Query 002987
Match_columns 860
No_of_seqs 236 out of 827
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 09:08:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002987.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002987hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nut_A Protein transport prote 100.0 9E-130 3E-134 1181.7 66.1 653 146-826 14-733 (769)
2 1m2o_A SEC23, protein transpor 100.0 5E-130 2E-134 1185.2 62.6 652 147-826 6-735 (768)
3 3eh2_A Protein transport prote 100.0 1E-123 4E-128 1125.7 53.6 662 109-809 1-729 (766)
4 3efo_B SEC24 related gene fami 100.0 1E-123 4E-128 1125.8 53.5 664 107-809 3-733 (770)
5 3eh1_A Protein transport prote 100.0 1E-122 3E-127 1114.2 60.8 616 145-809 35-718 (751)
6 1pcx_A Protein transport prote 100.0 1E-118 4E-123 1088.7 61.9 627 140-808 53-762 (810)
7 1m2v_B SEC24, protein transpor 100.0 5E-119 2E-123 1096.2 57.4 628 139-808 168-878 (926)
8 2yrc_A Protein transport prote 99.6 6E-16 2.1E-20 125.7 3.0 50 191-240 5-56 (59)
9 4fx5_A VON willebrand factor t 99.3 8.5E-09 2.9E-13 118.5 36.1 312 275-657 79-409 (464)
10 3ibs_A Conserved hypothetical 98.9 9.3E-08 3.2E-12 97.8 19.3 168 273-513 11-212 (218)
11 1ijb_A VON willebrand factor; 98.5 2.8E-06 9.4E-11 86.3 18.8 162 274-504 14-183 (202)
12 4b4t_W RPN10, 26S proteasome r 98.5 6.9E-07 2.4E-11 94.8 12.8 148 275-494 5-163 (268)
13 1v7p_C Integrin alpha-2; snake 98.4 3E-06 1E-10 85.7 15.9 171 274-512 7-193 (200)
14 1q0p_A Complement factor B; VO 98.4 7.4E-06 2.5E-10 83.6 18.0 177 274-503 16-206 (223)
15 1shu_X Anthrax toxin receptor 98.4 9.7E-06 3.3E-10 80.1 17.3 159 273-504 6-169 (182)
16 1atz_A VON willebrand factor; 98.4 1.2E-05 4E-10 80.5 18.0 159 274-504 6-172 (189)
17 1n3y_A Integrin alpha-X; alpha 98.4 5.3E-06 1.8E-10 83.3 15.2 163 274-504 10-181 (198)
18 2odp_A Complement C2; C3/C5 co 98.3 8E-06 2.7E-10 94.5 17.7 188 274-513 10-209 (509)
19 4hqf_A Thrombospondin-related 98.3 1.2E-05 4.3E-10 85.8 17.6 165 274-504 22-197 (281)
20 1mf7_A Integrin alpha M; cell 98.3 3.7E-06 1.3E-10 84.4 12.7 173 274-514 6-189 (194)
21 2b2x_A Integrin alpha-1; compu 98.3 5.3E-06 1.8E-10 85.4 13.1 164 274-504 23-199 (223)
22 3n2n_F Anthrax toxin receptor 98.3 1.7E-05 5.9E-10 78.5 16.3 161 275-504 9-172 (185)
23 4hqo_A Sporozoite surface prot 98.3 1.2E-05 4E-10 85.4 15.9 165 274-504 19-194 (266)
24 1rrk_A Complement factor B; BB 98.3 1.4E-05 4.8E-10 92.1 17.5 177 275-504 3-193 (497)
25 1pt6_A Integrin alpha-1; cell 98.3 4.7E-06 1.6E-10 85.1 12.0 173 274-514 8-196 (213)
26 2x5n_A SPRPN10, 26S proteasome 98.2 1E-05 3.5E-10 81.9 13.0 155 275-502 4-173 (192)
27 1mjn_A Integrin alpha-L; rossm 98.2 1.7E-05 5.9E-10 78.8 14.3 156 275-504 4-167 (179)
28 2x31_A Magnesium-chelatase 60 98.2 2.3E-07 8E-12 92.8 -0.2 166 273-503 5-175 (189)
29 3hrz_D Complement factor B; se 98.0 2.8E-05 9.6E-10 94.1 14.9 182 275-504 245-435 (741)
30 3zqk_A VON willebrand factor; 98.0 5.4E-05 1.8E-09 76.5 14.6 153 274-504 22-181 (199)
31 2xgg_A Microneme protein 2; A/ 97.9 0.0002 6.9E-09 70.8 14.9 145 274-485 18-168 (178)
32 3k6s_A Integrin alpha-X; cell 97.6 0.00013 4.5E-09 91.9 10.2 163 275-504 132-302 (1095)
33 1jey_B KU80; double-strand DNA 97.5 5.7E-05 1.9E-09 88.9 5.9 196 274-527 8-254 (565)
34 1kcq_A Gelsolin, brevin, ADF, 97.3 0.00079 2.7E-08 61.1 9.5 77 726-808 2-81 (104)
35 1svq_A Severin; actin-binding; 96.9 0.002 6.9E-08 59.4 7.5 77 726-808 12-90 (114)
36 3fg7_A Villin-1; actin binding 96.0 0.009 3.1E-07 66.9 7.3 83 725-809 281-367 (398)
37 2fh1_A Gelsolin; calcium, cont 96.0 0.0066 2.3E-07 66.8 6.0 83 725-809 227-314 (344)
38 1j72_A Macrophage capping prot 95.7 0.021 7.2E-07 62.7 8.6 79 725-809 246-335 (347)
39 3rag_A Uncharacterized protein 95.4 0.02 7E-07 59.4 6.7 45 273-317 134-182 (242)
40 3fg6_A Adseverin, scinderin; C 95.4 0.0094 3.2E-07 66.2 4.5 48 725-772 268-320 (371)
41 1jey_A KU70; double-strand DNA 95.4 0.3 1E-05 57.7 17.5 160 275-478 37-208 (609)
42 2ww8_A RRGA, cell WALL surface 94.5 0.073 2.5E-06 65.5 9.2 150 274-433 225-394 (893)
43 1d0n_A Horse plasma gelsolin; 94.4 0.036 1.2E-06 66.9 6.0 85 723-809 610-699 (729)
44 1j72_A Macrophage capping prot 93.9 0.14 4.8E-06 56.2 9.2 78 726-809 135-215 (347)
45 1yvr_A RO autoantigen, 60-kDa 92.8 0.18 6E-06 58.7 8.0 102 273-432 368-475 (538)
46 1d0n_A Horse plasma gelsolin; 91.4 0.39 1.3E-05 57.9 9.0 79 725-809 132-213 (729)
47 2fh1_A Gelsolin; calcium, cont 90.0 0.45 1.5E-05 52.1 7.1 72 726-809 124-199 (344)
48 3fg6_A Adseverin, scinderin; C 89.3 0.67 2.3E-05 51.2 7.9 72 726-809 165-241 (371)
49 3fcs_B Integrin beta-3; beta p 86.6 3.5 0.00012 49.2 12.3 229 276-535 114-369 (690)
50 3t3p_B Integrin beta-3; integr 85.4 54 0.0019 37.1 22.1 220 276-535 114-369 (472)
51 3rag_A Uncharacterized protein 81.4 3 0.0001 43.1 7.6 63 418-501 10-76 (242)
52 2nvo_A RO sixty-related protei 81.0 2.9 9.9E-05 48.4 8.2 32 386-432 440-471 (535)
53 3fg7_A Villin-1; actin binding 76.9 0.49 1.7E-05 52.8 0.0 49 726-774 178-230 (398)
54 2j9u_B VPS36, vacuolar protein 71.0 1 3.4E-05 37.8 0.4 21 215-235 15-35 (76)
55 1gh9_A 8.3 kDa protein (gene M 65.8 1.8 6.2E-05 36.1 1.0 32 193-230 2-33 (71)
56 2iue_A Pactolus I-domain; memb 59.6 9.4 0.00032 38.6 5.1 42 276-317 6-51 (212)
57 2gmg_A Hypothetical protein PF 58.3 2.7 9.2E-05 37.6 0.7 36 194-234 66-101 (105)
58 2a20_A Regulating synaptic mem 56.1 2.5 8.5E-05 33.7 0.1 29 194-226 32-60 (62)
59 1pft_A TFIIB, PFTFIIBN; N-term 54.7 21 0.00072 27.1 5.3 29 195-226 5-33 (50)
60 1vq8_Z 50S ribosomal protein L 53.7 8.3 0.00028 33.1 3.0 31 194-228 26-56 (83)
61 2csz_A Synaptotagmin-like prot 36.4 12 0.0004 31.6 1.2 31 196-226 43-73 (76)
62 2avu_E Flagellar transcription 35.3 8.2 0.00028 38.4 0.1 28 194-224 133-161 (192)
63 4gat_A Nitrogen regulatory pro 35.1 11 0.00038 30.9 0.8 33 193-226 7-39 (66)
64 2vut_I AREA, nitrogen regulato 30.1 14 0.00048 27.6 0.6 31 195-226 1-31 (43)
65 2zet_C Melanophilin; complex, 28.7 12 0.0004 35.9 -0.0 33 196-228 86-119 (153)
66 1yuz_A Nigerythrin; rubrythrin 27.6 15 0.00052 36.7 0.6 26 194-226 170-195 (202)
67 1x0t_A Ribonuclease P protein 27.5 27 0.00091 32.0 2.1 35 196-230 66-107 (120)
68 6rxn_A Rubredoxin; electron tr 27.2 10 0.00035 28.8 -0.6 9 217-225 30-38 (46)
69 1s24_A Rubredoxin 2; electron 25.6 10 0.00035 32.8 -1.0 32 194-225 34-76 (87)
70 1zbd_B Rabphilin-3A; G protein 25.4 23 0.0008 33.1 1.4 33 196-228 73-109 (134)
71 3v4v_B Integrin beta-7; cell a 24.5 56 0.0019 37.2 4.5 219 276-535 135-388 (503)
72 3vi3_B Integrin beta-1; beta p 23.2 69 0.0024 36.0 4.9 188 276-494 125-334 (454)
73 2hgo_A CASSIICOLIN; toxin, dis 21.8 49 0.0017 21.4 1.9 26 197-223 2-27 (27)
74 3j21_g 50S ribosomal protein L 21.3 23 0.00079 27.5 0.4 28 193-228 12-39 (51)
75 1yk4_A Rubredoxin, RD; electro 21.2 16 0.00053 28.5 -0.6 9 217-225 35-43 (52)
76 3k6s_B Integrin beta-2; cell r 21.0 39 0.0013 40.1 2.4 41 276-316 107-151 (687)
No 1
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=100.00 E-value=9.4e-130 Score=1181.67 Aligned_cols=653 Identities=25% Similarity=0.365 Sum_probs=581.1
Q ss_pred CCCCCCeeeeecCccCCCHhhhhcCCCceEEEEccCCCCCCCCcccCCCCcccCC--CccccccceEEEcCCCEEEEccC
Q 002987 146 PVGESSCVLFSAHKVLKKKKQANVPSLGFGALVSPGKEVSPSLQIIQRDPHRCHN--CGAFANIYCKILLGSGQWQCVIC 223 (860)
Q Consensus 146 ~~~~~~~vR~T~~~iP~t~~~~~~~~lP~g~vv~P~~~~~~~~p~v~~~pvRC~~--C~AYiNPf~~~~~~~~~W~C~~C 223 (860)
.||+++|||+|||+||.+++++++++|||||+|+||++. +++|+++++|+||++ |+|||||||+|+.++++|+||||
T Consensus 14 ~n~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~-~~~p~v~~~pvRC~~~~CrayiNPf~~~~~~~~~W~C~~C 92 (769)
T 2nut_A 14 QNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKER-PDLPPIQYEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFC 92 (769)
T ss_dssp HHHHHHSEEESBSSBCSSHHHHTTCSSCCEEEECTTCCC-SCCCCBCSCCCBCSSTTCCCBCCTTSEEETTTTEEECSSS
T ss_pred ccCCCCcccceeccCCCChHHHhcccCCeEEEEeeCCCC-CCCCcCCCCCCcCCCCCCCeEECCceEEeCCCCEEEccCC
Confidence 578999999999999999999999999999999999986 348899999999999 99999999999999999999999
Q ss_pred CCcCCCCccccCCCccccCCCCCc--CCCceeEEecCCCCCCCCCCCCCCCCCcEEEEEECCCChhHHHHHHHHHHHhhh
Q 002987 224 RNLNGSEGEYVAPSKEELRNFPEL--SSPMVDYVQTGNNRSSYVPVSDSRMSAPIILVIDECLDEPHLQHLQSSLHAFVE 301 (860)
Q Consensus 224 ~~~N~lp~~Y~~~~~~d~~~~PEL--~~~tvEy~~p~~yr~~~~~~~~~~~~p~~vFvID~S~~~~~l~~l~~sL~~~L~ 301 (860)
++.|++|++|+.... .+.+||| +++||||+++.+| +.+|.|+||||+|.++++++++|++|+++|+
T Consensus 93 ~~~N~~P~~Y~~~~~--~~~~pEL~p~~~tvEy~~~~~~----------p~pp~~vFvIDvS~~a~~l~~l~~si~~~L~ 160 (769)
T 2nut_A 93 YQRNQFPPSYAGISE--LNQPAELLPQFSSIEYVVLRGP----------QMPLIFLYVVDTCMEDEDLQALKESMQMSLS 160 (769)
T ss_dssp CCEEECCGGGTTCBT--TBCCGGGSGGGSSEEEEECSSC----------CCCCEEEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCChHHccCCc--ccCChhhcCCCCcEEEEccCCC----------CCCCEEEEEEECCccHHHHHHHHHHHHHHHH
Confidence 999999999984332 3457899 8999999999875 2568899999999999999999999999999
Q ss_pred cCCCCcEEEEEEECCeEEEEecCCCCceeeecccCCCCCCHHHHHHHhh-------------------cCCccccchhhh
Q 002987 302 SIPPTARIGIILYGRTVSVYDFSEDSIASSDVLAGDKLPTEDSLKALLY-------------------GTGVYLSPMHAS 362 (860)
Q Consensus 302 ~Lp~~~~VGlITFd~~V~vy~l~~~~~~~~~V~~g~~~p~~~~l~~l~~-------------------~~~~fL~pl~e~ 362 (860)
.||++++|||||||++||||+++.+.+.+++||+|+++++.+++++|++ ..++||+|++||
T Consensus 161 ~Lp~~~~VGlITf~~~v~~y~l~~~~~~~~~vf~G~k~~~~~q~~~ml~v~d~~~~~~~~~~~~~f~~p~~~~lv~~~e~ 240 (769)
T 2nut_A 161 LLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKI 240 (769)
T ss_dssp TSCTTCEEEEEEESSEEEEEESSCCSSCEEEEEETTSCCCSHHHHHHHC-------------------CCCSSSEEHHHH
T ss_pred hCCCCceEEEEEeCCEEEEEeCCCCCCccceeecCCccccHHHHHHHhCCCCcccccccccccccCCCcccceeeeHHHH
Confidence 9999999999999999999999999899999999999999888776552 126799999999
Q ss_pred HHHHHHHHhhhccCccccccCCCC-CchHHHHHHHHHHhcCCCcccccccccCCCCCcEEEEEeCCCCCCCCCCccCCCC
Q 002987 363 KQVAHDIFSSLRPYKLNITEASRD-RCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGGPNTYGPGSVPHSFS 441 (860)
Q Consensus 363 ~~~i~~lL~~L~~~~~~~~~~~r~-r~~G~AL~~A~~lL~~~~~~~~~~~~k~~~~ggrIivF~sGppt~GpG~l~~~~~ 441 (860)
++.|+++|++|+++.|.....+++ ||+|+||++|..+|+..++ +.||||++|++|+||.|||+|+.++.
T Consensus 241 ~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~~----------~~GGrI~~F~sg~pt~GpG~l~~r~~ 310 (769)
T 2nut_A 241 DMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFP----------NTGARIMMFIGGPATQGPGMVVGDEL 310 (769)
T ss_dssp HHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHSC----------SSCCEEEEEESSCCCSSSSCCSCSBT
T ss_pred HHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhccc----------CCCcEEEEEeCCCCCCCCCCCcCccc
Confidence 999999999999976755545565 9999999999999995322 26899999999999999999999875
Q ss_pred CCC-----------chhhhHhHHHHHHHHHHHHHhCCcEEEEEeecCCCCCcccchhhhcccccEEEEeCCchh-HHHHH
Q 002987 442 HPN-----------YLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKASGGVLVLHDDFGE-AFGVN 509 (860)
Q Consensus 442 ~~~-----------~~~~ek~a~~fY~~La~~~~~~gisVDiF~~~~~~v~la~l~~L~~~TGG~v~~y~~f~~-~f~~d 509 (860)
++. .+++ +++.+||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+. .|.++
T Consensus 311 ~~~~rs~~d~~ke~~~~~-~~a~~fY~~la~~~~~~gi~VDlF~~~~~~vdla~l~~l~~~TGG~~~~~~~F~~~~~~~~ 389 (769)
T 2nut_A 311 KTPIRSWHDIDKDNAKYV-KKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQT 389 (769)
T ss_dssp TSCCCCHHHHHTTCCTTH-HHHHHHHHHHHHHHHHHTCEEEEEEECSSCCCHHHHTHHHHHSSCCEEEESCSSSHHHHHH
T ss_pred ccccccccccccchhhhc-cchHHHHHHHHHHHHHCCeEEEEEeccCCccChHHHHHHhhcCCceEEEcCCCchhhHHHH
Confidence 433 2223 7899999999999999999999999999999999999999999999999999985 69999
Q ss_pred HHHHHhc------ccccceEEEEEecCCeeEEEeeCCCccccccccc----ccccCcccceeccCCCCceEEEEEEEecc
Q 002987 510 LQRASTR------AAGSHGFLEIRCSDDILVTQIVGPGEEAHIDTHE----TFKNDAALSIQMPSVEETQSFAVSMENKR 579 (860)
Q Consensus 510 L~r~l~r------~~g~~a~lrVR~S~gi~v~~~~G~~~s~~~~~~~----~~~~~~~~~i~l~~v~~~~S~~~~~~~~~ 579 (860)
|+|.|++ ++||+|+||||||+||+|+++|||+.+.++++++ -++.++.+.|++++++++++|+|+|++++
T Consensus 390 l~~~~~~~~~~~l~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~vsd~~~g~~~t~~~~l~~~~~d~s~~v~f~~~~ 469 (769)
T 2nut_A 390 FQRVFTKDMHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVN 469 (769)
T ss_dssp HHHTTCBCTTSCBSCEEEEEEEEEECTTEEEEEEESSCEECCCCCTTBCSSCCSBCSCSEEEEEEECTTCCEEEEEEEC-
T ss_pred HHHHHhhhcccccceEEEEEEEEEecCCeEEEeeeccccccccccCccccceeccCCCceEEeecCCCCCEEEEEEEecC
Confidence 9999998 6899999999999999999999999987766543 13455667899999999999999999998
Q ss_pred CC-----CCCceEEEEEEEEEecCCcEEEEEEEeeecccCch---HHHHhhcCHHHHHHHHHHHHHHHHhccCCHHHHHH
Q 002987 580 DI-----ESNHVFFQFAIRYSNVYQADISRVVTVRLPTVDSV---SAYLSSFQDEVAAVLIAKRTLLRAKIFSEAIDMRT 651 (860)
Q Consensus 580 ~~-----~~~~~~iQ~al~YT~~~G~RriRV~T~~l~vt~~~---~~v~~s~D~ea~~~llaK~av~~~~~~~~~~d~r~ 651 (860)
.. ....+|||||++||+.+|+|||||||++++|+++. .++|+++|+||++++|||+|++++++ ++..|+|+
T Consensus 470 ~~~~~l~~~~~~~~Q~a~lYt~~~G~rRiRV~T~~~~~t~~~~~~~~v~~~~Dqea~~~llar~a~~~~~~-~~~~d~~~ 548 (769)
T 2nut_A 470 QHNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAET-EEGPDVLR 548 (769)
T ss_dssp ---------CCEEEEEEEEEEETTSCEEEEEEEEEECBCCGGGHHHHHHHTBCHHHHHHHHHHHHHHHHTT-C---CHHH
T ss_pred ccccccCCCCeEEEEEEEEEECCCCCEEEEEEeecccccCCcccHHHHHHhcCHHHHHHHHHHHHHHHhcc-CCHHHHHH
Confidence 63 35789999999999999999999999999999987 59999999999999999999999988 47899999
Q ss_pred HHHHHHHHHHHHhcccCCCC--CccccchhhhHHHHHHHHHccCcCCCCCCCCchHHHHHHHHHhccCHHHHHHhhcccc
Q 002987 652 MIDERVKDIALKFGSQVPKS--KLYRFPKELSALSELLFHLRRSPLLGNIIGHDDERSVLRNLFLNASFDLSLRMVAPRC 729 (860)
Q Consensus 652 ~Ld~~li~il~~y~~~~~~~--~~l~Lp~~l~~lP~~~~~L~RS~~L~~~~~spDer~~~~~~l~~~~v~~~l~~iyP~L 729 (860)
||+++|++++.+|+.| +|. ++|+||++|++||+|||||+||++|+++++++|||+|+|++++++++.+++.||||+|
T Consensus 549 ~ld~~li~l~~~~~~Y-rk~~~~sl~lp~~lkllP~~~~~L~ks~~l~~~~~spDer~~~~~~l~~~~~~~~~~~iyP~L 627 (769)
T 2nut_A 549 WLDRQLIRLCQKFGEY-HKDDPSSFRFSETFSLYPQFMFHLRRSSFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPIL 627 (769)
T ss_dssp HHHHHHHHHHHHHCBC-CTTCGGGCBCCTTTTTHHHHHHHHHHSTTTCCTTSCHHHHHHHHHHHTTCCHHHHHHHHSCEE
T ss_pred HHHHHHHHHHHHHHHH-hCcCcccccccHHHHHHHHHHHHHhcccccCCCCCCccHHHHHHHHHHcCCHHHHHHhhcCEE
Confidence 9999999999998877 443 3599999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCccccCCccccccCCCcEEEEeCCcEEEEEeCCcccC--------Cccc--hHHHHHHHHHHHHHHHhccCCCc
Q 002987 730 LMYREGGTFEELPAYDLAMQSDKAVVLDHGTDVFIWLGAELAA--------DEGR--SAAALAACRTLAEELSEFRFPAP 799 (860)
Q Consensus 730 ~~~~~~~~~~~lP~~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~--------~~~~--~~~~l~~~~~~a~~l~~~R~p~P 799 (860)
|+||+.+...+++++..+|++|||||||+|++|+||+|+++++ +++| +++++++++++|++|+++|||+|
T Consensus 628 ~~~~~~~~P~~v~ls~~~l~~~gi~LLD~g~~i~i~~G~~v~~w~~~~~~~~p~~~~~~~~l~~p~~~a~~i~~~R~p~P 707 (769)
T 2nut_A 628 YAYSFSGPPEPVLLDSSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRFPMP 707 (769)
T ss_dssp EEECSSSSCEECCSSGGGCCTTCEEEEECSSEEEEEECHHHHHHHHHTTTTSGGGHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred EeccCCCCCCceeCCHHHccCCCEEEEECCCEEEEEECCcchHHHhCCCCCCchhhhHHHHHHhHHHHHHHHHhcCCCCC
Confidence 9999877655667778899999999999999999999999875 3455 58999999999999999999999
Q ss_pred EEEEEecCCC-CcceeeeecCCCCCCCc
Q 002987 800 RILAFKVLFC-SIPLPCIVLSFYSTWQP 826 (860)
Q Consensus 800 r~i~~~qg~s-~r~lp~~lvp~~~~~~~ 826 (860)
||++|+||+| +|||.+||+|.. .|.
T Consensus 708 r~i~~~~g~sqaRfl~sklnps~--~~~ 733 (769)
T 2nut_A 708 RYIDTEHGGSQARFLLSKVNPSQ--THN 733 (769)
T ss_dssp EEEEEETTCSTTHHHHHHCC--------
T ss_pred eEEEEcCCCcHHHHHHHhcCCcc--ccc
Confidence 9999999988 999999999988 553
No 2
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=100.00 E-value=4.9e-130 Score=1185.22 Aligned_cols=652 Identities=23% Similarity=0.354 Sum_probs=584.4
Q ss_pred CCCCCeeeeecCccCCCHhhhhcCCCceEEEEccCCCCCCCCcccCCCCcccCC--CccccccceEEEcCCCEEEEccCC
Q 002987 147 VGESSCVLFSAHKVLKKKKQANVPSLGFGALVSPGKEVSPSLQIIQRDPHRCHN--CGAFANIYCKILLGSGQWQCVICR 224 (860)
Q Consensus 147 ~~~~~~vR~T~~~iP~t~~~~~~~~lP~g~vv~P~~~~~~~~p~v~~~pvRC~~--C~AYiNPf~~~~~~~~~W~C~~C~ 224 (860)
+|+++|||+|||+||.+++++++++|||||+|+||++. +++|+++++|+||++ |+|||||||+|+.++++|+||||+
T Consensus 6 ~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~-~~~p~v~~~pvRC~~~~CrayiNPf~~~~~~~~~W~C~~C~ 84 (768)
T 1m2o_A 6 NEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEY-DELNVAPYNPVVCSGPHCKSILNPYCVIDPRNSSWSCPICN 84 (768)
T ss_dssp HHHHHSEEESBSEEESSHHHHHHTCSCSEEEECTTCCC-TTCCEECSCCCBCCSTTTCCBCCTTSCEETTTTEECCTTTC
T ss_pred ccCcCceEeeeccCCCCHHHHhcCCCCeEEEEEeCCCC-CCCCcCCCCCCccCCCCCCeEECCceEEeCCCCEEEcccCC
Confidence 68899999999999999999999999999999999975 358889999999999 999999999999999999999999
Q ss_pred CcCCCCccccCCCccccCCCCCcCCCceeEEecCCCCCCCCCCCCCCCCCcEEEEEECCCChhHHHHHHHHHHHhhhcCC
Q 002987 225 NLNGSEGEYVAPSKEELRNFPELSSPMVDYVQTGNNRSSYVPVSDSRMSAPIILVIDECLDEPHLQHLQSSLHAFVESIP 304 (860)
Q Consensus 225 ~~N~lp~~Y~~~~~~d~~~~PEL~~~tvEy~~p~~yr~~~~~~~~~~~~p~~vFvID~S~~~~~l~~l~~sL~~~L~~Lp 304 (860)
+.|++|++|+.... .+.+|||+++||||+++.. + +.+|.|+||||+|.++++++.+|++|+++|+.||
T Consensus 85 ~~N~~P~~y~~~~~--~~~~pEL~~~tvEy~~p~~--~--------~~pp~~vFvIDvs~~~~~l~~l~~sl~~~L~~Lp 152 (768)
T 1m2o_A 85 SRNHLPPQYTNLSQ--ENMPLELQSTTIEYITNKP--V--------TVPPIFFFVVDLTSETENLDSLKESIITSLSLLP 152 (768)
T ss_dssp CCCBCCGGGCC-----CCCCGGGTCSEEEEECSCC--C--------CSCCEEEEEEECCSCHHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCChHHccCCc--ccCChhhccCCEEEECCCC--C--------CCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhCC
Confidence 99999999984332 2457999999999999963 2 3678899999999999999999999999999999
Q ss_pred CCcEEEEEEECCeEEEEecCCCCceeeecccCCCCCCHHHHHHHh-hc-----------------------CCccccchh
Q 002987 305 PTARIGIILYGRTVSVYDFSEDSIASSDVLAGDKLPTEDSLKALL-YG-----------------------TGVYLSPMH 360 (860)
Q Consensus 305 ~~~~VGlITFd~~V~vy~l~~~~~~~~~V~~g~~~p~~~~l~~l~-~~-----------------------~~~fL~pl~ 360 (860)
++++|||||||++||||+++...+.+++|++|+++++.+++++++ +. .++||+|++
T Consensus 153 ~~~~VGlITf~~~V~~y~l~~~~~~~~~V~~g~k~~~~~q~~~~l~~l~~~~~~~~~~~~~~~~f~p~~~~~~~~lv~l~ 232 (768)
T 1m2o_A 153 PNALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLE 232 (768)
T ss_dssp TTCEEEEEEESSEEEECCCSSSSSEEEEEEETTSCCCHHHHHHHHHSCCCC---------------CCSSSGGGGSEEHH
T ss_pred CCCEEEEEEECCEEEEEECCCCCCcceeeecCCccccHHHHHHHHhhccccccCCccccccccccccccCCccceeeeHH
Confidence 999999999999999999998888999999999999999998877 20 357999999
Q ss_pred hhHHHHHHHHhhhccCccccccCCCC-CchHHHHHHHHHHhcCCCcccccccccCCCCCcEEEEEeCCCCCCCCCCccCC
Q 002987 361 ASKQVAHDIFSSLRPYKLNITEASRD-RCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGGPNTYGPGSVPHS 439 (860)
Q Consensus 361 e~~~~i~~lL~~L~~~~~~~~~~~r~-r~~G~AL~~A~~lL~~~~~~~~~~~~k~~~~ggrIivF~sGppt~GpG~l~~~ 439 (860)
||++.|+++|++|+++.|....++++ ||+|+||++|..+|+.+++ +.||||++|++|+||.|||+|+.+
T Consensus 233 e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~----------~~GGrI~~F~sg~pt~GpG~l~~r 302 (768)
T 1m2o_A 233 QVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYK----------NIPARIILFASGPGTVAPGLIVNS 302 (768)
T ss_dssp HHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHHHHHHHCT----------TSCCEEEEEESSCCCSSSSCCSCS
T ss_pred HHHHHHHHHHHhccccccccCCCCCCcccHHHHHHHHHHHHhhccC----------CCCcEEEEEeCCCCCCCCcccccc
Confidence 99999999999999977755555565 9999999999999985322 268999999999999999999998
Q ss_pred CCCCCc-----------hhhhHhHHHHHHHHHHHHHhCCcEEEEEeecCCCCCcccchhhhcccccEEEEeCCchh-HHH
Q 002987 440 FSHPNY-----------LHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKASGGVLVLHDDFGE-AFG 507 (860)
Q Consensus 440 ~~~~~~-----------~~~ek~a~~fY~~La~~~~~~gisVDiF~~~~~~v~la~l~~L~~~TGG~v~~y~~f~~-~f~ 507 (860)
++++.. ++ .+++.+||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+. .|.
T Consensus 303 ~~~~~~rs~~d~~k~~~~~-~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~~dla~l~~l~~~TGG~v~~y~~f~~~~~~ 381 (768)
T 1m2o_A 303 ELKDPLRSHHDIDSDHAQH-YKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFK 381 (768)
T ss_dssp BTTSCCCCHHHHHHTCCTT-HHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCSHHHHHHHHHHHTCCEEEESCTTSHHHH
T ss_pred ccccccccccccccchhhh-cCchHHHHHHHHHHHHHCCeEEEEEEccCCccChHHHhhHhhcCCceEEEcCCCchHHHH
Confidence 765432 22 27899999999999999999999999999999999999999999999999999985 699
Q ss_pred HHHHHHHhc------ccccceEEEEEecCCeeEEEeeCCCccccc-cccc----ccccCcccceeccCCCCceEEEEEEE
Q 002987 508 VNLQRASTR------AAGSHGFLEIRCSDDILVTQIVGPGEEAHI-DTHE----TFKNDAALSIQMPSVEETQSFAVSME 576 (860)
Q Consensus 508 ~dL~r~l~r------~~g~~a~lrVR~S~gi~v~~~~G~~~s~~~-~~~~----~~~~~~~~~i~l~~v~~~~S~~~~~~ 576 (860)
++|+|.|++ ++||+|+||||||+|++|+++|||+.+.++ ++.+ .++.++.+.|++++++++++|+|+|+
T Consensus 382 ~~l~r~l~~~~~~~~~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~~vsd~~ig~~~t~~~~l~~~~~d~t~~v~f~ 461 (768)
T 1m2o_A 382 QSYLRLFAKDEEGYLKMAFNGNMAVKTSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAIFFE 461 (768)
T ss_dssp HHHHHTTCBCTTSSBSCEEEEEEEEEECTTEEEEEEESSCEECCSCCCSCBCSSCSSBCSCSEEEEEEECTTCCEEEEEE
T ss_pred HHHHHHHhhccccccceEEEEEEEEEecCCceEEEeecCccccccccccccCcceeccCCCceEEeecCCCCCEEEEEEE
Confidence 999999998 689999999999999999999999987654 3322 23345567899999999999999999
Q ss_pred eccCC--------------CCCceEEEEEEEEEecCCcEEEEEEEeeecccCc-hHHHHhhcCHHHHHHHHHHHHHHHHh
Q 002987 577 NKRDI--------------ESNHVFFQFAIRYSNVYQADISRVVTVRLPTVDS-VSAYLSSFQDEVAAVLIAKRTLLRAK 641 (860)
Q Consensus 577 ~~~~~--------------~~~~~~iQ~al~YT~~~G~RriRV~T~~l~vt~~-~~~v~~s~D~ea~~~llaK~av~~~~ 641 (860)
+++.. +...+|||||++||+.+|+|||||||++++|+++ +.++|+++|+||++++|||+|+++++
T Consensus 462 ~~~~~~~~~~~~~~~l~~~~~~~~~iQ~a~lYt~~~G~rriRV~T~~~~~t~~~~~~v~~~~Dqea~~~llar~av~~~~ 541 (768)
T 1m2o_A 462 IANTAANSNPMMSAPGSADRPHLAYTQFITTYQHSSGTNRIRVTTVANQLLPFGTPAIAASFDQEAAAVLMARIAVHKAE 541 (768)
T ss_dssp ECCC-----------------CEEEEEEEEEEEETTTEEEEEEEEEEEEEECTTCHHHHHTBCHHHHHHHHHHHHHHHTT
T ss_pred eccccccccccccccccccCCCcEEEEEEEEEEcCCCCEEEEEEeecccccCccHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 99875 3478999999999999999999999999999986 89999999999999999999999998
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHhcccCCCC--CccccchhhhHHHHHHHHHccCcCCCCCCCCchHHHHHHHHHhccCHH
Q 002987 642 IFSEAIDMRTMIDERVKDIALKFGSQVPKS--KLYRFPKELSALSELLFHLRRSPLLGNIIGHDDERSVLRNLFLNASFD 719 (860)
Q Consensus 642 ~~~~~~d~r~~Ld~~li~il~~y~~~~~~~--~~l~Lp~~l~~lP~~~~~L~RS~~L~~~~~spDer~~~~~~l~~~~v~ 719 (860)
+ ++..|+|+||+++|++++++|+.| +|. .+|+||++|++||+|||||+||++|++++++||||+|+|++++++++.
