+++|++.|+||..+...+.. +.+.|.|.+. .+. +.+..+...|..+
T Consensus 6 ~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~--~~f~m~~~v~~~~~~~~~~~~~l~~~L~~~ 72 (195)
T 2nyi_A 6 FVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLG--GDFAMIVLVSLNAKDGKLIQSALESALPGF 72 (195)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEET--TEEEEEEEEEESSSSSHHHHHHHHHHSTTC
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEEC--CeEEEEEEEEecCccchhHHHHHHHHHHHH
Confidence 4589999999999999999999999999999877543 4566677776 321 1256666666544
No 46
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=95.21 E-value=0.058 Score=60.89 Aligned_cols=72 Identities=17% Similarity=0.205 Sum_probs=58.2
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeeec
Q 002985 772 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWST 845 (861)
Q Consensus 772 ~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~gV~~Vs~ 845 (861)
..+|.+.-.|.||+|+.|+++|++.|+||.+....+. ...+-..++|+.-.+.-..++++|++|+||+.|.+
T Consensus 343 ~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~--~~~~y~~~d~~~~~~~~~~~~~~l~~~~~~~~~r~ 414 (416)
T 3k5p_A 343 GTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTD--GEVGYLVMEADGVGEASDAVLQEIREIPGTIRARL 414 (416)
T ss_dssp SEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEEC--SSCEEEEEEECCCHHHHHHHHHHHHTSTTEEEEEE
T ss_pred ceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCC--CceEEEEEEecCCCCCcHHHHHHHHhCCCEEEEEE
Confidence 3578899999999999999999999999999987754 25666677776112344689999999999998753
No 47
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=95.19 E-value=0.015 Score=49.66 Aligned_cols=52 Identities=23% Similarity=0.328 Sum_probs=39.8
Q ss_pred ceEecCCCCcHHHHHHhh---ccccccceEEEEECCEecCCCccCCCCCeEEEEe
Q 002985 549 EIKNLPKGATVVDYAYMI---HTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIIT 600 (861)
Q Consensus 549 ~i~~lp~gaT~lDfAy~i---ht~ig~~~~~akVng~~v~l~~~L~~gd~VeIit 600 (861)
..+++|.|+|+.|+--.+ |+++..-....-|||+.++.+++|++||.|+|+.
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~p~~~~v~~~v~vNg~~v~~~~~L~~gD~V~i~p 72 (77)
T 2q5w_D 18 EDIVLEQALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIP 72 (77)
T ss_dssp EECCCSSCEEHHHHHHHHHHHCGGGTTCCCEEEETTEEECTTSEECTTCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHCcchhcceEEEEECCEECCCCCCcCCCCEEEEEC
Confidence 356778999999986655 3333221126779999999999999999999986
No 48
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=95.17 E-value=0.053 Score=60.33 Aligned_cols=76 Identities=16% Similarity=0.153 Sum_probs=53.7
Q ss_pred EEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-c----CHHHHHHHHHHhccccCe-eeeecc
Q 002985 773 QWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-G----NLESLVNACSSVDLILGV-LGWSTG 846 (861)
Q Consensus 773 a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~----d~~~L~~l~~~L~~I~gV-~~Vs~g 846 (861)
.-|.|.|.||+|+++.||+.|++.|+||..++..... +.+.|.+.++ . +.++|..-+..+-.--|+ ..+...
T Consensus 13 ~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~--~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 90 (415)
T 3p96_A 13 VLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIR--HRLTLGVLVCCPADVADGPALRHDVEAAIRKVGLDVSIERS 90 (415)
T ss_dssp EEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEET--TEEEEEEEEEECHHHHTSHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEEC--CEeEEEEEEEecCCcCCHHHHHHHHHHHHHHcCeEEEEEEC
Confidence 4599999999999999999999999999999876543 5566665555 2 346676666666433333 445555
Q ss_pred ccCC
Q 002985 847 CSWP 850 (861)
Q Consensus 847 ~~~~ 850 (861)
..++
T Consensus 91 ~~~~ 94 (415)
T 3p96_A 91 DDVP 94 (415)
T ss_dssp SSSC
T ss_pred Cccc
Confidence 4454
No 49
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=94.97 E-value=0.081 Score=50.26 Aligned_cols=59 Identities=14% Similarity=0.196 Sum_probs=45.3
Q ss_pred EEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHh
Q 002985 773 QWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSV 834 (861)
Q Consensus 773 a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L 834 (861)
-.|.|...|++|.|++|+++|++.|+||.++...... ....++|++ .|.+.+.+++.+.
T Consensus 7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~--~~~~~~~~~-~d~~~a~~~L~~~ 65 (144)
T 2f06_A 7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENA--DFGILRGIV-SDPDKAYKALKDN 65 (144)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECS--SCEEEEEEE-SCHHHHHHHHHHT
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecC--CCCEEEEEe-CCHHHHHHHHHHc
Confidence 3688889999999999999999999999999764222 223456665 4777777777764
No 50
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=94.69 E-value=0.044 Score=48.14 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=40.6
Q ss_pred eEecCCCCcHHHHHHhh---cccccc----------ceEEEEECCEecCCCccCCCCCeEEEEe
Q 002985 550 IKNLPKGATVVDYAYMI---HTEIGN----------KMVAAKVNGNLVSPTHVLANAEVVEIIT 600 (861)
Q Consensus 550 i~~lp~gaT~lDfAy~i---ht~ig~----------~~~~akVng~~v~l~~~L~~gd~VeIit 600 (861)
.+++|.|+|+.|+--.+ |+++.. ..+..-|||+.++++++|++||.|.|+.
T Consensus 21 ~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~~~l~~gDeV~i~P 84 (89)
T 3po0_A 21 RVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALGEATAAGDELALFP 84 (89)
T ss_dssp EEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTTSBCCTTCEEEEEC
T ss_pred EEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCCcccCCCCEEEEEC
Confidence 46789999999985554 565532 1246779999999999999999999986
No 51
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=94.45 E-value=0.038 Score=49.73 Aligned_cols=52 Identities=35% Similarity=0.416 Sum_probs=40.2
Q ss_pred ceEecCCCCcHHHHHHhh---cccccc----------ceEEEEECCEecCCCccCCCCCeEEEEe
Q 002985 549 EIKNLPKGATVVDYAYMI---HTEIGN----------KMVAAKVNGNLVSPTHVLANAEVVEIIT 600 (861)
Q Consensus 549 ~i~~lp~gaT~lDfAy~i---ht~ig~----------~~~~akVng~~v~l~~~L~~gd~VeIit 600 (861)
..+++|.|+|+.|+--.+ ++++.. ..+..-|||+.++++++|++||.|+|+.
T Consensus 29 ~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~~~~L~dGDeV~i~p 93 (98)
T 1vjk_A 29 EEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEELKDGDVVGVFP 93 (98)
T ss_dssp EEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTCBCCTTCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCCCCCCCCCCEEEEEC
Confidence 456788899999975554 333321 3357889999999999999999999986
No 52
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=94.18 E-value=0.15 Score=48.46 Aligned_cols=57 Identities=18% Similarity=0.247 Sum_probs=41.9
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHH
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSS 833 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~ 833 (861)
-+.+...|+||++++|+++|+++|+||..+.+.. . ...+.+.|.++ |.+...+++.+
T Consensus 74 vv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~-~-~~~~~~~i~~~-d~~~A~~~L~~ 130 (144)
T 2f06_A 74 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA-N-NNVANVVIRPS-NMDKCIEVLKE 130 (144)
T ss_dssp EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE-E-TTEEEEEEEES-CHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc-c-CCcEEEEEEeC-CHHHHHHHHHH
Confidence 4666788999999999999999999998765542 1 24455555554 77766666654
No 53
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=93.58 E-value=0.25 Score=48.42 Aligned_cols=68 Identities=16% Similarity=0.265 Sum_probs=51.3
Q ss_pred eEEEEEE-EeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCe
Q 002985 772 IQWFSVV-CIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGV 840 (861)
Q Consensus 772 ~a~I~V~-a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV 840 (861)
.+.|.|. ..|++|.+++|.++|++.|+||..+...... ++...+.|+|. .+.+....++.++..--++
T Consensus 25 ~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~-~g~~~isf~v~~~~~~~a~~~l~~~~~~l~~ 94 (167)
T 2re1_A 25 QARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGS-EGTTDFSFTVPRGDYKQTLEILSERQDSIGA 94 (167)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECGGGHHHHHHHHHHSSTTTTC
T ss_pred EEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCC-CCeeEEEEEEechHHHHHHHHHHHHHHHcCC
Confidence 3567776 5899999999999999999999998754222 24567999999 7888888888876443333
No 54
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=93.18 E-value=0.12 Score=44.29 Aligned_cols=47 Identities=23% Similarity=0.210 Sum_probs=35.5
Q ss_pred CCCCcHHHHHHhhc---cccc----cceEEEEECCEecCCCccCCCCCeEEEEe
Q 002985 554 PKGATVVDYAYMIH---TEIG----NKMVAAKVNGNLVSPTHVLANAEVVEIIT 600 (861)
Q Consensus 554 p~gaT~lDfAy~ih---t~ig----~~~~~akVng~~v~l~~~L~~gd~VeIit 600 (861)
|.|+|+.|+--.+. +++. ..-+..-|||+.++++++|++||.|.|+.
T Consensus 23 ~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~~~~l~~gD~V~i~P 76 (81)
T 1fm0_D 23 ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFP 76 (81)
T ss_dssp SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCTTCBCCTTCEEEEEC
T ss_pred CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCCCCCCCCCCEEEEeC
Confidence 67889988765543 2221 12236889999999999999999999986
No 55
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=92.79 E-value=0.16 Score=57.67 Aligned_cols=70 Identities=20% Similarity=0.312 Sum_probs=52.5
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEec-CCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeee
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDR-GRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGW 843 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~-~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~V 843 (861)
-|++.+.|++|+|++|++++++.+|+|.++.-.... +.+.+.+-|.-. ..-.++...+.+|++++.|.++
T Consensus 361 y~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th~~~e~~~~~~~~~~~~~~~v~~~ 432 (444)
T 3mtj_A 361 YLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTHVTLEKNVNAAIAKIEALDAVAGK 432 (444)
T ss_dssp EEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEECSEEHHHHHHHHHHHTTSTTBCSC
T ss_pred EEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEeccCCHHHHHHHHHHHhcCCccccC
Confidence 477888999999999999999999999998533111 112355555555 6788999999999999888765
No 56
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=90.89 E-value=0.6 Score=45.59 Aligned_cols=64 Identities=22% Similarity=0.235 Sum_probs=47.8
Q ss_pred EEEEEEE-eccccHHHHHHHHHHhCCcceeeeEEeEec-CCcEEEEEEEEE-cCHHHHHHHHHHhcc
Q 002985 773 QWFSVVC-IDRRGIMADVTTALATVGVTICSCVAEIDR-GRGIAVMLFHVE-GNLESLVNACSSVDL 836 (861)
Q Consensus 773 a~I~V~a-~DR~GlLadItsvIa~~~iNI~sv~~~~~~-~~~~a~m~ftVE-~d~~~L~~l~~~L~~ 836 (861)
+.|.|.. .|++|.+++|.++|++.++||..+...... +.+...+.|+|. .+.+...+++.++..
T Consensus 17 a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a~~~L~~~~~ 83 (167)
T 2dt9_A 17 AQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALEPVLA 83 (167)
T ss_dssp EEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHHHHHHHHHHH
Confidence 4455543 789999999999999999999998653211 123678999999 888777777777543
No 57
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=90.77 E-value=1.1 Score=41.26 Aligned_cols=67 Identities=9% Similarity=0.005 Sum_probs=55.2
Q ss_pred EEEEEEeccccHHHHHHHHHHhC---CcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeee
Q 002985 774 WFSVVCIDRRGIMADVTTALATV---GVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGW 843 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~---~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~V 843 (861)
.+.|.+.+..++...|..++.+. +..+ .....+++....++++|. .+.+||..+-.+|+++++|.-|
T Consensus 38 ~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~---~~r~Ss~GkY~Svtv~v~v~S~eQv~aiY~~L~~~~~VkmV 108 (109)
T 1rwu_A 38 TYKVMGQALPELVDQVVEVVQRHAPGDYTP---TVKPSSKGNYHSVSITINATHIEQVETLYEELGKIDIVRMV 108 (109)
T ss_dssp EEEEEEECCTTHHHHHHHHHHHHSSSCCCE---EEEESSCSSEEEEEEEECCSSHHHHHHHHHHHSCSSSCEEE
T ss_pred eEEEEEECcHHHHHHHHHHHHHhCCCCCCc---eecCCCCCeEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence 58999999999999999999774 5565 333334456778999999 9999999999999999999754
No 58
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=90.47 E-value=0.27 Score=42.84 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=38.2
Q ss_pred eEecCCCCcHHHHHHhhccc---ccc----------ceEEEEECCEecC----CCccCCCCCeEEEEe
Q 002985 550 IKNLPKGATVVDYAYMIHTE---IGN----------KMVAAKVNGNLVS----PTHVLANAEVVEIIT 600 (861)
Q Consensus 550 i~~lp~gaT~lDfAy~iht~---ig~----------~~~~akVng~~v~----l~~~L~~gd~VeIit 600 (861)
-.++|.|+|+.|+--.+... +.. ..+.+-|||+.++ ++++|++||.|+|+.
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~~~~~l~~gD~V~i~p 85 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMKGLDTEIKDDDKIDLFP 85 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTCSSSCBCCTTCEEEEEC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccCCCCcCCCCCCEEEEeC
Confidence 45677889999976555333 111 2346889999997 799999999999986
No 59
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=89.61 E-value=1.6 Score=46.62 Aligned_cols=67 Identities=9% Similarity=0.021 Sum_probs=54.3
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecC-CcEEEEEEEEE--cCHHHHHHHHHHhcccc
Q 002985 772 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRG-RGIAVMLFHVE--GNLESLVNACSSVDLIL 838 (861)
Q Consensus 772 ~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~-~~~a~m~ftVE--~d~~~L~~l~~~L~~I~ 838 (861)
.+.|.+...|++|.|.++.+.++..|+|++.+.....++ .+.+.+-++++ .+-+.+.+++..|+..-
T Consensus 200 ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~~~d~~v~~aL~~L~~~~ 269 (283)
T 2qmx_A 200 KTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGHREDQNVHNALENLREFA 269 (283)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecCCCcHHHHHHHHHHHHhc
Confidence 456777778999999999999999999999999987543 35688888888 34467888999888654
No 60
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=89.14 E-value=1.3 Score=43.80 Aligned_cols=65 Identities=17% Similarity=0.182 Sum_probs=48.3
Q ss_pred eEEEEE-EEeccccHHHHHHHHHHhCCcceeeeEEeEec-CCcEEEEEEEEE-cCHHHHHHHHHHhcc
Q 002985 772 IQWFSV-VCIDRRGIMADVTTALATVGVTICSCVAEIDR-GRGIAVMLFHVE-GNLESLVNACSSVDL 836 (861)
Q Consensus 772 ~a~I~V-~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~-~~~~a~m~ftVE-~d~~~L~~l~~~L~~ 836 (861)
.+.|.| -..|++|.+++|.+.|++.++||..+...+.. ..+...+.|++. .+.+....++.++..
T Consensus 15 ~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d~~~a~~~l~~~~~ 82 (178)
T 2dtj_A 15 EAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSDGRRAMEILKKLQV 82 (178)
T ss_dssp EEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHHHHHHHHHHHTTTT
T ss_pred EEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccccHHHHHHHHHHHHH
Confidence 345666 35899999999999999999999988653221 123566779999 788777788877544
No 61
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=88.44 E-value=1 Score=44.79 Aligned_cols=58 Identities=21% Similarity=0.178 Sum_probs=46.6
Q ss_pred EEeccccHHHHHHHHHHhCCcceeeeEEeEec-CCcEEEEEEEEE-cCHHHHHHHHHHhc
Q 002985 778 VCIDRRGIMADVTTALATVGVTICSCVAEIDR-GRGIAVMLFHVE-GNLESLVNACSSVD 835 (861)
Q Consensus 778 ~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~-~~~~a~m~ftVE-~d~~~L~~l~~~L~ 835 (861)
...|++|.+++|.++|++.++||.-+...... +.+...+.|+|. .+.+.+.+++.++.
T Consensus 23 ~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~a~~~L~~~~ 82 (181)
T 3s1t_A 23 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDSLR 82 (181)
T ss_dssp EEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHHHHHHHHHTH
T ss_pred cCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHHHHHHHHHHH
Confidence 36799999999999999999999988643222 145678999999 88888888888764
No 62
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=88.29 E-value=0.93 Score=40.77 Aligned_cols=69 Identities=23% Similarity=0.306 Sum_probs=51.3
Q ss_pred eEEEEEEEeccccHHHHHHHHHHh-CCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeeecccc
Q 002985 772 IQWFSVVCIDRRGIMADVTTALAT-VGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWSTGCS 848 (861)
Q Consensus 772 ~a~I~V~a~DR~GlLadItsvIa~-~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~Vs~g~~ 848 (861)
.+.|-|.+ ++|-+.+|.+.|++ .|+-| ... +... ..+-+++| .+.+.|.+.+.+|++++||++++-==.