T Consensus 542 ~-~~~~d~r~~l~~~li~l~~~~~~Y-rk~~~~~l~lp~~lk~lP~~~~~L~ks~~l~~~~~spDer~~~~~~l~~~~~~ 619 (768)
T 1m2o_A 542 T-DDGADVIRWLDRTLIKLCQKYADY-NKDDPQSFRLAPNFSLYPQFTYYLRRSQFLSVFNNSPDETAFYRHIFTREDTT 619 (768)
T ss_dssp S-SCHHHHHHHHHHHHHHHHHHHSBC-CTTCGGGCBCCTTTTHHHHHHHHHHHSTTTCCTTSCHHHHHHHHHHHTTSCHH
T ss_pred c-CCHHHHHHHHHHHHHHHHHHHHHH-hcCCccccccCHHHHHHHHHHHHHhcccccCCCCCChhHHHHHHHHHHcCCHH
Confidence 8 489999999999999999988877 443 359999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccceeeccCCccccCCccccccCCCcEEEEeCCcEEEEEeCCcccC--------Cccc--hHHHHHHHHHHHH
Q 002987 720 LSLRMVAPRCLMYREGGTFEELPAYDLAMQSDKAVVLDHGTDVFIWLGAELAA--------DEGR--SAAALAACRTLAE 789 (860)
Q Consensus 720 ~~l~~iyP~L~~~~~~~~~~~lP~~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~--------~~~~--~~~~l~~~~~~a~ 789 (860)
+++.||||+||+||.++...+++++..+|++|||||||+|++|+||+|+++++ ++++ +++++++++.+|+
T Consensus 620 ~~l~~iyP~L~~~~~~~~P~~v~Ls~~~l~~~gi~LLD~g~~i~i~~G~~v~~~~~~~~~~~~~~~~~~~ll~~p~~~a~ 699 (768)
T 1m2o_A 620 NSLIMIQPTLTSFSMEDDPQPVLLDSISVKPNTILLLDTFFFILIYHGEQIAQWRKAGYQDDPQYADFKALLEEPKLEAA 699 (768)
T ss_dssp HHHHHHSCEEEEECSSSCCEECCSBGGGCCTTCEEEEECSSEEEEEECHHHHHHHHHTGGGSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCeEEEecCCCCCcceeCcHHHcCCCCEEEEECCCEEEEEECCcchHHHhcccCCCchhhhHHHHhhhhHHHHH
Confidence 99999999999999877655667778899999999999999999999999975 3344 4788999999999
Q ss_pred HHHhccCCCcEEEEEecCCC-CcceeeeecCCCCCCCc
Q 002987 790 ELSEFRFPAPRILAFKVLFC-SIPLPCIVLSFYSTWQP 826 (860)
Q Consensus 790 ~l~~~R~p~Pr~i~~~qg~s-~r~lp~~lvp~~~~~~~ 826 (860)
+|+++|||+||+++|+||++ +|||.+||+|.. .|+
T Consensus 700 ~i~~~R~p~Pr~i~~~~~~sqarfl~s~L~p~~--~~~ 735 (768)
T 1m2o_A 700 ELLVDRFPLPRFIDTEAGGSQARFLLSKLNPSD--NYQ 735 (768)
T ss_dssp HHHHTCSSCCEEEEEETTCGGGHHHHTTSBCC------
T ss_pred HHHhcCCCCceEEEECCCCcHHHHHHHHcCCCc--ccc
Confidence 99999999999999999998 999999999988 565
No 3
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=100.00 E-value=1.1e-123 Score=1125.75 Aligned_cols=662 Identities=14% Similarity=0.235 Sum_probs=572.1
Q ss_pred ccccccCCCCCCC-CCCccccCCccccccc-ccccccCCCCCCCCeeeeecCccCCCHhhhhcCCCceEEEEccCCCCCC
Q 002987 109 PVALSSGSSFPTS-SPPHFSNGSAELQHQV-PHAAEETMPVGESSCVLFSAHKVLKKKKQANVPSLGFGALVSPGKEVSP 186 (860)
Q Consensus 109 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vR~T~~~iP~t~~~~~~~~lP~g~vv~P~~~~~~ 186 (860)
||+++.+ ++... +++|.++..+..|+.. .+|...+..||+|+|||+|||+||.|++++++++|||||+|+||++..+
T Consensus 1 ~~~~~~~-~~~~~~~~~f~t~~~~~~pP~~~t~~~~~d~gn~~p~~~R~T~~~iP~t~~l~~~~~lPlg~~i~P~~~~~~ 79 (766)
T 3eh2_A 1 PIQVIED-DRNNRGTEPFVTGVRGQVPPLVTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPP 79 (766)
T ss_dssp CTHHHHH-HHHHHCCSEEETTSTTCCCCCTTSCCEEECSSSCCTTTEEESBSEEESSHHHHHHHTCCEEEEECTTCCCCT
T ss_pred CceehHh-HHHhhCCCCcccCCCCCCCCCCCCceEeeccCCCCCceEEcccccCCCCHHHHHhCCCCeEEEEecCCcCcc
Confidence 4555544 33333 6889999877777777 8899999999999999999999999999999999999999999998654
Q ss_pred C---Cccc---CCCCcccCCCccccccceEEEcCCCEEEEccCCCcCCCCccccCC-----CccccCCCCCcCCCceeEE
Q 002987 187 S---LQII---QRDPHRCHNCGAFANIYCKILLGSGQWQCVICRNLNGSEGEYVAP-----SKEELRNFPELSSPMVDYV 255 (860)
Q Consensus 187 ~---~p~v---~~~pvRC~~C~AYiNPf~~~~~~~~~W~C~~C~~~N~lp~~Y~~~-----~~~d~~~~PEL~~~tvEy~ 255 (860)
. +|++ +++|+||++|||||||||+|+++|++|+||||++.|++|++|++. .+.|.++||||+.++|||+
T Consensus 80 ~e~~~pvv~~~~~~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~~vef~ 159 (766)
T 3eh2_A 80 EEASPYVVDHGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDRPELSLGSYEFL 159 (766)
T ss_dssp TSCCCEEECCGGGCCCBCTTTCCBCCTTCEEEGGGTEEECTTTCCEEECCTTTTGGGGGSSSCCCCSCCHHHHCSEEEEE
T ss_pred cCCCCCeecCCCCCCCccCCCCCEeCCceEEecCCCEEEeccccccCCCCHHHhccccccccccccccCcccccCceeee
Confidence 2 4555 478999999999999999999999999999999999999999753 4678889999999999999
Q ss_pred ecCCCCCCCCCCCCCCCCCcEEEEEECCCC---hhHHHHHHHHHHHhhhcCCCC-------cEEEEEEECCeEEEEecCC
Q 002987 256 QTGNNRSSYVPVSDSRMSAPIILVIDECLD---EPHLQHLQSSLHAFVESIPPT-------ARIGIILYGRTVSVYDFSE 325 (860)
Q Consensus 256 ~p~~yr~~~~~~~~~~~~p~~vFvID~S~~---~~~l~~l~~sL~~~L~~Lp~~-------~~VGlITFd~~V~vy~l~~ 325 (860)
++.+|.... ..+++|.|+||||+|.+ +|++++++++|+++|+.||++ ++|||||||++||||+++.
T Consensus 160 a~~eY~~~~----~~p~pp~y~FvIDvs~~av~sg~l~~~~~si~~~L~~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~ 235 (766)
T 3eh2_A 160 ATVDYCKNN----KFPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKS 235 (766)
T ss_dssp CCGGGSGGG----SCCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECCT
T ss_pred cCHhhccCC----CCCCCCEEEEEEECchhhccchHHHHHHHHHHHHHHhCCcccccCCccceEEEEEeCCEEEEEECCC
Confidence 999983100 01467889999999986 489999999999999999964 9999999999999999997
Q ss_pred CC-ceeeecccCCCCCCHHHHHHHhh-cCCccccchhhhHHHHHHHHhhhccCccccccCCCCCchHHHHHHHHHHhcCC
Q 002987 326 DS-IASSDVLAGDKLPTEDSLKALLY-GTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGP 403 (860)
Q Consensus 326 ~~-~~~~~V~~g~~~p~~~~l~~l~~-~~~~fL~pl~e~~~~i~~lL~~L~~~~~~~~~~~r~r~~G~AL~~A~~lL~~~ 403 (860)
+. ..+++|++|..++ +. ..++||+|++||++.|+++|++|++++.+. ..+.+|+|+||++|+.+|+..
T Consensus 236 ~~~~~q~~vv~dl~d~--------f~P~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~--~~~~t~~g~al~aa~~~l~~~ 305 (766)
T 3eh2_A 236 SLAQPQMMVVSDVADM--------FVPLLDGFLVNVNESRAVITSLLDQIPEMFADT--RETETVFVPVIQAGMEALKAA 305 (766)
T ss_dssp TCSSCEEEEECCTTTC--------CCCCCTTSSBCTTTTHHHHHHHHHHHHHHHTTC--CCCCCCSHHHHHHHHHHHHHT
T ss_pred CCCCceEEEecChhhh--------ccccccceeEeHHHHHHHHHHHHHhhhhhccCC--CCCcchHHHHHHHHHHHhccC
Confidence 64 5667777543322 11 135689999999999999999999976543 246799999999999999752
Q ss_pred CcccccccccCCCCCcEEEEEeCCCCC-CCCCCccCCCCCCCchh-----hhHhHHHHHHHHHHHHHhCCcEEEEEeecC
Q 002987 404 SAEMSRGVVKRPGGNSRIIVCAGGPNT-YGPGSVPHSFSHPNYLH-----MEKMALKWMELLGRKAHQHNAVIDILCAGN 477 (860)
Q Consensus 404 ~~~~~~~~~k~~~~ggrIivF~sGppt-~GpG~l~~~~~~~~~~~-----~ek~a~~fY~~La~~~~~~gisVDiF~~~~ 477 (860)
+.||||++|++|.|+ .|||+|+.+++++..++ ..+++.+||++||++|+++||+||+|+++.
T Consensus 306 ------------~~GGkI~~F~s~lP~t~GpG~l~~r~~~~~~~sdke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~ 373 (766)
T 3eh2_A 306 ------------ECAGKLFLFHTSLPIAEAPGKLKNRDDRKLINTDKEKTLFQPQTGAYQTLAKECVAQGCCVDLFLFPN 373 (766)
T ss_dssp ------------TCCEEEEEEECSCCCSSSTTCCCCCCCGGGTTSTTGGGGTSCSSTHHHHHHHHHHHHTEEEEEEECCS
T ss_pred ------------CCCcEEEEEecCCCCcCCCcccccccccccCCCcchhhhccchHHHHHHHHHHHHhCCeEEEEEEecC
Confidence 369999999999555 89999999876543322 236889999999999999999999999999
Q ss_pred CCCCcccchhhhcccccEEEEeCCchh-----HHHHHHHHHHhcccccceEEEEEecCCeeEEEeeCCCccccccccccc
Q 002987 478 CPVRVPVLQPLAKASGGVLVLHDDFGE-----AFGVNLQRASTRAAGSHGFLEIRCSDDILVTQIVGPGEEAHIDTHETF 552 (860)
Q Consensus 478 ~~v~la~l~~L~~~TGG~v~~y~~f~~-----~f~~dL~r~l~r~~g~~a~lrVR~S~gi~v~~~~G~~~s~~~~~~~~~ 552 (860)
+|+|+++|+.|++.|||.+++|++|+. +|.++|+|.+++++||+|+||||||+|++|+++||| |
T Consensus 374 ~~vdlatl~~l~~~TGG~v~~y~~F~~~~d~~~f~~dl~~~l~~~~gf~a~mrVR~S~glkv~~~~G~-----------~ 442 (766)
T 3eh2_A 374 QYVDVATLSVVPQLTGGSVYKYASFQVENDQERFLSDLRRDVQKVVGFDAVMRVRTSTGIRAVDFFGA-----------F 442 (766)
T ss_dssp SCCCHHHHTHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHHHHSCEEEEEEEEEEECTTEEEEEEEES-----------C
T ss_pred CCcChHHHHHHHhhcCceEEEeCCCcchhHHHHHHHHHHHHhhhcceeeEEEEEEecCCeEEEEeECC-----------e
Confidence 999999999999999999999999963 599999999999999999999999999999999995 4
Q ss_pred ccCcccceeccCCCCceEEEEEEEeccCCC-CCceEEEEEEEEEecCCcEEEEEEEeeecccCchHHHHhhcCHHHHHHH
Q 002987 553 KNDAALSIQMPSVEETQSFAVSMENKRDIE-SNHVFFQFAIRYSNVYQADISRVVTVRLPTVDSVSAYLSSFQDEVAAVL 631 (860)
Q Consensus 553 ~~~~~~~i~l~~v~~~~S~~~~~~~~~~~~-~~~~~iQ~al~YT~~~G~RriRV~T~~l~vt~~~~~v~~s~D~ea~~~l 631 (860)
+.++...|++++++++++|+|+|++++.+. ...+|||+|++||+.+|+|||||||++++|++++.++|+++|+||++++
T Consensus 443 ~~~~t~~~~l~~i~~d~s~~v~f~~~~~l~~~~~~~~Q~allYt~~~G~RRiRV~T~~l~vt~~~~~v~~~~Dqea~~~l 522 (766)
T 3eh2_A 443 YMSNTTDVELAGLDGDKTVTVEFKHDDRLNEESGALLQCALLYTSCAGQRRLRIHNLALNCCTQLADLYRNCETDTLINY 522 (766)
T ss_dssp BCSSSSCEEEEEEETTCCEEEEEEESSCCCTTTCEEEEEEEEEECTTSCEEEEEEEEEEEEESSHHHHHHTBCHHHHHHH
T ss_pred ecCCCCceeeccCCCCceEEEEEEecCCCCCCCcEEEEEEEEeEcCCCCEEEEEEEEeeEecCCHHHHHHhcCHHHHHHH
Confidence 445566789999999999999999999876 5789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHhcccCC---CCCccccchhhhHHHHHHHHHccCcCCCC-CCCCchHHH
Q 002987 632 IAKRTLLRAKIFSEAIDMRTMIDERVKDIALKFGSQVP---KSKLYRFPKELSALSELLFHLRRSPLLGN-IIGHDDERS 707 (860)
Q Consensus 632 laK~av~~~~~~~~~~d~r~~Ld~~li~il~~y~~~~~---~~~~l~Lp~~l~~lP~~~~~L~RS~~L~~-~~~spDer~ 707 (860)
|||+|++++++ ++++++|++|+++|++++..||+.|. ..+||+||++|++||+|||||+||++|++ +++++|||+
T Consensus 523 lar~av~~~~~-~~~~~~R~~l~~~~~~~l~~Yrk~~~~~~s~~ql~lp~~lkllP~~~~~L~Ks~~l~~~~~~s~Der~ 601 (766)
T 3eh2_A 523 MAKFAYRGVLN-SPVKAVRDTLITQCAQILACYRKNCASPSSAGQLILPECMKLLPVYLNCVLKSDVLQPGAEVTTDDRA 601 (766)
T ss_dssp HHHHHHHHTTT-SCHHHHHHHHHHHHHHHHHHHHHHC------CCCCCCGGGTTHHHHHHHHHTSTTTSCCTTCCHHHHH
T ss_pred HHHHHHHHhhh-CCHHHHHHHHHHHHHHHHHHHHhhccCCCCccceecCHHHHHHHHHHHHHHccHhhcCCCCCCccHHH
Confidence 99999999987 58999999999999999999999864 24679999999999999999999999997 689999999
Q ss_pred HHHHHHhccCHHHHHHhhcccceeeccCC--c---cccCCccccccCCCcEEEEeCCcEEEEEeCCcccCCccc------
Q 002987 708 VLRNLFLNASFDLSLRMVAPRCLMYREGG--T---FEELPAYDLAMQSDKAVVLDHGTDVFIWLGAELAADEGR------ 776 (860)
Q Consensus 708 ~~~~~l~~~~v~~~l~~iyP~L~~~~~~~--~---~~~lP~~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~~~~~------ 776 (860)
|+|++++++++.+++.||||+||++|+.. . ..+++++..+|++|||||||+|++|+||+|++++++...
T Consensus 602 ~~~~~l~~~~~~~~l~~iyP~L~~~h~~~~~~~~~P~~v~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~~~l~dlFgv~ 681 (766)
T 3eh2_A 602 YVRQLVTSMDVTETNVFFYPRLLPLTKSPVESTTEPPAVRASEERLSNGDIYLLENGLNLFLWVGASVQQGVVQSLFSVS 681 (766)
T ss_dssp HHHHHHHHCCHHHHHHHHSCEEEECSSCCCSCC--CCCBCSSGGGCCTTCEEEEECSSEEEEEECTTCCHHHHHHHHSCS
T ss_pred HHHHHHHCCCHHHHHHHHhheEEEeecCCcccccCCCCcCCcHHHcCCCcEEEEEcCcEEEEEecCCCCHHHHHHHcCCC
Confidence 99999999999999999999999998531 1 112334667899999999999999999999999864210
Q ss_pred ---------------hHHHHHHHHHHHHHHHhccCCCcEEEEEecCCC
Q 002987 777 ---------------SAAALAACRTLAEELSEFRFPAPRILAFKVLFC 809 (860)
Q Consensus 777 ---------------~~~~l~~~~~~a~~l~~~R~p~Pr~i~~~qg~s 809 (860)
-.++-+++|+.++.++++|..++++++++||+.
T Consensus 682 ~~~~i~~~~~~lp~~~~~~s~~vr~ii~~lr~~~~~~~~l~ivr~~~~ 729 (766)
T 3eh2_A 682 SFSQITSGLSVLPVLDNPLSKKVRGLIDSLRAQRSRYMKLTVVKQEDK 729 (766)
T ss_dssp SGGGSCTTCCSCCCCSSHHHHHHHHHHHHHHTTSSSCCEEEEEESSSS
T ss_pred chhhcCcccccCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCC
Confidence 135667899999999999977777777776654
No 4
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=100.00 E-value=1.3e-123 Score=1125.77 Aligned_cols=664 Identities=14% Similarity=0.223 Sum_probs=573.7
Q ss_pred CCccccccCCCCCCC-CCCccccCCccccccc-ccccccCCCCCCCCeeeeecCccCCCHhhhhcCCCceEEEEccCCCC
Q 002987 107 PQPVALSSGSSFPTS-SPPHFSNGSAELQHQV-PHAAEETMPVGESSCVLFSAHKVLKKKKQANVPSLGFGALVSPGKEV 184 (860)
Q Consensus 107 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vR~T~~~iP~t~~~~~~~~lP~g~vv~P~~~~ 184 (860)
|+||+++.+ ++... +.+|.++..+..|+.. .++...+..||+|+|||+|||+||.+++++++++||||++|+||++.
T Consensus 3 ps~~~~~~~-~~~~~~~~~~~t~~~~~~pp~~~~~~~~~d~gn~~p~~~R~T~n~iP~t~~l~~~~~lPlg~~i~Pl~~~ 81 (770)
T 3efo_B 3 GSPIQVIEN-DRASRGGQVYATNTRGQIPPLVTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATI 81 (770)
T ss_dssp CCHHHHHHH-HHHHHTTSEEETTSSSCCCCCTTSCCEEECSSSCCTTTEEESBSEEESSHHHHHHHCCCCEEEECTTCCC
T ss_pred CchHHHHHH-HHHhcCCCCccCCCCCCCCCCCCCceeeeecCCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEEcCCCC
Confidence 789999877 44445 4488888776667666 88888899999999999999999999999999999999999999987
Q ss_pred CCC---Cccc---CCCCcccCCCccccccceEEEcCCCEEEEccCCCcCCCCccccCC-----CccccCCCCCcCCCcee
Q 002987 185 SPS---LQII---QRDPHRCHNCGAFANIYCKILLGSGQWQCVICRNLNGSEGEYVAP-----SKEELRNFPELSSPMVD 253 (860)
Q Consensus 185 ~~~---~p~v---~~~pvRC~~C~AYiNPf~~~~~~~~~W~C~~C~~~N~lp~~Y~~~-----~~~d~~~~PEL~~~tvE 253 (860)
.++ +|++ +++|+||++|||||||||+|+++|++|+||||++.|++|++|++. .+.|.++||||++++||
T Consensus 82 ~~~e~p~pvv~~~~~~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~tvE 161 (770)
T 3efo_B 82 PSNESPLYLVNHGESGPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPFYFQHLDHIGRRLDHYEKPELSLGSYE 161 (770)
T ss_dssp CTTSCCCCEECCTTTCSCBCTTTCCBSCTTCEEEGGGTEEECTTTCCEEECCGGGCCCCCSSSCTTTGGGSHHHHCSEEE
T ss_pred CcccCCCCcccCCCCCCCccCCCCCCcCCceEEecCCCEEEeccccccCCCchHhhccccccccccccccCcccccCcee
Confidence 542 4555 478999999999999999999999999999999999999999753 35678899999999999
Q ss_pred EEecCCCCCCCCCCCCCCCCCcEEEEEECCCC---hhHHHHHHHHHHHhhhcCCCC-------cEEEEEEECCeEEEEec
Q 002987 254 YVQTGNNRSSYVPVSDSRMSAPIILVIDECLD---EPHLQHLQSSLHAFVESIPPT-------ARIGIILYGRTVSVYDF 323 (860)
Q Consensus 254 y~~p~~yr~~~~~~~~~~~~p~~vFvID~S~~---~~~l~~l~~sL~~~L~~Lp~~-------~~VGlITFd~~V~vy~l 323 (860)
|++|.+|.... ..+++|.|+||||+|.+ +|++++++++|+++|+.||++ ++|||||||++||||++
T Consensus 162 f~ap~eY~~~~----~~p~pp~y~FvIDvs~~av~sg~l~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l 237 (770)
T 3efo_B 162 YVATLDYCRKS----KPPNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNV 237 (770)
T ss_dssp EECCGGGSGGG----SCCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEEC
T ss_pred eecCHHHhccC----CCCCCcEEEEEEEcchhhccchHHHHHHHHHHHHHHhCCccccccCccceEEEEEeCCEEEEEeC
Confidence 99999983100 11467889999999986 479999999999999999964 89999999999999999
Q ss_pred CCCC-ceeeecccCCCCCCHHHHHHHhh-cCCccccchhhhHHHHHHHHhhhccCccccccCCCCCchHHHHHHHHHHhc
Q 002987 324 SEDS-IASSDVLAGDKLPTEDSLKALLY-GTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQ 401 (860)
Q Consensus 324 ~~~~-~~~~~V~~g~~~p~~~~l~~l~~-~~~~fL~pl~e~~~~i~~lL~~L~~~~~~~~~~~r~r~~G~AL~~A~~lL~ 401 (860)
+... ..++.|++|..++ +. ..++||+|++||++.|+++|++|+.++.+. ..+.+|+|+||++|+.+++
T Consensus 238 ~~~~~q~q~~vv~d~~d~--------f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~--~~~~t~~g~al~aa~~~l~ 307 (770)
T 3efo_B 238 KSNLAQPQMMVVTDVGEV--------FVPLLDGFLVNYQESQSVIHNLLDQIPDMFADS--NENETVFAPVIQAGMEALK 307 (770)
T ss_dssp CTTCSSCEEEEECCTTSC--------CCCCSSSSSBCTTTTHHHHHHHHHHHHHHHHTC--CCCCCCCHHHHHHHHHHHH
T ss_pred CCcccCceEEEecccccc--------cCCCccceeeeHHHHHHHHHHHHHhhHhhccCC--CCCcchHHHHHHHHHHHhc
Confidence 8653 3445555543221 11 135689999999999999999999875443 2467999999999999997
Q ss_pred CCCcccccccccCCCCCcEEEEEeCCCCC-CCCCCccCCCCCCCchh-----hhHhHHHHHHHHHHHHHhCCcEEEEEee
Q 002987 402 GPSAEMSRGVVKRPGGNSRIIVCAGGPNT-YGPGSVPHSFSHPNYLH-----MEKMALKWMELLGRKAHQHNAVIDILCA 475 (860)
Q Consensus 402 ~~~~~~~~~~~k~~~~ggrIivF~sGppt-~GpG~l~~~~~~~~~~~-----~ek~a~~fY~~La~~~~~~gisVDiF~~ 475 (860)
.. +.||||++|++|.|+ .|||+|+.|++++..++ ..+++.+||++||++|+++||+||+|++
T Consensus 308 ~~------------~~GGkI~~F~s~lP~t~GpG~l~~r~~~~~~~t~ke~~~~~~a~~fY~~lA~~~~~~~i~VDlF~~ 375 (770)
T 3efo_B 308 AA------------DCPGKLFIFHSSLPTAEAPGKLKNRDDKKLVNTDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLF 375 (770)
T ss_dssp HH------------TCCEEEEEEECSCCCSSSTTCCCCCCCCCCSSCSCGGGGGSCSSSHHHHHHHHHHHTTEEEEEEEC
T ss_pred cC------------CCCcEEEEEecCCCCcCCCccccccccccccCCcchhhhhcchHHHHHHHHHHHHHcCeEEEEEEe
Confidence 41 358999999999555 89999999887654432 2368899999999999999999999999
Q ss_pred cCCCCCcccchhhhcccccEEEEeCCch-----hHHHHHHHHHHhcccccceEEEEEecCCeeEEEeeCCCccccccccc
Q 002987 476 GNCPVRVPVLQPLAKASGGVLVLHDDFG-----EAFGVNLQRASTRAAGSHGFLEIRCSDDILVTQIVGPGEEAHIDTHE 550 (860)
Q Consensus 476 ~~~~v~la~l~~L~~~TGG~v~~y~~f~-----~~f~~dL~r~l~r~~g~~a~lrVR~S~gi~v~~~~G~~~s~~~~~~~ 550 (860)
+.+|+|+++|+.|++.|||.+++|++|+ ++|.++|+|.+++++||+|+||||||+|++|+++|||
T Consensus 376 s~~~vdlatl~~l~~~TGG~v~~y~~F~~~~~~~~f~~dl~~~l~~~~gf~a~mrVR~S~gl~v~~~~G~---------- 445 (770)
T 3efo_B 376 PSQYVDVASLGLVPQLTGGTLYKYNNFQMHLDRQQFLNDLRNDIEKKIGFDAIMRVRTSTGFRATDFFGG---------- 445 (770)
T ss_dssp CSSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHHHHSCEEEEEEEEEEECTTEEEEEEESS----------
T ss_pred cCCccChHHHHHHHhhcCceEEEecCCcchhHHHHHHHHHHHhhhhceeeeEEEEEEecCCeEEEEeECC----------
Confidence 9999999999999999999999999996 4689999999999999999999999999999999995
Q ss_pred ccccCcccceeccCCCCceEEEEEEEeccCCCC-CceEEEEEEEEEecCCcEEEEEEEeeecccCchHHHHhhcCHHHHH
Q 002987 551 TFKNDAALSIQMPSVEETQSFAVSMENKRDIES-NHVFFQFAIRYSNVYQADISRVVTVRLPTVDSVSAYLSSFQDEVAA 629 (860)
Q Consensus 551 ~~~~~~~~~i~l~~v~~~~S~~~~~~~~~~~~~-~~~~iQ~al~YT~~~G~RriRV~T~~l~vt~~~~~v~~s~D~ea~~ 629 (860)
|+.++...|++++++++++|+|+|++++.+.. ..+|||+|++||+.+|+|||||||++++|++++.++|+++|+||++
T Consensus 446 -~~~~~t~~~~l~~~~~d~s~~v~f~~~~~l~~~~~~~~Q~allYt~~~G~RRiRV~T~~l~vt~~~~~v~~~~Dqea~~ 524 (770)
T 3efo_B 446 -ILMNNTTDVEMAAIDCDKAVTVEFKHDDKLSEDSGALIQCAVLYTTISGQRRLRIHNLGLNCSSQLADLYKSCETDALI 524 (770)
T ss_dssp -CBCSSSSCEEEEEEESSCCEEEEEEESSCCBTTTBEEEEEEEEEECTTCCEEEEEEEEEEEEESCHHHHHHTBCHHHHH
T ss_pred -eeCCCCCceEecccCcCceEEEEEEecCCCCCCCcEEEEEEEEEEcCCCCEEEEEEEechhhcccHHHHHHhcCHHHHH
Confidence 44444567899999999999999999998764 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHhcccCCC---CCccccchhhhHHHHHHHHHccCcCCCC-CCCCchH
Q 002987 630 VLIAKRTLLRAKIFSEAIDMRTMIDERVKDIALKFGSQVPK---SKLYRFPKELSALSELLFHLRRSPLLGN-IIGHDDE 705 (860)
Q Consensus 630 ~llaK~av~~~~~~~~~~d~r~~Ld~~li~il~~y~~~~~~---~~~l~Lp~~l~~lP~~~~~L~RS~~L~~-~~~spDe 705 (860)
++|||+|++++++ ++++++|++|.++|++++..||+.|.. .++|+||++||+||+|||||+||++|+. +++++||
T Consensus 525 ~llar~av~~~~~-~~l~~~r~~L~~~~~~~l~~Yrk~~~~~~s~~ql~Lp~~lkllP~~~~~L~Ks~~l~~~~~~s~De 603 (770)
T 3efo_B 525 NFFAKSAFKAVLH-QPLKVIREILVNQTAHMLACYRKNCASPSAASQLILPDSMKVLPVYMNCLLKNCVLLSRPEISTDE 603 (770)
T ss_dssp HHHHHHHHHHTTT-SCHHHHHHHHHHHHHHHHHHHHHHTSCCCCTTEEEECGGGTTHHHHHHHHHHSGGGSCSSSSCHHH
T ss_pred HHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHhccCCCCccceecCHHHHHHHHHHHHHhCcHhhcCCCCCCccH
Confidence 9999999999988 589999999999999999999998743 4679999999999999999999999996 7899999
Q ss_pred HHHHHHHHhccCHHHHHHhhcccceeeccCC-ccc----cCCccccccCCCcEEEEeCCcEEEEEeCCcccCCccc----
Q 002987 706 RSVLRNLFLNASFDLSLRMVAPRCLMYREGG-TFE----ELPAYDLAMQSDKAVVLDHGTDVFIWLGAELAADEGR---- 776 (860)
Q Consensus 706 r~~~~~~l~~~~v~~~l~~iyP~L~~~~~~~-~~~----~lP~~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~~~~~---- 776 (860)
|+|+|++++++++.+++.||||+||++|+.. +.. +++++..+|++|||||||+|++|+||+|++++++...
T Consensus 604 r~~~~~~l~~~~~~~~l~~iyP~L~~~h~l~~~~~~~P~~v~ls~~~l~~~giyLLD~g~~i~lw~G~~v~~~l~~~lfg 683 (770)
T 3efo_B 604 RAYQRQLVMTMGVADSQLFFYPQLLPIHTLDVKSTMLPAAVRCSESRLSEEGIFLLANGLHMFLWLGVSSPPELIQGIFN 683 (770)
T ss_dssp HHHHHHHHHHCCHHHHHHHHSCEEEECTTCCSSSCSCCCCCCSSGGGCCTTCEEEEECSSEEEEEECTTCCHHHHHHHHS
T ss_pred HHHHHHHHHCCCHHHHHHhhccceEEEeccccccccCCCCcCCcHHHcCCCcEEEEECCcEEEEEecCCCCHHHHHHhcC
Confidence 9999999999999999999999999999631 111 2334667899999999999999999999999874310
Q ss_pred -----------------hHHHHHHHHHHHHHHHhccCCCcEEEEEecCCC
Q 002987 777 -----------------SAAALAACRTLAEELSEFRFPAPRILAFKVLFC 809 (860)
Q Consensus 777 -----------------~~~~l~~~~~~a~~l~~~R~p~Pr~i~~~qg~s 809 (860)
-.+.-+++|+.++.++++|..++++++++||+.
T Consensus 684 v~~~~~i~~~~~~lp~~~~~~s~~vr~ii~~lr~~r~~~~~l~ivr~~~~ 733 (770)
T 3efo_B 684 VPSFAHINTDMTLLPEVGNPYSQQLRMIMGIIQQKRPYSMKLTIVKQREQ 733 (770)
T ss_dssp SSSGGGCCTTCCSCCCCCSSHHHHHHHHHHHHHTTCSSCCEEEEEESTTS
T ss_pred CCchhhcCcccccCCCCCCHHHHHHHHHHHHHHHhCCCCccEEEEeCCCC
Confidence 024567899999999999976777777776654
No 5
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=100.00 E-value=9.5e-123 Score=1114.23 Aligned_cols=616 Identities=19% Similarity=0.285 Sum_probs=538.7
Q ss_pred CCCCCCCeeeeecCccCCCHhhhhcCCCceEEEEccCCCCCCCCcccCC-CCcccCCCccccccceEEEcCCCEEEEccC
Q 002987 145 MPVGESSCVLFSAHKVLKKKKQANVPSLGFGALVSPGKEVSPSLQIIQR-DPHRCHNCGAFANIYCKILLGSGQWQCVIC 223 (860)
Q Consensus 145 ~~~~~~~~vR~T~~~iP~t~~~~~~~~lP~g~vv~P~~~~~~~~p~v~~-~pvRC~~C~AYiNPf~~~~~~~~~W~C~~C 223 (860)
..||+|+|||+|||+||.+++++++++||||++|+||++..+ +|++++ +|+||++|||||||||+|. ++++|+||||
T Consensus 35 ~~n~~p~~~R~T~n~iP~t~~~~~~~~lPlg~~i~Pl~~~~~-~P~v~~~~p~RC~rCrayiNPf~~f~-~~~~w~Cn~C 112 (751)
T 3eh1_A 35 KLNCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLTQ-LPVITSNTIVRCRSCRTYINPFVSFI-DQRRWKCNLC 112 (751)
T ss_dssp HHSCCTTTEEESBSSEESSHHHHHHHCCCCEEEECTTCCCSC-CCEECCSCCCBCTTTCCBCCTTCEES-SSSEEECTTT
T ss_pred ccCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEecCCcCCC-CCccCCCCCCcccCccCEeCCceEEe-cCCEEEcccc
Confidence 568999999999999999999999999999999999998654 777765 6899999999999999995 5699999999
Q ss_pred CCcCCCCccccCC----CccccCCCCCcCCCceeEEecCCC--CCCCCCCCCCCCCCcEEEEEECCCC---hhHHHHHHH
Q 002987 224 RNLNGSEGEYVAP----SKEELRNFPELSSPMVDYVQTGNN--RSSYVPVSDSRMSAPIILVIDECLD---EPHLQHLQS 294 (860)
Q Consensus 224 ~~~N~lp~~Y~~~----~~~d~~~~PEL~~~tvEy~~p~~y--r~~~~~~~~~~~~p~~vFvID~S~~---~~~l~~l~~ 294 (860)
++.|++|++|+.. .+.|.++||||+++||||+++++| |+ +++|.|+||||+|.+ +|.++++|+
T Consensus 113 ~~~N~~P~~y~~~~~~~~~~d~~~rpEL~~~tvEy~~p~~y~~r~--------p~pp~yvFvIDvs~~a~~~g~l~~~~~ 184 (751)
T 3eh1_A 113 YRVNDVPEEFMYNPLTRSYGEPHKRPEVQNSTVEFIASSDYMLRP--------PQPAVYLFVLDVSHNAVEAGYLTILCQ 184 (751)
T ss_dssp CCEEECCGGGC---------CGGGSHHHHCSEEEEEECGGGCSSS--------CCCCEEEEEEECSHHHHHHTHHHHHHH
T ss_pred cCCCCCCHHHhcccccccccCcccCchhccceEEEEcChhhhcCC--------CCCcEEEEEEEccHhhhhhhHHHHHHH
Confidence 9999999999532 245778899999999999999998 43 367889999999985 567999999
Q ss_pred HHHHhhhcCCCCc--EEEEEEECCeEEEEecCCCC-ceeeecccCCC---CCCHHHHHHHhhcCCccccchhhhHHHHHH
Q 002987 295 SLHAFVESIPPTA--RIGIILYGRTVSVYDFSEDS-IASSDVLAGDK---LPTEDSLKALLYGTGVYLSPMHASKQVAHD 368 (860)
Q Consensus 295 sL~~~L~~Lp~~~--~VGlITFd~~V~vy~l~~~~-~~~~~V~~g~~---~p~~~~l~~l~~~~~~fL~pl~e~~~~i~~ 368 (860)
+|+++|+.||+++ +|||||||++||||+++.+. ..++.|++|.. .|.+ .+||+|++||++.|++
T Consensus 185 sl~~~L~~lp~~~~~~VG~ITfd~~vh~y~l~~~~~~~qmlvv~dl~d~f~P~~----------~~~lv~l~e~~~~i~~ 254 (751)
T 3eh1_A 185 SLLENLDKLPGDSRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSDIDDVFLPTP----------DSLLVNLYESKELIKD 254 (751)
T ss_dssp HHHHHTTTSSCCTTCEEEEEEESSSEEEEECCTTCSSCEEEEESCTTCTTSCCG----------GGTSEETTTTHHHHHH
T ss_pred HHHHHHHhcCCCcCcEEEEEEeCCEEEEEECCCCcccceeeccccccccCCCCh----------hhhcccHHHHHHHHHH
Confidence 9999999999754 99999999999999999754 33455554433 3333 3479999999999999
Q ss_pred HHhhhccCccccccCCC-CCchHHHHHHHHHHhcCCCcccccccccCCCCCcEEEEEeCCCCCCCCCCccCCCCCCCchh
Q 002987 369 IFSSLRPYKLNITEASR-DRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGGPNTYGPGSVPHSFSHPNYLH 447 (860)
Q Consensus 369 lL~~L~~~~~~~~~~~r-~r~~G~AL~~A~~lL~~~~~~~~~~~~k~~~~ggrIivF~sGppt~GpG~l~~~~~~~~~~~ 447 (860)
+|++|+.++.+ +++ .||+|+||++|..+|+. .||||++|++|+||.|||+|+.|+++....+
T Consensus 255 lL~~Lp~~~~~---~~~~~~~~G~AL~aA~~ll~~--------------~GGrI~~F~sg~pt~GpG~l~~r~~~~~~~~ 317 (751)
T 3eh1_A 255 LLNALPNMFTN---TRETHSALGPALQAAFKLMSP--------------TGGRVSVFQTQLPSLGAGLLQSREDPNQRSS 317 (751)
T ss_dssp HHHHGGGTSTT---CSCCCCCHHHHHHHHHHHHTT--------------TCEEEEEEECSCCCSSTTCCCCCCCSCGGGG
T ss_pred HHHhhhHhhcC---CCCCccchHHHHHHHHHHhhc--------------CCCEEEEEecCCCCCCCCccccccccccCCC
Confidence 99999886544 234 49999999999999986 5899999999999999999999875442222
Q ss_pred -----hhHhHHHHHHHHHHHHHhCCcEEEEEeecCCCCCcccchhhhcccccEEEEeCCch--------hHHHHHHHHHH
Q 002987 448 -----MEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKASGGVLVLHDDFG--------EAFGVNLQRAS 514 (860)
Q Consensus 448 -----~ek~a~~fY~~La~~~~~~gisVDiF~~~~~~v~la~l~~L~~~TGG~v~~y~~f~--------~~f~~dL~r~l 514 (860)
..+++.+||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+ ++|.+||+|.|
T Consensus 318 ~ke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~~dlatl~~l~~~TGG~v~~y~~F~~~~~~~~~~~f~~dl~r~l 397 (751)
T 3eh1_A 318 TKVVQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSFHYTHNPSQAEKLQKDLKRYL 397 (751)
T ss_dssp SSSCTTCSCSCSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTTCBTTTBHHHHHHHHHHHHHHH
T ss_pred chhhhhhcchHHHHHHHHHHHHhcCceEEEEEccCcccChHhHHHHHhhcCceEEEeCCcccccchhHHHHHHHHHHHHH
Confidence 12688999999999999999999999999999999999999999999999999997 26999999999
Q ss_pred hcccccceEEEEEecCCeeEEEeeCCCcccccccccccccCcccceeccCCCCceEEEEEEEeccCCC-CCceEEEEEEE
Q 002987 515 TRAAGSHGFLEIRCSDDILVTQIVGPGEEAHIDTHETFKNDAALSIQMPSVEETQSFAVSMENKRDIE-SNHVFFQFAIR 593 (860)
Q Consensus 515 ~r~~g~~a~lrVR~S~gi~v~~~~G~~~s~~~~~~~~~~~~~~~~i~l~~v~~~~S~~~~~~~~~~~~-~~~~~iQ~al~ 593 (860)
++++||+|+||||||+||+|+++|||+ ..++.+.|++++++++++|+|+|++++.+. ...+|||+|++
T Consensus 398 ~~~~gf~a~mrVR~S~glkv~~~~G~~-----------~~~~t~~~~l~~i~~d~s~~v~~~~~~~l~~~~~~~~Q~all 466 (751)
T 3eh1_A 398 TRKIGFEAVMRIRCTKGLSMHTFHGNF-----------FVRSTDLLSLANINPDAGFAVQLSIEESLTDTSLVCFQTALL 466 (751)
T ss_dssp HSCCEEEEEEEEEECTTEEEEEEESSS-----------EECSSSEEEEEEECTTCCEEEEEEESSCCCSCSEEEEEEEEE
T ss_pred hhhhccceEEEEEecCCeEEEEeeCCe-----------EeCCCCceEeccCCCCCEEEEEEEEcCCCCCCCceEEEEEEe
Confidence 999999999999999999999999964 344566789999999999999999999876 47899999999
Q ss_pred EEecCCcEEEEEEEeeecccCchHHHHhhcCHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHhcccCCC--C
Q 002987 594 YSNVYQADISRVVTVRLPTVDSVSAYLSSFQDEVAAVLIAKRTLLRAKIFSEAIDMRTMIDERVKDIALKFGSQVPK--S 671 (860)
Q Consensus 594 YT~~~G~RriRV~T~~l~vt~~~~~v~~s~D~ea~~~llaK~av~~~~~~~~~~d~r~~Ld~~li~il~~y~~~~~~--~ 671 (860)
||+.+|+|||||||+++++++++.++|+++|+||++++|||+|++++++ +++.|+|+||+++|+++|++||+++.. .