T Consensus 7 IsslvV~~--~p~~~~~V~~~L~~ipgvEi---~~~-~~~~--GkiVV~iEa~~~~~l~~~i~~I~~i~GVlst~lvy~ 77 (95)
T 2jsx_A 7 VCSLVVQA--KSERISDISTQLNAFPGCEV---AVS-DAPS--GQLIVVVEAEDSETLIQTIESVRNVEGVLAVSLVYH 77 (95)
T ss_dssp EEEEEEEE--CTTSHHHHHHHHTTSTTEEE---EEE-ETTT--TEEEEEEEESSHHHHHHHHHHHTTSTTEEEEEESSC
T ss_pred EEEEEEEE--CCCCHHHHHHHHHCCCCeEE---EEe-cCCC--CCEEEEEEeCCHHHHHHHHHHHhcCCCccEEeEEEE
Confidence 45555555 89999999999987 45533 221 2112 36788899 899999999999999999999876433
No 63
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=86.36 E-value=0.89 Score=40.01 Aligned_cols=49 Identities=20% Similarity=0.248 Sum_probs=36.5
Q ss_pred EecCCCCcHHHHHHhh---cccccc------------ceEEEEECCEecC----CCccCCCCCeEEEEe
Q 002985 551 KNLPKGATVVDYAYMI---HTEIGN------------KMVAAKVNGNLVS----PTHVLANAEVVEIIT 600 (861)
Q Consensus 551 ~~lp~gaT~lDfAy~i---ht~ig~------------~~~~akVng~~v~----l~~~L~~gd~VeIit 600 (861)
++ +.|+|+.|+--.+ |+++.. ..+..-|||+.++ ++++|++||.|.|+.
T Consensus 21 ~~-~~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~~~~L~~gDeV~i~P 88 (93)
T 3dwg_C 21 VS-ASGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGLATAIADGDSVTILP 88 (93)
T ss_dssp EE-ECCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGGGCBCCTTCEEEEEE
T ss_pred Ee-cCCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCCCcCCCCCCEEEEEC
Confidence 44 5689999975554 333221 1357889999998 699999999999987
No 64
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=86.28 E-value=0.74 Score=38.99 Aligned_cols=51 Identities=14% Similarity=0.256 Sum_probs=37.9
Q ss_pred ceEecCCCCcHHHHHHhhccc--ccc--ceEEEEECCEe-cCCCccCCCCCeEEEEe
Q 002985 549 EIKNLPKGATVVDYAYMIHTE--IGN--KMVAAKVNGNL-VSPTHVLANAEVVEIIT 600 (861)
Q Consensus 549 ~i~~lp~gaT~lDfAy~iht~--ig~--~~~~akVng~~-v~l~~~L~~gd~VeIit 600 (861)
+.+++ .|+|+.|+--.+... +.. ..+..-|||+. ...+++|++||.|.|+.
T Consensus 14 ~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~l~~gDeV~i~P 69 (74)
T 3rpf_C 14 ENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTPLKDGDVISLLP 69 (74)
T ss_dssp CCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCCCCTTCEEEEEC
T ss_pred eEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcCCCCCCEEEEEC
Confidence 34677 789999986555432 221 33567799999 77889999999999986
No 65
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=86.19 E-value=0.72 Score=41.41 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=36.7
Q ss_pred eEecCCCCcHHHHHHhh---ccccccc---------eE-------EEEECCEec----CCCccCCCCCeEEEEe
Q 002985 550 IKNLPKGATVVDYAYMI---HTEIGNK---------MV-------AAKVNGNLV----SPTHVLANAEVVEIIT 600 (861)
Q Consensus 550 i~~lp~gaT~lDfAy~i---ht~ig~~---------~~-------~akVng~~v----~l~~~L~~gd~VeIit 600 (861)
-.+++ |+|+.|+--.+ |+++... .+ ..-|||+.+ .++++|++||.|+|+.
T Consensus 22 ~~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~~~~~~L~~gD~V~i~p 94 (99)
T 2l52_A 22 ELPLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLEGLETLLKDSDEIGILP 94 (99)
T ss_dssp EEEEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTTSTTSCCCTTEEEEEEC
T ss_pred eEEEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccCCCCCCCCCCCEEEEEC
Confidence 34555 78998875554 4444332 23 788999999 7899999999999986
No 66
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=85.01 E-value=2.3 Score=45.15 Aligned_cols=66 Identities=9% Similarity=0.156 Sum_probs=52.5
Q ss_pred EEEEEEE---eccccHHHHHHHHHHhCCcceeeeEEeEecC-CcEEEEEEEEE-cCHHHHHHHHHHhcccc
Q 002985 773 QWFSVVC---IDRRGIMADVTTALATVGVTICSCVAEIDRG-RGIAVMLFHVE-GNLESLVNACSSVDLIL 838 (861)
Q Consensus 773 a~I~V~a---~DR~GlLadItsvIa~~~iNI~sv~~~~~~~-~~~a~m~ftVE-~d~~~L~~l~~~L~~I~ 838 (861)
+.|.+.. .|++|.|.++.+.++..|+|++.+.....++ .+.+.+-++++ .+-+.+..++..|+..-
T Consensus 187 tsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e~~~d~~v~~aL~~L~~~~ 257 (267)
T 2qmw_A 187 TSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQADSAITTDIKKVIAILETLD 257 (267)
T ss_dssp SEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEESCCSCHHHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEecCCcHHHHHHHHHHHHhc
Confidence 3566777 8999999999999999999999999987543 34577777777 45577888888887653
No 67
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=84.47 E-value=3 Score=45.21 Aligned_cols=66 Identities=14% Similarity=0.153 Sum_probs=52.7
Q ss_pred eEEEEEEEe-ccccHHHHHHHHHHhCCcceeeeEEeEecC-CcEEEEEEEEE--cCHHHHHHHHHHhccc
Q 002985 772 IQWFSVVCI-DRRGIMADVTTALATVGVTICSCVAEIDRG-RGIAVMLFHVE--GNLESLVNACSSVDLI 837 (861)
Q Consensus 772 ~a~I~V~a~-DR~GlLadItsvIa~~~iNI~sv~~~~~~~-~~~a~m~ftVE--~d~~~L~~l~~~L~~I 837 (861)
.+.|.+... |++|.|.++.+.++..|+|++.+.....++ .+.+.+-++++ .+-+.+..++..|+..
T Consensus 201 kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~aL~~L~~~ 270 (313)
T 3mwb_A 201 KTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRI 270 (313)
T ss_dssp EEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESCTTSHHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCCCCcHHHHHHHHHHHHh
Confidence 556777774 999999999999999999999999886533 34588888888 3446788888888754
No 68
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=82.43 E-value=3.7 Score=46.23 Aligned_cols=75 Identities=8% Similarity=-0.060 Sum_probs=56.8
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecC-CcEEEEEEEEE-cCHHHHHHHHHHhccc-cCeeeeeccc
Q 002985 772 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRG-RGIAVMLFHVE-GNLESLVNACSSVDLI-LGVLGWSTGC 847 (861)
Q Consensus 772 ~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~-~~~a~m~ftVE-~d~~~L~~l~~~L~~I-~gV~~Vs~g~ 847 (861)
.+.|.+...|++|.|.++.++++..|||++.+.+...++ ...+.+-++++ .+-+.+..++..|+.. ..-+.|- ||
T Consensus 34 KTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~eh~~d~~v~~AL~eL~~~~~~~vkiL-Gs 111 (429)
T 1phz_A 34 AISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSLRNDIGATVHEL-SR 111 (429)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHHHHHHHHHHHHHTTCCCEEEE-ET
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEeeCCCHHHHHHHHHHHhhccceEEEC-CC
Confidence 456777889999999999999999999999999886533 34567777777 3444589999999888 4433332 55
No 69
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=82.24 E-value=3.3 Score=42.00 Aligned_cols=66 Identities=20% Similarity=0.130 Sum_probs=50.4
Q ss_pred eEEEEEE-EeccccHHHHHHHHHHhCCcceeeeEEeEe-cCCcEEEEEEEEE-cCHHHHHHHHHHhccc
Q 002985 772 IQWFSVV-CIDRRGIMADVTTALATVGVTICSCVAEID-RGRGIAVMLFHVE-GNLESLVNACSSVDLI 837 (861)
Q Consensus 772 ~a~I~V~-a~DR~GlLadItsvIa~~~iNI~sv~~~~~-~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I 837 (861)
.+.|.|. ..|++|+++.|-++|++.+|||.-+..... .+.+...+.|++. .+.+....++.++..-
T Consensus 35 ~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d~~~~~~~l~~~~~~ 103 (200)
T 4go7_X 35 EAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDSLRNE 103 (200)
T ss_dssp EEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGGHHHHHHHHHTTHHH
T ss_pred EEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhhHHHHHHHHHHHHhh
Confidence 3445553 689999999999999999999988853221 1245788999999 8888888888887643
No 70
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=81.16 E-value=6.3 Score=44.13 Aligned_cols=77 Identities=14% Similarity=0.124 Sum_probs=54.7
Q ss_pred eEEEEEE-EeccccHHHHHHHHHHhCCcceeeeEEeEec-CCcEEEEEEEEE-cCHHHHHHHHHHhccccCe--eeeecc
Q 002985 772 IQWFSVV-CIDRRGIMADVTTALATVGVTICSCVAEIDR-GRGIAVMLFHVE-GNLESLVNACSSVDLILGV--LGWSTG 846 (861)
Q Consensus 772 ~a~I~V~-a~DR~GlLadItsvIa~~~iNI~sv~~~~~~-~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV--~~Vs~g 846 (861)
.+.|.|. ..|++|.+++|.+.|++.++||.-+...+.+ ..+...+.|+|. .+.+....++.++..--+. ..+..+
T Consensus 264 ~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~~~a~~~l~~~~~~~~~~~v~~~~~ 343 (421)
T 3ab4_A 264 EAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVLYDDQ 343 (421)
T ss_dssp EEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTHHHHHHHHHHHHTTTTCSEEEEECC
T ss_pred EEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhHHHHHHHHHHHHHHcCCceEEEeCC
Confidence 4457776 6899999999999999999999988532111 124578999999 8888888888877543343 334434
Q ss_pred cc
Q 002985 847 CS 848 (861)
Q Consensus 847 ~~ 848 (861)
|+
T Consensus 344 ~a 345 (421)
T 3ab4_A 344 VG 345 (421)
T ss_dssp EE
T ss_pred eE
Confidence 44
No 71
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=81.01 E-value=1.9 Score=42.65 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=38.6
Q ss_pred eEecCCCCcHHHHHHhh---cccccc---------ceEEEEECCEecCC----CccCCCCCeEEEEecC
Q 002985 550 IKNLPKGATVVDYAYMI---HTEIGN---------KMVAAKVNGNLVSP----THVLANAEVVEIITYN 602 (861)
Q Consensus 550 i~~lp~gaT~lDfAy~i---ht~ig~---------~~~~akVng~~v~l----~~~L~~gd~VeIit~~ 602 (861)
-+++|. +|+.|+--.+ |+++.. ..+..-|||+.++. +++|++||.|+|+..-
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~~dt~L~dGDeVai~PpV 84 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQGLSTPLSPGATLDLFPPV 84 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTGGGCBCCTTCEEEEECSC
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCCCccCCCCCCEEEEECcc
Confidence 446674 8998875554 444432 23468899999998 8999999999999753
No 72
>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14
Probab=80.89 E-value=10 Score=33.48 Aligned_cols=70 Identities=17% Similarity=0.205 Sum_probs=57.0
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccccCee
Q 002985 772 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVL 841 (861)
Q Consensus 772 ~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~gV~ 841 (861)
++-+-|...||.-.=..|=++|.+.+-.|..----..+..+...+.+.|+++.+.+..+..+|.+++||.
T Consensus 7 i~vigIiVe~r~~~a~kvn~iL~~yg~~I~gRmGiP~~~~~~~iIsl~v~~~~d~I~aL~gkLg~i~GV~ 76 (86)
T 2nzc_A 7 FYILTIVVEDREKAYRQVNELLHNFSEDILLRVGYPVREENMAIIFLVLKTDNDTIGALSGKLGQISGVR 76 (86)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHHTGGGEEEEEEEEEGGGTEEEEEEEEEECHHHHHHHHHHHHTSTTEE
T ss_pred EEEEEEEEeCchhhHHHHHHHHHhccCEEEEEcCCCcCcCCceEEEEEEECCHHHHHHHHHHhCCCCCEE
Confidence 4456777788886666899999999988865433334556889999999999999999999999999995
No 73
>2h9z_A Hypothetical protein HP0495; feredoxin-like (beta-alpha-beta-BETA-alpha-beta), structural genomics, unknown function; NMR {Helicobacter pylori} SCOP: d.58.54.2 PDB: 2joq_A
Probab=79.28 E-value=2.7 Score=36.94 Aligned_cols=67 Identities=6% Similarity=0.031 Sum_probs=52.0
Q ss_pred EEEEEEecccc-HHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeee
Q 002985 774 WFSVVCIDRRG-IMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGW 843 (861)
Q Consensus 774 ~I~V~a~DR~G-lLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~V 843 (861)
.+.|.+.+..+ +...|.+++ +.+..+.. ....+++....++++|. .+.+||..+-.+|.+++||.=|
T Consensus 17 ~~Kvig~~~~~~~~~~V~~v~-~~~~~~~~--~r~Ss~GkY~Svtv~i~a~s~eq~~~iY~~L~~~~~Vk~v 85 (86)
T 2h9z_A 17 DYRVIMTTKDTSTLKELLETY-QRPFKLEF--KNTSKNAKFYSFNVSMEVSNESERNEIFQKISQLDKVVQT 85 (86)
T ss_dssp EEEEEECCSCTHHHHHHSTTC-CSSEECCB--SCSSCCSSCEEEEEEEECCSHHHHHHHHHHHTCSSCEEEE
T ss_pred eEEEEEECCcHHHHHHHHHHH-hccCCCcc--cccCCCCeEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence 58999999999 999999888 44444322 12223445678899999 9999999999999999999743
No 74
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=78.45 E-value=7 Score=42.64 Aligned_cols=57 Identities=14% Similarity=0.271 Sum_probs=44.9
Q ss_pred ccccHHHHHHHHHHhCCcceeeeEEeEecC-CcEEEEEEEEEc--CHHHHHHHHHHhccc
Q 002985 781 DRRGIMADVTTALATVGVTICSCVAEIDRG-RGIAVMLFHVEG--NLESLVNACSSVDLI 837 (861)
Q Consensus 781 DR~GlLadItsvIa~~~iNI~sv~~~~~~~-~~~a~m~ftVE~--d~~~L~~l~~~L~~I 837 (861)
|++|.|.++-+.++..|||++.+.....++ .+.+.+-+++|+ +-+.+..++..|+..
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~AL~~L~~~ 276 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAAPWEERFRDALVEIAEH 276 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSCTTSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCCcCCHHHHHHHHHHHHh
Confidence 799999999999999999999999987643 234666677773 346788888888755
No 75
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=76.14 E-value=4.2 Score=36.24 Aligned_cols=50 Identities=12% Similarity=0.169 Sum_probs=35.4
Q ss_pred EecC--CCCcHHHHHHhh---ccc----c------cc--ceEEEEECCEecC----CCccCCCCCeEEEEe
Q 002985 551 KNLP--KGATVVDYAYMI---HTE----I------GN--KMVAAKVNGNLVS----PTHVLANAEVVEIIT 600 (861)
Q Consensus 551 ~~lp--~gaT~lDfAy~i---ht~----i------g~--~~~~akVng~~v~----l~~~L~~gd~VeIit 600 (861)
+++| .|+|+.|+--.+ |+. + |. ..+-.-|||+.+. ++++|++||.|.|+.