T Consensus 467 YT~~~G~RRiRV~T~~l~vt~~~~~v~~~~DqeA~~~llar~av~~~~~-~~l~d~r~~l~~~li~il~~Yr~~~~~~~~ 545 (751)
T 3eh1_A 467 YTSSKGERRIRVHTLCLPVVSSLADVYAGVDVQAAICLLANMAVDRSVS-SSLSDARDALVNAVVDSLSAYGSTVSNLQH 545 (751)
T ss_dssp EECTTSCEEEEEEEEEEEEECSHHHHHHTBCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHTTCC----
T ss_pred eecCCCCEEEEEEEecccccCCHHHHHHhcCHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 9999999999999999999999999999999999999999999999998 589999999999999999999998753 3
Q ss_pred CccccchhhhHHHHHHHHHccCcCCCC-CCCCchHHHHHHHHHhccCHHHHHHhhcccceeeccC---------CccccC
Q 002987 672 KLYRFPKELSALSELLFHLRRSPLLGN-IIGHDDERSVLRNLFLNASFDLSLRMVAPRCLMYREG---------GTFEEL 741 (860)
Q Consensus 672 ~~l~Lp~~l~~lP~~~~~L~RS~~L~~-~~~spDer~~~~~~l~~~~v~~~l~~iyP~L~~~~~~---------~~~~~l 741 (860)
++|+||++||+||+|||||+||.+|+. +++++|||+|+|++++++++.+++.||||+||++|+. +...++
T Consensus 546 ~~l~lpe~lkllP~~~~~L~Ks~~~~~~~~~s~Der~~~~~~l~~~~~~~~~~~iyP~L~~~h~l~~~~~~~~~~~~~~~ 625 (751)
T 3eh1_A 546 SALMAPSSLKLFPLYVLALLKQKAFRTGTSTRLDDRVYAMCQIKSQPLVHLMKMIHPNLYRIDRLTDEGAVHVNDRIVPQ 625 (751)
T ss_dssp -CCEEEGGGTTHHHHHHHHHTSTTTCCSSCCCHHHHHHHHHHHHHSCHHHHHHHHSCEEEECTTCCSTTCEEETTEEECC
T ss_pred ccccCcHHHHHHHHHHHHHHccHhhcCCCCCChhHHHHHHHHHhCCCHHHHHhhccceEEEeecCccccCcccCCCccCC
Confidence 469999999999999999999999985 7899999999999999999999999999999999952 211123
Q ss_pred C----ccccccCCCcEEEEeCCcEEEEEeCCcccCCccc---------------------hHHHHHHHHHHHHHHHhccC
Q 002987 742 P----AYDLAMQSDKAVVLDHGTDVFIWLGAELAADEGR---------------------SAAALAACRTLAEELSEFRF 796 (860)
Q Consensus 742 P----~~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~~~~~---------------------~~~~l~~~~~~a~~l~~~R~ 796 (860)
| ++..+|++|||||||+|++++||+|++++++... -.+.-+++|+.++.++++|.
T Consensus 626 P~~l~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~~ll~dlFGv~~~~~~~~~~~~lp~~~t~~s~~vr~ii~~lr~~r~ 705 (751)
T 3eh1_A 626 PPLQKLSAEKLTREGAFLMDCGSVFYIWVGKGCDNNFIEDVLGYTNFASIPQKMTHLPELDTLSSERARSFITWLRDSRP 705 (751)
T ss_dssp CCCBCSSGGGCCTTSEEEEECSSEEEEEECTTCCHHHHHHTTCCSSGGGCCSSBCCCCCCSSHHHHHHHHHHHHHHHTSS
T ss_pred CCcccCCHHHcccCCEEEEECCCEEEEEECCCCCHHHHHHHcCCCchhhcCcccccCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 3 2456899999999999999999999999864310 03667899999999999998
Q ss_pred CCcEEEEEecCCC
Q 002987 797 PAPRILAFKVLFC 809 (860)
Q Consensus 797 p~Pr~i~~~qg~s 809 (860)
.+|++++++|+++
T Consensus 706 ~~~~l~vvr~~~~ 718 (751)
T 3eh1_A 706 LSPILHIVKDESP 718 (751)
T ss_dssp SCCEEEEEESSSS
T ss_pred CcceEEEEeCCCc
Confidence 8899888888875
No 6
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=100.00 E-value=1.2e-118 Score=1088.65 Aligned_cols=627 Identities=15% Similarity=0.215 Sum_probs=530.6
Q ss_pred ccccCCCCCCCCeeeeecCccCCCHhhhhcCCCceEEEEccCCCCCC---CCcccCC-CCcccCCCccccccceEEEcCC
Q 002987 140 AAEETMPVGESSCVLFSAHKVLKKKKQANVPSLGFGALVSPGKEVSP---SLQIIQR-DPHRCHNCGAFANIYCKILLGS 215 (860)
Q Consensus 140 ~~~~~~~~~~~~~vR~T~~~iP~t~~~~~~~~lP~g~vv~P~~~~~~---~~p~v~~-~pvRC~~C~AYiNPf~~~~~~~ 215 (860)
++..+..||+++|||+|||+||.+++++++++|||||+|+||++..+ .+|++.. +|+||++|+|||||||+|+.+|
T Consensus 53 ~~~~d~~n~~p~~vR~T~n~iP~t~~~~~~~~lPlg~vv~P~~~~~~~~~~~pvv~~~~pvRC~~CrayiNPf~~~~~~g 132 (810)
T 1pcx_A 53 LVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCRSYMNPFVTFIEQG 132 (810)
T ss_dssp SSCSGGGSCCTTTEEESBSSEESSHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECSCCCCBCTTTCCBCCTTCEEETTT
T ss_pred cccccCCCCCCCceeeecccCCCCHHHHHhCCCCeEEEEecCCccccCCCCCCccCCCCCCccCCccCEecCceEEeCCC
Confidence 44556789999999999999999999999999999999999998632 3566665 4999999999999999999999
Q ss_pred CEEEEccCCCcCCCCccccCC---CccccCCCCCcCCCceeEEecCCCCCCCCCCCCCCCCCcEEEEEECCCC---hhHH
Q 002987 216 GQWQCVICRNLNGSEGEYVAP---SKEELRNFPELSSPMVDYVQTGNNRSSYVPVSDSRMSAPIILVIDECLD---EPHL 289 (860)
Q Consensus 216 ~~W~C~~C~~~N~lp~~Y~~~---~~~d~~~~PEL~~~tvEy~~p~~yr~~~~~~~~~~~~p~~vFvID~S~~---~~~l 289 (860)
++|+||||++.|++|++|+.. .+.|+.+||||+++||||+++++|... .+.+|.||||||+|.+ +|.+
T Consensus 133 ~~W~C~~C~~~N~~P~~y~~~~~~~~~d~~~RpEL~~~tvEy~~p~~y~~~------~p~pp~yvFvIDvs~~av~~g~l 206 (810)
T 1pcx_A 133 RRWRCNFCRLANDVPMQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLR------QPPPATYCFLIDVSQSSIKSGLL 206 (810)
T ss_dssp TEEECTTTCCEEECCGGGGC-----CCCGGGSHHHHCSEEEEECCGGGCSS------CCCCCEEEEEEECSHHHHHHTHH
T ss_pred CEEEccCCCCcCCCchhhccccccCccccccCccccCceEEEEcCchhccC------CCCCcEEEEEEECChHHHhhhHH
Confidence 999999999999999999731 355788999999999999999998211 1367889999999985 4679
Q ss_pred HHHHHHHHHhhhcCCC---CcEEEEEEECCeEEEEecCCCCc--------eeeecccCCCCCCHHHHHHHhhcCCccccc
Q 002987 290 QHLQSSLHAFVESIPP---TARIGIILYGRTVSVYDFSEDSI--------ASSDVLAGDKLPTEDSLKALLYGTGVYLSP 358 (860)
Q Consensus 290 ~~l~~sL~~~L~~Lp~---~~~VGlITFd~~V~vy~l~~~~~--------~~~~V~~g~~~p~~~~l~~l~~~~~~fL~p 358 (860)
+++|++|+++|+.||+ +++|||||||++||||+++.... ..+.+++|..++- ++ ..+.||+|
T Consensus 207 ~~~~~si~~~L~~Lp~~~~~~~VGlITfd~~V~~~~l~~~~~g~k~~~~q~~mlvv~dl~d~f------~P-~~~~~Lv~ 279 (810)
T 1pcx_A 207 ATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPF------LP-RPNSMVVS 279 (810)
T ss_dssp HHHHHHHHHHTTTSCCTTSCCEEEEEEESSSEEEEECCCGGGC-------CEEECCCCTTCC------------TTTSEE
T ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCccccCccccccchhhcccccccccc------CC-Cccccccc
Confidence 9999999999999996 79999999999999999986432 2334443322210 11 12568999
Q ss_pred hhhhHHHHHHHHhhhccCccccccCCCCCchHHHHHHHHHHhcCCCcccccccccCCCCCcEEEEEeCCCCCCCCCCccC
Q 002987 359 MHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGGPNTYGPGSVPH 438 (860)
Q Consensus 359 l~e~~~~i~~lL~~L~~~~~~~~~~~r~r~~G~AL~~A~~lL~~~~~~~~~~~~k~~~~ggrIivF~sGppt~GpG~l~~ 438 (860)
++||++.|+++|++|++.+.+. ....||+|+||++|..+|+. .||||++|++|+||.|||+|+.
T Consensus 280 l~e~~~~i~~lL~~L~~~~~~~--~~~~~a~G~AL~~A~~lL~~--------------~GGrI~~F~sg~pt~GpG~l~~ 343 (810)
T 1pcx_A 280 LKACRQNIETLLTKIPQIFQSN--LITNFALGPALKSAYHLIGG--------------VGGKIIVVSGTLPNLGIGKLQR 343 (810)
T ss_dssp TTTTHHHHHHHHHHHHHHTTTC--CCCCCCHHHHHHHHHHHHTT--------------TCEEEEEEESSCCCSSTTCCCC
T ss_pred HHHHHHHHHHHHHhhhhhccCC--CCCCccHHHHHHHHHHHHHh--------------cCCEEEEEecCCCCCCCCcccc
Confidence 9999999999999999965432 23359999999999999986 5899999999999999999999
Q ss_pred CCCCCCchh------hhHhHHHHHHHHHHHHHhCCcEEEEEeecCCCCCcccchhhhcccccEEEEeCCchh-------H
Q 002987 439 SFSHPNYLH------MEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKASGGVLVLHDDFGE-------A 505 (860)
Q Consensus 439 ~~~~~~~~~------~ek~a~~fY~~La~~~~~~gisVDiF~~~~~~v~la~l~~L~~~TGG~v~~y~~f~~-------~ 505 (860)
+++++..+. ..+++.+||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+. +
T Consensus 344 r~~~~~~~~~ke~~~l~~~a~~fY~~la~~~~~~gi~VDlF~~s~~~~dla~l~~l~~~TGG~v~~y~~F~~~~~~d~~~ 423 (810)
T 1pcx_A 344 RNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVK 423 (810)
T ss_dssp --------------------CCHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEETCCTTSHHHHHH
T ss_pred cccccccCcccchhhhcccchHHHHHHHHHHHHCCeEEEEEEccCCccChHHHHHHHhcCCcEEEEcCCCcchhhHHHHH
Confidence 875432211 226789999999999999999999999999999999999999999999999999963 5
Q ss_pred HHHHHHHHHhcccccceEEEEEecCCeeEEEeeCCCcccccccccccccCcccceeccCCCCceEEEEEEEeccCCCCCc
Q 002987 506 FGVNLQRASTRAAGSHGFLEIRCSDDILVTQIVGPGEEAHIDTHETFKNDAALSIQMPSVEETQSFAVSMENKRDIESNH 585 (860)
Q Consensus 506 f~~dL~r~l~r~~g~~a~lrVR~S~gi~v~~~~G~~~s~~~~~~~~~~~~~~~~i~l~~v~~~~S~~~~~~~~~~~~~~~ 585 (860)
|.+|+.+.+++++||+|+||||||+||+|+++|||+. .++.+.|++++++++++|+|+|++++.++.+.
T Consensus 424 f~~dl~~~l~~~~gf~a~mrVR~S~gl~v~~~~G~~~-----------~~~~~~~~l~~~~~d~s~~v~f~~~~~l~~~~ 492 (810)
T 1pcx_A 424 FSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHFF-----------NRSSDLCAFSTMPRDQSYLFEVNVDESIMADY 492 (810)
T ss_dssp HHHHHHHHHHCCCCEEEEEEEEECTTEEEEEEESSSB-----------CSSSSEEEESSCCSSCCEEEEEEECSCCCSSE
T ss_pred HHHHHHHHhhhhcceeEEEEEEcCCCeEEEEeecCcc-----------ccCcCceEeecCCCCCEEEEEEEeccCCCCCc
Confidence 8899999999999999999999999999999999654 34456789999999999999999999887788
Q ss_pred eEEEEEEEEEecCCcEEEEEEEeeecccCchHHHHhhcCHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHhc
Q 002987 586 VFFQFAIRYSNVYQADISRVVTVRLPTVDSVSAYLSSFQDEVAAVLIAKRTLLRAKIFSEAIDMRTMIDERVKDIALKFG 665 (860)
Q Consensus 586 ~~iQ~al~YT~~~G~RriRV~T~~l~vt~~~~~v~~s~D~ea~~~llaK~av~~~~~~~~~~d~r~~Ld~~li~il~~y~ 665 (860)
+|||||++||+.+|+|||||||++++|++++.++|+++|+||++++|||+|++++++ +++.|+|+||+++|++++..||
T Consensus 493 ~~~Q~allYt~~~G~RRiRV~T~~~~vt~~~~~v~~~~Dqea~~~llar~av~~~~~-~~~~d~r~~l~~~li~il~~Yr 571 (810)
T 1pcx_A 493 CYVQVAVLLSLNNSQRRIRIITLAMPTTESLAEVYASADQLAIASFYNSKAVEKALN-SSLDDARVLINKSVQDILATYK 571 (810)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEEEESCHHHHHHTBCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEEcCCCCEEEEEEecCccccCCHHHHHHhcCHHHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999998 5899999999999999999999
Q ss_pred ccCCC-----CCccccchhhhHHHHHHHHHccCcCCCCCCCCc-hHHHHHHHHHhccCHHHHHHhhcccceeeccC----
Q 002987 666 SQVPK-----SKLYRFPKELSALSELLFHLRRSPLLGNIIGHD-DERSVLRNLFLNASFDLSLRMVAPRCLMYREG---- 735 (860)
Q Consensus 666 ~~~~~-----~~~l~Lp~~l~~lP~~~~~L~RS~~L~~~~~sp-Der~~~~~~l~~~~v~~~l~~iyP~L~~~~~~---- 735 (860)
+.+.. ..+|+||++|++||+|||||+||++|+ ++.++ |||+|++++++++++.+++.||||+||+||+.
T Consensus 572 k~~~~~~~~~~~~l~lp~~lkllP~~~~~L~ks~~l~-~~~~p~Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~ 650 (810)
T 1pcx_A 572 KEIVVSNTAGGAPLRLCANLRMFPLLMHSLTKHMAFR-SGIVPSDHRASALNNLESLPLKYLIKNIYPDVYSLHDMADEA 650 (810)
T ss_dssp HHCC----CCSSCCEEEGGGTTHHHHHHHHHTSTTTC-SSCCCHHHHHHHHHHHHHSCHHHHHHHHSCEEEECTTCCSST
T ss_pred hhcccccCCCCcccccCHHHHHHHHHHHHHhcchhcC-CCCCCccHHHHHHHHHHcCCHHHHHHhccCEEEEeccCcccc
Confidence 98753 235999999999999999999999999 66666 99999999999999999999999999999964
Q ss_pred Ccc---------------ccCCccccccCCCcEEEEeCCcEEEEEeCCcccCCcc---------------------c-hH
Q 002987 736 GTF---------------EELPAYDLAMQSDKAVVLDHGTDVFIWLGAELAADEG---------------------R-SA 778 (860)
Q Consensus 736 ~~~---------------~~lP~~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~~~~---------------------~-~~ 778 (860)
+.. .+++++...|+++|+||||+|+.|++|+|++++++.. . -.
T Consensus 651 g~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~g~yLld~G~~i~lwvg~~~~~~l~~~lFg~~~~~~~~~~~~~lp~~~~~ 730 (810)
T 1pcx_A 651 GLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMGGDAVPALVFDVFGTQDIFDIPIGKQEIPVVENS 730 (810)
T ss_dssp TSBC--------CCBCCCCBCCSSTTSCCTTCEEEEECSSEEEEEECTTCCHHHHHHHHSCSCGGGSCCEECCCCCCSSC
T ss_pred cccccccccccccccccCCcccCCHHHhCcCCEEEEECCCEEEEEeCCCCCHHHHHHHhCCCchhhcCcccccCCcCCCC
Confidence 211 1123355679999999999999999999999875320 0 12
Q ss_pred HHHHHHHHHHHHHHhccC--CCcEEEEEecCC
Q 002987 779 AALAACRTLAEELSEFRF--PAPRILAFKVLF 808 (860)
Q Consensus 779 ~~l~~~~~~a~~l~~~R~--p~Pr~i~~~qg~ 808 (860)
+.-+++|+.++.++++|. .+|++++++|++
T Consensus 731 ~~~~~l~~iI~~lr~~r~~~~~~~l~ivr~~~ 762 (810)
T 1pcx_A 731 EFNQRVRNIINQLRNHDDVITYQSLYIVRGAS 762 (810)
T ss_dssp HHHHHHHHHHHHHHCCSSCCCCCEEEEEECCC
T ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEEecCC
Confidence 566789999999999885 456666666554
No 7
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=100.00 E-value=5.4e-119 Score=1096.22 Aligned_cols=628 Identities=15% Similarity=0.212 Sum_probs=534.1
Q ss_pred cccccCCCCCCCCeeeeecCccCCCHhhhhcCCCceEEEEccCCCCCC---CCcccCC-CCcccCCCccccccceEEEcC
Q 002987 139 HAAEETMPVGESSCVLFSAHKVLKKKKQANVPSLGFGALVSPGKEVSP---SLQIIQR-DPHRCHNCGAFANIYCKILLG 214 (860)
Q Consensus 139 ~~~~~~~~~~~~~~vR~T~~~iP~t~~~~~~~~lP~g~vv~P~~~~~~---~~p~v~~-~pvRC~~C~AYiNPf~~~~~~ 214 (860)
.++..+..||+++|||+|||+||.+++++++++|||||+|+||++..+ .+|++.. +|+||++|+|||||||+|+++
T Consensus 168 ~~~~~d~gn~~p~~vR~T~n~iP~t~~l~~~~~lPlg~vv~P~a~~~~~~~~vpvv~~~~pvRC~rCrAYiNPf~~~~~~ 247 (926)
T 1m2v_B 168 MLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCRSYMNPFVTFIEQ 247 (926)
T ss_dssp SSSCSSSSSCCTTTEEESBSSEESBHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECSCCCCBCSSSCCBCCTTCEEETT
T ss_pred ccccccCCCCCCCceecccccCCCCHHHHHhCCCCeEEEEecCCCcccCCCCCCccCCCCCCccCCccCEecCceEEeCC
Confidence 345667889999999999999999999999999999999999998632 3566665 499999999999999999999
Q ss_pred CCEEEEccCCCcCCCCccccCC---CccccCCCCCcCCCceeEEecCCCCCCCCCCCCCCCCCcEEEEEECCCC---hhH
Q 002987 215 SGQWQCVICRNLNGSEGEYVAP---SKEELRNFPELSSPMVDYVQTGNNRSSYVPVSDSRMSAPIILVIDECLD---EPH 288 (860)
Q Consensus 215 ~~~W~C~~C~~~N~lp~~Y~~~---~~~d~~~~PEL~~~tvEy~~p~~yr~~~~~~~~~~~~p~~vFvID~S~~---~~~ 288 (860)
+++|+||||++.|++|.+|+.. .+.|+.+||||+++||||+++++|... .+.+|.||||||+|.+ +|.
T Consensus 248 g~~W~CnfC~~~N~~P~~Y~~~~~~~~~d~~~RpEL~~~tvEyi~p~ey~~r------~p~ppvyvFvIDvS~~av~~g~ 321 (926)
T 1m2v_B 248 GRRWRCNFCRLANDVPMQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLR------QPPPATYCFLIDVSQSSIKSGL 321 (926)
T ss_dssp TTEEECTTTCCEEECCGGGTTTSTTCGGGGGGSHHHHCSEEEEECCGGGCSS------CCCCCBEEEEEECSHHHHHSCH
T ss_pred CCEEEccCCCCCCCCchhhccccccCccccccCccccCceEEEEcChhhccC------CCCCcEEEEEEECCHHHHhhhH
Confidence 9999999999999999999731 356788999999999999999998211 1367889999999985 457
Q ss_pred HHHHHHHHHHhhhcCCC---CcEEEEEEECCeEEEEecCCCCc--------eeeecccCCCCCCHHHHHHHhhcCCcccc
Q 002987 289 LQHLQSSLHAFVESIPP---TARIGIILYGRTVSVYDFSEDSI--------ASSDVLAGDKLPTEDSLKALLYGTGVYLS 357 (860)
Q Consensus 289 l~~l~~sL~~~L~~Lp~---~~~VGlITFd~~V~vy~l~~~~~--------~~~~V~~g~~~p~~~~l~~l~~~~~~fL~ 357 (860)
++++|++|+++|+.||+ +++|||||||++||||+++.+.. ..+.+++|..++- ++ ..+.||+
T Consensus 322 l~~l~~sI~~~L~~LP~~~~~~~VGlITFds~Vh~y~l~~~~~g~k~~~~q~qmlvvsdl~d~f------~P-~~~~~Lv 394 (926)
T 1m2v_B 322 LATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPF------LP-RPNSMVV 394 (926)
T ss_dssp HHHHHHHHHHTTTTSCCTTSCCEECEEEESSSEEEEECCCC---------CCEEEEECCCSSCC------CS-CSSSSSE
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCCcccCCcccccchhhcccccccccc------CC-Ccccccc
Confidence 99999999999999996 79999999999999999986532 2334443322110 00 1256899
Q ss_pred chhhhHHHHHHHHhhhccCccccccCCCCCchHHHHHHHHHHhcCCCcccccccccCCCCCcEEEEEeCCCCCCCCCCcc
Q 002987 358 PMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGGPNTYGPGSVP 437 (860)
Q Consensus 358 pl~e~~~~i~~lL~~L~~~~~~~~~~~r~r~~G~AL~~A~~lL~~~~~~~~~~~~k~~~~ggrIivF~sGppt~GpG~l~ 437 (860)
|++||++.|+++|++|++.+.+. ....||+|+||++|..+|+. .||||++|++|+||.|||+|+
T Consensus 395 ~l~e~~~~I~~lLe~L~~~~~~~--~~~~~~~G~AL~aA~~lL~~--------------~GGrI~~F~sg~Pt~GpG~l~ 458 (926)
T 1m2v_B 395 SLKACRQNIETLLTKIPQIFQSN--LITNFALGPALKSAYHLIGG--------------VGGKIIVVSGTLPNLGIGKLQ 458 (926)
T ss_dssp ETTTTHHHHHHHHHHHHHHTSSC--CCCCCCHHHHHHHHHHHHTT--------------TCEEEEEEESSCCCSSTTCCC
T ss_pred cHHHHHHHHHHHHHhhhhhhcCC--CCCCccHHHHHHHHHHHHHh--------------hCCEEEEEecCCCCCCCCccc
Confidence 99999999999999999965432 23459999999999999986 589999999999999999999
Q ss_pred CCCCCCCchh------hhHhHHHHHHHHHHHHHhCCcEEEEEeecCCCCCcccchhhhcccccEEEEeCCchh-------
Q 002987 438 HSFSHPNYLH------MEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKASGGVLVLHDDFGE------- 504 (860)
Q Consensus 438 ~~~~~~~~~~------~ek~a~~fY~~La~~~~~~gisVDiF~~~~~~v~la~l~~L~~~TGG~v~~y~~f~~------- 504 (860)
.+++++..++ ..+++.+||++||++|+++||+||||+++.+|+|+++|+.|++.|||.+++|++|+.
T Consensus 459 ~re~~~~~~~~ke~~~ll~~a~~FYk~LA~~~~~~gisVDlF~~s~~~vdla~l~~l~~~TGG~v~~y~~F~~~~~~d~~ 538 (926)
T 1m2v_B 459 RRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIV 538 (926)
T ss_dssp CCCC----CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEESCCTTSHHHHH
T ss_pred ccccccccCcccchhhhccchHHHHHHHHHHHHHcCeEEEEEEccCCCcChHHHHHHHhcCCceEEEcCCCcchhhhHHH
Confidence 9876533221 225789999999999999999999999999999999999999999999999999962
Q ss_pred HHHHHHHHHHhcccccceEEEEEecCCeeEEEeeCCCcccccccccccccCcccceeccCCCCceEEEEEEEeccCCCCC
Q 002987 505 AFGVNLQRASTRAAGSHGFLEIRCSDDILVTQIVGPGEEAHIDTHETFKNDAALSIQMPSVEETQSFAVSMENKRDIESN 584 (860)
Q Consensus 505 ~f~~dL~r~l~r~~g~~a~lrVR~S~gi~v~~~~G~~~s~~~~~~~~~~~~~~~~i~l~~v~~~~S~~~~~~~~~~~~~~ 584 (860)
+|..|+.+.+++++||+|+||||||+||+|+++|||+. .++.+.|+++++++++||+|+|++++.++.+
T Consensus 539 kf~~dl~~~Lt~~~gf~a~mrVR~S~glkv~~~~G~~~-----------~~~s~~~~l~~l~~d~s~av~f~~~~~l~~~ 607 (926)
T 1m2v_B 539 KFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHFF-----------NRSSDLCAFSTMPRDQSYLFEVNVDESIMAD 607 (926)
T ss_dssp HHHHHHHHHHHSCCEEEEEEEEEECTTEEEEEEESSSB-----------CSSTTEEEEEEECSSCCEEEEEEECSBCCSS
T ss_pred HHHHHHHHHhhhhhceeEEEEEEeCCCcEEEEeecCcc-----------ccCcCceEeeccCCCCEEEEEEEeccCCCCC
Confidence 58899999999999999999999999999999999654 3445678999999999999999999988778
Q ss_pred ceEEEEEEEEEecCCcEEEEEEEeeecccCchHHHHhhcCHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHh
Q 002987 585 HVFFQFAIRYSNVYQADISRVVTVRLPTVDSVSAYLSSFQDEVAAVLIAKRTLLRAKIFSEAIDMRTMIDERVKDIALKF 664 (860)
Q Consensus 585 ~~~iQ~al~YT~~~G~RriRV~T~~l~vt~~~~~v~~s~D~ea~~~llaK~av~~~~~~~~~~d~r~~Ld~~li~il~~y 664 (860)
.+|||||++||+.+|+|||||||++++|++++.++|+++|+||++++|||+|++++++ +++.|+|+||+++|++++..|
T Consensus 608 ~~~~Q~allYT~~~G~RRiRV~T~~l~vt~~l~~v~~s~Dqea~~~llar~av~~~~~-~~~~d~r~~L~~~li~il~~Y 686 (926)
T 1m2v_B 608 YCYVQVAVLLSLNNSQRRIRIITLAMPTTESLAEVYASADQLAIASFYNSKAVEKALN-SSLDDARVLINKSVQDILATY 686 (926)
T ss_dssp EEEEEEEEEEEETTTEEEEEEEEEEEEEESCHHHHHHTBCHHHHHHHHHHHHHHHHHH-SCSHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEEEEEcCCCCEEEEEEeecccccCCHHHHHHhcCHHHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999998 489999999999999999999
Q ss_pred cccCCC-----CCccccchhhhHHHHHHHHHccCcCCCCCCCCc-hHHHHHHHHHhccCHHHHHHhhcccceeeccC---
Q 002987 665 GSQVPK-----SKLYRFPKELSALSELLFHLRRSPLLGNIIGHD-DERSVLRNLFLNASFDLSLRMVAPRCLMYREG--- 735 (860)
Q Consensus 665 ~~~~~~-----~~~l~Lp~~l~~lP~~~~~L~RS~~L~~~~~sp-Der~~~~~~l~~~~v~~~l~~iyP~L~~~~~~--- 735 (860)
|+.+.. ..+|+||++||+||+||||||||++|+ ++.++ |||+|++++++++++.+++.||||+||+||+.
T Consensus 687 rk~~~~~~~~~~~sl~Lp~~lkllP~~~~~L~KS~~l~-~~~~p~Dera~~~~~l~~~~~~~l~~~iyP~L~s~h~~~~~ 765 (926)
T 1m2v_B 687 KKEIVVSNTAGGAPLRLCANLRMFPLLMHSLTKHMAFR-SGIVPSDHRASALNNLESLPLKYLIKNIYPDVYSLHDMADE 765 (926)
T ss_dssp HHHTCCCTTSSSSCCEEEGGGTTHHHHHHHHHTSTTTC-SSCCCHHHHHHHHHHHHHSCHHHHHHHHSCEEEETTTCCSS
T ss_pred hhhcccccCCCCcccccCHHHHHHHHHHHHHhcchhhC-CCCCCccHHHHHHHHHHcCCHHHHHHhccCeEEEeccCccc
Confidence 998754 135999999999999999999999999 66666 99999999999999999999999999999964
Q ss_pred -Ccc---------------ccCCccccccCCCcEEEEeCCcEEEEEeCCcccCCccc--h--------------------
Q 002987 736 -GTF---------------EELPAYDLAMQSDKAVVLDHGTDVFIWLGAELAADEGR--S-------------------- 777 (860)
Q Consensus 736 -~~~---------------~~lP~~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~~~~~--~-------------------- 777 (860)
+.. .+++++...|+++|+||||+|..|++|+|+.++++... |
T Consensus 766 ~g~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~g~yLld~G~~i~lWvG~~~~p~ll~dlFg~~~~~~i~~~~~~lp~l~~ 845 (926)
T 1m2v_B 766 AGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMGGDAVPALVFDVFGTQDIFDIPIGKQEIPVVEN 845 (926)
T ss_dssp CSCC---------CCCCCCCCBCSCSTTCCTTCEEEEECSSEEEEEECTTCCSGGGC-----------------------
T ss_pred ccccccccccccccccccCCcccCcHHHhccCCEEEEECCCEEEEEecCCCCHHHHHHHhCCCchhhcCcccccCccCCC
Confidence 211 11233556799999999999999999999999865421 0
Q ss_pred HHHHHHHHHHHHHHHhccC--CCcEEEEEecCC
Q 002987 778 AAALAACRTLAEELSEFRF--PAPRILAFKVLF 808 (860)
Q Consensus 778 ~~~l~~~~~~a~~l~~~R~--p~Pr~i~~~qg~ 808 (860)
.+.-+++|++++.|++.|. .+++++++++++
T Consensus 846 ~~~s~~lr~iI~~lr~~r~~~~~~~l~ivr~~~ 878 (926)
T 1m2v_B 846 SEFNQRVRNIINQLRNHDDVITYQSLYIVRGAS 878 (926)
T ss_dssp --CHHHHHHHHHHTTCCSSCCCCCEEEEEC---
T ss_pred ChHHHHHHHHHHHHHHhCCCCCCceEEEEecCC
Confidence 1223578889999998885 456666665543
No 8
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=99.57 E-value=6e-16 Score=125.66 Aligned_cols=50 Identities=24% Similarity=0.504 Sum_probs=45.4
Q ss_pred cCCCCcccCC--CccccccceEEEcCCCEEEEccCCCcCCCCccccCCCccc
Q 002987 191 IQRDPHRCHN--CGAFANIYCKILLGSGQWQCVICRNLNGSEGEYVAPSKEE 240 (860)
Q Consensus 191 v~~~pvRC~~--C~AYiNPf~~~~~~~~~W~C~~C~~~N~lp~~Y~~~~~~d 240 (860)
.+++|+||++ |+|||||||+|+.++++|+|+||++.|++|++|+.++.++
T Consensus 5 ~~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~~Y~~is~~n 56 (59)
T 2yrc_A 5 SSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELN 56 (59)
T ss_dssp SCCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCSCCSSCHHHH
T ss_pred CCCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCHHHhccCccc
Confidence 4578999999 9999999999999999999999999999999998765443
No 9
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=99.27 E-value=8.5e-09 Score=118.48 Aligned_cols=312 Identities=11% Similarity=0.051 Sum_probs=190.1
Q ss_pred cEEEEEECCCC----hhHHHHHHHHHHHhhhcCCCCcEEEEEEECCeEEEEecCCCCceeeecccCCCCCCHHHHHHHhh
Q 002987 275 PIILVIDECLD----EPHLQHLQSSLHAFVESIPPTARIGIILYGRTVSVYDFSEDSIASSDVLAGDKLPTEDSLKALLY 350 (860)
Q Consensus 275 ~~vFvID~S~~----~~~l~~l~~sL~~~L~~Lp~~~~VGlITFd~~V~vy~l~~~~~~~~~V~~g~~~p~~~~l~~l~~ 350 (860)
.++||||+|.+ ...++.+|+++...++.|+++.+||||+|++.++.+--....