T Consensus 24 ~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~~d~~L~dgDeVa~~P 94 (99)
T 2qjl_A 24 IKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEKDYILEDGDIISFTS 94 (99)
T ss_dssp EEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTGGGCBCCTTCEEEEEE
T ss_pred EecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCCCCcCcCCCCEEEEEC
Confidence 4667 789999975554 322 2 20 1234789999764 789999999999986
No 76
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=75.32 E-value=6.4 Score=38.15 Aligned_cols=56 Identities=18% Similarity=0.181 Sum_probs=42.3
Q ss_pred eEEEEEEEec---cccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHH
Q 002985 772 IQWFSVVCID---RRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSS 833 (861)
Q Consensus 772 ~a~I~V~a~D---R~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~ 833 (861)
.+.+.|.+.+ ++|+++.+.++|++.||||..+++. . ..+.|-|. .|.+...+++.+
T Consensus 95 ~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~S--e----~~is~vv~~~d~~~Av~~Lh~ 154 (167)
T 2dt9_A 95 IAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIATS--E----VRISVIIPAEYAEAALRAVHQ 154 (167)
T ss_dssp EEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEEC--S----SEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEcc--C----CEEEEEEeHHHHHHHHHHHHH
Confidence 4567787766 9999999999999999999777532 1 25777788 777776665543
No 77
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=74.57 E-value=3.3 Score=47.91 Aligned_cols=63 Identities=13% Similarity=0.113 Sum_probs=54.1
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cC-HHHHHHHHHHhccc
Q 002985 772 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GN-LESLVNACSSVDLI 837 (861)
Q Consensus 772 ~a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d-~~~L~~l~~~L~~I 837 (861)
...+.|..-||+|-|++++++|+ +.||..++-... ..+.+.+.+.|| ++ .+|+..++.+|+.-
T Consensus 338 ~~~~~v~~p~~pg~l~~~~~~l~--~~~i~~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~~~~l~~~ 402 (514)
T 1tdj_A 338 EALLAVTIPEEKGSFLKFCQLLG--GRSVTEFNYRFA-DAKNACIFVGVRLSRGLEERKEILQMLNDG 402 (514)
T ss_dssp EEEEEEECCBSSSCSHHHHHTTS--SSEEEEEEEECC-CSSBCEEEEEEECSSTHHHHHHHHHHHTSS
T ss_pred cccccccCCCCCchHHHHHHHhC--CCceEEEEeecc-CCCeEEEEEEEEeCCcHHHHHHHHHHHHhC
Confidence 45688899999999999999998 699999886632 456789999999 88 99999999999864
No 78
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=73.70 E-value=4.6 Score=38.85 Aligned_cols=68 Identities=9% Similarity=0.075 Sum_probs=48.4
Q ss_pred eEEEEEEE---eccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeeeccc
Q 002985 772 IQWFSVVC---IDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWSTGC 847 (861)
Q Consensus 772 ~a~I~V~a---~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~Vs~g~ 847 (861)
.+.|.|.. .|++|.+++|-++|++.++||.-+.+. . ..+.|+|. .+ .+.+++..|+.. +-+.+..+|
T Consensus 18 va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~~s-~-----~~Isf~v~~~~--~~~~il~~l~~~-~~v~~~~~~ 88 (157)
T 3mah_A 18 ITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVATS-E-----VGVSLTIDNDK--NLPDIVRALSDI-GDVTVDKDM 88 (157)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEECC-S-----SEEEEEESCCT--THHHHHHHHTTT-EEEEEEEEE
T ss_pred EEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEEec-C-----CEEEEEECChH--HHHHHHHHHhcc-CeEEEeCCe
Confidence 34566653 478899999999999999999988743 1 25888888 44 678888888764 333334444
Q ss_pred c
Q 002985 848 S 848 (861)
Q Consensus 848 ~ 848 (861)
+
T Consensus 89 a 89 (157)
T 3mah_A 89 V 89 (157)
T ss_dssp E
T ss_pred E
Confidence 4
No 79
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=72.76 E-value=7.3 Score=34.80 Aligned_cols=69 Identities=14% Similarity=0.167 Sum_probs=52.4
Q ss_pred EEEEE--eccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE---cCHHHHHHHHHHhccccCeeeee
Q 002985 775 FSVVC--IDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE---GNLESLVNACSSVDLILGVLGWS 844 (861)
Q Consensus 775 I~V~a--~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE---~d~~~L~~l~~~L~~I~gV~~Vs 844 (861)
|.|+| .+..-+.+-+.+.|...+.-+.++.+..- +.+...+..++- .+...|++++++|...|||..++
T Consensus 11 v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~-~~~~veI~A~L~at~~~~~~Le~iv~rLs~ep~V~~a~ 84 (94)
T 2lqj_A 11 VRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPA-GDDNITLTAHLLMVGHTPAKLERLVAELSLQPGVYAVH 84 (94)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEEC-SSSCEEEEEEEEEESCCHHHHHHHHHHHHHSTTEEEEE
T ss_pred EEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecC-CCCeEEEEEEEEecCCCHHHHHHHHHHHhCCCCeEEEE
Confidence 55554 45556778888999889999999996632 234344555554 78899999999999999999885
No 80
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=72.32 E-value=11 Score=31.45 Aligned_cols=70 Identities=13% Similarity=0.088 Sum_probs=50.2
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHH-HhccccCeeeeeccccCC
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACS-SVDLILGVLGWSTGCSWP 850 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~-~L~~I~gV~~Vs~g~~~~ 850 (861)
-+.|.+. +|-..++.+.|++.. +|..+...+ |.+.+.+.+. .|.++|.+++. +|..++||.++.+--...
T Consensus 5 ~v~v~~~--~~~~~~~~~~l~~~p-eV~~~~~vt----G~~d~l~~v~~~d~~~l~~~~~~~l~~~~gV~~~~t~ivl~ 76 (83)
T 2zbc_A 5 IVLINTD--AGGEDEVFERLKSMS-EVTEVHVVY----GVYDIVVKVEADSMDKLKDFVTNTIRKLPKVRSTLTMIIVE 76 (83)
T ss_dssp EEEEEES--TTCHHHHHHHHTTCT-TEEEEEECS----SSCSEEEEEECSSHHHHHHHHHHTGGGSTTEEEEEEEECCT
T ss_pred EEEEEEc--CCCHHHHHHHHhCCC-CeEEEEEEe----ccCCEEEEEEECCHHHHHHHHHHHhcCCCCEeEEEEEEEEE
Confidence 3445443 344688999888654 677776542 3355677777 89999999996 999999999987654443
No 81
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=71.38 E-value=8.4 Score=37.86 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=41.1
Q ss_pred eEEEEEEEe---ccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHH
Q 002985 772 IQWFSVVCI---DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSS 833 (861)
Q Consensus 772 ~a~I~V~a~---DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~ 833 (861)
.+-|.|.+. +++|+++.+.++|++.+|||..+++. . ..+.|-|. .|.+...+++.+
T Consensus 95 ~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~istS--e----~~Is~vV~~~d~~~Av~~Lh~ 154 (178)
T 2dtj_A 95 VGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTS--E----IRISVLIREDDLDAAARALHE 154 (178)
T ss_dssp EEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEE--T----TEEEEEEEGGGHHHHHHHHHH
T ss_pred eEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEEcC--C----CeEEEEEeHHHHHHHHHHHHH
Confidence 456777776 88999999999999999999988632 1 33566677 666665555443
No 82
>2wvf_A Hpnikr, putative nickel-responsive regulator; transcription factor, transcription regulation, RHH, DNA-binding, transcription, metal-binding; 1.60A {Helicobacter pylori} PDB: 2wvc_A 3pht_A 2ca9_A 2cad_A* 2caj_A 3lgh_A 2wvd_A 2wve_A* 2wvb_A 2y3y_A* 3qsi_B
Probab=70.99 E-value=45 Score=32.02 Aligned_cols=84 Identities=12% Similarity=0.097 Sum_probs=59.8
Q ss_pred cccCC---CCCceeEEEEEEEecc-ccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccc
Q 002985 762 ATWHN---LEGHSIQWFSVVCIDR-RGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLI 837 (861)
Q Consensus 762 V~W~~---~~~~~~a~I~V~a~DR-~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I 837 (861)
-+|.. .++.-...|.+...++ +++-..++.+..+..--|.+- +...-+.+.....|.|+++.+++..+..+|..+
T Consensus 52 ~~~~~~~~~~~~~~Gvi~ivydh~~~~l~~~l~~iqh~~~d~Iis~-~Hvhld~~~clEvivv~G~~~~I~~l~~kl~~l 130 (148)
T 2wvf_A 52 DNWAEDNPNDESKIAVLVVIYDGGQRELNQRMIDIQHASGTHVLCT-THIHMDEHNCLETIILQGNSFEIQRLQLEIGGL 130 (148)
T ss_dssp SSCTTCSCCSCCEEEEEEEEEETTSTTHHHHHHHHHHHCSSEEEEE-EEEECSSSEEEEEEEEEECHHHHHHHHHHHHTS
T ss_pred HhhhhcccCCCceEEEEEEEEcCCchhHHHHHHHHHHhccCeEEEE-eeEEcCCCCEEEEEEEEcCHHHHHHHHHHHhcc
Confidence 36864 3333345666665555 578889999999876555444 222223366777788889999999999999999
Q ss_pred cCeeeeecc
Q 002985 838 LGVLGWSTG 846 (861)
Q Consensus 838 ~gV~~Vs~g 846 (861)
+||.-++.-
T Consensus 131 kGV~~~kl~ 139 (148)
T 2wvf_A 131 RGVKFAKLT 139 (148)
T ss_dssp TTEEEEEEE
T ss_pred CCeeEEEEE
Confidence 999988763
No 83
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=70.75 E-value=9.3 Score=37.04 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=38.0
Q ss_pred eEEEEEEEec---cccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHH
Q 002985 772 IQWFSVVCID---RRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVN 829 (861)
Q Consensus 772 ~a~I~V~a~D---R~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~ 829 (861)
.+-+.|.+.+ ++|+++.+.++|++.|+||..+.+ .. ..+.|-|. .+.+...+
T Consensus 103 ~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~ist--se----~~is~vv~~~d~~~av~ 158 (167)
T 2re1_A 103 VCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIST--SE----IKVSVLIDEKYMELATR 158 (167)
T ss_dssp EEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEEE--CS----SEEEEEEEGGGHHHHHH
T ss_pred EEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEEc--cc----CEEEEEEeHHHHHHHHH
Confidence 4567888776 999999999999999999999863 21 23566666 55554433
No 84
>2hza_A Nickel-responsive regulator; nickel-binding, ribbon-helix-helix, transcription factor, ME binding protein; HET: 3CM; 2.10A {Escherichia coli} SCOP: a.43.1.3 d.58.18.4 PDB: 1q5v_A* 2hzv_A 3od2_A*
Probab=68.81 E-value=41 Score=31.55 Aligned_cols=85 Identities=9% Similarity=0.083 Sum_probs=60.5
Q ss_pred cccCCCCCceeEEEEEEEecc-ccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccccCe
Q 002985 762 ATWHNLEGHSIQWFSVVCIDR-RGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGV 840 (861)
Q Consensus 762 V~W~~~~~~~~a~I~V~a~DR-~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~gV 840 (861)
-+|...++.-...|.+...++ +++-..++.+..+..--|.+-. ...-+.+.....|.|+++.+++..+..+|..++||
T Consensus 43 ~~~~~~~~~~~gvi~ivydh~~~~l~~~l~~iqh~~~d~I~s~~-hvhl~~~~clevivv~G~~~~I~~l~~~l~~~~GV 121 (133)
T 2hza_A 43 EATQQHGTQGFAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATL-HVHINHDDCLEIAVLKGDMGDVQHFADDVIAQRGV 121 (133)
T ss_dssp HHHTCTTCEEEEEEEEEEESSTTSHHHHHHHHHHHTTTTEEEEE-EEECSSSEEEEEEEEEEEHHHHHHHHHHHHHSTTE
T ss_pred hhhhccCCceEEEEEEEecCCchhHHHHHHHHHHhccCeEEEEe-eEEcCCCcEEEEEEEEcCHHHHHHHHHHHhccCCe
Confidence 368654333345666665555 5788899999998765554442 22223466777788889999999999999999999
Q ss_pred eeeeccc
Q 002985 841 LGWSTGC 847 (861)
Q Consensus 841 ~~Vs~g~ 847 (861)
.-+..-.
T Consensus 122 ~~~~l~~ 128 (133)
T 2hza_A 122 RHGHLQC 128 (133)
T ss_dssp EEEEEEE
T ss_pred EEEeeEE
Confidence 9877543
No 85
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=66.90 E-value=20 Score=30.25 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=46.7
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHH-HhccccCeeeeec
Q 002985 774 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACS-SVDLILGVLGWST 845 (861)
Q Consensus 774 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~-~L~~I~gV~~Vs~ 845 (861)
-+.|.+. ++-..++.+.|++.. .|..|..-+ |.+.+.+.|. .|.++|.+++. +|..++||.++.+
T Consensus 5 ~v~v~~~--~~~~~~~~~~l~~~p-eV~e~~~vt----G~~D~ll~v~~~d~~~l~~~i~~~l~~~~gV~~~~T 71 (83)
T 2cvi_A 5 FILMVTA--AGKEREVMEKLLAMP-EVKEAYVVY----GEYDLIVKVETDTLKDLDQFITEKIRKMPEIQMTST 71 (83)
T ss_dssp EEEEEEC--TTCHHHHHHHHHTST-TEEEEEECB----SSCSEEEEEEESSHHHHHHHHHTTGGGCTTEEEEEE
T ss_pred EEEEEEc--CCCHHHHHHHHhCCC-CeeEEEEEc----ccCCEEEEEEECCHHHHHHHHHHHhccCCCEeEEEE
Confidence 3444442 344688999998753 567776543 2345666677 79999999997 9999999998865
No 86
>2bj7_A Nickel responsive regulator; transcription, repressor, NIKR, DNA- binding, metal-binding, transcription regulation; HET: PG4; 2.1A {Pyrococcus horikoshii} SCOP: a.43.1.3 d.58.18.4 PDB: 2bj1_A 2bj3_A* 2bj8_A* 2bj9_A*
Probab=65.24 E-value=64 Score=30.42 Aligned_cols=85 Identities=9% Similarity=0.056 Sum_probs=61.0
Q ss_pred ccCCCCCceeEEEEEEEeccc-cHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccccCee
Q 002985 763 TWHNLEGHSIQWFSVVCIDRR-GIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVL 841 (861)
Q Consensus 763 ~W~~~~~~~~a~I~V~a~DR~-GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~gV~ 841 (861)
+|...++.-...|.+.-.++. ++-..++.+..+..--|.+-. ...-+.+.....|.|+++.+++..+..+|..++||.
T Consensus 46 ~~~~~~~~~~GvI~ivydh~~~~l~~~l~~iqh~~~d~I~s~~-hvhl~~~~clevivv~G~~~~I~~l~~~l~~~~GV~ 124 (138)
T 2bj7_A 46 EWEVGNEEVAGTITIVYNHDEGDVVKALLDLQHEYLDEIISSL-HVHMDEHNCLEVIVVKGEAKKIKMIADKLLSLKGVK 124 (138)
T ss_dssp TSCCCSSEEEEEEEEEEETTSTTHHHHHHHHHHHTTTTEEEEE-EEECSSSEEEEEEEEEEEHHHHHHHHHHHHTSTTEE
T ss_pred hhhcccCceEEEEEEEecCcchhHHHHHHHHHHhccCeEEEEe-eEEcCCCCEEEEEEEEcCHHHHHHHHHHHhccCCee
Confidence 686443333455666555554 788899999998765554442 222233667777888899999999999999999999
Q ss_pred eeecccc
Q 002985 842 GWSTGCS 848 (861)
Q Consensus 842 ~Vs~g~~ 848 (861)
-+..-..
T Consensus 125 ~~~l~~~ 131 (138)
T 2bj7_A 125 HGKLVMT 131 (138)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9887655
No 87
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=63.00 E-value=15 Score=36.20 Aligned_cols=58 Identities=24% Similarity=0.220 Sum_probs=44.0
Q ss_pred eEEEEEEEe---ccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhc
Q 002985 772 IQWFSVVCI---DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVD 835 (861)
Q Consensus 772 ~a~I~V~a~---DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~ 835 (861)
.+-+.|.+. +++|+++.+.++|++.+|||..+++. . ..+.|-|. .+.+...+.+.+-=
T Consensus 96 va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~IstS-e-----i~Is~vV~~~d~~~Av~aLH~~f 157 (181)
T 3s1t_A 96 IGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTS-E-----IRISVLCRDTELDKAVVALHEAF 157 (181)
T ss_dssp EEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEE-T-----TEEEEEEEGGGHHHHHHHHHHHH
T ss_pred EEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEEcC-C-----CEEEEEEeHHHHHHHHHHHHHHH
Confidence 456677665 89999999999999999999999732 1 34677888 77777666665533
No 88
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4
Probab=62.96 E-value=5.6 Score=41.47 Aligned_cols=52 Identities=25% Similarity=0.181 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhcCCCcccCCCccchHHHHHHHHHHcCCCHH-HHHHHhhccc
Q 002985 149 VRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWE-SIAAGLLHDT 200 (861)
Q Consensus 149 l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa~l~lD~~-ti~AALLHDv 200 (861)
|.+|+++-.......-...-.|-+.|.++.|+...+-|.|.+ .++||||||.
T Consensus 38 i~ea~~~Ln~lvDeSDPD~~v~ql~HaLQTAe~ar~dg~d~dw~~laaLlHDL 90 (250)
T 2ibn_A 38 VMEAVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDL 90 (250)
T ss_dssp HHHHHHHGGGCCCTTC---CCCHHHHHHHHHHHHHHHSTTCHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhcCCcCCCCcccHHHHHHHHHHHHHHhCcChhHHHHHHHHhcc
Confidence 444555444443333222345668999999999988888844 4599999986
No 89
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=61.82 E-value=10 Score=38.90 Aligned_cols=53 Identities=15% Similarity=0.082 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhhcCCCcccCCCccchHHHHHHHHHH----cCCCHHH-HHHHhhccccc
Q 002985 147 ELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGE----LELDWES-IAAGLLHDTVE 202 (861)
Q Consensus 147 ~~l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa~----l~lD~~t-i~AALLHDvvE 202 (861)
+.+.++..|+.+.+.+.. +.--+.|.+.|+.+... .+.|.+. .+||||||+..
T Consensus 5 ~~i~~~~~~v~~~l~~~~---~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AAlLHDig~ 62 (223)
T 3djb_A 5 EKIEKTITFVKHILEKDA---SGHDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVAD 62 (223)
T ss_dssp HHHHHHHHHHHHHTTSSS---CTTTHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTTHHHHC
T ss_pred HHHHHHHHHHHHHhhcCC---CcCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccc
Confidence 568888899988876542 22348899999987654 3667764 68999999984
No 90
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=60.50 E-value=10 Score=38.89 Aligned_cols=53 Identities=15% Similarity=0.081 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhhcCCCcccCCCccchHHHHHHHHH----HcCCCHHH-HHHHhhccccc
Q 002985 147 ELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILG----ELELDWES-IAAGLLHDTVE 202 (861)
Q Consensus 147 ~~l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa----~l~lD~~t-i~AALLHDvvE 202 (861)
+.+.++.+|+.+.+.+.. +.--+.|.+.|+.+.. ..+.|.+. .+||||||+..
T Consensus 5 ~~i~~~~~~v~~~l~~~~---~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AalLHDig~ 62 (223)
T 3dto_A 5 AILQSAEAWVKKQLMDEY---SGHDWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLID 62 (223)
T ss_dssp HHHHHHHHHHHHTTTTC-------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhhcCC---CCCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccc
Confidence 568888889988776542 2234789999988654 34778764 68999999983
No 91
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=59.95 E-value=11 Score=34.67 Aligned_cols=52 Identities=12% Similarity=0.091 Sum_probs=36.5
Q ss_pred EecC---CCCcHHHHHHhhccc-------c----c--cceEEEEECCEec----CCCccCCCCCeEEEEecC
Q 002985 551 KNLP---KGATVVDYAYMIHTE-------I----G--NKMVAAKVNGNLV----SPTHVLANAEVVEIITYN 602 (861)
Q Consensus 551 ~~lp---~gaT~lDfAy~iht~-------i----g--~~~~~akVng~~v----~l~~~L~~gd~VeIit~~ 602 (861)
+++| .++|+.|+--.+-.. + | +.-+-..|||+.+ .++|+|++||.|.|+..-
T Consensus 34 vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gldt~L~dGDeV~iip~v 105 (114)
T 1wgk_A 34 VALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSILFISTL 105 (114)
T ss_dssp EEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTTTCBCCSSEEEEEEECS
T ss_pred EEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeeeccCCcCcCCCCCCEEEEeCCC
Confidence 6667 346988865444322 2 2 2246799999854 689999999999999853
No 92
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=59.48 E-value=34 Score=40.14 Aligned_cols=76 Identities=16% Similarity=0.135 Sum_probs=54.8
Q ss_pred EEEEE-EEeccccHHHHHHHHHHhCCcceeeeEEeEecC--Cc--EEEEEEEEE-cCHHHHHHHHHHhccccC--eeeee
Q 002985 773 QWFSV-VCIDRRGIMADVTTALATVGVTICSCVAEIDRG--RG--IAVMLFHVE-GNLESLVNACSSVDLILG--VLGWS 844 (861)
Q Consensus 773 a~I~V-~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~--~~--~a~m~ftVE-~d~~~L~~l~~~L~~I~g--V~~Vs 844 (861)
+.|.| ...|++|+.+.|-+.|++.++|+.-+....... .+ ...+.|+|. .+.+....++.+++.--+ =+.+.
T Consensus 445 a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~~d~~~a~~~l~~~~~~~~~~~v~~~ 524 (600)
T 3l76_A 445 AQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAEGDSSQAEAILQPLIKDWLDAAIVVN 524 (600)
T ss_dssp EEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEHHHHHHHHHHHHHHTTTSTTCEEEEE
T ss_pred EEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeHHHHHHHHHHHHHHHHhcCCceEEEe
Confidence 44555 468999999999999999999997665433221 13 578999999 899999999988775333 24444
Q ss_pred cccc
Q 002985 845 TGCS 848 (861)
Q Consensus 845 ~g~~ 848 (861)
.+|+
T Consensus 525 ~~~a 528 (600)
T 3l76_A 525 KAIA 528 (600)
T ss_dssp CCEE
T ss_pred CCeE
Confidence 4544
No 93
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=59.30 E-value=6.7 Score=36.74 Aligned_cols=24 Identities=25% Similarity=0.159 Sum_probs=21.5
Q ss_pred EEEECCEecCCCccCCCCCeEEEE
Q 002985 576 AAKVNGNLVSPTHVLANAEVVEII 599 (861)
Q Consensus 576 ~akVng~~v~l~~~L~~gd~VeIi 599 (861)
+..|||+.|.-.++|++||.|.|-
T Consensus 91 gt~VNG~~V~~~~~L~~GD~I~lG 114 (124)
T 3fm8_A 91 RTFVNGSSVSSPIQLHHGDRILWG 114 (124)
T ss_dssp CEEETTEECCSCEEECTTCEEEET
T ss_pred CEEECCEEcCCcEECCCCCEEEEC
Confidence 689999999877889999999874
No 94
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=58.89 E-value=12 Score=34.33 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=35.7
Q ss_pred eEecC----CCCcHHHHHHhhccc-------c----c----cceEEEEECCEec----CCCccCCCCCeEEEEec
Q 002985 550 IKNLP----KGATVVDYAYMIHTE-------I----G----NKMVAAKVNGNLV----SPTHVLANAEVVEIITY 601 (861)
Q Consensus 550 i~~lp----~gaT~lDfAy~iht~-------i----g----~~~~~akVng~~v----~l~~~L~~gd~VeIit~ 601 (861)
-+++| .++|+.|+--.+-.. + | +.-+-..|||+.+ .++|+|++||+|.|+..
T Consensus 24 ~v~l~~~~g~~~TV~dLl~~L~~~~~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~gldt~L~dgD~V~fist 98 (110)
T 2k9x_A 24 SLQLDGVVPTGTNLNGLVQLLKTNYVKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGGMDYVLNDGDTVEFIST 98 (110)
T ss_dssp EECCCCSCGGGCCHHHHHHHHTTTTCCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTSSCCCCCSSCEEEEEEC
T ss_pred EEEeCCcCCCCccHHHHHHHHHHHccccchhhEecCCCcccCCCeEEEECCeeeeccCCcccCCCCcCEEEEeCC
Confidence 45666 335888865444332 1 2 0124589999987 68999999999999874
No 95
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=57.57 E-value=17 Score=36.55 Aligned_cols=50 Identities=26% Similarity=0.186 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhcCCCcccCCCccchHHHHHHHHHH----cCCCHHH-HHHHhhccc
Q 002985 148 LVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGE----LELDWES-IAAGLLHDT 200 (861)
Q Consensus 148 ~l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa~----l~lD~~t-i~AALLHDv 200 (861)
++.++.++......+. .....+.|.+.|+.+... ++.|.+. .+||||||+
T Consensus 14 l~~~~~~~v~~~~~~~---~~~h~~~H~~rV~~~a~~la~~~~~d~~~l~~AaLLHDI 68 (220)
T 2pq7_A 14 LREILNIVREAFKDYD---DPAHDISHTFRVMENASEIASREKCDLQKAIIAALLHDI 68 (220)
T ss_dssp HHHHHHHHHHHHTTCC---CTTTSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcC---CCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcC
Confidence 3556667776655422 223447899999987643 4677654 699999998
No 96
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=56.72 E-value=24 Score=38.78 Aligned_cols=61 Identities=21% Similarity=0.174 Sum_probs=44.9
Q ss_pred EEEEEEEec-cccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE---cCHHHHHHHHHHhc
Q 002985 773 QWFSVVCID-RRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE---GNLESLVNACSSVD 835 (861)
Q Consensus 773 a~I~V~a~D-R~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE---~d~~~L~~l~~~L~ 835 (861)
..+.+.+.+ ++|++++|+.+|++.++||..+...++. ..+.+.|++. .+.++|..-+.++-
T Consensus 102 ~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~--~~~~~~~~v~~~~~~~~~l~~~l~~l~ 166 (415)
T 3p96_A 102 HTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDY--PVIGLELRVSVPPGADEALRTALNRVS 166 (415)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESS--SSEEEEEEEECCTTCHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCC--CceEEEEEeeCCCCCHHHHHHHHHHHh
Confidence 457788899 8999999999999999999999877532 2344555555 45666666555543
No 97
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=50.56 E-value=9.1 Score=34.30 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=28.9
Q ss_pred ecCCCceEecCCCCcHHHHHHhhccccccceEEEEECCEecCCCccCCCCCeEEE
Q 002985 544 FTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEI 598 (861)
Q Consensus 544 ftP~G~i~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~l~~~L~~gd~VeI 598 (861)
+.++|.++-.+-|||- |..|||+.+.-..+|++||+|.|
T Consensus 54 ~~~~~~~~l~Dl~S~n----------------Gt~vng~~i~~~~~L~~Gd~i~~ 92 (106)
T 3gqs_A 54 IGNDNSVLIEDLGSKN----------------GVIVEGRKIEHQSTLSANQVVAL 92 (106)
T ss_dssp ECTTSCEEEEECSCSS----------------CCEETTEECSSEEECCTTCCEEE
T ss_pred ECCCCcEEEEECcCCC----------------CeEECCEECCCCeECCCCCEEEE
Confidence 3456666555555553 66899999887778999999987
No 98
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=49.43 E-value=42 Score=31.21 Aligned_cols=72 Identities=15% Similarity=0.037 Sum_probs=51.6
Q ss_pred EEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHH-HHhccccCeeeeeccccC
Q 002985 773 QWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNAC-SSVDLILGVLGWSTGCSW 849 (861)
Q Consensus 773 a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~-~~L~~I~gV~~Vs~g~~~ 849 (861)
+.+.|....+++.+.++...+++.. .|..+...+ |.+.+.+.|. .|.++|.+++ ++|..++||.++.+-=+.
T Consensus 65 a~v~v~~~~~~~~~~~~~~~l~~~p-~V~~~~~~t----G~~d~~~~v~~~d~~~l~~~l~~~l~~~~gV~~~~t~ivl 138 (150)
T 2pn6_A 65 VITSVKAKYGKNYHVELGNKLAQIP-GVWGVYFVL----GDNDFIVMARYKTREEFMEKFLERVMSIPEVERTSTQVVV 138 (150)
T ss_dssp EEEEEEECCCTTHHHHHHHHHHTST-TEEEEEECS----SSCSEEEEEEESSHHHHHHHTHHHHTTCTTEEEEEEEECS
T ss_pred EEEEEEecCChhHHHHHHHHHhcCc-hhhhhhhhc----CcCCEEEEEEECCHHHHHHHHHHHhccCCCeeEEEEEEEE
Confidence 4455554444788999999998743 456665432 3355666777 7999999999 899999999887754443
No 99
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=49.37 E-value=16 Score=36.66 Aligned_cols=54 Identities=19% Similarity=0.064 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhhcCCCcccCCCccchHHHHHHHHHH----cCCCHHH-HHHHhhcccccc
Q 002985 147 ELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGE----LELDWES-IAAGLLHDTVED 203 (861)
Q Consensus 147 ~~l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa~----l~lD~~t-i~AALLHDvvED 203 (861)
.++.++..+......+.. ..--+.|.+.|+.+... .+.|.+. .+||||||+.-.
T Consensus 5 ~li~~~~~~v~~~~~~~~---~~H~~~H~~rV~~~a~~ia~~~~~d~~~v~~AAlLHDig~~ 63 (209)
T 3b57_A 5 EIILSAKNWMHSHFENET---TGHDWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDYSDI 63 (209)
T ss_dssp HHHHHHHHHHHTTC---------CCHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHTTCCC-
T ss_pred HHHHHHHHHHHHHHhcCC---CCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCcc
Confidence 345666666665544221 11237899999987643 4778764 699999999743
No 100
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=48.46 E-value=16 Score=37.10 Aligned_cols=54 Identities=22% Similarity=0.073 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhhcCCCcccCCCccchHHHHHHHHHH-----cCCCHH-HHHHHhhcccccc
Q 002985 147 ELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGE-----LELDWE-SIAAGLLHDTVED 203 (861)
Q Consensus 147 ~~l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa~-----l~lD~~-ti~AALLHDvvED 203 (861)
.++.++..+......++. ..--+.|.+.|+..... .+.|.+ ..+||||||+...
T Consensus 5 ~li~~~~~~v~~~~~~~~---~~H~~~H~~rV~~~a~~i~a~~~~~d~~~l~lAAlLHDigk~ 64 (225)
T 2qgs_A 5 MKIKKAYEYMKSFHQHDT---TGHDIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVDS 64 (225)
T ss_dssp HHHHHHHHHHHHHTTTCS---SCHHHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHhcCC---CccCHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHcCCCC
Confidence 356667777766554321 11236899999987433 356665 4699999999853
No 101
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=48.31 E-value=17 Score=37.22 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhhcCCCcccCCCccchHHHHHHHHHH----cCCCHHH-HHHHhhccccc
Q 002985 147 ELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGE----LELDWES-IAAGLLHDTVE 202 (861)
Q Consensus 147 ~~l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa~----l~lD~~t-i~AALLHDvvE 202 (861)
..+.++..+......++. ..--+.|.+.|+..... .+.|.+. .+||||||+..
T Consensus 10 ~~i~~~~~~v~~~~~~~~---~~H~~~H~~rV~~~a~~ia~~~~~d~~ll~lAAlLHDigk 67 (231)
T 2pjq_A 10 TQLTAIQTYALQKLAHDH---SGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVID 67 (231)
T ss_dssp HHHHHHHHHHHTSSTTCC---SSCSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccC---CCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCc
Confidence 346667777766554221 11237899999987643 4678775 69999999974
No 102
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=47.14 E-value=12 Score=32.67 Aligned_cols=24 Identities=8% Similarity=0.213 Sum_probs=21.4
Q ss_pred EEECCEecCCCccCCCCCeEEEEe
Q 002985 577 AKVNGNLVSPTHVLANAEVVEIIT 600 (861)
Q Consensus 577 akVng~~v~l~~~L~~gd~VeIit 600 (861)
.+|||+.+..++.|+.||+|+|..
T Consensus 28 V~VNg~~~~~~~~v~~gd~I~v~~ 51 (92)
T 2k6p_A 28 VWLNGSCAKASKEVKAGDTISLHY 51 (92)
T ss_dssp CEETTEECCTTCBCCTTCEEEECC
T ss_pred EEECCEEcCCCCCcCCCCEEEEEe
Confidence 689999998999999999999853
No 103
>1q5y_A NIKR, nickel responsive regulator; nickel binding, regulatory domain, beta sandwich, metal binding protein; 1.40A {Escherichia coli} SCOP: d.58.18.4 PDB: 3bkt_A 3bkf_A 3bku_A
Probab=46.45 E-value=1.4e+02 Score=25.66 Aligned_cols=73 Identities=10% Similarity=0.040 Sum_probs=53.0
Q ss_pred EEEEEEEecc-ccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeeecc
Q 002985 773 QWFSVVCIDR-RGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWSTG 846 (861)
Q Consensus 773 a~I~V~a~DR-~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~gV~~Vs~g 846 (861)
..|.+.-.++ +++-..++.+..+..-.|.+- +...-+.+.....|.|+++.+++..+..+|..++||.-+..-
T Consensus 6 Gvi~ivydh~~~~l~~~l~~iqh~~~d~I~s~-~Hvhld~~~clEvivv~G~~~~I~~l~~~l~~~kGV~~~~L~ 79 (85)
T 1q5y_A 6 AVLSYVYEHEKRDLASRIVSTQHHHHDLSVAT-LHVHINHDDCLEIAVLKGDMGDVQHFADDVIAQRGVRHGHLQ 79 (85)
T ss_dssp EEEEEEEETTCHHHHHHHHHHHHHTGGGEEEE-EEEECSSSEEEEEEEEEEEHHHHHHHHHHHHTSTTCEEEEEE
T ss_pred EEEEEEEeCCchhHHHHHHHHHHhccCeEEEE-EeeeeCCCcEEEEEEEEcCHHHHHHHHHHHhccCCeEEEeEE
Confidence 3466655555 477789999999876555444 222223346667777789999999999999999999887653
No 104
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=45.67 E-value=60 Score=26.10 Aligned_cols=62 Identities=11% Similarity=0.101 Sum_probs=44.9
Q ss_pred ceeeecCCCc--eEecCCCCcHHHHHHhhcccccc--ceEEEEECCEecCCCcc-----CCCCCeEEEEec
Q 002985 540 RVFVFTPRGE--IKNLPKGATVVDYAYMIHTEIGN--KMVAAKVNGNLVSPTHV-----LANAEVVEIITY 601 (861)
Q Consensus 540 ~I~VftP~G~--i~~lp~gaT~lDfAy~iht~ig~--~~~~akVng~~v~l~~~-----L~~gd~VeIit~ 601 (861)
.|+|-+++|+ .++++...|+.|+-..|+...|- .-..-..+|+...-+.. +++|++|.++..
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLA 72 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 4788899987 46788899999998888766543 23444568887654443 579999988753
No 105
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=45.32 E-value=27 Score=30.03 Aligned_cols=64 Identities=14% Similarity=0.092 Sum_probs=45.5
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHH-HHhccccCeeeeec
Q 002985 775 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNAC-SSVDLILGVLGWST 845 (861)
Q Consensus 775 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~-~~L~~I~gV~~Vs~ 845 (861)
+.|.+. ++-+.++.+.|++. =.|..+...+ |.+.+.+.|. .|.++|.+++ ++|..++||.++.+
T Consensus 6 v~v~~~--~~~~~~~~~~l~~~-peV~~~~~vt----G~~D~ll~v~~~d~~~l~~~l~~~l~~~~gV~~~~T 71 (92)
T 2djw_A 6 VLIRPR--GNRVQALGEAIAEL-PQVAEVYSVT----GPYDLVALVRLKDVEELDDVVTQGILSLEGVERTET 71 (92)
T ss_dssp EEEEEC--GGGHHHHHHHHTTS-TTEEEEEEES----SSSSEEEEEEESSGGGHHHHCCCCCTTSTTEEEEEE
T ss_pred EEEEEc--CCCHHHHHHHHhcC-CCeEEEEEee----cCCCEEEEEEECCHHHHHHHHHHhcccCCCEeEEEE
Confidence 444443 34478888888765 3567776542 2345666777 7999999998 68999999988765
No 106
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=45.27 E-value=55 Score=31.30 Aligned_cols=64 Identities=13% Similarity=0.154 Sum_probs=51.9
Q ss_pred ccccHHHHHHHHHHhCCcceeeeEEeEe-cCCcEEEEEEEEE--cCHHHHHHHHHHhccccCeeeee
Q 002985 781 DRRGIMADVTTALATVGVTICSCVAEID-RGRGIAVMLFHVE--GNLESLVNACSSVDLILGVLGWS 844 (861)
Q Consensus 781 DR~GlLadItsvIa~~~iNI~sv~~~~~-~~~~~a~m~ftVE--~d~~~L~~l~~~L~~I~gV~~Vs 844 (861)
+=+++|.+|+.+-.+.|+.+.+++.... .....+.+-++|+ ++.-+|..-++.|.++|-+..|.