T Consensus 79 dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~~~~p~t~~----------------------- 135 (464)
T 4fx5_A 79 VEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVVYPTGGQ----------------------- 135 (464)
T ss_dssp EEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEEEEESSSSS-----------------------
T ss_pred eEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceEEEecCCcc-----------------------
Confidence 36999999975 346999999999999999999999999999887754211000
Q ss_pred cCCccccch-hhhHHHHHHHHhhhccCccccccCCCCCchHHHHHHHHHHhcCCCcccccccccCCCCCcEEEEEeCCCC
Q 002987 351 GTGVYLSPM-HASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGGPN 429 (860)
Q Consensus 351 ~~~~fL~pl-~e~~~~i~~lL~~L~~~~~~~~~~~r~r~~G~AL~~A~~lL~~~~~~~~~~~~k~~~~ggrIivF~sGpp 429 (860)
+.+. ...+..+...|+.|.. ...+.++.||..|..++... .+....|+++++|.+
T Consensus 136 -----l~~~~~~~~~~l~~~I~~L~~--------~GgT~l~~aL~~A~~~l~~~-----------~~~~~~IILLTDG~~ 191 (464)
T 4fx5_A 136 -----LLRADYQSRAAAKEAVGRLHA--------NGGTAMGRWLAQAGRIFDTA-----------PSAIKHAILLTDGKD 191 (464)
T ss_dssp -----CEECSHHHHHHHHHHHHTCCC--------CSCCCHHHHHHHHHHHHTTC-----------TTSEEEEEEEESSCC
T ss_pred -----cccCCHHHHHHHHHHHHcCCC--------CCCCcHHHHHHHHHHHHhcC-----------CCCCCEEEEEcCCCC
Confidence 0111 1234455556666653 23488999999999999752 112357888899987
Q ss_pred CCCCCCccCCCCCCCchhhhHhHHHHHHHHHHHHHhCCcEEEEEeecCCCCCcccchhhhcccccEEEEeCCchh---HH
Q 002987 430 TYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKASGGVLVLHDDFGE---AF 506 (860)
Q Consensus 430 t~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~~~~~v~la~l~~L~~~TGG~v~~y~~f~~---~f 506 (860)
+.+. . ....+ +.++...++.|..|.++.+ .|-..|..+++.|||..++.++..+ .|
T Consensus 192 ~~~~-----------~-------~~l~~--~~~a~~~~i~i~tiGiG~~-~d~~~L~~IA~~tgG~~~~v~d~~~L~~~f 250 (464)
T 4fx5_A 192 ESET-----------P-------ADLAR--AIQSSIGNFTADCRGIGED-WEPKELRKIADALLGTVGIIRDPATLAEDF 250 (464)
T ss_dssp TTSC-----------H-------HHHHH--HHHHHTTTCEEEEEEESSS-SCHHHHHHHHHHTTCCEEEESSGGGHHHHH
T ss_pred CCCC-----------h-------HHHHH--HHHHhcCCCeEEEEEeCCc-cCHHHHHHHHHhCCCEEEEcCCHHHHHHHH
Confidence 6421 0 01111 2234467888888888754 6778999999999999999988764 34
Q ss_pred HHHHHHHHhcccccceEEEEEecCCeeEEEeeC--CCcccccccccccccCcccceeccCC-CCceEEEEEEEeccCCCC
Q 002987 507 GVNLQRASTRAAGSHGFLEIRCSDDILVTQIVG--PGEEAHIDTHETFKNDAALSIQMPSV-EETQSFAVSMENKRDIES 583 (860)
Q Consensus 507 ~~dL~r~l~r~~g~~a~lrVR~S~gi~v~~~~G--~~~s~~~~~~~~~~~~~~~~i~l~~v-~~~~S~~~~~~~~~~~~~ 583 (860)
.+.+.++ .....-++.+++++..|+.+..+.. |....-............+.+.++.+ +....|-+++.+.....+
T Consensus 251 ~~i~~~~-~s~~~~dv~l~l~~~~g~~v~~v~~v~P~~~~l~~~~~~~~~~~~~~v~lG~l~~e~r~~lv~l~v~~~~~g 329 (464)
T 4fx5_A 251 REMTAKS-MGKEVADVALRLWAPKGATIRYVKQVSPNLADLSGMRVPGDNPLTGDYPTGAWGAESREYHICVEVEPGNIG 329 (464)
T ss_dssp HHHHHHH-HTCCEEEEEEEEECCTTCEEEEEEEEESBCEECGGGCEECSSTTEEEEEEEEESSEEEEEEEEEECCCCCTT
T ss_pred HHHHHHh-hchheeeeEEEEEeCCCcEEEEEEeecccccccCcccccCCCCcEEEEECCcCCCCeEEEEEEEEcCCCCCC
Confidence 4444333 3456788999999999998876532 11100000000000111345666666 223446666666554444
Q ss_pred CceE-EEEEEEEEecCCcEEEEEEEeeecccCchH-------HHHhhcCHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q 002987 584 NHVF-FQFAIRYSNVYQADISRVVTVRLPTVDSVS-------AYLSSFQDEVAAVLIAKRTLLRAKIFSEAIDMRTMIDE 655 (860)
Q Consensus 584 ~~~~-iQ~al~YT~~~G~RriRV~T~~l~vt~~~~-------~v~~s~D~ea~~~llaK~av~~~~~~~~~~d~r~~Ld~ 655 (860)
...- .++.+.|.+..|++.+.=..+.+.|+.+.. +|.+...+-.++..+ +++...+.. .+...|.+.|.+
T Consensus 330 ~~~~~~~v~~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~V~~~~~~~~~a~~~-~~a~~~~~~-gd~~~A~~~L~~ 407 (464)
T 4fx5_A 330 QEKLAGRVQLVAKDAGGATLLGEGKIRAVWTEDTDLSTRINGRVAHYTGQAEMAAAI-QEGLDAQAA-GDLDTATARLGR 407 (464)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEEECSCHHHHSCCCHHHHHHHHHHHHHHHH-HHHHHHHHT-TCHHHHHHHHHH
T ss_pred ceeEEEEEEEEEcCCCccccccccceEEEEEccccccCCCCHHHHHHHHHHHHHHHH-HHHHHHHHc-CCHHHHHHHHHH
Confidence 4444 799999999888733222344555655432 233333333333332 233333333 467777776655
Q ss_pred HH
Q 002987 656 RV 657 (860)
Q Consensus 656 ~l 657 (860)
..
T Consensus 408 A~ 409 (464)
T 4fx5_A 408 AM 409 (464)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 10
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.86 E-value=9.3e-08 Score=97.80 Aligned_cols=168 Identities=18% Similarity=0.298 Sum_probs=119.9
Q ss_pred CCcEEEEEECCCCh-------hHHHHHHHHHHHhhhcCCCCcEEEEEEECCeEEEEecCCCCceeeecccCCCCCCHHHH
Q 002987 273 SAPIILVIDECLDE-------PHLQHLQSSLHAFVESIPPTARIGIILYGRTVSVYDFSEDSIASSDVLAGDKLPTEDSL 345 (860)
Q Consensus 273 ~p~~vFvID~S~~~-------~~l~~l~~sL~~~L~~Lp~~~~VGlITFd~~V~vy~l~~~~~~~~~V~~g~~~p~~~~l 345 (860)
+..++||||+|.+- ..++.+++.+...++.++ +.+||||+|++..++.-
T Consensus 11 ~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~-~~~v~lv~F~~~~~~~~----------------------- 66 (218)
T 3ibs_A 11 GVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELD-NDKVGMIVFAGDAFTQL----------------------- 66 (218)
T ss_dssp CCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCS-SCEEEEEEESSSEEEEE-----------------------
T ss_pred CCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhCC-CCeEEEEEECCCceEeC-----------------------
Confidence 35689999999762 278999999999999997 78999999997765321
Q ss_pred HHHhhcCCccccchhhhHHHHHHHHhhhccCccccccCCCCCchHHHHHHHHHHhcCCCcccccccccCCCCCcEEEEEe
Q 002987 346 KALLYGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCA 425 (860)
Q Consensus 346 ~~l~~~~~~fL~pl~e~~~~i~~lL~~L~~~~~~~~~~~r~r~~G~AL~~A~~lL~~~~~~~~~~~~k~~~~ggrIivF~ 425 (860)
|+......+..+|+.|..... ....+.++.||..|..++... .+....|++++
T Consensus 67 ------------~~~~~~~~~~~~l~~l~~~~~----~~g~T~l~~al~~a~~~l~~~-----------~~~~~~ivllT 119 (218)
T 3ibs_A 67 ------------PITSDYISAKMFLESISPSLI----SKQGTAIGEAINLATRSFTPQ-----------EGVGRAIIVIT 119 (218)
T ss_dssp ------------EEESCHHHHHHHHHTCCGGGC----CSCSCCHHHHHHHHHTTSCSC-----------SSCCEEEEEEE
T ss_pred ------------CCCCCHHHHHHHHHhcCcccC----CCCCCcHHHHHHHHHHHHhhC-----------CCCCcEEEEEc
Confidence 111223344556666654211 124589999999999998752 12346888889
Q ss_pred CCCCCCCCCCccCCCCCCCchhhhHhHHHHHHHHHHHHHhCCcEEEEEeecCC------------------------CCC
Q 002987 426 GGPNTYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNC------------------------PVR 481 (860)
Q Consensus 426 sGppt~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~~~~------------------------~v~ 481 (860)
+|.++.| . ..+.+..+.+.||.|..+.++.. ..+
T Consensus 120 DG~~~~~--~--------------------~~~~~~~~~~~~i~v~~igig~~~~~~~~~~g~~~~~~~~~g~~~~~~~~ 177 (218)
T 3ibs_A 120 DGENHEG--G--------------------AVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTNDYRRDREGNVIVTRLN 177 (218)
T ss_dssp CCTTCCS--C--------------------HHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCBCBCTTSCBCEECCC
T ss_pred CCCCCCC--c--------------------HHHHHHHHHhcCCEEEEEEecCCCCCcccccCCCceeEcCCCCEeEecCC
Confidence 9987654 0 13466677889999999988864 467
Q ss_pred cccchhhhcccccEEEEeCCchh---HHHHHHHHH
Q 002987 482 VPVLQPLAKASGGVLVLHDDFGE---AFGVNLQRA 513 (860)
Q Consensus 482 la~l~~L~~~TGG~v~~y~~f~~---~f~~dL~r~ 513 (860)
...|+.+|+.|||..++..+-.+ .+.+.|.++
T Consensus 178 ~~~L~~iA~~~gG~~~~~~~~~~~~~~~~~~i~~l 212 (218)
T 3ibs_A 178 EGMCQEIAKDGKGIYVRVDNSNSAQKAISQEISKM 212 (218)
T ss_dssp HHHHHHHHHHTEEEEEEECSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEECCCChHHHHHHHHHHHHh
Confidence 77899999999999999887332 344555444
No 11
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=98.55 E-value=2.8e-06 Score=86.30 Aligned_cols=162 Identities=10% Similarity=0.161 Sum_probs=106.3
Q ss_pred CcEEEEEECCCC--hhHHHHHHHHHHHhhhcCC---CCcEEEEEEECCeEEEE-ecCCCCceeeecccCCCCCCHHHHHH
Q 002987 274 APIILVIDECLD--EPHLQHLQSSLHAFVESIP---PTARIGIILYGRTVSVY-DFSEDSIASSDVLAGDKLPTEDSLKA 347 (860)
Q Consensus 274 p~~vFvID~S~~--~~~l~~l~~sL~~~L~~Lp---~~~~VGlITFd~~V~vy-~l~~~~~~~~~V~~g~~~p~~~~l~~ 347 (860)
--++||||.|.+ ...++.+|+.++..++.|. ++.|||+|+|++..+.. .+.. +
T Consensus 14 ~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~~~l~~--------------~------- 72 (202)
T 1ijb_A 14 LDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLKD--------------R------- 72 (202)
T ss_dssp EEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEECTTC--------------C-------
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEEEecCC--------------C-------
Confidence 346999999975 5578999999999999886 67899999999877542 1210 0
Q ss_pred HhhcCCccccchhhhHHHHHHHHhhhccCccccccCCCCCchHHHHHHHHH-HhcCCCcccccccccCCCCCcEEEEEeC
Q 002987 348 LLYGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALA-IIQGPSAEMSRGVVKRPGGNSRIIVCAG 426 (860)
Q Consensus 348 l~~~~~~fL~pl~e~~~~i~~lL~~L~~~~~~~~~~~r~r~~G~AL~~A~~-lL~~~~~~~~~~~~k~~~~ggrIivF~s 426 (860)
..++.+...|+.|+.. +...+.+|.||..|.. ++.... +.+..-.|+++++
T Consensus 73 -------------~~~~~~~~~i~~l~~~------gg~~T~~~~aL~~a~~~~~~~~~---------r~~~~~~iillTD 124 (202)
T 1ijb_A 73 -------------KRPSELRRIASQVKYA------GSQVASTSEVLKYTLFQIFSKID---------RPEASRIALLLMA 124 (202)
T ss_dssp -------------CCHHHHHHHHHTCCCC------CBSCCCHHHHHHHHHHHTSSSCS---------CTTSEEEEEEEEC
T ss_pred -------------CCHHHHHHHHHhCcCC------CCCcCcHHHHHHHHHHHHhccCC---------CCCCCeEEEEEcc
Confidence 1123344455666542 1223889999999974 444210 0112235778888
Q ss_pred CCCCCCCCCccCCCCCCCchhhhHhHHHHHHHHHHHHHhCCcEEEEEeecCCCCCcccchhhhcc-cccEEEEeCCchh
Q 002987 427 GPNTYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKA-SGGVLVLHDDFGE 504 (860)
Q Consensus 427 Gppt~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~~~~~v~la~l~~L~~~-TGG~v~~y~~f~~ 504 (860)
|.++.|.. .. ..+.++++.+.||.|-.+.++. .++..+|..++.. +||.+|..++|++
T Consensus 125 G~~~~~~~-----------~~--------~~~~a~~l~~~gi~i~~igvG~-~~~~~~L~~iA~~~~~~~~~~~~~~~~ 183 (202)
T 1ijb_A 125 SQEPQRMS-----------RN--------FVRYVQGLKKKKVIVIPVGIGP-HANLKQIRLIEKQAPENKAFVLSSVDE 183 (202)
T ss_dssp CCCCGGGC-----------TT--------HHHHHHHHHHTTEEEEEEEEST-TSCHHHHHHHHHHCTTCCCEEESSGGG
T ss_pred CCCCccch-----------HH--------HHHHHHHHHHCCCEEEEEecCC-cCCHHHHHHHhCCCCcccEEEeCCHHH
Confidence 87753200 00 1234566677888776666654 4678899999985 6889999999875
No 12
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.49 E-value=6.9e-07 Score=94.82 Aligned_cols=148 Identities=17% Similarity=0.194 Sum_probs=104.1
Q ss_pred cEEEEEECCCCh-------hHHHHHHHHHHHhhhc---CCCCcEEEEEEECC-eEEEEecCCCCceeeecccCCCCCCHH
Q 002987 275 PIILVIDECLDE-------PHLQHLQSSLHAFVES---IPPTARIGIILYGR-TVSVYDFSEDSIASSDVLAGDKLPTED 343 (860)
Q Consensus 275 ~~vFvID~S~~~-------~~l~~l~~sL~~~L~~---Lp~~~~VGlITFd~-~V~vy~l~~~~~~~~~V~~g~~~p~~~ 343 (860)
.+|||||+|... ..+++.++++...++. ..+..+||||+|.. ...+
T Consensus 5 AtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~v----------------------- 61 (268)
T 4b4t_W 5 ATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRV----------------------- 61 (268)
T ss_dssp EEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEE-----------------------
T ss_pred eEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCccee-----------------------
Confidence 469999999752 3688888888777664 45688999999953 2222
Q ss_pred HHHHHhhcCCccccchhhhHHHHHHHHhhhccCccccccCCCCCchHHHHHHHHHHhcCCCcccccccccCCCCCcEEEE
Q 002987 344 SLKALLYGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIV 423 (860)
Q Consensus 344 ~l~~l~~~~~~fL~pl~e~~~~i~~lL~~L~~~~~~~~~~~r~r~~G~AL~~A~~lL~~~~~~~~~~~~k~~~~ggrIiv 423 (860)
+.|+......|...|+.|+. ...+.++.||+.|..+|++... .+..-||++
T Consensus 62 ------------l~plT~D~~~il~aL~~l~~--------~G~T~l~~gL~~A~~aLk~~~~---------k~~~~rIIl 112 (268)
T 4b4t_W 62 ------------LSTFTAEFGKILAGLHDTQI--------EGKLHMATALQIAQLTLKHRQN---------KVQHQRIVA 112 (268)
T ss_dssp ------------EEEEESCHHHHHHHHTTCCC--------CSCCCHHHHHHHHHHHHHTCSC---------TTSEEEEEE
T ss_pred ------------ccCCcchHHHHHHHhhhcCc--------CCCCChHHHHHHHHHHHHhccc---------CCCceEEEE
Confidence 12233344555666666654 2348899999999999987421 123458999
Q ss_pred EeCCCCCCCCCCccCCCCCCCchhhhHhHHHHHHHHHHHHHhCCcEEEEEeecCCCCCcccchhhhccccc
Q 002987 424 CAGGPNTYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKASGG 494 (860)
Q Consensus 424 F~sGppt~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~~~~~v~la~l~~L~~~TGG 494 (860)
|++|+-+. + .+-..++++++.++||.||++.++.+..+-..|..+++..+|
T Consensus 113 f~ds~~~~------------~--------~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~Ng 163 (268)
T 4b4t_W 113 FVCSPISD------------S--------RDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNN 163 (268)
T ss_dssp EECSCCSS------------C--------HHHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHHHCS
T ss_pred EECCCCCC------------C--------HHHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHHhcC
Confidence 99986321 0 122367899999999999999999876677888888776654
No 13
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=98.45 E-value=3e-06 Score=85.67 Aligned_cols=171 Identities=15% Similarity=0.163 Sum_probs=108.9
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHhhhcCC---CCcEEEEEEECCeEEEE-ecCCCCceeeecccCCCCCCHHHHHHHh
Q 002987 274 APIILVIDECLDEPHLQHLQSSLHAFVESIP---PTARIGIILYGRTVSVY-DFSEDSIASSDVLAGDKLPTEDSLKALL 349 (860)
Q Consensus 274 p~~vFvID~S~~~~~l~~l~~sL~~~L~~Lp---~~~~VGlITFd~~V~vy-~l~~~~~~~~~V~~g~~~p~~~~l~~l~ 349 (860)
.-++||||+|.+-..++.+|+.+...++.+. ++.+||+|+|++..++. .+.. +
T Consensus 7 ~div~vlD~SgSm~~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~~~l~~--------------~--------- 63 (200)
T 1v7p_C 7 IDVVVVCDESNSIYPWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLNT--------------Y--------- 63 (200)
T ss_dssp EEEEEEEECCTTCCCHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEECTTT--------------C---------
T ss_pred ccEEEEEECCCCcccHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEEEeCCC--------------c---------
Confidence 4579999999875458889999999998885 78999999999877542 1110 0
Q ss_pred hcCCccccchhhhHHHHHHHHhhhccCccccccCCCCCchHHHHHHHHHH-hcCCCcccccccccCCCCCcEEEEEeCCC
Q 002987 350 YGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAI-IQGPSAEMSRGVVKRPGGNSRIIVCAGGP 428 (860)
Q Consensus 350 ~~~~~fL~pl~e~~~~i~~lL~~L~~~~~~~~~~~r~r~~G~AL~~A~~l-L~~~~~~~~~~~~k~~~~ggrIivF~sGp 428 (860)
..+..+.+.|+.|... +...+.+|.||..|... +.... + .+.+....|+++++|.
T Consensus 64 -----------~~~~~~~~~i~~l~~~------~G~~T~~~~al~~a~~~~~~~~~-----g--~r~~~~~~ivllTDG~ 119 (200)
T 1v7p_C 64 -----------KTKEEMIVATSQTSQY------GGDLTNTFGAIQYARKYAYSAAS-----G--GRRSATKVMVVVTDGE 119 (200)
T ss_dssp -----------SSHHHHHHHHHHCCCC------CCSCCCHHHHHHHHHHHTTSGGG-----T--CCTTSEEEEEEEESSC
T ss_pred -----------CCHHHHHHHHHhhhcc------CCCCCcHHHHHHHHHHhhccccc-----C--CCCCCCeEEEEEccCC
Confidence 1122233445555431 11248899999999985 43210 0 0011223588889998
Q ss_pred CCCCCCCccCCCCCCCchhhhHhHHHHHHHHHHHHHhCCcEEEEEeecC----CCCC----cccchhhhcccccE-EEEe
Q 002987 429 NTYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGN----CPVR----VPVLQPLAKASGGV-LVLH 499 (860)
Q Consensus 429 pt~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~~~----~~v~----la~l~~L~~~TGG~-v~~y 499 (860)
++.+. . .++.++++.+.||.|..+.++. ..++ ..+|+.++..|||. +|..
T Consensus 120 ~~~~~-------------~--------~~~~~~~~~~~gi~i~~igvg~~~~~~~~~~~~~~~~L~~iA~~~~g~~~~~~ 178 (200)
T 1v7p_C 120 SHDGS-------------M--------LKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFNV 178 (200)
T ss_dssp CSCGG-------------G--------HHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEE
T ss_pred CCCcc-------------c--------HHHHHHHHHHCCCEEEEEEecccccccccchhhHHHHHHHHhCCccHhcEEEc
Confidence 75311 0 1345667778898887777732 3445 56799999999885 5677
Q ss_pred CCchh--HHHHHHHH
Q 002987 500 DDFGE--AFGVNLQR 512 (860)
Q Consensus 500 ~~f~~--~f~~dL~r 512 (860)
+++++ .+...|.+
T Consensus 179 ~~~~~l~~i~~~i~~ 193 (200)
T 1v7p_C 179 SDEAALLEKAGTLGE 193 (200)
T ss_dssp SSSGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 78864 33344433
No 14
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.41 E-value=7.4e-06 Score=83.64 Aligned_cols=177 Identities=13% Similarity=0.149 Sum_probs=108.5
Q ss_pred CcEEEEEECCCC--hhHHHHHHHHHHHhhhcC---CCCcEEEEEEECCeEEEE-ecCCCCceeeecccCCCCCCHHHHHH
Q 002987 274 APIILVIDECLD--EPHLQHLQSSLHAFVESI---PPTARIGIILYGRTVSVY-DFSEDSIASSDVLAGDKLPTEDSLKA 347 (860)
Q Consensus 274 p~~vFvID~S~~--~~~l~~l~~sL~~~L~~L---p~~~~VGlITFd~~V~vy-~l~~~~~~~~~V~~g~~~p~~~~l~~ 347 (860)
.-++||||+|.+ ...++.+++.+...++.| +.+.+||||+|++.++.. .+.
T Consensus 16 ~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~~~~----------------------- 72 (223)
T 1q0p_A 16 MNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVS----------------------- 72 (223)
T ss_dssp EEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEECTT-----------------------
T ss_pred eeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceeeccc-----------------------
Confidence 457999999975 456888888888886654 467899999999877542 110
Q ss_pred HhhcCCccccchhhhHHHHHHHHhhhccCccccccCCCCCchHHHHHHHHHHhcCCCcccccccccCCCCCcEEEEEeCC
Q 002987 348 LLYGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGG 427 (860)
Q Consensus 348 l~~~~~~fL~pl~e~~~~i~~lL~~L~~~~~~~~~~~r~r~~G~AL~~A~~lL~~~~~~~~~~~~k~~~~ggrIivF~sG 427 (860)
.+....+..+...|+.|...... ....+.+|.||..|...|....... .+.. .+....|+++++|
T Consensus 73 ---------~~~~~~~~~~~~~i~~l~~~~~~---~~g~T~~~~aL~~a~~~l~~~~~~~-~~~~--~~~~~~iillTDG 137 (223)
T 1q0p_A 73 ---------EADSSNADWVTKQLNEINYEDHK---LKSGTNTKKALQAVYSMMSWPDDVP-PEGW--NRTRHVIILMTDG 137 (223)
T ss_dssp ---------SGGGGCHHHHHHHHHTCCTTSCS---CTTCCCHHHHHHHHHHHHCCTTSSC-CTTG--GGCEEEEEEEECS
T ss_pred ---------cCCCCCHHHHHHHHHhccccccc---CCCCccHHHHHHHHHHHhhcccccc-cccc--ccCCeEEEEECCC
Confidence 11222344556666776653110 1245899999999999997421000 0000 0112357888999
Q ss_pred CCCCCCCCccCCCCCCCchhhhHhHHHHHHHHH------HHHHhCCcEEEEEeecCCCCCcccchhhhccccc--EEEEe
Q 002987 428 PNTYGPGSVPHSFSHPNYLHMEKMALKWMELLG------RKAHQHNAVIDILCAGNCPVRVPVLQPLAKASGG--VLVLH 499 (860)
Q Consensus 428 ppt~GpG~l~~~~~~~~~~~~ek~a~~fY~~La------~~~~~~gisVDiF~~~~~~v~la~l~~L~~~TGG--~v~~y 499 (860)
.++.|.- . ....+-.+++. +.+.+.||.|..+.++. .++..+|..++..+|| .++..
T Consensus 138 ~~~~g~~-----------~---~~~~~~~~~~~~~~~~~~~~~~~~i~i~~igvG~-~~~~~~L~~iA~~~~G~~~~~~~ 202 (223)
T 1q0p_A 138 LHNMGGD-----------P---ITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGP-LVNQVNINALASKKDNEQHVFKV 202 (223)
T ss_dssp CCCSSSC-----------T---HHHHHHHHHHTTCSCBTTBCCGGGEEEEEEECSS-CCCHHHHHHHSCCCTTCCCEEET
T ss_pred CCCCCCC-----------h---HHHHHHHHHHHhhhhhhhhcccCCcEEEEEEecC-cCCHHHHHHHhcCCCCCceEEEc
Confidence 8876530 0 11111112221 23345677776666654 4678899999999999 88888
Q ss_pred CCch
Q 002987 500 DDFG 503 (860)
Q Consensus 500 ~~f~ 503 (860)
++++
T Consensus 203 ~~~~ 206 (223)
T 1q0p_A 203 KDME 206 (223)
T ss_dssp TC--
T ss_pred CCHH
Confidence 8775
No 15
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=98.38 E-value=9.7e-06 Score=80.12 Aligned_cols=159 Identities=14% Similarity=0.179 Sum_probs=99.1
Q ss_pred CCcEEEEEECCCC--hhH---HHHHHHHHHHhhhcCCCCcEEEEEEECCeEEEEecCCCCceeeecccCCCCCCHHHHHH
Q 002987 273 SAPIILVIDECLD--EPH---LQHLQSSLHAFVESIPPTARIGIILYGRTVSVYDFSEDSIASSDVLAGDKLPTEDSLKA 347 (860)
Q Consensus 273 ~p~~vFvID~S~~--~~~---l~~l~~sL~~~L~~Lp~~~~VGlITFd~~V~vy~l~~~~~~~~~V~~g~~~p~~~~l~~ 347 (860)
+.-++||||.|.+ ... ++.+++.+... +.++.+||+|+|++..+..-
T Consensus 6 ~~dvv~vlD~SgSM~~~~~~~~~~~~~~~~~~---~~~~~~v~lv~f~~~~~~~~------------------------- 57 (182)
T 1shu_X 6 AFDLYFVLDKSGSVANNWIEIYNFVQQLAERF---VSPEMRLSFIVFSSQATIIL------------------------- 57 (182)
T ss_dssp CEEEEEEEECSGGGGGGHHHHHHHHHHHHHHC---CCTTEEEEEEEESSSEEEEE-------------------------
T ss_pred ceeEEEEEECCCCcccCHHHHHHHHHHHHHHh---cCCCceEEEEEeCCCceEEE-------------------------
Confidence 3457999999975 222 23444444433 34689999999998765421
Q ss_pred HhhcCCccccchhhhHHHHHHHHhhhccCccccccCCCCCchHHHHHHHHHHhcCCCcccccccccCCCCCcEEEEEeCC
Q 002987 348 LLYGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGG 427 (860)
Q Consensus 348 l~~~~~~fL~pl~e~~~~i~~lL~~L~~~~~~~~~~~r~r~~G~AL~~A~~lL~~~~~~~~~~~~k~~~~ggrIivF~sG 427 (860)
|+...+..+...|+.|..... ...+.++.||..|..++.... +.+....|+++++|
T Consensus 58 ----------~~~~~~~~~~~~l~~l~~~~~-----~g~T~~~~al~~a~~~l~~~~---------~~~~~~~iiliTDG 113 (182)
T 1shu_X 58 ----------PLTGDRGKISKGLEDLKRVSP-----VGETYIHEGLKLANEQIQKAG---------GLKTSSIIIALTDG 113 (182)
T ss_dssp ----------EEECCHHHHHHHHHHHHTCCC-----CSCCCHHHHHHHHHHHHHHHT---------GGGSCEEEEEEECC
T ss_pred ----------CCCCCHHHHHHHHHhcccCCC-----CCCchHHHHHHHHHHHHHhcc---------CCCCCeEEEEECCC
Confidence 011122334455556653211 235889999999999986410 01134678888888
Q ss_pred CCCCCCCCccCCCCCCCchhhhHhHHHHHHHHHHHHHhCCcEEEEEeecCCCCCcccchhhhcccccEEEEeCCchh
Q 002987 428 PNTYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKASGGVLVLHDDFGE 504 (860)
Q Consensus 428 ppt~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~~~~~v~la~l~~L~~~TGG~v~~y~~f~~ 504 (860)
.++.+ ......+.++.+.+.|+.|..+..+ ..+..+|..++..+||..+.-++|.+
T Consensus 114 ~~~~~-------------------~~~~~~~~~~~~~~~~i~i~~igvg--~~~~~~L~~ia~~~~~~~~~~~~~~~ 169 (182)
T 1shu_X 114 KLDGL-------------------VPSYAEKEAKISRSLGASVYCVGVL--DFEQAQLERIADSKEQVFPVKGGFQA 169 (182)
T ss_dssp CCCTT-------------------HHHHHHHHHHHHHHTTCEEEEEECS--SCCHHHHHHHSSSGGGEEESSSTTHH
T ss_pred CcCCC-------------------CchhHHHHHHHHHhCCCEEEEEeCC--cCCHHHHHHHhCCCCceEEccCCHHH
Confidence 76421 0112345667778889887777776 46788999999999886544446653
No 16
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=98.38 E-value=1.2e-05 Score=80.50 Aligned_cols=159 Identities=15% Similarity=0.271 Sum_probs=105.7
Q ss_pred CcEEEEEECCCC--hhHHHHHHHHHHHhhhcCC---CCcEEEEEEECCeEEEE-ecCCCCceeeecccCCCCCCHHHHHH
Q 002987 274 APIILVIDECLD--EPHLQHLQSSLHAFVESIP---PTARIGIILYGRTVSVY-DFSEDSIASSDVLAGDKLPTEDSLKA 347 (860)
Q Consensus 274 p~~vFvID~S~~--~~~l~~l~~sL~~~L~~Lp---~~~~VGlITFd~~V~vy-~l~~~~~~~~~V~~g~~~p~~~~l~~ 347 (860)
.-++||||.|.+ ...++.+|+.+...++.++ .+.+||+|+|++.+++. .+..
T Consensus 6 ~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~---------------------- 63 (189)
T 1atz_A 6 LDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWNV---------------------- 63 (189)
T ss_dssp EEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTC----------------------
T ss_pred eeEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEEEecCC----------------------
Confidence 457999999985 5678999999999998885 46899999999877642 1110
Q ss_pred HhhcCCccccchhhhHHHHHHHHhhhccCccccccCCCCCchHHHHHHHHHHhcCCCcccccccccCCCCCcE-EEEEeC
Q 002987 348 LLYGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSR-IIVCAG 426 (860)
Q Consensus 348 l~~~~~~fL~pl~e~~~~i~~lL~~L~~~~~~~~~~~r~r~~G~AL~~A~~lL~~~~~~~~~~~~k~~~~ggr-IivF~s 426 (860)
...++.+...|+.|+.. ...+.+|.||..|...+..... |. +. ...| ++++++
T Consensus 64 ------------~~~~~~~~~~i~~l~~~-------~g~T~~~~aL~~a~~~l~~~~~----g~--r~-~~~~~vivltd 117 (189)
T 1atz_A 64 ------------VPEKAHLLSLVDVMQRE-------GGPSQIGDALGFAVRYLTSEMH----GA--RP-GASKAVVILVT 117 (189)
T ss_dssp ------------CCCHHHHHHHHHTCCCC-------CCCCCHHHHHHHHHHHHHSCCT----TC--CT-TSEEEEEEEEC
T ss_pred ------------CCCHHHHHHHHHhCcCC-------CCcchHHHHHHHHHHHHhcccc----CC--CC-CCCcEEEEEeC
Confidence 01223344455555431 2358999999999998854210 00 01 1235 677888
Q ss_pred CCCCCCCCCccCCCCCCCchhhhHhHHHHHHHHHHHHHhCCcEEEEEeecCCCCCcccchhhhccccc-EEEEeCCchh
Q 002987 427 GPNTYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKASGG-VLVLHDDFGE 504 (860)
Q Consensus 427 Gppt~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~~~~~v~la~l~~L~~~TGG-~v~~y~~f~~ 504 (860)
|.++.. ..+.++++.+.||.|..+..+.+ ++..+|..++..++| .++..++|.+
T Consensus 118 g~~~~~-----------------------~~~~~~~~~~~gi~v~~igvG~~-~~~~~L~~iA~~~~~~~~~~~~~~~~ 172 (189)
T 1atz_A 118 DVSVDS-----------------------VDAAADAARSNRVTVFPIGIGDR-YDAAQLRILAGPAGDSNVVKLQRIED 172 (189)
T ss_dssp SCCSSC-----------------------CHHHHHHHHHTTEEEEEEEESSS-SCHHHHHHHTGGGGGGGCEEESSTTH
T ss_pred CCCCch-----------------------HHHHHHHHHHCCCEEEEEEcCCc-CCHHHHHHHHCCCcccCEEEecChhh
Confidence 754311 02455666778988877777653 577899999999876 6777777753
No 17
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=98.36 E-value=5.3e-06 Score=83.31 Aligned_cols=163 Identities=12% Similarity=0.183 Sum_probs=105.6
Q ss_pred CcEEEEEECCCC--hhHHHHHHHHHHHhhhcC-CCCcEEEEEEECCeEEEE-ecCCCCceeeecccCCCCCCHHHHHHHh
Q 002987 274 APIILVIDECLD--EPHLQHLQSSLHAFVESI-PPTARIGIILYGRTVSVY-DFSEDSIASSDVLAGDKLPTEDSLKALL 349 (860)
Q Consensus 274 p~~vFvID~S~~--~~~l~~l~~sL~~~L~~L-p~~~~VGlITFd~~V~vy-~l~~~~~~~~~V~~g~~~p~~~~l~~l~ 349 (860)
.-++||||+|.+ ...++..++.++..++.+ +++.+||+|+|++.++.. .+ .+..