T Consensus 43 em~~LL~~i~~~~~~~GL~l~~~~p~~~~~~~~y~e~Pv~i~v~G~Y~~l~~Fl~~l~~LpRiv~~~ 109 (147)
T 2rjz_A 43 EVPGLLEDITRTGLGSGLEFEEIKLLPEVAQQFYIELPIQISVVGGYHDLATFVSGVSSLPRIVTLH 109 (147)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECCCEECSSEEEEEEEEEEEECHHHHHHHHHHHHTSSSCEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeecCccccCcEEEEeEEEEEEEeHHHHHHHHHHHHcCCcEEEEe
Confidence 4468999999999999999999987543 2335666666666 99999999999999999887765
No 107
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=44.78 E-value=12 Score=36.88 Aligned_cols=30 Identities=30% Similarity=0.281 Sum_probs=23.2
Q ss_pred cchHHHHHHHHH----HcCCCHH-HHHHHhhcccc
Q 002985 172 IIHPVEVARILG----ELELDWE-SIAAGLLHDTV 201 (861)
Q Consensus 172 i~Hpl~VA~ILa----~l~lD~~-ti~AALLHDvv 201 (861)
+.|.+.||.+.. .+|+|.+ ..+||||||+=
T Consensus 21 ~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDiG 55 (190)
T 3ccg_A 21 YKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCA 55 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 679999997653 4688765 46899999974
No 108
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=44.51 E-value=12 Score=36.77 Aligned_cols=31 Identities=19% Similarity=0.132 Sum_probs=23.5
Q ss_pred ccchHHHHHHHHH----HcCCCHH-HHHHHhhcccc
Q 002985 171 FIIHPVEVARILG----ELELDWE-SIAAGLLHDTV 201 (861)
Q Consensus 171 Yi~Hpl~VA~ILa----~l~lD~~-ti~AALLHDvv 201 (861)
.+.|.+.||.+.. .+|+|.+ ..+||||||+=
T Consensus 19 ~~~Hs~~Va~~A~~lA~~~g~~~~~~~~agLLHDIG 54 (188)
T 2o08_A 19 RYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYA 54 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3579999987653 4688765 46899999974
No 109
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=42.86 E-value=66 Score=37.66 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=47.2
Q ss_pred EEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhcc
Q 002985 778 VCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDL 836 (861)
Q Consensus 778 ~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~ 836 (861)
...|++|.+++|-+.|++.++||.-+...... .+...+.|+|. .+.+...+++.++..
T Consensus 277 ~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~-~~~~~Isftv~~~~~~~a~~~l~~~~~ 335 (600)
T 3l76_A 277 RVPDRPGVASKLFRDIAQQQVDIDLIIQSIHD-GNSNDIAFTVVKDLLNTAEAVTSAIAP 335 (600)
T ss_dssp EEECSTTHHHHHHHHHHHTTCCCCCEEBCCCB-TTEEEEEEEECGGGHHHHHHHHHHHGG
T ss_pred CCCCcccHHHHHHHHHHHcCCCEEEEEeeccC-CCCceEEEEEeHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999888544322 35678999999 888888888887763
No 110
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=42.54 E-value=14 Score=40.93 Aligned_cols=60 Identities=20% Similarity=0.183 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHhhcCCCcc--cCC---CccchHHHHHHHHH----HcCCCHHH-HHHHhhccccccCC
Q 002985 145 ELELVRRALMLAFEAHDGQKRR--SGE---PFIIHPVEVARILG----ELELDWES-IAAGLLHDTVEDTN 205 (861)
Q Consensus 145 ~~~~l~~A~~~A~~aH~gQ~Rk--sGe---PYi~Hpl~VA~ILa----~l~lD~~t-i~AALLHDvvEDt~ 205 (861)
|.+.|-..-.|=.-.+..|.-- .|. .-+.|.++||.+.. .+|++++. -+||||||+= .++
T Consensus 45 D~~rII~S~~FrRL~~ktQv~~~~~~d~~~tRl~HSl~Va~iar~ia~~l~l~~~l~~~a~LlHDiG-h~P 114 (376)
T 2dqb_A 45 DRDRILHTTAFRRLEYKTQVLPGWAGDYYRTRLTHTLEVAQVSRSIARALGLNEDLTEAIALSHDLG-HPP 114 (376)
T ss_dssp HHHHHHHSHHHHHGGGSCSSSCSCC--CCCCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTT-CCS
T ss_pred HHHHHHCCHHHHHHcCCCccccCCCCcccccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCc
Confidence 3334444444444455666521 222 23589999998753 58888765 5899999985 443
No 111
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=41.70 E-value=14 Score=36.62 Aligned_cols=31 Identities=32% Similarity=0.221 Sum_probs=23.5
Q ss_pred ccchHHHHHHHHH----HcCCCHHH-HHHHhhcccc
Q 002985 171 FIIHPVEVARILG----ELELDWES-IAAGLLHDTV 201 (861)
Q Consensus 171 Yi~Hpl~VA~ILa----~l~lD~~t-i~AALLHDvv 201 (861)
.+.|.+.||.+.. .+|+|.+. .+||||||+=
T Consensus 27 ~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDIG 62 (196)
T 2ogi_A 27 RFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYA 62 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHcC
Confidence 3579999987653 46887654 6899999974
No 112
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=41.34 E-value=76 Score=25.47 Aligned_cols=62 Identities=13% Similarity=0.192 Sum_probs=44.7
Q ss_pred ceeeecCCCce--EecCCCCcHHHHHHhhcccccc--ceEEEEECCEecCCCcc-----CCCCCeEEEEec
Q 002985 540 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGN--KMVAAKVNGNLVSPTHV-----LANAEVVEIITY 601 (861)
Q Consensus 540 ~I~VftP~G~i--~~lp~gaT~lDfAy~iht~ig~--~~~~akVng~~v~l~~~-----L~~gd~VeIit~ 601 (861)
.|+|-+++|+. ++++...|+.|+-..|+...|- .-..-..+|+...-+.. +++|++|.++..
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLR 72 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence 47888888874 6788899999998888765543 33445568877644433 579999998763
No 113
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=38.89 E-value=19 Score=35.40 Aligned_cols=34 Identities=29% Similarity=0.417 Sum_probs=25.7
Q ss_pred CCccchHHHHHHHH---HH------cCCCHH-HHHHHhhccccc
Q 002985 169 EPFIIHPVEVARIL---GE------LELDWE-SIAAGLLHDTVE 202 (861)
Q Consensus 169 ePYi~Hpl~VA~IL---a~------l~lD~~-ti~AALLHDvvE 202 (861)
+.-..|...||.+. +. -+.|.+ .+.+|||||+.|
T Consensus 31 esvaeHs~rVa~~A~~la~~~~~~~~~~d~~~v~~~aLlHD~~E 74 (177)
T 2cqz_A 31 ESIADHSFGVAFITLVLADVLEKRGKRIDVEKALKMAIVHDLAE 74 (177)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHH
Confidence 44567999998775 43 467877 588999999986
No 114
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=38.82 E-value=78 Score=29.55 Aligned_cols=64 Identities=25% Similarity=0.217 Sum_probs=47.6
Q ss_pred ccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeeeccccCCC
Q 002985 783 RGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWSTGCSWPS 851 (861)
Q Consensus 783 ~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~Vs~g~~~~~ 851 (861)
++-+.++...|++.. .|..+...+ |.+.+.+.|. .|.++|.+++++|..++||.++.+-=+...
T Consensus 77 ~~~~~~~~~~l~~~p-~V~~~~~~t----G~~d~~~~v~~~d~~~l~~~~~~l~~~~gV~~~~t~ivl~~ 141 (151)
T 2cyy_A 77 AGKYSEVASNLAKYP-EIVEVYETT----GDYDMVVKIRTKNSEELNNFLDLIGSIPGVEGTHTMIVLKT 141 (151)
T ss_dssp TTCHHHHHHHHHTCT-TEEEEEECS----SSSSEEEEEEESSHHHHHHHHHHHHTSTTEEEEEEEECCCC
T ss_pred cccHHHHHHHHhcCC-CeeEeeEec----CCCCEEEEEEECCHHHHHHHHHHHhCCCCEeEEEEEEEEEE
Confidence 567789999998743 456665432 2345666777 899999999999999999998876555443
No 115
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=38.30 E-value=35 Score=38.60 Aligned_cols=61 Identities=10% Similarity=0.111 Sum_probs=46.3
Q ss_pred eEEEEEEE---eccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHH-HHHHHHHHhcccc
Q 002985 772 IQWFSVVC---IDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLE-SLVNACSSVDLIL 838 (861)
Q Consensus 772 ~a~I~V~a---~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~-~L~~l~~~L~~I~ 838 (861)
.+.|.|.. .+.+|.++.|-++|++.++||..+... ...+.|+|. .+.+ .+..++..++..-
T Consensus 298 ~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~~~------~~~is~~V~~~d~~~~~~~~~~el~~~~ 363 (446)
T 3tvi_A 298 FTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMPSG------VDSVSLVIEDCKLDGKCDKIIEEIKKQC 363 (446)
T ss_dssp EEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBCEE------TTEEEEEEEHHHHTTTHHHHHHHHHHHS
T ss_pred EEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEecC------CCEEEEEEecchHHHHHHHHHHHHHHhc
Confidence 34566664 589999999999999999999887532 135789999 6665 5777888877643
No 116
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=38.14 E-value=70 Score=30.96 Aligned_cols=64 Identities=25% Similarity=0.217 Sum_probs=47.6
Q ss_pred ccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeeeccccCCC
Q 002985 783 RGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWSTGCSWPS 851 (861)
Q Consensus 783 ~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~Vs~g~~~~~ 851 (861)
++-+.++...|++.. .|..|...+ |.+.+.+.|. .|.++|.+++.+|..++||.++.+-=+...
T Consensus 97 ~~~~~~v~~~l~~~p-eV~~~~~vt----G~~d~l~~v~~~d~~~l~~~l~~l~~~~gV~~~~t~ivl~~ 161 (171)
T 2e1c_A 97 AGKYSEVASNLAKYP-EIVEVYETT----GDYDMVVKIRTKNSEELNNFLDLIGSIPGVEGTHTMIVLKT 161 (171)
T ss_dssp TTCHHHHHHHHHTST-TEEEEEECS----SSSSEEEEEEESSHHHHHHHHHHHHHSTTEEEEEEEECSCC
T ss_pred cchHHHHHHHHhcCc-CeEEEEEee----CCCCEEEEEEECCHHHHHHHHHHHhcCCCcceEEEEEEEEE
Confidence 667789999998743 456665432 3345666777 899999999999999999998876555443
No 117
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=37.64 E-value=23 Score=33.41 Aligned_cols=25 Identities=12% Similarity=0.228 Sum_probs=22.2
Q ss_pred EEECCEecCCCccCCCCCeEEEEec
Q 002985 577 AKVNGNLVSPTHVLANAEVVEIITY 601 (861)
Q Consensus 577 akVng~~v~l~~~L~~gd~VeIit~ 601 (861)
++|||+.+..++.|+.||+|+|...
T Consensus 36 V~VNG~~vk~s~~V~~GD~I~I~~~ 60 (133)
T 1dm9_A 36 VHYNGQRSKPSKIVELNATLTLRQG 60 (133)
T ss_dssp EEETTEECCTTCBCCTTCEEEEEET
T ss_pred EEECCEEcCCCCEeCCCCEEEEEeC
Confidence 6799999999999999999999653
No 118
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=37.61 E-value=17 Score=34.96 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.7
Q ss_pred EEEECCEecCCCccCCCCCeEEE
Q 002985 576 AAKVNGNLVSPTHVLANAEVVEI 598 (861)
Q Consensus 576 ~akVng~~v~l~~~L~~gd~VeI 598 (861)
|..|||+.|.-.+.|++||+|.|
T Consensus 111 gt~VNG~~i~~~~~L~~GD~I~~ 133 (154)
T 4ejq_A 111 DTYVNGKKVTEPSILRSGNRIIM 133 (154)
T ss_dssp CEEETTEECCSCEECCTTCEEEE
T ss_pred ceEECCEEcCCceECCCCCEEEE
Confidence 67899999987778999999988
No 119
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=37.23 E-value=53 Score=36.58 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=41.6
Q ss_pred eEEEEEEEe---ccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHH
Q 002985 772 IQWFSVVCI---DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSS 833 (861)
Q Consensus 772 ~a~I~V~a~---DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~ 833 (861)
.+-+.|.+. +.+|+++.+.++|++++|||..+.+. . ..+.|-|. .|.+...+++.+
T Consensus 344 ~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~S--e----~~is~vV~~~d~~~Av~~Lh~ 403 (421)
T 3ab4_A 344 VGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTS--E----IRISVLIREDDLDAAARALHE 403 (421)
T ss_dssp EEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEEEE--T----TEEEEEEEGGGHHHHHHHHHH
T ss_pred eEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEEcC--C----CeEEEEEeHHHHHHHHHHHHH
Confidence 345677664 78999999999999999999977532 1 34677788 777776666554
No 120
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=35.98 E-value=41 Score=33.93 Aligned_cols=56 Identities=25% Similarity=0.251 Sum_probs=41.4
Q ss_pred eEEEEEE---EeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHH
Q 002985 772 IQWFSVV---CIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSS 833 (861)
Q Consensus 772 ~a~I~V~---a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~ 833 (861)
.+.+.|+ ..+.+|+.+.+-++|++++|||.-+++. . ..+.+-|+ .|.+.-.+.+.+
T Consensus 115 iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIstS-E-----i~IS~vV~~~d~~~Av~aLH~ 174 (200)
T 4go7_X 115 IGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTS-E-----IRISVLCRDTELDKAVVALHE 174 (200)
T ss_dssp EEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEEEC-S-----SEEEEEEEGGGHHHHHHHHHH
T ss_pred eeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEEcc-C-----CEEEEEEeHHHHHHHHHHHHH
Confidence 3455554 4678999999999999999999999743 1 34677787 777666666554
No 121
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=35.66 E-value=27 Score=31.98 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.2
Q ss_pred EEEECCEecCCCccCCCCCeEEEEe
Q 002985 576 AAKVNGNLVSPTHVLANAEVVEIIT 600 (861)
Q Consensus 576 ~akVng~~v~l~~~L~~gd~VeIit 600 (861)
|..|||+.+.-.++|++||+|.|=.
T Consensus 81 gt~vNg~~i~~~~~L~~GD~I~iG~ 105 (120)
T 1wln_A 81 ETYVDGQRISETTMLQSGMRLQFGT 105 (120)
T ss_dssp CEEETSCBCSSCEEECTTCEEEETT
T ss_pred CEEECCEEcCCCEECCCCCEEEECC
Confidence 6789999998667899999998843
No 122
>3mgj_A Uncharacterized protein MJ1480; saccharop_DH_N domain, NESG, structural genomics, PSI-2, protein structure initiative; 2.70A {Methanocaldococcus jannaschii}
Probab=35.40 E-value=93 Score=28.96 Aligned_cols=55 Identities=7% Similarity=-0.023 Sum_probs=43.5
Q ss_pred cccHHHHHHHHHHhCCcc--eeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccc
Q 002985 782 RRGIMADVTTALATVGVT--ICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLI 837 (861)
Q Consensus 782 R~GlLadItsvIa~~~iN--I~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I 837 (861)
..|+|..+-..|-+.|.+ |..+++-.. .......++.|. .|.++|.+++.+|.++
T Consensus 14 DSgil~~~LD~I~d~GG~F~I~~f~vG~~-k~d~SyA~l~V~a~d~e~L~~Il~~L~~l 71 (118)
T 3mgj_A 14 DSLILPKVFDKILDMGGDYKVLEFEIGKR-KTDPSYAKILVIGRDERHVDEILNELRDL 71 (118)
T ss_dssp TSSHHHHHHHHHHHTTCEEEEEEEECCSS-TTSCEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhcCCCEEEEEEecCCC-CCCcceEEEEEecCCHHHHHHHHHHHHHc
Confidence 479999999999887654 566666533 345677778888 8999999999999876
No 123
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens} SCOP: a.211.1.1
Probab=35.10 E-value=22 Score=36.19 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=26.0
Q ss_pred CccchHHHHHHHHHHc--CCCHHHHHHHhhccccc
Q 002985 170 PFIIHPVEVARILGEL--ELDWESIAAGLLHDTVE 202 (861)
Q Consensus 170 PYi~Hpl~VA~ILa~l--~lD~~ti~AALLHDvvE 202 (861)
.--.|.+.||.+...+ +.|...+.+||+||..|
T Consensus 55 SVAeHS~~va~ia~~l~~~~~~r~~~~aL~HD~~E 89 (207)
T 2gz4_A 55 TVAQHCLIVETIFCRMCPGATPDEMQMALLHDAPE 89 (207)
T ss_dssp BHHHHHHHHHHHHHHHCTTCCHHHHHHHHTTTTTH
T ss_pred cHHHHHHHHHHHHHHHCCCCCHHHHHHHHhcCchH
Confidence 3447999999876432 56778899999999988
No 124
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=34.17 E-value=1.5e+02 Score=27.47 Aligned_cols=68 Identities=9% Similarity=0.117 Sum_probs=47.9
Q ss_pred EEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHH-HHhccccCeeeeecc
Q 002985 773 QWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNAC-SSVDLILGVLGWSTG 846 (861)
Q Consensus 773 a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~-~~L~~I~gV~~Vs~g 846 (861)
+.+.|.+.. ..-+.++...|++.. .|..|...+ |.+.+.+.|. .|.++|.+++ ..|..++||.++.+-
T Consensus 70 a~v~v~~~~-~~~~~~~~~~l~~~p-eV~~~~~vt----G~~d~~~~v~~~d~~~l~~~l~~~l~~~~gV~~~~t~ 139 (152)
T 2cg4_A 70 CFIGIILKS-AKDYPSALAKLESLD-EVTEAYYTT----GHYSIFIKVMCRSIDALQHVLINKIQTIDEIQSTETL 139 (152)
T ss_dssp EEEEEEESS-GGGHHHHHHHHHTCT-TEEEEEEES----SSCSEEEEEEESCHHHHHHHHHHTTTTSTTEEEEEEE
T ss_pred EEEEEEECC-CCCHHHHHHHHhCCc-CeEEEEEEe----cccCEEEEEEECCHHHHHHHHHHHhhcCCCeeEEEEE
Confidence 344444432 235788999998753 567776542 3456777777 8999999998 699999999887653
No 125
>1zvp_A Hypothetical protein VC0802; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.20A {Vibrio cholerae} SCOP: d.58.18.9 d.58.18.9
Probab=33.12 E-value=90 Score=29.47 Aligned_cols=56 Identities=16% Similarity=0.216 Sum_probs=37.1
Q ss_pred EEEEE---EeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhcccc
Q 002985 774 WFSVV---CIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLIL 838 (861)
Q Consensus 774 ~I~V~---a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~ 838 (861)
.|+|. ..|-.|+++.|++.|+++||.|--+++- +. + ..|.=+ +++.+.+..|+.+.
T Consensus 73 ~i~l~~~~~l~~vGi~a~is~~LA~agIsif~iSty-~t--D---hIlVp~---~~~~~A~~~L~~l~ 131 (133)
T 1zvp_A 73 LITLTVHSSLEAVGLTAAFATKLAEHGISANVIAGY-YH--D---HIFVQK---EKAQQALQALGEFA 131 (133)
T ss_dssp EEEEECCC--CCSCHHHHHHHHHHHTTCCCEEEECS-SC--E---EEEEEG---GGHHHHHHHHTTSC
T ss_pred EEEEeccCCccHHHHHHHHHHHHHhCCCCcEEEEec-cc--c---EEEEeh---hHHHHHHHHHHHHh
Confidence 45554 4899999999999999999999888764 11 1 222222 55666666666553
No 126
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=32.55 E-value=69 Score=36.81 Aligned_cols=69 Identities=10% Similarity=0.250 Sum_probs=48.0
Q ss_pred EEEEEEE---eccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cC-------HHHHHHHHHHhccccCee
Q 002985 773 QWFSVVC---IDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GN-------LESLVNACSSVDLILGVL 841 (861)
Q Consensus 773 a~I~V~a---~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d-------~~~L~~l~~~L~~I~gV~ 841 (861)
+.|.|.. .+++|.+++|-++|++.++||.-+.+. ...+.|+|. .+ .+.|.+++..+..+.. .
T Consensus 342 ~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~ss------e~sis~~v~~~~~~~~~~~~~~l~~~~~el~~~~~-v 414 (510)
T 2cdq_A 342 TMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVATS------EVSISLTLDPSKLWSRELIQQELDHVVEELEKIAV-V 414 (510)
T ss_dssp EEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEEE------TTEEEEEECCGGGSSSCCCHHHHHHHHHHHTTTSE-E
T ss_pred EEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEEeC------CCeEEEEEechHhhhhhHHHHHHHHHHHHhCCCCe-E
Confidence 4456653 568999999999999999999998532 134788888 44 3567788887776432 3
Q ss_pred eeecccc
Q 002985 842 GWSTGCS 848 (861)
Q Consensus 842 ~Vs~g~~ 848 (861)
++..+|+
T Consensus 415 ~~~~~~a 421 (510)
T 2cdq_A 415 NLLKGRA 421 (510)
T ss_dssp EEEEEEE
T ss_pred EEeCCcE
Confidence 3344443
No 127
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=32.50 E-value=1.8e+02 Score=25.03 Aligned_cols=63 Identities=14% Similarity=0.133 Sum_probs=45.3
Q ss_pred ceeeecCCCce--EecCCCCcHHHHHHhhccccc-----cceEEEEECCEecCCCc-----cCCCCCeEEEEecC
Q 002985 540 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIG-----NKMVAAKVNGNLVSPTH-----VLANAEVVEIITYN 602 (861)
Q Consensus 540 ~I~VftP~G~i--~~lp~gaT~lDfAy~iht~ig-----~~~~~akVng~~v~l~~-----~L~~gd~VeIit~~ 602 (861)
.|+|-+++|+. ++++...|+.|+=..|....| -.-..-..+|+...-+. -+++|++|.++-.+
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~ 76 (95)
T 1uel_A 2 QVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 76 (95)
T ss_dssp EEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESS
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeC
Confidence 47788888864 577888999999888877632 33445566888764433 35799999987654
No 128
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=31.71 E-value=1.4e+02 Score=25.15 Aligned_cols=61 Identities=13% Similarity=0.191 Sum_probs=42.0
Q ss_pred ceeeecCCCc-e--EecCCCCcHHHH--HHhhccccccceEEEEECCEecCCCcc-----CCCCCeEEEEe
Q 002985 540 RVFVFTPRGE-I--KNLPKGATVVDY--AYMIHTEIGNKMVAAKVNGNLVSPTHV-----LANAEVVEIIT 600 (861)
Q Consensus 540 ~I~VftP~G~-i--~~lp~gaT~lDf--Ay~iht~ig~~~~~akVng~~v~l~~~-----L~~gd~VeIit 600 (861)
.|.|.+++|+ . +.+.+..+...+ ||+-...+.-.-+.-..+|+.+..+.. +++||+|++.+
T Consensus 9 ~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 79 (79)
T 3a4r_A 9 RLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVWG 79 (79)
T ss_dssp EEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEEC
T ss_pred EEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEeC
Confidence 5778889995 4 445555555554 566555555556677778988887753 69999999864
No 129
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=31.20 E-value=1.2e+02 Score=28.49 Aligned_cols=68 Identities=13% Similarity=0.162 Sum_probs=46.0
Q ss_pred EEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHH-HHhccccCeeeeec
Q 002985 773 QWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNAC-SSVDLILGVLGWST 845 (861)
Q Consensus 773 a~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~-~~L~~I~gV~~Vs~ 845 (861)
+.+.|.+......+.++...|++.. .|..+...+ |.+.+.+.|. .|.++|.+++ ..|..++||.++.+
T Consensus 72 a~v~v~~~~~~~~~~~~~~~l~~~p-eV~~~~~vt----G~~d~~~~v~~~d~~~l~~~l~~~l~~~~gV~~~~t 141 (162)
T 2p5v_A 72 AFIRVSIRKAKDAREDFAASVRKWP-EVLSCFALT----GETDYLLQAFFTDMNAFSHFVLDTLLSHHGVQDAQS 141 (162)
T ss_dssp EEEEEEECSSTTHHHHHHHHHTTCT-TEEEEEEES----SSCSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEE
T ss_pred EEEEEEEcCCchHHHHHHHHHhcCh-hhhEeeeec----CCCCEEEEEEECCHHHHHHHHHHHhhcCCCeeEEEE
Confidence 3344444333256888888887642 456665432 2355666777 8999999998 68999999987654
No 130
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=31.18 E-value=40 Score=31.63 Aligned_cols=25 Identities=8% Similarity=0.182 Sum_probs=21.4
Q ss_pred EEEECCEecCC--CccCCCCCeEEEEe
Q 002985 576 AAKVNGNLVSP--THVLANAEVVEIIT 600 (861)
Q Consensus 576 ~akVng~~v~l--~~~L~~gd~VeIit 600 (861)
|..|||+.+.- ..+|++||+|.|-.
T Consensus 76 GT~vNg~~l~~~~~~~L~~GD~I~lG~ 102 (138)
T 2pie_A 76 GVWLNRARLEPLRVYSIHQGDYIQLGV 102 (138)
T ss_dssp CEEETTEECCTTCCEECCTTCEEEESC
T ss_pred CeEECCEEcCCCCcEECCCCCEEEECC
Confidence 67899999887 46799999999965
No 131
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=31.12 E-value=1.4e+02 Score=26.53 Aligned_cols=64 Identities=13% Similarity=0.154 Sum_probs=42.3
Q ss_pred EEEEEEEec-cccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccc
Q 002985 773 QWFSVVCID-RRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLI 837 (861)
Q Consensus 773 a~I~V~a~D-R~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I 837 (861)
..|...... ...+|++++..+ ...+||...+++.-++.....|.+.+.++.+++.++++-|++-
T Consensus 24 vrL~f~g~~~~~PiIs~l~~~~-~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~ 88 (106)
T 3dhx_A 24 LRLEFTGQSVDAPLLSETARRF-NVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEH 88 (106)
T ss_dssp EEEEEEEECTTCCHHHHHHHHS-CCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHT
T ss_pred EEEEEcCCccChhHHHHHHHHH-CCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 345444433 233555544433 2458999999887665556677777778888999999999865
No 132
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=30.54 E-value=1.4e+02 Score=24.77 Aligned_cols=63 Identities=13% Similarity=0.069 Sum_probs=44.5
Q ss_pred ceeeecCCCce--EecCCCCcHHHHHHhhccc-----cccceEEEEECCEecCCCc-----cCCCCCeEEEEecC
Q 002985 540 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTE-----IGNKMVAAKVNGNLVSPTH-----VLANAEVVEIITYN 602 (861)
Q Consensus 540 ~I~VftP~G~i--~~lp~gaT~lDfAy~iht~-----ig~~~~~akVng~~v~l~~-----~L~~gd~VeIit~~ 602 (861)
.|+|-+++|+. ++++...|+.|+=..|+.. +--.-..-..+|+...-+. -+++|++|.++-.+
T Consensus 7 ~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 7 TITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp EEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred EEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 47788888864 6778899999998888875 2233445556887764333 35799999988754
No 133
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=29.97 E-value=2.7e+02 Score=24.36 Aligned_cols=64 Identities=6% Similarity=0.018 Sum_probs=42.3
Q ss_pred EEEEEeccccHHHHHHHHHH--hCCcceeeeEEeEecCCcEEEEEEEEEc-CHHHHHHHHHHhcccc
Q 002985 775 FSVVCIDRRGIMADVTTALA--TVGVTICSCVAEIDRGRGIAVMLFHVEG-NLESLVNACSSVDLIL 838 (861)
Q Consensus 775 I~V~a~DR~GlLadItsvIa--~~~iNI~sv~~~~~~~~~~a~m~ftVE~-d~~~L~~l~~~L~~I~ 838 (861)
+++.-.....--.-|+.++. ...+||...+++.-++.....|.+.+.+ +.+++.++++.|++-.
T Consensus 23 vrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~~~ 89 (98)
T 3ced_A 23 VRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQ 89 (98)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHTT
T ss_pred EEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHHCC
Confidence 44444444444444555554 3678999999887654445666666666 7889999999998643
No 134
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=28.78 E-value=31 Score=29.85 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=27.7
Q ss_pred eeeecCCC-ceEecCCCCcHHHHHHhhccccccce
Q 002985 541 VFVFTPRG-EIKNLPKGATVVDYAYMIHTEIGNKM 574 (861)
Q Consensus 541 I~VftP~G-~i~~lp~gaT~lDfAy~iht~ig~~~ 574 (861)
|.+.+|+| ..++.|.|.|.+|.|.+.+-.+...|
T Consensus 4 v~~~~~~g~~~~~~~~g~tlL~a~~~~gi~i~~~C 38 (95)
T 1frr_A 4 TVLKTPSGEFTLDVPEGTTILDAAEEAGYDLPFSC 38 (95)
T ss_dssp EEEEETTEEEEEEECTTCCHHHHHHHTTCCCCCSS
T ss_pred EEEEeCCCcEEEEeCCCCcHHHHHHHcCCCCCCCC
Confidence 55556998 88999999999999988776666655
No 135
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=28.60 E-value=33 Score=32.06 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=20.2
Q ss_pred EEEECCEecCCCc--cCCCCCeEEE
Q 002985 576 AAKVNGNLVSPTH--VLANAEVVEI 598 (861)
Q Consensus 576 ~akVng~~v~l~~--~L~~gd~VeI 598 (861)
|..|||+.+.... +|++||+|.|
T Consensus 95 GT~vNg~ri~~~~~~~L~~GD~I~~ 119 (130)
T 4h87_A 95 GTFLNKTRIPPRTYCRVHVGHVVRF 119 (130)
T ss_dssp CEEETTEECCTTCCEECCTTCEEEE
T ss_pred ceEECCEECCCCceeECCCCCEEEE
Confidence 7889999998765 5999999988
No 136
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=28.53 E-value=36 Score=32.23 Aligned_cols=25 Identities=8% Similarity=0.182 Sum_probs=21.3
Q ss_pred EEEECCEecCC--CccCCCCCeEEEEe
Q 002985 576 AAKVNGNLVSP--THVLANAEVVEIIT 600 (861)
Q Consensus 576 ~akVng~~v~l--~~~L~~gd~VeIit 600 (861)
|..|||+.+.. ..+|++||+|.|-.
T Consensus 84 GT~vNg~~i~~~~~~~L~~GD~I~iG~ 110 (145)
T 2csw_A 84 GVWLNRARLEPLRVYSIHQGDYIQLGV 110 (145)
T ss_dssp CEEESSCBCCBTCCEECCSSCCEEESC
T ss_pred CeEECCEECCCCccEECCCCCEEEECC
Confidence 67899999887 46799999999965
No 137
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=28.37 E-value=74 Score=36.04 Aligned_cols=57 Identities=12% Similarity=0.156 Sum_probs=40.9
Q ss_pred eEEEEEEE---eccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHH
Q 002985 772 IQWFSVVC---IDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACS 832 (861)
Q Consensus 772 ~a~I~V~a---~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~ 832 (861)
.+.|.|.. .+++|++++|.++|++.++||..+.-.+. ...+.|+|. .+.+...+.+.
T Consensus 318 ~a~Isv~g~~m~~~~G~~a~if~~La~~~InV~~IsQ~ts----e~~Is~~V~~~d~~~a~~~L~ 378 (473)
T 3c1m_A 318 VALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSS----ETNISLVVSEEDVDKALKALK 378 (473)
T ss_dssp EEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCT----TCCEEEEEEGGGHHHHHHHHH
T ss_pred eEEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEEecCC----CCEEEEEEechHHHHHHHHHH
Confidence 45677774 67889999999999999999988863211 135889999 66554444433
No 138
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=27.31 E-value=1.6e+02 Score=25.33 Aligned_cols=63 Identities=13% Similarity=0.176 Sum_probs=45.9
Q ss_pred ceeeecCCCc--eEecCCCCcHHHHHHhhcccccc--ceEEEEECCEecCCCcc-----CCCCCeEEEEecC
Q 002985 540 RVFVFTPRGE--IKNLPKGATVVDYAYMIHTEIGN--KMVAAKVNGNLVSPTHV-----LANAEVVEIITYN 602 (861)
Q Consensus 540 ~I~VftP~G~--i~~lp~gaT~lDfAy~iht~ig~--~~~~akVng~~v~l~~~-----L~~gd~VeIit~~ 602 (861)
.|+|-+++|+ .++++...|+.|+-..|....|- .-..-..+|+...-+.. +++|++|.++...
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~ 73 (98)
T 1yx5_B 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (98)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 4788899987 46788899999998888765543 23445568887654433 5799999988754
No 139
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=27.16 E-value=1.6e+02 Score=23.88 Aligned_cols=61 Identities=13% Similarity=0.152 Sum_probs=43.8
Q ss_pred ceeeecCCCce---Ee-cCCCCcHHHHHHhhccccccc--eEEEEECCEecCCCcc-----CCCCCeEEEEe
Q 002985 540 RVFVFTPRGEI---KN-LPKGATVVDYAYMIHTEIGNK--MVAAKVNGNLVSPTHV-----LANAEVVEIIT 600 (861)
Q Consensus 540 ~I~VftP~G~i---~~-lp~gaT~lDfAy~iht~ig~~--~~~akVng~~v~l~~~-----L~~gd~VeIit 600 (861)
.|+|-+++|+. ++ ++...|+.|+=..|+...|-. -..-..+|+...-+.. +++|++|.++.
T Consensus 4 ~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~ 75 (78)
T 2faz_A 4 WIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLV 75 (78)
T ss_dssp EEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEE
T ss_pred EEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 47888998864 56 889999999988887766532 3344557876643333 57999998875
No 140
>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A {Coxiella burnetii}
Probab=27.01 E-value=62 Score=33.82 Aligned_cols=63 Identities=5% Similarity=0.025 Sum_probs=49.1
Q ss_pred eccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeeeccc
Q 002985 780 IDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWSTGC 847 (861)
Q Consensus 780 ~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~Vs~g~ 847 (861)
+=.+--+..|.++|.+.|+.+.+..+.-... . .+.|. .+.+.+.+++++|+..++|.+|-.-.
T Consensus 177 ~t~p~~~~~V~~aL~~~g~~~~~aei~~~P~-~----~v~l~~e~~~~~~klid~Led~dDVq~Vy~N~ 240 (247)
T 4f3q_A 177 TTLPEDFEKIRNAMKAADLNPSHAEVTVLAS-T----EVGLDKDSAEQMLRLTEMLEDLDDVQNVYSNA 240 (247)
T ss_dssp EECGGGHHHHHHHHHHTTCCCSEEEEEEEES-S----CEECCHHHHHHHHHHHHHHHTSTTEEEEEECE
T ss_pred EECHHHHHHHHHHHHHcCCCeeEEEEEEecC-C----ccccCHHHHHHHHHHHHHhhcCcCcceeeECC
Confidence 3467789999999999999998876653221 1 34556 78899999999999999999997543
No 141
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=26.95 E-value=30 Score=38.21 Aligned_cols=33 Identities=30% Similarity=0.265 Sum_probs=25.5
Q ss_pred CccchHHHHHHHHH----HcCCCH--HHHHHHhhccccc
Q 002985 170 PFIIHPVEVARILG----ELELDW--ESIAAGLLHDTVE 202 (861)
Q Consensus 170 PYi~Hpl~VA~ILa----~l~lD~--~ti~AALLHDvvE 202 (861)
..+.|.+.|+.+.. .+++|. ...+||||||+=.