T Consensus 10 ~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~~~~~~-------------------~~~~--- 67 (198)
T 1n3y_A 10 QDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTF-------------------EEFR--- 67 (198)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEEEEECH-------------------HHHH---
T ss_pred eeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCccEEEec-------------------CccC---
Confidence 457999999975 446788899999999888 799999999999876532 11 0000
Q ss_pred hcCCccccchhhhHHHHHHHHhhhccCccccccCCCCCchHHHHHHHH-HHhcCCCcccccccccCCCCCcEEEEEeCCC
Q 002987 350 YGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVAL-AIIQGPSAEMSRGVVKRPGGNSRIIVCAGGP 428 (860)
Q Consensus 350 ~~~~~fL~pl~e~~~~i~~lL~~L~~~~~~~~~~~r~r~~G~AL~~A~-~lL~~~~~~~~~~~~k~~~~ggrIivF~sGp 428 (860)
.+..+...|+.|.. ....+.+|.||..|. .++.... +. +.+....|+++++|.
T Consensus 68 ------------~~~~~~~~i~~l~~-------~~g~T~~~~al~~a~~~l~~~~~-----~~--r~~~~~~iillTDG~ 121 (198)
T 1n3y_A 68 ------------RSSNPLSLLASVHQ-------LQGFTYTATAIQNVVHRLFHASY-----GA--RRDAAKILIVITDGK 121 (198)
T ss_dssp ------------HCSSGGGGGTTCCC-------CCSCBCHHHHHHHHHTTTTSGGG-----TC--CTTSEEEEEEEESSC
T ss_pred ------------CHHHHHHHHhcCcC-------CCCCchHHHHHHHHHHHHhCccc-----CC--CCCCceEEEEECCCC
Confidence 00001112223321 123588999999999 4444210 00 011235688889998
Q ss_pred CCCCCCCccCCCCCCCchhhhHhHHHHHHHHHHHHHhCCcEEEEEeecCCC---CCcccchhhhcccccEE-EEeCCchh
Q 002987 429 NTYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCP---VRVPVLQPLAKASGGVL-VLHDDFGE 504 (860)
Q Consensus 429 pt~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~~~~~---v~la~l~~L~~~TGG~v-~~y~~f~~ 504 (860)
++.++-. +.+.+.++.+.||.|..+.++.+. .+..+|..++..|||.. +..+++.+
T Consensus 122 ~~~~~~~--------------------~~~~~~~~~~~gi~i~~igvG~~~~~~~~~~~L~~iA~~~~g~~~~~~~~~~~ 181 (198)
T 1n3y_A 122 KEGDSLD--------------------YKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDA 181 (198)
T ss_dssp CBSCSSC--------------------HHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHHHHSCSSSGGGEEEESSGGG
T ss_pred CCCCccc--------------------HHHHHHHHHHCCCEEEEEEccccccccccHHHHHHHHcCCCcccEEEeCCHHH
Confidence 8743210 134556678899998888887654 36789999999999974 77777764
No 18
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=98.33 E-value=8e-06 Score=94.55 Aligned_cols=188 Identities=13% Similarity=0.103 Sum_probs=114.7
Q ss_pred CcEEEEEECCCC--hhHHHHHHHHHHHhhhcC---CCCcEEEEEEECCeEEEEe-cCCCCceeeecccCCCCCCHHHHHH
Q 002987 274 APIILVIDECLD--EPHLQHLQSSLHAFVESI---PPTARIGIILYGRTVSVYD-FSEDSIASSDVLAGDKLPTEDSLKA 347 (860)
Q Consensus 274 p~~vFvID~S~~--~~~l~~l~~sL~~~L~~L---p~~~~VGlITFd~~V~vy~-l~~~~~~~~~V~~g~~~p~~~~l~~ 347 (860)
.-++||||.|.+ ...++.+|+.+...++.| +++.+||||+|++..++.- +.
T Consensus 10 ~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~~~l~----------------------- 66 (509)
T 2odp_A 10 LNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLMSVL----------------------- 66 (509)
T ss_dssp EEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEEECTT-----------------------
T ss_pred eeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCceeEecc-----------------------
Confidence 457999999975 557899999999998877 7899999999998776421 10
Q ss_pred HhhcCCccccchhhhHHHHHHHHhhhccCccccccCCCCCchHHHHHHHHHHhcCCCccccc--ccccCCCCCcEEEEEe
Q 002987 348 LLYGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSR--GVVKRPGGNSRIIVCA 425 (860)
Q Consensus 348 l~~~~~~fL~pl~e~~~~i~~lL~~L~~~~~~~~~~~r~r~~G~AL~~A~~lL~~~~~~~~~--~~~k~~~~ggrIivF~ 425 (860)
.+....++.+...|+.|...... ....+.++.||..|..+|......... +..+ +....|++++
T Consensus 67 ---------~~~~~~~~~~~~~l~~l~~~~~~---~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~--~~~~~iillT 132 (509)
T 2odp_A 67 ---------NDNSRDMTEVISSLENANYKDHE---NGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQ--EIRHAIILLT 132 (509)
T ss_dssp ---------SGGGGCHHHHHHHHHTCCGGGGT---TCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHH--TEEEEEEEES
T ss_pred ---------CCCCCCHHHHHHHHHhcccccCC---CCCCccHHHHHHHHHHHHhhccccccccccccc--ccceEEEEEC
Confidence 01112344455666666553111 124589999999999998431000000 0000 0113578889
Q ss_pred CCCCCCCCCCccCCCCCCCchhhhHhHHHHHHHHHH--HHHhCCcEEEEEeecCCCCCcccchhhhcccccE--EEEeCC
Q 002987 426 GGPNTYGPGSVPHSFSHPNYLHMEKMALKWMELLGR--KAHQHNAVIDILCAGNCPVRVPVLQPLAKASGGV--LVLHDD 501 (860)
Q Consensus 426 sGppt~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~--~~~~~gisVDiF~~~~~~v~la~l~~L~~~TGG~--v~~y~~ 501 (860)
+|.++.|. . . ..+.+-.+++.. +..+.|+.|..+.++.+.++..+|..++..+||. +++.++
T Consensus 133 DG~~~~~~-~---------~----~~~~~~~~~~~~~~~~~~~~i~i~~iGvG~~~~~~~~L~~iA~~~~G~~~~~~~~~ 198 (509)
T 2odp_A 133 DGKSNMGG-S---------P----KTAVDHIREILNINQKRNDYLDIYAIGVGKLDVDWRELNELGSKKDGERHAFILQD 198 (509)
T ss_dssp CSCCCSSS-C---------T----HHHHHHHHHHTTCCSTTGGGEEEEEEEESSSCCCHHHHHHHSCCCTTCCCEEEESS
T ss_pred CCCccCCC-C---------h----hHHHHHHHHHhhccccccCceEEEEEEcCCCcccHHHHHhhccCCCCceeeEEecC
Confidence 99887652 1 0 111111111100 1126677777777766558899999999999998 778888
Q ss_pred chhHHHHHHHHH
Q 002987 502 FGEAFGVNLQRA 513 (860)
Q Consensus 502 f~~~f~~dL~r~ 513 (860)
+++ +.+-+.++
T Consensus 199 ~~~-l~~~~~~i 209 (509)
T 2odp_A 199 TKA-LHQVFEHM 209 (509)
T ss_dssp HHH-HHHHHHHH
T ss_pred HHH-HHHHHHhh
Confidence 753 33334444
No 19
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.32 E-value=1.2e-05 Score=85.80 Aligned_cols=165 Identities=15% Similarity=0.136 Sum_probs=107.3
Q ss_pred CcEEEEEECCCC--h-hHHHHHHHHHHHhhhcCCC---CcEEEEEEECCeEEEE-ecCCCCceeeecccCCCCCCHHHHH
Q 002987 274 APIILVIDECLD--E-PHLQHLQSSLHAFVESIPP---TARIGIILYGRTVSVY-DFSEDSIASSDVLAGDKLPTEDSLK 346 (860)
Q Consensus 274 p~~vFvID~S~~--~-~~l~~l~~sL~~~L~~Lp~---~~~VGlITFd~~V~vy-~l~~~~~~~~~V~~g~~~p~~~~l~ 346 (860)
.-++||||.|.+ . ..++.+++.++..++.|.. +.+||||+|++.++.. .+... ..
T Consensus 22 ~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~-----------~~------- 83 (281)
T 4hqf_A 22 VDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLHSD-----------AS------- 83 (281)
T ss_dssp EEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEEECSS-----------CS-------
T ss_pred eeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEEcccc-----------Cc-------
Confidence 347999999975 2 3448899999999998874 8999999998877432 22210 00
Q ss_pred HHhhcCCccccchhhhHHHHHHHHhhhccCccccccCCCCCchHHHHHHHHHHhcCCCcccccccccCCCCCcEEEEEeC
Q 002987 347 ALLYGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAG 426 (860)
Q Consensus 347 ~l~~~~~~fL~pl~e~~~~i~~lL~~L~~~~~~~~~~~r~r~~G~AL~~A~~lL~~~~~~~~~~~~k~~~~ggrIivF~s 426 (860)
..+..+...|+.|+..... ...+.+|.||..|...+..... +.+....|+++++
T Consensus 84 --------------~~~~~l~~~i~~l~~~~~~----~G~T~~~~aL~~a~~~l~~~~~--------r~~~~~~iillTD 137 (281)
T 4hqf_A 84 --------------KNKEKALIIIKSLLSTNLP----YGKTSLTDALLQVRKHLNDRIN--------RENANQLVVILTD 137 (281)
T ss_dssp --------------SCHHHHHHHHHHHHHTTGG----GCSCCHHHHHHHHHHHHHTSCC--------CTTCEEEEEEEES
T ss_pred --------------cCHHHHHHHHHHHhhccCC----CCCccHHHHHHHHHHHHHhccC--------CCCCCEEEEEEec
Confidence 0122334445555531111 2358899999999888764210 0112345888888
Q ss_pred CCCCCCCCCccCCCCCCCchhhhHhHHHHHHHHHHHHHhCCcEEEEEeecCCCCCcccchhhhcc--ccc--EEEEeCCc
Q 002987 427 GPNTYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKA--SGG--VLVLHDDF 502 (860)
Q Consensus 427 Gppt~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~~~~~v~la~l~~L~~~--TGG--~v~~y~~f 502 (860)
|.++.+ .-..+.++++.+.||.|-.+.++.+ ++-..|..++.. +|| .++...+|
T Consensus 138 G~~~d~---------------------~~~~~~~~~l~~~gv~i~~igiG~~-~~~~~L~~iA~~~~~~g~~~~~~~~~~ 195 (281)
T 4hqf_A 138 GIPDSI---------------------QDSLKESRKLSDRGVKIAVFGIGQG-INVAFNRFLVGCHPSDGKCNLYADSAW 195 (281)
T ss_dssp SCCSCH---------------------HHHHHHHHHHHHTTCEEEEEEESSS-CCHHHHHHHTTSCSSSSCCTTEEEECG
T ss_pred CCCCCc---------------------HHHHHHHHHHHHCCCEEEEEeCCCc-cCHHHHHhhhCCCCCCCCCceEEecch
Confidence 876510 0123456667788988777777654 577788899876 676 78888898
Q ss_pred hh
Q 002987 503 GE 504 (860)
Q Consensus 503 ~~ 504 (860)
++
T Consensus 196 ~~ 197 (281)
T 4hqf_A 196 EN 197 (281)
T ss_dssp GG
T ss_pred hh
Confidence 74
No 20
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=98.32 E-value=3.7e-06 Score=84.44 Aligned_cols=173 Identities=11% Similarity=0.182 Sum_probs=107.2
Q ss_pred CcEEEEEECCCC--hhHHHHHHHHHHHhhhcC-CCCcEEEEEEECCeEEEE-ecCCCCceeeecccCCCCCCHHHHHHHh
Q 002987 274 APIILVIDECLD--EPHLQHLQSSLHAFVESI-PPTARIGIILYGRTVSVY-DFSEDSIASSDVLAGDKLPTEDSLKALL 349 (860)
Q Consensus 274 p~~vFvID~S~~--~~~l~~l~~sL~~~L~~L-p~~~~VGlITFd~~V~vy-~l~~~~~~~~~V~~g~~~p~~~~l~~l~ 349 (860)
.-++||||.|.+ ...++.+++.++..++.| +++.+||+|+|++.++.. .+ ...
T Consensus 6 ~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~~~~~l-------------------~~~---- 62 (194)
T 1mf7_A 6 SDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTF-------------------KEF---- 62 (194)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEEEEECH-------------------HHH----
T ss_pred eeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCceEEEec-------------------CCc----
Confidence 457999999975 457888899998888877 468999999999877532 11 000
Q ss_pred hcCCccccchhhhHHHHHHHHhhhccCccccccCCCCCchHHHHHHHHHHh-cCCCcccccccccCCCCCcEEEEEeCCC
Q 002987 350 YGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAII-QGPSAEMSRGVVKRPGGNSRIIVCAGGP 428 (860)
Q Consensus 350 ~~~~~fL~pl~e~~~~i~~lL~~L~~~~~~~~~~~r~r~~G~AL~~A~~lL-~~~~~~~~~~~~k~~~~ggrIivF~sGp 428 (860)
..+..+...|+.|+. ....+.+|.||..|...+ .... + .+.+....|+++++|.
T Consensus 63 -----------~~~~~~~~~i~~l~~-------~~g~T~~~~aL~~a~~~l~~~~~-----~--~r~~~~~~iillTDG~ 117 (194)
T 1mf7_A 63 -----------QNNPNPRSLVKPITQ-------LLGRTHTATGIRKVVRELFNITN-----G--ARKNAFKILVVITDGE 117 (194)
T ss_dssp -----------HHSCCHHHHHTTCCC-------CCSCBCHHHHHHHHHHTTTSGGG-----T--CCTTSEEEEEEEESSC
T ss_pred -----------CCHHHHHHHHHhCcC-------CCCCchHHHHHHHHHHHhcCccc-----C--CCCCCCeEEEEEcCCC
Confidence 011122334445442 123588999999999644 3100 0 0001123588889998
Q ss_pred CCCCCCCccCCCCCCCchhhhHhHHHHHHHHHHHHHhCCcEEEEEeecCCC---CCcccchhhhccc-ccEEEEeCCchh
Q 002987 429 NTYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCP---VRVPVLQPLAKAS-GGVLVLHDDFGE 504 (860)
Q Consensus 429 pt~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~~~~~---v~la~l~~L~~~T-GG~v~~y~~f~~ 504 (860)
++..+- . +++.++++.+.||.|..+..+.+. .+..+|..++..+ +|.+|..+++++
T Consensus 118 ~~~d~~---------~-----------~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~L~~iA~~~~~~~~~~~~~~~~ 177 (194)
T 1mf7_A 118 KFGDPL---------G-----------YEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEA 177 (194)
T ss_dssp CBSCSS---------C-----------GGGTHHHHHHTTEEEEEEEESGGGCSHHHHHHHHHHSCSSHHHHEEEESSGGG
T ss_pred CCCCch---------h-----------hHHHHHHHHHCCCEEEEEEecccccccccHHHHHHHhCCCCcccEEEeCCHHH
Confidence 871110 0 012345567789888777776543 1367899999986 589998888864
Q ss_pred --HHHHHHHHHH
Q 002987 505 --AFGVNLQRAS 514 (860)
Q Consensus 505 --~f~~dL~r~l 514 (860)
.+...|.+.+
T Consensus 178 l~~~~~~i~~~i 189 (194)
T 1mf7_A 178 LKTIQNQLREKI 189 (194)
T ss_dssp GGGGHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 3334444433
No 21
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=98.28 E-value=5.3e-06 Score=85.39 Aligned_cols=164 Identities=12% Similarity=0.128 Sum_probs=106.0
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHhhhcCC---CCcEEEEEEECCeEEEE-ecCCCCceeeecccCCCCCCHHHHHHHh
Q 002987 274 APIILVIDECLDEPHLQHLQSSLHAFVESIP---PTARIGIILYGRTVSVY-DFSEDSIASSDVLAGDKLPTEDSLKALL 349 (860)
Q Consensus 274 p~~vFvID~S~~~~~l~~l~~sL~~~L~~Lp---~~~~VGlITFd~~V~vy-~l~~~~~~~~~V~~g~~~p~~~~l~~l~ 349 (860)
.-++||||.|.+-..++.+++.+...++.|. ++.+||+|+|++.+++. .+. + +
T Consensus 23 ~div~vlD~SgSM~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~~l~-----------~---~--------- 79 (223)
T 2b2x_A 23 LDIVIVLDGSNSIYPWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLN-----------K---Y--------- 79 (223)
T ss_dssp EEEEEEEECSTTCCCHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEECTT-----------T---C---------
T ss_pred ceEEEEEECCCChhhHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEEecC-----------C---C---------
Confidence 3579999999875568899999999988874 78999999999877542 110 0 0
Q ss_pred hcCCccccchhhhHHHHHHHHhhhccCccccccCCCCCchHHHHHHHHHHhcCCCcccccccccCCCCCcEEEEEeCCCC
Q 002987 350 YGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGGPN 429 (860)
Q Consensus 350 ~~~~~fL~pl~e~~~~i~~lL~~L~~~~~~~~~~~r~r~~G~AL~~A~~lL~~~~~~~~~~~~k~~~~ggrIivF~sGpp 429 (860)
.....+.+.|+.|... +...+.+|.||..|...+-.... + .+.+....|+++++|.+
T Consensus 80 -----------~~~~~~~~~i~~l~~~------gG~~T~~~~aL~~a~~~l~~~~~----~--~~~~~~~~iillTDG~~ 136 (223)
T 2b2x_A 80 -----------SSTEEVLVAANKIVQR------GGRQTMTALGIDTARKEAFTEAR----G--ARRGVKKVMVIVTDGES 136 (223)
T ss_dssp -----------CSHHHHHHHHTTCCCC------CCSSCCHHHHHHHHHHTTSSGGG----T--CCTTSEEEEEEEESSCC
T ss_pred -----------CCHHHHHHHHHhhhcc------CCCCccHHHHHHHHHHHhcCccc----C--CCCCCCeEEEEEcCCCC
Confidence 0111222334444321 11248899999999987421000 0 00112345788888987
Q ss_pred CCCCCCccCCCCCCCchhhhHhHHHHHHHHHHHHHhCCcEEEEEeecCCCC----C----cccchhhhcc-cccEEEEeC
Q 002987 430 TYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPV----R----VPVLQPLAKA-SGGVLVLHD 500 (860)
Q Consensus 430 t~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~~~~~v----~----la~l~~L~~~-TGG~v~~y~ 500 (860)
+.|. -..+.++++.+.||.|..+.++.+.- + ..+|+.++.. |||.+|..+
T Consensus 137 ~~~~---------------------~~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~~~~~~L~~iA~~p~~g~~~~~~ 195 (223)
T 2b2x_A 137 HDNY---------------------RLKQVIQDCEDENIQRFSIAILGHYNRGNLSTEKFVEEIKSIASEPTEKHFFNVS 195 (223)
T ss_dssp TTGG---------------------GHHHHHHHHHTTTEEEEEEEECGGGC---CCCHHHHHHHHTTSCSSGGGTEEEES
T ss_pred CCCc---------------------cHHHHHHHHHHCCCEEEEEEecCccccccccchhHHHHHHHHhCCCchhcEEEeC
Confidence 6431 02345667778898888877764321 0 3789999998 999999998
Q ss_pred Cchh
Q 002987 501 DFGE 504 (860)
Q Consensus 501 ~f~~ 504 (860)
++++
T Consensus 196 ~~~~ 199 (223)
T 2b2x_A 196 DELA 199 (223)
T ss_dssp STTG
T ss_pred CHHH
Confidence 8764
No 22
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.27 E-value=1.7e-05 Score=78.51 Aligned_cols=161 Identities=13% Similarity=0.153 Sum_probs=100.1
Q ss_pred cEEEEEECCCCh-hHHHHHHHHHHHhhhc-CCCCcEEEEEEECCeEEEEecCCCCceeeecccCCCCCCHHHHHHHhhcC
Q 002987 275 PIILVIDECLDE-PHLQHLQSSLHAFVES-IPPTARIGIILYGRTVSVYDFSEDSIASSDVLAGDKLPTEDSLKALLYGT 352 (860)
Q Consensus 275 ~~vFvID~S~~~-~~l~~l~~sL~~~L~~-Lp~~~~VGlITFd~~V~vy~l~~~~~~~~~V~~g~~~p~~~~l~~l~~~~ 352 (860)
-++||||.|.+- +..+.+++.+++.++. +.++.+||+|+|++.+++.-
T Consensus 9 div~vlD~SgSM~~~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~------------------------------ 58 (185)
T 3n2n_F 9 DLYFILDKSGSVLHHWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLM------------------------------ 58 (185)
T ss_dssp EEEEEEECSGGGGGGHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEE------------------------------
T ss_pred eEEEEEeCCCChhhhHHHHHHHHHHHHHHhCCCCcEEEEEEEecCceEEe------------------------------
Confidence 469999999862 2355555566555554 35689999999998776421
Q ss_pred CccccchhhhHHHHHHHHhhhccCccccccCCCCCchHHHHHHHHHHhcCCCcccccccccCCCCCcEEEEEeCCCCCCC
Q 002987 353 GVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGGPNTYG 432 (860)
Q Consensus 353 ~~fL~pl~e~~~~i~~lL~~L~~~~~~~~~~~r~r~~G~AL~~A~~lL~~~~~~~~~~~~k~~~~ggrIivF~sGppt~G 432 (860)
|+.+.++.+...|+.|+... ....+.+|.||..|...+..... ........|+++++|.++.+
T Consensus 59 -----~l~~~~~~~~~~i~~l~~~~-----~~g~T~~~~al~~a~~~l~~~~~-------~~~~~~~~iillTDG~~~~~ 121 (185)
T 3n2n_F 59 -----KLTEDREQIRQGLEELQKVL-----PGGDTYMHEGFERASEQIYYENR-------QGYRTASVIIALTDGELHED 121 (185)
T ss_dssp -----EEECCHHHHHHHHHHHHTCC-----CCSCCCHHHHHHHHHHHHHHHHT-------TCBCEEEEEEEEECCCCCHH
T ss_pred -----ccCCCHHHHHHHHHHHhhhc-----CCCCccHHHHHHHHHHHHhhccc-------cCCCCCcEEEEEcCCCCCCC
Confidence 11123344555666666531 12358899999999997721000 00001246778888865321
Q ss_pred CCCccCCCCCCCchhhhHhHHHHHHHHHHHHHhCCcEEEEEeecCCCCCcccchhhhcccccEEEEeCC-chh
Q 002987 433 PGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKASGGVLVLHDD-FGE 504 (860)
Q Consensus 433 pG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~~~~~v~la~l~~L~~~TGG~v~~y~~-f~~ 504 (860)
+ ..-.++.++++.+.|+.|..+.++ ..+-.+|..++.. +|.+|...+ |++
T Consensus 122 ~-------------------~~~~~~~~~~~~~~gi~i~~igvg--~~~~~~L~~iA~~-~~~~~~~~~~~~~ 172 (185)
T 3n2n_F 122 L-------------------FFYSEREANRSRDLGAIVYAVGVK--DFNETQLARIADS-KDHVFPVNDGFQA 172 (185)
T ss_dssp H-------------------HHHHHHHHHHHHHTTEEEEEEECS--SCCHHHHTTTSSS-GGGEEEHHHHHHH
T ss_pred c-------------------ccchHHHHHHHHHCCCEEEEEEec--cCCHHHHHHHhCC-CCCeEEeccHHHH
Confidence 1 111134677788889877777666 5688899999965 577777766 753
No 23
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=98.27 E-value=1.2e-05 Score=85.40 Aligned_cols=165 Identities=14% Similarity=0.166 Sum_probs=107.1
Q ss_pred CcEEEEEECCCC--hhHH-HHHHHHHHHhhhcCC---CCcEEEEEEECCeEEEE-ecCCCCceeeecccCCCCCCHHHHH
Q 002987 274 APIILVIDECLD--EPHL-QHLQSSLHAFVESIP---PTARIGIILYGRTVSVY-DFSEDSIASSDVLAGDKLPTEDSLK 346 (860)
Q Consensus 274 p~~vFvID~S~~--~~~l-~~l~~sL~~~L~~Lp---~~~~VGlITFd~~V~vy-~l~~~~~~~~~V~~g~~~p~~~~l~ 346 (860)
.-++||||.|.+ ...+ +.+++.++..++.|. ++.+||||+|++.+... .+.. .
T Consensus 19 ~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~~~l~~-----------------~--- 78 (266)
T 4hqo_A 19 VDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELIRLGS-----------------G--- 78 (266)
T ss_dssp EEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEEECTTS-----------------H---
T ss_pred eeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceEEecCC-----------------C---
Confidence 347999999976 3455 578999999998886 78999999999876542 1110 0
Q ss_pred HHhhcCCccccchhhhHHHHHHHHhhhccCccccccCCCCCchHHHHHHHHHHhcCCCcccccccccCCCCCcEEEEEeC
Q 002987 347 ALLYGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAG 426 (860)
Q Consensus 347 ~l~~~~~~fL~pl~e~~~~i~~lL~~L~~~~~~~~~~~r~r~~G~AL~~A~~lL~~~~~~~~~~~~k~~~~ggrIivF~s 426 (860)
....+..+...|+.|+.... ....+.+|.||..|..++..... +.+....|+++++
T Consensus 79 ------------~~~~~~~~~~~i~~l~~~~~----~~G~T~~~~AL~~a~~~l~~~~~--------r~~~~~~iIllTD 134 (266)
T 4hqo_A 79 ------------QSIDKRQALSKVTELRKTYT----PYGTTSMTAALDEVQKHLNDRVN--------REKAIQLVILMTD 134 (266)
T ss_dssp ------------HHHCHHHHHHHHHHHHHHCC----CCSCCCHHHHHHHHHHHHHTTCS--------CTTSEEEEEEEEC
T ss_pred ------------CccCHHHHHHHHHHhhhccC----CCCCCCHHHHHHHHHHHHhhccc--------cCCCCeEEEEEcc
Confidence 01123445556666652101 12358899999999999875200 0112246788888
Q ss_pred CCCCCCCCCccCCCCCCCchhhhHhHHHHHHHHHHHHHhCCcEEEEEeecCCCCCcccchhhhccc--cc--EEEEeCCc
Q 002987 427 GPNTYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKAS--GG--VLVLHDDF 502 (860)
Q Consensus 427 Gppt~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~~~~~v~la~l~~L~~~T--GG--~v~~y~~f 502 (860)
|.++. . .-..+.++++.+.||.|-.+.++. .++-..|..++... || .+|++.+|
T Consensus 135 G~~~d--------------~-------~~~~~~a~~l~~~gi~i~~iGiG~-~~~~~~L~~iA~~~~~~g~~~~~~~~d~ 192 (266)
T 4hqo_A 135 GVPNS--------------K-------YRALEVANKLKQRNVRLAVIGIGQ-GINHQFNRLIAGCRPREPNCKFYSYADW 192 (266)
T ss_dssp SCCSC--------------H-------HHHHHHHHHHHHTTCEEEEEECSS-SCCHHHHHHHHTCCTTCSSCTTEECSCH
T ss_pred CCCCC--------------c-------hHHHHHHHHHHHCCCEEEEEecCc-ccCHHHHHHhhCCCCCCCCCCeEEecCH
Confidence 87641 0 012356677788898777777765 45666678888774 43 78888888
Q ss_pred hh
Q 002987 503 GE 504 (860)
Q Consensus 503 ~~ 504 (860)
++
T Consensus 193 ~~ 194 (266)
T 4hqo_A 193 NE 194 (266)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 24
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=98.26 E-value=1.4e-05 Score=92.10 Aligned_cols=177 Identities=12% Similarity=0.149 Sum_probs=109.2
Q ss_pred cEEEEEECCCC--hhHHHHHHHHHHHhhhcC---CCCcEEEEEEECCeEEEEe-cCCCCceeeecccCCCCCCHHHHHHH
Q 002987 275 PIILVIDECLD--EPHLQHLQSSLHAFVESI---PPTARIGIILYGRTVSVYD-FSEDSIASSDVLAGDKLPTEDSLKAL 348 (860)
Q Consensus 275 ~~vFvID~S~~--~~~l~~l~~sL~~~L~~L---p~~~~VGlITFd~~V~vy~-l~~~~~~~~~V~~g~~~p~~~~l~~l 348 (860)
-++||||.|.+ ...++.+|+.+...++.+ +.+.+||||+|++..++.- +.
T Consensus 3 div~vlD~SgSM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~------------------------ 58 (497)
T 1rrk_A 3 NIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVS------------------------ 58 (497)
T ss_dssp EEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTT------------------------
T ss_pred eEEEEEECCCCcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEeeccc------------------------
Confidence 36999999986 467888898888887754 5689999999998765421 10
Q ss_pred hhcCCccccchhhhHHHHHHHHhhhccCccccccCCCCCchHHHHHHHHHHhcCCCcccccccccCCCCCcEEEEEeCCC
Q 002987 349 LYGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGGP 428 (860)
Q Consensus 349 ~~~~~~fL~pl~e~~~~i~~lL~~L~~~~~~~~~~~r~r~~G~AL~~A~~lL~~~~~~~~~~~~k~~~~ggrIivF~sGp 428 (860)
.+....++.+.+.|+.|...... ....+.+|.||..|..++...... .++.. .+....|+++++|.
T Consensus 59 --------~~~~~~~~~~~~~l~~l~~~~~~---~~g~T~~~~al~~a~~~l~~~~~~-~~~~~--~~~~~~iillTDG~ 124 (497)
T 1rrk_A 59 --------EADSSNADWVTKQLNEINYEDHK---LKSGTNTKKALQAVYSMMSWPDDV-PPEGW--NRTRHVIILMTDGL 124 (497)
T ss_dssp --------SGGGGCHHHHHHHHHHCCGGGSC---CTTCCCHHHHHHHHHHHHCCC-------CG--GGCEEEEEEEECSC
T ss_pred --------cccccCHHHHHHHHHhCcCcccc---ccCccCHHHHHHHHHHHhhhhhcc-ccccc--cccceEEEEEeCCC
Confidence 11223345566667777652111 123589999999999999531100 00000 01234688889999
Q ss_pred CCCCCCCccCCCCCCCchhhhHhHHHHHHHH------HHHHHhCCcEEEEEeecCCCCCcccchhhhccccc--EEEEeC
Q 002987 429 NTYGPGSVPHSFSHPNYLHMEKMALKWMELL------GRKAHQHNAVIDILCAGNCPVRVPVLQPLAKASGG--VLVLHD 500 (860)
Q Consensus 429 pt~GpG~l~~~~~~~~~~~~ek~a~~fY~~L------a~~~~~~gisVDiF~~~~~~v~la~l~~L~~~TGG--~v~~y~ 500 (860)
++.|... ..+.+-.++. +..+.+.||.|..+.++. .++..+|+.++..+|| .++..+
T Consensus 125 ~~~g~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~v~~igvG~-~~~~~~L~~iA~~~~g~~~~~~~~ 189 (497)
T 1rrk_A 125 HNMGGDP--------------ITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGP-LVNQVNINALASKKDNEQHVCKVK 189 (497)
T ss_dssp CCSSSCT--------------HHHHHHHHHHTTCSSCC-CCCGGGEEEEEEECSS-SCCHHHHHHHSCCCTTCCCEEETT
T ss_pred cccCCCh--------------hHHHHHHHHHhhhhcccccchhcCeeEEEecCCC-ccCHHHHHHHhcCCCCcceEEEeC
Confidence 8876411 0111000111 111233477766666653 3678899999999999 888888
Q ss_pred Cchh
Q 002987 501 DFGE 504 (860)
Q Consensus 501 ~f~~ 504 (860)
++++
T Consensus 190 ~~~~ 193 (497)
T 1rrk_A 190 DMEC 193 (497)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8753
No 25
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=98.25 E-value=4.7e-06 Score=85.12 Aligned_cols=173 Identities=12% Similarity=0.132 Sum_probs=110.2
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHhhhcCC---CCcEEEEEEECCeEEEE-ecCCCCceeeecccCCCCCCHHHHHHHh
Q 002987 274 APIILVIDECLDEPHLQHLQSSLHAFVESIP---PTARIGIILYGRTVSVY-DFSEDSIASSDVLAGDKLPTEDSLKALL 349 (860)
Q Consensus 274 p~~vFvID~S~~~~~l~~l~~sL~~~L~~Lp---~~~~VGlITFd~~V~vy-~l~~~~~~~~~V~~g~~~p~~~~l~~l~ 349 (860)
.-++||||.|.+-..++.+++.+...++.|. ++.+||+|+|++.++.. .+. + +
T Consensus 8 ~div~vlD~SgSm~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~~~l~-----------~---~--------- 64 (213)
T 1pt6_A 8 LDIVIVLDGSNSIYPWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLN-----------K---Y--------- 64 (213)
T ss_dssp EEEEEEEECCTTCCCHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEECTT-----------T---C---------
T ss_pred ccEEEEEECCCChhhHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEEEecc-----------c---c---------
Confidence 4579999999875568889999998888774 79999999999877542 110 0 0
Q ss_pred hcCCccccchhhhHHHHHHHHhhhccCccccccCCCCCchHHHHHHHHHHh-cCCCcccccccccCCCCCcEEEEEeCCC
Q 002987 350 YGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAII-QGPSAEMSRGVVKRPGGNSRIIVCAGGP 428 (860)
Q Consensus 350 ~~~~~fL~pl~e~~~~i~~lL~~L~~~~~~~~~~~r~r~~G~AL~~A~~lL-~~~~~~~~~~~~k~~~~ggrIivF~sGp 428 (860)
..+..+.+.|+.+... +...+.+|.||..|...+ .... + .+.+....|+++++|.
T Consensus 65 -----------~~~~~~~~~i~~l~~~------~G~~T~~~~aL~~a~~~l~~~~~-----~--~r~~~~~~iillTDG~ 120 (213)
T 1pt6_A 65 -----------SSTEEVLVAAKKIVQR------GGRQTMTALGTDTARKEAFTEAR-----G--ARRGVKKVMVIVTDGE 120 (213)
T ss_dssp -----------SSHHHHHHHHHTCCCC------CCSSCCHHHHHHHHHHTTTSGGG-----T--CCTTCEEEEEEEESSC
T ss_pred -----------CCHHHHHHHHHhccCC------CCCcccHHHHHHHHHHHhcCccc-----C--CCCCCCeEEEEEcCCC
Confidence 0112223334444321 122478999999999864 3100 0 0011234588889898
Q ss_pred CCCCCCCccCCCCCCCchhhhHhHHHHHHHHHHHHHhCCcEEEEEeecCCC----CC----cccchhhhcc-cccEEEEe
Q 002987 429 NTYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCP----VR----VPVLQPLAKA-SGGVLVLH 499 (860)
Q Consensus 429 pt~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~~~~~----v~----la~l~~L~~~-TGG~v~~y 499 (860)
++.|. -+.+.++++.+.||.|..+.++.+. ++ ..+|+.++.. |||.+|..