T Consensus 50 ~r~~Hsl~V~~~a~~ia~~~~~~~~~~~~~AaLLHDiG~ 88 (371)
T 2hek_A 50 TRFEHSLGVYHITERICESLKVKEKELVKLAGLLHDLGH 88 (371)
T ss_dssp BHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHTTTTTC
T ss_pred ChhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCc
Confidence 45889999998753 467775 4679999999763
No 142
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=26.79 E-value=37 Score=34.17 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=26.0
Q ss_pred CCCccchHHHHHHHH---H-----Hc--CCCHH-HHHHHhhccccc
Q 002985 168 GEPFIIHPVEVARIL---G-----EL--ELDWE-SIAAGLLHDTVE 202 (861)
Q Consensus 168 GePYi~Hpl~VA~IL---a-----~l--~lD~~-ti~AALLHDvvE 202 (861)
++.-..|...||.+. + .+ ++|.+ .+.+|||||+.|
T Consensus 29 ~EnVaeHS~~VA~lA~~la~~~~~~~~~~vD~~~~~~~aLlHDi~E 74 (201)
T 2paq_A 29 TENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASE 74 (201)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTTH
T ss_pred CccHHHHHHHHHHHHHHHHhhhHHhcCcccCHHHHHHHHHhccccc
Confidence 466678999999764 3 22 46765 578899999987
No 143
>2huo_A Inositol oxygenase; protein-substrate complex, HD domain fold, oxidoreductase; HET: INS; 2.00A {Mus musculus} SCOP: a.211.1.4 PDB: 3bxd_A*
Probab=26.77 E-value=54 Score=34.78 Aligned_cols=52 Identities=21% Similarity=0.191 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhcCCCcccCCCccchHHHHHHHHHHcCCCHH-HHHHHhhccc
Q 002985 149 VRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWE-SIAAGLLHDT 200 (861)
Q Consensus 149 l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa~l~lD~~-ti~AALLHDv 200 (861)
|.+|+++-.......-.....|-|.|.++.|+..++-+-+.+ ...+||+||.
T Consensus 77 IweA~e~Ln~LvDeSDPD~dl~qi~H~lQTAEaiR~d~pp~dW~qLtGLiHDL 129 (289)
T 2huo_A 77 IMEAVGMLDDLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDL 129 (289)
T ss_dssp HHHHHHHGGGCCCSSCTTCCSCHHHHHHHHHHHHHHHCTTCHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhcCCcCCccchhHHHHHHHHHHHHHHhCCCcchheeeeecccc
Confidence 445555555554444334567889999999999987677633 4567999986
No 144
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=26.54 E-value=1.9e+02 Score=23.55 Aligned_cols=61 Identities=13% Similarity=0.089 Sum_probs=44.2
Q ss_pred ceeeecCCCce--EecCCCCcHHHHHHhhccccccc--eEEEEECCEecCCCcc-----CCCCCeEEEEe
Q 002985 540 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGNK--MVAAKVNGNLVSPTHV-----LANAEVVEIIT 600 (861)
Q Consensus 540 ~I~VftP~G~i--~~lp~gaT~lDfAy~iht~ig~~--~~~akVng~~v~l~~~-----L~~gd~VeIit 600 (861)
.|+|-+++|+. ++++...|+.|+=..|....|-. -..-..+|+...-+.. +++|++|.++-
T Consensus 6 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~ 75 (79)
T 3phx_B 6 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNL 75 (79)
T ss_dssp EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 58899999975 57788999999988887655532 3344567876655433 57899998875
No 145
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=26.51 E-value=26 Score=30.86 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.3
Q ss_pred EEEECCEecCCCccCCCCCeEEE
Q 002985 576 AAKVNGNLVSPTHVLANAEVVEI 598 (861)
Q Consensus 576 ~akVng~~v~l~~~L~~gd~VeI 598 (861)
|..|||+.+. ..+|++||+|.|
T Consensus 66 Gt~vng~~i~-~~~L~~gd~i~i 87 (100)
T 3po8_A 66 GTTVNNAPVQ-EWQLADGDVIRL 87 (100)
T ss_dssp CCEETTEECS-EEECCTTCEEEE
T ss_pred CEEECCEECc-eEECCCCCEEEE
Confidence 6789999987 678999999987
No 146
>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1
Probab=26.29 E-value=70 Score=33.47 Aligned_cols=66 Identities=9% Similarity=0.063 Sum_probs=51.9
Q ss_pred EeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEE-E-cCHHHHHHHHHHhccccCeeeeeccccC
Q 002985 779 CIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHV-E-GNLESLVNACSSVDLILGVLGWSTGCSW 849 (861)
Q Consensus 779 a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftV-E-~d~~~L~~l~~~L~~I~gV~~Vs~g~~~ 849 (861)
.+=.+.-+..|.++|.+.|+.+.+..+.-... -.+.| . .+.+.+.+++.+|+..++|.+|-.-.-.
T Consensus 173 v~t~p~~~~~V~~aL~~~g~~~~~aei~~~P~-----~~v~l~~~e~~~~~~klid~Led~DDVq~Vy~N~~~ 240 (249)
T 1lfp_A 173 IYTVPEELYEVKENLEKLGVPIEKAQITWKPI-----STVQINDEETAQKVIKLLNALEELDDVQQVIANFEI 240 (249)
T ss_dssp EEECGGGHHHHHHHHHTTTCCCSEEEEEEEES-----SCEECCCHHHHHHHHHHHHHHHTSTTEEEEEECEEC
T ss_pred EEECHHHHHHHHHHHHHcCCCeeeeeeEECCC-----CceecCCHHHHHHHHHHHHHHhcccChhhhhcCCCC
Confidence 34467789999999999999998876653221 23567 5 7899999999999999999999877554
No 147
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=25.82 E-value=1.1e+02 Score=34.46 Aligned_cols=57 Identities=21% Similarity=0.202 Sum_probs=42.0
Q ss_pred eEEEEEEEe---ccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHH
Q 002985 772 IQWFSVVCI---DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACS 832 (861)
Q Consensus 772 ~a~I~V~a~---DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~ 832 (861)
.+-+.|++. +.+|+.+.+.++|++++|||..++-.+. -..+.|-|+ .+.+...+.+.
T Consensus 374 vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgtS----ei~Is~vV~~~d~~~Av~aLH 434 (446)
T 3tvi_A 374 MALVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGSS----EINVIVGVETVDFEKAVKSIY 434 (446)
T ss_dssp EEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECSC----TTEEEEEEEGGGHHHHHHHHH
T ss_pred eEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEecCC----CceEEEEEcHHHHHHHHHHHH
Confidence 456777765 5899999999999999999998863222 244777888 77776665553
No 148
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=25.68 E-value=91 Score=28.41 Aligned_cols=59 Identities=14% Similarity=0.085 Sum_probs=43.3
Q ss_pred ccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHH-HHhccccCeeeeecc
Q 002985 783 RGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNAC-SSVDLILGVLGWSTG 846 (861)
Q Consensus 783 ~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~-~~L~~I~gV~~Vs~g 846 (861)
++-+.++...|++.. .+..+...+ |.+.+.+.|. .|.++|.+++ .+|..++||.++.+-
T Consensus 74 ~~~~~~~~~~l~~~~-~v~~~~~~~----G~~d~~~~v~~~d~~~l~~~~~~~l~~~~gV~~~~t~ 134 (141)
T 1i1g_A 74 PEKLFEVAEKLKEYD-FVKELYLSS----GDHMIMAVIWAKDGEDLAEIISNKIGKIEGVTKVCPA 134 (141)
T ss_dssp GGGHHHHHHHHHHST-TEEEECCCS----SSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEEE
T ss_pred chhHHHHHHHHhcCC-CeEEEEEec----CCCCEEEEEEECCHHHHHHHHHHHhhcCCCEeEEEEE
Confidence 457788999998753 445554321 2344666777 8999999999 899999999988753
No 149
>1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein struc initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8
Probab=25.07 E-value=1e+02 Score=29.20 Aligned_cols=54 Identities=22% Similarity=0.217 Sum_probs=37.1
Q ss_pred EeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhccccCee
Q 002985 779 CIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVL 841 (861)
Q Consensus 779 a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~gV~ 841 (861)
..|-.|+++.|++.||++||.|--+++- +. ...|.=+ +++.+++..|+......
T Consensus 72 ~~~~vGilA~is~pLA~agIsif~iSty-~t-----D~IlVp~---~~~~~Ai~aL~~~~~~~ 125 (134)
T 1zhv_A 72 AFDETGIVLSVISPLSTNGIGIFVVSTF-DG-----DHLLVRS---NDLEKTADLLANAGHSL 125 (134)
T ss_dssp CCSSCCHHHHHHHHHHTTTCCCEEEECS-SC-----EEEEEEG---GGHHHHHHHHHHTTCEE
T ss_pred CccHHHHHHHHHHHHHhCCCCeEEEEec-cc-----cEEEEeH---HHHHHHHHHHHHcCcee
Confidence 4588899999999999999999888764 11 1223333 55666777766654443
No 150
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=24.98 E-value=1.8e+02 Score=23.75 Aligned_cols=62 Identities=13% Similarity=0.145 Sum_probs=44.4
Q ss_pred ceeeecCCCce--EecCCCCcHHHHHHhhccccccc--eEEEEECCEecCCCcc-----CCCCCeEEEEec
Q 002985 540 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGNK--MVAAKVNGNLVSPTHV-----LANAEVVEIITY 601 (861)
Q Consensus 540 ~I~VftP~G~i--~~lp~gaT~lDfAy~iht~ig~~--~~~akVng~~v~l~~~-----L~~gd~VeIit~ 601 (861)
.|+|-+++|+. ++++...|+.|+=..|....|-. -..-..+|+...-+.. +++|++|.++..
T Consensus 5 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r 75 (85)
T 3mtn_B 5 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLR 75 (85)
T ss_dssp EEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECC
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEE
Confidence 57888898875 56788999999988877655432 2344468887665444 588999998764
No 151
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=24.76 E-value=47 Score=38.67 Aligned_cols=55 Identities=16% Similarity=0.282 Sum_probs=38.8
Q ss_pred eecCCCceEecCCCCcHHHHHHhhccccccc------------eE--EEEECCE-ecCC-CccCCCCCeEE
Q 002985 543 VFTPRGEIKNLPKGATVVDYAYMIHTEIGNK------------MV--AAKVNGN-LVSP-THVLANAEVVE 597 (861)
Q Consensus 543 VftP~G~i~~lp~gaT~lDfAy~iht~ig~~------------~~--~akVng~-~v~l-~~~L~~gd~Ve 597 (861)
-|+++|..+++|+|.|.+|+|..++-.+-.. |. .+.|||+ ++.. .+++.+|.+|+
T Consensus 3 ~~~ing~~v~v~~g~tiL~a~~~~gi~ip~lC~~~~~~~~~G~Cg~C~V~v~g~~~~~aC~t~v~~gm~V~ 73 (574)
T 3c8y_A 3 TIIINGVQFNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEVEGTGLVTACDTLIEDGMIIN 73 (574)
T ss_dssp EEEETTEEEEECCCCBHHHHHHHTTCCCCCSSCBTTBCCSSSCCCTTEEEETTTEEEEGGGCBCCTTCEEE
T ss_pred EEEECCEEEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCcccCCCCEEEeCCCcccccCCCCcccceeEE
Confidence 4789999999999999999998875432221 21 2678997 3322 34677887665
No 152
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=24.66 E-value=2.2e+02 Score=24.18 Aligned_cols=63 Identities=13% Similarity=0.159 Sum_probs=45.7
Q ss_pred ceeeecCCCce--EecCCCCcHHHHHHhhccccccc--eEEEEECCEecCCCc-----cCCCCCeEEEEecC
Q 002985 540 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGNK--MVAAKVNGNLVSPTH-----VLANAEVVEIITYN 602 (861)
Q Consensus 540 ~I~VftP~G~i--~~lp~gaT~lDfAy~iht~ig~~--~~~akVng~~v~l~~-----~L~~gd~VeIit~~ 602 (861)
.|+|-+.+|+. ++++...|+.|+=..|+...|-. -..-..+|+...-+. -+++|++|.++...
T Consensus 3 ~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~ 74 (96)
T 3k9o_B 3 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 74 (96)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEc
Confidence 57888898875 56888999999988887665532 234445887765443 36899999998753
No 153
>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} SCOP: e.39.1.1
Probab=24.46 E-value=54 Score=34.15 Aligned_cols=62 Identities=6% Similarity=-0.029 Sum_probs=48.1
Q ss_pred EeccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeeec
Q 002985 779 CIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWST 845 (861)
Q Consensus 779 a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~Vs~ 845 (861)
.+=.+--|..|.++|.+.|+.+.+..+.-... -.+.|. .+.+.+.+++.+|+..++|.+|-.
T Consensus 175 v~t~p~~~~~V~~aL~~~g~~~~~aei~~~P~-----~~v~l~~e~~~~~~klid~Led~DDVq~Vy~ 237 (240)
T 1mw7_A 175 IRGDYNSFKLLNEGFESLKLPILKASLQRIAT-----TPIELNDEQMELTEKLLDRIEDDDDVVALYT 237 (240)
T ss_dssp EEEEGGGHHHHHHHHHHTTCCCSEEEEEEEES-----SCBCCCHHHHHHHHHHHHHHHTSTTEEEEEE
T ss_pred EEECHHHHHHHHHHHHHcCCCeeeeeeEeCCC-----CCcccCHHHHHHHHHHHHHHhcccCcchhhc
Confidence 34457778999999999999998776653221 134556 789999999999999999999864
No 154
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=24.40 E-value=2.2e+02 Score=24.89 Aligned_cols=54 Identities=11% Similarity=0.225 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhcccc
Q 002985 784 GIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLIL 838 (861)
Q Consensus 784 GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~ 838 (861)
.+|++++..+ ...+||..-+++.-++.....|.+.+.++.+++.++++.|+.-.
T Consensus 38 pvis~l~~~~-~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~ 91 (100)
T 2qsw_A 38 PIISHIVQEY-QVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLR 91 (100)
T ss_dssp CHHHHHHHHH-TCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHh-CCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHHHcC
Confidence 3555555544 36789999998876555566777777777888999999998653
No 155
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.37 E-value=1e+02 Score=25.19 Aligned_cols=61 Identities=8% Similarity=0.186 Sum_probs=42.6
Q ss_pred ceeeecCCCce--EecCCCCcHHHHHHhhcccccc--ceEEEEECCEecCCCcc-----CCCCCeEEEEe
Q 002985 540 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGN--KMVAAKVNGNLVSPTHV-----LANAEVVEIIT 600 (861)
Q Consensus 540 ~I~VftP~G~i--~~lp~gaT~lDfAy~iht~ig~--~~~~akVng~~v~l~~~-----L~~gd~VeIit 600 (861)
.|+|-+++|+. ++++...|+.|+-..|+...|- .-..-..+|+...-+.. +++|++|.++-
T Consensus 9 ~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~ 78 (81)
T 2dzi_A 9 QLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVV 78 (81)
T ss_dssp EEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEEC
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 46787888874 6789999999998888766543 23344557876644433 46899888764
No 156
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=23.40 E-value=40 Score=28.47 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=18.7
Q ss_pred EEECCEec-CCCccCCCCCeEEE
Q 002985 577 AKVNGNLV-SPTHVLANAEVVEI 598 (861)
Q Consensus 577 akVng~~v-~l~~~L~~gd~VeI 598 (861)
.+|||+.+ ...+.+..||+|+|
T Consensus 48 V~VNG~~v~~~~~~v~~gd~I~v 70 (79)
T 1p9k_A 48 VKVDGAVETRKRCKIVAGQTVSF 70 (79)
T ss_dssp HEETTBCCCCSSCCCCSSEEEEE
T ss_pred EEECCEEecCCCCCCCCCCEEEE
Confidence 67999987 77888999998876
No 157
>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} SCOP: e.39.1.1
Probab=22.73 E-value=59 Score=34.02 Aligned_cols=63 Identities=13% Similarity=0.022 Sum_probs=49.4
Q ss_pred eccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeeeccc
Q 002985 780 IDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWSTGC 847 (861)
Q Consensus 780 ~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~Vs~g~ 847 (861)
+=.+--+..|.++|.+.|+.+.+..+.-... -.+.|. .+.+.+.+++.+|+..++|.+|-.--
T Consensus 176 ~t~p~~~~~V~~aL~~~g~~~~~aei~~~P~-----~~v~l~~e~~~~~~klid~Led~DDVq~Vy~N~ 239 (249)
T 1kon_A 176 YTAWEEMGKVRDALEAAGLKADSAEVSMIPS-----TKADMDAETAPKLMRLIDMLEDCDDVQEVYHNG 239 (249)
T ss_dssp EEEGGGHHHHHHHHHHTTCCCSEEEEEEEES-----SCCCCCTTTSHHHHHHHHHHHHSSSEEEEEECC
T ss_pred EECHHHHHHHHHHHHHcCCCeeeeeeEECCC-----CceecCHHHHHHHHHHHHHHhcccChhhhhcCC
Confidence 4457778999999999999998776653221 134556 89999999999999999999997653
No 158
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=22.63 E-value=2.3e+02 Score=24.77 Aligned_cols=64 Identities=13% Similarity=0.007 Sum_probs=42.2
Q ss_pred EEEEEeccccHHHHHHHHHHh--CCcceeeeEEeEecCCcEEEEEEEEEcCHHHHHHHHHHhcccc
Q 002985 775 FSVVCIDRRGIMADVTTALAT--VGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLIL 838 (861)
Q Consensus 775 I~V~a~DR~GlLadItsvIa~--~~iNI~sv~~~~~~~~~~a~m~ftVE~d~~~L~~l~~~L~~I~ 838 (861)
+++.......--.-|+.++.+ ..+||..-+++.-++.....|.+.+.++.+++.++++.|++-.