T Consensus 121 ~~~~~---------------------~~~~~~~~~~~~gi~i~~igig~~~~~~~~~~~~~~~~L~~iA~~~~~g~~~~~ 179 (213)
T 1pt6_A 121 SHDNH---------------------RLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNV 179 (213)
T ss_dssp CSCSH---------------------HHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEE
T ss_pred CCCCc---------------------cHHHHHHHHHHCCCEEEEEEeccccccccccchhhHHHHHHHhCCCchhcEEEe
Confidence 76431 1244666777889888777776431 11 3688999998 89999999
Q ss_pred CCchh--HHHHHHHHHH
Q 002987 500 DDFGE--AFGVNLQRAS 514 (860)
Q Consensus 500 ~~f~~--~f~~dL~r~l 514 (860)
+++++ .+...|.+.+
T Consensus 180 ~~~~~l~~i~~~l~~~i 196 (213)
T 1pt6_A 180 SDELALVTIVKTLGERI 196 (213)
T ss_dssp SSGGGGGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 98874 3444554444
No 26
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=98.20 E-value=1e-05 Score=81.88 Aligned_cols=155 Identities=18% Similarity=0.230 Sum_probs=99.2
Q ss_pred cEEEEEECCCCh-------hHHHHHHHHHHHhhhc---CCCCcEEEEEEECCe-EEEEecCCCCceeeecccCCCCCCHH
Q 002987 275 PIILVIDECLDE-------PHLQHLQSSLHAFVES---IPPTARIGIILYGRT-VSVYDFSEDSIASSDVLAGDKLPTED 343 (860)
Q Consensus 275 ~~vFvID~S~~~-------~~l~~l~~sL~~~L~~---Lp~~~~VGlITFd~~-V~vy~l~~~~~~~~~V~~g~~~p~~~ 343 (860)
.++|+||+|.+- ..++..++.+...+.. ..+..+||||+|++. .++
T Consensus 4 ~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~----------------------- 60 (192)
T 2x5n_A 4 ATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQV----------------------- 60 (192)
T ss_dssp EEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCE-----------------------
T ss_pred EEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEE-----------------------
Confidence 479999999742 3677777777655432 235689999999742 211
Q ss_pred HHHHHhhcCCccccchhhhHHHHHHHHhhhccCccccccCCCCCchHHHHHHHHHHhcCCCcccccccccCCCCCcEEEE
Q 002987 344 SLKALLYGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIV 423 (860)
Q Consensus 344 ~l~~l~~~~~~fL~pl~e~~~~i~~lL~~L~~~~~~~~~~~r~r~~G~AL~~A~~lL~~~~~~~~~~~~k~~~~ggrIiv 423 (860)
+.|+......+...|+.+.. ...+.+|.||..|..+|+.... .+...||++
T Consensus 61 ------------~~plT~d~~~i~~~L~~l~~--------~g~t~l~~aL~~A~~~l~~~~~---------~~~~~riii 111 (192)
T 2x5n_A 61 ------------LSTLTRDYGKFLSAMHDLPV--------RGNAKFGDGIQIAQLALKHREN---------KIQRQRIVA 111 (192)
T ss_dssp ------------EEEEESCHHHHHHHHTTCCC--------CSCCCHHHHHHHHHHHHHTCSC---------TTSEEEEEE
T ss_pred ------------ecCCCCCHHHHHHHHHcCCC--------CCCchHHHHHHHHHHHHHhccc---------cCCCceEEE
Confidence 22334445555666666543 1248899999999999986310 113568888
Q ss_pred EeCCCCCCCCCCccCCCCCCCchhhhHhHHHHHHHHHHHHHhCCcEEEEEeecCCCCCcccchhhhccc----ccEEEEe
Q 002987 424 CAGGPNTYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKAS----GGVLVLH 499 (860)
Q Consensus 424 F~sGppt~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~~~~~v~la~l~~L~~~T----GG~v~~y 499 (860)
|+++.-+.. .+-..++++++.+.||.|+++.++.+.-+-. |+.+++.+ ++.++..
T Consensus 112 l~~~~~~~~--------------------~~~~~~~a~~lk~~gi~v~~Ig~G~~~~~~~-l~~la~~~n~~~~s~~~~~ 170 (192)
T 2x5n_A 112 FVGSPIVED--------------------EKNLIRLAKRMKKNNVAIDIIHIGELQNESA-LQHFIDAANSSDSCHLVSI 170 (192)
T ss_dssp EECSCCSSC--------------------HHHHHHHHHHHHHTTEEEEEEEESCC---CH-HHHHHHHHCSTTCCEEEEE
T ss_pred EEECCCCCC--------------------chhHHHHHHHHHHCCCEEEEEEeCCCCccHH-HHHHHHhccCCCceEEEEe
Confidence 886532110 0113568889999999999999987765556 88888874 2355555
Q ss_pred CCc
Q 002987 500 DDF 502 (860)
Q Consensus 500 ~~f 502 (860)
+..
T Consensus 171 ~~~ 173 (192)
T 2x5n_A 171 PPS 173 (192)
T ss_dssp CCC
T ss_pred cCc
Confidence 554
No 27
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=98.19 E-value=1.7e-05 Score=78.77 Aligned_cols=156 Identities=10% Similarity=0.205 Sum_probs=99.0
Q ss_pred cEEEEEECCCC--hhHHHHHHHHHHHhhhcC-CCCcEEEEEEECCeEEEEecCCCCceeeecccCCCCCCHHHHHHHhhc
Q 002987 275 PIILVIDECLD--EPHLQHLQSSLHAFVESI-PPTARIGIILYGRTVSVYDFSEDSIASSDVLAGDKLPTEDSLKALLYG 351 (860)
Q Consensus 275 ~~vFvID~S~~--~~~l~~l~~sL~~~L~~L-p~~~~VGlITFd~~V~vy~l~~~~~~~~~V~~g~~~p~~~~l~~l~~~ 351 (860)
-++||||.|.+ ...++.+++.++..++.| +.+.+||+|+|++.+++. +. + .+.
T Consensus 4 divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~~~-~~--------l---------~~~------ 59 (179)
T 1mjn_A 4 DLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTE-FD--------F---------SDY------ 59 (179)
T ss_dssp EEEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEEE-EC--------H---------HHH------
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCceeEE-Ec--------C---------ccc------
Confidence 46999999975 556888999999999888 456899999999877642 00 0 000
Q ss_pred CCccccchhhhHHHHHHHHhhhccCccccccCCCCCchHHHHHHHHH-HhcCCCcccccccccCCCCCcEEEEEeCCCCC
Q 002987 352 TGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALA-IIQGPSAEMSRGVVKRPGGNSRIIVCAGGPNT 430 (860)
Q Consensus 352 ~~~fL~pl~e~~~~i~~lL~~L~~~~~~~~~~~r~r~~G~AL~~A~~-lL~~~~~~~~~~~~k~~~~ggrIivF~sGppt 430 (860)
..+..+..+++.|+.. ...+.+|.||..|.. ++.... + .+.+..-.|+++++|.++
T Consensus 60 ---------~~~~~~~~~~~~i~~~-------~g~T~~~~aL~~a~~~~~~~~~-----g--~r~~~~~~iillTDG~~~ 116 (179)
T 1mjn_A 60 ---------VKRKDPDALLKHVKHM-------LLLTNTFGAINYVATEVFREEL-----G--ARPDATKVLIIITDGEAT 116 (179)
T ss_dssp ---------HHHCCHHHHHTTCCCC-------CBCCCHHHHHHHHHHHTSSGGG-----T--CCTTSEEEEEEEESSCCS
T ss_pred ---------CCHHHHHHHHHhcccC-------CCCChHHHHHHHHHHHhccccc-----C--CCCCCCeEEEEEcCCCCC
Confidence 0111234455666543 124889999999985 543210 0 000112357888999887
Q ss_pred CCCCCccCCCCCCCchhhhHhHHHHHHHHHHHHHhCCcEEEEEeecCCCC---Ccccchhhhccccc-EEEEeCCchh
Q 002987 431 YGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPV---RVPVLQPLAKASGG-VLVLHDDFGE 504 (860)
Q Consensus 431 ~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~~~~~v---~la~l~~L~~~TGG-~v~~y~~f~~ 504 (860)
.|.- . . .+.|+.|-.+..+.+.- +..+|..++..+|| .+|..++|++
T Consensus 117 ~~~~----------~----~-------------~~~~i~i~~igvG~~~~~~~~~~~L~~iA~~~~~~~~~~~~~~~~ 167 (179)
T 1mjn_A 117 DSGN----------I----D-------------AAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEK 167 (179)
T ss_dssp SCSC----------C----G-------------GGTTSEEEEEEESGGGCSHHHHHTTGGGSCSCHHHHEEEESSGGG
T ss_pred CCcc----------h----H-------------HHCCCEEEEEEccccccccccHHHHHHHhCCccHhcEEEeCCHHH
Confidence 6430 0 0 23577666666654321 13789999999987 5788888874
No 28
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=98.16 E-value=2.3e-07 Score=92.80 Aligned_cols=166 Identities=11% Similarity=0.111 Sum_probs=100.6
Q ss_pred CCcEEEEEECCCC--hhHHHHHHHHHHHhhhcC-CCCcEEEEEEECC-eEEEEecCCCCceeeecccCCCCCCHHHHHHH
Q 002987 273 SAPIILVIDECLD--EPHLQHLQSSLHAFVESI-PPTARIGIILYGR-TVSVYDFSEDSIASSDVLAGDKLPTEDSLKAL 348 (860)
Q Consensus 273 ~p~~vFvID~S~~--~~~l~~l~~sL~~~L~~L-p~~~~VGlITFd~-~V~vy~l~~~~~~~~~V~~g~~~p~~~~l~~l 348 (860)
+..++||||+|.+ ...++.+++.+...++.+ +++.+||||+|++ ..+ .+
T Consensus 5 ~~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~~------------~~--------------- 57 (189)
T 2x31_A 5 DRVLIFAVDASGSAAVARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQ------------VL--------------- 57 (189)
T ss_dssp CCEEEEEEECCTTSCC--CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCCC------------BC---------------
T ss_pred CeEEEEEEECCCCCCchHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCce------------Ee---------------
Confidence 3567999999976 357889999999998877 8899999999985 221 01
Q ss_pred hhcCCccccchhhhHHHHHHHHhhhccCccccccCCCCCchHHHHHHHHHHhcCCCcccccccccCCCCCcEEEEEeCCC
Q 002987 349 LYGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGGP 428 (860)
Q Consensus 349 ~~~~~~fL~pl~e~~~~i~~lL~~L~~~~~~~~~~~r~r~~G~AL~~A~~lL~~~~~~~~~~~~k~~~~ggrIivF~sGp 428 (860)
.|.......+...|+.|.. ...+.++.||..|..++..... .+....|+++++|.
T Consensus 58 --------~~~~~~~~~~~~~i~~l~~--------~g~T~~~~al~~a~~~l~~~~~---------~~~~~~ivliTDG~ 112 (189)
T 2x31_A 58 --------LQPSRSLTQTKRQLQGLPG--------GGGTPLASGMEMAMVTAKQARS---------RGMTPTIALLTDGR 112 (189)
T ss_dssp --------TTTCSCHHHHHHHHHHCCC--------CBCCCCHHHHHHHHHHHHTCTT---------TCSSEEEEECCBSC
T ss_pred --------cCCCCCHHHHHHHHhcCCC--------CCCCCHHHHHHHHHHHHHhccC---------CCCceEEEEECCCC
Confidence 1111223334455556643 1347899999999999975210 11245788888899
Q ss_pred CCCCCCCccCCCC-CCCchhhhHhHHHHHHHHHHHHHhCCcEEEEEeecCCCCCcccchhhhcccccEEEEeCCch
Q 002987 429 NTYGPGSVPHSFS-HPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKASGGVLVLHDDFG 503 (860)
Q Consensus 429 pt~GpG~l~~~~~-~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~~~~~v~la~l~~L~~~TGG~v~~y~~f~ 503 (860)
++.|...-..... .... .++++++.+.||.|..+.++.. +...|+.++..|||..++.++..
T Consensus 113 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~gi~v~~ig~g~~--~~~~L~~iA~~~~G~~~~~~~~~ 175 (189)
T 2x31_A 113 GNIALDGTANRELAGEQA-----------TKVARAIRASGMPAVIIDTAMR--PNPALVDLARTMDAHYIALPRAT 175 (189)
T ss_dssp CSSCCTHHHHHGGGTCCC-----------EEEEECTGGGGSCCTHHHHHHS--SCSSSCSTTTEEEESSTTTHHHH
T ss_pred CCCCCCccccccchhHHH-----------HHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHhcCCeEEECCCcc
Confidence 9887531000000 0000 0122223445554444444433 67789999999999876664443
No 29
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=98.05 E-value=2.8e-05 Score=94.11 Aligned_cols=182 Identities=13% Similarity=0.187 Sum_probs=108.9
Q ss_pred cEEEEEECCCC--hhHHHHHHHHHHHhhhcCC---CCcEEEEEEECCeEEEE-ecCCCCceeeecccCCCCCCHHHHHHH
Q 002987 275 PIILVIDECLD--EPHLQHLQSSLHAFVESIP---PTARIGIILYGRTVSVY-DFSEDSIASSDVLAGDKLPTEDSLKAL 348 (860)
Q Consensus 275 ~~vFvID~S~~--~~~l~~l~~sL~~~L~~Lp---~~~~VGlITFd~~V~vy-~l~~~~~~~~~V~~g~~~p~~~~l~~l 348 (860)
-++||||.|.+ ...++.+|+.++..++.|. .+.|||||+|++.+.+. .+.. +
T Consensus 245 div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~~~l~~--------------~-------- 302 (741)
T 3hrz_D 245 NIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSE--------------A-------- 302 (741)
T ss_dssp EEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTTS--------------G--------
T ss_pred eEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCceeEeecc--------------c--------
Confidence 47999999975 5568889999988887764 57999999999866432 1110 0
Q ss_pred hhcCCccccchhhhHHHHHHHHhhhccCccccccCCCCCchHHHHHHHHHHhcCCCcccccccccCCCCCcEEEEEeCCC
Q 002987 349 LYGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGGP 428 (860)
Q Consensus 349 ~~~~~~fL~pl~e~~~~i~~lL~~L~~~~~~~~~~~r~r~~G~AL~~A~~lL~~~~~~~~~~~~k~~~~ggrIivF~sGp 428 (860)
-...++.+.+.|+.|+.... .....+.+|.||..|..+|..... ..++..+ +..-.||++++|.
T Consensus 303 ----------~~~~~~~~~~~i~~l~~~~~---~~~ggT~~~~aL~~a~~~l~~~~~-~~~~~~~--~~~~~iillTDG~ 366 (741)
T 3hrz_D 303 ----------DSSNADWVTKQLNEINYEDH---KLKSGTNTKKALQAVYSMMSWPDD-VPPEGWN--RTRHVIILMTDGL 366 (741)
T ss_dssp ----------GGGCHHHHHHHHTTCCGGGG---SSSCCCCHHHHHHHHHHHHCCC---CCCTTGG--GEEEEEEEEECSC
T ss_pred ----------CCcCHHHHHHHHHhcccccc---cCCCChHHHHHHHHHHHHHhhhhh-ccccchh--ccCeEEEEECCCc
Confidence 01133445555666653211 013458999999999999842100 0000000 0112488899999
Q ss_pred CCCCCCCccCCCCCCCchhhh-HhHHHHHHHHHHHHHhCCcEEEEEeecCCCCCcccchhhhcccccE--EEEeCCchh
Q 002987 429 NTYGPGSVPHSFSHPNYLHME-KMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKASGGV--LVLHDDFGE 504 (860)
Q Consensus 429 pt~GpG~l~~~~~~~~~~~~e-k~a~~fY~~La~~~~~~gisVDiF~~~~~~v~la~l~~L~~~TGG~--v~~y~~f~~ 504 (860)
++.|..-.. ..+ -.......+.++++.+.||.|..+.++. .++-.+|..|+..+||. ++..+++++
T Consensus 367 ~n~g~~p~~---------~~~~i~~~~~~~~~a~~~~~~gi~i~~igvG~-~~~~~~L~~ia~~~~g~~~~~~~~~~~~ 435 (741)
T 3hrz_D 367 HNMGGDPIT---------VIDEIRDLLYIGKDRKNPREDYLDVYVFGVGP-LVNQVNINALASKKDNEQHVFKVKDMEN 435 (741)
T ss_dssp CCSSSCTHH---------HHHHHHHHTTCSSCTTCCCGGGEEEEEEECSS-SCCHHHHHHHSCCCTTCCCEECBSSHHH
T ss_pred cccCCCchH---------HHHHHHHHhhcccccccccccCeeEEEEeCCC-cCCHHHHHHHhcCCCCcceEEEeCCHHH
Confidence 887641100 000 0000111123445566777666666654 47788999999999995 888888763
No 30
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=98.05 E-value=5.4e-05 Score=76.52 Aligned_cols=153 Identities=16% Similarity=0.219 Sum_probs=94.6
Q ss_pred CcEEEEEECCCC--hhHHHHHHHHHHHhhhcC---CCCcEEEEEEECCeEEEE-ecCCCCceeeecccCCCCCCHHHHHH
Q 002987 274 APIILVIDECLD--EPHLQHLQSSLHAFVESI---PPTARIGIILYGRTVSVY-DFSEDSIASSDVLAGDKLPTEDSLKA 347 (860)
Q Consensus 274 p~~vFvID~S~~--~~~l~~l~~sL~~~L~~L---p~~~~VGlITFd~~V~vy-~l~~~~~~~~~V~~g~~~p~~~~l~~ 347 (860)
--++||||.|.+ ...++.+++.++..++.| +++.|||||+|++.++.. .+.. +
T Consensus 22 ~DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~~~~l~~--------------~------- 80 (199)
T 3zqk_A 22 LDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEYPFSE--------------A------- 80 (199)
T ss_dssp CEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEEEECTTS--------------C-------
T ss_pred cCEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccEEEecCC--------------c-------
Confidence 347999999975 457889999999999988 589999999999877642 1110 0
Q ss_pred HhhcCCccccchhhhHHHHHHHHhhhccCccccccCCCCCchHHHHHHHHHHhcCCCcccccccccCCCCCcEEEEEeCC
Q 002987 348 LLYGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGG 427 (860)
Q Consensus 348 l~~~~~~fL~pl~e~~~~i~~lL~~L~~~~~~~~~~~r~r~~G~AL~~A~~lL~~~~~~~~~~~~k~~~~ggrIivF~sG 427 (860)
..++.+.+.|+.++.. +...+.+|.||..|...+-... .+. +.+..-.|+++++|
T Consensus 81 -------------~~~~~~~~~i~~l~~~------gg~~T~~~~aL~~a~~~l~~~~----~g~--r~~~~~~iillTDG 135 (199)
T 3zqk_A 81 -------------QSKGDILQRLREIRYQ------GGNRTNTGLALRYLSDHSFLVS----QGD--REQAPNLVYMVTGN 135 (199)
T ss_dssp -------------CCHHHHHHHHHHCCCC------CCSCCCHHHHHHHCCCCCTCGG----GTC--CTTSCEEEEEEECS
T ss_pred -------------CCHHHHHHHHHhCcCC------CCCcChHHHHHHHHHHHhhCcc----cCC--CCCCCeEEEEEeCC
Confidence 1122344455555432 1124889999999887532110 000 01112357778888
Q ss_pred CCCCCCCCccCCCCCCCchhhhHhHHHHHHHHHHHHHhCCcEEEEEeecC-CCCCcccchhhhcccccEEEEeCCchh
Q 002987 428 PNTYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGN-CPVRVPVLQPLAKASGGVLVLHDDFGE 504 (860)
Q Consensus 428 ppt~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~~~-~~v~la~l~~L~~~TGG~v~~y~~f~~ 504 (860)
.++.. + . . + ..|+ .+|+++. ...+..+|..++. +|..++.++|++
T Consensus 136 ~~~d~---v-----~-~--------------~-----~~~v--~v~~iGiG~~~~~~~L~~iA~--~~~~~~~~~~~~ 181 (199)
T 3zqk_A 136 PASDE---I-----K-R--------------L-----PGDI--QVVPIGVGPNANVQELERIGW--PNAPILIQDFET 181 (199)
T ss_dssp CCSSC---C-----C-C--------------C-----CTTE--EEEEEEESTTCCHHHHHHHHT--TSCCEEESCTTT
T ss_pred CCchH---H-----H-H--------------H-----hCCC--EEEEEEcCCCCCHHHHHHHhC--CCceEEeCCHHH
Confidence 64211 0 0 0 0 1454 4555443 2678899999997 555678888874
No 31
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=97.87 E-value=0.0002 Score=70.85 Aligned_cols=145 Identities=14% Similarity=0.195 Sum_probs=87.9
Q ss_pred CcEEEEEECCCC--hhHHHHHHHHHHHhhhcCC---CCcEEEEEEECCeEEEE-ecCCCCceeeecccCCCCCCHHHHHH
Q 002987 274 APIILVIDECLD--EPHLQHLQSSLHAFVESIP---PTARIGIILYGRTVSVY-DFSEDSIASSDVLAGDKLPTEDSLKA 347 (860)
Q Consensus 274 p~~vFvID~S~~--~~~l~~l~~sL~~~L~~Lp---~~~~VGlITFd~~V~vy-~l~~~~~~~~~V~~g~~~p~~~~l~~ 347 (860)
.-++||||.|.+ ...++.+++.+...++.|+ +..+||+|+|++.+++. .+..
T Consensus 18 ~divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~~~l~~---------------------- 75 (178)
T 2xgg_A 18 LDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQWDLQS---------------------- 75 (178)
T ss_dssp EEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTS----------------------
T ss_pred eeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEEEeCCC----------------------
Confidence 457999999975 5678899999999998885 46999999999877532 1110
Q ss_pred HhhcCCccccchhhhHHHHHHHHhhhccCccccccCCCCCchHHHHHHHHHHhcCCCcccccccccCCCCCcEEEEEeCC
Q 002987 348 LLYGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGG 427 (860)
Q Consensus 348 l~~~~~~fL~pl~e~~~~i~~lL~~L~~~~~~~~~~~r~r~~G~AL~~A~~lL~~~~~~~~~~~~k~~~~ggrIivF~sG 427 (860)
+ . ...++.+...|+.++.. ...+.+|.||+.|...|..... +. +.+....|+++++|
T Consensus 76 -------~-~--~~~~~~~~~~i~~l~~~-------~g~T~~~~aL~~a~~~l~~~~~----g~--r~~~~~~iillTDG 132 (178)
T 2xgg_A 76 -------P-N--AVDKQLAAHAVLDMPYK-------KGSTNTSDGLKACKQILFTGSR----PG--REHVPKLVIGMTDG 132 (178)
T ss_dssp -------G-G--GSCHHHHHHHHHHCCCC-------CCCCCHHHHHHHHHHHHHHCCC----TT--CTTSCEEEEEEESS
T ss_pred -------C-C--ccCHHHHHHHHHhCCCC-------CCCccHHHHHHHHHHHhcCccc----CC--CCCCCEEEEEEcCC
Confidence 0 0 01233444555666421 2358899999999997632100 00 01123568888888
Q ss_pred CCCCCCCCccCCCCCCCchhhhHhHHHHHHHHHHHHHhCCcEEEEEeecCCCCCcccc
Q 002987 428 PNTYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVL 485 (860)
Q Consensus 428 ppt~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~~~~~v~la~l 485 (860)
.++.| .-.++.++++.+.||.|..+.++.+ +|-..|
T Consensus 133 ~~~~~---------------------~~~~~~~~~l~~~gi~v~~igvG~~-~~~~~l 168 (178)
T 2xgg_A 133 ESDSD---------------------FRTVRAAKEIRELGGIVTVLAVGHY-VAAALV 168 (178)
T ss_dssp CCCHH---------------------HHHSHHHHHHHHTTCEEEEEECC---------
T ss_pred CCCCC---------------------ccHHHHHHHHHHCCCEEEEEEcCCc-CCHHHH
Confidence 76532 0124566777788988877777643 444444
No 32
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=97.58 E-value=0.00013 Score=91.93 Aligned_cols=163 Identities=12% Similarity=0.168 Sum_probs=102.1
Q ss_pred cEEEEEECCCC--hhHHHHHHHHHHHhhhcCCC-CcEEEEEEECCeEEEE-ecCCCCceeeecccCCCCCCHHHHHHHhh
Q 002987 275 PIILVIDECLD--EPHLQHLQSSLHAFVESIPP-TARIGIILYGRTVSVY-DFSEDSIASSDVLAGDKLPTEDSLKALLY 350 (860)
Q Consensus 275 ~~vFvID~S~~--~~~l~~l~~sL~~~L~~Lp~-~~~VGlITFd~~V~vy-~l~~~~~~~~~V~~g~~~p~~~~l~~l~~ 350 (860)
-++||||.|.+ ...++.+|+.+++.++.+.+ ..|||||+|++.+++. .+. +..
T Consensus 132 DIvfvlD~SgSm~~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~~~~~lt-------------------~~~---- 188 (1095)
T 3k6s_A 132 DIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFE-------------------EFR---- 188 (1095)
T ss_dssp EEEEEEECCTTSCSHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEEEEECSH-------------------HHH----
T ss_pred cEEEEEcCCCCCChhHHHHHHHHHHHHHHhccccccEEEEEEECCeEEEEecCc-------------------ccC----
Confidence 46999999975 55688999999999998875 4999999999877542 111 000
Q ss_pred cCCccccchhhhHHHHHHHHhhhccCccccccCCCCCchHHHHHHHHHHhcCCCcccccccccCCCCCcEEEEEeCCCCC
Q 002987 351 GTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGGPNT 430 (860)
Q Consensus 351 ~~~~fL~pl~e~~~~i~~lL~~L~~~~~~~~~~~r~r~~G~AL~~A~~lL~~~~~~~~~~~~k~~~~ggrIivF~sGppt 430 (860)
.+..+..+++.|+.. ...+.+|.||..|...+-.... |. +.+..-.|+++++|..+
T Consensus 189 -----------~~~~l~~ai~~i~~~-------gG~T~~g~AL~~a~~~lf~~~~----g~--R~~~~kviIllTDG~~~ 244 (1095)
T 3k6s_A 189 -----------RSSNPLSLLASVHQL-------QGFTYTATAIQNVVHRLFHASY----GA--RRDAAKILIVITDGKKE 244 (1095)
T ss_dssp -----------SCSCGGGGTTTCCCC-------CSCBCHHHHHHHHHTTTTSTTT----TC--CSSSEEEEEEEESSCCB
T ss_pred -----------CHHHHHHHHhhhhcc-------cCCChHHHHHHHHHHhhccccc----cC--CCCCCeEEEEEeCCCcC
Confidence 000111223334321 2348999999999875422100 00 00111247778888765
Q ss_pred CCCCCccCCCCCCCchhhhHhHHHHHHHHHHHHHhCCcEEEEEeecCC---CCCcccchhhhccccc-EEEEeCCchh
Q 002987 431 YGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNC---PVRVPVLQPLAKASGG-VLVLHDDFGE 504 (860)
Q Consensus 431 ~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~~~~---~v~la~l~~L~~~TGG-~v~~y~~f~~ 504 (860)
..+. . +++.++++.+.||.|-.+..+.+ .++..+|..++..++| .++..++|++
T Consensus 245 ~d~~---------~-----------~~~~a~~~r~~GI~i~aIGVG~~~~~~~d~~eL~~IAs~p~g~~vf~v~d~~~ 302 (1095)
T 3k6s_A 245 GDSL---------D-----------YKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDA 302 (1095)
T ss_dssp SCSS---------C-----------HHHHHHHHHHHCEEECCEEBSSGGGSTTSSHHHHTTSCSSTTTSCCCBSCSGG
T ss_pred CCch---------h-----------HHHHHHHHHHCCCEEEEEecccccccccCHHHHHHHHcCCCCceEEEcCCHHH
Confidence 2110 0 23456666777877665566554 2588999999999887 7777788864
No 33
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=97.54 E-value=5.7e-05 Score=88.86 Aligned_cols=196 Identities=11% Similarity=0.165 Sum_probs=110.8
Q ss_pred CcEEEEEECCCCh--------hHHHHHHHHHHHhhhc---CCCCcEEEEEEECCeEEEEecCCC-CceeeecccCCCCCC
Q 002987 274 APIILVIDECLDE--------PHLQHLQSSLHAFVES---IPPTARIGIILYGRTVSVYDFSED-SIASSDVLAGDKLPT 341 (860)
Q Consensus 274 p~~vFvID~S~~~--------~~l~~l~~sL~~~L~~---Lp~~~~VGlITFd~~V~vy~l~~~-~~~~~~V~~g~~~p~ 341 (860)
-.+|||||+|.+- ..|+.+++.+...++. ..++-+||||+|++.-.-..+... ......
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d~~y~~i~--------- 78 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNIT--------- 78 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTCSTTEE---------
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccccCCCceE---------
Confidence 3579999999641 3788899999888883 567899999999854321111100 000000
Q ss_pred HHHHHHHhhcCCccccchhhh-HHHHHHHHhh-hccCccccccCCCCCchHHHHHHHHHHhcCCCcccccccccCCCCCc
Q 002987 342 EDSLKALLYGTGVYLSPMHAS-KQVAHDIFSS-LRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNS 419 (860)
Q Consensus 342 ~~~l~~l~~~~~~fL~pl~e~-~~~i~~lL~~-L~~~~~~~~~~~r~r~~G~AL~~A~~lL~~~~~~~~~~~~k~~~~gg 419 (860)
.+.++... ...+.. |+. |.. +....++|.||.+|..+++.... +.....-
T Consensus 79 -------------vl~~l~~~~~~~l~~-l~~~l~~-------~~~~t~i~~al~~A~~~l~~~~~-------~~k~~~k 130 (565)
T 1jey_B 79 -------------VHRHLMLPDFDLLED-IESKIQP-------GSQQADFLDALIVSMDVIQHETI-------GKKFEKR 130 (565)
T ss_dssp -------------EEEEEECCCHHHHHH-HHTTCCC-------CSSCCCHHHHHHHHHHHHHHHSS-------SSCCSEE
T ss_pred -------------EeecCCCCCHHHHHH-HHhhccC-------CCccccHHHHHHHHHHHHHHHhh-------ccccccc
Confidence 12233211 122222 222 321 22358899999999999975210 0000124
Q ss_pred EEEEEeCCCCCCCCCCccCCCCCCCchhhhHhHHHHHHHHHHHHHhCCcEEE-EEeecCCC----C--------------
Q 002987 420 RIIVCAGGPNTYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVID-ILCAGNCP----V-------------- 480 (860)
Q Consensus 420 rIivF~sGppt~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVD-iF~~~~~~----v-------------- 480 (860)
||++||+|-.+.|... ..++++.+.+.||.|+ ++.++.+. +
T Consensus 131 rIiLlTDg~~~~~~~~--------------------~~~~a~~l~~~gI~i~~vig~g~~~~~~~~~~~~~~~~~~~~~~ 190 (565)
T 1jey_B 131 HIEIFTDLSSRFSKSQ--------------------LDIIIHSLKKCDISLQFFLPFSLGKEDGSGDRGDGPFRLGGHGP 190 (565)
T ss_dssp EEEEECCCCSCCCCTT--------------------HHHHHHHHHHTTEEEEEEESSCCC----------CCCCTTCSSC
T ss_pred EEEEEeCCCCCCCHHH--------------------HHHHHHHHHhcCcEEEEEeccCCCcCCccccccccccccccccc
Confidence 8999999876553210 2467889999999999 66555431 1
Q ss_pred ----C---------cccchhhhccccc-----EEEEeCCchhHHHHHHHHHHhcccccceEEEEE
Q 002987 481 ----R---------VPVLQPLAKASGG-----VLVLHDDFGEAFGVNLQRASTRAAGSHGFLEIR 527 (860)
Q Consensus 481 ----~---------la~l~~L~~~TGG-----~v~~y~~f~~~f~~dL~r~l~r~~g~~a~lrVR 527 (860)
+ ...|..+++.||| .++..++.-+.+ ..+++...|.+.|.+.|++-
T Consensus 191 ~f~~~~~~~~~~~~e~~L~~ia~~~~G~~~~s~~~~~~~~~~~l-~~~k~~~~r~~~~~g~l~lg 254 (565)
T 1jey_B 191 SFPLKGITEQQKEGLEIVKMVMISLEGEDGLDEIYSFSESLRKL-CVFKKIERHSIHWPCRLTIG 254 (565)
T ss_dssp CCCTTTSCHHHHHHHHHHHHHHHHHHCGGGGGGEEEHHHHTTSS-TTTGGGCCCCCCEEEEEEET
T ss_pred ccchhccccchhhhHHHHHHHHHhcCCCcccceeecHHHHHHHh-ccCcceeecccccccceEEC
Confidence 1 1126778888888 565543221111 11223334556788877664
No 34
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=97.34 E-value=0.00079 Score=61.06 Aligned_cols=77 Identities=14% Similarity=0.200 Sum_probs=54.1
Q ss_pred cccceeeccCCc--cccCCccccccCCCcEEEEeCCcEEEEEeCCcccCCccchHHHHHHHHHHHHHHHh-ccCCCcEEE
Q 002987 726 APRCLMYREGGT--FEELPAYDLAMQSDKAVVLDHGTDVFIWLGAELAADEGRSAAALAACRTLAEELSE-FRFPAPRIL 802 (860)
Q Consensus 726 yP~L~~~~~~~~--~~~lP~~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~~~~~~~~~l~~~~~~a~~l~~-~R~p~Pr~i 802 (860)
.|+||.++-.+. ..++|....+|.++.+||||+|..||+|+|+..+..+ ..+.+..|+.|.. +|-....+.
T Consensus 2 ~~rL~~v~g~~~~~~~eV~~~~~sLns~d~FILd~g~~iyvW~G~~s~~~E------k~~A~~~a~~i~~~er~~~~~i~ 75 (104)
T 1kcq_A 2 VQRLFQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRYE------RLKATQVSKGIRDNERSGRARVH 75 (104)
T ss_dssp CCEEEEEEESSSEEEEEECSSGGGCCTTSEEEEECSSEEEEEECTTCCHHH------HHHHHHHHHHHHHHTSTTCSEEE
T ss_pred CcEEEEEECCCcEEEEEecCCHHHcCCCCeEEEeCCCEEEEEeCCCCCHHH------HHHHHHHHHHHHhhccCCCCcEE
Confidence 378888765433 2246667789999999999999999999999976422 3445566666653 555555666
Q ss_pred EEecCC
Q 002987 803 AFKVLF 808 (860)
Q Consensus 803 ~~~qg~ 808 (860)
+++||.
T Consensus 76 ~v~eG~ 81 (104)
T 1kcq_A 76 VSEEGT 81 (104)
T ss_dssp EEETTC
T ss_pred EEeCCC
Confidence 666665
No 35
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=96.88 E-value=0.002 Score=59.41 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=53.4
Q ss_pred cccceeeccCCc--cccCCccccccCCCcEEEEeCCcEEEEEeCCcccCCccchHHHHHHHHHHHHHHHhccCCCcEEEE
Q 002987 726 APRCLMYREGGT--FEELPAYDLAMQSDKAVVLDHGTDVFIWLGAELAADEGRSAAALAACRTLAEELSEFRFPAPRILA 803 (860)
Q Consensus 726 yP~L~~~~~~~~--~~~lP~~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~~~~~~~~~l~~~~~~a~~l~~~R~p~Pr~i~ 803 (860)
.|+||.++-... ..++|....+|.++.+||||+|..||+|+|+..+..+ ..+.+..|+.|..+|--...+.+
T Consensus 12 ~~rL~~v~G~~~~~~~eV~~~~ssLns~D~FILd~g~~iyvW~G~~ss~~E------k~~A~~~a~~i~~er~g~~~i~v 85 (114)
T 1svq_A 12 KPRLLHISGDKNAKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSSPQE------KNKAAEVARAIDAERKGLPKVEV 85 (114)
T ss_dssp CEEEEEEECTTSCEEEEECCCSSSCCTTSEEEEEETTEEEECCCTTCCHHH------HHHHHHHHHHHHHHHTTCSEEEE
T ss_pred CcEEEEEECCCcEEEEEecCCHHHcCCCCeEEEecCCEEEEEeCCCCCHHH------HHHHHHHHHHhhhccCCCccEEE
Confidence 478888863321 2346667789999999999999999999999976422 34455666767556644445666
Q ss_pred EecCC
Q 002987 804 FKVLF 808 (860)
Q Consensus 804 ~~qg~ 808 (860)
++||.
T Consensus 86 v~eg~ 90 (114)
T 1svq_A 86 FCETD 90 (114)
T ss_dssp CCCCT
T ss_pred EeCCC
Confidence 55554
No 36
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=95.99 E-value=0.009 Score=66.95 Aligned_cols=83 Identities=23% Similarity=0.347 Sum_probs=52.8
Q ss_pred hcccceeeccC-Cccc--cC-CccccccCCCcEEEEeCCcEEEEEeCCcccCCccchHHHHHHHHHHHHHHHhccCCCcE
Q 002987 725 VAPRCLMYREG-GTFE--EL-PAYDLAMQSDKAVVLDHGTDVFIWLGAELAADEGRSAAALAACRTLAEELSEFRFPAPR 800 (860)
Q Consensus 725 iyP~L~~~~~~-~~~~--~l-P~~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~~~~~~~~~l~~~~~~a~~l~~~R~p~Pr 800 (860)
..||||..++. |.+. ++ |.....|.++.+||||+|..||||+|+.++..+ -+..++...+.++.....|-+.-.
T Consensus 281 ~~~rLf~~s~~~G~~~v~EV~~f~Q~dL~~~dv~ILD~g~~IfVW~G~~as~~E--r~~Al~~A~~yi~~~~~~r~~~tp 358 (398)
T 3fg7_A 281 ITPRLFECSNKTGRFLATEIPDFNQDDLEEDDVFLLDVWDQVFFWIGKHANEEE--KKAAATTAQEYLKTHPSGRDPETP 358 (398)
T ss_dssp CCCEEEEEECTTSSCEEEECTTCCGGGCCTTSEEEEECSSCEEEEECTTCCHHH--HHHHHHHHHHHHHHSSSSCCTTCC
T ss_pred ccCeeEEEEcCCCCEEEEEecccCHHHCCCCCEEEEeCCCEEEEEECCCCCHHH--HHHHHHHHHHHHHhCcccCCCCCC
Confidence 58999988764 4442 33 334456889999999999999999999976422 133344444444443334543323
Q ss_pred EEEEecCCC
Q 002987 801 ILAFKVLFC 809 (860)
Q Consensus 801 ~i~~~qg~s 809 (860)
+.++.||..
T Consensus 359 i~~V~eG~E 367 (398)
T 3fg7_A 359 IIVVKQGHE 367 (398)
T ss_dssp EEEEETTCC
T ss_pred EEEEcCCCC
Confidence 456667765
No 37
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=95.96 E-value=0.0066 Score=66.77 Aligned_cols=83 Identities=24% Similarity=0.374 Sum_probs=49.6
Q ss_pred hcccceeeccC-Cccc--cC--CccccccCCCcEEEEeCCcEEEEEeCCcccCCccchHHHHHHHHHHHHHHHhccCCCc
Q 002987 725 VAPRCLMYREG-GTFE--EL--PAYDLAMQSDKAVVLDHGTDVFIWLGAELAADEGRSAAALAACRTLAEELSEFRFPAP 799 (860)
Q Consensus 725 iyP~L~~~~~~-~~~~--~l--P~~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~~~~~~~~~l~~~~~~a~~l~~~R~p~P 799 (860)
..|+||..++. |.+. ++ |.....|.++.+||||+|..||||+|+.++..+ -+..++...+.++.....|-+..
T Consensus 227 ~~~rLf~~s~~~G~~~v~ev~~~f~q~dL~~~dv~iLD~g~~IfVW~G~~as~~e--r~~A~~~A~~y~~~~~~~r~~~t 304 (344)
T 2fh1_A 227 HPPRLFACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEE--KTEALTSAKRYIETDPANRDRRT 304 (344)
T ss_dssp CCCEEEEEECTTSSCEEEEECSSCCGGGSCTTSEEEEECSSCEEEEECTTCCHHH--HHHHHHHHHHHHHTC-------C
T ss_pred cCCEEEEEEcCCCCEEEEEccCCcCHhHCCCCCEEEEeCCCEEEEEECCCCCHHH--HHHHHHHHHHHHHhCccCCCCCC
Confidence 67999988753 4432 33 334456899999999999999999999976432 13333333334433222454333
Q ss_pred EEEEEecCCC
Q 002987 800 RILAFKVLFC 809 (860)
Q Consensus 800 r~i~~~qg~s 809 (860)
.+..+.||..
T Consensus 305 ~i~~V~eG~E 314 (344)
T 2fh1_A 305 PITVVKQGFE 314 (344)
T ss_dssp CEEEEETTCC
T ss_pred cEEEEcCCCC
Confidence 4556666665
No 38
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=95.68 E-value=0.021 Score=62.75 Aligned_cols=79 Identities=22% Similarity=0.272 Sum_probs=51.4
Q ss_pred hcccceeecc-CCccc--cC----CccccccCCCcEEEEeCC--cEEEEEeCCcccCCccchHHHHHHHHHHHHHHHh--
Q 002987 725 VAPRCLMYRE-GGTFE--EL----PAYDLAMQSDKAVVLDHG--TDVFIWLGAELAADEGRSAAALAACRTLAEELSE-- 793 (860)
Q Consensus 725 iyP~L~~~~~-~~~~~--~l----P~~~~sl~~d~iyLLD~g--~~i~Iw~G~~v~~~~~~~~~~l~~~~~~a~~l~~-- 793 (860)
-.|+||.+++ .|.+. ++ |.....|.++.+||||+| ..||||+|+.++.++ ..+....|++..+
T Consensus 246 ~~~rLy~vs~~~G~~~v~ev~~~~~~~q~~L~s~dv~ILD~g~~~~IyVW~G~~a~~~e------r~~A~~~A~~y~~~~ 319 (347)
T 1j72_A 246 QAAALYKVSDATGQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKANEKE------RQAALQVAEGFISRM 319 (347)
T ss_dssp CCCEEEEEECTTSSCEEEEEECSSSBCGGGCCTTSEEEEECGGGSEEEEEECTTCCHHH------HHHHHHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCEEEEeeccCCCCCHHHcCCCCEEEEecCCCcEEEEEeCCCCCHHH------HHHHHHHHHHHHHhc
Confidence 4699999874 34432 23 555677999999999999 999999999976422 2223334444322
Q ss_pred ccCCCcEEEEEecCCC
Q 002987 794 FRFPAPRILAFKVLFC 809 (860)
Q Consensus 794 ~R~p~Pr~i~~~qg~s 809 (860)
.|.+...+.++.||..
T Consensus 320 ~rp~~~~i~~v~eG~E 335 (347)
T 1j72_A 320 QYAPNTQVEILPQGRE 335 (347)
T ss_dssp TCCTTCEEEEEETTCC
T ss_pred CCCCCCeEEEEcCCCC
Confidence 3444455666666654
No 39
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=95.42 E-value=0.02 Score=59.37 Aligned_cols=45 Identities=7% Similarity=0.261 Sum_probs=37.9
Q ss_pred CCcEEEEEECCCC-hhHHHHHHHHHHHhhhcCC---CCcEEEEEEECCe
Q 002987 273 SAPIILVIDECLD-EPHLQHLQSSLHAFVESIP---PTARIGIILYGRT 317 (860)
Q Consensus 273 ~p~~vFvID~S~~-~~~l~~l~~sL~~~L~~Lp---~~~~VGlITFd~~ 317 (860)
+..+|||||+|.+ .+.++.+|++++..+..++ .+.+||||+|++.
T Consensus 134 ~~~vvfLVDtSgSM~~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~ 182 (242)
T 3rag_A 134 ALHLVVCLDTSASMRDKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGK 182 (242)
T ss_dssp CEEEEEEEECSGGGTTTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCS
T ss_pred CCCEEEEEECcccHHHHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCC
Confidence 4568999999986 4679999999999988765 5789999999854
No 40
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}
Probab=95.41 E-value=0.0094 Score=66.20 Aligned_cols=48 Identities=29% Similarity=0.576 Sum_probs=37.0
Q ss_pred hcccceeeccC-Ccc--ccCC--ccccccCCCcEEEEeCCcEEEEEeCCcccC
Q 002987 725 VAPRCLMYREG-GTF--EELP--AYDLAMQSDKAVVLDHGTDVFIWLGAELAA 772 (860)
Q Consensus 725 iyP~L~~~~~~-~~~--~~lP--~~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~ 772 (860)
..|+||..++. |.+ ++++ .....|.++.+||||+|..||||+|+.++.
T Consensus 268 ~~~rLf~~s~~~G~~~v~ev~~~f~Q~dL~~~dv~ILD~~~~IfVW~G~~as~ 320 (371)
T 3fg6_A 268 HPPRLYGCSNKTGRFVIEEIPGEFTQDDLAEDDVMLLDAWEQIFIWIGKDANE 320 (371)
T ss_dssp SCCEEEEEECTTSSCEEEECCSSCCGGGSCTTSEEEEECSSCEEEEECTTCCH
T ss_pred cCcEEEEEEcCCCcEEEEEecccccHhHCCCCCEEEEeCCCEEEEEECCCCCH
Confidence 45899988763 544 2343 344568999999999999999999999764
No 41
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=95.36 E-value=0.3 Score=57.68 Aligned_cols=160 Identities=11% Similarity=0.111 Sum_probs=89.7
Q ss_pred cEEEEEECCCC---------hhHHHHHHHHHHHhhhcC---CCCcEEEEEEECCeEEEEecCCCCceeeecccCCCCCCH
Q 002987 275 PIILVIDECLD---------EPHLQHLQSSLHAFVESI---PPTARIGIILYGRTVSVYDFSEDSIASSDVLAGDKLPTE 342 (860)
Q Consensus 275 ~~vFvID~S~~---------~~~l~~l~~sL~~~L~~L---p~~~~VGlITFd~~V~vy~l~~~~~~~~~V~~g~~~p~~ 342 (860)
.+||+||+|.+ ...|+.+++.+...+... -++-+||||.|++.-+-..+.. ...+++.....++.
T Consensus 37 ~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~~---d~i~v~~~L~~~~~ 113 (609)
T 1jey_A 37 SLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNF---KNIYVLQELDNPGA 113 (609)
T ss_dssp EEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCC---TTEEEEEEEECCCH
T ss_pred EEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCCC---CCeEEEecCCCCCH
Confidence 47999999953 126888888888777641 3578999999986542111111 11222221222344
Q ss_pred HHHHHHhhcCCccccchhhhHHHHHHHHhhhccCccccccCCCCCchHHHHHHHHHHhcCCCcccccccccCCCCCcEEE
Q 002987 343 DSLKALLYGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRII 422 (860)
Q Consensus 343 ~~l~~l~~~~~~fL~pl~e~~~~i~~lL~~L~~~~~~~~~~~r~r~~G~AL~~A~~lL~~~~~~~~~~~~k~~~~ggrIi 422 (860)
+.++.+. .+.+ .+ -.+.+..... .....++|.||.+|..+++.... +. ..=||+
T Consensus 114 ~~ik~l~--------~l~~-~~----~~~~~~~~~g----~~~~t~l~daL~~a~~~f~~~~~--------k~-~~k~Ii 167 (609)
T 1jey_A 114 KRILELD--------QFKG-QQ----GQKRFQDMMG----HGSDYSLSEVLWVCANLFSDVQF--------KM-SHKRIM 167 (609)
T ss_dssp HHHHHHH--------TTSH-HH----HHHHHHHHHC----CSCCCCHHHHHHHHHHHHHTCSS--------CE-EEEEEE
T ss_pred HHHHHHH--------HHhh-cc----cchhhhhhcC----CCCCCCHHHHHHHHHHHHHhhch--------hh-cCCEEE
Confidence 4443321 1100 00 0001111000 02348899999999999986311 00 134899
Q ss_pred EEeCCCCCCCCCCccCCCCCCCchhhhHhHHHHHHHHHHHHHhCCcEEEEEeecCC
Q 002987 423 VCAGGPNTYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNC 478 (860)
Q Consensus 423 vF~sGppt~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~~~~ 478 (860)
+||+|-.+.|. . +....-....|+.+.+.||.|.+|.++..
T Consensus 168 L~TDg~~p~~~-----------~----~~~~~~~~~~a~~l~~~gI~i~~igig~~ 208 (609)
T 1jey_A 168 LFTNEDNPHGN-----------D----SAKASRARTKAGDLRDTGIFLDLMHLKKP 208 (609)
T ss_dssp EEESCSCTTTT-----------C----HHHHHHHHHHHHHHHHHTEEEEEEEBCCT
T ss_pred EEcCCCCCCCC-----------c----hHHHHHHHHHHHHHHhcCcEEEEEecCCC
Confidence 99998654421 0 11112235688899999999999988754
No 42
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=94.51 E-value=0.073 Score=65.49 Aligned_cols=150 Identities=11% Similarity=0.123 Sum_probs=76.0
Q ss_pred CcEEEEEECCCC--h-h-----HHHHHHHHHHHhhhcCC--CCcEEEEEEECCeEEEE---ecCCCCce-eeecccCCCC
Q 002987 274 APIILVIDECLD--E-P-----HLQHLQSSLHAFVESIP--PTARIGIILYGRTVSVY---DFSEDSIA-SSDVLAGDKL 339 (860)
Q Consensus 274 p~~vFvID~S~~--~-~-----~l~~l~~sL~~~L~~Lp--~~~~VGlITFd~~V~vy---~l~~~~~~-~~~V~~g~~~ 339 (860)
--+|||||+|.+ . . .++.++++++..++.|. ++.|||||+|++.+... .+...... .....++...
T Consensus 225 ~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a~~~~~~~v~~~~~~~~g~~~n~~~~ 304 (893)
T 2ww8_A 225 LDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTIFDGTEFTVEKGVADKNGKRLNDSLF 304 (893)
T ss_dssp EEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSBCBSCEEEEECCEECTTCCEECCCTT
T ss_pred ccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCccccccccccccccccccccccccccc
Confidence 357999999975 1 1 47788888888888764 58999999999865320 11000000 0000000000
Q ss_pred CCHHHHHHHhhcCCcc-ccchhhhHHHHHHHHhhhccCcccc-----ccCCCCCchHHHHHHHHHHhcCCCccccccccc
Q 002987 340 PTEDSLKALLYGTGVY-LSPMHASKQVAHDIFSSLRPYKLNI-----TEASRDRCLGTAVEVALAIIQGPSAEMSRGVVK 413 (860)
Q Consensus 340 p~~~~l~~l~~~~~~f-L~pl~e~~~~i~~lL~~L~~~~~~~-----~~~~r~r~~G~AL~~A~~lL~~~~~~~~~~~~k 413 (860)
...++ ..+-.....| ..|+......+..+.+.|....... ......+.+|.||..|..+|+...
T Consensus 305 w~~~~-t~~t~~~~~~~~lpLT~d~~~i~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~lL~~~~--------- 374 (893)
T 2ww8_A 305 WNYDQ-TSFTTNTKDYSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQA--------- 374 (893)
T ss_dssp SCTTC-CEEEEECCBCCEEEEECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHHHHHHS---------
T ss_pred ccccc-ccccccccccccccccCCHHHHHHHHHHHhhhccccccccccccCCCChHHHHHHHHHHHHHhhc---------
Confidence 00000 0000000001 2345444545554444444321100 001235899999999999996310
Q ss_pred CCCCCcEEEEEeCCCCCCCC
Q 002987 414 RPGGNSRIIVCAGGPNTYGP 433 (860)
Q Consensus 414 ~~~~ggrIivF~sGppt~Gp 433 (860)
+.+....||++++|.++.+-
T Consensus 375 ~~~~~kvIILLTDG~pt~~~ 394 (893)
T 2ww8_A 375 RQNSQKVIFHITDGVPTMSY 394 (893)
T ss_dssp CSSSEEEEEEEESSCCSEEC
T ss_pred ccCCCeEEEEEcCCCCCccc
Confidence 00122357777889999654
No 43
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*
Probab=94.35 E-value=0.036 Score=66.90 Aligned_cols=85 Identities=22% Similarity=0.359 Sum_probs=54.4
Q ss_pred HhhcccceeeccC-Cccc--cC--CccccccCCCcEEEEeCCcEEEEEeCCcccCCccchHHHHHHHHHHHHHHHhccCC
Q 002987 723 RMVAPRCLMYREG-GTFE--EL--PAYDLAMQSDKAVVLDHGTDVFIWLGAELAADEGRSAAALAACRTLAEELSEFRFP 797 (860)
Q Consensus 723 ~~iyP~L~~~~~~-~~~~--~l--P~~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~~~~~~~~~l~~~~~~a~~l~~~R~p 797 (860)
.+..||||..++. |.|. ++ +.....|.++.+||||+|..||||+|+.++..+. +..++...+.++.....|-+
T Consensus 610 ~~~~~rLf~~s~~~G~~~v~ev~~~f~Q~dL~~~dv~iLD~~~eifvWiG~~a~~~er--~~al~~A~~Y~~~~~~~r~~ 687 (729)
T 1d0n_A 610 DAHPPRLFACSNKIGRFVIEEVPGEFMQEDLATDDVMLLDTWDQVFVWVGKDSQDEEK--TEALTSAKRYIDTDPAHRDR 687 (729)
T ss_dssp HHSCCEEEEEECTTTCCEEEECCSSCCGGGCCTTSEEEEECSSCEEEEECTTSCHHHH--SSHHHHHHHHHHHCTTCCCT
T ss_pred cccCCeEEEEEcCCCcEEEEEecCcccHhHCCCCCEEEEeCCCEEEEEECCCCCHHHH--HHHHHHHHHHHHhCcccCCC
Confidence 3678999988753 4443 23 3334568899999999999999999999764321 23344444555543345644
Q ss_pred CcEEEEEecCCC
Q 002987 798 APRILAFKVLFC 809 (860)
Q Consensus 798 ~Pr~i~~~qg~s 809 (860)
.-.++.+.||..
T Consensus 688 ~~pi~~V~~G~E 699 (729)
T 1d0n_A 688 RTPITVVKQGFE 699 (729)
T ss_dssp TCCEEEEETTCC
T ss_pred CCcEEEEeCCCC
Confidence 334445566655
No 44
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=93.93 E-value=0.14 Score=56.17 Aligned_cols=78 Identities=15% Similarity=0.137 Sum_probs=57.7
Q ss_pred cccceeeccCCc--cccCCccccccCCCcEEEEeCCcEEEEEeCCcccCCccchHHHHHHHHHHHHHHH-hccCCCcEEE
Q 002987 726 APRCLMYREGGT--FEELPAYDLAMQSDKAVVLDHGTDVFIWLGAELAADEGRSAAALAACRTLAEELS-EFRFPAPRIL 802 (860)
Q Consensus 726 yP~L~~~~~~~~--~~~lP~~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~~~~~~~~~l~~~~~~a~~l~-~~R~p~Pr~i 802 (860)
.++||.++-... ..++|....+|.++.+||||+|..||+|+|+..+. .-....+..|+.|. .+|-....++
T Consensus 135 ~~rL~~v~G~~~v~~~eV~~~~~sLns~d~FIL~~~~~iy~W~G~~s~~------~Er~~A~~~a~~i~~~~~~g~~~v~ 208 (347)
T 1j72_A 135 VQRLYQVKGKKNIRATERALNWDSFNTGDCFILDLGQNIFAWCGGKSNI------LERNKARDLALAIRDSERQGKAQVE 208 (347)
T ss_dssp EEEEEEEECSSSCEEEEECSSGGGCBTTSEEEEEETTEEEEEECTTCCH------HHHHHHHHHHHHHHTTSCCSSCEEE
T ss_pred CcEEEEEECCCceEEEEEeeeHHHcCCCceEEEecCCEEEEEECCCCCH------HHHHHHHHHHHHHHhhccCCCceEE
Confidence 478888764322 22466677899999999999999999999999764 22345566777775 3565667888
Q ss_pred EEecCCC
Q 002987 803 AFKVLFC 809 (860)
Q Consensus 803 ~~~qg~s 809 (860)
+++||..
T Consensus 209 ~v~EG~E 215 (347)
T 1j72_A 209 IVTDGEE 215 (347)
T ss_dssp EEETTCC
T ss_pred EEeCCCC
Confidence 8999876
No 45
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=92.77 E-value=0.18 Score=58.72 Aligned_cols=102 Identities=8% Similarity=0.009 Sum_probs=57.8
Q ss_pred CCcEEEEEECCCChh------HHHHHHHHHHHhhhcCCCCcEEEEEEECCeEEEEecCCCCceeeecccCCCCCCHHHHH
Q 002987 273 SAPIILVIDECLDEP------HLQHLQSSLHAFVESIPPTARIGIILYGRTVSVYDFSEDSIASSDVLAGDKLPTEDSLK 346 (860)
Q Consensus 273 ~p~~vFvID~S~~~~------~l~~l~~sL~~~L~~Lp~~~~VGlITFd~~V~vy~l~~~~~~~~~V~~g~~~p~~~~l~ 346 (860)
+..++|+||+|.+-. .++....++...+..+.++.+||||+|++.+....+. .
T Consensus 368 ~~~v~lvvD~SgSM~~~~~~~~l~~~~~Aa~l~~~~~~~~d~vglv~Fs~~~~~~~~t-----------~---------- 426 (538)
T 1yvr_A 368 GKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFSDEMLPCPIT-----------V---------- 426 (538)
T ss_dssp CCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHHHCSSEEEEEESSSEECCSCC-----------T----------
T ss_pred CceEEEEEECccccCCCCCCCcHHHHHHHHHHHHHHhccCCceEEEEECCCceEcCCC-----------C----------
Confidence 457899999997521 1333222222233333457789999999643211000 0
Q ss_pred HHhhcCCccccchhhhHHHHHHHHhhhccCccccccCCCCCchHHHHHHHHHHhcCCCcccccccccCCCCCcEEEEEeC
Q 002987 347 ALLYGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAG 426 (860)
Q Consensus 347 ~l~~~~~~fL~pl~e~~~~i~~lL~~L~~~~~~~~~~~r~r~~G~AL~~A~~lL~~~~~~~~~~~~k~~~~ggrIivF~s 426 (860)
... +..+++.|... . ...+.+|.||..|...-. ....|+++++
T Consensus 427 ---------------~~~-l~~~l~~l~~~--~----~GgT~i~~aL~~a~~~~~---------------~~~~iIliTD 469 (538)
T 1yvr_A 427 ---------------NML-LHEVVEKMSDI--T----MGSTDCALPMLWAQKTNT---------------AADIFIVFTD 469 (538)
T ss_dssp ---------------TSC-HHHHHHHHTTC--C----CSCCCTTHHHHHHHHTTC---------------CCSEEEEEEC
T ss_pred ---------------ccc-HHHHHHHHhcC--C----CCCCcHHHHHHHHHhccC---------------CCCEEEEEcC
Confidence 000 33445555432 1 134778899998887622 3478999999
Q ss_pred CCCCCC
Q 002987 427 GPNTYG 432 (860)
Q Consensus 427 Gppt~G 432 (860)
|..+.|
T Consensus 470 g~~~~g 475 (538)
T 1yvr_A 470 CETNVE 475 (538)
T ss_dssp CCCCSS
T ss_pred CCCCCC
Confidence 987654
No 46
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*
Probab=91.42 E-value=0.39 Score=57.93 Aligned_cols=79 Identities=15% Similarity=0.241 Sum_probs=58.3
Q ss_pred hcccceeeccCCc--cccCCccccccCCCcEEEEeCCcEEEEEeCCcccCCccchHHHHHHHHHHHHHHHh-ccCCCcEE
Q 002987 725 VAPRCLMYREGGT--FEELPAYDLAMQSDKAVVLDHGTDVFIWLGAELAADEGRSAAALAACRTLAEELSE-FRFPAPRI 801 (860)
Q Consensus 725 iyP~L~~~~~~~~--~~~lP~~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~~~~~~~~~l~~~~~~a~~l~~-~R~p~Pr~ 801 (860)
-.++||.+.-... ..++|....||.++.+||||+|..||+|.|+..+. .-..+.+..|+.|+. +|.-...+
T Consensus 132 ~~~rL~~vkG~~~v~~~eV~~s~~SLns~DvFILd~g~~iy~W~G~~s~~------~Er~kA~~~a~~i~~~er~g~~~i 205 (729)
T 1d0n_A 132 VVQRLLQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIYQWCGSKSNR------FERLKATQVSKGIRDNERSGRAQV 205 (729)
T ss_dssp CCCEEEEEECSSSCEEEEECSSGGGCCSSSEEEEECSSEEEEEECTTCCH------HHHHHHHHHHHHHHHHSGGGCSEE
T ss_pred CCcEEEEEECCCcEEEEEEeccHHHcCCCCeEEEEcCCEEEEEECCCCCH------HHHHHHHHHHHHHhhhhcCCCccE
Confidence 3578887763222 22467777899999999999999999999999763 223455677777763 67666788
Q ss_pred EEEecCCC
Q 002987 802 LAFKVLFC 809 (860)
Q Consensus 802 i~~~qg~s 809 (860)
++++||..
T Consensus 206 ~~v~Eg~e 213 (729)
T 1d0n_A 206 SVFEEGAE 213 (729)
T ss_dssp EEEETTCC
T ss_pred EEecCCCC
Confidence 88888875
No 47
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=89.97 E-value=0.45 Score=52.06 Aligned_cols=72 Identities=19% Similarity=0.262 Sum_probs=49.7
Q ss_pred cccceeeccCC--c--cccCCccccccCCCcEEEEeCCcEEEEEeCCcccCCccchHHHHHHHHHHHHHHHhccCCCcEE
Q 002987 726 APRCLMYREGG--T--FEELPAYDLAMQSDKAVVLDHGTDVFIWLGAELAADEGRSAAALAACRTLAEELSEFRFPAPRI 801 (860)
Q Consensus 726 yP~L~~~~~~~--~--~~~lP~~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~~~~~~~~~l~~~~~~a~~l~~~R~p~Pr~ 801 (860)
-++||.++-.. . ..++|....+|.++.+||||+|..||+|+|+..+..+ ..+.+..|+.| + ..+
T Consensus 124 ~~rL~~v~g~~~~~~~~~eV~~~~ssLns~d~FIL~~~~~iyvW~G~~s~~~e------r~~A~~~a~~l---~---~~i 191 (344)
T 2fh1_A 124 STRLFQVRANSAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGASEAE------KTGAQELLRVL---R---AQP 191 (344)
T ss_dssp SSEEEEEEECTTCCEEEEEECCSGGGCBTTSEEEEECSSCEEEEECTTCCHHH------HHHHHHHHHHT---T---CCC
T ss_pred CceEEEEECCCCCceEEEEecCchhhcCCCceEEEecCCEEEEEECCCCCHHH------HHHHHHHHHHh---C---CCc
Confidence 46898887432 2 2346667789999999999999999999999976422 23334555555 2 235
Q ss_pred EEEecCCC
Q 002987 802 LAFKVLFC 809 (860)
Q Consensus 802 i~~~qg~s 809 (860)
.+++||..
T Consensus 192 ~~v~EG~E 199 (344)
T 2fh1_A 192 VQVAEGSE 199 (344)
T ss_dssp EEEETTCC
T ss_pred EEEeCCCC
Confidence 66777764
No 48
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}
Probab=89.32 E-value=0.67 Score=51.23 Aligned_cols=72 Identities=17% Similarity=0.198 Sum_probs=50.0
Q ss_pred cccceeeccCCc----cccCCccccccCCCcEEEEeCC-cEEEEEeCCcccCCccchHHHHHHHHHHHHHHHhccCCCcE
Q 002987 726 APRCLMYREGGT----FEELPAYDLAMQSDKAVVLDHG-TDVFIWLGAELAADEGRSAAALAACRTLAEELSEFRFPAPR 800 (860)
Q Consensus 726 yP~L~~~~~~~~----~~~lP~~~~sl~~d~iyLLD~g-~~i~Iw~G~~v~~~~~~~~~~l~~~~~~a~~l~~~R~p~Pr 800 (860)
-++||.++-.+. ..+++....+|.++.+||||+| ..||+|+|+..+.+ -....+..|+.|.. +
T Consensus 165 ~~rL~~vrg~~~~~vr~~EV~~~~ssLns~d~FILd~~~~~iyvW~G~~ss~~------Er~~A~~~a~~i~~------~ 232 (371)
T 3fg6_A 165 PTRLFQVRRNLASITRIVEVDVDANSLNSNDVFVLKLPQNSGYIWVGKGASQE------EEKGAEYVASVLKC------K 232 (371)
T ss_dssp CCEEEEEECCSSSCCEEEEECSSGGGCBTTSEEEEECTTSEEEEEECTTCCHH------HHHHHHHHHHHTTC------E
T ss_pred ccEEEEEeccCCCceEEEEecCCHHHccCCCeEEEEcCCCeEEEEECCCCCHH------HHHHHHHHHHHhcC------C
Confidence 578998864321 2246767789999999999999 99999999997632 23344555666532 2
Q ss_pred EEEEecCCC
Q 002987 801 ILAFKVLFC 809 (860)
Q Consensus 801 ~i~~~qg~s 809 (860)
..+++||..
T Consensus 233 ~~~v~EG~E 241 (371)
T 3fg6_A 233 TLRIQEGEE 241 (371)
T ss_dssp EEEEETTCC
T ss_pred eEEEeCCCC
Confidence 356777764
No 49
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=86.64 E-value=3.5 Score=49.19 Aligned_cols=229 Identities=15% Similarity=0.148 Sum_probs=105.8
Q ss_pred EEEEEECCCC-hhHHHHHHH---HHHHhhhcCCCCcEEEEEEECCeEEEEecCCCCceeeecccCCCCCCHHHHHH-H-h
Q 002987 276 IILVIDECLD-EPHLQHLQS---SLHAFVESIPPTARIGIILYGRTVSVYDFSEDSIASSDVLAGDKLPTEDSLKA-L-L 349 (860)
Q Consensus 276 ~vFvID~S~~-~~~l~~l~~---sL~~~L~~Lp~~~~VGlITFd~~V~vy~l~~~~~~~~~V~~g~~~p~~~~l~~-l-~ 349 (860)
++||+|+|.+ ...++.||+ .|.+.|..+-++.|+||..|-+... +......-.++. +.|-...-.. . .
T Consensus 114 ly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~Dk~~---~P~~~~~p~~~~---~~pc~~~~~~c~~~ 187 (690)
T 3fcs_B 114 IYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPV---SPYMYISPPEAL---ENPCYDMKTTCLPM 187 (690)
T ss_dssp EEEEEECSGGGHHHHHHTTTTTHHHHHHHHHHCSCEEEEEEEECCCSS---TTTSCCCSTTTT---TCTTSSSSSCCCCC
T ss_pred EEEEecCCcchHHHHHHHHHHHHHHHHHHHhhCcCceEEeEEeecccc---CCccccChhhhc---cCCCcCCCCCCCCC
Confidence 4899999987 345555554 4455556667899999999954331 000000000000 0000000000 0 0
Q ss_pred hcCCccccchhhhHHHHHHHHhhhccCccccccCCCC-CchHHHHHHHH--HHhcCCCcccccccccCCCCCcEEEEEeC
Q 002987 350 YGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRD-RCLGTAVEVAL--AIIQGPSAEMSRGVVKRPGGNSRIIVCAG 426 (860)
Q Consensus 350 ~~~~~fL~pl~e~~~~i~~lL~~L~~~~~~~~~~~r~-r~~G~AL~~A~--~lL~~~~~~~~~~~~k~~~~ggrIivF~s 426 (860)
+. -+-+.++.+....+.+.++.+... .+ ...+ ..+-+.+++|+ .-+.= ....-|||||++
T Consensus 188 f~-f~~~l~lt~~~~~f~~~v~~~~is-gn---~D~PE~g~dAl~qa~~c~~~igW------------r~~a~rllv~~T 250 (690)
T 3fcs_B 188 FG-YKHVLTLTDQVTRFNEEVKKQSVS-RN---RDAPEGGFDAIMQATVCDEKIGW------------RNDASHLLVFTT 250 (690)
T ss_dssp CS-EEEEEEEESCHHHHHHHHTTCCCC-CC---SSSSBCHHHHHHHHHHCHHHHTC------------CSSSEEEEEEEE
T ss_pred cc-ceeecccCCCHHHHHHHhhceecc-CC---CCCCchHHHHHHHHhhcccccCC------------CCCceEEEEEEC
Confidence 00 011346666666666666665542 11 1123 34444444543 33321 113568999877
Q ss_pred CCCC--CCCCCccCCCCC---------CCchhhhHhHHHH--HHHHHHHHHhCCcEEEEEeecCCCCCcccchhhhcc-c
Q 002987 427 GPNT--YGPGSVPHSFSH---------PNYLHMEKMALKW--MELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKA-S 492 (860)
Q Consensus 427 Gppt--~GpG~l~~~~~~---------~~~~~~ek~a~~f--Y~~La~~~~~~gisVDiF~~~~~~v~la~l~~L~~~-T 492 (860)
-.+- .|.|++...... .+. |......+| ..+|++++.+++|.+ ||+.....++ .-+.|+++ +
T Consensus 251 Da~~H~agDg~l~gi~~pnd~~chl~~~~~-y~~s~~~DypSi~ql~~~l~~~~i~~-ifavt~~~~~--~y~~l~~~i~ 326 (690)
T 3fcs_B 251 DAKTHIALDGRLAGIVQPNDGQCHVGSDNH-YSASTTMDYPSLGLMTEKLSQKNINL-IFAVTENVVN--LYQNYSELIP 326 (690)
T ss_dssp SSCBCCTTGGGGGTCCSCCCCCCCBCTTCB-BGGGGTSCCCCHHHHHHHHHHTTCEE-EEEEEGGGHH--HHHHHHHHST
T ss_pred CCccccCCCccccceecCCCcceeecCCCc-cccccccCCCCHHHHHHHHHHcCCeE-EEEEeCCchh--hHHHHHhhcC
Confidence 4443 377765431110 111 110111111 256777888888854 6665554433 23344433 4
Q ss_pred ccEEEEeCCchh---HHHHHHHHHHhcccccceEEEEEe-cCCeeEE
Q 002987 493 GGVLVLHDDFGE---AFGVNLQRASTRAAGSHGFLEIRC-SDDILVT 535 (860)
Q Consensus 493 GG~v~~y~~f~~---~f~~dL~r~l~r~~g~~a~lrVR~-S~gi~v~ 535 (860)
|+.+-....-+. .+..+-++.+ ...+.|+... +++++|+
T Consensus 327 ~s~v~~l~~dSsni~~li~~~y~~i----~s~v~l~~~~~p~~~~v~ 369 (690)
T 3fcs_B 327 GTTVGVLSMDSSNVLQLIVDAYGKI----RSKVELEVRDLPEELSLS 369 (690)
T ss_dssp TCEEEEECTTCTTHHHHHHHHHHHH----TTCEEEEEESCCTTEEEE
T ss_pred CceeeeeccccHHHHHHHHHHHHhh----hcceeeeccCCCCcceEE
Confidence 555554443322 2222223322 3445555543 5677665
No 50
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=85.41 E-value=54 Score=37.05 Aligned_cols=220 Identities=15% Similarity=0.123 Sum_probs=106.5
Q ss_pred EEEEEECCCC-hhHHHHH---HHHHHHhhhcCCCCcEEEEEEEC-CeEEEEecCCCCceeeecccCCCCCCHHH-HHHHh
Q 002987 276 IILVIDECLD-EPHLQHL---QSSLHAFVESIPPTARIGIILYG-RTVSVYDFSEDSIASSDVLAGDKLPTEDS-LKALL 349 (860)
Q Consensus 276 ~vFvID~S~~-~~~l~~l---~~sL~~~L~~Lp~~~~VGlITFd-~~V~vy~l~~~~~~~~~V~~g~~~p~~~~-l~~l~ 349 (860)
++|++|+|.+ ...++.| ...|.+.|..+-.+.|+||..|- +.|.=|- + ..++. +++--
T Consensus 114 Ly~LmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~riGfgsFvDk~v~P~~---------~-------~~p~~~l~nPc 177 (472)
T 3t3p_B 114 IYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYM---------Y-------ISPPEALENPC 177 (472)
T ss_dssp EEEEEECSGGGHHHHHHTTTHHHHHHHHHTTTCSCEEEEEEEECCCSSTTTS---------C-------CCSHHHHHCTT
T ss_pred EEEEEccCcchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeccccCccc---------c-------CChhhhhcCCC
Confidence 4899999987 3445544 45555566667789999999994 3331110 0 00111 11000
Q ss_pred h---------cCCccccchhhhHHHHHHHHhhhccCccccccCCCC-CchHHHHHHHH--HHhcCCCcccccccccCCCC
Q 002987 350 Y---------GTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRD-RCLGTAVEVAL--AIIQGPSAEMSRGVVKRPGG 417 (860)
Q Consensus 350 ~---------~~~~fL~pl~e~~~~i~~lL~~L~~~~~~~~~~~r~-r~~G~AL~~A~--~lL~~~~~~~~~~~~k~~~~ 417 (860)
. ..-+.+.++.+....+.+.+..+.-. .+ ...+ ..+-+-+++|+ .-+.= ...