T Consensus 26 v~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~ 91 (101)
T 2qrr_A 26 VRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENN 91 (101)
T ss_dssp EEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHHcC
Confidence 555544444333334444444 5688889988866555566777777777888999999998643
No 159
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=22.59 E-value=50 Score=32.83 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.9
Q ss_pred EEECCEecCCCccCCCCCeEEE
Q 002985 577 AKVNGNLVSPTHVLANAEVVEI 598 (861)
Q Consensus 577 akVng~~v~l~~~L~~gd~VeI 598 (861)
..|||+.|.-.+.|++||.|.|
T Consensus 142 t~VNG~~I~~~~~L~~GDrI~l 163 (184)
T 4egx_A 142 TYVNGKKVTEPSILRSGNRIIM 163 (184)
T ss_dssp EEETTEECCSCEECCTTCEEEE
T ss_pred EEEcCEEccccEEcCCCCEEEE
Confidence 5799999988889999999976
No 160
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=22.51 E-value=59 Score=28.75 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=28.0
Q ss_pred eeeecCCC--ceEecCCCCcHHHHHHhhccc-cccce
Q 002985 541 VFVFTPRG--EIKNLPKGATVVDYAYMIHTE-IGNKM 574 (861)
Q Consensus 541 I~VftP~G--~i~~lp~gaT~lDfAy~iht~-ig~~~ 574 (861)
|.+.+|+| ..+..+.|.|.+|.|.+-+-. +-..|
T Consensus 3 v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C 39 (106)
T 1uwm_A 3 IIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADC 39 (106)
T ss_dssp EEEECTTCCEEEEECCTTSBHHHHHHTTTCTTCCCTT
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCcccCC
Confidence 45558999 899999999999999887776 66666
No 161
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=22.38 E-value=2.8e+02 Score=23.58 Aligned_cols=62 Identities=11% Similarity=-0.030 Sum_probs=44.6
Q ss_pred ceeeecCCCce--EecCCCCcHHHHHHhhccccccceEEEEECCEecCCC-c-----cCCCCCeEEEEecC
Q 002985 540 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPT-H-----VLANAEVVEIITYN 602 (861)
Q Consensus 540 ~I~VftP~G~i--~~lp~gaT~lDfAy~iht~ig~~~~~akVng~~v~l~-~-----~L~~gd~VeIit~~ 602 (861)
.|+|-+.+|+. ++++...|+.|+=..|+... -.-..-..+|+...-+ . -+++|++|.++-..
T Consensus 9 ~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~-~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~ 78 (95)
T 1wia_A 9 NVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ-ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSP 78 (95)
T ss_dssp EEEEEETTTEEEEEEECSSSBHHHHHHHHSSST-TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCC
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC-cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECC
Confidence 46777788864 57888999999998887765 3444445678766444 3 36799999998754
No 162
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=22.35 E-value=35 Score=32.48 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=20.8
Q ss_pred EEEECCEecCC-CccCCCCCeEEEEe
Q 002985 576 AAKVNGNLVSP-THVLANAEVVEIIT 600 (861)
Q Consensus 576 ~akVng~~v~l-~~~L~~gd~VeIit 600 (861)
|..|||+.+.- ..+|++||+|.|-.
T Consensus 88 GT~VNg~~i~~~~~~L~~GD~I~lG~ 113 (151)
T 2jqj_A 88 GTFINGNRLVKKDYILKNGDRIVFGK 113 (151)
T ss_dssp CEEETTEECCSSCEEECSSEEEEETT
T ss_pred CeEECCEEcCCCceECCCCCEEEECC
Confidence 67899999987 47899999998853
No 163
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=22.27 E-value=38 Score=30.65 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=19.3
Q ss_pred EEEECCEecCCCccCCCCCeEEE
Q 002985 576 AAKVNGNLVSPTHVLANAEVVEI 598 (861)
Q Consensus 576 ~akVng~~v~l~~~L~~gd~VeI 598 (861)
|..|||+.+. ..+|++||+|.|
T Consensus 74 Gt~vng~~i~-~~~L~~gd~i~i 95 (115)
T 2xt9_B 74 GTYVNREPVD-SAVLANGDEVQI 95 (115)
T ss_dssp CEEETTEECS-EEEECTTCEEEE
T ss_pred CeEECCEEcc-eEECCCCCEEEE
Confidence 6789999988 678999999987
No 164
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=22.12 E-value=61 Score=31.38 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=20.3
Q ss_pred EEECCEec-CCCccCCCCCeEEEE
Q 002985 577 AKVNGNLV-SPTHVLANAEVVEII 599 (861)
Q Consensus 577 akVng~~v-~l~~~L~~gd~VeIi 599 (861)
.+|||+.+ ..++.++.||+|+|-
T Consensus 78 V~VNG~~v~~ps~~V~~gD~I~V~ 101 (159)
T 1c05_A 78 ILVDGSRVNIPSYRVKPGQTIAVR 101 (159)
T ss_dssp EEETTEECCCSSCBCCTTCEEEEC
T ss_pred EEECCEEeCcCCcEeCCCCEEEEe
Confidence 68999999 589999999998883
No 165
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=22.12 E-value=48 Score=35.58 Aligned_cols=34 Identities=26% Similarity=0.248 Sum_probs=24.6
Q ss_pred cCCCcc-chHHHHHHHHH----HcCCCHH-----HHHHHhhccc
Q 002985 167 SGEPFI-IHPVEVARILG----ELELDWE-----SIAAGLLHDT 200 (861)
Q Consensus 167 sGePYi-~Hpl~VA~ILa----~l~lD~~-----ti~AALLHDv 200 (861)
...||. .|.+.||.+.. .+|++.+ ..+||||||+
T Consensus 162 ~~~~~~~~Hs~~Va~la~~la~~lgl~~~~~~~~l~~aaLLHDI 205 (328)
T 3tm8_A 162 NTDKTISHHGVTVSTLSIALAQKLGITDPKKTQLLTLGALLHDY 205 (328)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTG
T ss_pred hcCchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHhcC
Confidence 445666 69999998653 4688653 4469999997
No 166
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=21.89 E-value=62 Score=28.59 Aligned_cols=35 Identities=14% Similarity=0.095 Sum_probs=28.8
Q ss_pred eeeecCCC--ceEecCCCCcHHHHHHhhccc-cccceE
Q 002985 541 VFVFTPRG--EIKNLPKGATVVDYAYMIHTE-IGNKMV 575 (861)
Q Consensus 541 I~VftP~G--~i~~lp~gaT~lDfAy~iht~-ig~~~~ 575 (861)
|.+.+|+| ..+..+.|.|.+|.|.+-+-. +-..|-
T Consensus 3 V~~~~~~g~~~~~~~~~g~tlLeaa~~~gi~~i~~~C~ 40 (106)
T 1xlq_A 3 VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCG 40 (106)
T ss_dssp EEEECTTSCEEEEECCTTCBHHHHHHHTTCTTSCCTTC
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCCcCCC
Confidence 55558999 889999999999999888777 666663
No 167
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1
Probab=21.86 E-value=59 Score=32.26 Aligned_cols=34 Identities=38% Similarity=0.514 Sum_probs=25.7
Q ss_pred CCccchHHHHHHH---HHH------cCCCHH-HHHHHhhccccc
Q 002985 169 EPFIIHPVEVARI---LGE------LELDWE-SIAAGLLHDTVE 202 (861)
Q Consensus 169 ePYi~Hpl~VA~I---La~------l~lD~~-ti~AALLHDvvE 202 (861)
+.--.|.+.||.+ |+. -++|.+ .+..||+||+.|
T Consensus 36 EsvAeHS~~vA~ia~~la~~~~~~~~~~d~~r~~~~aL~HDl~E 79 (184)
T 1xx7_A 36 ESVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLGE 79 (184)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHcCcHH
Confidence 3445799998875 344 477886 788999999987
No 168
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=21.60 E-value=34 Score=31.99 Aligned_cols=22 Identities=18% Similarity=0.462 Sum_probs=19.4
Q ss_pred EEEECCEecCCCccCCCCCeEEE
Q 002985 576 AAKVNGNLVSPTHVLANAEVVEI 598 (861)
Q Consensus 576 ~akVng~~v~l~~~L~~gd~VeI 598 (861)
|..|||+.+.- .+|++||+|.|
T Consensus 83 GT~vNg~~i~~-~~L~~GD~I~i 104 (131)
T 3hx1_A 83 GLMINGKKVQE-HIIQTGDEIVM 104 (131)
T ss_dssp CEEETTEEESE-EECCTTCEEEC
T ss_pred ceEECCEEeEe-EECCCCCEEEE
Confidence 77899998875 88999999987
No 169
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=21.55 E-value=2.1e+02 Score=23.41 Aligned_cols=62 Identities=15% Similarity=0.152 Sum_probs=43.8
Q ss_pred ceeeecCCCce--EecCCCCcHHHHHHhhcccccc--ceEEEEECCEecCCCcc-----CCCCCeEEEEec
Q 002985 540 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGN--KMVAAKVNGNLVSPTHV-----LANAEVVEIITY 601 (861)
Q Consensus 540 ~I~VftP~G~i--~~lp~gaT~lDfAy~iht~ig~--~~~~akVng~~v~l~~~-----L~~gd~VeIit~ 601 (861)
.|+|-+++|+. ++++...|+.|+=..|....|- .-..-..+|+...-+.. +++|++|.++..
T Consensus 5 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 75 (85)
T 3n3k_B 5 RIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLK 75 (85)
T ss_dssp EEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEEC
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEe
Confidence 57888888864 5688899999998777655442 23444557776654433 688999998864
No 170
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=21.37 E-value=39 Score=32.18 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=20.9
Q ss_pred EEEECCEecCC--CccCCCCCeEEEEe
Q 002985 576 AAKVNGNLVSP--THVLANAEVVEIIT 600 (861)
Q Consensus 576 ~akVng~~v~l--~~~L~~gd~VeIit 600 (861)
|..|||+.+.. .++|++||+|.|-.
T Consensus 104 GT~VNg~~i~~~~~~~L~~GD~I~lG~ 130 (149)
T 1gxc_A 104 GTFVNTELVGKGKRRPLNNNSEIALSL 130 (149)
T ss_dssp CEEETTEECCTTCEEECCTTEEEEESS
T ss_pred CeEECCEECCCCCeEECCCCCEEEECC
Confidence 67899999985 55799999998854
No 171
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=21.30 E-value=2.5e+02 Score=22.41 Aligned_cols=61 Identities=11% Similarity=0.222 Sum_probs=42.3
Q ss_pred ceeeecCCCce--EecCCCCcHHHHHHhhcccccc--ceEEEEECCEecCCCcc-----CCCCCeEEEEec
Q 002985 540 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGN--KMVAAKVNGNLVSPTHV-----LANAEVVEIITY 601 (861)
Q Consensus 540 ~I~VftP~G~i--~~lp~gaT~lDfAy~iht~ig~--~~~~akVng~~v~l~~~-----L~~gd~VeIit~ 601 (861)
.|+|-+ .|+. ++++...|+.|+-..|+...|- .-..-..+|+...-+.. +++|++|.++..
T Consensus 6 ~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 6 NIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 466777 7754 5788899999998888765543 23445567876644433 579999988753
No 172
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=21.14 E-value=72 Score=28.36 Aligned_cols=36 Identities=11% Similarity=0.036 Sum_probs=29.8
Q ss_pred ceeeecCCCc--eEecCCCCcHHHHHHhhccc-cccceE
Q 002985 540 RVFVFTPRGE--IKNLPKGATVVDYAYMIHTE-IGNKMV 575 (861)
Q Consensus 540 ~I~VftP~G~--i~~lp~gaT~lDfAy~iht~-ig~~~~ 575 (861)
.|.+.+|+|. .+..+.|.|.+|.|.+-+-. +-..|-
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~~~gi~~i~~~C~ 40 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALRDAGIDELLALCG 40 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHHHTTCTTCCCTTC
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHHcCCCCCCcCCC
Confidence 4778889997 67889999999999988777 766664
No 173
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=21.03 E-value=46 Score=34.40 Aligned_cols=32 Identities=25% Similarity=0.244 Sum_probs=23.7
Q ss_pred cchHHHHHHHHHHc----CCCHH-HHHHHhhcccccc
Q 002985 172 IIHPVEVARILGEL----ELDWE-SIAAGLLHDTVED 203 (861)
Q Consensus 172 i~Hpl~VA~ILa~l----~lD~~-ti~AALLHDvvED 203 (861)
+.|.+.|+.....+ +.|.+ ..+||||||+.-.
T Consensus 27 ~~H~~rV~~~a~~ia~~~~~d~~~~~~AalLHDig~~ 63 (239)
T 3gw7_A 27 VCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSL 63 (239)
T ss_dssp CCHHHHHHHHHHHHTTTSCSCTTHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 68999999876543 45655 5789999999743
No 174
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=20.71 E-value=64 Score=32.74 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=20.4
Q ss_pred EEECCEecC-CCccCCCCCeEEEE
Q 002985 577 AKVNGNLVS-PTHVLANAEVVEII 599 (861)
Q Consensus 577 akVng~~v~-l~~~L~~gd~VeIi 599 (861)
..|||+.|. .++.++.||+|+|-
T Consensus 126 V~VNG~~v~~ps~~V~~gD~I~V~ 149 (209)
T 2vqe_D 126 ITVNGRRVDLPSYRVRPGDEIAVA 149 (209)
T ss_dssp EEETTEECCCTTCBCCTTCEEEEC
T ss_pred EEECCEEeCcCCcCcCCCCEEEEc
Confidence 689999994 89999999999884
No 175
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=20.69 E-value=86 Score=35.47 Aligned_cols=56 Identities=21% Similarity=0.217 Sum_probs=40.2
Q ss_pred EEEEEEEe---ccccHHHHHHHHHHhCCcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHH
Q 002985 773 QWFSVVCI---DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACS 832 (861)
Q Consensus 773 a~I~V~a~---DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~ 832 (861)
+-+.|++. +++|+++.+.++|++.||||..++-.+ .-..+.|-|. .|.+...+++.
T Consensus 405 a~vsvVG~gm~~~~Gvaak~f~aL~~~~InI~misqgt----Se~~Is~vV~~~d~~~Av~aLh 464 (473)
T 3c1m_A 405 CVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGS----SEVNISFVIDEKDLLNCVRKLH 464 (473)
T ss_dssp EEEEEECTTTTTCTTHHHHHHHHHHHHTCCCCEEEESS----CSSEEEEEEEGGGHHHHHHHHH
T ss_pred EEEEEEecCCCCChhHHHHHHHHHHHCCCCEEEEecCC----CCceEEEEEcHHHHHHHHHHHH
Confidence 44667664 588999999999999999997775221 1245677788 77776666554
No 176
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A
Probab=20.64 E-value=1e+02 Score=30.39 Aligned_cols=34 Identities=29% Similarity=0.217 Sum_probs=25.4
Q ss_pred CCccchHHHHHHH---HHH-cCCCH---H-HHHHHhhccccc
Q 002985 169 EPFIIHPVEVARI---LGE-LELDW---E-SIAAGLLHDTVE 202 (861)
Q Consensus 169 ePYi~Hpl~VA~I---La~-l~lD~---~-ti~AALLHDvvE 202 (861)
+.--.|...||.+ |+. .++|. + .+..||+||+.|
T Consensus 37 EsVAeHS~~vA~iA~~la~~~~vd~~~~~r~~~maL~HDl~E 78 (173)
T 1ynb_A 37 ESVAEHNFRAAIIAFILALKSGESVEKACKAATAALFHDLHE 78 (173)
T ss_dssp CBHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTH
T ss_pred CcHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHcchHH
Confidence 3445799999987 554 47777 4 577899999987
No 177
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=20.56 E-value=1.2e+02 Score=24.74 Aligned_cols=62 Identities=10% Similarity=0.131 Sum_probs=44.5
Q ss_pred ceeeecCCCce--EecCCCCcHHHHHHhhcccccc--ceEEEEECCEecCCCcc-----CCCCCeEEEEec
Q 002985 540 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGN--KMVAAKVNGNLVSPTHV-----LANAEVVEIITY 601 (861)
Q Consensus 540 ~I~VftP~G~i--~~lp~gaT~lDfAy~iht~ig~--~~~~akVng~~v~l~~~-----L~~gd~VeIit~ 601 (861)
.|+|-+++|+. +++....|+.++=..|+...|- .-..-..+|+...-+.. +++||+|.++..
T Consensus 5 ~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~ 75 (79)
T 2uyz_B 5 KLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 75 (79)
T ss_dssp EEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEEC
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEe
Confidence 57888999975 4667788999987777665543 23445568887765544 579999998763
No 178
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=20.41 E-value=60 Score=28.06 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=26.9
Q ss_pred eeeecCCC-ceEecCCCCcHHHHHHhhccccccce
Q 002985 541 VFVFTPRG-EIKNLPKGATVVDYAYMIHTEIGNKM 574 (861)
Q Consensus 541 I~VftP~G-~i~~lp~gaT~lDfAy~iht~ig~~~ 574 (861)
|.+..|+| ..+..+.|.|.+|.|-+.+-.+-..|
T Consensus 3 v~~~~~~g~~~~~~~~g~tlL~a~~~~gi~i~~~C 37 (94)
T 1awd_A 3 VTLKTPSGEETIECPEDTYILDAAEEAGLDLPYSC 37 (94)
T ss_dssp EEEEETTEEEEEECCTTSCHHHHHHHTTCCCCCSS
T ss_pred EEEEeCCCcEEEEECCCCcHHHHHHHcCCCCCcCC
Confidence 55556888 88999999999999988776665554
Done!