T Consensus 178 ~~~~~~c~p~f~fr~~l~LT~d~~~F~~~V~~~~iS-Gn---~D~PEgg~dAl~qaavC~~~igW------------R~~ 241 (472)
T 3t3p_B 178 YDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQSVS-RN---RDAPEGGFDAIMQATVCDEKIGW------------RND 241 (472)
T ss_dssp TTTTSCCCCCCSEEEEEEEESCHHHHHHHHHHCCCC-CC---SSSSBCHHHHHHHHHHCHHHHTC------------CSS
T ss_pred cccccCCCCCcceeEeeccCCCHHHHHHHHhhcccc-CC---CCCCchHHHHHHHHhcchhhcCC------------CCC
Confidence 0 00011456777777777777775543 11 1123 44544455554 23321 113
Q ss_pred CcEEEEEeCCCCC--CCCCCccCC----CCC-----CCchhhhHhHHHH--HHHHHHHHHhCCcEEEEEeecCCCCCccc
Q 002987 418 NSRIIVCAGGPNT--YGPGSVPHS----FSH-----PNYLHMEKMALKW--MELLGRKAHQHNAVIDILCAGNCPVRVPV 484 (860)
Q Consensus 418 ggrIivF~sGppt--~GpG~l~~~----~~~-----~~~~~~ek~a~~f--Y~~La~~~~~~gisVDiF~~~~~~v~la~ 484 (860)
..|+++|++-.+- .|.|++..- +.+ .+. |......+| ...|++++.+++|.+ ||+......+ .
T Consensus 242 a~rllV~~TDa~~H~agDgkL~GIv~pnDg~CHL~~~~~-Y~~s~~~DYPSv~ql~~~l~e~nI~~-IFAVt~~~~~--~ 317 (472)
T 3t3p_B 242 ASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNH-YSASTTMDYPSLGLMTEKLSQKNINL-IFAVTENVVN--L 317 (472)
T ss_dssp SEEEEEEEESSCBCCTTGGGGGTCCCCCCCCCCBCTTCB-BTTTTTSCCCCHHHHHHHHHHTTCEE-EEEECGGGHH--H
T ss_pred ceEEEEEECCCCcCcCCCccccceecCCCCceEECCCCc-ccccccCCCCCHHHHHHHHHhcCccE-EEEEeccchh--H
Confidence 5799998774332 477776521 110 111 100000111 246777788888654 7777655433 2
Q ss_pred chhhhccc-ccEEEEeCCchh---HHHHHHHHHHhcccccceEEEEEe-cCCeeEE
Q 002987 485 LQPLAKAS-GGVLVLHDDFGE---AFGVNLQRASTRAAGSHGFLEIRC-SDDILVT 535 (860)
Q Consensus 485 l~~L~~~T-GG~v~~y~~f~~---~f~~dL~r~l~r~~g~~a~lrVR~-S~gi~v~ 535 (860)
-+.|+++- |+.+-.-..-+. .|..+-++-+ ...+.|+... +++++|+
T Consensus 318 Y~~L~~~ip~s~vg~L~~dSsNiv~LI~~aY~~i----~s~V~l~~~~~p~~l~v~ 369 (472)
T 3t3p_B 318 YQNYSELIPGTTVGVLSMDSSNVLQLIVDAYGKI----RSKVELEVRDLPEELSLS 369 (472)
T ss_dssp HHHHHHTSTTCEEEECCTTSTTHHHHHHHHHHHH----TTCEEEEEESCCTTEEEE
T ss_pred HHHHHHhCCCceeeeccccchhHHHHHHHHHHHh----heEEEEeeCCCCCcEEEE
Confidence 34454443 333333322221 2333333333 2345555543 5566665
No 51
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=81.44 E-value=3 Score=43.10 Aligned_cols=63 Identities=22% Similarity=0.354 Sum_probs=47.7
Q ss_pred CcEEEEEeCCCCCCCCCCccCCCCCCCchhhhHhHHHHHHHHHHHHHhCCcEEEEEeecC-C---CCCcccchhhhcccc
Q 002987 418 NSRIIVCAGGPNTYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGN-C---PVRVPVLQPLAKASG 493 (860)
Q Consensus 418 ggrIivF~sGppt~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~~~-~---~v~la~l~~L~~~TG 493 (860)
.-.||+.++|--|.|..- .+.|+.+.+.||.|..+.++. + .-|..+|+.+++.||
T Consensus 10 ~k~iillTDG~~~~g~~p---------------------~~aa~~a~~~gi~v~tIGig~~~~~~~~~~~~L~~IA~~tG 68 (242)
T 3rag_A 10 IRQILVITDGCSNIGPDP---------------------VEAARRAHRHGIVVNVIGIVGRGDAGEQGYQEAHSIADAGG 68 (242)
T ss_dssp EEEEEEEESSCCCSSSCH---------------------HHHHHHHHHTTCEEEEEEECCSSSCTTCCCHHHHHHHHHTT
T ss_pred ccEEEEEccCCCCCCCCH---------------------HHHHHHHHHCCCEEEEEEecCCccccchhHHHHHHHHHhcC
Confidence 346788888987776310 246777889999999998853 2 346789999999999
Q ss_pred cEEEEeCC
Q 002987 494 GVLVLHDD 501 (860)
Q Consensus 494 G~v~~y~~ 501 (860)
|..+....
T Consensus 69 G~yf~a~~ 76 (242)
T 3rag_A 69 GMCRIVQP 76 (242)
T ss_dssp SCEEEECG
T ss_pred CeEEEeeH
Confidence 99998844
No 52
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=81.05 E-value=2.9 Score=48.41 Aligned_cols=32 Identities=9% Similarity=-0.047 Sum_probs=22.8
Q ss_pred CCchHHHHHHHHHHhcCCCcccccccccCCCCCcEEEEEeCCCCCCC
Q 002987 386 DRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGGPNTYG 432 (860)
Q Consensus 386 ~r~~G~AL~~A~~lL~~~~~~~~~~~~k~~~~ggrIivF~sGppt~G 432 (860)
++.++.||..|..... ...+|+++++|-.+.|
T Consensus 440 gTdi~~~l~~a~~~~~---------------~~~~vIliTD~~~~~g 471 (535)
T 2nvo_A 440 GTDCAQPILWAAQERL---------------DVDTFVVYTDNETWAG 471 (535)
T ss_dssp CCCTTHHHHHHHHTTC---------------CCSEEEEEESSCCCCC
T ss_pred CccHHHHHHHHHHhcC---------------CCCEEEEEeCCCccCC
Confidence 4677888877755432 3578999999977665
No 53
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=76.92 E-value=0.49 Score=52.80 Aligned_cols=49 Identities=24% Similarity=0.411 Sum_probs=0.0
Q ss_pred cccceeeccCC----ccccCCccccccCCCcEEEEeCCcEEEEEeCCcccCCc
Q 002987 726 APRCLMYREGG----TFEELPAYDLAMQSDKAVVLDHGTDVFIWLGAELAADE 774 (860)
Q Consensus 726 yP~L~~~~~~~----~~~~lP~~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~~~ 774 (860)
.++||.+.-.. ...++|....+|.++.+||||+|..||+|.|+..+.++
T Consensus 178 ~~rLf~VrG~~~~~~ra~EV~~s~sSLns~d~FILd~~~~iyvW~G~~ss~~E 230 (398)
T 3fg7_A 178 STRLFQVQGTGANNTKAFEVPARANFLNSNDVFVLKTQSCCYLWCGKGCSGDE 230 (398)
T ss_dssp -----------------------------------------------------
T ss_pred CcEEEEEECCCCCceEEEEecCCHHHccCCceEEEEeCCeEEEEeCCCCCHHH
Confidence 46777665322 11246667789999999999999999999999976543
No 54
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=71.00 E-value=1 Score=37.75 Aligned_cols=21 Identities=33% Similarity=0.832 Sum_probs=18.1
Q ss_pred CCEEEEccCCCcCCCCccccC
Q 002987 215 SGQWQCVICRNLNGSEGEYVA 235 (860)
Q Consensus 215 ~~~W~C~~C~~~N~lp~~Y~~ 235 (860)
.-.|+|++|...|.++.+|..
T Consensus 15 ~~tWVCpICsfsN~v~s~fdp 35 (76)
T 2j9u_B 15 VSTWVCPICMVSNETQGEFTK 35 (76)
T ss_dssp CEEEECTTTCCEEEESSCCCT
T ss_pred ccceECccccccCcCccccCC
Confidence 468999999999999988743
No 55
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=65.76 E-value=1.8 Score=36.11 Aligned_cols=32 Identities=25% Similarity=0.443 Sum_probs=25.2
Q ss_pred CCCcccCCCccccccceEEEcCCCEEEEccCCCcCCCC
Q 002987 193 RDPHRCHNCGAFANIYCKILLGSGQWQCVICRNLNGSE 230 (860)
Q Consensus 193 ~~pvRC~~C~AYiNPf~~~~~~~~~W~C~~C~~~N~lp 230 (860)
|-++||. |+++ .-.+.+.+.-+|+ ||..-.+.
T Consensus 2 Y~vv~C~-C~~~----~~~~~~~kT~~C~-CG~~~~~~ 33 (71)
T 1gh9_A 2 YIIFRCD-CGRA----LYSREGAKTRKCV-CGRTVNVK 33 (71)
T ss_dssp EEEEEET-TSCC----EEEETTCSEEEET-TTEEEECC
T ss_pred eEEEECC-CCCE----EEEcCCCcEEECC-CCCeeeec
Confidence 4578999 9997 5566777888999 99887664
No 56
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=59.62 E-value=9.4 Score=38.64 Aligned_cols=42 Identities=17% Similarity=0.191 Sum_probs=29.9
Q ss_pred EEEEEECCCC-hhHHHHHHHHHH---HhhhcCCCCcEEEEEEECCe
Q 002987 276 IILVIDECLD-EPHLQHLQSSLH---AFVESIPPTARIGIILYGRT 317 (860)
Q Consensus 276 ~vFvID~S~~-~~~l~~l~~sL~---~~L~~Lp~~~~VGlITFd~~ 317 (860)
++||+|+|.+ ...++.+|+.+. +.|+.+..+.|+||.+|-..
T Consensus 6 l~fl~D~S~SM~~di~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk 51 (212)
T 2iue_A 6 LYFLMGLSGSAQGHLSNVQTLGSDLLKALNEISRSGRIGFGSIVNM 51 (212)
T ss_dssp EEEEEECCGGGTTTHHHHHHHHHHHHHHHHHHCSCEEEEEEEESSS
T ss_pred EEEEEeCCCcchhHHHHHHHHHHHHHHHHHhhCcCceEEEEEEEcC
Confidence 5999999986 344555555554 44555667999999999544
No 57
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=58.32 E-value=2.7 Score=37.64 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=27.7
Q ss_pred CCcccCCCccccccceEEEcCCCEEEEccCCCcCCCCcccc
Q 002987 194 DPHRCHNCGAFANIYCKILLGSGQWQCVICRNLNGSEGEYV 234 (860)
Q Consensus 194 ~pvRC~~C~AYiNPf~~~~~~~~~W~C~~C~~~N~lp~~Y~ 234 (860)
.|.+|.+|+--+ .+.-++.-+|+.|+..|-.++.|.
T Consensus 66 ~p~~C~~CG~~F-----~~~~~kPsrCP~CkSe~Ie~P~F~ 101 (105)
T 2gmg_A 66 KPAQCRKCGFVF-----KAEINIPSRCPKCKSEWIEEPRFK 101 (105)
T ss_dssp CCCBBTTTCCBC-----CCCSSCCSSCSSSCCCCBCCCCEE
T ss_pred ECcChhhCcCee-----cccCCCCCCCcCCCCCccCCccee
Confidence 579999999764 233456789999999998877663
No 58
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=56.15 E-value=2.5 Score=33.66 Aligned_cols=29 Identities=24% Similarity=0.698 Sum_probs=20.7
Q ss_pred CCcccCCCccccccceEEEcCCCEEEEccCCCc
Q 002987 194 DPHRCHNCGAFANIYCKILLGSGQWQCVICRNL 226 (860)
Q Consensus 194 ~pvRC~~C~AYiNPf~~~~~~~~~W~C~~C~~~ 226 (860)
..--|.||+.++.- -.+.-.|.|++|.+.
T Consensus 32 k~r~CaRCGg~v~l----r~~k~~WvC~lC~k~ 60 (62)
T 2a20_A 32 QTKFCARCGGRVSL----RSNKVMWVCNLCRKQ 60 (62)
T ss_dssp CCEECTTSEEEEES----STTCEEEEEHHHHHH
T ss_pred CCeeecccCCEeee----cCCeEEEEehhhhhc
Confidence 44567889987654 335568999999753
No 59
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=54.72 E-value=21 Score=27.13 Aligned_cols=29 Identities=17% Similarity=0.353 Sum_probs=23.2
Q ss_pred CcccCCCccccccceEEEcCCCEEEEccCCCc
Q 002987 195 PHRCHNCGAFANIYCKILLGSGQWQCVICRNL 226 (860)
Q Consensus 195 pvRC~~C~AYiNPf~~~~~~~~~W~C~~C~~~ 226 (860)
...|..|++ .-..+|...+.++|..|+..
T Consensus 5 ~~~CP~C~~---~~l~~d~~~gelvC~~CG~v 33 (50)
T 1pft_A 5 QKVCPACES---AELIYDPERGEIVCAKCGYV 33 (50)
T ss_dssp CCSCTTTSC---CCEEEETTTTEEEESSSCCB
T ss_pred cEeCcCCCC---cceEEcCCCCeEECcccCCc
Confidence 467999998 23467888899999999974
No 60
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=53.66 E-value=8.3 Score=33.13 Aligned_cols=31 Identities=35% Similarity=0.717 Sum_probs=23.6
Q ss_pred CCcccCCCccccccceEEEcCCCEEEEccCCCcCC
Q 002987 194 DPHRCHNCGAFANIYCKILLGSGQWQCVICRNLNG 228 (860)
Q Consensus 194 ~pvRC~~C~AYiNPf~~~~~~~~~W~C~~C~~~N~ 228 (860)
.-..|..|++- ..++...+.|.|..|++...
T Consensus 26 ~~y~Cp~CG~~----~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 26 EDHACPNCGED----RVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp SCEECSSSCCE----EEEEEETTEEEETTTCCEEE
T ss_pred ccCcCCCCCCc----ceeccCCCeEECCCCCCEec
Confidence 34679999983 34566789999999998644
No 61
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.44 E-value=12 Score=31.57 Aligned_cols=31 Identities=26% Similarity=0.853 Sum_probs=23.6
Q ss_pred cccCCCccccccceEEEcCCCEEEEccCCCc
Q 002987 196 HRCHNCGAFANIYCKILLGSGQWQCVICRNL 226 (860)
Q Consensus 196 vRC~~C~AYiNPf~~~~~~~~~W~C~~C~~~ 226 (860)
..|..|+-=+.--|.+...+..|+|.+|...
T Consensus 43 ~~C~~Ck~rVC~~Crv~~~~~~W~C~VC~k~ 73 (76)
T 2csz_A 43 NTCRGCNHLVCRDCRIQESNGTWRCKVCSGP 73 (76)
T ss_dssp SEETTTTEECCTTSEEECSTTCEEEHHHHSS
T ss_pred CcCcccChhhcccccccCCCCCEEEeeCchh
Confidence 4577777777777777776689999999754
No 62
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=35.27 E-value=8.2 Score=38.38 Aligned_cols=28 Identities=25% Similarity=0.763 Sum_probs=19.9
Q ss_pred CCcccCCCcc-ccccceEEEcCCCEEEEccCC
Q 002987 194 DPHRCHNCGA-FANIYCKILLGSGQWQCVICR 224 (860)
Q Consensus 194 ~pvRC~~C~A-YiNPf~~~~~~~~~W~C~~C~ 224 (860)
...+|++|++ |+...-+ ..+.++|+||+
T Consensus 133 ~l~~C~~Cgg~fv~~~~~---~~~~f~Cp~C~ 161 (192)
T 2avu_E 133 QLSSCNCCGGNFITHAHQ---PVGSFACSLCQ 161 (192)
T ss_dssp EEEECTTTCCEEEEESSC---CSSCCCCTTC-
T ss_pred eeCcCCCCCCCeeCccCC---CCCCCcCCCCC
Confidence 4688999998 4444332 45799999999
No 63
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=35.12 E-value=11 Score=30.90 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=28.3
Q ss_pred CCCcccCCCccccccceEEEcCCCEEEEccCCCc
Q 002987 193 RDPHRCHNCGAFANIYCKILLGSGQWQCVICRNL 226 (860)
Q Consensus 193 ~~pvRC~~C~AYiNPf~~~~~~~~~W~C~~C~~~ 226 (860)
..+..|.+|++--.|..+-+..|. ..||-|+..
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~ 39 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLF 39 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHH
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHH
Confidence 356889999999999999998766 999999853
No 64
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=30.11 E-value=14 Score=27.63 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=25.5
Q ss_pred CcccCCCccccccceEEEcCCCEEEEccCCCc
Q 002987 195 PHRCHNCGAFANIYCKILLGSGQWQCVICRNL 226 (860)
Q Consensus 195 pvRC~~C~AYiNPf~~~~~~~~~W~C~~C~~~ 226 (860)
|..|.+|++--.|..+-...|. -.||-|+..
T Consensus 1 p~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~ 31 (43)
T 2vut_I 1 PTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLF 31 (43)
T ss_dssp -CCCSSSCCCCCSCCEECTTSC-EECHHHHHH
T ss_pred CCcCCccCCCCCCccccCCCCC-cccHHHHHH
Confidence 4579999999999998887766 889999854
No 65
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=28.69 E-value=12 Score=35.95 Aligned_cols=33 Identities=21% Similarity=0.513 Sum_probs=22.2
Q ss_pred cccCCCccccccceEE-EcCCCEEEEccCCCcCC
Q 002987 196 HRCHNCGAFANIYCKI-LLGSGQWQCVICRNLNG 228 (860)
Q Consensus 196 vRC~~C~AYiNPf~~~-~~~~~~W~C~~C~~~N~ 228 (860)
..|..|+-.+.--|.+ ......|.|.+|...-+
T Consensus 86 ~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~re 119 (153)
T 2zet_C 86 RQCLECSLFVCKSCSHAHPEEQGWLCDPCHLARV 119 (153)
T ss_dssp EECTTTCCEECGGGEECCSSSSSCEEHHHHHHHH
T ss_pred CcCCCCCchhhcccccccCCCCcEeeHHHHHHHH
Confidence 4566666666666653 23468999999987654
No 66
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=27.58 E-value=15 Score=36.75 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=18.2
Q ss_pred CCcccCCCccccccceEEEcCCCEEEEccCCCc
Q 002987 194 DPHRCHNCGAFANIYCKILLGSGQWQCVICRNL 226 (860)
Q Consensus 194 ~pvRC~~C~AYiNPf~~~~~~~~~W~C~~C~~~ 226 (860)
..-+|..|+-.... ..-|+|++|+..
T Consensus 170 ~~~~C~~CG~i~~g-------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 170 KFHLCPICGYIHKG-------EDFEKCPICFRP 195 (202)
T ss_dssp CEEECSSSCCEEES-------SCCSBCTTTCCB
T ss_pred cEEEECCCCCEEcC-------cCCCCCCCCCCC
Confidence 35689999854332 345999999975
No 67
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=27.51 E-value=27 Score=32.00 Aligned_cols=35 Identities=14% Similarity=0.281 Sum_probs=25.4
Q ss_pred cccCCCccccccc----eEEEcCC---CEEEEccCCCcCCCC
Q 002987 196 HRCHNCGAFANIY----CKILLGS---GQWQCVICRNLNGSE 230 (860)
Q Consensus 196 vRC~~C~AYiNPf----~~~~~~~---~~W~C~~C~~~N~lp 230 (860)
--|++|++++=|- +.+..++ -.++|..|++..-+|
T Consensus 66 ~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~kR~p 107 (120)
T 1x0t_A 66 RYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMRYP 107 (120)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEEEEE
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEc
Confidence 3699999998776 3344332 367899999887765
No 68
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=27.20 E-value=10 Score=28.83 Aligned_cols=9 Identities=33% Similarity=1.250 Sum_probs=5.2
Q ss_pred EEEEccCCC
Q 002987 217 QWQCVICRN 225 (860)
Q Consensus 217 ~W~C~~C~~ 225 (860)
.|+|+.|+.
T Consensus 30 dw~CP~Cg~ 38 (46)
T 6rxn_A 30 DWCCPVCGV 38 (46)
T ss_dssp TCBCTTTCC
T ss_pred CCcCcCCCC
Confidence 466666654
No 69
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=25.61 E-value=10 Score=32.84 Aligned_cols=32 Identities=19% Similarity=0.383 Sum_probs=16.9
Q ss_pred CCcccCCCccccccc-----------eEEEcCCCEEEEccCCC
Q 002987 194 DPHRCHNCGAFANIY-----------CKILLGSGQWQCVICRN 225 (860)
Q Consensus 194 ~pvRC~~C~AYiNPf-----------~~~~~~~~~W~C~~C~~ 225 (860)
..-+|..|+-...+- ..|+.--..|+|+.|+.
T Consensus 34 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga 76 (87)
T 1s24_A 34 LKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGA 76 (87)
T ss_dssp CEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCC
T ss_pred ceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCC
Confidence 346677777443331 12222234577777775
No 70
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=25.44 E-value=23 Score=33.08 Aligned_cols=33 Identities=21% Similarity=0.522 Sum_probs=23.0
Q ss_pred cccCCCccccccceEEEc----CCCEEEEccCCCcCC
Q 002987 196 HRCHNCGAFANIYCKILL----GSGQWQCVICRNLNG 228 (860)
Q Consensus 196 vRC~~C~AYiNPf~~~~~----~~~~W~C~~C~~~N~ 228 (860)
..|..|+-.+.--|.... ....|.|.+|...-+
T Consensus 73 ~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~re 109 (134)
T 1zbd_B 73 VVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQRE 109 (134)
T ss_dssp EECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHHHH
T ss_pred CCCCCCCcccccccCCccCCCCCccceechhhHHHHH
Confidence 567777777666666643 235899999997644
No 71
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=24.55 E-value=56 Score=37.19 Aligned_cols=219 Identities=14% Similarity=0.113 Sum_probs=106.1
Q ss_pred EEEEEECCCC-hhHHHHHH---HHHHHhhhcCCCCcEEEEEEE-CCeEEEEecCCCCceeeecccCCCCCCHHHHHHHhh
Q 002987 276 IILVIDECLD-EPHLQHLQ---SSLHAFVESIPPTARIGIILY-GRTVSVYDFSEDSIASSDVLAGDKLPTEDSLKALLY 350 (860)
Q Consensus 276 ~vFvID~S~~-~~~l~~l~---~sL~~~L~~Lp~~~~VGlITF-d~~V~vy~l~~~~~~~~~V~~g~~~p~~~~l~~l~~ 350 (860)
++|++|+|.+ ...++.|| ..|.+.|..+-.+.|+||..| |+.|. .++ ...++.+++--.
T Consensus 135 LyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v~-----------P~~-----~~~p~~l~~PC~ 198 (503)
T 3v4v_B 135 LYYLMDLSYSMKDDLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVL-----------PFV-----STVPSKLRHPCP 198 (503)
T ss_dssp EEEEEECSGGGHHHHHHHHHSSHHHHHHHTTTCSCEEEEEEEECCCSST-----------TTS-----CCCHHHHHCCSS
T ss_pred EEEEEecCcchhhHHHHHHHHHHHHHHHHHhhCcCcEEeeeeecccccC-----------Ccc-----cCCHHHhcCCCc
Confidence 4999999987 34455555 455566667778999999999 43331 010 011222211000
Q ss_pred -------c--CCccccchhhhHHHHHHHHhhhccCccccccCCCC-CchHHHHHHHH--HHhcCCCcccccccccCCCCC
Q 002987 351 -------G--TGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRD-RCLGTAVEVAL--AIIQGPSAEMSRGVVKRPGGN 418 (860)
Q Consensus 351 -------~--~~~fL~pl~e~~~~i~~lL~~L~~~~~~~~~~~r~-r~~G~AL~~A~--~lL~~~~~~~~~~~~k~~~~g 418 (860)
. .-+-+.++.+....+.+.+....-. .+ ...+ ..+.+-+++|+ .-+.= . ..
T Consensus 199 ~~~~~c~p~f~fr~~l~LT~d~~~F~~~V~~~~iS-Gn---lD~PEggfDAlmQaavC~~~IgW------------R-~a 261 (503)
T 3v4v_B 199 TRLERCQSPFSFHHVLSLTGDAQAFEREVGRQSVS-GN---LDSPEGGFDAILQAALCQEQIGW------------R-NV 261 (503)
T ss_dssp CSSSCCCCCCSEEEEEEEESCSHHHHHHHTTCCCC-CC---SSSSBCHHHHHHHHHHCHHHHTC------------C-SS
T ss_pred CCCCCCCCCcceEEEEEecCCHHHHHHHHhhcCcc-CC---CCCCchHHHHHHHHhhcccccCC------------C-cc
Confidence 0 0011356666666666666655432 11 1123 44544455554 23321 1 14
Q ss_pred cEEEEEeCCCC--CCCCCCccCC----CC-----CCCchhhhHhHHHH--HHHHHHHHHhCCcEEEEEeecCCCCCcccc
Q 002987 419 SRIIVCAGGPN--TYGPGSVPHS----FS-----HPNYLHMEKMALKW--MELLGRKAHQHNAVIDILCAGNCPVRVPVL 485 (860)
Q Consensus 419 grIivF~sGpp--t~GpG~l~~~----~~-----~~~~~~~ek~a~~f--Y~~La~~~~~~gisVDiF~~~~~~v~la~l 485 (860)
.|+++|++-.+ ..|.|++..- +. ..+..+. ....+| ...|++++.+++|.+ ||+.....++ .-
T Consensus 262 ~rllV~~TDA~fH~agDgkLaGIv~pNDg~CHL~~~~~Yt~-s~~~DYPSv~ql~~kL~ennI~~-IFAVt~~~~~--~Y 337 (503)
T 3v4v_B 262 SRLLVFTSDDTFHTAGDGKLGGIFMPSDGHCHLDSNGLYSR-STEFDYPSVGQVAQALSAANIQP-IFAVTSAALP--VY 337 (503)
T ss_dssp EEEEEEEESSCBCCTTGGGTTTCCSCCCSSCCBCTTSBBGG-GGGSCCCCHHHHHHHHHHHTEEE-EEEECSSSHH--HH
T ss_pred eEEEEEECCCCcCcCCCccccceecCCCCCeEECCCCcccc-ccccCCCCHHHHHHHHHhcCCeE-EEEEcccchh--HH
Confidence 69999876333 2477766421 11 0111110 000111 246777788888744 6887766543 33
Q ss_pred hhhhccccc-EEEEeCCchh---HHHHHHHHHHhcccccceEEEEEe-cCCeeEE
Q 002987 486 QPLAKASGG-VLVLHDDFGE---AFGVNLQRASTRAAGSHGFLEIRC-SDDILVT 535 (860)
Q Consensus 486 ~~L~~~TGG-~v~~y~~f~~---~f~~dL~r~l~r~~g~~a~lrVR~-S~gi~v~ 535 (860)
+.|+++-.| .+-.-..-+. .+..+-++-+ ...+.|+... .++++|+
T Consensus 338 ~~L~~~ip~s~vg~Ls~dSsNiv~LI~~aY~~i----~S~V~l~~~~~p~~l~v~ 388 (503)
T 3v4v_B 338 QELSKLIPKSAVGELSEDSSNVVQLIMDAYNSL----SSTVTLEHSSLPPGVHIS 388 (503)
T ss_dssp HHHHTTSTTCEEEECCTTSCTHHHHHHHHHHHH----HTCEEEECCCCCTTEEEE
T ss_pred HHHHHhCCCceeeEccccchhHHHHHHHHHHHh----heEEEEecCCCCCceEEE
Confidence 455554433 3333332221 2323333333 2344454433 5677766
No 72
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=23.21 E-value=69 Score=35.96 Aligned_cols=188 Identities=15% Similarity=0.157 Sum_probs=92.6
Q ss_pred EEEEEECCCC-hhHHHH---HHHHHHHhhhcCCCCcEEEEEEE-CCeEEEEe-cCCCCce-eeecccCCCCCCHHHHHHH
Q 002987 276 IILVIDECLD-EPHLQH---LQSSLHAFVESIPPTARIGIILY-GRTVSVYD-FSEDSIA-SSDVLAGDKLPTEDSLKAL 348 (860)
Q Consensus 276 ~vFvID~S~~-~~~l~~---l~~sL~~~L~~Lp~~~~VGlITF-d~~V~vy~-l~~~~~~-~~~V~~g~~~p~~~~l~~l 348 (860)
.+|++|+|.+ ...++. +...|.+.|..+-.+.|+||..| |+.|.=|. ....... -..-. ..-.+.
T Consensus 125 LyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~riGfGsFvDK~v~P~~~t~p~~~~nPC~~~-~~c~~~------- 196 (454)
T 3vi3_B 125 LYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCTSE-QNCTTP------- 196 (454)
T ss_dssp EEEEEECSGGGHHHHHHHTTHHHHHHHHHTTTCSSEEEEEEEECCCSSTTTSCCSTTTTTCCSCSS-SCCCCC-------
T ss_pred EEEEecCCcchhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeccccCCcccCChHHhcCCCcCc-cCCCCC-------
Confidence 3899999987 344544 44555566667778999999999 44332111 0000000 00000 000000
Q ss_pred hhcCCccccchhhhHHHHHHHHhhhccCccccccCCCC-CchHHHHHHHHH--HhcCCCcccccccccCCCCCcEEEEEe
Q 002987 349 LYGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRD-RCLGTAVEVALA--IIQGPSAEMSRGVVKRPGGNSRIIVCA 425 (860)
Q Consensus 349 ~~~~~~fL~pl~e~~~~i~~lL~~L~~~~~~~~~~~r~-r~~G~AL~~A~~--lL~~~~~~~~~~~~k~~~~ggrIivF~ 425 (860)
+ .-+-+.++.+....+...++.+.-.. + ...+ ..+-+-+++|+- -+.= .. .-|+++|+
T Consensus 197 -f-~fr~~l~LT~d~~~F~~~V~~~~isG-n---~D~PEgg~DAl~Qaavc~~~igW------------R~-a~rllV~~ 257 (454)
T 3vi3_B 197 -F-SYKNVLSLTNKGEVFNELVGKQRISG-N---LDSPEGGFDAIMQVAVCGSLIGW------------RN-VTRLLVFS 257 (454)
T ss_dssp -C-SEEEEEEEESCHHHHHHHHTTCCCCC-C---SSSSBCHHHHHHHHHHCHHHHTC------------CS-SEEEEEEE
T ss_pred -c-ceeeeeecCCCHHHHHHHHhhccccC-C---CcCCchhHHHHHHHhccccccCC------------cc-ceEEEEEE
Confidence 0 00114567777777777777755421 1 1123 445444555542 2221 12 46899987
Q ss_pred CCCC--CCCCCCccCCCCC--------CCchhhhHhHHHH--HHHHHHHHHhCCcEEEEEeecCCCCCcccchhhhcccc
Q 002987 426 GGPN--TYGPGSVPHSFSH--------PNYLHMEKMALKW--MELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKASG 493 (860)
Q Consensus 426 sGpp--t~GpG~l~~~~~~--------~~~~~~ek~a~~f--Y~~La~~~~~~gisVDiF~~~~~~v~la~l~~L~~~TG 493 (860)
+-.+ ..|.|+|-.-... .+. |......+| ...|++++.+++|-+ ||+.......+ -..|+++-+
T Consensus 258 TDa~fH~agDgkL~GIv~PNDg~CHL~~~~-Yt~s~~~DYPSv~ql~~~l~e~nI~~-IFAVt~~~~~~--Y~~L~~~ip 333 (454)
T 3vi3_B 258 TDAGFHFAGDGKLGGIVLPNDGQCHLENNM-YTMSHYYDYPSIAHLVQKLSENNIQT-IFAVTEEFQPV--YKELKNLIP 333 (454)
T ss_dssp ESSCBCCTTTTGGGTCCSCCCCCCCEETTE-ECCTTTSCCCCHHHHHHHHHHTTEEE-EEEEEGGGHHH--HHHHHHHST
T ss_pred CCCCcCcCCCccccceecCCCCccEeCCCc-ccccccCCCCCHHHHHHHHHhcCCcE-EEEEcCccchH--HHHHHHhCC
Confidence 6333 3588887531110 111 100000111 356888888888765 77776655443 234554443
Q ss_pred c
Q 002987 494 G 494 (860)
Q Consensus 494 G 494 (860)
|
T Consensus 334 ~ 334 (454)
T 3vi3_B 334 K 334 (454)
T ss_dssp T
T ss_pred C
Confidence 3
No 73
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=21.82 E-value=49 Score=21.39 Aligned_cols=26 Identities=31% Similarity=0.822 Sum_probs=21.2
Q ss_pred ccCCCccccccceEEEcCCCEEEEccC
Q 002987 197 RCHNCGAFANIYCKILLGSGQWQCVIC 223 (860)
Q Consensus 197 RC~~C~AYiNPf~~~~~~~~~W~C~~C 223 (860)
.|-.|--|=|-||.- .-|+.|-|.=|
T Consensus 2 ~cvscv~fgngfcgd-ncgnswacsgc 27 (27)
T 2hgo_A 2 TCVSCVNFGNGFCGD-NCGNSWACSGC 27 (27)
T ss_dssp CCCSCEEETTTEEEC-SSSCEEECSCC
T ss_pred cceEeEeecCccccC-CcCCcccccCC
Confidence 378899999999964 46799999876
No 74
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.32 E-value=23 Score=27.47 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=21.9
Q ss_pred CCCcccCCCccccccceEEEcCCCEEEEccCCCcCC
Q 002987 193 RDPHRCHNCGAFANIYCKILLGSGQWQCVICRNLNG 228 (860)
Q Consensus 193 ~~pvRC~~C~AYiNPf~~~~~~~~~W~C~~C~~~N~ 228 (860)
.....|.+|++- .+.+.|.|-=|++.|-
T Consensus 12 ~~k~iCpkC~a~--------~~~gaw~CrKCG~~~l 39 (51)
T 3j21_g 12 FKKYVCLRCGAT--------NPWGAKKCRKCGYKRL 39 (51)
T ss_dssp SSEEECTTTCCE--------ECTTCSSCSSSSSCCC
T ss_pred hCCccCCCCCCc--------CCCCceecCCCCCccc
Confidence 456779999986 3468999999998854
No 75
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=21.23 E-value=16 Score=28.52 Aligned_cols=9 Identities=33% Similarity=1.343 Sum_probs=4.2
Q ss_pred EEEEccCCC
Q 002987 217 QWQCVICRN 225 (860)
Q Consensus 217 ~W~C~~C~~ 225 (860)
.|+|+.|+.
T Consensus 35 dw~CP~Cg~ 43 (52)
T 1yk4_A 35 DWVCPLCGA 43 (52)
T ss_dssp TCBCTTTCC
T ss_pred CCcCCCCCC
Confidence 444554443
No 76
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=20.96 E-value=39 Score=40.14 Aligned_cols=41 Identities=17% Similarity=0.291 Sum_probs=30.7
Q ss_pred EEEEEECCCC-hhHHHHHH---HHHHHhhhcCCCCcEEEEEEECC
Q 002987 276 IILVIDECLD-EPHLQHLQ---SSLHAFVESIPPTARIGIILYGR 316 (860)
Q Consensus 276 ~vFvID~S~~-~~~l~~l~---~sL~~~L~~Lp~~~~VGlITFd~ 316 (860)
++||+|+|.+ ...++.|| ..|.+.|..+-++.|+||..|-+
T Consensus 107 ly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~~r~GfgsFvD 151 (687)
T 3k6s_B 107 LYYLMDLSYSMLDDLRNVKKLGGDLLRALNEITESGRIGFGSFVD 151 (687)
T ss_dssp EEEEEECSSTTHHHHHTTTTCCTTHHHHHHSSCCSCEEEEEEECC
T ss_pred EEEEEcCCcchHHHHHHHHHHHHHHHHHHHhhCcCcEEeeEEeec
Confidence 4899999987 34555554 45555667778899999999954
Done!